Citrus Sinensis ID: 009575
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | 2.2.26 [Sep-21-2011] | |||||||
| P21241 | 588 | RuBisCO large subunit-bin | N/A | no | 0.983 | 0.889 | 0.867 | 0.0 | |
| P21240 | 600 | Chaperonin 60 subunit bet | yes | no | 0.983 | 0.871 | 0.870 | 0.0 | |
| Q9LJE4 | 596 | Chaperonin 60 subunit bet | no | no | 0.979 | 0.874 | 0.866 | 0.0 | |
| C0Z361 | 597 | Chaperonin 60 subunit bet | no | no | 0.979 | 0.872 | 0.864 | 0.0 | |
| P08927 | 595 | RuBisCO large subunit-bin | N/A | no | 0.964 | 0.862 | 0.847 | 0.0 | |
| Q43831 | 499 | RuBisCO large subunit-bin | N/A | no | 0.796 | 0.849 | 0.893 | 0.0 | |
| Q9C667 | 611 | Chaperonin 60 subunit bet | no | no | 0.885 | 0.770 | 0.666 | 0.0 | |
| Q119S1 | 561 | 60 kDa chaperonin 1 OS=Tr | yes | no | 0.879 | 0.834 | 0.610 | 1e-160 | |
| Q2JKV7 | 539 | 60 kDa chaperonin 2 OS=Sy | yes | no | 0.877 | 0.866 | 0.617 | 1e-159 | |
| Q2JXD4 | 542 | 60 kDa chaperonin 1 OS=Sy | yes | no | 0.877 | 0.861 | 0.615 | 1e-159 |
| >sp|P21241|RUBB_BRANA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/534 (86%), Positives = 493/534 (92%), Gaps = 11/534 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSV--ALRRARTP 58
MASTFTA SSI SM+APN TDKKL NKLSS SSFGRRQ+V LRR+
Sbjct: 1 MASTFTATSSIGSMVAPNAHKTDKKLM---NKLSS------SSFGRRQNVFPKLRRSSPA 51
Query: 59 KIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 VVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+G+MIAEAMS+VGRKGVVTL
Sbjct: 172 TRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGY+SPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENALYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLG+A+KVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
TLLRL+SKVDAIK LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 472 TLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 525
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This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Brassica napus (taxid: 3708) |
| >sp|P21240|CPNB1_ARATH Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60B1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/534 (87%), Positives = 493/534 (92%), Gaps = 11/534 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALR--RARTP 58
MASTFTA SSI SM+APNG +DKKL S SSSSFGRRQSV R R+ +
Sbjct: 1 MASTFTATSSIGSMVAPNGHKSDKKLISKL---------SSSSFGRRQSVCPRPRRSSSA 51
Query: 59 KIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG +++LQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 IVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTL
Sbjct: 172 TRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
TLLRL+SKVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 525
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Binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Involved in protein assisted folding. Required for proper plastid division. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJE4|CPNB2_ARATH Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/532 (86%), Positives = 494/532 (92%), Gaps = 11/532 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTA SS+ S++APN + KLSS SISSSSFGRR +V +RR+R +
Sbjct: 1 MASTFTATSSLGSLLAPN-----------AIKLSSATSISSSSFGRRHNVCVRRSRPAIV 49
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+
Sbjct: 50 CAAKELHFNKDGTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITR
Sbjct: 110 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITR 169
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT+KALV+ELK MSKEVEDSELADVAAVSAGNN+EVG+MIAEAMSKVGRKGVVTLEE
Sbjct: 170 GIEKTAKALVNELKLMSKEVEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEE 229
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VEY+NCKLLLVDKK+TNARDL+ VLED
Sbjct: 230 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKVTNARDLVGVLED 289
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG T
Sbjct: 290 AIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGAT 349
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VIR+EVGL+LDK GKEVLGNASKVVLTK+ TTIVGDG+TQ+AV+KRV QIR LIE AEQD
Sbjct: 350 VIREEVGLSLDKAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQD 409
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 410 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 469
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LRL+SKVDAIK+TL+NDEEKVGA+IVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 470 LRLASKVDAIKDTLENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEKV 521
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Involved in protein assisted folding. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0Z361|CPNB3_ARATH Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana GN=CPN60B3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/532 (86%), Positives = 490/532 (92%), Gaps = 11/532 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTF+A SS+ S +AP SN+LSS SISSSSFGR QS+A R+AR PKI
Sbjct: 1 MASTFSATSSMGSSLAP-----------PSNRLSSFVSISSSSFGRTQSIAQRKARFPKI 49
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
YAAK LHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+
Sbjct: 50 YAAKQLHFNKDGTAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAA+KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR
Sbjct: 110 EVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 169
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNNYEVGNMIAEAM+KVGRKGVVTLEE
Sbjct: 170 GIEKTTKALVAELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMAKVGRKGVVTLEE 229
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSAEN LYVVEGMQFDRGYISPYFVTDSEKM EYENCKL LVDKKITNARD+I++LED
Sbjct: 230 GKSAENSLYVVEGMQFDRGYISPYFVTDSEKMCAEYENCKLFLVDKKITNARDIISILED 289
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AI+G YP+LIIAEDIEQE LATLVVNKLRG +K+AALKAPGFGERKSQYLDDIA LTG T
Sbjct: 290 AIKGGYPLLIIAEDIEQEPLATLVVNKLRGTIKVAALKAPGFGERKSQYLDDIAALTGAT 349
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VIR+EVGL L+KVG EVLGNA KVVLTKDTTTIVGDGST++ V KRV QI+ LIE AEQD
Sbjct: 350 VIREEVGLQLEKVGPEVLGNAGKVVLTKDTTTIVGDGSTEEVVKKRVEQIKNLIEAAEQD 409
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 410 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 469
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LRL+SKVDAIKETL NDEEKVGADIVK+AL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 470 LRLASKVDAIKETLANDEEKVGADIVKKALSYPLKLIAKNAGVNGSVVSEKV 521
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Involved in protein assisted folding. Arabidopsis thaliana (taxid: 3702) |
| >sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2 | Back alignment and function description |
|---|
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/538 (84%), Positives = 486/538 (90%), Gaps = 25/538 (4%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSF--GRRQS---VALRRA 55
MASTF+A +SS LSS A+ISS G+R + V R+
Sbjct: 1 MASTFSA-------------------TTSSCNLSSSAAISSFPLAAGKRNANKVVLPRKN 41
Query: 56 RTPKIYA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVND 114
R K+ A AK+LHFNKDG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVND
Sbjct: 42 RNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVND 101
Query: 115 GVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGAN 174
GVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGAN
Sbjct: 102 GVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGAN 161
Query: 175 PVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKG 234
PVLITRGIEKTSKALV+ELK+MSKEVEDSELADVAAVSAGNN+EVGNMIAEA+SKVGRKG
Sbjct: 162 PVLITRGIEKTSKALVAELKKMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKG 221
Query: 235 VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDL 294
VVTLEEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKM VE+ENCKLLLVDKKITNARDL
Sbjct: 222 VVTLEEGKSAENSLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKITNARDL 281
Query: 295 INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 354
IN+LEDAIR +PI+IIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIA
Sbjct: 282 INILEDAIRSGFPIVIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIA 341
Query: 355 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLI 414
ILTGGTVIR+EVGL LDK KEVLGNA+KVVLTKDTTTIVGDGSTQ+AV+KRV+QI+ I
Sbjct: 342 ILTGGTVIREEVGLTLDKADKEVLGNAAKVVLTKDTTTIVGDGSTQEAVNKRVSQIKNQI 401
Query: 415 ENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVV 474
E AEQ+YE+EKL+ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVV
Sbjct: 402 EAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVV 461
Query: 475 GGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
GGGCTLLRL+SKVDAIK+TL NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 462 GGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 519
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This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Pisum sativum (taxid: 3888) |
| >sp|Q43831|RUBB_SECCE RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/424 (89%), Positives = 408/424 (96%)
Query: 109 PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV 168
P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV
Sbjct: 1 PQIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV 60
Query: 169 VAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMS 228
+AAGANPV ITRGIEKT+KALV ELK+MSKEVEDSELADVAAVSAGNNYE+GNMIAEAMS
Sbjct: 61 IAAGANPVQITRGIEKTAKALVLELKKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMS 120
Query: 229 KVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI 288
KVGRKGVVTLEEG+S+EN LYVVEGMQF+RGYISPYFVTDSEKM EYENCKLLLVDKKI
Sbjct: 121 KVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMTTEYENCKLLLVDKKI 180
Query: 289 TNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348
TNARDLINVLE+AIRG YPILIIAEDIEQEALATLVVNKLRG+LKI A+KAPGFGERK+Q
Sbjct: 181 TNARDLINVLEEAIRGQYPILIIAEDIEQEALATLVVNKLRGSLKICAIKAPGFGERKTQ 240
Query: 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVA 408
YLDDIAILTGGTVIRDEVGL LDK VLG A+KVVLTK++TTIVGDGSTQ+ V+KRVA
Sbjct: 241 YLDDIAILTGGTVIRDEVGLTLDKADNTVLGTAAKVVLTKESTTIVGDGSTQEEVTKRVA 300
Query: 409 QIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAV 468
QI+ LIE AEQDYE+EKLNERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAAV
Sbjct: 301 QIKNLIEAAEQDYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAV 360
Query: 469 EEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528
EEGIVVGGGCTLLRL++KVDAIK+TL+NDE+KVGA+IV+RALCYPLKLIAKNAGVNGSVV
Sbjct: 361 EEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVV 420
Query: 529 SEKV 532
+EKV
Sbjct: 421 TEKV 424
|
This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Secale cereale (taxid: 4550) |
| >sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/471 (66%), Positives = 400/471 (84%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++HFN+DG KKLQ G + +A L+GVTLGPKGRNVVL++KYG P+IVNDG TV KE
Sbjct: 39 AAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKE 98
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELEDP+EN+G KLVRQA AKTNDLAGDG+TTS++LA GLI EG+KV++AG NP+ + RG
Sbjct: 99 IELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARG 158
Query: 182 IEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
IEKT+KALV ELK MS+E+ED ELA VAAVSAGN+YEVGNMI+ A +VGR GVVT+E+G
Sbjct: 159 IEKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKG 218
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
K N L +VEGMQF+RGY+SPYFVTD K E+ +CKLLLVDKKITN +D+ +L+ A
Sbjct: 219 KYLVNNLEIVEGMQFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILDSA 278
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
++ +P+LI+AEDIEQ+ALA ++ NKL+G LK+AA+KAP FGERKS LDD+AI TG TV
Sbjct: 279 VKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGATV 338
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
IRDE+GL+L+K GKEVLG A +V++TKD+T IV +G TQ AV +RV+QI+ LIEN E+++
Sbjct: 339 IRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEENF 398
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+++ LNER+A+LSGG+A+IQVGA T+ ELK+K+L+VEDALNATK+A+EEGIVVGGGC LL
Sbjct: 399 QKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCALL 458
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
RL++KVD IKETLDN E+K+GA+I K+AL YP++LIAKNA NG++V EKV
Sbjct: 459 RLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEKV 509
|
Involved specifically in the folding of NDHH, a subunit of the chloroplast NADH dehydrogenase-like complex (NDH). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q119S1|CH601_TRIEI 60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1456), Expect = e-160, Method: Compositional matrix adjust.
Identities = 287/470 (61%), Positives = 368/470 (78%), Gaps = 2/470 (0%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + F D + + L+ G+N LAD V +T+GPKGRNV+LE KYGAP+IVNDG+TVAK++
Sbjct: 2 AKIVEF--DDKSRRSLERGINTLADAVRITMGPKGRNVLLEKKYGAPQIVNDGITVAKDI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELEDP+EN GAKL+++ A+KT D+AGDGTTT+ VLAQ +I EG+K VAAGANPV + RGI
Sbjct: 60 ELEDPLENTGAKLIQEVASKTKDIAGDGTTTATVLAQSMIKEGLKNVAAGANPVAVRRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGK 242
EKT LV E++ ++K VE +A VA VSAG + EVG MI+EAM KV + GV+T+EE K
Sbjct: 120 EKTVSLLVKEIQTVAKPVEGEAIAQVATVSAGGDAEVGRMISEAMDKVTKDGVITVEESK 179
Query: 243 SAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302
S L VVEGMQ DRGY+SPYFVTD E++ V++EN ++L+ DKKI++ +DL+ VLE
Sbjct: 180 SLSTDLEVVEGMQIDRGYLSPYFVTDQERLVVDFENARILITDKKISSIQDLVPVLEKVA 239
Query: 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVI 362
R +LIIAEDIE EALATLVVNK RG L +AA+KAPGFG+R+ L DIAILTGG +I
Sbjct: 240 RAGQSLLIIAEDIEGEALATLVVNKARGVLNVAAVKAPGFGDRRKAMLQDIAILTGGQLI 299
Query: 363 RDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422
+EVGL+L+ V +++G K+ + KD TTIV DG T + V KR+AQIR + ++ DY+
Sbjct: 300 SEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYD 359
Query: 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR 482
+EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAAVEEGIV GGG TL+
Sbjct: 360 KEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIH 419
Query: 483 LSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LS+KV+ +K +L+N+EEK+GADIV+RAL PL IA N+GV GSV+ EKV
Sbjct: 420 LSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKV 469
|
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Trichodesmium erythraeum (strain IMS101) (taxid: 203124) |
| >sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 563 bits (1452), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/471 (61%), Positives = 368/471 (78%), Gaps = 4/471 (0%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + F ++ A K L+ G+N+LAD + VT+GPKGRNVVLE K+GAP+IVNDGVT+AKE+
Sbjct: 2 AKRILFREE--ARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
EL DP+EN GA+L+R+ A+KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGI
Sbjct: 60 ELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EKT+ LV ++ +K VE + +A+VA +SAGN+ EVG MIA+AM VGR GV+T+EE
Sbjct: 120 EKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEES 179
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS E L VVEGMQFDRGYISPYFVTDSE+M EYEN LL+ KI++ +DL+ +LE
Sbjct: 180 KSLETELDVVEGMQFDRGYISPYFVTDSERMVAEYENAYLLITSNKISSLQDLVPILERV 239
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
R P+L+IAED+E EALATLVVN+LRG L A+KAP FG+R+ L+DIAILTGG +
Sbjct: 240 AREGRPLLVIAEDVEGEALATLVVNRLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQL 299
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I ++VG+ LDKV +++G A K+ +TKD TTIV DGST+ AV KRVAQIR +E + +Y
Sbjct: 300 ISEDVGIKLDKVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEY 359
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AAVEEGIV GGG TLL
Sbjct: 360 DREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLL 419
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LS + A K L N EE+VGA+IV RAL PL IA NAG+ GSVV EKV
Sbjct: 420 HLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKV 469
|
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332) |
| >sp|Q2JXD4|CH601_SYNJA 60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust.
Identities = 290/471 (61%), Positives = 365/471 (77%), Gaps = 4/471 (0%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + F ++ A K L+ G+N+LAD V VT+GPKGRNV+LE K+GAP+IVNDGVT+AKE+
Sbjct: 2 AKQILFREE--ARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
EL DP+EN GA+L+R+ A KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGI
Sbjct: 60 ELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EKT+ LV ++ +K VE + +A+VA +SAGN+ EVG MIA AM VGR GV+T+EE
Sbjct: 120 EKTTAYLVEQIAAQAKPVEGRKNIAEVATISAGNDPEVGEMIARAMDAVGRDGVITVEES 179
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS E L VVEGMQFDRGYISPYFVTD+E+M EYEN LL+ K++N +DL+ VLE
Sbjct: 180 KSLETQLEVVEGMQFDRGYISPYFVTDTERMVAEYENAYLLITSNKLSNLQDLVPVLERV 239
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
R P+L+IAED+E EALATLVVNKLRG L A+KAP FG+R+ L+DIAILTGG +
Sbjct: 240 AREGRPLLVIAEDVEGEALATLVVNKLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQL 299
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I +++G+ L+ V +++G A K+ +TKD TTIV DGST+ AV KRVAQIR +E + +Y
Sbjct: 300 ISEDIGIKLENVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEY 359
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AAVEEGIV GGG TLL
Sbjct: 360 DREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLL 419
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LS + A K L N EE+VGADIV RAL PL IA NAG+ GSVV EKV
Sbjct: 420 HLSKGIPAFKANL-NAEEQVGADIVCRALQAPLYQIAHNAGLEGSVVVEKV 469
|
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| 255564820 | 605 | rubisco subunit binding-protein beta sub | 0.994 | 0.874 | 0.917 | 0.0 | |
| 224073124 | 607 | predicted protein [Populus trichocarpa] | 1.0 | 0.876 | 0.904 | 0.0 | |
| 449452644 | 608 | PREDICTED: ruBisCO large subunit-binding | 1.0 | 0.875 | 0.898 | 0.0 | |
| 449493562 | 608 | PREDICTED: LOW QUALITY PROTEIN: ruBisCO | 1.0 | 0.875 | 0.898 | 0.0 | |
| 224052861 | 607 | predicted protein [Populus trichocarpa] | 1.0 | 0.876 | 0.890 | 0.0 | |
| 225435794 | 608 | PREDICTED: ruBisCO large subunit-binding | 1.0 | 0.875 | 0.908 | 0.0 | |
| 297853250 | 600 | CPN60B [Arabidopsis lyrata subsp. lyrata | 0.983 | 0.871 | 0.876 | 0.0 | |
| 134104 | 588 | RecName: Full=RuBisCO large subunit-bind | 0.983 | 0.889 | 0.867 | 0.0 | |
| 1762130 | 599 | chaperonin-60 beta subunit [Solanum tube | 0.983 | 0.873 | 0.870 | 0.0 | |
| 225442531 | 609 | PREDICTED: ruBisCO large subunit-binding | 1.0 | 0.873 | 0.857 | 0.0 |
| >gi|255564820|ref|XP_002523404.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] gi|223537354|gb|EEF38983.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/533 (91%), Positives = 514/533 (96%), Gaps = 4/533 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSS+ S++APN DKK AS+SN+LSS ASIS S+FGRRQ+V LRR+R+PKI
Sbjct: 1 MASTFTAMSSVGSLVAPN---VDKKFASTSNRLSSFASISGSAFGRRQNVVLRRSRSPKI 57
Query: 61 YA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
A AKDLHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVA
Sbjct: 58 CAMAKDLHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA 117
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 118 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 177
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKTSKALV+ELK MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMS+VGRKGVVTLE
Sbjct: 178 RGIEKTSKALVTELKSMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSRVGRKGVVTLE 237
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EGKSAEN LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIN+LE
Sbjct: 238 EGKSAENSLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILE 297
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIRG YPIL+IAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG
Sbjct: 298 DAIRGGYPILVIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 357
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TV+R+EVGL+LDKVGKE+LGNASKVVLTKDTTTIVGDGSTQ+AV+KRVAQIR LIE AEQ
Sbjct: 358 TVVREEVGLSLDKVGKEILGNASKVVLTKDTTTIVGDGSTQEAVTKRVAQIRNLIEAAEQ 417
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
DYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 418 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 477
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LLRL+SKVDAIK++LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 478 LLRLASKVDAIKDSLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073124|ref|XP_002303983.1| predicted protein [Populus trichocarpa] gi|222841415|gb|EEE78962.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/532 (90%), Positives = 509/532 (95%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSS+ ++ APNGR+ DKK SSNKLSS ASIS+S FGR Q+V L R+R K+
Sbjct: 1 MASTFTAMSSVGTLAAPNGRVMDKKFVFSSNKLSSFASISASRFGRPQNVVLPRSRPLKV 60
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAK
Sbjct: 61 NAAKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 120
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR
Sbjct: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT++ALV+ELK MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE
Sbjct: 181 GIEKTTRALVNELKLMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSA+N LYVVEGMQFDRGYISPYFVTDSEKM+VEYENCKLLLVDKKITNARDLI++LED
Sbjct: 241 GKSADNSLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKITNARDLISILED 300
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AIR YP+LIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT
Sbjct: 301 AIRAGYPVLIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
V+R+EVGLALDKVGKEVLG+ASKVVLTKDTTTIVGDGSTQ+AV+KRVAQIR LIE AEQD
Sbjct: 361 VVREEVGLALDKVGKEVLGHASKVVLTKDTTTIVGDGSTQEAVNKRVAQIRNLIEAAEQD 420
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LRL+SKVDAIK++L+NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 481 LRLASKVDAIKDSLENDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 532
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452644|ref|XP_004144069.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/533 (89%), Positives = 509/533 (95%), Gaps = 1/533 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSSI ++ AP R+ DKKL SSS+KL+S SISS + +RQSV LRR R+ KI
Sbjct: 1 MASTFTAMSSIGTLAAPGSRVMDKKLLSSSDKLTSRTSISSFALPKRQSVVLRRNRSSKI 60
Query: 61 YA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
A AK+LHFN+DG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVA
Sbjct: 61 SAMAKELHFNQDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA 120
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 121 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 180
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKT+KALVSELK+MSKEVEDSELADVAAVSAGNN+EVGNMIAEAMSKVGRKGVVTLE
Sbjct: 181 RGIEKTAKALVSELKKMSKEVEDSELADVAAVSAGNNHEVGNMIAEAMSKVGRKGVVTLE 240
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EG+SA+N LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIN+LE
Sbjct: 241 EGRSADNFLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILE 300
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIRG YP++I+AEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGG
Sbjct: 301 DAIRGGYPVVIMAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGG 360
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TVIR+EVGL+LDK GKEVLGNASK+VLTKDTTTIVGDGSTQ+AVSKRVAQI+ LIE AEQ
Sbjct: 361 TVIREEVGLSLDKAGKEVLGNASKIVLTKDTTTIVGDGSTQEAVSKRVAQIKNLIEVAEQ 420
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
DYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 421 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 480
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LLRL+SKVDAIKET +NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 481 LLRLASKVDAIKETFENDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 533
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449493562|ref|XP_004159350.1| PREDICTED: LOW QUALITY PROTEIN: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/533 (89%), Positives = 507/533 (95%), Gaps = 1/533 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSSI ++ AP R DKKL SSS+KL+S SISS + +RQSV LRR R+ KI
Sbjct: 1 MASTFTAMSSIGTLAAPGSRAMDKKLLSSSDKLTSRTSISSFALPKRQSVVLRRNRSSKI 60
Query: 61 YA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
A AK+LHFN+DG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVA
Sbjct: 61 SAMAKELHFNQDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA 120
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 121 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 180
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKT+KALVSELK MSKEVEDSELADVAAVSAGNN+EVGNMIAEAMSKVGRKGVVTLE
Sbjct: 181 RGIEKTAKALVSELKXMSKEVEDSELADVAAVSAGNNHEVGNMIAEAMSKVGRKGVVTLE 240
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EG+SA+N LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIN+LE
Sbjct: 241 EGRSADNFLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILE 300
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIRG YP++I+AEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGG
Sbjct: 301 DAIRGGYPVVIMAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGG 360
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TVIR+EVGL+LDK GKEVLGNASK+VLTKDTTTIVGDGSTQ+AVSKRVAQI+ LIE AEQ
Sbjct: 361 TVIREEVGLSLDKAGKEVLGNASKIVLTKDTTTIVGDGSTQEAVSKRVAQIKNLIEVAEQ 420
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
DYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 421 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 480
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LLRL+SKVDAIKET +NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 481 LLRLASKVDAIKETFENDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 533
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224052861|ref|XP_002297617.1| predicted protein [Populus trichocarpa] gi|118486341|gb|ABK95011.1| unknown [Populus trichocarpa] gi|222844875|gb|EEE82422.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/532 (89%), Positives = 506/532 (95%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSS ++ APN R DKK A SSNKLSS ASIS+S FGR Q+V L R+R+ K+
Sbjct: 1 MASTFTAMSSAGTLAAPNARALDKKFAFSSNKLSSFASISASRFGRPQNVVLPRSRSLKV 60
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG A++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAK
Sbjct: 61 NAAKELHFNKDGSAIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 120
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR
Sbjct: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT++ALV+ELK MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE
Sbjct: 181 GIEKTTRALVNELKLMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSA+N LYVVEGMQFDRGYISPYFVTDSEKMAVEY+NCKLLLVDKKITNARDLI +LED
Sbjct: 241 GKSADNSLYVVEGMQFDRGYISPYFVTDSEKMAVEYDNCKLLLVDKKITNARDLIAILED 300
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AI+G YP++I+AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT
Sbjct: 301 AIKGGYPVVIVAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
V+R+EVGLALDKVG EVLG+ASKVVLTKDTTTIV DGSTQ+AV+KRVAQI+ LIE AEQD
Sbjct: 361 VVREEVGLALDKVGSEVLGHASKVVLTKDTTTIVADGSTQEAVNKRVAQIKNLIEAAEQD 420
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 421 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LRL+SKVDAIK++L+NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 481 LRLASKVDAIKDSLENDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 532
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435794|ref|XP_002285746.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [Vitis vinifera] gi|297746501|emb|CBI16557.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/533 (90%), Positives = 510/533 (95%), Gaps = 1/533 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MAS FT MSS+ S+ AP GR DKKLA+SS++LSS ASISSSSFGRRQ+V LRR R+P+I
Sbjct: 1 MASAFTTMSSVGSLAAPGGRGMDKKLATSSDRLSSFASISSSSFGRRQNVVLRRTRSPRI 60
Query: 61 YA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
A AKDL+FNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVA
Sbjct: 61 NAMAKDLYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA 120
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 121 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 180
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKT+K+LV+ELK +SKEVEDSELADVAAVSAGNN+EVGNMIAEAMSKVGRKGVVTLE
Sbjct: 181 RGIEKTTKSLVAELKLISKEVEDSELADVAAVSAGNNHEVGNMIAEAMSKVGRKGVVTLE 240
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EGKSAEN LYVVEGMQFDRGYISPYFVTDSEKMAVE+ENCKLLLVDKKITNARDLINVLE
Sbjct: 241 EGKSAENHLYVVEGMQFDRGYISPYFVTDSEKMAVEFENCKLLLVDKKITNARDLINVLE 300
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIRG YPILIIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGG
Sbjct: 301 DAIRGGYPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGG 360
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TVIRDEVGL LDK KEVLG+A+KVVLTKDTTTIVGDGSTQ+AV+KRVAQIR LIE AEQ
Sbjct: 361 TVIRDEVGLTLDKAEKEVLGHAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIRNLIEAAEQ 420
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
+YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 421 EYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 480
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LLRL+SKVDAIK+TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 481 LLRLASKVDAIKDTLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297853250|ref|XP_002894506.1| CPN60B [Arabidopsis lyrata subsp. lyrata] gi|297340348|gb|EFH70765.1| CPN60B [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/534 (87%), Positives = 495/534 (92%), Gaps = 11/534 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALR--RARTP 58
MASTFTA SSI SM+APNG +DKKL NKLSS SSFGRRQSV R R+ +
Sbjct: 1 MASTFTATSSIGSMVAPNGHKSDKKLM---NKLSS------SSFGRRQSVCPRPRRSGSA 51
Query: 59 KIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 IVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTL
Sbjct: 172 TRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
TLLRL+SKVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 525
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|134104|sp|P21241.1|RUBB_BRANA RecName: Full=RuBisCO large subunit-binding protein subunit beta, chloroplastic; AltName: Full=60 kDa chaperonin subunit beta; AltName: Full=CPN-60 beta; Flags: Precursor gi|167117|gb|AAA32980.1| 60-kDa beta-polypeptide of plastid chaperonin-60 precursor [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/534 (86%), Positives = 493/534 (92%), Gaps = 11/534 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSV--ALRRARTP 58
MASTFTA SSI SM+APN TDKKL NKLSS SSFGRRQ+V LRR+
Sbjct: 1 MASTFTATSSIGSMVAPNAHKTDKKLM---NKLSS------SSFGRRQNVFPKLRRSSPA 51
Query: 59 KIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 VVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+G+MIAEAMS+VGRKGVVTL
Sbjct: 172 TRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGY+SPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENALYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLG+A+KVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
TLLRL+SKVDAIK LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 472 TLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 525
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1762130|gb|AAB39827.1| chaperonin-60 beta subunit [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/533 (87%), Positives = 496/533 (93%), Gaps = 10/533 (1%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTF MSS + AP ++SSNKLSS+A+ISS+SFG +++VALR++R P I
Sbjct: 1 MASTFAGMSSAGPLAAP---------STSSNKLSSVANISSTSFGSKRNVALRKSRRPTI 51
Query: 61 YAA-KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
AA K+LHFNKDG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA
Sbjct: 52 LAAAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 111
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 112 REVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 171
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKT+KALV+ELK MSKEVEDSELADVAAVSAGNN EVG+MIAEAMSKVGRKGVVTLE
Sbjct: 172 RGIEKTAKALVAELKNMSKEVEDSELADVAAVSAGNNLEVGSMIAEAMSKVGRKGVVTLE 231
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EGKSAEN L VVEGMQFDRGY+SPYFVTDSEKM+VEYENCKLLLVDKKITNARDL+NVLE
Sbjct: 232 EGKSAENSLRVVEGMQFDRGYVSPYFVTDSEKMSVEYENCKLLLVDKKITNARDLVNVLE 291
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIR YPILIIAEDIEQEALATLVVNKLRGALK+AALKAPGFGERKSQYLDDIA LTGG
Sbjct: 292 DAIRNGYPILIIAEDIEQEALATLVVNKLRGALKVAALKAPGFGERKSQYLDDIATLTGG 351
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TVIR+E+GL LDK KEVLG+A+KVVLTKD TTIVGDGSTQ+AV+KRVAQI+ LIE A+Q
Sbjct: 352 TVIREELGLTLDKADKEVLGHAAKVVLTKDATTIVGDGSTQEAVNKRVAQIKNLIEAADQ 411
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
DYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 412 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 471
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LLRL++KVDAIK TL NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 472 LLRLAAKVDAIKGTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 524
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442531|ref|XP_002284134.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [Vitis vinifera] gi|297743227|emb|CBI36094.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/534 (85%), Positives = 496/534 (92%), Gaps = 2/534 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSF-GRRQSVALRRARTPK 59
MAS+F MSSI + + DKK SS +LSS ASIS++SF GR+QS+ L++ +PK
Sbjct: 1 MASSFATMSSIGYFTSSSSHTMDKKFLGSSRRLSSFASISANSFEGRKQSMVLQKRCSPK 60
Query: 60 IYA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ A AK+L+FNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTV
Sbjct: 61 VRAMAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV 120
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGA+LVRQAA+KTNDLAGDGTTTSVVLAQGLI EGVKVVAAGANPV I
Sbjct: 121 AREVELEDPVENIGARLVRQAASKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVQI 180
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIE T+KALV+ELK MSKEVEDSELADVAAVSAGNNYEVG MIAEAM +VGRKGVVTL
Sbjct: 181 TRGIENTTKALVAELKLMSKEVEDSELADVAAVSAGNNYEVGYMIAEAMGQVGRKGVVTL 240
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL
Sbjct: 241 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 300
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAI+G YPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG
Sbjct: 301 EDAIKGGYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 360
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
GTVIR+EVGL+LDK KEVLG+A+KVVLTKDTTTIVGDGSTQ+AV+KRVAQIR L+E A+
Sbjct: 361 GTVIREEVGLSLDKAEKEVLGHAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIRNLVEAAD 420
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 421 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 480
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
TLLRL++KVDAIK+TLD+DE+KVGADIVKRAL YP+KLIAKNAGVNGSVV EKV
Sbjct: 481 TLLRLAAKVDAIKDTLDSDEQKVGADIVKRALSYPMKLIAKNAGVNGSVVIEKV 534
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| TAIR|locus:2193839 | 600 | CPN60B "chaperonin 60 beta" [A | 0.983 | 0.871 | 0.837 | 6.7e-223 | |
| TAIR|locus:2092825 | 596 | Cpn60beta2 "chaperonin-60beta2 | 0.979 | 0.874 | 0.828 | 7.7e-222 | |
| TAIR|locus:2028751 | 611 | Cpn60beta4 "chaperonin-60beta4 | 0.885 | 0.770 | 0.647 | 6.2e-165 | |
| UNIPROTKB|Q05972 | 541 | groL1 "60 kDa chaperonin 1" [S | 0.877 | 0.863 | 0.552 | 1.3e-130 | |
| TIGR_CMR|CBU_1718 | 552 | CBU_1718 "chaperonin, 60 kDa" | 0.875 | 0.844 | 0.532 | 1.4e-128 | |
| TIGR_CMR|GSU_3340 | 544 | GSU_3340 "60 kDa chaperonin" [ | 0.874 | 0.854 | 0.545 | 5.9e-128 | |
| TIGR_CMR|CHY_0807 | 540 | CHY_0807 "chaperonin GroL" [Ca | 0.877 | 0.864 | 0.542 | 2e-127 | |
| UNIPROTKB|Q9KNR7 | 544 | groL1 "60 kDa chaperonin 1" [V | 0.877 | 0.858 | 0.542 | 2.9e-126 | |
| TIGR_CMR|SPO_0887 | 546 | SPO_0887 "chaperonin, 60 kDa" | 0.875 | 0.853 | 0.547 | 2.9e-126 | |
| TIGR_CMR|VC_2664 | 544 | VC_2664 "chaperonin, 60 Kd sub | 0.877 | 0.858 | 0.542 | 2.9e-126 |
| TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2152 (762.6 bits), Expect = 6.7e-223, P = 6.7e-223
Identities = 447/534 (83%), Positives = 474/534 (88%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPK- 59
MASTFTA SSI SM+APNG +D FGRRQSV R R+
Sbjct: 1 MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSS---------FGRRQSVCPRPRRSSSA 51
Query: 60 -IYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG +++LQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 IVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTL
Sbjct: 172 TRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA C
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
TLLRL+SKVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 525
|
|
| TAIR|locus:2092825 Cpn60beta2 "chaperonin-60beta2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2142 (759.1 bits), Expect = 7.7e-222, P = 7.7e-222
Identities = 441/532 (82%), Positives = 473/532 (88%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPKI 60
MASTFTA SS+ S++APN FGRR +V +RR+R +
Sbjct: 1 MASTFTATSSLGSLLAPNA-----------IKLSSATSISSSSFGRRHNVCVRRSRPAIV 49
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+
Sbjct: 50 CAAKELHFNKDGTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITR
Sbjct: 110 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITR 169
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT+KALV+ELK MSKEVEDSELADVAAVSAGNN+EVG+MIAEAMSKVGRKGVVTLEE
Sbjct: 170 GIEKTAKALVNELKLMSKEVEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEE 229
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VEY+NCKLLLVDKK+TNARDL+ VLED
Sbjct: 230 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKVTNARDLVGVLED 289
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG T
Sbjct: 290 AIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGAT 349
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VIR+EVGL+LDK GKEVLGNASKVVLTK+ TTIVGDG+TQ+AV+KRV QIR LIE AEQD
Sbjct: 350 VIREEVGLSLDKAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQD 409
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA CTL
Sbjct: 410 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 469
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LRL+SKVDAIK+TL+NDEEKVGA+IVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 470 LRLASKVDAIKDTLENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEKV 521
|
|
| TAIR|locus:2028751 Cpn60beta4 "chaperonin-60beta4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1605 (570.0 bits), Expect = 6.2e-165, P = 6.2e-165
Identities = 305/471 (64%), Positives = 390/471 (82%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++HFN+DG KKLQ G + +A L+GVTLGPKGRNVVL++KYG P+IVNDG TV KE
Sbjct: 39 AAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKE 98
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELEDP+EN+G KLVRQA AKTNDLAGDG+TTS++LA GLI EG+KV++AG NP+ + RG
Sbjct: 99 IELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARG 158
Query: 182 IEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
IEKT+KALV ELK MS+E+ED ELA VAAVSAGN+YEVGNMI+ A +VGR GVVT+E+G
Sbjct: 159 IEKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKG 218
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
K N L +VEGMQF+RGY+SPYFVTD K E+ +CKLLLVDKKITN +D+ +L+ A
Sbjct: 219 KYLVNNLEIVEGMQFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILDSA 278
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
++ +P+LI+AEDIEQ+ALA ++ NKL+G LK+AA+KAP FGERKS LDD+AI TG TV
Sbjct: 279 VKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGATV 338
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
IRDE+GL+L+K GKEVLG A +V++TKD+T IV +G TQ AV +RV+QI+ LIEN E+++
Sbjct: 339 IRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEENF 398
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLL 481
+++ LNER+A+LSGG+A+IQVGA T+ ELK+K+L+VEDALNATK+A C LL
Sbjct: 399 QKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCALL 458
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
RL++KVD IKETLDN E+K+GA+I K+AL YP++LIAKNA NG++V EKV
Sbjct: 459 RLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEKV 509
|
|
| UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
Identities = 260/471 (55%), Positives = 350/471 (74%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + +N + A + L+ G++ LA+ V VTLGPKGRNVVLE K+G+P+I+NDG+T+AKE+
Sbjct: 2 AKSIIYNDE--ARRALERGMDILAEAVAVTLGPKGRNVVLEKKFGSPQIINDGITIAKEI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELED VEN G L+RQAA+KTND+AGDGTTT+ VLA ++ EG++ VAAGANP+ + RGI
Sbjct: 60 ELEDHVENTGVSLIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
+K + LV+ +K+ ++ V DS+ +A V A+SAGN+ EVG MIA AM KVG++GV++LEEG
Sbjct: 120 DKATDFLVARIKEHAQPVGDSKAIAQVGAISAGNDEEVGQMIANAMDKVGQEGVISLEEG 179
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS L + EGM+FD+GYISPYFVTD+E+M E+ ++L+ DKKI +DL+ +LE
Sbjct: 180 KSMTTELEITEGMRFDKGYISPYFVTDAERMEAVLEDPRILITDKKINLVQDLVPILEQV 239
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
R P+LIIAEDIE+EALATLVVN+LRG L +AA+KAPGFG+R+ Q L+DIA LTGG V
Sbjct: 240 ARQGKPLLIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKQMLEDIATLTGGQV 299
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I ++ GL L+ + LG+A ++ +TKD TTIV +G+ + AV R QIR IE + Y
Sbjct: 300 ISEDAGLKLESATVDSLGSARRINITKDNTTIVAEGN-EAAVKSRCEQIRRQIEETDSSY 358
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLL 481
++EKL ER+AKL+GGVAVI+VGA TETE+K++KLR+EDA+NATKAA TL
Sbjct: 359 DKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLA 418
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
L+ +++ DEE GA IV RAL PLK IA+NAG NG+V+SE+V
Sbjct: 419 HLAPQLEDWATGNLKDEELTGALIVARALPAPLKRIAENAGQNGAVISERV 469
|
|
| TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 252/473 (53%), Positives = 349/473 (73%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK L F+ + + + GV LA+ V VTLGPKGRNVVL+ +GAP I DGV+VAKE
Sbjct: 2 AAKVLKFSHE--VLHAMSRGVEVLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A++T+D AGDGTTT+ VLAQ ++ EG+K V AG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVKEVASRTSDDAGDGTTTATVLAQAILVEGIKAVIAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K A V+ELK++SK +D + +A V +SA ++ +G++IAEAM KVG++GV+T+E+
Sbjct: 120 IDKAVTAAVAELKKISKPCKDQKAIAQVGTISANSDKSIGDIIAEAMEKVGKEGVITVED 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
G EN L VVEGMQFDRGY+SPYF+ + + M+ E EN +LLVDKKI+N R+LI +LE+
Sbjct: 180 GSGLENALEVVEGMQFDRGYLSPYFINNQQNMSAELENPFILLVDKKISNIRELIPLLEN 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+L+IAEDIE EALATLVVN +RG +K+AA+KAPGFG+R+ L DIA+LTGG
Sbjct: 240 VAKSGRPLLVIAEDIEGEALATLVVNNIRGVVKVAAVKAPGFGDRRKAMLQDIAVLTGGK 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQ 419
VI +EVGL+L+ + LG+A +VV+TKD TTI+ G G D + RV QIR IEN+
Sbjct: 300 VISEEVGLSLEAASLDDLGSAKRVVVTKDDTTIIDGSGDAGD-IKNRVEQIRKEIENSSS 358
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCT 479
DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA
Sbjct: 359 DYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVA 418
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
L+R+ +D+++ ++N++++VG +I +RA+ YPL I KN GV +VV++KV
Sbjct: 419 LIRVLKSLDSVE--VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKV 469
|
|
| TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 258/473 (54%), Positives = 344/473 (72%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AA+ + F+++G + GVN LAD V VTLGPKGRNVV+E +G+P I DGVTVAKE
Sbjct: 2 AARIIKFDQEG--RNAILKGVNTLADAVKVTLGPKGRNVVIEKAFGSPLITKDGVTVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ + +G K+VAAG NP+ I RG
Sbjct: 60 IELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRG 119
Query: 182 IEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K + +V+ELK +SK ++D E+A V +SA N+ +G++IA+AM KVG++GV+T+EE
Sbjct: 120 IDKAVETIVAELKSISKPIKDHKEIAQVGTISANNDKTIGDIIAQAMEKVGKEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K+ E L VEGMQFDRGY+SPYFVTD E+M EN +L+ DKKI+N +DL+ VLE
Sbjct: 180 AKAMETSLETVEGMQFDRGYLSPYFVTDPERMEASLENAMILIHDKKISNMKDLLPVLEQ 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+LIIAEDIE EALATLVVNKLRG L I A+KAPGFG+R+ L+DIAILTGG
Sbjct: 240 TAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQ 419
VI +E+G L+ ++LG A ++ + KD TTI+ GDG D + RV QIR IE
Sbjct: 300 VISEEIGNKLENTTMDMLGRAKRITVDKDNTTIIDGDGKEAD-IQGRVKQIRAQIEETTS 358
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCT 479
DY+REKL ER+AKL GGVAVI+VGA TETE+KEKK RVEDAL+AT+AA
Sbjct: 359 DYDREKLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALHATRAAVDEGIVPGGGVA 418
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LR + +DA+ +L E++ G +++KR+L P++ IA+NAGV+GS+V +KV
Sbjct: 419 YLRALASLDAL--SLPT-EQQFGVNVIKRSLEEPIRQIAQNAGVDGSIVVDKV 468
|
|
| TIGR_CMR|CHY_0807 CHY_0807 "chaperonin GroL" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 256/472 (54%), Positives = 340/472 (72%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
A K + F +D A + L+ GVN LAD V VTLGPKGRNVVLE K+G+P+I+NDGV++A+E
Sbjct: 2 AGKQILFRED--ARRALERGVNALADAVKVTLGPKGRNVVLEKKFGSPQIINDGVSIARE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+EL DPVEN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+++ +G
Sbjct: 60 IELADPVENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVTAGANPMILRKG 119
Query: 182 IEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
IEK V E+K ++K VE SE +A VAA+SA N+ E+G +IAEAM KVG+ GV+T+EE
Sbjct: 120 IEKAVAKAVEEIKAIAKPVETSEAIAQVAAISA-NDEEIGKLIAEAMEKVGKDGVITVEE 178
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
+ L VVEGM FDRGYISPY +TD +KM + +L+ DKKI+ DL+ +LE
Sbjct: 179 SQGLGTTLEVVEGMSFDRGYISPYMITDPDKMEAILNDPYILITDKKISAIADLLPILEK 238
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P+LIIAED+E EALATLVVNKLRG L A+KAPGFG+R+ L+DIAILT G
Sbjct: 239 VVQTGKPLLIIAEDVEGEALATLVVNKLRGTLTCVAVKAPGFGDRRKAMLEDIAILTNGQ 298
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
V+ +E+G L+ +LG A +V + K+ T IVG + +A+ KR+AQI+ IE D
Sbjct: 299 VVSEELGFKLENATLSMLGRAKQVRVKKEETIIVGGQGSPEAIEKRIAQIKKQIEETTSD 358
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTL 480
++REKL ER+AKL+GGVAVIQVGA TETE+KEKKLR+EDALNAT+AA T
Sbjct: 359 FDREKLQERLAKLAGGVAVIQVGAATETEMKEKKLRIEDALNATRAAVEEGIVAGGGTTY 418
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
+ + ++ +++T DE + G IV++AL PLK IA NAG+ GSV+ EKV
Sbjct: 419 IHIIKALEELEKTATGDE-RTGIAIVRKALEEPLKQIAINAGLEGSVIVEKV 469
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| UNIPROTKB|Q9KNR7 groL1 "60 kDa chaperonin 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 256/472 (54%), Positives = 340/472 (72%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F D A K+ GVN LAD V VTLGPKGRNVVL+ +GAP I DGV+VA+E
Sbjct: 2 AAKDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVARE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED +N+GA++V++ A++ ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 60 IELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K A V ELK +S D++ +A V +SA ++ VGN+IAEAM KVGR GV+T+EE
Sbjct: 120 IDKAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
G++ ++ L VVEGMQFDRGY+SPYF+ + E +VE +N +LLVDKKI+N R+L+ VLE
Sbjct: 180 GQALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEG 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VAKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGV 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +E+GL L+K E LG A +V +TK+ +TI+ Q A+ RVAQIR IE A D
Sbjct: 300 VISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTL 480
Y++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA L
Sbjct: 360 YDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
+R +SK+ ++ DN+E+ VG + RA+ PL+ I KNAG SVV+ V
Sbjct: 420 IRAASKLSSLVG--DNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNV 469
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| TIGR_CMR|SPO_0887 SPO_0887 "chaperonin, 60 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 259/473 (54%), Positives = 345/473 (72%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ FN + A K+ GVN LAD V VTLGPKGRNVVL+ +GAP+I DGV+VAKE
Sbjct: 2 AAKDVKFNTE--ARNKMLKGVNILADAVKVTLGPKGRNVVLDKSFGAPRITKDGVSVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A++TND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ + +V +K S+ V DS E+A V +SA E+G IAEAM KVG +GV+T+EE
Sbjct: 120 IDLATAKVVEAIKAASRPVNDSAEVAQVGTISANGESEIGRQIAEAMQKVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K E VVEGMQFDRGY+SPYFVT+++KM E E+C +LL +KK+++ + ++ +LE
Sbjct: 180 NKGLETETDVVEGMQFDRGYLSPYFVTNADKMIAELEDCMILLHEKKLSSLQPMVPLLEQ 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
I+ P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA-VSKRVAQIRTLIENAEQ 419
VI +++G+ L+ V ++LG A K+ +TKD TTIV DG+ + A + RVAQIRT IE
Sbjct: 300 VISEDLGMKLESVTMDMLGTAKKISITKDETTIV-DGAGEKAEIEARVAQIRTQIEETTS 358
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCT 479
DY+REKL ER+AKL+GGVAVI+VG TE E+KE+K RV+DALNAT+AA
Sbjct: 359 DYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGVVVGGGVA 418
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
L++ + KV A E N ++ G +IV++A+ PL+ IA+NAGV+G+VV+ KV
Sbjct: 419 LVQ-AGKVLADLEGA-NADQTAGINIVRKAIEAPLRQIAENAGVDGAVVAGKV 469
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| TIGR_CMR|VC_2664 VC_2664 "chaperonin, 60 Kd subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 256/472 (54%), Positives = 340/472 (72%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F D A K+ GVN LAD V VTLGPKGRNVVL+ +GAP I DGV+VA+E
Sbjct: 2 AAKDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVARE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED +N+GA++V++ A++ ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 60 IELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K A V ELK +S D++ +A V +SA ++ VGN+IAEAM KVGR GV+T+EE
Sbjct: 120 IDKAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
G++ ++ L VVEGMQFDRGY+SPYF+ + E +VE +N +LLVDKKI+N R+L+ VLE
Sbjct: 180 GQALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEG 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VAKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGV 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +E+GL L+K E LG A +V +TK+ +TI+ Q A+ RVAQIR IE A D
Sbjct: 300 VISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTL 480
Y++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA L
Sbjct: 360 YDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
+R +SK+ ++ DN+E+ VG + RA+ PL+ I KNAG SVV+ V
Sbjct: 420 IRAASKLSSLVG--DNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNV 469
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A4IJV3 | CH60_GEOTN | No assigned EC number | 0.5753 | 0.8721 | 0.8592 | yes | no |
| Q2JKV7 | CH602_SYNJB | No assigned EC number | 0.6178 | 0.8778 | 0.8664 | yes | no |
| Q05972 | CH601_SYNY3 | No assigned EC number | 0.5711 | 0.8778 | 0.8632 | N/A | no |
| Q8YVS8 | CH602_NOSS1 | No assigned EC number | 0.5978 | 0.8778 | 0.8339 | yes | no |
| B0CFQ6 | CH601_ACAM1 | No assigned EC number | 0.6137 | 0.8740 | 0.8333 | yes | no |
| Q7WVY0 | CH602_ANASL | No assigned EC number | 0.5723 | 0.8778 | 0.8384 | N/A | no |
| Q0I885 | CH601_SYNS3 | No assigned EC number | 0.5553 | 0.8778 | 0.8444 | yes | no |
| A5G9I2 | CH60_GEOUR | No assigned EC number | 0.5572 | 0.8721 | 0.8451 | yes | no |
| P22034 | CH602_SYNY3 | No assigned EC number | 0.5860 | 0.8590 | 0.8278 | N/A | no |
| A2C7E2 | CH602_PROM3 | No assigned EC number | 0.5600 | 0.8721 | 0.8226 | yes | no |
| Q9LJE4 | CPNB2_ARATH | No assigned EC number | 0.8665 | 0.9793 | 0.8741 | no | no |
| Q119S1 | CH601_TRIEI | No assigned EC number | 0.6106 | 0.8796 | 0.8342 | yes | no |
| P12834 | CH601_SYNP6 | No assigned EC number | 0.5732 | 0.8778 | 0.8584 | yes | no |
| Q747C7 | CH60_GEOSL | No assigned EC number | 0.5602 | 0.8740 | 0.8547 | yes | no |
| P22879 | CH60_SYNE7 | No assigned EC number | 0.5732 | 0.8778 | 0.8584 | yes | no |
| A7I0W5 | CH60_CAMHC | No assigned EC number | 0.5690 | 0.8721 | 0.8545 | yes | no |
| Q7MBB4 | CH602_GLOVI | No assigned EC number | 0.6198 | 0.8665 | 0.8336 | yes | no |
| Q2LTG7 | CH602_SYNAS | No assigned EC number | 0.5690 | 0.8740 | 0.8532 | yes | no |
| Q37757 | CH60_CYAPA | No assigned EC number | 0.5562 | 0.8778 | 0.8632 | N/A | no |
| Q67KB8 | CH60_SYMTH | No assigned EC number | 0.5583 | 0.8778 | 0.8648 | yes | no |
| P51349 | CH60_PORPU | No assigned EC number | 0.5550 | 0.8778 | 0.8844 | N/A | no |
| B9LZ35 | CH60_GEOSF | No assigned EC number | 0.5605 | 0.8740 | 0.8469 | yes | no |
| Q3M6L5 | CH602_ANAVT | No assigned EC number | 0.6042 | 0.8778 | 0.8339 | yes | no |
| Q9AMJ8 | CH601_ANASL | No assigned EC number | 0.5711 | 0.8778 | 0.8600 | N/A | no |
| A9NA82 | CH60_COXBR | No assigned EC number | 0.5496 | 0.8759 | 0.8442 | yes | no |
| Q2JXD4 | CH601_SYNJA | No assigned EC number | 0.6157 | 0.8778 | 0.8616 | yes | no |
| P0A338 | CH602_THEVL | No assigned EC number | 0.5936 | 0.8778 | 0.8600 | N/A | no |
| P0A337 | CH602_THEEB | No assigned EC number | 0.5936 | 0.8778 | 0.8600 | yes | no |
| O50323 | CH601_THEVL | No assigned EC number | 0.5605 | 0.8778 | 0.8568 | N/A | no |
| Q8R5X7 | CH60_FUSNN | No assigned EC number | 0.5605 | 0.8721 | 0.8608 | yes | no |
| Q7V643 | CH601_PROMM | No assigned EC number | 0.5622 | 0.8703 | 0.8180 | yes | no |
| P21241 | RUBB_BRANA | No assigned EC number | 0.8670 | 0.9830 | 0.8894 | N/A | no |
| P21240 | CPNB1_ARATH | No assigned EC number | 0.8707 | 0.9830 | 0.8716 | yes | no |
| Q162U5 | CH602_ROSDO | No assigned EC number | 0.5611 | 0.8778 | 0.8537 | yes | no |
| Q43831 | RUBB_SECCE | No assigned EC number | 0.8938 | 0.7969 | 0.8496 | N/A | no |
| P08927 | RUBB_PEA | No assigned EC number | 0.8475 | 0.9642 | 0.8621 | N/A | no |
| C0Z361 | CPNB3_ARATH | No assigned EC number | 0.8646 | 0.9793 | 0.8726 | no | no |
| A4J8H4 | CH60_DESRM | No assigned EC number | 0.5699 | 0.8721 | 0.8560 | yes | no |
| B9L698 | CH60_NAUPA | No assigned EC number | 0.5665 | 0.8759 | 0.8550 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_LG_III2625 | hypothetical protein (607 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XIV.2088.1 | hypothetical protein (955 aa) | • | 0.563 | |||||||
 | estExt_Genewise1_v1.C_LG_III0383 | hypothetical protein (681 aa) | • | • | 0.526 | ||||||
 | estExt_fgenesh4_pm.C_LG_I0780 | hypothetical protein (97 aa) | • | • | 0.524 | ||||||
 | estExt_Genewise1_v1.C_LG_VIII0130 | hypothetical protein (97 aa) | • | • | 0.519 | ||||||
 | estExt_fgenesh4_pg.C_LG_X1007 | hypothetical protein (97 aa) | • | • | 0.495 | ||||||
 | estExt_Genewise1_v1.C_LG_XVIII0619 | hypothetical protein (258 aa) | • | • | • | • | 0.490 | ||||
 | estExt_fgenesh4_pm.C_LG_IX0449 | SubName- Full=Putative uncharacterized protein; (97 aa) | • | • | 0.480 | ||||||
 | estExt_Genewise1_v1.C_280199 | SubName- Full=Putative uncharacterized protein; (256 aa) | • | • | • | • | 0.480 | ||||
 | rps3 | RecName- Full=30S ribosomal protein S3, chloroplastic; (74 aa) | • | 0.433 | |||||||
 | grail3.3134000101 | Predicted protein (100 aa) | • | 0.429 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 532 | |||
| PLN03167 | 600 | PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr | 0.0 | |
| PRK00013 | 542 | PRK00013, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| cd03344 | 520 | cd03344, GroEL, GroEL_like type I chaperonin | 0.0 | |
| PRK12849 | 542 | PRK12849, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| TIGR02348 | 524 | TIGR02348, GroEL, chaperonin GroL | 0.0 | |
| PTZ00114 | 555 | PTZ00114, PTZ00114, Heat shock protein 60; Provisi | 0.0 | |
| CHL00093 | 529 | CHL00093, groEL, chaperonin GroEL | 0.0 | |
| PRK12850 | 544 | PRK12850, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| PRK12851 | 541 | PRK12851, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| PRK12852 | 545 | PRK12852, groEL, chaperonin GroEL; Reviewed | 1e-179 | |
| PRK14104 | 546 | PRK14104, PRK14104, chaperonin GroEL; Provisional | 1e-150 | |
| COG0459 | 524 | COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po | 1e-139 | |
| cd00309 | 464 | cd00309, chaperonin_type_I_II, chaperonin families | 1e-107 | |
| pfam00118 | 481 | pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami | 5e-92 | |
| cd03333 | 209 | cd03333, chaperonin_like, chaperonin_like superfam | 2e-30 | |
| TIGR02343 | 532 | TIGR02343, chap_CCT_epsi, T-complex protein 1, eps | 1e-14 | |
| cd03339 | 526 | cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty | 8e-13 | |
| TIGR02339 | 519 | TIGR02339, thermosome_arch, thermosome, various su | 5e-12 | |
| cd03343 | 517 | cd03343, cpn60, cpn60 chaperonin family | 5e-12 | |
| TIGR02345 | 523 | TIGR02345, chap_CCT_eta, T-complex protein 1, eta | 9e-12 | |
| cd03338 | 515 | cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type | 3e-11 | |
| TIGR02342 | 517 | TIGR02342, chap_CCT_delta, T-complex protein 1, de | 2e-10 | |
| TIGR02347 | 531 | TIGR02347, chap_CCT_zeta, T-complex protein 1, zet | 3e-10 | |
| cd03340 | 522 | cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I | 1e-09 | |
| cd03336 | 517 | cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type | 1e-09 | |
| PTZ00212 | 533 | PTZ00212, PTZ00212, T-complex protein 1 subunit be | 1e-09 | |
| TIGR02341 | 518 | TIGR02341, chap_CCT_beta, T-complex protein 1, bet | 2e-09 | |
| cd03342 | 484 | cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type | 3e-09 | |
| TIGR02340 | 536 | TIGR02340, chap_CCT_alpha, T-complex protein 1, al | 1e-06 | |
| TIGR02346 | 531 | TIGR02346, chap_CCT_theta, T-complex protein 1, th | 2e-06 | |
| cd03337 | 480 | cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type | 2e-05 | |
| cd03341 | 472 | cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type | 2e-05 | |
| cd03335 | 527 | cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type | 2e-05 | |
| TIGR02344 | 525 | TIGR02344, chap_CCT_gamma, T-complex protein 1, ga | 3e-05 |
| >gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Score = 919 bits (2377), Expect = 0.0
Identities = 478/532 (89%), Positives = 505/532 (94%), Gaps = 7/532 (1%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTA SS+ S+ APNG S N+LSS ASISSSSFGRRQSV LRR+R+PK+
Sbjct: 1 MASTFTATSSVGSLAAPNGH-------KSDNRLSSFASISSSSFGRRQSVRLRRSRSPKV 53
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAK
Sbjct: 54 KAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 113
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPV ITR
Sbjct: 114 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITR 173
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT+KALV ELK+MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE
Sbjct: 174 GIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 233
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VEY+NCKLLLVDKKITNARDLI +LED
Sbjct: 234 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILED 293
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AIRG YP+LIIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGGT
Sbjct: 294 AIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGT 353
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VIR+EVGL+LDKVGKEVLG A+KVVLTKDTTTIVGDGSTQ+AV+KRVAQI+ LIE AEQD
Sbjct: 354 VIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQD 413
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 414 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 473
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LRL+SKVDAIK+TL+NDE+KVGADIVKRAL YPLKLIAKNAGVNGSVVSEKV
Sbjct: 474 LRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 525
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Length = 600 |
| >gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 703 bits (1817), Expect = 0.0
Identities = 293/472 (62%), Positives = 361/472 (76%), Gaps = 5/472 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AKD+ F +D A +KL GVNKLAD V VTLGPKGRNVVLE +GAP I DGVTVAKE
Sbjct: 1 MAKDIKFGED--ARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RG
Sbjct: 59 IELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K +A V ELK++SK VED E+A VA +SA + E+G +IAEAM KVG++GV+T+EE
Sbjct: 119 IDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEE 178
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K E L VVEGMQFDRGY+SPYFVTD EKM E EN +L+ DKKI+N +DL+ VLE
Sbjct: 179 SKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ 238
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+LIIAED+E EALATLVVNKLRG LK+ A+KAPGFG+R+ L+DIAILTGGT
Sbjct: 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGT 298
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +E+GL L+ E LG A KVV+TKD TTIV ++A+ RVAQI+ IE D
Sbjct: 299 VISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSD 358
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEGIV GGG L
Sbjct: 359 YDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVAL 418
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LR + ++A+K N +E G +IV RAL PL+ IA+NAG+ GSVV EKV
Sbjct: 419 LRAAPALEALK--GLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKV 468
|
Length = 542 |
| >gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Score = 693 bits (1792), Expect = 0.0
Identities = 294/470 (62%), Positives = 365/470 (77%), Gaps = 5/470 (1%)
Query: 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVE 123
KD+ F ++ A K L GVNKLAD V VTLGPKGRNVV+E +G+PKI DGVTVAKE+E
Sbjct: 1 KDIKFGEE--ARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIE 58
Query: 124 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE 183
LEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLA+ +I EG+K VAAGANP+ + RGIE
Sbjct: 59 LEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIE 118
Query: 184 KTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGK 242
K +A+V ELK++SK V+ E+A VA +SA + E+G +IAEAM KVG+ GV+T+EEGK
Sbjct: 119 KAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGK 178
Query: 243 SAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302
+ E L VVEGMQFDRGY+SPYFVTD EKM VE EN +LL DKKI++ ++L+ +LE
Sbjct: 179 TLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238
Query: 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVI 362
+ P+LIIAED+E EALATLVVNKLRG LK+ A+KAPGFG+R+ L+DIAILTGGTVI
Sbjct: 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVI 298
Query: 363 RDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422
+E+GL L+ V E LG A KVV+TKD TTI+G + A+ R+AQIR IE DY+
Sbjct: 299 SEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYD 358
Query: 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR 482
+EKL ER+AKLSGGVAVI+VG TE ELKEKK RVEDALNAT+AAVEEGIV GGG LLR
Sbjct: 359 KEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLR 418
Query: 483 LSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
S +D +K N +EK+G +IV+RAL PL+ IA+NAGV+GSVV EKV
Sbjct: 419 ASPALDKLKA--LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKV 466
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520 |
| >gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 661 bits (1707), Expect = 0.0
Identities = 276/472 (58%), Positives = 359/472 (76%), Gaps = 5/472 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AK + F+++ A + L+ GVNKLAD V VTLGPKGRNVV++ +GAP I DGV++AKE
Sbjct: 1 MAKIIKFDEE--ARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ L+ EG+K VAAGANP+ + RG
Sbjct: 59 IELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K +A+V ELK +++ V S E+A VA +SA + E+G +IAEAM KVG+ GV+T+EE
Sbjct: 119 IDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEE 178
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K+ E L V EGMQFDRGY+SPYFVTD E+M E+ +LL DKKI++ +DL+ +LE
Sbjct: 179 SKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK 238
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+LIIAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+ L+DIAILTGGT
Sbjct: 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGT 298
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +++GL L++V + LG A +V +TKD TTIV ++A+ RVAQIR IE D
Sbjct: 299 VISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSD 358
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VGA TE ELKE+K RVEDALNAT+AAVEEGIV GGG L
Sbjct: 359 YDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVAL 418
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LR + +D + N ++ G +IV+RAL PL+ IA+NAG++GSVV KV
Sbjct: 419 LRAAKALDELAGL--NGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKV 468
|
Length = 542 |
| >gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL | Back alignment and domain information |
|---|
Score = 638 bits (1649), Expect = 0.0
Identities = 289/471 (61%), Positives = 367/471 (77%), Gaps = 5/471 (1%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + F+++ A K L GV+KLAD V VTLGPKGRNVVLE +GAP I DGVTVAKE+
Sbjct: 1 AKQIKFDEE--ARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEI 58
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELED EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGI
Sbjct: 59 ELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGI 118
Query: 183 EKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EK +A+V ELK++SK V+ E+A VA +SA N+ E+G++IAEAM KVG+ GV+T+EE
Sbjct: 119 EKAVEAVVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEES 178
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS E L VVEGMQFDRGYISPYFVTD+EKM VE EN +L+ DKKI+N +DL+ +LE
Sbjct: 179 KSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKV 238
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
+ P+LIIAED+E EALATLVVNKLRG L + A+KAPGFG+R+ L+DIAILTGG V
Sbjct: 239 AQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQV 298
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I +E+GL L++V + LG A KV + KD TTIV + A+ RVAQI+ IE DY
Sbjct: 299 ISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDY 358
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+REKL ER+AKL+GGVAVI+VGA TETE+KEKKLR+EDALNAT+AAVEEGIV GGG LL
Sbjct: 359 DREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRIEDALNATRAAVEEGIVPGGGVALL 418
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
R ++ ++ +K D ++E +G DIVKRAL PL+ IA+NAG++G+VV+EKV
Sbjct: 419 RAAAALEGLKG--DGEDEAIGIDIVKRALEAPLRQIAENAGLDGAVVAEKV 467
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524 |
| >gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Score = 577 bits (1490), Expect = 0.0
Identities = 246/482 (51%), Positives = 340/482 (70%), Gaps = 5/482 (1%)
Query: 54 RARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVN 113
+ + K++ F + A + L G+ +LAD V VTLGPKGRNV++E +YG+PKI
Sbjct: 5 MFSSRYRFKGKEIRFGDE--ARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITK 62
Query: 114 DGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGA 173
DGVTVAK +E D EN+GA+L+RQ A+KTND AGDGTTT+ +LA+ + EG K VAAG
Sbjct: 63 DGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGL 122
Query: 174 NPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGR 232
NP+ + RGI+ K ++ LK+ S+ V+ E + +VA +SA + E+G++IA+AM KVG+
Sbjct: 123 NPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGK 182
Query: 233 KGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNAR 292
G +T+E+GK+ E+ L VVEGM FDRGYISPYFVT+ + VE EN +L+ DKKI++ +
Sbjct: 183 DGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQ 242
Query: 293 DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDD 352
++ +LE A++ P+LIIAED+E EAL TL++NKLRG LK+ A+KAPGFG+ + L D
Sbjct: 243 SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQD 302
Query: 353 IAILTGGTVI-RDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIR 411
IA+LTG TV+ D VGL LD +LG+A KV +TKD T I+ G + + +RV +R
Sbjct: 303 IAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLR 362
Query: 412 TLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 471
+ IE +Y++EKL ER+AKLSGGVAVI+VG +E E+ EKK R+EDALNAT+AAVEEG
Sbjct: 363 SQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG 422
Query: 472 IVVGGGCTLLRLSSKVDAIKETLDND-EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530
IV GGG LLR S +D ++E + +++ G IV+ AL P K IA+NAGV G+VV E
Sbjct: 423 IVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVE 482
Query: 531 KV 532
K+
Sbjct: 483 KI 484
|
Length = 555 |
| >gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL | Back alignment and domain information |
|---|
Score = 568 bits (1467), Expect = 0.0
Identities = 265/461 (57%), Positives = 360/461 (78%), Gaps = 3/461 (0%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
A + L+ G++ LA+ V VTLGPKGRNVVLE KYG+P+IVNDGVT+AKE+ELED +EN G
Sbjct: 11 ARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGV 70
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
L+RQAA+KTND+AGDGTTT+ VLA ++ +G+K VAAGANP+ + RGIEK ++ +VS++
Sbjct: 71 ALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQI 130
Query: 194 KQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVE 252
+ ++ VED + + VA++SAGN+ EVG+MIA+A+ KVGR+GV++LEEGKS L + E
Sbjct: 131 AEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITE 190
Query: 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNAR-DLINVLEDAIRGAYPILII 311
GM+F++G+ISPYFVTD+E+M V EN +LL DKKIT + DL+ +LE + P+LII
Sbjct: 191 GMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLII 250
Query: 312 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALD 371
AED+E+EALATLV+NKLRG + + A++APGFG+R+ L+DIAILTGG VI ++ GL+L+
Sbjct: 251 AEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLE 310
Query: 372 KVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIA 431
+ ++LG A ++++TKD+TTI+ DG ++ V R Q+R IE A+ YE+EKL ER+A
Sbjct: 311 TIQLDLLGQARRIIVTKDSTTIIADG-NEEQVKARCEQLRKQIEIADSSYEKEKLQERLA 369
Query: 432 KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIK 491
KLSGGVAVI+VGA TETE+K+KKLR+EDA+NATKAAVEEGIV GGG TL+ LS +
Sbjct: 370 KLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWA 429
Query: 492 ETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
+ ++E +GA IV RA+ PLK IA+NAG NGSV+ EKV
Sbjct: 430 KNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKV 470
|
Length = 529 |
| >gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 568 bits (1467), Expect = 0.0
Identities = 270/472 (57%), Positives = 350/472 (74%), Gaps = 5/472 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++ F+ D A +L GVN LA+ V VTLGPKGRNVVLE +GAP+I DGVTVAKE
Sbjct: 2 AAKEIRFSTD--ARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A+KTNDLAGDGTTT+ VLAQ ++ EG K+VAAG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ A+V ELK+++K+V S E+A VA +SA + +G MIAEAM KVG++GV+T+EE
Sbjct: 120 IDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K+ L VVEGMQFDRGY+SPYFVT+ EKM E E+ +LL +KKI+N +DL+ +LE
Sbjct: 180 AKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P+LIIAED+E EALATLVVNKLRG LK A+KAPGFG+R+ L+DIA+LTGG
Sbjct: 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +++G+ L+ V ++LG A +V++TK+ TTI+ + + RV QIR IE D
Sbjct: 300 VISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VG TE E+KEKK RV+DAL+AT+AAVEEGIV GGG L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LR S + +K N +E G DIV+RAL PL+ IA NAG GSVV KV
Sbjct: 420 LRARSALRGLKG--ANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKV 469
|
Length = 544 |
| >gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 556 bits (1435), Expect = 0.0
Identities = 271/472 (57%), Positives = 358/472 (75%), Gaps = 5/472 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++ F+ + A +K+ GVN LAD V VTLGPKGRNVV++ +GAP I NDGVT+AKE
Sbjct: 2 AAKEVKFHVE--AREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAGANP+ + RG
Sbjct: 60 IELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I++ A+V ELK ++ V ++E+A VA +SA + E+G ++AEAM KVG +GV+T+EE
Sbjct: 120 IDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K+AE L VVEGMQFDRGY+SPYFVTD++KM E E+ +L+ +KKI+N +DL+ VLE
Sbjct: 180 SKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P+LIIAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+ L+DIAILTGGT
Sbjct: 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGT 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +++G+ L+ V E LG A KVV+ K+ TTI+ ++ + RVAQIR IE D
Sbjct: 300 VISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AAVEEGIV GGG L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LR +D K N +++ G +IV+RAL P++ IA+NAG GSVV K+
Sbjct: 420 LRAVKALD--KLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKL 469
|
Length = 541 |
| >gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 516 bits (1330), Expect = e-179
Identities = 258/472 (54%), Positives = 347/472 (73%), Gaps = 5/472 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F+ D A ++ GV+ LA+ V VTLGPKGRNVV+E +GAP+I DGVTVAKE
Sbjct: 2 AAKDVKFSGD--ARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++VR+ A+KTNDLAGDGTTT+ VLAQ ++ EG K VAAG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ A+V ++++ +K V S E+A V +SA + +G MIA+AM KVG +GV+T+EE
Sbjct: 120 IDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
KS E + +VEGM+FDRGY+SPYFVT++EKM VE ++ +LL +KK++ + ++ VLE
Sbjct: 180 NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P+LIIAED+E EALATLVVN+LRG LK+AA+KAPGFG+R+ L+DIAILTGG
Sbjct: 240 VVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
+I +++G+ L+ V ++LG A KVV+ K+ TTIV + + RV QI+ IE D
Sbjct: 300 LISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VG TE E+KEKK RVEDALNAT+AAV+EGIV GGG L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LR V I DN + + G +IV +AL P++ IA+NAGV GS+V K+
Sbjct: 420 LRAKKAVGRI--NNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKI 469
|
Length = 545 |
| >gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Score = 441 bits (1135), Expect = e-150
Identities = 251/472 (53%), Positives = 349/472 (73%), Gaps = 5/472 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
+AK++ F D A ++ GV+ LA+ V VTLGPKGRNVVL+ +GAP+I DGVTVAKE
Sbjct: 2 SAKEVKFGVD--ARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++VR+ A+K+ D AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ +A+V++L + SK+V + E+A V +SA + E+G +A+AM KVG +GV+T+EE
Sbjct: 120 IDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
KS E L VVEGMQFDRGYISPYFVT+++KM VE ++ +L+ +KK+++ +L+ +LE
Sbjct: 180 AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEA 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
I +++G+ L+ V ++LG A KV++ K+ TTIV + + RVAQI+ IE D
Sbjct: 300 AISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VG TE E+KE+K RV+DA++AT+AAVEEGIV GGG L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
LR S ++ IK ND++K G +IV++AL P + IA NAG +GSV+ K+
Sbjct: 420 LRASEQLKGIKT--KNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKI 469
|
Length = 546 |
| >gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 413 bits (1063), Expect = e-139
Identities = 205/483 (42%), Positives = 279/483 (57%), Gaps = 40/483 (8%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
K+ F +D A + LAD V TLGPKGRN +L G I NDGVT+ KE
Sbjct: 2 MGKERKFGED--ARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELE + GAKL+ + A K +D AGDGTTT+VVLA L+ E K++AAG +P +I RG
Sbjct: 60 IELE----HPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRG 115
Query: 182 IEKTSKALVSELKQMSKEVEDSELAD------VAAVSAGNNYEVGNMIAEAMSKVGRK-- 233
+ V ELK+++K V DSE VA+ SA ++ E+G ++ EA+ KVG++
Sbjct: 116 YRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQS 175
Query: 234 ---GVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITN 290
G++ ++E +E L VVEGM FD+GY+SPYF+ D EN K+LL+DKK+
Sbjct: 176 DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEI 230
Query: 291 ARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL 350
+ + LE I P+LIIAED E EALATLVVN LRG + +KAPG + YL
Sbjct: 231 KKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYL 289
Query: 351 DDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQI 410
+DIAILTG V ++++G L K LG A V + KD TTIV G +
Sbjct: 290 EDIAILTGRRVKKEDLGERLAK-----LGGAKIVSVLKDLTTIV-LGEGA------AGLV 337
Query: 411 RTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470
DY+ EKL ER AK +GGVA I V TE EL EK+ R+EDALN +AAVEE
Sbjct: 338 EETKTG---DYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEE 393
Query: 471 G-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVS 529
G IV GGG + + ++ T++ +E++G + RAL P + +A+NAG++ V
Sbjct: 394 GKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVL 453
Query: 530 EKV 532
K+
Sbjct: 454 SKL 456
|
Length = 524 |
| >gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II | Back alignment and domain information |
|---|
Score = 329 bits (845), Expect = e-107
Identities = 151/481 (31%), Positives = 218/481 (45%), Gaps = 104/481 (21%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
A N LAD V TLGPKG + +L G P I NDG T+ KE+E VE+ A
Sbjct: 9 ARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIE----VEHPAA 64
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
KL+ + A +D GDGTTT VVLA L+ E K++AAG +P I RG EK + + L
Sbjct: 65 KLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEIL 124
Query: 194 KQMSKEVEDS---ELADVAAVSAG------NNYEVGNMIAEAMSKVGR------KGVVTL 238
K+++ ++ EL VA S + +G ++ +A+ KVG+ GV+ +
Sbjct: 125 KEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRV 184
Query: 239 EEGKSAENM-LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINV 297
E+ K +V GM FD+GY+SPY M EN K+LL+D K+
Sbjct: 185 EKKKGGSLEDSELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLEY------- 230
Query: 298 LEDAIRGAYPILIIAED-IEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAIL 356
++IAE I+ EAL L L I A++ + + L+ IA
Sbjct: 231 -----------VVIAEKGIDDEALHYLAK------LGIMAVRR-----VRKEDLERIAKA 268
Query: 357 TGGTVIRDEVGLALDKVGKEVLGNASKVVLTK----DTTTIVGDGSTQDAVSKRVAQIRT 412
TG T++ L+ + E LG A V TK T I G
Sbjct: 269 TGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCK--------------- 308
Query: 413 LIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE-G 471
G VA I + TE EL E + + DAL A +AAVE+ G
Sbjct: 309 ---------------------GGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGG 347
Query: 472 IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
IV GGG + LS ++ + +TL +E++G + AL + +A+NAG++ V K
Sbjct: 348 IVPGGGAAEIELSKALEELAKTL-PGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTK 406
Query: 532 V 532
+
Sbjct: 407 L 407
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464 |
| >gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 289 bits (741), Expect = 5e-92
Identities = 144/484 (29%), Positives = 224/484 (46%), Gaps = 98/484 (20%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
LAD V TLGPKGRN +L + G I NDG T+ KE+E++ P AKL+ +AA +
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPA----AKLLVEAAKSQD 56
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-- 202
+ GDGTTT+VVLA L+ E K++ AG +P I RG E + + L+++S V D
Sbjct: 57 EEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD 116
Query: 203 SELADVAAVSAG------NNYEVGNMIAEAMS------KVGRKGVVTLEEGKSAENMLYV 250
+L +VA S + +G ++ +A+ VG GV+ +E G ++ +
Sbjct: 117 EDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGSLEDS--EL 174
Query: 251 VEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNARDLINV 297
+EG+ D+GY+SP M EN K+LL+D + L+
Sbjct: 175 IEGIVLDKGYLSP-------DMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERLLEA 227
Query: 298 LEDAIRGA--------YPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349
E + ++II + I+ AL L N + ++ K +
Sbjct: 228 EEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRV-----------KKED 276
Query: 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQ 409
L+ +A TG TV+ LD + + LG+A KV +G+ T
Sbjct: 277 LERLAKATGATVVSS-----LDDLEPDELGSAGKV-----EEREIGEDKT---------- 316
Query: 410 IRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE 469
T IE LSG VA I + T+ EL E + +EDALNA KAA++
Sbjct: 317 --TFIEG---------------CLSGKVATILLRGATDHELDELERAIEDALNAVKAALK 359
Query: 470 -EGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528
EG+V GGG L LS + +++ + +E++G + AL + +A+NAG++ V
Sbjct: 360 DEGVVPGGGAAELELSRALREYAKSV-SGKEQLGIEAFAEALEVIPRTLAENAGLDPIEV 418
Query: 529 SEKV 532
K+
Sbjct: 419 LAKL 422
|
This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 |
| >gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-30
Identities = 73/282 (25%), Positives = 104/282 (36%), Gaps = 86/282 (30%)
Query: 202 DSELADVAAVSAG-----NNYEVGNMIAEAMSKVGR------KGVVTLEEGKSAENM-LY 249
L VA S + +G ++ +A+ KVG GV+ +E+
Sbjct: 1 RELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSE 60
Query: 250 VVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPIL 309
+V G+ FD+GY SPY M EN K+LL+D + +
Sbjct: 61 LVVGVVFDKGYASPY-------MPKRLENAKILLLDCPLEY------------------V 95
Query: 310 IIAED-IEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGL 368
+IAE I+ AL L I A++ K + L+ IA TG T++
Sbjct: 96 VIAEKGIDDLALHYLAK------AGIMAVRR-----VKKEDLERIARATGATIVSS---- 140
Query: 369 ALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428
L+ + E LG A V TK + T IE +
Sbjct: 141 -LEDLTPEDLGTAELVEETKIGEEKL-----------------TFIEGCK---------- 172
Query: 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470
G A I + TE EL E K + DAL A +AAVEE
Sbjct: 173 -----GGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209 |
| >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 16/151 (10%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A ++ +LGPKG + +L S G + NDG T+ ++++++P+ AKL+ + + +
Sbjct: 39 VASILRTSLGPKGMDKMLISPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQD 94
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
D GDGTT VVLA L+ + +++ G +P+ I G E+ ++ V L+++S E+
Sbjct: 95 DEIGDGTTGVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVEHLEEISDEISADN 154
Query: 205 LADVAAVSAGNNYEVGNMIAEAMSKVGRKGV 235
NN E +I A + +G K V
Sbjct: 155 ----------NNRE--PLIQAAKTSLGSKIV 173
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 |
| >gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 8e-13
Identities = 45/151 (29%), Positives = 83/151 (54%), Gaps = 16/151 (10%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+++ +LGP+G + +L S G + NDG T+ ++++++ + AKL+ + + +
Sbjct: 35 VANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQD 90
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
D GDGTT VVLA L+ + K++ G +P+ I G E+ K V L++++ ++E S
Sbjct: 91 DEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP 150
Query: 205 LADVAAVSAGNNYEVGNMIAEAMSKVGRKGV 235
+N E +I AM+ +G K V
Sbjct: 151 ----------DNKE--PLIQTAMTSLGSKIV 169
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526 |
| >gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 5e-12
Identities = 100/427 (23%), Positives = 181/427 (42%), Gaps = 61/427 (14%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+ V TLGP+G + +L G I NDG T+ KE+++E P AK++ + A +
Sbjct: 28 VAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQD 83
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK--EVED 202
+ GDGTTT+VVLA L+ + ++ +P +I G K ++ + + +++ ED
Sbjct: 84 EEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGYRKAAEKALEIIDEIATKISPED 143
Query: 203 SE-LADVA-------AVSAGNNYEVGNMIAEAMSKV-----GRKGVVTLEE--------G 241
+ L VA A + ++ N++ EA+ +V K V L+ G
Sbjct: 144 RDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQVAELRGDGKYYVDLDNIKIVKKTGG 203
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
+ L VEG+ D+ + P M EN K+ L+D + + I+
Sbjct: 204 SIDDTEL--VEGIVVDKEVVHP-------GMPKRVENAKIALLDAPLEVEKTEIDA---E 251
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
IR P I ++EA+ +V+K+ A + G + YL IL V
Sbjct: 252 IRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQHYLAKAGILAVRRV 311
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
+ ++ G ++ + + T D V +R +
Sbjct: 312 KKSDIEKLARATGARIVSS------IDEITE--SDLGYAGLVEER------------KVG 351
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTL 480
E + + K V ++ G TE + E + ++DAL+ +A+E+G +V GGG
Sbjct: 352 EDKMVFVEGCKNPKAVTILLRGG-TEHVVDELERSLQDALHVVASALEDGKVVAGGGAVE 410
Query: 481 LRLSSKV 487
+ ++ ++
Sbjct: 411 IEIALRL 417
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519 |
| >gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+ V TLGPKG + +L G I NDG T+ KE+++E P AK++ + A +
Sbjct: 27 VAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQD 82
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE 201
+ GDGTTT+VVLA L+ + ++ +P +I G ++ + L +++ +V+
Sbjct: 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVD 139
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517 |
| >gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 9e-12
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
N +A+ + TLGP+G + ++ G + NDG T+ K +++ P AK +
Sbjct: 25 NACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDGATILKLLDIVHPA----AKTLVDI 80
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A + GDGTT+ V+LA L+ E + G +P LI RG + + ++K+++
Sbjct: 81 AKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRGYREALSLAIEKIKEIAVT 140
Query: 200 VEDSE 204
++ +
Sbjct: 141 IDSEK 145
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523 |
| >gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 9/132 (6%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD + +LGP+G + ++++ G I NDG T+ K++ + P + +L +K
Sbjct: 20 VADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVEL-----SKAQ 74
Query: 145 DL-AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-- 201
D+ AGDGTT+ VVLA L++ ++ G +P +I+ + +K V L MS V+
Sbjct: 75 DIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLN 134
Query: 202 -DSELADVAAVS 212
L A S
Sbjct: 135 DRESLIKSATTS 146
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515 |
| >gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD + +LGPKG + +++ G I NDG T+ K++ + P AK++ + + +
Sbjct: 21 VADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVLHPA----AKMLVELSKAQD 76
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
AGDGTT+ V+LA L+ +++ G +P +I+ + + + L +MS V+ S+
Sbjct: 77 IEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEAIKILDEMSIPVDLSD 136
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 |
| >gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
N L D++ LGPKG +L S G K+ DG + E++++ P A ++ +A
Sbjct: 23 NAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARA 78
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A +++ GDGTT++V+L L+ + + + G +P +IT G E K L+ L + +
Sbjct: 79 ATAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDKFKVK 138
Query: 200 VEDS 203
ED
Sbjct: 139 TEDE 142
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
N +AD V TLGP+G + ++ G I NDG T+ K +++ P AK +
Sbjct: 23 NACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDI 78
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A + GDGTT+ VVLA + E + G +P +I RG K + + ++K+++
Sbjct: 79 AKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVN 138
Query: 200 VE 201
++
Sbjct: 139 ID 140
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522 |
| >gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 85 LADLVGVTLGPKGRNVVLES--KYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142
+ DLV TLGPKG + +L+S + G + NDG T+ K + +++P AK++ +
Sbjct: 25 IGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKV 80
Query: 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED 202
+D GDGTT+ VLA L+ E K+VA +P I G + A L + +
Sbjct: 81 QDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSS 140
Query: 203 SELA 206
E A
Sbjct: 141 DEEA 144
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517 |
| >gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 75 MKKLQN--GVNKLADLVGVTLGPKGRNVVLES-----KYGAPKIVNDGVTVAKEVELEDP 127
+LQ+ G +ADLV TLGPKG + +L+ + G + NDG T+ K V L++P
Sbjct: 22 TARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNP 81
Query: 128 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
AK++ + ++ GDGTT+ VVLA L+ E K++ +P I G
Sbjct: 82 A----AKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEG 131
|
Length = 533 |
| >gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 81 GVNKLADLVGVTLGPKGRNVVLES-KYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
G + DLV TLGPKG + +L+S + NDG T+ K + ++N AK++
Sbjct: 22 GAIAVGDLVKSTLGPKGMDKILQSASSNTIMVTNDGATILKSI----GLDNPAAKVLVNI 77
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
+ +D GDGTT+ VLA L+ E K++ +P I G +KA + L + + +
Sbjct: 78 SKVQDDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYRLATKAALDALTKSAVD 137
Query: 200 VEDSE 204
+
Sbjct: 138 NSSDK 142
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518 |
| >gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
+ L D++ LGPKG +L S G K+ DG + E++++ P ++ A+ A
Sbjct: 19 SAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIAR----A 74
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A +D+ GDGTT++V+L L+ + + + G +P +IT G E + L+
Sbjct: 75 ATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVP 134
Query: 200 VE 201
VE
Sbjct: 135 VE 136
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484 |
| >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 84 KLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143
+A++V +LGP G + +L G I NDG T+ K +E+E P AK++ + A
Sbjct: 23 AVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQLQ 78
Query: 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE 201
+ GDGTT+ V++A L+ ++V +P I G K V +K+ +S V+
Sbjct: 79 DREVGDGTTSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEAVKYIKENLSVSVD 137
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 |
| >gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Query: 70 KDGYA-MKKLQNGVNK-------LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
K+GY M L+ V K L+ + +LGP G N ++ + + ND T+ +E
Sbjct: 7 KEGYRHMSGLEEAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRE 66
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+E++ P AKL+ A+ + GDGT +VLA L+ + +++ G +P I +G
Sbjct: 67 LEVQHPA----AKLLVMASEMQENEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKG 122
Query: 182 IEKTSKALVSELKQMSK-EVED 202
E K + L+++ E+ED
Sbjct: 123 YEMALKKAMEVLEELVVWEIED 144
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD++ LGP+ +L G + NDG + +E+++ P AK + + + +
Sbjct: 28 VADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHP----AAKSMIELSRTQD 83
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
+ GDGTT+ ++LA ++A + G +P +I + K + + L+++S V+ ++
Sbjct: 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVND 143
Query: 205 LADVAAV 211
A + +
Sbjct: 144 RAQMLKI 150
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480 |
| >gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
+L+ + + GP G N ++ + + +D T+ +E+E++ P AKL+ A
Sbjct: 15 EACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMA 70
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMS-K 198
+ + GDGT VVLA L+ + +++ G +P I G EK K + L+++
Sbjct: 71 SQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVY 130
Query: 199 EVEDSELADVAAVSA-----------GNNYEVGNMIAEAMSKV 230
++ED L + VS GN + ++AEA V
Sbjct: 131 KIED--LRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISV 171
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472 |
| >gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 82 VNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141
+A++V +LGP G + +L G I NDG T+ K +E+E P AK++ + A
Sbjct: 17 AMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQ 72
Query: 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ GDGTT+ V++A L+ ++V +P I G
Sbjct: 73 LQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISG 112
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527 |
| >gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 31/127 (24%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD++ TLGP+ +L G + NDG + +E+++ P AK + + + +
Sbjct: 28 VADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHP----AAKSMIELSRTQD 83
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
+ GDGTT+ ++LA +++ + +P +I R +K +S L+++S V+ ++
Sbjct: 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND 143
Query: 205 LADVAAV 211
A + +
Sbjct: 144 DAAMLKL 150
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| PLN03167 | 600 | Chaperonin-60 beta subunit; Provisional | 100.0 | |
| PRK12849 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12852 | 545 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK00013 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| TIGR02348 | 524 | GroEL chaperonin GroL. This family consists of Gro | 100.0 | |
| PRK12850 | 544 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PTZ00114 | 555 | Heat shock protein 60; Provisional | 100.0 | |
| CHL00093 | 529 | groEL chaperonin GroEL | 100.0 | |
| cd03344 | 520 | GroEL GroEL_like type I chaperonin. Chaperonins ar | 100.0 | |
| KOG0356 | 550 | consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ | 100.0 | |
| PRK14104 | 546 | chaperonin GroEL; Provisional | 100.0 | |
| PRK12851 | 541 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| TIGR02339 | 519 | thermosome_arch thermosome, various subunits, arch | 100.0 | |
| cd03343 | 517 | cpn60 cpn60 chaperonin family. Chaperonins are inv | 100.0 | |
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 100.0 | |
| cd03342 | 484 | TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| cd03335 | 527 | TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02347 | 531 | chap_CCT_zeta T-complex protein 1, zeta subunit. M | 100.0 | |
| TIGR02340 | 536 | chap_CCT_alpha T-complex protein 1, alpha subunit. | 100.0 | |
| cd03338 | 515 | TCP1_delta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| cd03339 | 526 | TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha | 100.0 | |
| cd03340 | 522 | TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero | 100.0 | |
| TIGR02343 | 532 | chap_CCT_epsi T-complex protein 1, epsilon subunit | 100.0 | |
| TIGR02344 | 525 | chap_CCT_gamma T-complex protein 1, gamma subunit. | 100.0 | |
| TIGR02342 | 517 | chap_CCT_delta T-complex protein 1, delta subunit. | 100.0 | |
| TIGR02345 | 522 | chap_CCT_eta T-complex protein 1, eta subunit. Mem | 100.0 | |
| cd03336 | 517 | TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| PTZ00212 | 533 | T-complex protein 1 subunit beta; Provisional | 100.0 | |
| TIGR02346 | 531 | chap_CCT_theta T-complex protein 1, theta subunit. | 100.0 | |
| cd03337 | 480 | TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| cd00309 | 464 | chaperonin_type_I_II chaperonin families, type I a | 100.0 | |
| cd03341 | 472 | TCP1_theta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02341 | 519 | chap_CCT_beta T-complex protein 1, beta subunit. M | 100.0 | |
| KOG0361 | 543 | consensus Chaperonin complex component, TCP-1 eta | 100.0 | |
| PF00118 | 485 | Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon | 100.0 | |
| KOG0363 | 527 | consensus Chaperonin complex component, TCP-1 beta | 100.0 | |
| KOG0358 | 534 | consensus Chaperonin complex component, TCP-1 delt | 100.0 | |
| KOG0362 | 537 | consensus Chaperonin complex component, TCP-1 thet | 100.0 | |
| KOG0360 | 545 | consensus Chaperonin complex component, TCP-1 alph | 100.0 | |
| KOG0364 | 527 | consensus Chaperonin complex component, TCP-1 gamm | 100.0 | |
| KOG0359 | 520 | consensus Chaperonin complex component, TCP-1 zeta | 100.0 | |
| KOG0357 | 400 | consensus Chaperonin complex component, TCP-1 epsi | 100.0 | |
| cd03333 | 209 | chaperonin_like chaperonin_like superfamily. Chape | 99.96 | |
| cd03334 | 261 | Fab1_TCP TCP-1 like domain of the eukaryotic phosp | 99.94 | |
| KOG0230 | 1598 | consensus Phosphatidylinositol-4-phosphate 5-kinas | 99.25 | |
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 97.33 |
| >PLN03167 Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-108 Score=906.19 Aligned_cols=525 Identities=91% Similarity=1.231 Sum_probs=498.1
Q ss_pred CcccccccccccccccCCCcccchhcccccccccccccccccccccccccccccccccccccccccccCCcHHHHHHHHH
Q 009575 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKIYAAKDLHFNKDGYAMKKLQN 80 (532)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~f~~~~~~~~~~~~ 80 (532)
|||++.+.++.++..++... ++.+.++|...++..+|+++++.+.|++..++..++|+|.||.+.++|+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ar~~l~~ 73 (600)
T PLN03167 1 MASTFTATSSVGSLAAPNGH-------KSDNRLSSFASISSSSFGRRQSVRLRRSRSPKVKAAKELHFNKDGSAIKKLQA 73 (600)
T ss_pred CcchhhhhhhhcCccccccc-------ccccccccccccccccccccccccccccCCchhhhcceeecCCcHHHHHHHHH
Confidence 88998888888888877544 45577788888888999766665556666665555899999932279999999
Q ss_pred HHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCcccchHHHHHHH
Q 009575 81 GVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 160 (532)
Q Consensus 81 gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGTTt~vvLa~~ 160 (532)
|++.|+++|++||||+||||||++++|+|+|||||+||+|+|+++||++|+||+|++++|++||+++||||||++||+++
T Consensus 74 g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~ 153 (600)
T PLN03167 74 GVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 153 (600)
T ss_pred HHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCchhHHHHHhhhcCChhhHhHHHHHHHHhhccCCceEEec
Q 009575 161 LIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240 (532)
Q Consensus 161 Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~~~~is~li~eA~~~vg~~g~I~v~~ 240 (532)
||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.+|.++|++|+++++.|++|++||+.+++++|.|.+++
T Consensus 154 LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~ 233 (600)
T PLN03167 154 LIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 233 (600)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEecc
Confidence 99999999999999999999999999999999999999997658999999999999999999999999999999999999
Q ss_pred CCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHHhcCCCeEEEcccccHHHH
Q 009575 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEAL 320 (532)
Q Consensus 241 G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~~~g~~lvIia~~I~~~al 320 (532)
|++++|++++++|++|+++|.+|||++++++|+++++||+||++|++|++++++.++++.+.+.|+|+||++++|+++++
T Consensus 234 g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL 313 (600)
T PLN03167 234 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEAL 313 (600)
T ss_pred CCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCCh
Q 009575 321 ATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQ 400 (532)
Q Consensus 321 ~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~g~~~~ 400 (532)
++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++||+|++|++.++.|+++++.+++
T Consensus 314 ~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~ 393 (600)
T PLN03167 314 ATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQ 393 (600)
T ss_pred HHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCccccCchhh
Q 009575 401 DAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480 (532)
Q Consensus 401 ~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~gvVpGGGa~e 480 (532)
+.+++|+.+++.+++++.++|++++|++|+++|++++++|+|||+|+.+++|+||+++||+|++|+|+++|+|||||++|
T Consensus 394 ~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~e 473 (600)
T PLN03167 394 EAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 473 (600)
T ss_pred HHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 481 l~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|+++.+|++++..+++.+|+.++++|++||+.||++||+|||+|+.+++.+|
T Consensus 474 l~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L 525 (600)
T PLN03167 474 LRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 525 (600)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHH
Confidence 9999999999888889999889999999999999999999999999999874
|
|
| >PRK12849 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-101 Score=846.90 Aligned_cols=466 Identities=59% Similarity=0.901 Sum_probs=453.7
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|.|+|| +++++.+++|+..++++|++||||+||||||+++.|+++|||||+||+++|+++||.+|+||+|++++|++
T Consensus 2 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~ 79 (542)
T PRK12849 2 AKIIKFD--EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASK 79 (542)
T ss_pred Cccccch--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHh
Confidence 6899999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+++|+++||+++.+++++|+||..|++||++|++.+++.|+++++|+++. +|.++|+||+++++++++
T Consensus 80 qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~ 159 (542)
T PRK12849 80 TNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGE 159 (542)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
++++|+..++++|.+.+++|++++|++++++|++|+++|.+|+|.++.++|+++++||+|+++|++|++++++.++++++
T Consensus 160 lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i 239 (542)
T PRK12849 160 LIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKV 239 (542)
T ss_pred HHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHH
Confidence 99999999999898889999999987699999999999999999999889999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+||||++++|+++|+++|+.|+++|.++|+|||.|+|+++++++|+|||.+|||++++++.+.+++++++++||+|
T Consensus 240 ~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~ 319 (542)
T PRK12849 240 AQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRA 319 (542)
T ss_pred HHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 382 ~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
+.|++++++++++.++++++.+..|++++++++++++++|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 320 ~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl 399 (542)
T PRK12849 320 KRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDAL 399 (542)
T ss_pred eEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++++++++|+|||||++|++++.+|.+++ +.++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 400 ~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L 468 (542)
T PRK12849 400 NATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQA-AGVEIVRRALEAPLRQIAENAGLDGSVVVAKV 468 (542)
T ss_pred HHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999999999999999999999988 7777776 89999999999999999999999999998764
|
|
| >PRK12852 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-101 Score=848.85 Aligned_cols=466 Identities=55% Similarity=0.861 Sum_probs=451.7
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|+|.|| +++|+.+++|++.|+++|++||||+||||||+++.|+++|||||+|||++|+++||++|+||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~ 80 (545)
T PRK12852 3 AKDVKFS--GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (545)
T ss_pred cchhhcc--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhh
Confidence 7999999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+++||++||+++.+++++|+||..|++||++|++.+++.|+++++|+++. ++.+||++|+++++.+++
T Consensus 81 q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~ 160 (545)
T PRK12852 81 TNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGK 160 (545)
T ss_pred cCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
|+++|+.+++++|.|.++.|++..+.+++++|++|+++|.+|||++++++|+++++||+|+++|++|+++++++++|+.+
T Consensus 161 li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i 240 (545)
T PRK12852 161 MIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAV 240 (545)
T ss_pred HHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHH
Confidence 99999999999999999999988555599999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+||||++++|+++|+++|+.|+++|.++|+||++|+||+.++++|+|||++|||++++++.|++++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~ 320 (545)
T PRK12852 241 VQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRA 320 (545)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 382 ~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
+.|++.++++++++++++++.++.|+++++.+++++.+.|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl 400 (545)
T PRK12852 321 KKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDAL 400 (545)
T ss_pred cEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++++++++|+|||||++|++++++|.+++.. ++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 401 ~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~q-~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l 469 (545)
T PRK12852 401 NATRAAVQEGIVPGGGVALLRAKKAVGRINND-NADVQ-AGINIVLKALEAPIRQIAENAGVEGSIVVGKI 469 (545)
T ss_pred HHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999998766 56655 89999999999999999999999999998764
|
|
| >PRK00013 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-101 Score=843.33 Aligned_cols=466 Identities=63% Similarity=0.916 Sum_probs=449.2
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|+|.|| .+++..+++|+..++++|++||||+||||||+++.|+++|||||+||||+|+++||++|+||+|++++|++
T Consensus 2 ~~~~~~~--~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~ 79 (542)
T PRK00013 2 AKDIKFG--EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASK 79 (542)
T ss_pred Cchhhch--HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHh
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|++|+++++.+++
T Consensus 80 qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~ 159 (542)
T PRK00013 80 TNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGK 159 (542)
T ss_pred cCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
++++|+..++++|.|.++.+....+.+++++|++|+++|.+|||.+++++|+++++||+||++|++|++++++.++++++
T Consensus 160 lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i 239 (542)
T PRK00013 160 LIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQV 239 (542)
T ss_pred HHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHH
Confidence 99999999998888888665544444499999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+||||++++|+++++++|+.|+++|+++|+|||.|+||+.++++|+|||.+||+++++++.|++++++++++||+|
T Consensus 240 ~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~ 319 (542)
T PRK00013 240 AQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQA 319 (542)
T ss_pred HHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 382 ~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
+.|+++++++++|+++++++.+..|+++|+.++++++++|++|+|+||+++|+|+++||+|||+|+.+++|++|+++||+
T Consensus 320 ~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal 399 (542)
T PRK00013 320 KKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDAL 399 (542)
T ss_pred eEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++++++++|+|||||++|++++.+|+++ .+.++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 400 ~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l 468 (542)
T PRK00013 400 HATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEA-TGINIVLRALEAPLRQIAENAGLEGSVVVEKV 468 (542)
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999988 66777766 89999999999999999999999999998764
|
|
| >TIGR02348 GroEL chaperonin GroL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-101 Score=840.84 Aligned_cols=465 Identities=62% Similarity=0.910 Sum_probs=451.1
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhcc
Q 009575 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (532)
Q Consensus 64 k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~ 143 (532)
|++.|| ++++..+++|+..++++|++||||+||||||+++.|+++|||||+||+|+|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~--~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 79 (524)
T TIGR02348 2 KQIKFD--EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKT 79 (524)
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHcc
Confidence 789999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhHH
Q 009575 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNM 222 (532)
Q Consensus 144 d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~l 222 (532)
|+++||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. ++.++|++|++++++++++
T Consensus 80 d~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 159 (524)
T TIGR02348 80 NDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSL 159 (524)
T ss_pred CceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHH
Q 009575 223 IAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302 (532)
Q Consensus 223 i~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~ 302 (532)
+++|+..++++|.|.++.|+..+|.+++++|++|+++|.+|+|.+++++++++++||+||++|++|++++++.++++.+.
T Consensus 160 v~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~ 239 (524)
T TIGR02348 160 IAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVA 239 (524)
T ss_pred HHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHH
Confidence 99999999999989998899887766999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceee
Q 009575 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNAS 382 (532)
Q Consensus 303 ~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~ 382 (532)
+.|+||||++++|+++|+++|+.|+++|+++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++||+|+
T Consensus 240 ~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 319 (524)
T TIGR02348 240 QSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAK 319 (524)
T ss_pred HhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred EEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Q 009575 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALN 462 (532)
Q Consensus 383 ~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~ 462 (532)
.|++.++++++++++++++.+..|+++++.++++++++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+|
T Consensus 320 ~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~ 399 (524)
T TIGR02348 320 KVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALN 399 (524)
T ss_pred EEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 463 ATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 463 a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++|+++++|||||||++||+++.+|++ ..+.++.+| +++++|++||+.||++||+|||+|+.+++++|
T Consensus 400 ~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l 467 (524)
T TIGR02348 400 ATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEA-IGIDIVKRALEAPLRQIAENAGKDGAVVAEKV 467 (524)
T ss_pred HHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999998 666677666 89999999999999999999999999998764
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118. |
| >PRK12850 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-101 Score=843.25 Aligned_cols=467 Identities=57% Similarity=0.872 Sum_probs=450.8
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009575 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (532)
Q Consensus 62 ~~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~ 141 (532)
++|+|+|+ +++++.+++|++.|+++|++||||+||||||+++.|+++|||||+|||++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~ 79 (544)
T PRK12850 2 AAKEIRFS--TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVAS 79 (544)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHh
Confidence 37999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHh
Q 009575 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (532)
Q Consensus 142 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is 220 (532)
+||+++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|+++. +|.++|++|+++++.++
T Consensus 80 ~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (544)
T PRK12850 80 KTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIG 159 (544)
T ss_pred hhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHH
Q 009575 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (532)
Q Consensus 221 ~li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~ 300 (532)
++++||+..++++|.|.++.+....+++++++|++|+++|.+|+|+++.++++.+++||+||++|++|++.+++.+++++
T Consensus 160 ~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~ 239 (544)
T PRK12850 160 EMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239 (544)
T ss_pred HHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHH
Confidence 99999999999988888877666666679999999999999999999988999999999999999999999999999999
Q ss_pred HHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCce
Q 009575 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (532)
Q Consensus 301 i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~ 380 (532)
+.+.|+||||++++|+++++++|+.|+++|.++++|||+|+||+.++++|+|||++|||++++++.|++++++++++||+
T Consensus 240 i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 319 (544)
T PRK12850 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR 319 (544)
T ss_pred HHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009575 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (532)
Q Consensus 381 ~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DA 460 (532)
|++|++.++++++++++++++.+..|+++++++++++.+.|++++|+||++||+|+++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (544)
T PRK12850 320 AKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDA 399 (544)
T ss_pred CcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 461 l~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++++++++++|||||||++|++++..|+++ ...++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 400 l~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l 469 (544)
T PRK12850 400 LHATRAAVEEGIVPGGGVALLRARSALRGL-KGANADET-AGIDIVRRALEEPLRQIATNAGFEGSVVVGKV 469 (544)
T ss_pred HHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999999999988 56666666 89999999999999999999999999998764
|
|
| >PTZ00114 Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-101 Score=844.45 Aligned_cols=467 Identities=53% Similarity=0.848 Sum_probs=452.1
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
++++.|+ ++++..+++|+..|+++|++||||+||||||++++|+|+|||||+||+|+|+++||.+|+||+|++++|++
T Consensus 14 ~~~~~~~--~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~ 91 (555)
T PTZ00114 14 GKEIRFG--DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASK 91 (555)
T ss_pred hhhhhhH--HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHh
Confidence 6788898 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+||||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. +|.++|+||+++++.+++
T Consensus 92 qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~ 171 (555)
T PTZ00114 92 TNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGS 171 (555)
T ss_pred hccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999866 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
+++||+.+++++|.|.+++|++++|++++++|++|+++|.+|+|++++++|+++++||+||++|++|++++++.++++++
T Consensus 172 li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i 251 (555)
T PTZ00114 172 LIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHA 251 (555)
T ss_pred HHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecC-CCccccCCCCCCCce
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDE-VGLALDKVGKEVLGN 380 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~-~~~~l~~~~~~~lG~ 380 (532)
.+.|+||||++++|+++|+++|..|+++|.++|+|||.|++|++++++|+|||++|||+++++. .+..++++++++||+
T Consensus 252 ~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~ 331 (555)
T PTZ00114 252 VKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGS 331 (555)
T ss_pred HHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986 777788999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009575 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (532)
Q Consensus 381 ~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DA 460 (532)
|++|+++++++++++++++++.|+.|+++++.++++..++|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 332 a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Da 411 (555)
T PTZ00114 332 AKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDA 411 (555)
T ss_pred CceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccccCchhhhHHHHHHHHHhc--cCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE--TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 461 l~a~~~al~~gvVpGGGa~el~ls~~L~~~~~--~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+|++++++++|||||||++|++++.+|++++. ..++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 412 l~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l 484 (555)
T PTZ00114 412 LNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQR-TGVKIVRNALRLPTKQIAENAGVEGAVVVEKI 484 (555)
T ss_pred HHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999998875 4666666 89999999999999999999999999998764
|
|
| >CHL00093 groEL chaperonin GroEL | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-101 Score=839.83 Aligned_cols=466 Identities=57% Similarity=0.887 Sum_probs=448.5
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|+|.|+ +++|+.+++|++.++++|++||||+||||||+++.|+++|||||+||||+|+++||++++|++|++++|.+
T Consensus 2 ~~~~~~~--~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~ 79 (529)
T CHL00093 2 SKKILYQ--DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASK 79 (529)
T ss_pred CceeecC--HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHh
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
|++++||||||++||+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. +|.+||++|+++++.|++
T Consensus 80 ~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~ 159 (529)
T CHL00093 80 TNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGS 159 (529)
T ss_pred cCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCH-HHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA-RDLINVLED 300 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~-~el~~~le~ 300 (532)
|++||+.+++++|.|.++.|+..++.+++++|++|+++|.+|||++++++|+++++||+|+++|++|+.. .+++++++.
T Consensus 160 lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~ 239 (529)
T CHL00093 160 MIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQ 239 (529)
T ss_pred HHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHH
Confidence 9999999999999898877776666679999999999999999999999999999999999999999987 789999999
Q ss_pred HHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCce
Q 009575 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (532)
Q Consensus 301 i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~ 380 (532)
+.+.|.|+||++++|+++++++|+.|+.+|+++|+||+.|++|++++++|+|||++|||++++++.|++++++++++||+
T Consensus 240 i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~ 319 (529)
T CHL00093 240 VTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQ 319 (529)
T ss_pred HHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009575 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (532)
Q Consensus 381 ~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DA 460 (532)
|++|++.+++++++. .++++.+..||++++++++.++++||+++|+||+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DA 398 (529)
T CHL00093 320 ARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDA 398 (529)
T ss_pred ceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHH
Confidence 999999999999998 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccccCchhhhHHHHHHHHHhc-cCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE-TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 461 l~a~~~al~~gvVpGGGa~el~ls~~L~~~~~-~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+|++++++++|+|||||++||++|++|++++. +.++.+| +++++|++||+.||++||+|||+|+.+++.++
T Consensus 399 l~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l 470 (529)
T CHL00093 399 INATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDEL-IGALIVARAILAPLKRIAENAGKNGSVIIEKV 470 (529)
T ss_pred HHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999876 6777766 89999999999999999999999999998764
|
|
| >cd03344 GroEL GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-100 Score=833.66 Aligned_cols=465 Identities=63% Similarity=0.933 Sum_probs=451.8
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhcc
Q 009575 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (532)
Q Consensus 64 k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~ 143 (532)
|+|.|| .+++..+++|+..|+++|++||||+||+|||++++|+++|||||+||+|+|+++||.+|+||+|++++|++|
T Consensus 1 ~~~~~g--~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~q 78 (520)
T cd03344 1 KDIKFG--EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 78 (520)
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhh
Confidence 578899 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhHH
Q 009575 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNM 222 (532)
Q Consensus 144 d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~l 222 (532)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||++++++++++
T Consensus 79 d~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~l 158 (520)
T cd03344 79 NDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGEL 158 (520)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHH
Q 009575 223 IAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302 (532)
Q Consensus 223 i~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~ 302 (532)
+++|+..++++|.|.+++|++++|++++++|++|+++|.+|+|.+++++|+++++||+|+++|++|++++++.++++++.
T Consensus 159 v~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~ 238 (520)
T cd03344 159 IAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238 (520)
T ss_pred HHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999998989989999999976999999999999999999998889999999999999999999999999999999
Q ss_pred hcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceee
Q 009575 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNAS 382 (532)
Q Consensus 303 ~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~ 382 (532)
+.|+||||++++|+++++++|..|+++|.++|+|||.|++|++++++|+|||.+|||++++.+++.+++++++++||+|+
T Consensus 239 ~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~ 318 (520)
T cd03344 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAK 318 (520)
T ss_pred hhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Q 009575 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALN 462 (532)
Q Consensus 383 ~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~ 462 (532)
.|++++++++++.++++++.++.|+++++++++++.++|++++|+||+++|+|+.|||+|||+|+.+++|++|+++||+|
T Consensus 319 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~ 398 (520)
T cd03344 319 KVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALN 398 (520)
T ss_pred EEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 463 ATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 463 a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++++++++|+|||||++||+++++|.+++. .++.+| +++++|++||+.||++||+|||+|+.+++++|
T Consensus 399 ~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l 466 (520)
T cd03344 399 ATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGDEK-LGIEIVRRALEAPLRQIAENAGVDGSVVVEKV 466 (520)
T ss_pred HHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999999999987 767766 89999999999999999999999999998864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. |
| >KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-101 Score=806.91 Aligned_cols=473 Identities=56% Similarity=0.840 Sum_probs=462.3
Q ss_pred ccccccccccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHH
Q 009575 55 ARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAK 134 (532)
Q Consensus 55 ~~~~~~~~~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gak 134 (532)
.+.+| | +|+|+|| .++|+.+++|++.|+|+|.+||||+|||++|.+.+|+|+|||||+|++++++|+|+.+|+||+
T Consensus 10 ~~~~r-~-ak~i~fg--~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gak 85 (550)
T KOG0356|consen 10 TKCVR-Y-AKDIKFG--KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAK 85 (550)
T ss_pred ccccc-c-ccccccC--HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccH
Confidence 33355 6 8999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhc
Q 009575 135 LVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSA 213 (532)
Q Consensus 135 Ll~e~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~ 213 (532)
|+++++.++|+.+||||||+++|++++..++.+-+.+|.+|++|++|+.++++.++++|+++++||+.. ++.+||++|+
T Consensus 86 lvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSA 165 (550)
T KOG0356|consen 86 LVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISA 165 (550)
T ss_pred HHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 9999999999
Q ss_pred CChhhHhHHHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHH
Q 009575 214 GNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD 293 (532)
Q Consensus 214 ~~~~~is~li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~e 293 (532)
|+|.++++|+.+|+.++|++|+|+++.|.+++|++++++||.||+||+||||++++++++++|++|++|+++++|+++++
T Consensus 166 ngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ 245 (550)
T KOG0356|consen 166 NGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQS 245 (550)
T ss_pred CCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCC-ccccC
Q 009575 294 LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG-LALDK 372 (532)
Q Consensus 294 l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~-~~l~~ 372 (532)
+.|.+|...+...||+|+++||+.++|.+|+.|++++.++|+|||+|+|||.++..+.||+.+||++++.++.+ +++++
T Consensus 246 ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~ 325 (550)
T KOG0356|consen 246 IVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLED 325 (550)
T ss_pred HhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988 88999
Q ss_pred CCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHH
Q 009575 373 VGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKE 452 (532)
Q Consensus 373 ~~~~~lG~~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E 452 (532)
+++++||.|.++.+++++++++.+.++++++++||+||+..++.+.++||+++++||+++|++++++|.+||+||.|++|
T Consensus 326 ~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~e 405 (550)
T KOG0356|consen 326 AKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNE 405 (550)
T ss_pred CchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 453 KKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 453 ~k~~i~DAl~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++++++|||||+++|+++|+|||||+++++|+..|+++.. .++.+++.|++++.+||..|.++|++|||.|+..+++|+
T Consensus 406 kk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv 484 (550)
T KOG0356|consen 406 KKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKV 484 (550)
T ss_pred hhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHH
Confidence 9999999999999999999999999999999999999876 677888899999999999999999999999999999875
|
|
| >PRK14104 chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-100 Score=836.34 Aligned_cols=466 Identities=53% Similarity=0.847 Sum_probs=450.2
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|++.|| .++|+.+++|+..++++|++||||+||||||+++.|+|+|||||+||+|+|++++|++|+||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~ 80 (546)
T PRK14104 3 AKEVKFG--VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (546)
T ss_pred cceecch--HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHh
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+||||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. ++.+||++|+++++.+++
T Consensus 81 qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~ 160 (546)
T PRK14104 81 SADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGK 160 (546)
T ss_pred hcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
+++||+.+++++|.|.++.+++++|++++++|++|+++|.+|||+++++.++.++++|+||++|.+|+++++++++++.+
T Consensus 161 lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i 240 (546)
T PRK14104 161 FLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240 (546)
T ss_pred HHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHH
Confidence 99999999999999999888888766699999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+||||++++|+++|+++|..|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a 320 (546)
T PRK14104 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRA 320 (546)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 382 ~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
+++++++++++++++|++++.+++|+++|+.++++++++|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal 400 (546)
T PRK14104 321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAM 400 (546)
T ss_pred eEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++++++++|+|||||++|++++..|+++.. ..+. +++++++|++||+.||++||+|||+|+.+++.+|
T Consensus 401 ~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~-~~~~-~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l 469 (546)
T PRK14104 401 HATRAAVEEGIVPGGGVALLRASEQLKGIKT-KNDD-QKTGVEIVRKALSAPARQIAINAGEDGSVIVGKI 469 (546)
T ss_pred HHHHHHHHcCcCcCchHHHHHHHHHHHHhhc-CChH-HHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999998743 4444 4599999999999999999999999999998764
|
|
| >PRK12851 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-100 Score=835.47 Aligned_cols=466 Identities=58% Similarity=0.881 Sum_probs=448.4
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|.+.|+ +++++.+++|++.++++|++||||+||||||+++.|+++|||||+|||++|+++||++|+||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~ 80 (541)
T PRK12851 3 AKEVKFH--VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASK 80 (541)
T ss_pred cceeccc--HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHh
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+|+|+++||+++.+++++|+||..|++||++|++.++++|+++++|+++. ++.++|++|+++++.|++
T Consensus 81 qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~ 160 (541)
T PRK12851 81 TNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGR 160 (541)
T ss_pred hhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999866 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
+++||+..++++|.|.++.+....+++++++|++|+++|.+|+|++++++|+++++||+||++|++|++.+++.++++.+
T Consensus 161 lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i 240 (541)
T PRK12851 161 LVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAV 240 (541)
T ss_pred HHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHH
Confidence 99999999999888887665444445599999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||+.++++|+|||.+|||++++++.+++++++++++||+|
T Consensus 241 ~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~ 320 (541)
T PRK12851 241 VQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRA 320 (541)
T ss_pred HHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 382 ~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
+.|++.+++|+++++++++++++.|+++++++++++.++|++++|++|+++|+|+++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl 400 (541)
T PRK12851 321 KKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDAL 400 (541)
T ss_pred cEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+++++++++|||||||++|++++.+|++++.. ++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 401 ~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l 469 (541)
T PRK12851 401 HATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGDQR-TGVEIVRRALEAPVRQIAENAGAEGSVVVGKL 469 (541)
T ss_pred HHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999998765 56665 89999999999999999999999999998764
|
|
| >TIGR02339 thermosome_arch thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-80 Score=681.67 Aligned_cols=402 Identities=25% Similarity=0.399 Sum_probs=367.8
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccc
Q 009575 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (532)
Q Consensus 65 ~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d 144 (532)
+..+| .+++..|+.||..+++++++||||+||||||+++.|+++|||||+||+|+|+++||+ |+|++++|++||
T Consensus 10 ~~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd 83 (519)
T TIGR02339 10 QRTKG--RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 83 (519)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHH
Confidence 34455 789999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc--h-hHHHHHhhhcCCh-----
Q 009575 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAGNN----- 216 (532)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~~~----- 216 (532)
+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++. . .|.++|+|+++++
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~ 163 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEV 163 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccch
Confidence 9999999999999999999999999999999999999999999999999999999875 3 7999999998754
Q ss_pred --hhHhHHHHHHHHhhcc---CCc-------eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009575 217 --YEVGNMIAEAMSKVGR---KGV-------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (532)
Q Consensus 217 --~~is~li~eA~~~vg~---~g~-------I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIl 282 (532)
+.|++|+++|+.++++ +|. |.+ .+|++++|| ++++|++|+++|.+| +|+.+++||+|+
T Consensus 164 ~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~-------~m~~~i~n~kIl 235 (519)
T TIGR02339 164 TKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP-------GMPKRVKNAKIA 235 (519)
T ss_pred hHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC-------CCccccCCCcEE
Confidence 8899999999999985 563 334 799999999 899999999999987 378889999999
Q ss_pred eeccc-------------CCCHHHHHHHHH-----------HHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEee
Q 009575 283 LVDKK-------------ITNARDLINVLE-----------DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (532)
Q Consensus 283 l~d~~-------------I~~~~el~~~le-----------~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk 338 (532)
+++++ |++++++.++++ .+++.|+||||++++|+++++++|.++ +|++|+
T Consensus 236 ll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~ 309 (519)
T TIGR02339 236 LLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVR 309 (519)
T ss_pred EEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEe
Confidence 99998 677777766655 899999999999999999999999765 345565
Q ss_pred CCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009575 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (532)
Q Consensus 339 ~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~ 415 (532)
++++++|+|||++|||++++ ++++++++.||+|++|++. ++++++|++|+++
T Consensus 310 -----~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~--------------- 364 (519)
T TIGR02339 310 -----RVKKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP--------------- 364 (519)
T ss_pred -----cCCHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC---------------
Confidence 66799999999999999999 4888888999999999875 4889999988653
Q ss_pred hhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccC
Q 009575 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (532)
Q Consensus 416 ~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (532)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++||+|+.+|++++.+.
T Consensus 365 --------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~ 424 (519)
T TIGR02339 365 --------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKI 424 (519)
T ss_pred --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcC
Confidence 489999999999999999999999999999999999 99999999999999999998778
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++.++ +++++|++||+.||++|++|||+|+.+++.+|
T Consensus 425 ~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l 461 (519)
T TIGR02339 425 GGREQ-LAIEAFADALEEIPRILAENAGLDPIDALVEL 461 (519)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 78776 89999999999999999999999999998764
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs. |
| >cd03343 cpn60 cpn60 chaperonin family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-80 Score=681.19 Aligned_cols=402 Identities=25% Similarity=0.385 Sum_probs=368.8
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccc
Q 009575 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (532)
Q Consensus 65 ~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d 144 (532)
+..+| .++++.|+.|+..|+++|++||||+||||||+++.|+++|||||+||+++|+++||. |+|++++|++||
T Consensus 9 ~~~~~--~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~ 82 (517)
T cd03343 9 QRTSG--RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 82 (517)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHH
Confidence 35566 789999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--ch-hHHHHHhhhcCCh-----
Q 009575 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGNN----- 216 (532)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~~----- 216 (532)
+++||||||+++|+++|++++.+++++|+||..|++||++|.+.+++.|++++++++ +. .|.+||++|++++
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~ 162 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAA 162 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhH
Confidence 999999999999999999999999999999999999999999999999999999996 44 8999999999864
Q ss_pred -hhHhHHHHHHHHhhccCCc---------eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009575 217 -YEVGNMIAEAMSKVGRKGV---------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (532)
Q Consensus 217 -~~is~li~eA~~~vg~~g~---------I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~ 284 (532)
+.|++|+++|+.++++++. |.+ ++|++++|| ++++|++|+++|.+|+ |++.++||+|+++
T Consensus 163 ~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~-------m~~~~~n~~Illl 234 (517)
T cd03343 163 KDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPG-------MPKRVENAKIALL 234 (517)
T ss_pred HHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCC-------CccccCCCcEEEE
Confidence 8999999999999987642 666 799999999 8999999999999997 4567899999999
Q ss_pred ccc-------------CCCHHHHHHH-----------HHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCC
Q 009575 285 DKK-------------ITNARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (532)
Q Consensus 285 d~~-------------I~~~~el~~~-----------le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~ 340 (532)
+++ +++++++.++ ++.+.+.|+||||++++|+++++++|.++ +|++|+
T Consensus 235 ~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~-- 306 (517)
T cd03343 235 DAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVR-- 306 (517)
T ss_pred eccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEE--
Confidence 998 4777776554 55899999999999999999999999865 446676
Q ss_pred CCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009575 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (532)
Q Consensus 341 ~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~ 417 (532)
++++++|+|||++|||++++ +++++++++||+|++|++. +++|+++++|+++
T Consensus 307 ---~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~----------------- 361 (517)
T cd03343 307 ---RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP----------------- 361 (517)
T ss_pred ---eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-----------------
Confidence 66799999999999999998 5888999999999999864 7889999988763
Q ss_pred hhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCC
Q 009575 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDN 496 (532)
Q Consensus 418 ~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~ 496 (532)
..+||+|||+|+.+++|++|+++||++++++++++| +|||||++||+++.+|++++.+.++
T Consensus 362 ------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~ 423 (517)
T cd03343 362 ------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGG 423 (517)
T ss_pred ------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999999999 9999999999999999998877778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 497 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 497 ~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
.+| +++++|++||+.||++|++|||+|+.+++.++
T Consensus 424 ~~~-~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l 458 (517)
T cd03343 424 REQ-LAVEAFADALEEIPRTLAENAGLDPIDTLVEL 458 (517)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 776 89999999999999999999999999998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-82 Score=688.39 Aligned_cols=440 Identities=46% Similarity=0.666 Sum_probs=396.9
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+++..|+ .++|..|+.|++.|+++|++||||+||||||+++.|+|.|||||+||||+|+++||. |||++++|.+
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~~ 76 (524)
T COG0459 3 GKERKFG--EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAKK 76 (524)
T ss_pred ccccccc--HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHHH
Confidence 6889999 999999999999999999999999999999999977999999999999999999998 9999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch--h----HHHHHhhhcCCh
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS--E----LADVAAVSAGNN 216 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~--~----l~~va~ts~~~~ 216 (532)
||+++||||||+|||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++. + ..++++.+++++
T Consensus 77 qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~ 156 (524)
T COG0459 77 QDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSD 156 (524)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccCh
Confidence 9999999999999999999999999999999999999999999999999999999999865 2 223333345567
Q ss_pred hhHhHHHHHHHHhhcc-----CCceEEe-cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCC
Q 009575 217 YEVGNMIAEAMSKVGR-----KGVVTLE-EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITN 290 (532)
Q Consensus 217 ~~is~li~eA~~~vg~-----~g~I~v~-~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~ 290 (532)
++|++|+++|+.+++. ++++.++ .|++.+|+ ++++||+|++||.+|||.++ +.++||+||++|++|+.
T Consensus 157 ~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~ 230 (524)
T COG0459 157 EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEI 230 (524)
T ss_pred HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCCCCc-----cccccceEEEEcccccc
Confidence 9999999999999999 7877764 55666666 99999999999999997543 67899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccc
Q 009575 291 ARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLAL 370 (532)
Q Consensus 291 ~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l 370 (532)
.++.++ ++..++.+.|+++++++++++++..++.|.+++.+++++|+.|+|+|.++++|+|++++|++++.+++++
T Consensus 231 ~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~--- 306 (524)
T COG0459 231 KKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG--- 306 (524)
T ss_pred ccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH---
Confidence 999988 8888888889999999999999999999999999999999999999999999999999999999998764
Q ss_pred cCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHH
Q 009575 371 DKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENA-EQDYEREKLNERIAKLSGGVAVIQVGAQTETE 449 (532)
Q Consensus 371 ~~~~~~~lG~~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~-~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~ 449 (532)
.....+|.|+.|.+.++.+....|.+. +.++++. .++|+++++++|.++ .+++|||+|||+|+.+
T Consensus 307 --~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ 372 (524)
T COG0459 307 --ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATEVE 372 (524)
T ss_pred --HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccHhH
Confidence 156678899999988877776665420 2344454 788999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 009575 450 LKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528 (532)
Q Consensus 450 l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~v 528 (532)
++|++|+++|||+++++++++| +|||||++|+++++.|++++.+.++.++++++++|++||+.||++||+|||+||.++
T Consensus 373 ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v 452 (524)
T COG0459 373 LDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEV 452 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999 999999999999999999854444434559999999999999999999999999999
Q ss_pred hccC
Q 009575 529 SEKV 532 (532)
Q Consensus 529 i~kl 532 (532)
+.+|
T Consensus 453 ~~~L 456 (524)
T COG0459 453 LSKL 456 (524)
T ss_pred HHHH
Confidence 9874
|
|
| >cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-81 Score=677.23 Aligned_cols=392 Identities=24% Similarity=0.387 Sum_probs=358.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.++..|+++|++||||+||||||++++|+++|||||+|||++|+++||+ ++|+.++|++||+++||||
T Consensus 11 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~~~GDGT 86 (484)
T cd03342 11 GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDDITGDGT 86 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhhHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC---ch-hHHHHHhhhcCCh------hhHhH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE---DS-ELADVAAVSAGNN------YEVGN 221 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~---~~-~l~~va~ts~~~~------~~is~ 221 (532)
||++||+++||+++.+++++|+||..|++||++|.+.+++.|++++++++ +. .+.+||++|++++ +.|++
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~ 166 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTE 166 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 44 8999999999864 89999
Q ss_pred HHHHHHHhhccCC-c-------eEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHH
Q 009575 222 MIAEAMSKVGRKG-V-------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD 293 (532)
Q Consensus 222 li~eA~~~vg~~g-~-------I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~e 293 (532)
++++|+..+++++ . |...+|++++|+ ++++|++|+++|.+|+ |+++++||+|+++|++|+.++.
T Consensus 167 l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~-------m~~~~~n~~Ill~~~~le~~~~ 238 (484)
T cd03342 167 IVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPD-------MPKRVENAYILTCNVSLEYEKT 238 (484)
T ss_pred HHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCC-------CCccccCceEEEEeCCCCCCcc
Confidence 9999999999875 1 223589999999 8999999999999997 4677899999999999987654
Q ss_pred HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCC
Q 009575 294 LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKV 373 (532)
Q Consensus 294 l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~ 373 (532)
-.+ ...-.+|||++++|+++++++|.+| +|+||+ ++++++|+|||++|||++++ +++++
T Consensus 239 ~~~-----~~~~~~lvi~~~~I~~~al~~l~~~------~I~av~-----~~~~~~l~~ia~~tGa~ii~-----~l~~~ 297 (484)
T cd03342 239 EVN-----SGFFYSVVINQKGIDPPSLDMLAKE------GILALR-----RAKRRNMERLTLACGGVAMN-----SVDDL 297 (484)
T ss_pred ccC-----cEEEEEEEEeCCCccHHHHHHHHHC------CCeEEE-----eCCHHHHHHHHHHhCCEEec-----ccccC
Confidence 211 0112469999999999999999988 468888 45689999999999999999 58899
Q ss_pred CCCCCceeeEE---EEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHH
Q 009575 374 GKEVLGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETEL 450 (532)
Q Consensus 374 ~~~~lG~~~~v---~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l 450 (532)
++++||+|++| ++++++++++++++++ +.+||+|||+|+.++
T Consensus 298 ~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~tI~lrg~t~~~l 342 (484)
T cd03342 298 SPECLGYAGLVYERTLGEEKYTFIEGVKNP-----------------------------------KSCTILIKGPNDHTI 342 (484)
T ss_pred ChhhCcccceEEEEEECCeEEEEEECCCCC-----------------------------------cEEEEEEeCCCHHHH
Confidence 99999999999 5678899999988763 589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh
Q 009575 451 KEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVS 529 (532)
Q Consensus 451 ~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi 529 (532)
+|.+|+++||++++++++++| +||||||+||+|+.+|++++...++.+| +++++|++||+.||++||+|||+|+.+++
T Consensus 343 ~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~~l 421 (484)
T cd03342 343 TQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK-LGVQAFADALLVIPKTLAENSGLDVQETL 421 (484)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999 9999999999999999999877778776 89999999999999999999999999998
Q ss_pred ccC
Q 009575 530 EKV 532 (532)
Q Consensus 530 ~kl 532 (532)
.+|
T Consensus 422 ~~l 424 (484)
T cd03342 422 VKL 424 (484)
T ss_pred HHH
Confidence 764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-80 Score=677.30 Aligned_cols=402 Identities=26% Similarity=0.348 Sum_probs=363.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|++||..|+++|++||||+||||||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 7 QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEVGDGT 82 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh-cccccC--ch-hHHHHHhhhcC------ChhhHhH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE--DS-ELADVAAVSAG------NNYEVGN 221 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~-~s~~v~--~~-~l~~va~ts~~------~~~~is~ 221 (532)
||++||+++||+++.+++++|+||..|++||+.|.+.+++.|++ +++|++ +. .|.++|+|+++ +.+.|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 899987 44 89999999987 3489999
Q ss_pred HHHHHHHhhcc---CCc-------e--EEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC
Q 009575 222 MIAEAMSKVGR---KGV-------V--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (532)
Q Consensus 222 li~eA~~~vg~---~g~-------I--~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~ 289 (532)
++++|+..++. +|. | ...+|++++|+ ++++|++|+++|.+| +|+++++||+|++++++|+
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le 234 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQ 234 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEeccCC
Confidence 99999999952 232 2 24689999999 899999999999987 4788899999999999875
Q ss_pred C-------------HHH-----------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCcc
Q 009575 290 N-------------ARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (532)
Q Consensus 290 ~-------------~~e-----------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~ 345 (532)
. +.+ +.++++.+.+.|+||||++++|+++++++|.++ +|++++ ++
T Consensus 235 ~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v 303 (527)
T cd03335 235 KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RV 303 (527)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eC
Confidence 4 222 346788888999999999999999999999987 456666 67
Q ss_pred chhhHHHHHHHhCCeEeecCCCc-cccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009575 346 KSQYLDDIAILTGGTVIRDEVGL-ALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (532)
Q Consensus 346 ~k~~L~~ia~~tG~~ii~~~~~~-~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~ 421 (532)
++++|+|||++|||+++++..++ ..+++++++||+|++|+ ++++++++|.++++
T Consensus 304 ~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~---------------------- 361 (527)
T cd03335 304 KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK---------------------- 361 (527)
T ss_pred CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC----------------------
Confidence 79999999999999999975443 22456677999999999 67889999998865
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHH
Q 009575 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (532)
Q Consensus 422 e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (532)
+++|||+|||+|+.+++|.+|+++||++++++++++| +|||||++||+|+.+|+++++..++.+|
T Consensus 362 -------------~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~- 427 (527)
T cd03335 362 -------------RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 427 (527)
T ss_pred -------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH-
Confidence 3699999999999999999999999999999999999 9999999999999999999887877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 501 ~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+++++|++||+.||++||+|||+|+.+++.+|
T Consensus 428 ~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l 459 (527)
T cd03335 428 LAIAEFAEALLVIPKTLAVNAAKDATELVAKL 459 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 89999999999999999999999999998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=673.23 Aligned_cols=397 Identities=23% Similarity=0.378 Sum_probs=360.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.+|..|+++|+|||||+||||||+++.|+++|||||+||+++|+++||+ ++|+.++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~~~GDGT 90 (531)
T TIGR02347 15 DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDDITGDGT 90 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCcH
Confidence 779999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhccccc---Cch-hHHHHHhhhcCC------hhhHhH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV---EDS-ELADVAAVSAGN------NYEVGN 221 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v---~~~-~l~~va~ts~~~------~~~is~ 221 (532)
||++||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++++ .+. .|.++|+|++++ +++|++
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 170 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTE 170 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999765 344 899999999864 889999
Q ss_pred HHHHHHHhhccCCc------eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCH--
Q 009575 222 MIAEAMSKVGRKGV------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA-- 291 (532)
Q Consensus 222 li~eA~~~vg~~g~------I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~-- 291 (532)
++++|+..++++|. |.+ .+|++.+|+ ++++|++|+++|.+|+ |+++++||+|+++|++|+..
T Consensus 171 iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~le~~~~ 242 (531)
T TIGR02347 171 IVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVSLEYEKT 242 (531)
T ss_pred HHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCCCCCCcc
Confidence 99999999988753 333 578999999 8999999999999997 46688999999999987433
Q ss_pred -----------HH-----------HHHHHHHHHhcCC-------C---eEEEcccccHHHHHHHHHhhhcccceEEEeeC
Q 009575 292 -----------RD-----------LINVLEDAIRGAY-------P---ILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (532)
Q Consensus 292 -----------~e-----------l~~~le~i~~~g~-------~---lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~ 339 (532)
++ +...++++++.+. + ||+++++|++.++++|.++ +|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~- 315 (531)
T TIGR02347 243 EVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALR- 315 (531)
T ss_pred ccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEc-
Confidence 22 3445677777551 4 9999999999999999886 457776
Q ss_pred CCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEE---EEeCceEEEEcCCCChhhHHHHHHHHHHHHHh
Q 009575 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (532)
Q Consensus 340 ~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v---~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~ 416 (532)
++++++|+|||++|||++++ +++++++++||+|++| +++++++++|.+|+++
T Consensus 316 ----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------------- 370 (531)
T TIGR02347 316 ----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP---------------- 370 (531)
T ss_pred ----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEcCCCC----------------
Confidence 56689999999999999998 5889999999999999 5788899999988763
Q ss_pred hhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCC
Q 009575 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (532)
Q Consensus 417 ~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~ 495 (532)
.+|||+|||+|+.+++|++|+++||++++++++++| +||||||+||+|+.+|++++.+.+
T Consensus 371 -------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~ 431 (531)
T TIGR02347 371 -------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVK 431 (531)
T ss_pred -------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCC
Confidence 589999999999999999999999999999999999 999999999999999999987787
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 496 ~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 432 ~~~~-~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l 467 (531)
T TIGR02347 432 GKAK-LGVEAFANALLVIPKTLAENSGLDAQDTLVKL 467 (531)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8777 89999999999999999999999999998764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-80 Score=677.82 Aligned_cols=402 Identities=24% Similarity=0.348 Sum_probs=363.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.++++.|++||..|+++|++||||+||||||++++|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 11 ~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 86 (536)
T TIGR02340 11 QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDREVGDGT 86 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhc-ccccC--ch-hHHHHHhhhcC------ChhhHhH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQM-SKEVE--DS-ELADVAAVSAG------NNYEVGN 221 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~-s~~v~--~~-~l~~va~ts~~------~~~~is~ 221 (532)
||++||+++||+++.+++++|+||..|++||+.|.+.+++.|+++ ++|++ +. ++.++|+|+++ +++.|++
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~ 166 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSN 166 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999975 88987 44 89999999987 6789999
Q ss_pred HHHHHHHhhc---cCCc-------eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC
Q 009575 222 MIAEAMSKVG---RKGV-------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (532)
Q Consensus 222 li~eA~~~vg---~~g~-------I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~ 289 (532)
++++|+..++ .+|. |.+ ++|++++|+ ++++|++|+++|.+| +|+++++||+|++++++|+
T Consensus 167 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 167 IVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEEecCCC
Confidence 9999999996 2342 222 699999888 899999999999887 4788999999999999874
Q ss_pred CHH------------------------HHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCcc
Q 009575 290 NAR------------------------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (532)
Q Consensus 290 ~~~------------------------el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~ 345 (532)
..+ .+.+.++.+++.|++|||++++|++.++++|++++ +++++ ++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~-----rv 307 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVR-----RC 307 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEe-----cC
Confidence 432 12356788889999999999999999999999874 56665 66
Q ss_pred chhhHHHHHHHhCCeEeecCCCc-cccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009575 346 KSQYLDDIAILTGGTVIRDEVGL-ALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (532)
Q Consensus 346 ~k~~L~~ia~~tG~~ii~~~~~~-~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~ 421 (532)
++++|+|||++|||+++++..++ ..+++++++||+|++|+ +++++|++|.+++++
T Consensus 308 ~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--------------------- 366 (536)
T TIGR02340 308 KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR--------------------- 366 (536)
T ss_pred CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC---------------------
Confidence 79999999999999999976554 33456778899999999 788899999987653
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHH
Q 009575 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (532)
Q Consensus 422 e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (532)
.+|||+|||+|+.+++|++|+++||++++++++++| +|||||++||+++.+|+++++..++.+|
T Consensus 367 --------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~- 431 (536)
T TIGR02340 367 --------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 431 (536)
T ss_pred --------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH-
Confidence 489999999999999999999999999999999999 9999999999999999998777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 501 ~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+++++|++||+.||++||+|||+|+.+++.+|
T Consensus 432 ~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l 463 (536)
T TIGR02340 432 LAIAEFAEALLIIPKVLAVNAALDSTELVAKL 463 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 89999999999999999999999999998764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=672.75 Aligned_cols=404 Identities=23% Similarity=0.316 Sum_probs=361.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.++++.|+.+|..++++|++||||+||||||++++|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHhcCCc
Confidence 568899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--ch-hHHHHHhhhcC------ChhhHhHH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~------~~~~is~l 222 (532)
||++||+++|++++.++++.|+||..|++||++|.+.+++.|++++++++ +. +|.++|+||++ ++++|++|
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 89999999998 57899999
Q ss_pred HHHHHHhhccCCc----------eEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC---
Q 009575 223 IAEAMSKVGRKGV----------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (532)
Q Consensus 223 i~eA~~~vg~~g~----------I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~--- 289 (532)
+++|+.++++++. |.+++|++++|| ++++|++|+++|.+|++ +|..++||++++++++|+
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccc
Confidence 9999999998763 555799999999 99999999999999752 355678899988877642
Q ss_pred ----------CH-----------HHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchh
Q 009575 290 ----------NA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (532)
Q Consensus 290 ----------~~-----------~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~ 348 (532)
++ +++.++++.+++.|+||||++++|++++++.++.+.+++ .+|+||+ +++++
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~ 309 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIERE 309 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----cCCHH
Confidence 22 345678999999999999999999544444444444443 4788888 67799
Q ss_pred hHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 009575 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (532)
Q Consensus 349 ~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~ 425 (532)
+|+|||++|||++++ +++++++++||+|+.|++. ++.++++.++.+
T Consensus 310 ~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~-------------------------- 358 (515)
T cd03338 310 EIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN-------------------------- 358 (515)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCC--------------------------
Confidence 999999999999999 5888999999999999863 557888887753
Q ss_pred HHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHH
Q 009575 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (532)
Q Consensus 426 l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~ 504 (532)
++++|||+|||+|+.+++|++|+++||++++++++++| +|||||++||+|+.+|++++.+.++.+| ++++
T Consensus 359 --------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~ 429 (515)
T cd03338 359 --------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQ-YCVR 429 (515)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHH-HHHH
Confidence 24689999999999999999999999999999999999 9999999999999999999877777776 8999
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 505 IVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 505 ~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+|++||+.||++|++|||+|+.+++.+|
T Consensus 430 ~~a~al~~ip~~L~~NaG~d~~~~~~~l 457 (515)
T cd03338 430 AFADALEVIPYTLAENAGLNPISIVTEL 457 (515)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999999999999999999999998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-79 Score=671.88 Aligned_cols=402 Identities=24% Similarity=0.349 Sum_probs=364.1
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccc
Q 009575 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (532)
Q Consensus 65 ~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d 144 (532)
+..|| .++++.|+.|+..|++++++||||+||||||+++.|+++|||||+||+++|+++||+ |+|++++|++||
T Consensus 17 ~~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~ 90 (526)
T cd03339 17 KRLKG--LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQD 90 (526)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhh
Confidence 57888 899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc----h-hHHHHHhhhcCC----
Q 009575 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED----S-ELADVAAVSAGN---- 215 (532)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~----~-~l~~va~ts~~~---- 215 (532)
+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++. . .|.++|+||++.
T Consensus 91 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~ 170 (526)
T cd03339 91 DEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVS 170 (526)
T ss_pred hhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchh
Confidence 9999999999999999999999999999999999999999999999999999999862 3 799999999874
Q ss_pred --hhhHhHHHHHHHHhhccC-------Cce--EEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009575 216 --NYEVGNMIAEAMSKVGRK-------GVV--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (532)
Q Consensus 216 --~~~is~li~eA~~~vg~~-------g~I--~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~ 284 (532)
.+.|++++++|+..+.+. ..| ...+|++++|| ++++|++|+++|.+|+| +..++||||+++
T Consensus 171 ~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m-------~~~~~n~kI~ll 242 (526)
T cd03339 171 RCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM-------PKEVKDAKIAIL 242 (526)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCC-------CceecCCCEEEE
Confidence 478999999999988531 123 33699999999 89999999999999975 445678999988
Q ss_pred ccc-------------CCCHHH-----------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCC
Q 009575 285 DKK-------------ITNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (532)
Q Consensus 285 d~~-------------I~~~~e-----------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~ 340 (532)
+++ ++++++ +.++++++.+.|+||||++++|+++++++|.+|+ |.||+.
T Consensus 243 ~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~- 315 (526)
T cd03339 243 TCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRW- 315 (526)
T ss_pred EecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEe-
Confidence 865 355555 6777999999999999999999999999999874 467775
Q ss_pred CCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---e--CceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009575 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---T--KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (532)
Q Consensus 341 ~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~--~~~~~~i~g~~~~~~i~~r~~~i~~~l~ 415 (532)
+++++|+|||++|||++++ ++++++++.||+|+.|+. + +++++++++|+++
T Consensus 316 ----v~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~--------------- 371 (526)
T cd03339 316 ----VGGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS--------------- 371 (526)
T ss_pred ----CCHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC---------------
Confidence 4578899999999999999 588999999999999973 3 4688999988753
Q ss_pred hhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccC
Q 009575 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (532)
Q Consensus 416 ~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (532)
+.+||+|||+|+.+++|.||+++||++++++++++| +|||||++||+++++|++++..+
T Consensus 372 --------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~ 431 (526)
T cd03339 372 --------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKC 431 (526)
T ss_pred --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccC
Confidence 589999999999999999999999999999999999 99999999999999999998778
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++.+| +++++|++||+.||++|++|||+|+.+++.+|
T Consensus 432 ~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l 468 (526)
T cd03339 432 SGIEQ-YAMRAFADALESIPLALAENSGLNPIETLSEV 468 (526)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 88776 89999999999999999999999999998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-78 Score=665.34 Aligned_cols=400 Identities=22% Similarity=0.344 Sum_probs=365.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.+|..|+++|++||||+||||||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (522)
T cd03340 15 KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDAEVGDGT 90 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHhHhCCCh
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc------h-hHHHHHhhhcC------Chhh
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED------S-ELADVAAVSAG------NNYE 218 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~------~-~l~~va~ts~~------~~~~ 218 (532)
||+|+|+++||+++.++++.|+||..|++||+.|.+.+++.|+++++++++ . .|.++|+++++ ++++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEF 170 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHH
Confidence 999999999999999999999999999999999999999999999998864 3 69999999976 5799
Q ss_pred HhHHHHHHHHhhccCC---ceE--EecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccC-----
Q 009575 219 VGNMIAEAMSKVGRKG---VVT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI----- 288 (532)
Q Consensus 219 is~li~eA~~~vg~~g---~I~--v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I----- 288 (532)
|++++++|+.++++++ .|+ ..+|++++|| ++++|++|+++|.+|+|.+ |++.++||+|+++++++
T Consensus 171 l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~~----~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 171 FAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFEQ----QPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred HHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCcccccc----CCccccCCeEEEEeCCCCCCcc
Confidence 9999999999998865 333 2489999999 8999999999999998753 56779999999999984
Q ss_pred --------CCHHH-----------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhh
Q 009575 289 --------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (532)
Q Consensus 289 --------~~~~e-----------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~ 349 (532)
+++.+ +.+.++.+++.|+++|++++.|++.++++|.+++ |++++ ++++++
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~-----~v~~~~ 314 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAG-----RVPEED 314 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHH
Confidence 44443 4667888999999999999999999999999873 45555 567899
Q ss_pred HHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009575 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (532)
Q Consensus 350 L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l 426 (532)
|++||++|||++++ +++++++++||+|+.|+ ++++++++|.+|..+
T Consensus 315 l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------------------------- 363 (522)
T cd03340 315 LKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-------------------------- 363 (522)
T ss_pred HHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC--------------------------
Confidence 99999999999999 48889999999999998 577899999988653
Q ss_pred HHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHH
Q 009575 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (532)
Q Consensus 427 ~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~ 505 (532)
..+||++||+|+..++|.+|+++||++++++++++| +|||||++||+++.+|++++++.++++| +++++
T Consensus 364 ---------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~-~~~~~ 433 (522)
T cd03340 364 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LVINA 433 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHHH
Confidence 589999999999999999999999999999999998 9999999999999999999877777776 89999
Q ss_pred HHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 506 VKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 506 ~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++||+.||++|++|||+|+.+++.+|
T Consensus 434 fa~aL~~ip~~La~NaG~d~~~~l~~l 460 (522)
T cd03340 434 FAKALEIIPRQLCDNAGFDATDILNKL 460 (522)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=665.91 Aligned_cols=397 Identities=24% Similarity=0.380 Sum_probs=359.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.||..|++++++||||+||||||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 26 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GDGT 101 (532)
T TIGR02343 26 LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDDEIGDGT 101 (532)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHHHhcCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc----h-hHHHHHhhhcCC------hhhHh
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED----S-ELADVAAVSAGN------NYEVG 220 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~----~-~l~~va~ts~~~------~~~is 220 (532)
||+++|+++||+++.+++++|+||..|++||+.|++.+++.|++++++++. . .|.++|+|+++. .+.|+
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 181 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFA 181 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998853 3 799999998764 57899
Q ss_pred HHHHHHHHhhccC--C-----ce--EEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc----
Q 009575 221 NMIAEAMSKVGRK--G-----VV--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK---- 287 (532)
Q Consensus 221 ~li~eA~~~vg~~--g-----~I--~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~---- 287 (532)
++++||+..+... + .| ...+|++++|| ++++|++|+++|.+|+ |+..++||||++++++
T Consensus 182 ~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~-------m~~~~~n~kI~l~~~~le~~ 253 (532)
T TIGR02343 182 EIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQ-------MPKEVKDAKIAILTCPFEPP 253 (532)
T ss_pred HHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCC-------CCeeecCCcEEEEEeecccc
Confidence 9999999988531 1 23 33699999999 9999999999999987 4556788999998875
Q ss_pred ---------CCCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccch
Q 009575 288 ---------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (532)
Q Consensus 288 ---------I~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k 347 (532)
+++++++ .++++++++.|+||||++++|+++++++|.+|+ +.+|+. +++
T Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~~-----~~~ 322 (532)
T TIGR02343 254 KPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVRW-----VGG 322 (532)
T ss_pred ccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEEc-----CCH
Confidence 4556655 778999999999999999999999999999984 456764 457
Q ss_pred hhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eC--ceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHH
Q 009575 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TK--DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422 (532)
Q Consensus 348 ~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~--~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e 422 (532)
++|+|||++|||++++ +++++++++||+|++|+. +. ++++++.+|+++
T Consensus 323 ~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~---------------------- 375 (532)
T TIGR02343 323 HELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS---------------------- 375 (532)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC----------------------
Confidence 8899999999999999 588999999999999983 33 578899988763
Q ss_pred HHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHH
Q 009575 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKV 501 (532)
Q Consensus 423 ~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~ 501 (532)
.++||+|||+|+.+++|.||+++||+++++++++++ +|||||++||+|+++|++++.++++.+| +
T Consensus 376 -------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 441 (532)
T TIGR02343 376 -------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQ-Y 441 (532)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHH-H
Confidence 489999999999999999999999999999999996 9999999999999999999888888876 8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 502 GADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 502 ~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++++|++||+.||++||+|||+|+.+++.++
T Consensus 442 ~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l 472 (532)
T TIGR02343 442 AIRAFADALEEIPMALAENSGLDPIGTLSDL 472 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999999999999999999999999998764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-78 Score=665.52 Aligned_cols=397 Identities=20% Similarity=0.295 Sum_probs=361.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.+|..|+++|++||||+||||||+++.|+++|||||+|||++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (525)
T TIGR02344 15 RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhhhccCCc
Confidence 779999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc--h-hHHHHHhhhcCC------hhhHhHH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAGN------NYEVGNM 222 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~~------~~~is~l 222 (532)
||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++++. . .+.++|+|+++. ++.|++|
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l 170 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDL 170 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999873 3 799999887653 6899999
Q ss_pred HHHHHHhhccCC-----------ceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC
Q 009575 223 IAEAMSKVGRKG-----------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (532)
Q Consensus 223 i~eA~~~vg~~g-----------~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~ 289 (532)
+++|+..+++++ .|++ .+|++++|| ++++|++|++++.++ +|+.+++||+|++++++|+
T Consensus 171 ~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (525)
T TIGR02344 171 ALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLE 242 (525)
T ss_pred HHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccc
Confidence 999999998753 1344 579999998 899999999997765 4788899999999999875
Q ss_pred C-------------HHHHHHH-----------HHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCcc
Q 009575 290 N-------------ARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (532)
Q Consensus 290 ~-------------~~el~~~-----------le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~ 345 (532)
. ++++.++ ++++.+.|++|||+++.|++.++++|.++ +|+|++ ++
T Consensus 243 ~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~-----~v 311 (525)
T TIGR02344 243 YKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIR-----RV 311 (525)
T ss_pred cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEe-----cC
Confidence 4 4565554 44888899999999999999999998875 567655 77
Q ss_pred chhhHHHHHHHhCCeEeecCCCccccCCCCCCCce-eeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009575 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (532)
Q Consensus 346 ~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~-~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~ 421 (532)
++++|+|||++|||++++ ++++++++++|+ |+.|++ +++++++|++|+++
T Consensus 312 ~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 365 (525)
T TIGR02344 312 RKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--------------------- 365 (525)
T ss_pred CHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---------------------
Confidence 899999999999999999 588899999999 998886 56889999988753
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHH
Q 009575 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (532)
Q Consensus 422 e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (532)
..|||+|||+|+.+++|.||+++||+++++++++++ +|||||++||+|+.+|++++.+.++.+|
T Consensus 366 --------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~- 430 (525)
T TIGR02344 366 --------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ- 430 (525)
T ss_pred --------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH-
Confidence 489999999999999999999999999999999996 9999999999999999998888888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 501 ~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+++++|++||+.||++||+|||+|+.+++.+|
T Consensus 431 ~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l 462 (525)
T TIGR02344 431 WPYRAVADALEIIPRTLAQNCGVNVIRTLTEL 462 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 89999999999999999999999999998764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-78 Score=661.59 Aligned_cols=404 Identities=22% Similarity=0.318 Sum_probs=357.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.++..|+++|++||||+||||||+++.|+++|||||+|||++|+++||+ |+|++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 668899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--ch-hHHHHHhhhcCC------hhhHhHH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN------NYEVGNM 222 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~is~l 222 (532)
||+++|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +. .|.++|+||++. .+.|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 799999999863 5778999
Q ss_pred HHHHHHhhccC---Cc-----eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC---
Q 009575 223 IAEAMSKVGRK---GV-----VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (532)
Q Consensus 223 i~eA~~~vg~~---g~-----I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~--- 289 (532)
++||+..++++ |. |.+ ..|++++|+ ++++|++|+++|.++. +||+.++||+|++++++|+
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~~------~mpk~i~n~kI~ll~~~Le~~~ 236 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRSA------GGPTRIEKAKIGLIQFQISPPK 236 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEeccccccC------CCCccccCCcEEEEecCCCCCc
Confidence 99999999762 32 333 489999999 8999999999998742 4677789999999988753
Q ss_pred ----------CH-----------HHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchh
Q 009575 290 ----------NA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (532)
Q Consensus 290 ----------~~-----------~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~ 348 (532)
++ +++.++++++++.|+|||||+++|++++++.++.+.+++ .+|+||+ +++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~ 310 (517)
T TIGR02342 237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----DIERE 310 (517)
T ss_pred ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----cCCHH
Confidence 22 235678999999999999999999444444444444433 4788888 67799
Q ss_pred hHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE-E--eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 009575 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV-L--TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (532)
Q Consensus 349 ~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~-i--~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~ 425 (532)
+|+|||++|||++++ +++++++++||+|+.|+ + +++.++++.+++.
T Consensus 311 ~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~-------------------------- 359 (517)
T TIGR02342 311 EVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQN-------------------------- 359 (517)
T ss_pred HHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCC--------------------------
Confidence 999999999999999 48888999999999998 3 3556777877654
Q ss_pred HHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHH
Q 009575 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (532)
Q Consensus 426 l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~ 504 (532)
+++++||+|||+|+.+++|.+|+++||+++++++++++ +|||||++||+++.+|++++.+.++.+| ++++
T Consensus 360 --------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~ 430 (517)
T TIGR02342 360 --------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVES-YCVR 430 (517)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHH-HHHH
Confidence 24799999999999999999999999999999999986 9999999999999999999877878776 8999
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 505 IVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 505 ~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+|++||+.||++||+|||+|+.+++.+|
T Consensus 431 ~~a~al~~ip~~La~NaG~d~~~~l~~l 458 (517)
T TIGR02342 431 AFADALEVIPYTLAENAGLNPIDVVTEL 458 (517)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999998764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-78 Score=662.93 Aligned_cols=398 Identities=21% Similarity=0.335 Sum_probs=361.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.+|..|+++|++||||+||||||++++| ++|||||+|||++|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~~~GDGT 91 (522)
T TIGR02345 17 KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDSEVGDGT 91 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999 99999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC-----ch-hHHHHHhhhcC------ChhhH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-----DS-ELADVAAVSAG------NNYEV 219 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~-----~~-~l~~va~ts~~------~~~~i 219 (532)
||+|||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ +. .|.++|+|+++ ++++|
T Consensus 92 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l 171 (522)
T TIGR02345 92 TSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFF 171 (522)
T ss_pred hhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999997 33 79999999977 67999
Q ss_pred hHHHHHHHHhhccC-------CceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC---
Q 009575 220 GNMIAEAMSKVGRK-------GVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (532)
Q Consensus 220 s~li~eA~~~vg~~-------g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~--- 289 (532)
++++++|+.+++++ ++++ .+|++++|| ++++|++|+++|.+|+|.+ |+.+++||+|+++|++|+
T Consensus 172 ~~l~~~A~~~v~~~~~~~~~I~i~k-i~Ggs~~ds-~~v~Giv~~~~~~~~~~~~----~~~~~~n~kIll~~~~Le~~~ 245 (522)
T TIGR02345 172 SKMIVDAVLQLDIDDLDLKLIGVKK-VQGGSLQDS-VLVNGVAFKKTFSYAGFEQ----QPKKFANPKILLLNVELELKA 245 (522)
T ss_pred HHHHHHHHHHHhhccCChhHheEEe-ecCCCHHhc-ceecceEEecccCcccccc----CCceeccceEEEEecCcccCc
Confidence 99999999999875 2344 489999999 7999999999999998754 667899999999999863
Q ss_pred ----------CHHH-----------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchh
Q 009575 290 ----------NARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (532)
Q Consensus 290 ----------~~~e-----------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~ 348 (532)
++++ +.+.++.+++.|+++|+++++|++.++++|..+ +|++++ ++.++
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~-----~v~~~ 314 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCAG-----RVSDE 314 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEEe-----cCCHH
Confidence 3333 245577788899999999999999999999886 445554 66789
Q ss_pred hHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 009575 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (532)
Q Consensus 349 ~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~ 425 (532)
++++|+++||+++++ +++++++++||+|+.++. +++++++|.||+++
T Consensus 315 dl~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~------------------------- 364 (522)
T TIGR02345 315 DLKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA------------------------- 364 (522)
T ss_pred HHHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-------------------------
Confidence 999999999999999 488888999999999985 46789999887653
Q ss_pred HHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHH
Q 009575 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (532)
Q Consensus 426 l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~ 504 (532)
.+|||+|||+|+.+++|++|+++||+++++++++++ +|||||++||+++.+|++++.+.++.+| ++++
T Consensus 365 ----------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~i~ 433 (522)
T TIGR02345 365 ----------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQ-LIIE 433 (522)
T ss_pred ----------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHH-HHHH
Confidence 589999999999999999999999999999999985 9999999999999999998777778776 8999
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 505 IVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 505 ~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+|++||+.||++||+|||+|+.+++.+|
T Consensus 434 ~~a~aL~~ip~~La~NaG~d~~~vl~~l 461 (522)
T TIGR02345 434 AFAKALEIIPRSLCENAGFDSIEILNKL 461 (522)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999999999999999999999998764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=656.00 Aligned_cols=396 Identities=22% Similarity=0.343 Sum_probs=358.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecC--CCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK--YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~--~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GD 149 (532)
.++++.|+.|+..|+++|++||||+||||||+++ +|+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 12 ~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GD 87 (517)
T cd03336 12 ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHHhHhCC
Confidence 7899999999999999999999999999999998 59999999999999999999997 99999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc-----h-hHHHHHhhhcC------Chh
Q 009575 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAG------NNY 217 (532)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~------~~~ 217 (532)
||||+|||+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++ . .|.++|+|+++ +++
T Consensus 88 GTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~ 167 (517)
T cd03336 88 GTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKE 167 (517)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999841 2 79999997754 468
Q ss_pred hHhHHHHHHHHhhccC---Cce--EEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC---
Q 009575 218 EVGNMIAEAMSKVGRK---GVV--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (532)
Q Consensus 218 ~is~li~eA~~~vg~~---g~I--~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~--- 289 (532)
+|++|+++|+.++++. ..| ...+|++++|+ ++++|+++++++.+ .|+++++||+|+++|++|+
T Consensus 168 ~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~--------~~~~~~~n~kIli~~~~le~~~ 238 (517)
T cd03336 168 HFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 238 (517)
T ss_pred HHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCC--------CCCCeeccccEEEEecCCCccc
Confidence 9999999999999642 223 33589999999 89999999998643 2577899999999999764
Q ss_pred -----------CHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccch
Q 009575 290 -----------NARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (532)
Q Consensus 290 -----------~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k 347 (532)
+++++ .+.++.+++.|++++++++.|++.++++|.++ +|+||+.|+ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~-----~ 307 (517)
T cd03336 239 IKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHAD-----F 307 (517)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCC-----H
Confidence 45544 33578889999999999999999999999876 578999776 5
Q ss_pred hhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 009575 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (532)
Q Consensus 348 ~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~ 424 (532)
++|+|||++|||++++ +++++++++||+|+.|+. +++++++|.+|+.
T Consensus 308 ~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 357 (517)
T cd03336 308 DGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA------------------------- 357 (517)
T ss_pred HHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCC-------------------------
Confidence 6799999999999999 588899999999999974 5778999998865
Q ss_pred HHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHH
Q 009575 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (532)
Q Consensus 425 ~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~ 503 (532)
++.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++||+|+..|++++++.++.+| +++
T Consensus 358 ----------~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 426 (517)
T cd03336 358 ----------GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKS-LAI 426 (517)
T ss_pred ----------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHH-HHH
Confidence 3689999999999999999999999999999999998 9999999999999999999888888777 899
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 504 ~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++|++||+.||++||+|||+|+.+++.+|
T Consensus 427 ~~~a~ALe~ip~~La~NaG~d~~~~l~~l 455 (517)
T cd03336 427 EAFAKALRQLPTIIADNAGYDSAELVAQL 455 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >PTZ00212 T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-77 Score=656.61 Aligned_cols=396 Identities=21% Similarity=0.352 Sum_probs=359.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecC-----CCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK-----YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDL 146 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~-----~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~ 146 (532)
++++..|+.|+..|+++|++||||+||||||+++ +|+++|||||+||+|+|+++||. |+|++++|++||++
T Consensus 21 ~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~a~~qd~~ 96 (533)
T PTZ00212 21 ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDISKTQDEE 96 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHhhhhh
Confidence 7899999999999999999999999999999998 69999999999999999999997 99999999999999
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc-----h-hHHHHHhhhcCC-----
Q 009575 147 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAGN----- 215 (532)
Q Consensus 147 ~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~~----- 215 (532)
+||||||+|+|+++||+++.+++++|+||..|++||++|++.+++.|+++++|+++ . +|.++|+|+++.
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~ 176 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTV 176 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999999999999999999999864 3 799999987653
Q ss_pred -hhhHhHHHHHHHHhhccC---Cc--eEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccC-
Q 009575 216 -NYEVGNMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI- 288 (532)
Q Consensus 216 -~~~is~li~eA~~~vg~~---g~--I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I- 288 (532)
.+.|++++++|+..+.+. .. |...+|++++|| ++++|+++++++.+ .|+++++||+|+++|++|
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKRLENCKILVANTPMD 247 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCccccCCcEEEEeCCCC
Confidence 588999999999998542 22 344699999999 89999999998643 267889999999999986
Q ss_pred -------------CCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCc
Q 009575 289 -------------TNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGE 344 (532)
Q Consensus 289 -------------~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~ 344 (532)
++++++ .+.++.+++.|++++++++.|++.++++|.++ +|+||+ +
T Consensus 248 ~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr-----~ 316 (533)
T PTZ00212 248 TDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAIE-----H 316 (533)
T ss_pred CCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEEe-----c
Confidence 555544 23577888999999999999999999999887 568887 4
Q ss_pred cchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009575 345 RKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (532)
Q Consensus 345 ~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~ 421 (532)
+++++++|||++|||++++ +++++++++||+|++|+ ++++++++|.+|..
T Consensus 317 v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~---------------------- 369 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK---------------------- 369 (533)
T ss_pred CCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC----------------------
Confidence 5578999999999999999 58889999999999998 67889999988754
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHH
Q 009575 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (532)
Q Consensus 422 e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (532)
+++|||+|||+|+.+++|+||+++||++++++++++| +||||||+|++++.+|++++++..+.+|
T Consensus 370 -------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~- 435 (533)
T PTZ00212 370 -------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS- 435 (533)
T ss_pred -------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH-
Confidence 4699999999999999999999999999999999998 9999999999999999999887878777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 501 ~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+++++|++||+.||++||+|||+|+.+++.+|
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l 467 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDSAELVSKL 467 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 89999999999999999999999999998764
|
|
| >TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-77 Score=656.98 Aligned_cols=396 Identities=23% Similarity=0.322 Sum_probs=355.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.+|..|+++|++||||+||||||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~~~GDGT 92 (531)
T TIGR02346 17 EEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQENEIGDGT 92 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 458999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhccc-ccCc---h-hHHHHHhhhcC-----ChhhHhH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVED---S-ELADVAAVSAG-----NNYEVGN 221 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~-~v~~---~-~l~~va~ts~~-----~~~~is~ 221 (532)
||+|||+++||+++.+++++|+||..|++||+.|++.+++.|+++++ ++++ . .+.++++++++ ++++|++
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~ 172 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQ 172 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999986 7744 3 79999888774 4899999
Q ss_pred HHHHHHHhhccCC--c-----eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccC----
Q 009575 222 MIAEAMSKVGRKG--V-----VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (532)
Q Consensus 222 li~eA~~~vg~~g--~-----I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I---- 288 (532)
|+++|+.++++++ . |.+ .+|++++|+ ++++|++|++++. .+++.++||||+++++++
T Consensus 173 l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~~l~~~~ 242 (531)
T TIGR02346 173 LVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSCPLDTAT 242 (531)
T ss_pred HHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEecCcCCCc
Confidence 9999999998764 3 222 489999999 8999999999832 145678899999998874
Q ss_pred ---------CCHH-----------HHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchh
Q 009575 289 ---------TNAR-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (532)
Q Consensus 289 ---------~~~~-----------el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~ 348 (532)
++++ ++.++++++++.|+||||++++|++.++++|..+ +|+||++|++ .
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~~-----~ 311 (531)
T TIGR02346 243 TETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPSK-----F 311 (531)
T ss_pred ccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCCH-----H
Confidence 3333 3567799999999999999999999999988754 6899998874 5
Q ss_pred hHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 009575 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (532)
Q Consensus 349 ~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~ 425 (532)
+|+|||.+|||++++ +++++++++||+|++|++ +++.+.++.++..
T Consensus 312 ~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-------------------------- 360 (531)
T TIGR02346 312 ELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-------------------------- 360 (531)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC--------------------------
Confidence 889999999999998 488888999999999985 4567888887542
Q ss_pred HHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHH
Q 009575 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (532)
Q Consensus 426 l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~ 504 (532)
.++++||+|||+|+.+++|++|+++||++++++++++| +||||||+||+|+.+|++++.+.++.+| ++++
T Consensus 361 --------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~-~~~~ 431 (531)
T TIGR02346 361 --------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQ-YAIK 431 (531)
T ss_pred --------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHH
Confidence 25799999999999999999999999999999999999 9999999999999999999877778776 8999
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 505 IVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 505 ~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+|++||+.||++|++|||+|+.+++.+|
T Consensus 432 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l 459 (531)
T TIGR02346 432 KFAEAFEIIPRTLAENAGLNPNEVIPKL 459 (531)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999998764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-77 Score=649.41 Aligned_cols=380 Identities=21% Similarity=0.321 Sum_probs=349.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.++..|++++++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~~GDGT 90 (480)
T cd03337 15 RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHHHhCCCc
Confidence 779999999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--ch-hHHHHHhhhcC------ChhhHhHH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~------~~~~is~l 222 (532)
||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++++ +. .+.++++|+++ +++.|+++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~l 170 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNL 170 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 89999999987 57899999
Q ss_pred HHHHHHhhccC--C---------ceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC
Q 009575 223 IAEAMSKVGRK--G---------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (532)
Q Consensus 223 i~eA~~~vg~~--g---------~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~ 289 (532)
+++|+..++++ + .|++ .+|++++|| ++++|++|++++.+| +|+.+++||+|++++++|+
T Consensus 171 v~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 171 ALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLE 242 (480)
T ss_pred HHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcc
Confidence 99999999864 3 2333 579999998 899999999999886 4888999999999999987
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCcc
Q 009575 290 NARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLA 369 (532)
Q Consensus 290 ~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~ 369 (532)
. |||++++|+++++++|.+| +|++|+ ++++++|+|||++|||++++ +
T Consensus 243 ~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~rIa~~tGa~ii~-----~ 289 (480)
T cd03337 243 Y-----------------LVITEKGVSDLAQHYLVKA------GITALR-----RVRKTDNNRIARACGATIVN-----R 289 (480)
T ss_pred e-----------------EEEeCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHHCCEEec-----c
Confidence 6 9999999999999999987 568887 56789999999999999999 4
Q ss_pred ccCCCCCCCcee-eEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCC
Q 009575 370 LDKVGKEVLGNA-SKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQ 445 (532)
Q Consensus 370 l~~~~~~~lG~~-~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~ 445 (532)
++++++++||+| +.++. ++++++++++|+++ +.+||+|||+
T Consensus 290 ~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~ 334 (480)
T cd03337 290 PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-----------------------------------KACTILLRGA 334 (480)
T ss_pred hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-----------------------------------CEEEEEEECC
Confidence 888889999995 44442 46788999988753 5899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 009575 446 TETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVN 524 (532)
Q Consensus 446 te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d 524 (532)
|+.+++|.||+++||+++++++++++ +|||||++||+++.+|++++.+.++.+| +++++|++||+.||++||+|||+|
T Consensus 335 t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~La~NaG~d 413 (480)
T cd03337 335 SKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQ-WPYKAVASALEVIPRTLAQNCGAN 413 (480)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996 9999999999999999998888888877 899999999999999999999999
Q ss_pred hhhhhccC
Q 009575 525 GSVVSEKV 532 (532)
Q Consensus 525 ~~~vi~kl 532 (532)
+.+++.+|
T Consensus 414 ~~~~l~~l 421 (480)
T cd03337 414 VIRTLTEL 421 (480)
T ss_pred HHHHHHHH
Confidence 99998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd00309 chaperonin_type_I_II chaperonin families, type I and type II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-76 Score=638.16 Aligned_cols=385 Identities=38% Similarity=0.553 Sum_probs=354.7
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccc
Q 009575 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (532)
Q Consensus 65 ~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d 144 (532)
+..++ ++++..+++|+..|++++++||||+||+|||+++.|+++|||||+||+|+|+++||. |+|+++++++||
T Consensus 2 ~~~~~--~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~ 75 (464)
T cd00309 2 EREFG--EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQD 75 (464)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHH
Confidence 45666 899999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccc--cCch-hHHHHHhhhcC------C
Q 009575 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE--VEDS-ELADVAAVSAG------N 215 (532)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~--v~~~-~l~~va~ts~~------~ 215 (532)
+++||||||+++|+++|++++.+++++|+||..|++||+.|++.+++.|++++++ +.+. ++.++|+|+++ +
T Consensus 76 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~ 155 (464)
T cd00309 76 DEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGG 155 (464)
T ss_pred hHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999 4444 89999999998 7
Q ss_pred hhhHhHHHHHHHHhhcc------CCceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc
Q 009575 216 NYEVGNMIAEAMSKVGR------KGVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK 287 (532)
Q Consensus 216 ~~~is~li~eA~~~vg~------~g~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~ 287 (532)
++.|++++++|+.++++ .+.|++ .+|++++|| ++++|++|+++|.+|+| +++++||+|++++++
T Consensus 156 ~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~ 227 (464)
T cd00309 156 DDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCK 227 (464)
T ss_pred hHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCCC-------ceeecCceEEEEecC
Confidence 99999999999999998 566666 489999999 89999999999999974 678999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCC
Q 009575 288 ITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367 (532)
Q Consensus 288 I~~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~ 367 (532)
|+. |||+.++|+++++++|.++ +|++|+. +++++|+|||++||++++++
T Consensus 228 Le~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~~-----~~~~~L~~Ia~~tGa~ii~~--- 276 (464)
T cd00309 228 LEY-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVSR--- 276 (464)
T ss_pred cce-----------------EEecCCCcCHHHHHHHHHC------CeEEEEe-----CCHHHHHHHHHHhCCEEecc---
Confidence 887 7787778999999999875 6788884 56899999999999999984
Q ss_pred ccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCC
Q 009575 368 LALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGA 444 (532)
Q Consensus 368 ~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G 444 (532)
+++++++.+|+|+.|++ +++++++|.++.. +.+|||+|||
T Consensus 277 --~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-----------------------------------~~~~TIllrG 319 (464)
T cd00309 277 --LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-----------------------------------GKVATILLRG 319 (464)
T ss_pred --cccCCcccCccccEEEEEEEcCeeEEEEEecCC-----------------------------------CCEEEEEEeC
Confidence 78888999999999986 4567888887654 3689999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 009575 445 QTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV 523 (532)
Q Consensus 445 ~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~ 523 (532)
+|+.+++|+||+++||+++++++++++ +|||||++||+++++|++++.+.++.+| +++++|++||+.||++|++|||+
T Consensus 320 ~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~ 398 (464)
T cd00309 320 ATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQ-LGIEAFADALEVIPRTLAENAGL 398 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999996 9999999999999999999877777766 89999999999999999999999
Q ss_pred ChhhhhccC
Q 009575 524 NGSVVSEKV 532 (532)
Q Consensus 524 d~~~vi~kl 532 (532)
|+.+++.+|
T Consensus 399 d~~~~~~~l 407 (464)
T cd00309 399 DPIEVVTKL 407 (464)
T ss_pred CHHHHHHHH
Confidence 999998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-76 Score=639.09 Aligned_cols=383 Identities=22% Similarity=0.294 Sum_probs=347.4
Q ss_pred cHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCcc
Q 009575 71 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDG 150 (532)
Q Consensus 71 ~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDG 150 (532)
.++++..|+.++..|+++|++||||+||||||++++|+++|||||+||+++|+++||+ |+|++++|++||+++|||
T Consensus 6 ~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~~GDG 81 (472)
T cd03341 6 LEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEEIGDG 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCC
Confidence 3778999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccc-cCc---h-hHHHHHhhhc-----CChhhHh
Q 009575 151 TTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE-VED---S-ELADVAAVSA-----GNNYEVG 220 (532)
Q Consensus 151 TTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~-v~~---~-~l~~va~ts~-----~~~~~is 220 (532)
|||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++ +++ . .+.+++++++ +++++|+
T Consensus 82 TTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~ 161 (472)
T cd03341 82 TNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLS 161 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999876 543 2 5778888774 4578999
Q ss_pred HHHHHHHHhhccC--Cce-------EEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCH
Q 009575 221 NMIAEAMSKVGRK--GVV-------TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA 291 (532)
Q Consensus 221 ~li~eA~~~vg~~--g~I-------~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~ 291 (532)
+|+++|+.+++++ |.+ ...+|++++|| ++++|++|++.+. .++++++||+|++++++|+.
T Consensus 162 ~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~Le~- 230 (472)
T cd03341 162 PLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPFDI- 230 (472)
T ss_pred HHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEeccccC-
Confidence 9999999999875 432 23489999999 9999999987531 24578999999999999887
Q ss_pred HHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCcccc
Q 009575 292 RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALD 371 (532)
Q Consensus 292 ~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~ 371 (532)
|+||||++++|+++++++|.++ +|+||++|+ +++|+|||++|||+++++ ++
T Consensus 231 -------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~ 281 (472)
T cd03341 231 -------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLPR-----LG 281 (472)
T ss_pred -------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEecc-----cc
Confidence 8999999999999999997653 789999877 788999999999999984 78
Q ss_pred CCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHH
Q 009575 372 KVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 448 (532)
Q Consensus 372 ~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~ 448 (532)
+++++++|+|++|++. ++++++|.++++. ++++||+|||+|+.
T Consensus 282 ~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------------------~~~~TI~lrG~t~~ 327 (472)
T cd03341 282 APTPEEIGYCDSVYVEEIGDTKVVVFRQNKED----------------------------------SKIATIVLRGATQN 327 (472)
T ss_pred cCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------------------------------CCeEEEEEECCCHH
Confidence 8889999999999875 4889999887541 46899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Q 009575 449 ELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSV 527 (532)
Q Consensus 449 ~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~ 527 (532)
+++|+||+++||++++++++++| +|||||++||+++.+|++++.+.++.++ +++++|++||+.||++|++|||+||.+
T Consensus 328 ~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~L~~NaG~d~~~ 406 (472)
T cd03341 328 ILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQ-YAIKKFAEAFEVVPRTLAENAGLDATE 406 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999 9999999999999999998877777766 899999999999999999999999999
Q ss_pred hhccC
Q 009575 528 VSEKV 532 (532)
Q Consensus 528 vi~kl 532 (532)
++.+|
T Consensus 407 ~~~~l 411 (472)
T cd03341 407 VLSEL 411 (472)
T ss_pred HHHHH
Confidence 98764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-75 Score=640.74 Aligned_cols=396 Identities=23% Similarity=0.348 Sum_probs=356.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCC--CCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKY--GAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~--g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GD 149 (532)
.+++..|+.|+..|+++|++||||+||||||+++. |+++|||||+|||++|+++||. |+|++++|++||+++||
T Consensus 13 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd~~~GD 88 (519)
T TIGR02341 13 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQDDEVGD 88 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhHhhhCC
Confidence 77999999999999999999999999999999985 9999999999999999999997 99999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc-----h-hHHHHHhhhcCC------hh
Q 009575 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAGN------NY 217 (532)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~~------~~ 217 (532)
||||+|||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++ . +|.++|+|+++. .+
T Consensus 89 GTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~ 168 (519)
T TIGR02341 89 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKD 168 (519)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999853 2 789999988763 47
Q ss_pred hHhHHHHHHHHhhccC---CceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCC--
Q 009575 218 EVGNMIAEAMSKVGRK---GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITN-- 290 (532)
Q Consensus 218 ~is~li~eA~~~vg~~---g~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~-- 290 (532)
.|++++++|+..+.+. ..|.+ .+|++++|+ ++++|+++++++.+ .|+++++||+|+++|++|+.
T Consensus 169 ~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~Le~~~ 239 (519)
T TIGR02341 169 HFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKRIENAKILIANTPMDTDK 239 (519)
T ss_pred HHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCceeeccccEEEEecCCCCCc
Confidence 8999999999998432 23554 389999999 89999999998543 25778999999999998753
Q ss_pred ------------HHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccch
Q 009575 291 ------------ARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (532)
Q Consensus 291 ------------~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k 347 (532)
++++ .++++.+++.|++++++++.|++.++++|..+ +|++|+.|+ +
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~-----~ 308 (519)
T TIGR02341 240 VKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHAD-----F 308 (519)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCC-----H
Confidence 3333 23477889999999999999999999998776 678998776 5
Q ss_pred hhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 009575 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (532)
Q Consensus 348 ~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~ 424 (532)
.+|+|||++|||++++ +++++++++||+|+.|+. +++++++|.+|++
T Consensus 309 ~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 358 (519)
T TIGR02341 309 EGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL------------------------- 358 (519)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCC-------------------------
Confidence 6899999999999999 588889999999999974 5778999998865
Q ss_pred HHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHH
Q 009575 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (532)
Q Consensus 425 ~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~ 503 (532)
+++|||+|||+|+.+++|.+|+++||+++++++++++ +||||||+||+|++.|++++++.++.+| +++
T Consensus 359 ----------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 427 (519)
T TIGR02341 359 ----------GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEA-LAV 427 (519)
T ss_pred ----------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHH-HHH
Confidence 3689999999999999999999999999999999996 9999999999999999998877778777 899
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 504 ~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++|++||+.||++||+|||+|+.+++.+|
T Consensus 428 ~~~a~Ale~ip~~La~NaG~d~~~~l~~l 456 (519)
T TIGR02341 428 EAFARALRQLPTIIADNAGFDSAELVAQL 456 (519)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 99999999999999999999999998764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=573.15 Aligned_cols=400 Identities=21% Similarity=0.339 Sum_probs=366.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.-..-.|+.+|..+++.+++||||+||||+|++..|+.+|+|||+||+|-+++-||+ ||.|+++|++||.++||||
T Consensus 19 k~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPa----aktlVdia~sQDaEVGDGT 94 (543)
T KOG0361|consen 19 KGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPA----AKTLVDIARSQDAEVGDGT 94 (543)
T ss_pred chhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChh----HHHHHHHHhhccccccCCc
Confidence 446678999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-------hHHHHHhhhcC------Chhh
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-------ELADVAAVSAG------NNYE 218 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-------~l~~va~ts~~------~~~~ 218 (532)
||||+||+|+|+++..+++.|+||..|+++|++|...+++.|+++++.++.. .|++.|.|+++ ..++
T Consensus 95 TSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~f 174 (543)
T KOG0361|consen 95 TSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEF 174 (543)
T ss_pred eeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999988732 57788888764 4799
Q ss_pred HhHHHHHHHHhhccC---Cc--eEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccC-----
Q 009575 219 VGNMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI----- 288 (532)
Q Consensus 219 is~li~eA~~~vg~~---g~--I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I----- 288 (532)
|++|++||+..+..+ .. |++.+|++++|| .+++|+-|.+.|....| +.+|+.|.||||+++|..+
T Consensus 175 F~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELElKaE 249 (543)
T KOG0361|consen 175 FAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELELKAE 249 (543)
T ss_pred HHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEeeeeeeccc
Confidence 999999999999854 22 666899999999 79999999999877766 6788999999999998753
Q ss_pred --------CCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhh
Q 009575 289 --------TNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (532)
Q Consensus 289 --------~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~ 349 (532)
++++++ .+.|+++..+|.++|+..-.|.|.|.++|+...+ .+.|+++.++
T Consensus 250 kdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----------FCAGRV~~eD 318 (543)
T KOG0361|consen 250 KDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----------FCAGRVPEED 318 (543)
T ss_pred ccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----------eecCcCCHHH
Confidence 445544 4568899999999999999999999999988654 5778999999
Q ss_pred HHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009575 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (532)
Q Consensus 350 L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l 426 (532)
|.|+..+|||++.+ +..++.++.||.|..++ ++.++|-+|+||+..
T Consensus 319 l~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a-------------------------- 367 (543)
T KOG0361|consen 319 LNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKA-------------------------- 367 (543)
T ss_pred HHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCcc--------------------------
Confidence 99999999999998 57889999999999997 688999999999863
Q ss_pred HHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHH
Q 009575 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (532)
Q Consensus 427 ~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~ 505 (532)
..||+++||+-++.++|.+|++|||++++|.|+++. ||+|||+.||++|++|++++.++.+++| +.+.+
T Consensus 368 ---------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q-~~i~A 437 (543)
T KOG0361|consen 368 ---------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LFINA 437 (543)
T ss_pred ---------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHH-HHHHH
Confidence 589999999999999999999999999999999998 9999999999999999999999999887 78999
Q ss_pred HHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 506 VKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 506 ~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++|||.||++||+|||+|..++++||
T Consensus 438 ~akalEvIPrqLc~NaGfDa~~ilnkL 464 (543)
T KOG0361|consen 438 YAKALEVIPRQLCDNAGFDATNILNKL 464 (543)
T ss_pred HHHHHHHhHHHHhhhcCCcHHHHHHHH
Confidence 999999999999999999999999875
|
|
| >PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-70 Score=591.45 Aligned_cols=383 Identities=30% Similarity=0.480 Sum_probs=346.6
Q ss_pred HHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCcccchHHHHHHHHHHH
Q 009575 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAE 164 (532)
Q Consensus 85 la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGTTt~vvLa~~Ll~~ 164 (532)
|+++|++||||+||+|||++..|+++|||||+||+++++++||+ ++|+++++++|++++||||||+++|+++||++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch--hHHHHHhhhcCCh------hhHhHHHHHHHHhhc-----
Q 009575 165 GVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS--ELADVAAVSAGNN------YEVGNMIAEAMSKVG----- 231 (532)
Q Consensus 165 ~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~--~l~~va~ts~~~~------~~is~li~eA~~~vg----- 231 (532)
+.+++++|+||..|++||+.+.+.+++.|++++++++.+ .++++++++++++ +.|++++++|+..+.
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999998864 8999999998876 999999999994432
Q ss_pred -cCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHH-----------------
Q 009575 232 -RKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD----------------- 293 (532)
Q Consensus 232 -~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~e----------------- 293 (532)
..++++ .+|++++|| ++++|++|+++|.+| +|+.+++||+|++++++|+..+.
T Consensus 157 ~~i~i~~-i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~ 227 (485)
T PF00118_consen 157 DNIKIIK-IPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELS 227 (485)
T ss_dssp GGEEEEE-EESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHH
T ss_pred cchhhhh-hcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHH
Confidence 223333 588888999 899999999999887 47778899999999999876665
Q ss_pred ------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCC
Q 009575 294 ------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367 (532)
Q Consensus 294 ------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~ 367 (532)
+.++++++.+.|+++||++++|++.++++|..+++ .++ .++++++|++|+.+||++++++
T Consensus 228 ~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~~i-----~~v~~~~l~~i~~~tg~~ii~~--- 293 (485)
T PF00118_consen 228 KQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI------LVI-----RRVSKEDLERIARATGASIISS--- 293 (485)
T ss_dssp HHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH------EEE-----SSEHHHHHHHHHHHHTSBEBSS---
T ss_pred hhhhhhhccccceEeeeccceeeeecccccccchhhhhhhh------hcc-----ccchHHHHHhhhcccCCcEecc---
Confidence 88899999999999999999999999999998865 333 3668999999999999999994
Q ss_pred ccccCCCCCCCceeeEE---EEeCceEEEEcC--CCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEe
Q 009575 368 LALDKVGKEVLGNASKV---VLTKDTTTIVGD--GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQV 442 (532)
Q Consensus 368 ~~l~~~~~~~lG~~~~v---~i~~~~~~~i~g--~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v 442 (532)
+++++++.+|+|+.+ ++++++++++.+ +. .+..+||+|
T Consensus 294 --~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till 336 (485)
T PF00118_consen 294 --LDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILL 336 (485)
T ss_dssp --CGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEE
T ss_pred --cccccchhhhhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEe
Confidence 688888889999999 577899999983 32 357999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHc
Q 009575 443 GAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNA 521 (532)
Q Consensus 443 ~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NA 521 (532)
||+|+.+++|++++++||+++++++++++ +|||||++|++|+++|++++.+.++.++ +++++|++||+.||++|++||
T Consensus 337 ~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~Na 415 (485)
T PF00118_consen 337 RGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQ-LAIEAFADALESIPKTLAQNA 415 (485)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHTTHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchh-hhHHHHHHHHHHhhhhhhhcc
Confidence 99999999999999999999999999987 9999999999999999999888777765 899999999999999999999
Q ss_pred CCChhhhhccC
Q 009575 522 GVNGSVVSEKV 532 (532)
Q Consensus 522 G~d~~~vi~kl 532 (532)
|+|+.++++++
T Consensus 416 G~~~~~~~~~l 426 (485)
T PF00118_consen 416 GLDSSEVISKL 426 (485)
T ss_dssp TSTHHHHHHHH
T ss_pred CCCceeeehhh
Confidence 99999998764
|
Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A .... |
| >KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=526.65 Aligned_cols=396 Identities=23% Similarity=0.363 Sum_probs=356.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecC--CCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK--YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~--~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GD 149 (532)
+.+|...+.|...+.|+|+|||||+||+||+.+. .|.+.|||||+||||+|.+++|+ ||+|++.+.-||+++||
T Consensus 17 e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQD~EvGD 92 (527)
T KOG0363|consen 17 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 92 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheeccccccccccCC
Confidence 7899999999999999999999999999999863 46799999999999999999999 99999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch------hHHHHHhhhcC------Chh
Q 009575 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS------ELADVAAVSAG------NNY 217 (532)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~------~l~~va~ts~~------~~~ 217 (532)
|||||+||+++||+|+.+|+.+.+||..|+.||+.|...+++.|.+.+++-..+ +|.++|+|.+. ..+
T Consensus 93 GTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~ke 172 (527)
T KOG0363|consen 93 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKE 172 (527)
T ss_pred CceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999988765422 89999998764 469
Q ss_pred hHhHHHHHHHHhhccCCc-----eEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC---
Q 009575 218 EVGNMIAEAMSKVGRKGV-----VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (532)
Q Consensus 218 ~is~li~eA~~~vg~~g~-----I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~--- 289 (532)
+|++|.++|+.++...+. |.++.|++++|| .+-+|+.+++.+-. .+|+.++||+||+-+.+++
T Consensus 173 hFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDK 243 (527)
T KOG0363|consen 173 HFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 243 (527)
T ss_pred HHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCCcccc
Confidence 999999999999865432 444799999999 79999999986432 3677899999999887632
Q ss_pred -----------CH-----------HHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccch
Q 009575 290 -----------NA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (532)
Q Consensus 290 -----------~~-----------~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k 347 (532)
+. +.+...++++.++|+|++|-.+-|.++..++|... +|++|....|
T Consensus 244 vKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHADF----- 312 (527)
T KOG0363|consen 244 VKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHADF----- 312 (527)
T ss_pred eeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeecccc-----
Confidence 21 13567899999999999999999999999988765 5788887776
Q ss_pred hhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 009575 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (532)
Q Consensus 348 ~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~ 424 (532)
+-+||++.+|||.+++ ++++++...||+|+.++ ++++.++.|+|+.-
T Consensus 313 dGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~------------------------- 362 (527)
T KOG0363|consen 313 DGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL------------------------- 362 (527)
T ss_pred hhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeeccccc-------------------------
Confidence 5679999999999999 69999999999999996 68999999999864
Q ss_pred HHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHH
Q 009575 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (532)
Q Consensus 425 ~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~ 503 (532)
|..|||++||+|++.+||.+|++|||||++...+++. +|.||||.||.+++.+.+++...++++. +++
T Consensus 363 ----------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea-~Ai 431 (527)
T KOG0363|consen 363 ----------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEA-LAI 431 (527)
T ss_pred ----------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhh-HHH
Confidence 4589999999999999999999999999999999998 9999999999999999999999999887 899
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 504 ~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++|++||.++|.+||.|||||+.+++.+|
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva~L 460 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVAQL 460 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHHHH
Confidence 99999999999999999999999998754
|
|
| >KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-68 Score=529.84 Aligned_cols=403 Identities=23% Similarity=0.337 Sum_probs=354.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+.|..|+++.+.++|+++|||||+||||||....|+++|||||+||||.|++-||+ |+||++++..||.++||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccccccCCc
Confidence 678999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--ch-hHHHHHhhhcC------ChhhHhHH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~------~~~~is~l 222 (532)
||||+||++||+.+.+|+++|+||..|...|+.|.+..+++|++++.|++ +. .|.+.|+||+| +...++.|
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999999998876 34 58889999986 46789999
Q ss_pred HHHHHHhhcc-C-------CceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC---
Q 009575 223 IAEAMSKVGR-K-------GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (532)
Q Consensus 223 i~eA~~~vg~-~-------g~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~--- 289 (532)
.+||+.++-. . ..|++ +.|++++|+ ++++|++|+...... ..|..++++||-+..+.|+
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCC
Confidence 9999999854 2 12443 699999999 999999999764331 1456678889888776543
Q ss_pred ----------CHH-----------HHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchh
Q 009575 290 ----------NAR-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (532)
Q Consensus 290 ----------~~~-----------el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~ 348 (532)
++. .++++++++++.|++++++++.|=.++++-|..+.+ ..++|++|| ++.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL-~klkimvik-----dieRe 326 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFL-AKLKIMVIK-----DIERE 326 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHH-HhCcEEEEc-----cccHh
Confidence 332 257789999999999999999886666555554444 236899998 77899
Q ss_pred hHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE----eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 009575 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL----TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (532)
Q Consensus 349 ~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i----~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~ 424 (532)
+++.+++.+|++++. +++.++++.||+++-++. ++.+++-+.|..+.
T Consensus 327 diefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~------------------------ 377 (534)
T KOG0358|consen 327 DIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA------------------------ 377 (534)
T ss_pred hHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC------------------------
Confidence 999999999999999 499999999999999974 34467777776542
Q ss_pred HHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHH
Q 009575 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (532)
Q Consensus 425 ~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~ 503 (532)
|..++|++||.+...++|.+|++|||||++|+.++.. ++||||+-||.++..|.++++++.+.+. +..
T Consensus 378 ----------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~-yc~ 446 (534)
T KOG0358|consen 378 ----------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEA-YCW 446 (534)
T ss_pred ----------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchh-HHH
Confidence 5789999999999999999999999999999999997 9999999999999999999999999987 799
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 504 ~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+.|++|||.+|.|||+|||++|..++.+|
T Consensus 447 rafA~AlEvIP~tLAeNAGLnpI~~VtEL 475 (534)
T KOG0358|consen 447 RAFADALEVIPYTLAENAGLNPIATVTEL 475 (534)
T ss_pred HHHHHHHhcccHhHHhhCCCChhhHHHHH
Confidence 99999999999999999999999988753
|
|
| >KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=506.52 Aligned_cols=398 Identities=24% Similarity=0.325 Sum_probs=350.1
Q ss_pred CcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCc
Q 009575 70 KDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (532)
Q Consensus 70 ~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GD 149 (532)
..+++.-.++++|++++++++|+|||+||||||+|+.|+..+|||.+||+|+++++||+ ||||+++++.|+++.||
T Consensus 23 ~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGD 98 (537)
T KOG0362|consen 23 GEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGD 98 (537)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCC
Confidence 34778889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhccc-ccCch-hHHHHHhhh-----cCChhhHhHH
Q 009575 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDS-ELADVAAVS-----AGNNYEVGNM 222 (532)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~-~v~~~-~l~~va~ts-----~~~~~~is~l 222 (532)
||+++|+|+++||+++.++|..|++|.+|+.||+.|.+.+++.|.++.. .+.+. +...+++++ +.++++++++
T Consensus 99 gtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~l 178 (537)
T KOG0362|consen 99 GTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKL 178 (537)
T ss_pred CceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999998743 22222 222444443 3568999999
Q ss_pred HHHHHHhhccCC-----ceE--EecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc--------
Q 009575 223 IAEAMSKVGRKG-----VVT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------- 287 (532)
Q Consensus 223 i~eA~~~vg~~g-----~I~--v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~-------- 287 (532)
+++|+..+.|.+ .|. +..|++++|| .++.||+|.+.. ++.+..-+.++|.++.||
T Consensus 179 Va~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~~---------eG~v~~ak~arvAvf~cP~d~~~TEt 248 (537)
T KOG0362|consen 179 VAKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRDP---------EGEVKSAKDARVAVFACPFDIAQTET 248 (537)
T ss_pred HHHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEecccc---------CCcccccccceeEEEecCCCcccccC
Confidence 999999998873 222 2599999999 899999999862 334455678899999998
Q ss_pred -----CCCHHHHHH-----------HHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHH
Q 009575 288 -----ITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLD 351 (532)
Q Consensus 288 -----I~~~~el~~-----------~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~ 351 (532)
|++++|+.+ .++.+...|++++++...+++.+|+++ |+ .+|++++.++ +.+|.
T Consensus 249 kgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nk----y~ImVlqi~S-----k~eLr 317 (537)
T KOG0362|consen 249 KGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NK----YKIMVLQINS-----KFDLR 317 (537)
T ss_pred cceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--cc----ccEEEEEecc-----HhhHH
Confidence 677777654 467788899999999999999998875 44 3789999887 89999
Q ss_pred HHHHHhCCeEeecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009575 352 DIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428 (532)
Q Consensus 352 ~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~e 428 (532)
++++..||++++ ++..+.++.+|+|++|. +++..+++|.....
T Consensus 318 rlcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~----------------------------- 363 (537)
T KOG0362|consen 318 RLCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST----------------------------- 363 (537)
T ss_pred HHHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC-----------------------------
Confidence 999999999999 58889999999999996 46777777764321
Q ss_pred HHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHH
Q 009575 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVK 507 (532)
Q Consensus 429 R~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a 507 (532)
.+.++||+|||+|+..+|+.||.++|++++.+..++++ ++||+|++|++|++.|.++++++++.+| ++++.|+
T Consensus 364 -----~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q-~Aik~fa 437 (537)
T KOG0362|consen 364 -----GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQ-LAIKKFA 437 (537)
T ss_pred -----CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcch-hHHHHHH
Confidence 13689999999999999999999999999999999998 9999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHcCCChhhhhccC
Q 009575 508 RALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 508 ~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+||+.+|++|++|||+++.+|+.++
T Consensus 438 ~Ale~~PktlaEnagl~~~evia~l 462 (537)
T KOG0362|consen 438 EALEVLPKTLAENAGLAVTEVIAKL 462 (537)
T ss_pred HHhccccHhHHHhcCCcHHHHHHHH
Confidence 9999999999999999999999764
|
|
| >KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=495.94 Aligned_cols=401 Identities=23% Similarity=0.314 Sum_probs=354.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
..+|..|..+...++++|++||||-|+|||+++.+|.+.+||||+|||+.+.++||+ +|+|++.++.||+++||||
T Consensus 18 ~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~evgDgt 93 (545)
T KOG0360|consen 18 ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEEVGDGT 93 (545)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhccccccCCc
Confidence 668888999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh-cccccCch---hHHHHHhhhcC------ChhhHhH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVEDS---ELADVAAVSAG------NNYEVGN 221 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~-~s~~v~~~---~l~~va~ts~~------~~~~is~ 221 (532)
|+|++++++||+.+.+|+..++||..|+.||+.|+..+++++.+ ++.|++.- -|.++++++++ ..++|++
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~ 173 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTE 173 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHH
Confidence 99999999999999999999999999999999999999999976 57777754 78899998864 3689999
Q ss_pred HHHHHHHhhcc---CC---------ceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccC-
Q 009575 222 MIAEAMSKVGR---KG---------VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI- 288 (532)
Q Consensus 222 li~eA~~~vg~---~g---------~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I- 288 (532)
++++|+..+.- +| .|-+-.|.+..|| .++.|+.+.....+. .|+..+.|+||+++|+.+
T Consensus 174 ~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq-------~m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 174 MVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ-------MMPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh-------ccccccccceeeeEecccc
Confidence 99999998742 23 1333599999999 699999999876653 478888999999999863
Q ss_pred ------------CCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCcc
Q 009575 289 ------------TNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (532)
Q Consensus 289 ------------~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~ 345 (532)
++++++ +..++++...|+|+|+++++|||.++.+|++.. ++||+ +.
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAVr-----R~ 314 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RC 314 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH-----HH
Confidence 555543 234778999999999999999999999999873 46554 78
Q ss_pred chhhHHHHHHHhCCeEeecCCCccc-cCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009575 346 KSQYLDDIAILTGGTVIRDEVGLAL-DKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (532)
Q Consensus 346 ~k~~L~~ia~~tG~~ii~~~~~~~l-~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~ 421 (532)
++++|++|+++||++++++.-++.- +.+.+..+|+|++|. +++|.++++.+.+-
T Consensus 315 ~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka---------------------- 372 (545)
T KOG0360|consen 315 KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA---------------------- 372 (545)
T ss_pred HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc----------------------
Confidence 8999999999999999997443332 346789999999996 57889999987542
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHH
Q 009575 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (532)
Q Consensus 422 e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (532)
..|+|++||++++.+||.+|.+|||+++++..++++ +||||||+|.+|+-+|+.++.+..++||
T Consensus 373 --------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~- 437 (545)
T KOG0360|consen 373 --------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQ- 437 (545)
T ss_pred --------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHH-
Confidence 379999999999999999999999999999999999 9999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 501 ~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+++--|+.||..+|++|+-||+.|+.+++.++
T Consensus 438 laiaefa~all~ipktla~naa~Dstelvt~l 469 (545)
T KOG0360|consen 438 LAIAEFAAALLSIPKTLAVNAAKDSTELVTKL 469 (545)
T ss_pred HHHHHHHHHHhcchHHHhhhhccccccccccc
Confidence 67888999999999999999999999998875
|
|
| >KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=469.51 Aligned_cols=390 Identities=19% Similarity=0.280 Sum_probs=353.3
Q ss_pred HHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCcccchHHH
Q 009575 77 KLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVV 156 (532)
Q Consensus 77 ~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGTTt~vv 156 (532)
.|+++.++++|.+++||||+.|-||+.++.|.+..||||..|+++|++.||. |+-+.+++.+||+++|||||||++
T Consensus 23 ~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpa----aksmiel~rtqdeevgdgttsvi~ 98 (527)
T KOG0364|consen 23 GNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGTTSVII 98 (527)
T ss_pred cchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcc----hhhHhhhhhcccccccCCceeeee
Confidence 4677899999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch---hHHHHHhhhcC------ChhhHhHHHHHHH
Q 009575 157 LAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS---ELADVAAVSAG------NNYEVGNMIAEAM 227 (532)
Q Consensus 157 La~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~---~l~~va~ts~~------~~~~is~li~eA~ 227 (532)
|++|+|.++..+++.|+||+.+++.|.+|++.++..++++++|++.+ .++++..++.+ |.+.++++..+|+
T Consensus 99 lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~av 178 (527)
T KOG0364|consen 99 LAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAV 178 (527)
T ss_pred ehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHH
Confidence 99999999999999999999999999999999999999998887744 77777776643 5788999999999
Q ss_pred HhhccC-Cc-------eE--EecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCH------
Q 009575 228 SKVGRK-GV-------VT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA------ 291 (532)
Q Consensus 228 ~~vg~~-g~-------I~--v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~------ 291 (532)
.+|+.+ |. ++ +.+|+.++|| ++++|+.+.+...||. |...++||+|+++|+++..-
T Consensus 179 k~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hpk-------mrr~IenprivLlD~~LeykkGeSqt 250 (527)
T KOG0364|consen 179 KTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQT 250 (527)
T ss_pred HHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcHH-------HHHHhhcCcEEEecCCccCCCCcccc
Confidence 999875 32 22 3699999999 8999999999999984 77789999999999986321
Q ss_pred ------------------HHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHH
Q 009575 292 ------------------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDI 353 (532)
Q Consensus 292 ------------------~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~i 353 (532)
+++..+++.+....++|||+.+++++.|.++|.++++ .++++.+|.+-.+|
T Consensus 251 nve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i-----------T~~rr~rKtDn~ri 319 (527)
T KOG0364|consen 251 NVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI-----------TAIRRLRKTDNNRI 319 (527)
T ss_pred ceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc-----------hhhhhhhccccchh
Confidence 2345678888999999999999999999999998865 56678999999999
Q ss_pred HHHhCCeEeecCCCccccCCCCCCCce-eeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009575 354 AILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNER 429 (532)
Q Consensus 354 a~~tG~~ii~~~~~~~l~~~~~~~lG~-~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR 429 (532)
+++||+++++ +++++...+.|+ |+-+++ ++++|+||..|.++
T Consensus 320 a~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~p----------------------------- 365 (527)
T KOG0364|consen 320 ARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEP----------------------------- 365 (527)
T ss_pred hhhcCceecc-----ChhhCchhccCcccceeeeeccCchhhhhhhhcCCC-----------------------------
Confidence 9999999998 589999999997 778875 67899999999876
Q ss_pred HhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHH
Q 009575 430 IAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKR 508 (532)
Q Consensus 430 ~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~ 508 (532)
+.|||++||+|...++|.+|.+.||+.+.|+.+-++ ++|||||+||.+|+.|.+.+...++.++ -.+.+++.
T Consensus 366 ------kaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVek-wPY~Ava~ 438 (527)
T KOG0364|consen 366 ------KACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEK-WPYGAVAG 438 (527)
T ss_pred ------cceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhc-cchhhhhc
Confidence 589999999999999999999999999999999999 9999999999999999998888888877 78999999
Q ss_pred HHHHHHHHHHHHcCCChhhhhc
Q 009575 509 ALCYPLKLIAKNAGVNGSVVSE 530 (532)
Q Consensus 509 AL~~~p~~La~NAG~d~~~vi~ 530 (532)
||+.+|++|++|+|.++..++.
T Consensus 439 AlEviPrtliqncGan~Ir~lT 460 (527)
T KOG0364|consen 439 ALEVIPRTLIQNCGANPIRALT 460 (527)
T ss_pred CceeccHHHHhhcCccHHHHHH
Confidence 9999999999999999987764
|
|
| >KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=441.29 Aligned_cols=395 Identities=23% Similarity=0.367 Sum_probs=347.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCcccc
Q 009575 73 YAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 152 (532)
Q Consensus 73 ~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGTT 152 (532)
.+...++.+...+.+.+++.+||+|..||+++..|++++|+||.+.+++|+++||- |-++..++..||+..|||||
T Consensus 17 aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGtt 92 (520)
T KOG0359|consen 17 AALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGTT 92 (520)
T ss_pred cceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCcc
Confidence 45667778888899999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCchhHHHHHhhhcCC------hhhHhHHHHHH
Q 009575 153 TSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGN------NYEVGNMIAEA 226 (532)
Q Consensus 153 t~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~------~~~is~li~eA 226 (532)
|+|+|.++|++++..++..|+||..|..||+.|.+.++++|++.+.+++...|..|++++++. -+.+++++++|
T Consensus 93 S~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~a 172 (520)
T KOG0359|consen 93 SVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVDS 172 (520)
T ss_pred eEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhh
Confidence 999999999999999999999999999999999999999999888888766899999999875 37788899999
Q ss_pred HHhhcc-CCceE-----E--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC---------
Q 009575 227 MSKVGR-KGVVT-----L--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--------- 289 (532)
Q Consensus 227 ~~~vg~-~g~I~-----v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~--------- 289 (532)
+..+.+ ++.|. + -+-.+..|+ .+++|.++|+|-.||. ||+.++|+.||++|..++
T Consensus 173 Vl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~Einsg 244 (520)
T KOG0359|consen 173 VLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINSG 244 (520)
T ss_pred heeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccccccccc
Confidence 998873 33221 1 244566777 6999999999999984 888899999999998653
Q ss_pred ----CHHH-----------HHHHHHHHHhcCC---C-eEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhH
Q 009575 290 ----NARD-----------LINVLEDAIRGAY---P-ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL 350 (532)
Q Consensus 290 ----~~~e-----------l~~~le~i~~~g~---~-lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L 350 (532)
+++| +.+.+.+++..+. . +||.+++|||..|+.|.++.+ + +.++-++..|
T Consensus 245 ffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gI------l-----aLRRAKRRNm 313 (520)
T KOG0359|consen 245 FFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGI------L-----ALRRAKRRNM 313 (520)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcch------H-----HHHHHhhhhH
Confidence 2221 1223455555443 2 446678999999999988743 4 4457789999
Q ss_pred HHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009575 351 DDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427 (532)
Q Consensus 351 ~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~ 427 (532)
||+..+|||..+. ++++++|+.||+|+.|+ +++++|+|+++|.++
T Consensus 314 ERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p--------------------------- 361 (520)
T KOG0359|consen 314 ERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP--------------------------- 361 (520)
T ss_pred HHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC---------------------------
Confidence 9999999999998 59999999999999997 579999999999886
Q ss_pred HHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHH
Q 009575 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIV 506 (532)
Q Consensus 428 eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~ 506 (532)
+.|||+++||+.+.+.+.|++++|++++++++++++ ++||+|++|+.+..+|+...++.+++.+ +|+++|
T Consensus 362 --------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~-~g~~af 432 (520)
T KOG0359|consen 362 --------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAY-LGVKAF 432 (520)
T ss_pred --------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhh-hhHHHH
Confidence 589999999999999999999999999999999998 9999999999999999988888889887 899999
Q ss_pred HHHHHHHHHHHHHHcCCChhhhhcc
Q 009575 507 KRALCYPLKLIAKNAGVNGSVVSEK 531 (532)
Q Consensus 507 a~AL~~~p~~La~NAG~d~~~vi~k 531 (532)
++||..+|++|++|+|+|+.+.+.+
T Consensus 433 a~all~ipk~La~nsg~D~qe~l~~ 457 (520)
T KOG0359|consen 433 ANALLVIPKTLAKNSGLDEQETLVS 457 (520)
T ss_pred HhhhhhhhHHHHHhcCCchHHHHHH
Confidence 9999999999999999999998765
|
|
| >KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-52 Score=411.53 Aligned_cols=316 Identities=26% Similarity=0.332 Sum_probs=291.6
Q ss_pred cccccccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHH
Q 009575 58 PKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVR 137 (532)
Q Consensus 58 ~~~~~~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~ 137 (532)
+|-.-.|...|| .++.+.++-+..++++++++++||+|++|++..+.|++.+|||| .|++ ++|+.
T Consensus 15 LrDQd~~~Ri~G--~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I----akLmv 79 (400)
T KOG0357|consen 15 LRDQERKDRLFG--LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI----AKLIV 79 (400)
T ss_pred eeeccCCchhhH--HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH----HHHHH
Confidence 333335677788 89999999999999999999999999999999999999999999 6787 99999
Q ss_pred HHHhccccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCchhHHHHHhhhcCChh
Q 009575 138 QAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNY 217 (532)
Q Consensus 138 e~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~~~ 217 (532)
+.++.|+.+.|||||.+++|++.+++++..++..|+||..|..||.++...+++.|.+.+.+++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------- 143 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------- 143 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------
Confidence 9999999999999999999999999999999999999999999999999999999887665532
Q ss_pred hHhHHHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHH
Q 009575 218 EVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINV 297 (532)
Q Consensus 218 ~is~li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~ 297 (532)
+..+
T Consensus 144 ----------------------------------------------------------------------------f~em 147 (400)
T KOG0357|consen 144 ----------------------------------------------------------------------------FEEM 147 (400)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 3456
Q ss_pred HHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCC
Q 009575 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEV 377 (532)
Q Consensus 298 le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~ 377 (532)
++++++.|.+++||+|++||||.++|..|.+ |..+|+.-.++|-||+.|||++++ ++++++++.
T Consensus 148 i~~vK~~ga~l~icqwgfddeanhll~~n~l-----------pavrwVGGpEiEliAiaT~grIVp-----rF~eL~~~k 211 (400)
T KOG0357|consen 148 IQQIKETGANLAICQWGFDDEANHLLLQNNL-----------PAVRWVGGPEIELIAIATGGRIVP-----RFSELTAEK 211 (400)
T ss_pred HHHHHhhCCcEEEEecccCchhhhHHhhcCC-----------CceeecCCcceEEEEeecCCeeec-----cHhhhCHhh
Confidence 7888999999999999999999999999976 777788889999999999999999 599999999
Q ss_pred CceeeEEEE-----eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHH
Q 009575 378 LGNASKVVL-----TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKE 452 (532)
Q Consensus 378 lG~~~~v~i-----~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E 452 (532)
||+|+.|+- ++|++.+++.|++. +.+||.|||.+...++|
T Consensus 212 LG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifvRg~Nkmii~E 256 (400)
T KOG0357|consen 212 LGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFVRGGNKMIIEE 256 (400)
T ss_pred ccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEEecCcceeHHH
Confidence 999999962 48899999999874 58999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcc
Q 009575 453 KKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (532)
Q Consensus 453 ~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~k 531 (532)
.||++|||||++|+.+++. +|+|||++|+.||-.+.+.+.++++.|| +++.+|++||++||..||+|+|++|.+.+++
T Consensus 257 akrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eq-ya~rafa~ale~ipmalaensgl~pi~~ls~ 335 (400)
T KOG0357|consen 257 AKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQ-YAFRAFADALESIPMALAENSGLDPIETLSD 335 (400)
T ss_pred HHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHH-HHHHHHHHHHhhcchhhhhccCCCchhhhhH
Confidence 9999999999999999998 9999999999999999999999999998 7999999999999999999999999988765
Q ss_pred C
Q 009575 532 V 532 (532)
Q Consensus 532 l 532 (532)
+
T Consensus 336 ~ 336 (400)
T KOG0357|consen 336 V 336 (400)
T ss_pred h
Confidence 3
|
|
| >cd03333 chaperonin_like chaperonin_like superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=238.80 Aligned_cols=191 Identities=37% Similarity=0.488 Sum_probs=168.8
Q ss_pred hHHHHHhhhcC-----ChhhHhHHHHHHHHhhcc------CCceEE--ecCCCccceeeEEeeeEEeecccCCccccCcc
Q 009575 204 ELADVAAVSAG-----NNYEVGNMIAEAMSKVGR------KGVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSE 270 (532)
Q Consensus 204 ~l~~va~ts~~-----~~~~is~li~eA~~~vg~------~g~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~ 270 (532)
.|.++|+|+++ +++.+++++++|+..+++ .+.|.+ .+|++++|| ++++|++|+++|.+|+
T Consensus 3 ~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~------ 75 (209)
T cd03333 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY------ 75 (209)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC------
Confidence 47889999998 899999999999999988 345554 699999999 8999999999999986
Q ss_pred cCeeeccceeEeeecccCCCHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhH
Q 009575 271 KMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL 350 (532)
Q Consensus 271 ~~~~~~~npkIll~d~~I~~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L 350 (532)
|+.+++||+|++++++|+. +|+++++|+++++++|..+ +|+||+. +++++|
T Consensus 76 -m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~l 126 (209)
T cd03333 76 -MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKEDL 126 (209)
T ss_pred -CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHHH
Confidence 5778999999999999887 8888888999999999885 5688874 668999
Q ss_pred HHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009575 351 DDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427 (532)
Q Consensus 351 ~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~ 427 (532)
+|||.+|||+++++ +++++++.||+|+++++. ++.+++|.+|..
T Consensus 127 ~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~---------------------------- 173 (209)
T cd03333 127 ERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG---------------------------- 173 (209)
T ss_pred HHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCC----------------------------
Confidence 99999999999994 788889999999999874 456888887754
Q ss_pred HHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 009575 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470 (532)
Q Consensus 428 eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~ 470 (532)
+..|||+|||+|+.+++|.||+++||++++++++++
T Consensus 174 -------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 174 -------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 368999999999999999999999999999999874
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. |
| >cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=230.36 Aligned_cols=199 Identities=20% Similarity=0.189 Sum_probs=168.6
Q ss_pred ChhhHhHHHHHHHHhhccC---C-------ceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009575 215 NNYEVGNMIAEAMSKVGRK---G-------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (532)
Q Consensus 215 ~~~~is~li~eA~~~vg~~---g-------~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIl 282 (532)
|.++|++++++|+..+.++ + .|++ .+|++++|| ++++|++|++++.++ .||.+++||+|+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 5789999999999998632 1 2443 699999999 899999999998775 478889999999
Q ss_pred eecccCCCH------H-----------HHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCcc
Q 009575 283 LVDKKITNA------R-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (532)
Q Consensus 283 l~d~~I~~~------~-----------el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~ 345 (532)
+++++|+.. . .+.+.+++++..|+++||++++|++.++++|.++ +|++|+ ++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~-----~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVL-----NV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEE-----ec
Confidence 999987432 1 2456789999999999999999999999999887 456666 56
Q ss_pred chhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eC-----ceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009575 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TK-----DTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (532)
Q Consensus 346 ~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~-----~~~~~i~g~~~~~~i~~r~~~i~~~l~~~ 417 (532)
++++|++||++|||+++++ -.+.++++.||+|+.|++ ++ +.+++|.+|+.+
T Consensus 160 ~~~dl~rIa~~tGa~ii~~----i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~----------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIISS----MDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE----------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEecC----hhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-----------------
Confidence 7899999999999999994 034788899999999985 33 589999988753
Q ss_pred hhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009575 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 471 (532)
Q Consensus 418 ~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g 471 (532)
..+||+|||+|+..++|.||.++||+++++++..++
T Consensus 219 ------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 ------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred ------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 589999999999999999999999999999998875
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. |
| >KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-11 Score=138.02 Aligned_cols=208 Identities=18% Similarity=0.203 Sum_probs=167.8
Q ss_pred ChhhHhHHHHHHHHhhccC----------Cc--eEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009575 215 NNYEVGNMIAEAMSKVGRK----------GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (532)
Q Consensus 215 ~~~~is~li~eA~~~vg~~----------g~--I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIl 282 (532)
|.+.+..|+.+|...+.++ +. ++.+.||+..|| +++.|++|.+...+ +.|..++++|+|+
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~-------k~M~~~~e~pril 404 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAH-------KRMATKYENPRIL 404 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhh-------hhhhhhccCCceE
Confidence 4678999999999998875 23 444789999999 89999999997665 4578889999999
Q ss_pred eecccCC---------CHH--------HHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCcc
Q 009575 283 LVDKKIT---------NAR--------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (532)
Q Consensus 283 l~d~~I~---------~~~--------el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~ 345 (532)
++.++|. +++ .+...+.++...+.+++++.++|++.|..+|... |+.-+. ++
T Consensus 405 ll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I~lvl--------nv 473 (1598)
T KOG0230|consen 405 LLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GISLVL--------NV 473 (1598)
T ss_pred EEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---CeEEEE--------ec
Confidence 9988642 222 2455677888889999999999999999998764 443333 66
Q ss_pred chhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe--------CceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009575 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT--------KDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (532)
Q Consensus 346 ~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~--------~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~ 417 (532)
++..|+||+++||+.|++ +++.++...||+|..+++. .+.++||+||..+
T Consensus 474 K~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~----------------- 531 (1598)
T KOG0230|consen 474 KRSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP----------------- 531 (1598)
T ss_pred cHHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC-----------------
Confidence 789999999999999998 5888999999999999863 2457788888764
Q ss_pred hhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc-CccccCchhhh
Q 009575 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE-GIVVGGGCTLL 481 (532)
Q Consensus 418 ~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~-gvVpGGGa~el 481 (532)
..|||++||.+..++.+.|+-++-++-|+.+..=+ .++.--|+...
T Consensus 532 ------------------lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 532 ------------------LGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred ------------------CCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 36899999999999999999999999998776444 47777776544
|
|
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00037 Score=77.10 Aligned_cols=88 Identities=23% Similarity=0.242 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCC-eEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhH-HHHHHHhCCeEeecCCCcccc
Q 009575 294 LINVLEDAIRGAYP-ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL-DDIAILTGGTVIRDEVGLALD 371 (532)
Q Consensus 294 l~~~le~i~~~g~~-lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L-~~ia~~tG~~ii~~~~~~~l~ 371 (532)
+..+++.+.+.|.+ +++++++|+|.++++|..+. |. ..|++.++++ ++|+.+|||++++ .++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~------Il-----t~~~v~~~dl~~~l~~~~ga~~v~-----~~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIA------IL-----TGRRVKKEDLGERLAKLGGAKIVS-----VLK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhc------ce-----ecceecchhhHHHHHHccCceEEe-----ecc
Confidence 34567788899999 88999999999999998874 34 4456778899 7999999999999 588
Q ss_pred CCCCCCCce--eeEEEE---eCceEEEEcCC
Q 009575 372 KVGKEVLGN--ASKVVL---TKDTTTIVGDG 397 (532)
Q Consensus 372 ~~~~~~lG~--~~~v~i---~~~~~~~i~g~ 397 (532)
++++..+|. |+.|+. ++++++++.++
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~ 353 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQER 353 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhh
Confidence 999999999 999974 34455555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 532 | ||||
| 1we3_A | 543 | Crystal Structure Of The Chaperonin Complex Cpn60CP | 1e-133 | ||
| 3c9v_A | 526 | C7 Symmetrized Structure Of Unliganded Groel At 4.7 | 1e-133 | ||
| 1aon_A | 547 | Crystal Structure Of The Asymmetric Chaperonin Comp | 1e-133 | ||
| 2eu1_A | 548 | Crystal Structure Of The Chaperonin Groel-E461k Len | 1e-133 | ||
| 1pcq_A | 524 | Crystal Structure Of Groel-Groes Length = 524 | 1e-132 | ||
| 2yey_A | 524 | Crystal Structure Of The Allosteric-Defective Chape | 1e-132 | ||
| 1sx3_A | 525 | Groel14-(Atpgammas)14 Length = 525 | 1e-132 | ||
| 1ss8_A | 524 | Groel Length = 524 | 1e-132 | ||
| 1gr5_A | 547 | Solution Structure Of Apo Groel By Cryo-Electron Mi | 1e-132 | ||
| 4aaq_A | 548 | Atp-Triggered Molecular Mechanics Of The Chaperonin | 1e-132 | ||
| 1kp8_A | 547 | Structural Basis For Groel-Assisted Protein Folding | 1e-131 | ||
| 1grl_A | 548 | The Crystal Structure Of The Bacterial Chaperonin G | 1e-131 | ||
| 1j4z_A | 547 | Structural And Mechanistic Basis For Allostery In T | 1e-131 | ||
| 3cau_A | 526 | D7 Symmetrized Structure Of Unliganded Groel At 4.2 | 1e-131 | ||
| 1oel_A | 547 | Conformational Variability In The Refined Structure | 1e-131 | ||
| 1iok_A | 545 | Crystal Structure Of Chaperonin-60 From Paracoccus | 1e-129 | ||
| 3rtk_A | 546 | Crystal Structure Of Cpn60.2 From Mycobacterium Tub | 1e-129 | ||
| 1sjp_A | 504 | Mycobacterium Tuberculosis Chaperonin60.2 Length = | 1e-117 | ||
| 1la1_A | 192 | Gro-El Fragment (Apical Domain) Comprising Residues | 4e-59 | ||
| 1fy9_A | 193 | Crystal Structure Of The Hexa-Substituted Mutant Of | 2e-57 | ||
| 1kid_A | 203 | Groel (Hsp60 Class) Fragment (Apical Domain) Compri | 6e-57 | ||
| 1fya_A | 193 | Crystal Structure Of The Hexa-Substituted Mutant Of | 6e-57 | ||
| 3osx_A | 201 | Crystal Structure Of Apical Domain Of Insecticidal | 2e-56 | ||
| 1jon_A | 155 | Groel (Hsp60 Class) Fragment Comprising Residues 19 | 2e-44 | ||
| 1dk7_A | 146 | Crystal Structure Of An Isolated Apical Domain Of G | 8e-44 | ||
| 3m6c_A | 194 | Crystal Structure Of Mycobacterium Tuberculosis Gro | 4e-43 | ||
| 1srv_A | 145 | Thermus Thermophilus Groel (Hsp60 Class) Fragment ( | 1e-41 | ||
| 3p9d_E | 562 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-12 | ||
| 3iyg_Z | 517 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 6e-11 | ||
| 1a6d_A | 545 | Thermosome From T. Acidophilum Length = 545 | 2e-10 | ||
| 1a6d_B | 543 | Thermosome From T. Acidophilum Length = 543 | 3e-10 | ||
| 3iyg_D | 518 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 4e-10 | ||
| 1q3r_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 7e-10 | ||
| 3izh_A | 513 | Mm-Cpn D386a With Atp Length = 513 | 1e-09 | ||
| 3los_A | 543 | Atomic Model Of Mm-Cpn In The Closed State Length = | 1e-09 | ||
| 3rus_A | 543 | Crystal Structure Of Cpn-Rls In Complex With Adp Fr | 1e-09 | ||
| 3izi_A | 513 | Mm-Cpn Rls With Atp Length = 513 | 1e-09 | ||
| 3izk_A | 491 | Mm-Cpn Rls Deltalid With Atp Length = 491 | 1e-09 | ||
| 3j02_A | 491 | Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun | 1e-09 | ||
| 3izn_A | 491 | Mm-Cpn Deltalid With Atp Length = 491 | 1e-09 | ||
| 3iyf_A | 521 | Atomic Model Of The Lidless Mm-Cpn In The Open Stat | 1e-09 | ||
| 3p9d_D | 528 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-09 | ||
| 1q2v_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 6e-09 | ||
| 1q3s_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 3e-08 | ||
| 3iyg_E | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-08 | ||
| 3ko1_A | 553 | Cystal Structure Of Thermosome From Acidianus Tengc | 1e-07 | ||
| 3iyg_B | 513 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 1e-07 | ||
| 3p9d_F | 546 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-07 | ||
| 3p9d_C | 590 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 3e-07 | ||
| 3iyg_G | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 6e-07 | ||
| 3p9d_B | 527 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 9e-07 | ||
| 3iyg_H | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-06 | ||
| 3p9d_H | 568 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 7e-06 | ||
| 3p9d_G | 550 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 1e-05 | ||
| 3iyg_A | 529 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 1e-05 | ||
| 3aq1_B | 500 | Open State Monomer Of A Group Ii Chaperonin From Me | 3e-04 | ||
| 3p9d_A | 559 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 3e-04 |
| >pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 | Back alignment and structure |
|
| >pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 | Back alignment and structure |
|
| >pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 | Back alignment and structure |
|
| >pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 | Back alignment and structure |
|
| >pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 | Back alignment and structure |
|
| >pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 | Back alignment and structure |
|
| >pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 | Back alignment and structure |
|
| >pdb|1SS8|A Chain A, Groel Length = 524 | Back alignment and structure |
|
| >pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 | Back alignment and structure |
|
| >pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 | Back alignment and structure |
|
| >pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 | Back alignment and structure |
|
| >pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 | Back alignment and structure |
|
| >pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 | Back alignment and structure |
|
| >pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 | Back alignment and structure |
|
| >pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 | Back alignment and structure |
|
| >pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 | Back alignment and structure |
|
| >pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 | Back alignment and structure |
|
| >pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 | Back alignment and structure |
|
| >pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 | Back alignment and structure |
|
| >pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 | Back alignment and structure |
|
| >pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 | Back alignment and structure |
|
| >pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 | Back alignment and structure |
|
| >pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 | Back alignment and structure |
|
| >pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 | Back alignment and structure |
|
| >pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 | Back alignment and structure |
|
| >pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 | Back alignment and structure |
|
| >pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 | Back alignment and structure |
|
| >pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 | Back alignment and structure |
|
| >pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 | Back alignment and structure |
|
| >pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 | Back alignment and structure |
|
| >pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 | Back alignment and structure |
|
| >pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 | Back alignment and structure |
|
| >pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 | Back alignment and structure |
|
| >pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 | Back alignment and structure |
|
| >pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 | Back alignment and structure |
|
| >pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 | Back alignment and structure |
|
| >pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 | Back alignment and structure |
|
| >pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 | Back alignment and structure |
|
| >pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 | Back alignment and structure |
|
| >pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 | Back alignment and structure |
|
| >pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 | Back alignment and structure |
|
| >pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 | Back alignment and structure |
|
| >pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 | Back alignment and structure |
|
| >pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 | Back alignment and structure |
|
| >pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 | Back alignment and structure |
|
| >pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 | Back alignment and structure |
|
| >pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 | Back alignment and structure |
|
| >pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 | Back alignment and structure |
|
| >pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 | Back alignment and structure |
|
| >pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 | Back alignment and structure |
|---|
Score = 689 bits (1781), Expect = 0.0
Identities = 262/472 (55%), Positives = 340/472 (72%), Gaps = 5/472 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F D A K+ GVN LAD V VTLGPKGRNVVL+ +GAP I DGV+VA+E
Sbjct: 1 AAKDVKFGND--AGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVARE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RG
Sbjct: 59 IELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K V ELK +S DS +A V +SA ++ VG +IAEAM KVG++GV+T+E+
Sbjct: 119 IDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVED 178
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
G ++ L VVEGMQFDRGY+SPYF+ E AVE E+ +LL DKKI+N R+++ VLE
Sbjct: 179 GTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEA 238
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+ L DIA LTGGT
Sbjct: 239 VAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGT 298
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +E+G+ L+K E LG A +VV+ KDTTTI+ + A+ RVAQIR IE A D
Sbjct: 299 VISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSD 358
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG+V GGG L
Sbjct: 359 YDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVAL 418
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
+R++SK+ ++ N ++ VG + RA+ PL+ I N G SVV+ V
Sbjct: 419 IRVASKLADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTV 468
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 | Back alignment and structure |
|---|
Score = 685 bits (1771), Expect = 0.0
Identities = 263/471 (55%), Positives = 350/471 (74%), Gaps = 5/471 (1%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK L F++ A + L+ GVN +A+ V VTLGP+GRNVVLE K+G+P I DGVTVAKEV
Sbjct: 2 AKILVFDEA--ARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEV 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELED +ENIGA+L+++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGI
Sbjct: 60 ELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EK +A V ++K ++ VED + +VA +SA N+ EVG +IA+AM KVG++G++T+EE
Sbjct: 120 EKAVEAAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEES 178
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS E L VEG QFD+GYISPYFVT+ E M E+ +L+V+KK++N R+L+ +LE
Sbjct: 179 KSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQV 238
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
+ P+LIIAED+E EALATLVVNKLRG L +AA+KAPGFG+R+ + L DIA +TGGTV
Sbjct: 239 AQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTV 298
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I +E+G L+ +LG A +V +TKD TTIVG ++ + R+ I+ +E + +Y
Sbjct: 299 ISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEY 358
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
REKL ER+AKL+GGVAVI+VGA TETELKEKK R EDALNAT+AAVEEGIV GGG TLL
Sbjct: 359 AREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLL 418
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
R S V+ + + L +E GA IV+RAL P + IA+NAG GSV+ +++
Sbjct: 419 RAISAVEELIKKL-EGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQI 468
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 | Back alignment and structure |
|---|
Score = 685 bits (1771), Expect = 0.0
Identities = 252/472 (53%), Positives = 345/472 (73%), Gaps = 5/472 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++ FN D A ++ GVN LAD V VTLGPKGRNVV++ +GAP+I DGV+VAKE
Sbjct: 2 AAKEVKFNSD--ARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+EL D EN+GA++VR+ A++TND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 60 IELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ + +V +K ++ V DS E+A V +SA +G IAEAM +VG +GV+T+EE
Sbjct: 120 IDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K E + VVEGMQFDRGY+SPYFVT+++KM E E+ +LL +KK+++ + ++ +LE
Sbjct: 180 NKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLES 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
I+ P+LI+AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +++G+ L+ V ++LG A KV + KD TTIV + + RV+QIR IE D
Sbjct: 300 VISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VG TE E+KE+K RV+DALNAT+AAV+EGIVVGGG L
Sbjct: 360 YDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
++ + ++ + N ++ G I++RAL P++ IA+NAGV+G+VV+ KV
Sbjct: 420 VQGAKVLEGLSG--ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKV 469
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 | Back alignment and structure |
|---|
Score = 682 bits (1762), Expect = 0.0
Identities = 263/471 (55%), Positives = 344/471 (73%), Gaps = 7/471 (1%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + ++++ A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+
Sbjct: 2 AKTIAYDEE--ARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELEDP E IGA+LV++ A KT+D+AGDGTTT+ VLAQ L+ EG++ VAAGANP+ + RGI
Sbjct: 60 ELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EK + + L + +KEVE ++A AA+SAG+ +G++IAEAM KVG +GV+T+EE
Sbjct: 120 EKAVEKVTETLLKGAKEVETKEQIAATAAISAGDQ-SIGDLIAEAMDKVGNEGVITVEES 178
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
+ L + EGM+FD+GYIS YFVTD E+ E+ +LLV K++ +DL+ +LE
Sbjct: 179 NTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKV 238
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
I P+LIIAED+E EAL+TLVVNK+RG K A+KAPGFG+R+ L D+AILTGG V
Sbjct: 239 IGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQV 298
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I +EVGL L+ +LG A KVV+TKD TTIV DA++ RVAQIR IEN++ DY
Sbjct: 299 ISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDY 358
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+REKL ER+AKL+GGVAVI+ GA TE ELKE+K R+EDA+ KAAVEEGIV GGG TLL
Sbjct: 359 DREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLL 418
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532
+ + +D +K L+ D E GA+IVK AL PLK IA N+G+ VV+EKV
Sbjct: 419 QAAPTLDELK--LEGD-EATGANIVKVALEAPLKQIAFNSGLEPGVVAEKV 466
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 | Back alignment and structure |
|---|
Score = 288 bits (740), Expect = 6e-96
Identities = 108/197 (54%), Positives = 143/197 (72%)
Query: 243 SAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302
S + + EGMQFDRGY+SPYF+ E +VE EN +LLVDKKI+N R+L+ VLE
Sbjct: 4 SHHHHHHGSEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVA 63
Query: 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVI 362
+ + P++IIAED+E EALATLVVN +RG +K+A++KAPGFG+R+ L DIA LT GTVI
Sbjct: 64 KASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVI 123
Query: 363 RDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422
+E+GL L+K E LG A +VV+ KDTTTI+ + A++ RV QIR IE + DY+
Sbjct: 124 SEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDYD 183
Query: 423 REKLNERIAKLSGGVAV 439
REKL ER+AKL+GGV +
Sbjct: 184 REKLQERVAKLAGGVKL 200
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 7e-95
Identities = 92/193 (47%), Positives = 133/193 (68%)
Query: 248 LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYP 307
L EG+ FD+G++S YFVTD + E+ +LL KI++ DL+ +LE P
Sbjct: 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKP 61
Query: 308 ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367
+LI+AED+E EALATLVVN +R LK A+K P FG+R+ +L+D+A++TGG V+ + G
Sbjct: 62 LLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAG 121
Query: 368 LALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427
+ L +VG EVLG+A +VV++KD T IV G T +AV+ R +R I+ ++ D++REKL
Sbjct: 122 MVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKLG 181
Query: 428 ERIAKLSGGVAVI 440
ER+AKL+GGVAVI
Sbjct: 182 ERLAKLAGGVAVI 194
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 3e-69
Identities = 81/143 (56%), Positives = 107/143 (74%)
Query: 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIA 312
G QFD+GYISPYFVT+ E M E+ +L+V+KK++N R+L+ +LE + P+LIIA
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 313 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDK 372
ED+E EALATLVVNKLRG L +AA+KAPGFG+R+ + L DIA +TGGTVI +E+G L+
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 373 VGKEVLGNASKVVLTKDTTTIVG 395
+LG A +V +TKD TTIVG
Sbjct: 121 ATLSMLGRAERVRITKDETTIVG 143
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 89/523 (17%), Positives = 191/523 (36%), Gaps = 117/523 (22%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD++ LGPK +L G + NDG + +E+++ P AK + + + +
Sbjct: 31 VADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPA----AKSMLELSRTQD 86
Query: 145 DLAGDGTTTSVVLAQGLIAEGV-KVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-- 201
+ GDGTTT ++LA ++A+ ++ +PV+I + ++K + +KQ+SK V+
Sbjct: 87 EEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVE 146
Query: 202 -DSELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENML------ 248
D+ + + + ++ + +A+ V + T+E + E +
Sbjct: 147 NDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRV 206
Query: 249 -----------YVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK----- 287
V++G+ ++ + P KM+ EN +++L+D KK
Sbjct: 207 EKIPGGDVLDSRVLKGVLLNKDVVHP-------KMSRHIENPRVVLLDCPLEYKKGESQT 259
Query: 288 ---ITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA----- 339
I D + I IE+E + + +I A++
Sbjct: 260 NIEIEKEEDW-----NRIL----------QIEEEQVQLMC-------EQILAVRPTLVIT 297
Query: 340 -PGFGERKSQYLDD----------------IAILTGGTVI-------RDEVGLALDKVGK 375
G + YL IA +TG T++ +VG
Sbjct: 298 EKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKV 357
Query: 376 EVLGNASKVVLTK----DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIA 431
E++G+ L + + + KR + + +A +++ + +
Sbjct: 358 EMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALG 417
Query: 432 KLSGGVAVIQVGAQTETELKEKKLR---------VEDALNATKAAVEEG-IVVGGGCTLL 481
+ T + + ++DA+ + + + GGG T +
Sbjct: 418 SGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEM 477
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVN 524
+S K+ + L+ ++ V A+ + + +NAG +
Sbjct: 478 AVSVKLAEKAKQLEG-IQQWPYQAVADAMECIPRTLIQNAGGD 519
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 6e-16
Identities = 76/456 (16%), Positives = 152/456 (33%), Gaps = 118/456 (25%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+ + + TLGP G ++++ + I NDG T+ K +++ P AK + + +
Sbjct: 36 VQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPA----AKTLVDISRAQD 91
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
GDGTT+ +LA L+ E + G + LI +G K V ++ +++ ++ +
Sbjct: 92 AEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEK 151
Query: 205 LAD------VAA------VSAGNNYEVGNMIAEAMSKVGRKGV------VTLEEGKSAEN 246
+ A + N M +A+ + R + + G + E
Sbjct: 152 SSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEE 211
Query: 247 MLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD------KKITNARDLINVLED 300
+ G+ F + + F E+ ++ N K+L ++ + NA + +ED
Sbjct: 212 S-LFINGVAFKKTFSYAGF----EQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVED 266
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD-- 352
D E + + + ++ A G+ +Q+ D
Sbjct: 267 --------YQAIVDAEWQLIFEKLR-------QVEETGANIVLSKLPIGDLATQFFADRN 311
Query: 353 --------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGS 398
+ GG++ + E LG +
Sbjct: 312 IFCAGRVSADDMNRVIQAVGGSIQST-----TSDIKPEHLGTCALF-------------- 352
Query: 399 TQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELKEK 453
E + +ER G ++ G E + E
Sbjct: 353 ----------------------EEMQIGSERYNLFQGCPQAKTCTLLLRGG-AEQVIAEV 389
Query: 454 KLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
+ + DA+ K A++ IV GGG T + +S +
Sbjct: 390 ERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLR 425
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 2e-15
Identities = 75/468 (16%), Positives = 144/468 (30%), Gaps = 134/468 (28%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
LA GP G N ++ + + ND T+ +E+E++ P AK++ A+
Sbjct: 23 LAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPA----AKMIVMASHMQE 78
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS- 203
GDGT +V A L+ +++ G + + G E K L + +
Sbjct: 79 QEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNL 138
Query: 204 ----ELADVAAVS-----AGNNYEVGNMIAEAMSKVGRK-GVVTLE-------EGKSAEN 246
E++ + S GN + +IA+A + G ++ G +
Sbjct: 139 RDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHS 198
Query: 247 MLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITNARD 293
V+ GM F + ++E ++ K+ + I +A +
Sbjct: 199 S-SVLHGMVFKK---------ETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEE 248
Query: 294 LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKS 347
L+N E+ + V IA A +
Sbjct: 249 LMNFS---------------KGEENLMDAQV-------KAIADTGANVVVTGGRVADMAL 286
Query: 348 QYLDD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTK--- 388
Y + + G T + L+ E +G+ V L++
Sbjct: 287 HYANKYNIMLVRLNSKWDLRRLCKTVGATALPR-----LNPPVLEEMGHCDSVYLSEVGD 341
Query: 389 -DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 447
+ T++ L G T+
Sbjct: 342 TQVVVFKHEKEDGAIS--------TIV------------------LRGS---------TD 366
Query: 448 TELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
+ + + V+D +N K + +V GGG T + L+ ++ + ET
Sbjct: 367 NLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETC 414
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 5e-15
Identities = 74/391 (18%), Positives = 142/391 (36%), Gaps = 106/391 (27%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
L + ++GP GRN ++ + G I ND T+ +E+++ P K++ A +
Sbjct: 38 LHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPA----VKVLVMATEQQK 93
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMS----KEV 200
GDGT ++LA L+ K+++ G + V I +G K + EL +M +
Sbjct: 94 IDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDK 153
Query: 201 EDSE-LADVAAVS-----AGNNYEVGNMIAEAMSKV-------GRKGVVTLE-------E 240
D L + G+ + +++EA+S V G ++
Sbjct: 154 NDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIM 213
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK-------- 287
G S N V++GM F+R K E + K+ +
Sbjct: 214 GGSLSNS-TVIKGMVFNREPEG------HVKSLSEDKKHKVAVFTCPLDIANTETKGTVL 266
Query: 288 ITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PG 341
+ NA+++++ E++ + ++ +IA + G
Sbjct: 267 LHNAQEMLDFS---------------KGEEKQIDAMM-------KEIADMGVECIVAGAG 304
Query: 342 FGERKSQYLDD----------------IAILTGGTVI-------RDEVGLALDKVGKEVL 378
GE YL+ + + G T + +E+GL + V +
Sbjct: 305 VGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLV-ETVKTMEI 363
Query: 379 GNASKVVLTKD------TTTIVGDGSTQDAV 403
G V ++ T+TI+ G+TQ+ +
Sbjct: 364 GGDRVTVFKQEQGEISRTSTIILRGATQNNL 394
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 6e-15
Identities = 93/462 (20%), Positives = 169/462 (36%), Gaps = 121/462 (26%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD V TLGPKG + +L G I NDG T+ KE+++E P AK++ + + +
Sbjct: 34 IADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT----AKMIVEVSKAQD 89
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
GDGTTT+VVL+ L+ + ++ G +P +I+ G + +++++ D
Sbjct: 90 TAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDA 149
Query: 205 -LADVAA------VSAGNNYEVGNMIAEAMSKV----GRKGVVTLE-------EGKSAEN 246
L +A + +N + +++ +A++ V K +V G S +
Sbjct: 150 TLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVND 209
Query: 247 MLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINVLED 300
+ G+ D+ + KM +N K+ L+D KK A+ I+
Sbjct: 210 T-QFISGIVIDKEKVHS-------KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSK 261
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD-- 352
+ + E +V KI A G + YL
Sbjct: 262 --------IQDFLNQETNTFKQMVE-------KIKKSGANVVLCQKGIDDVAQHYLAKEG 306
Query: 353 --------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGS 398
+A TG ++ D LD + VLG A V
Sbjct: 307 IYAVRRVKKSDMEKLAKATGAKIVTD-----LDDLTPSVLGEAETV-------------- 347
Query: 399 TQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELKEK 453
ER+ ++R+ + G V+++ G T+ + E
Sbjct: 348 ----------------------EERKIGDDRMTFVMGCKNPKAVSILIRGG-TDHVVSEV 384
Query: 454 KLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
+ + DA+ E+G + GGG L+ ++ ++
Sbjct: 385 ERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSV 426
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 28/217 (12%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
L D++ LGPKG +L S G K+ DG + E++++ P A L+ + A +
Sbjct: 22 LQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPT----ASLIAKVATAQD 77
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--D 202
D+ GDGTT++V++ L+ + ++ G +P +IT G E + + L+Q+ E
Sbjct: 78 DITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDR 137
Query: 203 SELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGV------VTLEE--GKSAENML 248
L DVA V A + + +++ + ++ V + E KS +
Sbjct: 138 ETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDT- 196
Query: 249 YVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD 285
++ G+ D G P M E+ +L +
Sbjct: 197 SLIRGLVLDHGARHP-------DMKKRVEDAYILTCN 226
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-14
Identities = 75/471 (15%), Positives = 167/471 (35%), Gaps = 135/471 (28%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD++ LGPK +L G + NDG + +E++++ P AK + + + +
Sbjct: 21 IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPA----AKSMIEISRTQD 76
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
+ GDGTT+ ++LA +++ + +P ++ K ++S LK++S V+
Sbjct: 77 EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSN 136
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKV----GRKGVVTLEE--------GKS 243
+ ++ V + + N+ +A+ V + + +++ G
Sbjct: 137 RDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGI 196
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITN 290
E+ V+ G+ ++ P +M +N +++L+D KK IT
Sbjct: 197 IEDSC-VLRGVMINKDVTHP-------RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITR 248
Query: 291 ARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGE 344
D I +E+E + L I LK G +
Sbjct: 249 EEDF-----TRIL----------QMEEEYIQQLC-------EDIIQLKPDVVITEKGISD 286
Query: 345 RKSQYLDD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVV--- 385
YL IA G ++ +++ +E +G + ++
Sbjct: 287 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSR-----PEELREEDVGTGAGLLEIK 341
Query: 386 -LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGA 444
+ + T + + A T++ L G
Sbjct: 342 KIGDEYFTFITECKDPKAC--------TIL------------------LRGA-------- 367
Query: 445 QTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
++ L E + ++DA+ + + + +V GGG + + ++ + + +
Sbjct: 368 -SKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAM 417
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 5e-14
Identities = 84/458 (18%), Positives = 174/458 (37%), Gaps = 123/458 (26%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+++ V +LGP+G + +L G I NDGVT+ KE+++E P AK++ + + +
Sbjct: 33 ISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQD 88
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
GDGTTT+V++A GL+ + ++ +P +I+ G S+ + ++S ++
Sbjct: 89 SFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADE 148
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKV----GRKGVVTLE-------EGKSA 244
+ L +A ++ ++ + EA+ V K V + +G +
Sbjct: 149 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAI 208
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINVL 298
++ ++ G+ D+ + P M ++ K+ L+D KK + I
Sbjct: 209 DDT-QLINGIIVDKEKVHP-------GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDP 260
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD 352
+ E+ L +V KI ++ A G + YL
Sbjct: 261 SM--------IQKFLAQEENMLREMVD-------KIKSVGANVVITQKGIDDMAQHYLSR 305
Query: 353 ----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396
+A TG +++ +D++ LG A +V
Sbjct: 306 AGIYAVRRVKKSDMDKLAKATGASIVST-----IDEISSSDLGTAERV------------ 348
Query: 397 GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELK 451
+ + + + ++G V+++ G TE +
Sbjct: 349 ------------------------EQVKVGEDYMTFVTGCKNPKAVSILVRGE-TEHVVD 383
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E + + D+L+ +A+E+G GGG T ++ ++
Sbjct: 384 EMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLR 421
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 6e-14
Identities = 84/458 (18%), Positives = 158/458 (34%), Gaps = 122/458 (26%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+ V TLGP+G + ++ G I NDG T+ K +++ P AK + A +
Sbjct: 23 IAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPA----AKTLVDIAKSQD 78
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS- 203
GDGTT+ +LA + + V G +P +I R ++ V+++K+++ V+
Sbjct: 79 AEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKED 138
Query: 204 ------ELADVAAVS------AGNNYEVGNMIAEAMSKVGRKGVVTLE-------EGKSA 244
L A + + M+ +A+ + ++ L+ +G +
Sbjct: 139 KVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML--DDLLQLKMIGIKKVQGGAL 196
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD------KKITNARDLINVL 298
E +V G+ F + + F E +Y N + L++ + NA ++ +
Sbjct: 197 EES-QLVAGVAFKKTFSYAGF----EMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTV 251
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD 352
ED D E L + KI A G+ +QY D
Sbjct: 252 ED--------YQAIVDAEWNILYDKLE-------KIHHSGAKVVLSKLPIGDVATQYFAD 296
Query: 353 ----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396
+ GG++ ++ + +VLG
Sbjct: 297 RDMFCAGRVPEEDLKRTMMACGGSIQTS-----VNALSSDVLGRCQVF------------ 339
Query: 397 GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETELK 451
E + ER +G +I G E ++
Sbjct: 340 ------------------------EETQIGGERYNFFTGCPKAKTCTIILRGG-AEQFME 374
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E + + DA+ + A++ +V GGG + LS +
Sbjct: 375 ETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR 412
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 6e-14
Identities = 81/461 (17%), Positives = 177/461 (38%), Gaps = 110/461 (23%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD + +LGPKG + ++++ G I NDG T+ K++ + PV A+++ + +A +
Sbjct: 31 VADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPV----ARMLVEVSAAQD 86
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
AGDGTT+ V+L L+ +++ G +P +I + +K V L +M +V
Sbjct: 87 SEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSD 146
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEE---------GKSAEN 246
+L A+ + + + + + +++ K+ + ++ G + ++
Sbjct: 147 REQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDD 206
Query: 247 MLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITNARD 293
+++G+ + I E K+ L+ K + + R
Sbjct: 207 T-EMIDGVVLTQTAIKS------AGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQ 259
Query: 294 LINVLE----------DAIRGAYP-ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGF 342
+ +L+ I+ A +L+I + I ++A+ L L I +K
Sbjct: 260 MDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDL-ALHFLSKLNIMVVKDIER 318
Query: 343 GERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA 402
E ++ ++ G I D ++ ++ L +A V
Sbjct: 319 EE-----IEFLSKGLGCKPIAD-----IELFTEDRLDSADLV------------------ 350
Query: 403 VSKRVAQIRTLIENAEQDYEREKLNERIAKLSG--------GVAVIQVGAQTETELKEKK 454
E + +I +++G V+V+ GA + E +
Sbjct: 351 ------------------EEIDSDGSKIVRVTGIRNNNARPTVSVVIRGA-NNMIIDETE 391
Query: 455 LRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
+ DAL + V+E ++ GGG + +S ++ ++
Sbjct: 392 RSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSM 432
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 7e-14
Identities = 90/458 (19%), Positives = 173/458 (37%), Gaps = 123/458 (26%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+ + + T GP+G + +L G I NDG T+ +++L+ P AKL+ Q A +
Sbjct: 42 VEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPA----AKLLVQIAKGQD 97
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
+ DGT T+V+ + L+ + ++ +P +I G +K + + ++++++ V
Sbjct: 98 EETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSIND 157
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKV----GRKGVVTLE-------EGKSA 244
L +A AG + +++ +A+++V G K V L+ G S
Sbjct: 158 TDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSI 217
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINVL 298
+ +V G+ D+ + P M EN K+ L+D +K +A IN
Sbjct: 218 NDT-QLVYGIVVDKEVVHP-------GMPKRLENAKIALIDASLEVEKPELDAEIRINDP 269
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD 352
+ D E+ + V KI A A G E YL
Sbjct: 270 TQ--------MQKFLDEEENLIKEKVD-------KILATGANVIICQKGIDEVAQSYLAK 314
Query: 353 ----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396
+A TGG V+ + +D++ ++ LG AS +
Sbjct: 315 KGVLAVRRAKKSDLEKLARATGGRVVSN-----IDEISEQDLGYASLI------------ 357
Query: 397 GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELK 451
ER+ +++ + G ++++ G E +
Sbjct: 358 ------------------------EERKVGEDKMVFVEGAKNPKSISILIRGG-LERLVD 392
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E + + DAL +++G + GGG + ++ K+
Sbjct: 393 ETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLR 430
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 9e-14
Identities = 88/496 (17%), Positives = 170/496 (34%), Gaps = 115/496 (23%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
L ++ LGPKG +L G K+ DG + E++++ P A L+ +AAA +
Sbjct: 29 LQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPT----AVLIARAAAAQD 84
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
++ GDGTTT V L L+ + + + G +P +IT G E K + L + +
Sbjct: 85 EITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLS 144
Query: 205 -----LADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEE---------GKSA 244
L VA V A + ++ +A+ V L+ S
Sbjct: 145 NDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSP 204
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITNA 291
++ ++G+ D G P M +N +L+++ +K ++A
Sbjct: 205 KDT-TFIKGLVLDHGGRHP-------DMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSA 256
Query: 292 RDLINVLE----------DAIRGAYPILIIAEDIEQEALATLVVNKLRG----ALKI-AA 336
+ I + +++N+ G +L + A
Sbjct: 257 DQRDKLAASERKFVDAKLKKIIDLKNEVCGM----DPDKGFVIINQK-GIDPMSLDVFAK 311
Query: 337 LKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396
K + ++ + ++TGG ++ + ++LG + V
Sbjct: 312 HNILALRRAKRRNMERLQLVTGGEAQNS-----VEDLSPQILGFSGLV------------ 354
Query: 397 GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETELK 451
Y+ E+ ++ ++ G+ T L
Sbjct: 355 ------------------------YQETIGEEKFTYVTENTDPKSCTILIKGS-THYALA 389
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDE--EKVGADIVKR 508
+ K V D L A +++ I+ G G + LS + + + K G +
Sbjct: 390 QTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAE 449
Query: 509 ALCYPLKLIAKNAGVN 524
AL K + KN+G +
Sbjct: 450 ALLVIPKTLVKNSGFD 465
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 9e-14
Identities = 99/466 (21%), Positives = 178/466 (38%), Gaps = 120/466 (25%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
+A+ V TLGPKG + +L G + NDGVT+ +E+ +E P AK++ +
Sbjct: 26 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEV 81
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A GDGTTT+VV+A L+ + +++ +P ++ +G + ++ LK ++ E
Sbjct: 82 AKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACE 141
Query: 200 VE---DSELADVAA------VSAGNNYEVGNMIAEAMSKVGR-KGVVTLE-------EGK 242
V L +A + ++ +I EA+S V +G V + G
Sbjct: 142 VGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGA 201
Query: 243 SAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLIN 296
S ++ +++G+ D+ +S +M + + K+ L++ K+ T+A I
Sbjct: 202 SIDDT-ELIKGVLVDKERVSA-------QMPKKVTDAKIALLNCAIEIKETETDAEIRIT 253
Query: 297 VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYL 350
L+ + E++ L +V +I A A G + YL
Sbjct: 254 DPAK--------LMEFIEQEEKMLKDMVA-------EIKASGANVLFCQKGIDDLAQHYL 298
Query: 351 DD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV 394
+A TG VI + + + LG+A V
Sbjct: 299 AKEGIVAARRVKKSDMEKLAKATGANVIAA-----IAALSAQDLGDAGLV---------- 343
Query: 395 GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETE 449
ER+ + + + V ++ G TE
Sbjct: 344 --------------------------EERKISGDSMIFVEECKHPKAVTMLIRGT-TEHV 376
Query: 450 LKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
++E V+DA+ +E+G IV GGG T + LS K+ E +
Sbjct: 377 IEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGI 422
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-13
Identities = 94/471 (19%), Positives = 173/471 (36%), Gaps = 137/471 (29%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+ V TLGPKG + +L G + ND T+ +++L+ P AK++ + A +
Sbjct: 35 IAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKTQD 90
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
AGDGTTT+VV+A L+ + +++ +P +IT+G ++ L +++ V+
Sbjct: 91 KEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDD 150
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLE-----------EGKSA 244
+ L +AA + + + + EA+ +V K G+
Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGV 210
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITNA 291
E +V G+ D+ + P +M EN K+ L++ KK IT+
Sbjct: 211 EES-ELVRGVVIDKEVVHP-------RMPKRVENAKIALINEALEVKKTETDAKINITSP 262
Query: 292 RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGER 345
L + + E++ L +V IA A G +
Sbjct: 263 DQL-----MSFL----------EQEEKMLKDMVD-------HIAQTGANVVFVQKGIDDL 300
Query: 346 KSQYLDD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKD 389
YL +A TG ++ + + + E LG A V
Sbjct: 301 AQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTN-----VKDLTPEDLGYAEVV----- 350
Query: 390 TTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGA 444
ER+ E + + G V ++ G
Sbjct: 351 -------------------------------EERKLAGENMIFVEGCKNPKAVTILIRGG 379
Query: 445 QTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
TE + E + +EDA+ K +E+G ++ GG + L+ ++D + +
Sbjct: 380 -TEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV 429
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 7e-13
Identities = 89/459 (19%), Positives = 152/459 (33%), Gaps = 128/459 (27%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIV--NDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143
DLV TLGPKG + +L S ++ NDG T+ K + +++P AK++ +
Sbjct: 23 GDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPA----AKVLVDMSRVQ 78
Query: 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS 203
+D GDGTT+ VLA L+ E ++A +P I G + +KA L + +
Sbjct: 79 DDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSD 138
Query: 204 ELAD------VAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEE-------GKSA 244
E+ +A + + + EA+ ++ KG LE G S
Sbjct: 139 EVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL--KGSGNLEAIHVIKKLGGSL 196
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-------KKITNARDLINV 297
+ Y+ EG D+ EN K+L+ + KI +R ++
Sbjct: 197 ADS-YLDEGFLLDK--------KIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDS 247
Query: 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLD 351
+ E E+E + V +I Q
Sbjct: 248 TAK--------VAEIEHAEKEKMKEKVE-------RILKHGINCFINRQLIYNYPEQLFG 292
Query: 352 D----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVG 395
+A++TGG + D LG+ +
Sbjct: 293 AAGVMAIEHADFVGVERLALVTGGEIAST-----FDHPELVKLGSCKLI----------- 336
Query: 396 DGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETEL 450
E +++ SG ++ GA T+ L
Sbjct: 337 -------------------------EEVMIGEDKLIHFSGVALGEACTIVLRGA-TQQIL 370
Query: 451 KEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E + + DAL V++ V GGGC+ + ++ V
Sbjct: 371 DEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVT 409
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 1e-12
Identities = 89/454 (19%), Positives = 172/454 (37%), Gaps = 107/454 (23%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145
A ++ +LGP+G + +L S G I NDG T+ ++EL++ + AKL+ Q + +D
Sbjct: 58 ASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEI----AKLLVQLSKSQDD 113
Query: 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-- 203
GDGTT VVLA L+ + ++++ G +P+ I G ++ +K +S+L++ ++ S
Sbjct: 114 EIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASND 173
Query: 204 -----ELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEE---------GKS 243
L A + + ++ M EA+ V K ++ G S
Sbjct: 174 ELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGS 233
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINV 297
+ ++ G+ D+ + P + KL ++ K T + I+
Sbjct: 234 ISDS-KLINGVILDKDFSHPQMPK-CVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISS 291
Query: 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLD 351
+E+ + EQ+ ++ + A GF + + L
Sbjct: 292 VEE--------YQKLQTYEQDKFKEMID-------DVKKAGADVVICQWGFDDEANHLLL 336
Query: 352 D----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVG 395
IAI T G ++ + K+ LG S++
Sbjct: 337 QNDLPAVRWVGGQELEHIAISTNGRIVPR-----FQDLSKDKLGTCSRIY-------EQE 384
Query: 396 DGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKL 455
G+T+D + +IE +K + V G+ + + E +
Sbjct: 385 FGTTKDRM--------LIIEQ--------------SKETKTVTCFVRGS-NKMIVDEAER 421
Query: 456 RVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
+ D+L + V++ +V GGG + +S V
Sbjct: 422 ALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVS 455
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 6e-12
Identities = 92/460 (20%), Positives = 156/460 (33%), Gaps = 128/460 (27%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIV-NDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143
+ DLV TLGPKG + +L+S +V NDG T+ K + L++P AK++ +
Sbjct: 29 VGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPA----AKVLVNISKVQ 84
Query: 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGA-NPVLITRGIEKTSKALVSELKQMSKEVED 202
+D GDGTT+ VL+ L+ E K++ +P I G S A + L + + +
Sbjct: 85 DDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSH 144
Query: 203 SE------LADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLE-------EGKS 243
+ L +A + + + + A+ ++ KG LE G
Sbjct: 145 DKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRL--KGSTNLEHIQIIKILGGK 202
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-------KKITNARDLIN 296
+ ++ EG + EN K+L+ + KI + ++
Sbjct: 203 LSDS-FLDEGFILAK--------KFGNNQPKRIENAKILIANTTLDTDKVKIFGTKFKVD 253
Query: 297 VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYL 350
L E E+E + + KI+ + Q
Sbjct: 254 STAK--------LAQLEKAEREKMKNKIA-------KISKFGINTFINRQLIYDYPEQLF 298
Query: 351 DD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV 394
D +A++TGG V+ D+ K LG +
Sbjct: 299 TDLGINSIEHADFEGVERLALVTGGEVVST-----FDEPSKCKLGECDVI---------- 343
Query: 395 GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETE 449
E + K SG ++ GA T+
Sbjct: 344 --------------------------EEIMLGEQPFLKFSGCKAGEACTIVLRGA-TDQT 376
Query: 450 LKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
L E + + DAL+ +E V+GGGC + +S VD
Sbjct: 377 LDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVD 416
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 6e-12
Identities = 83/443 (18%), Positives = 156/443 (35%), Gaps = 87/443 (19%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145
A++V +LGP G + +L G I NDG T+ K +E+E P AK++ + A +
Sbjct: 23 ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKVLCELADLQDK 78
Query: 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL-KQMSKEVEDS- 203
GDGTT+ V++A L+ ++V +P + G K V + + + ++
Sbjct: 79 EVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG 138
Query: 204 --ELADVAA------VSAGNNYEVGNMIAEAMSKV-----GRKGVVTLE-------EGKS 243
L + A V N N++ +A+ + + + G+S
Sbjct: 139 RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRS 198
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINV 297
++ G + S M N K+ +D K+ + +I
Sbjct: 199 QMES-MLINGYALNCVVGSQ-------GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITD 250
Query: 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLD 351
E L E + + KI A A G + +Y
Sbjct: 251 PEK--------LDQIRQRESDITKERIQ-------KILATGANVILTTGGIDDMCLKYFV 295
Query: 352 DIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIR 411
+ + V++ + L ++ K G T++ ST +
Sbjct: 296 EAGAMAVRRVLKRD----LKRIAK-ASG-----------ATVL---STLANLEGEETFEA 336
Query: 412 TLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETELKEKKLRVEDALNATKA 466
+++ AE+ + ++ + + +VI GA + E + + DAL K
Sbjct: 337 SMLGQAEEVVQERICDDELILIKNTKARTSASVILRGA-NDFMCDEMERSLHDALCVVKR 395
Query: 467 AVEEG-IVVGGGCTLLRLSSKVD 488
+E +V GGG LS ++
Sbjct: 396 VLESKSVVPGGGAVEAALSIYLE 418
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 8e-12
Identities = 90/577 (15%), Positives = 187/577 (32%), Gaps = 171/577 (29%)
Query: 52 LRRARTPKIYAAKDLHFNKD-GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPK 110
L + + + + + M ++ P + + +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKT----------EQRQPSMMTRMYIEQRD--R 118
Query: 111 IVNDGVTVAK-EVELEDPVENIGAKLVRQAAAKTND--------LAGDGTTTSVVLAQGL 161
+ ND AK V P + RQA + + G G T +A
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKL-----RQALLELRPAKNVLIDGVLGSGKT---WVA-LD 169
Query: 162 IAEGVKVVAAGANPVL-ITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVG 220
+ KV + + + + ++ L+++ +++ + + +N ++
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLR 226
Query: 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYEN-- 278
I +++ R L + K EN L V+ + V +++ A N
Sbjct: 227 --IHSIQAELRR-----LLKSKPYENCLLVLL----N--------VQNAK--AWNAFNLS 265
Query: 279 CKLLLV--DKKITNARD------------------------LINVL--------EDAIRG 304
CK+LL K++T+ L+ L + +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 305 AYPILI--IAEDIEQEALAT------LVVNKLRGALK--IAALKAPGFGERKSQYLDDIA 354
P + IAE I ++ LAT + +KL ++ + L+ E + + D ++
Sbjct: 326 N-PRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPA---EYRKMF-DRLS 379
Query: 355 ILTGGTVIRDEVGLAL---DKVGKEV------LGNASKVVLTKDTTTIVGDGSTQDAVSK 405
+ I + L+L D + +V L S V +TI + K
Sbjct: 380 VFPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 406 RVAQI---RTLIE--NAEQDYEREKLNERIAKLSG------G--VAVIQVGAQTETELK- 451
+ R++++ N + ++ + L L G + I+ + T +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEH-PERMTLFRM 495
Query: 452 --------EKKLRVED-ALNATKAAVEEGIVVGGGCTLLRL--------------SSKVD 488
E+K+R + A NA+ + + TL +L V+
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILN---------TLQQLKFYKPYICDNDPKYERLVN 546
Query: 489 AIKETLDNDEEKV----GADIVKRALCYPLKLIAKNA 521
AI + L EE + D+++ AL + I + A
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 64/234 (27%)
Query: 268 DSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNK 327
D E +Y+ +D+++V EDA + + +D+ + L+ ++
Sbjct: 8 DFETGEHQYQY-------------KDILSVFEDAFVDNFDCKDV-QDMPKSILSKEEIDH 53
Query: 328 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT 387
+ + + + L L L K +E++ + VL
Sbjct: 54 I--------IMSKDAVSG-TLRL--FWTL-------------LSK-QEEMVQKFVEEVLR 88
Query: 388 KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 447
+ + ++ I+T E + E+ +L QV A+
Sbjct: 89 INYKFL-------------MSPIKT--EQRQPSMMTRMYIEQRDRLYNDN---QVFAKYN 130
Query: 448 TELKEKKLRVEDALNATKAAVEEGIVV-G-GGC--TLLRLSS-KVDAIKETLDN 496
+ L++ AL + + +++ G G T + L ++ +D
Sbjct: 131 VSRLQPYLKLRQAL--LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 8e-12
Identities = 90/458 (19%), Positives = 170/458 (37%), Gaps = 111/458 (24%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
+A+ + +LGP G + ++ K G + NDG T+ ++++ + AKL+ +
Sbjct: 17 MAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI----AKLMVEL 72
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
+ +D GDGTT VVLA L+ E +++ G +P+ I G E+ ++ + L ++S
Sbjct: 73 SKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDS 132
Query: 200 VE-----DSELADVAA------VSAGNNYEVGNMIAEAMSKV--GRKGVVTLE------- 239
V L A V + ++ + A+ V ++ V E
Sbjct: 133 VLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGK 192
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARD 293
G E+ +++G+ D+ + P +M + E+ K+ ++ K T +
Sbjct: 193 VGGRLEDT-KLIKGVIVDKDFSHP-------QMPKQVEDAKIAILTCPFEPPKPKTKHKL 244
Query: 294 LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKS 347
+ +ED + E+E ++ +I A GF + +
Sbjct: 245 DVTSVED--------FKALQKYEKEKFEEMIR-------QIKETGANLAVCQWGFDDEAN 289
Query: 348 QYLDD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTT 391
L IAI TGG ++ ++ E LG A V
Sbjct: 290 HLLLQNDLPAVRWVGGPEIELIAIATGGRIVPR-----FSELTAEKLGFAGLV------- 337
Query: 392 TIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK 451
+ G+T+D + +IE K S V + G + ++
Sbjct: 338 KEISFGTTKDKM--------LVIEQ--------------CKNSRAVTIFIRGG-NKMIIE 374
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E K + DAL + + + +V GGG + + V
Sbjct: 375 EAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVS 412
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145
AD + +LGPKG + +++ G I NDG T+ K++++ P A+++ + + +
Sbjct: 24 ADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPA----ARMLVELSKAQDI 79
Query: 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS 203
AGDGTT+ V++A L+ K++ G +P +I+ +K + + L MS+ VE S
Sbjct: 80 EAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELS 137
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 82/451 (18%), Positives = 163/451 (36%), Gaps = 89/451 (19%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145
A++V +LGP G + +L G + NDG T+ ++++ P K++ + A + +
Sbjct: 37 ANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPA----GKILVELAQQQDR 92
Query: 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE--- 201
GDGTT+ V++A L+ ++V +P I G + + + + +S V+
Sbjct: 93 EIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLG 152
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKV-----GRKGVVTLE-------EGKS 243
L ++A + ++ NM+ +A+ V + ++ GKS
Sbjct: 153 KETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKS 212
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKM--AVEYENCKLLLVD-----KKI-TNARDLI 295
A +V G + S M + N K+ +D ++ + I
Sbjct: 213 ATES-LLVPGYALNCTVASQ-------AMPKRIAGGNVKIACLDLNLQKARMAMGVQINI 264
Query: 296 NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQY 349
+ E L E + V KI A G + +
Sbjct: 265 DDPEQ--------LEQIRKREAGIVLERVK-------KIIDAGAQVVLTTKGIDDLCLKE 309
Query: 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQ 409
+ I+ +R KE L ++ T+V S+ +
Sbjct: 310 FVEAKIM----GVRR--------CKKEDLRRIARAT----GATLV---SSMSNLEGEETF 350
Query: 410 IRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELKEKKLRVEDALNAT 464
+ + ++ + + ++ + G ++I GA + L E + + D+L+
Sbjct: 351 ESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGA-NDYSLDEMERSLHDSLSVV 409
Query: 465 KAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
K +E G +V GGGC L+ +D T+
Sbjct: 410 KRTLESGNVVPGGGCVEAALNIYLDNFATTV 440
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 82/439 (18%), Positives = 166/439 (37%), Gaps = 124/439 (28%)
Query: 111 IVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVA 170
I NDG T+ KE++++ P AK++ + + + GDGTTT+ VL+ L+++ +++
Sbjct: 11 ITNDGATILKEMDIQHPA----AKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIM 66
Query: 171 AGANPVLITRGIEKTSKALVSELKQMSKEVE---DSELADVAA------VSAGNNYEVGN 221
G + +I+ G ++ L+ ++ + ++ L +A + ++
Sbjct: 67 KGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSA 126
Query: 222 MIAEAMSKV-----GRKGVVTLE-------EGKSAENMLYVVEGMQFDRGYISPYFVTDS 269
+ +A+ + V LE G S ++ +++G+ D+ P
Sbjct: 127 LTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDS-ELIDGLVIDKERSHP------ 179
Query: 270 EKMAVEYENCKLLLVD-----KKI-TNARDLINVLEDAIRGAYPILIIAEDIEQEALATL 323
M + EN K+LL+ +K ++ I + + D E++ + +
Sbjct: 180 -NMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQ--------MQLFLDQEEKMMREM 230
Query: 324 VVNKLRGALKIAALKA------PGFGERKSQYLDD----------------IAILTGGTV 361
K+ A A G + Y++ ++ +TG T+
Sbjct: 231 AE-------KVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATI 283
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I+D LD++ E +G A V
Sbjct: 284 IQD-----LDQITTEDVGTAGLV------------------------------------E 302
Query: 422 EREKLNERIAKLSGG-----VAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVG 475
E+E ++ ++G V V+ G TE + + DAL+ +E+G +VVG
Sbjct: 303 EKEVRGGKMTYVTGCQNSKAVTVLLHGG-TEHVVDSLDHALNDALHVVGVVIEDGKVVVG 361
Query: 476 GGCTLLRLSSKVDAIKETL 494
GG + + LS ++ TL
Sbjct: 362 GGSSEVELSLRLSEYASTL 380
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| 1kp8_A | 547 | Groel protein; chaperonin, assisted protein foldin | 100.0 | |
| 1we3_A | 543 | CPN60(groel); chaperonin, chaperone, groel, HSP60, | 100.0 | |
| 3rtk_A | 546 | 60 kDa chaperonin 2; heat shock protein, chaperone | 100.0 | |
| 1iok_A | 545 | Chaperonin 60; chaperone; 3.20A {Paracoccus denitr | 100.0 | |
| 3p9d_C | 590 | T-complex protein 1 subunit gamma; HSP60, eukaryot | 100.0 | |
| 3p9d_A | 559 | T-complex protein 1 subunit alpha; HSP60, eukaryot | 100.0 | |
| 3ko1_A | 553 | Chaperonin; 9-fold symmetry, double ring, ATP hydr | 100.0 | |
| 3iyg_B | 513 | T-complex protein 1 subunit beta; TRIC/CCT, asymme | 100.0 | |
| 1q3q_A | 548 | Thermosome alpha subunit; chaperone, chaperonin; H | 100.0 | |
| 3iyg_H | 515 | T-complex protein 1 subunit ETA; TRIC/CCT, asymmet | 100.0 | |
| 3ruv_A | 543 | Chaperonin, CPN; double-ring, protein folding mach | 100.0 | |
| 1a6d_B | 543 | Thermosome (beta subunit); group II chaperonin, CC | 100.0 | |
| 1a6d_A | 545 | Thermosome (alpha subunit); group II chaperonin, C | 100.0 | |
| 3p9d_D | 528 | T-complex protein 1 subunit delta; HSP60, eukaryot | 100.0 | |
| 3iyg_A | 529 | T-complex protein 1 subunit alpha; TRIC/CCT, asymm | 100.0 | |
| 3iyg_E | 515 | T-complex protein 1 subunit; TRIC/CCT, asymmetric, | 100.0 | |
| 3iyg_D | 518 | T-complex protein 1 subunit delta; TRIC/CCT, asymm | 100.0 | |
| 3p9d_B | 527 | T-complex protein 1 subunit beta; HSP60, eukaryoti | 100.0 | |
| 3p9d_G | 550 | T-complex protein 1 subunit ETA; HSP60, eukaryotic | 100.0 | |
| 3p9d_E | 562 | T-complex protein 1 subunit epsilon; HSP60, eukary | 100.0 | |
| 3iyg_Q | 512 | T-complex protein 1 subunit theta; TRIC/CCT, asymm | 100.0 | |
| 3iyg_G | 515 | T-complex protein 1 subunit gamma; TRIC/CCT, asymm | 100.0 | |
| 3iyg_Z | 517 | T-complex protein 1 subunit zeta; TRIC/CCT, asymme | 100.0 | |
| 3p9d_H | 568 | T-complex protein 1 subunit theta; HSP60, eukaryot | 100.0 | |
| 3p9d_F | 546 | T-complex protein 1 subunit zeta; HSP60, eukaryoti | 100.0 | |
| 3aq1_B | 500 | Thermosome subunit; group II chaperonin, protein f | 100.0 | |
| 3m6c_A | 194 | 60 kDa chaperonin 1; chaperone, ATP-binding, nucle | 100.0 | |
| 3osx_A | 201 | 60 kDa chaperonin; alpha, beta, apical domain, cha | 100.0 | |
| 1srv_A | 145 | Protein (groel (HSP60 class)); chaperone, cell div | 100.0 | |
| 1gml_A | 178 | T-complex protein 1 subunit gamma; chaperone, chap | 99.87 | |
| 1ass_A | 159 | Thermosome; chaperonin, HSP60, TCP1, groel, thermo | 99.78 |
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-112 Score=929.27 Aligned_cols=466 Identities=56% Similarity=0.844 Sum_probs=456.1
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|+|.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+||+||||++++|++
T Consensus 2 ~k~~~~g--~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~ 79 (547)
T 1kp8_A 2 AKDVKFG--NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASK 79 (547)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred Ccccccc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHh
Confidence 7999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|+++. +|.++|++|++++++|++
T Consensus 80 qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~ 159 (547)
T 1kp8_A 80 ANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGK 159 (547)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHH
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877 999999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
|++||+.+++++|+|++++|++++||+++++||+|+++|.||||++++++|+++++||+||++|++|+++++++++++++
T Consensus 160 liadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i 239 (547)
T 1kp8_A 160 LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAV 239 (547)
T ss_dssp HHHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHH
T ss_pred HHHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.|++++++++++||+|
T Consensus 240 ~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a 319 (547)
T 1kp8_A 240 AKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQA 319 (547)
T ss_dssp HGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEE
T ss_pred HhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 382 ~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
++|++++++|++|+||++++.+++|++||+.+++.++++|+||+|+||+++|+|++|||+|||+|+.+++|+||+++|||
T Consensus 320 ~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl 399 (547)
T 1kp8_A 320 KRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDAL 399 (547)
T ss_dssp EEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred eEEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++|+++++|+|||||++|++++.+|++++. .++. +++++++|++||+.||++||+|||+|+.+++.+|
T Consensus 400 ~~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~g~-~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l 468 (547)
T 1kp8_A 400 HATRAAVEEGVVAGGGVALIRVASKLADLRG-QNAD-QNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTV 468 (547)
T ss_dssp HHHHHHHHHCEEETTTHHHHHHHHHTTTCCC-SSHH-HHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHhccCCEEeCCcHHHHHHHHHHHHHhc-cCch-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999998875 5454 4599999999999999999999999999999874
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-111 Score=920.93 Aligned_cols=466 Identities=56% Similarity=0.862 Sum_probs=456.4
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|+|.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+||+||||++++|++
T Consensus 2 ~k~~~~g--~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~ 79 (543)
T 1we3_A 2 AKILVFD--EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASK 79 (543)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred Ccccccc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHh
Confidence 7999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|+++. +|.+||++|++ +++|++
T Consensus 80 qd~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~l~~vA~iS~~-~~~i~~ 158 (543)
T 1we3_A 80 TNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISAN-DPEVGK 158 (543)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHHH
T ss_pred hheecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHhhhhhcC-CHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877 99999999998 899999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
|++||+.+++++|+|++++|++++|++++++||+|+++|.||||++++++|+++++||+||++|++|+++++++++++++
T Consensus 159 li~dAv~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is~~~~l~~~le~i 238 (543)
T 1we3_A 159 LIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQV 238 (543)
T ss_dssp HHHHHHHTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCcEEEecCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.|++++++++++||+|
T Consensus 239 ~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a 318 (543)
T 1we3_A 239 AQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRA 318 (543)
T ss_dssp HTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEE
T ss_pred HhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 382 ~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
+.|+++++++++|+||++++.+++|++||+.++++++++|++|+|+||+++|+|++|||+|||+|+.+++|+||+++|||
T Consensus 319 ~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl 398 (543)
T 1we3_A 319 ERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDAL 398 (543)
T ss_dssp EEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++|+++++|+|||||++|++++.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 399 ~~~r~av~~giVpGGGa~e~~~s~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 468 (543)
T 1we3_A 399 NATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEA-TGAKIVRRALEEPARQIAENAGYEGSVIVQQI 468 (543)
T ss_dssp HHHHHHHHHCEEETTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHhccCcCCCccHHHHHHHHHHHHHhhccCchHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 99999999999999999999999999999876666655 89999999999999999999999999998864
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-112 Score=929.94 Aligned_cols=464 Identities=57% Similarity=0.851 Sum_probs=386.3
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|+|.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||++|+||||++++|++
T Consensus 2 ~k~~~~~--~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~ 79 (546)
T 3rtk_A 2 AKTIAYD--EEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKK 79 (546)
T ss_dssp -------------------------------------------------------------CCCHHHHHHHHHHHHHHTS
T ss_pred Cceeecc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHh
Confidence 7999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|+++. +|.+||++|++ +++|++
T Consensus 80 qd~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~~e~L~~vA~iS~~-~~~i~~ 158 (546)
T 3rtk_A 80 TDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG-DQSIGD 158 (546)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHHH
T ss_pred hhhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHhHeEEeCC-chHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999977 99999999998 889999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
|++||+.+++++|+|+++.+....+.+++++||+|+++|.||||++++++|+++++||+|+++|++|+++++++++++++
T Consensus 159 liadAv~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs~~~~l~~~le~I 238 (546)
T 3rtk_A 159 LIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKV 238 (546)
T ss_dssp HHHHHHHHSCTTSEEEEECCSSSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEECCSTTTHHHHHHH
T ss_pred HHHHHHHHhccCCceEEEecCCcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccCCHHHHHHHHHHH
Confidence 99999999999999999888776555599999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+|||||+++|+++|+++|+.|+++|+++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++||+|
T Consensus 239 ~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a 318 (546)
T 3rtk_A 239 IGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKA 318 (546)
T ss_dssp HTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEE
T ss_pred HhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 382 ~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
++|+++++++++|+||++++.++.|++||+.++++++++||+|+|+||+++|+|++|||+|||+|+.+++|+||+++|||
T Consensus 319 ~~v~i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl 398 (546)
T 3rtk_A 319 RKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAV 398 (546)
T ss_dssp EEEEECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHH
T ss_pred EEEEEcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++|+++++|+|||||++|++++.+|++++ +++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 399 ~a~r~av~~giVpGGGa~e~~~s~~L~~~~--~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 466 (546)
T 3rtk_A 399 RNAKAAVEEGIVAGGGVTLLQAAPTLDELK--LEGDEA-TGANIVKVALEAPLKQIAFNSGLEPGVVAEKV 466 (546)
T ss_dssp HHHHHHHHHCEEETTTHHHHTTGGGSTTSC--CCTTHH-HHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHhCCcccCCcHHHHHHHHHHHHhc--cccHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999999999999999887 666665 89999999999999999999999999998764
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-112 Score=927.93 Aligned_cols=466 Identities=54% Similarity=0.847 Sum_probs=413.6
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|+|.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+||+||||++++|++
T Consensus 3 ~k~~~~g--~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~ 80 (545)
T 1iok_A 3 AKEVKFN--SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASR 80 (545)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred chhhhcc--HHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHh
Confidence 7999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHhhhcCChhhHhH
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~is~ 221 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|+++. +|.+||++|++++++|++
T Consensus 81 qd~e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~va~iS~~~~~~i~~ 160 (545)
T 1iok_A 81 TNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQ 160 (545)
T ss_dssp GGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCCSTTTTTHHHHHTTTTCHHHHH
T ss_pred hccccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHhhcCCchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHH
Q 009575 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (532)
Q Consensus 222 li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i 301 (532)
|++||+.+++++|+|++++|++++||+++++||+|+++|.||||++++++|+++++||+||++|++|+++++++++++++
T Consensus 161 li~dAv~~V~~~g~I~Ve~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~~~~~l~~~le~i 240 (545)
T 1iok_A 161 QIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESV 240 (545)
T ss_dssp HHHHHHHHHCTTSCCCCEECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC--------
T ss_pred HHHHHHHHhccCCeEEEEeCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||++++++|+|||++|||+++++++|++++++++++||+|
T Consensus 241 ~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a 320 (545)
T 1iok_A 241 IQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRA 320 (545)
T ss_dssp ---CCCCEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEE
T ss_pred HhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 382 ~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
++|++++++|++|+||++++.+++|++||+.+++.++++|+||+|+||+++|+|++|||+|||+|+.+++|+||+++|||
T Consensus 321 ~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl 400 (545)
T 1iok_A 321 KKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDAL 400 (545)
T ss_dssp EEEEECSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++|+++++|+|||||++|++++++|++++. .++. +++++++|++||+.||++||+|||+|+.+++.+|
T Consensus 401 ~~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~g~-~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 469 (545)
T 1iok_A 401 NATRAAVQEGIVVGGGVALVQGAKVLEGLSG-ANSD-QDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKV 469 (545)
T ss_dssp HHHHHHHHHCEEETTTHHHHHHGGGGGSCCC-SSHH-HHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHHHhc-cCch-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999998875 5554 4599999999999999999999999999998864
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-92 Score=777.87 Aligned_cols=433 Identities=19% Similarity=0.279 Sum_probs=370.6
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhcc
Q 009575 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (532)
Q Consensus 64 k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~ 143 (532)
.+..+| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++|
T Consensus 12 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~----Akll~e~a~~q 85 (590)
T 3p9d_C 12 QERTTG--RQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPA----AKSMLELSRTQ 85 (590)
T ss_dssp CCBCTT--HHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHH----HHTHHHHTTTH
T ss_pred cchhhH--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHH----HHHHHHHHHhh
Confidence 456788 899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc--h-hHHHHHhhhcC-----
Q 009575 144 NDLAGDGTTTSVVLAQGLIAEGVKV-VAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAG----- 214 (532)
Q Consensus 144 d~~~GDGTTt~vvLa~~Ll~~~~~l-i~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~----- 214 (532)
|+++||||||+||||++||+++.++ +++|+||+.|++||++|++.++++|+++++|++. . +|.++|+||++
T Consensus 86 d~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~L~~vA~tslsSK~~~ 165 (590)
T 3p9d_C 86 DEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVI 165 (590)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTTCCTHHHHHHHTTTSTTSTTG
T ss_pred hhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999 9999999999999999999999999999999875 3 89999998864
Q ss_pred -ChhhHhHHHHHHHHhhccCCc----------------eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeee
Q 009575 215 -NNYEVGNMIAEAMSKVGRKGV----------------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVE 275 (532)
Q Consensus 215 -~~~~is~li~eA~~~vg~~g~----------------I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~ 275 (532)
++++|++|++||+.+++++|. |++ .+|++++|+ ++++||+|++++.+| +|+++
T Consensus 166 ~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds-~lv~Gmvfdk~~~~~-------~m~~~ 237 (590)
T 3p9d_C 166 HWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDS-RVLKGVLLNKDVVHP-------KMSRH 237 (590)
T ss_dssp GGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGC-BCCSSEEECCCCSCT-------TSCSC
T ss_pred ccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccc-eeeeEEEEecccCCC-------CCcce
Confidence 579999999999999998653 333 469999999 899999999998776 48889
Q ss_pred ccceeEeeeccc-------------CCCHHHHHHHH-----------HHHHhcCCCeEEEcccccHHHHHHHHHhhhccc
Q 009575 276 YENCKLLLVDKK-------------ITNARDLINVL-----------EDAIRGAYPILIIAEDIEQEALATLVVNKLRGA 331 (532)
Q Consensus 276 ~~npkIll~d~~-------------I~~~~el~~~l-----------e~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~ 331 (532)
++||+|+++|++ |++++++.+++ +++++.|++|||++++|+++|+++|+++++
T Consensus 238 ~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~I--- 314 (590)
T 3p9d_C 238 IENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGC--- 314 (590)
T ss_dssp EESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTTC---
T ss_pred eeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhccc---
Confidence 999999999995 35566665544 688899999999888999999999998743
Q ss_pred ceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCce-eeEEE---EeCceEEEEcCCCChhh-----
Q 009575 332 LKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVV---LTKDTTTIVGDGSTQDA----- 402 (532)
Q Consensus 332 ~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~-~~~v~---i~~~~~~~i~g~~~~~~----- 402 (532)
+.|+++++.+|+|||++|||++++ +++++++++||+ |+.|+ +++++|++|.||+++..
T Consensus 315 --------~av~~~~k~~le~ia~~TGa~iis-----~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~~ 381 (590)
T 3p9d_C 315 --------SVLRRVKKSDNNRIARVTGATIVN-----RVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWS 381 (590)
T ss_dssp --------CCCCCCCHHHHHHHHHHHTCCCCS-----CSTTCCTTSCBCCCSEEECCEETTEECEEECC-----------
T ss_pred --------eeeccCCHHHHHHHHHHhCCceee-----cccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCcccccccc
Confidence 467899999999999999999998 589999999999 99997 57899999999998888
Q ss_pred ---------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009575 403 ---------------------VSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (532)
Q Consensus 403 ---------------------i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl 461 (532)
+++|++||+.+++.++++|+++ +++|+|++|||+|||+|+.+++|+||+++|||
T Consensus 382 ~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~-----~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl 456 (590)
T 3p9d_C 382 HPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHH-----HHHGSGKACTIMLRGGSKDILNEIDRNLQDAM 456 (590)
T ss_dssp ---------------------------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHH
T ss_pred ccccccccchhhhhcchhhHHHHHHHHHHHHHHhccCCHHHHH-----HHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999966 47899999999999999999999999999999
Q ss_pred HHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 462 NATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 462 ~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++|+++++| +|||||++|++++.+|++++.++++.+| +++++|++||+.||++||+|||+||.+++.+|
T Consensus 457 ~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 527 (590)
T 3p9d_C 457 AVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQ-WPYQAVADAMECIPRTLIQNAGGDPIRLLSQL 527 (590)
T ss_dssp HHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCSTTH-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999995 9999999999999999999888888776 89999999999999999999999999998764
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-90 Score=758.40 Aligned_cols=409 Identities=22% Similarity=0.333 Sum_probs=379.3
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|++.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++
T Consensus 16 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 89 (559)
T 3p9d_A 16 GGEKISG--DDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPA----GKILVELAQQ 89 (559)
T ss_dssp SCEEEET--HHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHH----HHHHHHHHHH
T ss_pred cccccch--HHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHH----HHHHHHHHHH
Confidence 6999999 999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh-cccccCc--h-hHHHHHhhhcCC---
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVED--S-ELADVAAVSAGN--- 215 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~-~s~~v~~--~-~l~~va~ts~~~--- 215 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++ +++|++. . +|.++|+||+++
T Consensus 90 qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~L~~vA~tsl~sK~~ 169 (559)
T 3p9d_A 90 QDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKII 169 (559)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CTTHHHHHHHTTSSSGG
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999 9999985 3 899999999875
Q ss_pred ---hhhHhHHHHHHHHhhcc-----CCc-----eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeecc--c
Q 009575 216 ---NYEVGNMIAEAMSKVGR-----KGV-----VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYE--N 278 (532)
Q Consensus 216 ---~~~is~li~eA~~~vg~-----~g~-----I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~--n 278 (532)
+++|++|++||+.++++ +|. |++ .+|++++|| ++++||+|+++|.||+ |+++++ |
T Consensus 170 ~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds-~lv~G~v~dk~~~~~~-------m~~~ie~~n 241 (559)
T 3p9d_A 170 GADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATES-LLVPGYALNCTVASQA-------MPKRIAGGN 241 (559)
T ss_dssp GTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCC-BCCSEECCCCCCSSTT-------SCSEECSSS
T ss_pred cchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccce-eEeccEEEeecccCCC-------cceeeccCC
Confidence 89999999999999984 244 433 359999998 8999999999999997 456788 9
Q ss_pred eeEeeecccC-------------CCHHH-----------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceE
Q 009575 279 CKLLLVDKKI-------------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKI 334 (532)
Q Consensus 279 pkIll~d~~I-------------~~~~e-----------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i 334 (532)
|+|+++|++| +++++ +.++++++.+.|+||||++++|+++|+++|++|++
T Consensus 242 ~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~I------ 315 (559)
T 3p9d_A 242 VKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKI------ 315 (559)
T ss_dssp BCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTTC------
T ss_pred ceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCC------
Confidence 9999999987 34444 67889999999999999999999999999999853
Q ss_pred EEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccc-cCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHH
Q 009575 335 AALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLAL-DKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQI 410 (532)
Q Consensus 335 ~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l-~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i 410 (532)
+|| +++++++|+|||++|||+++++..++.+ +++++++||+|+.|+ +++++|++|.||++
T Consensus 316 ~av-----~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~----------- 379 (559)
T 3p9d_A 316 MGV-----RRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSK----------- 379 (559)
T ss_dssp EEE-----SSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESS-----------
T ss_pred ceE-----ccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCC-----------
Confidence 555 4788999999999999999998777665 889999999999998 58999999999876
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHH
Q 009575 411 RTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDA 489 (532)
Q Consensus 411 ~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~ 489 (532)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++
T Consensus 380 ------------------------~~~~tI~lrG~te~~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~ 435 (559)
T 3p9d_A 380 ------------------------HSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDN 435 (559)
T ss_dssp ------------------------SCCCCEEEEESCHHHHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHH
T ss_pred ------------------------CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999 999999999999999999
Q ss_pred HhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 490 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 490 ~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++.++++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 436 ~~~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 477 (559)
T 3p9d_A 436 FATTVGSREQ-LAIAEFAAALLIIPKTLAVNAAKDSSELVAKL 477 (559)
T ss_dssp HHTTSCTTHH-HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HhcccChHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9888888776 89999999999999999999999999998764
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-88 Score=743.98 Aligned_cols=404 Identities=22% Similarity=0.380 Sum_probs=371.3
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
..+..|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++
T Consensus 22 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 95 (553)
T 3ko1_A 22 GSSRTYG--KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPA----AKLLVQIAKG 95 (553)
T ss_dssp ------C--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHH----HHHHHHHHHT
T ss_pred Ccccchh--HHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChh----HHHHHHHhhC
Confidence 3567788 899999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--ch-hHHHHHhhhcCC----
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN---- 215 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~---- 215 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. +|.++|+||+++
T Consensus 96 qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~L~~vA~tsl~sK~~~ 175 (553)
T 3ko1_A 96 QDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVA 175 (553)
T ss_dssp CSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHHHHHHHHHHHTTSSCC
T ss_pred CcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHhhHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999987 45 899999999875
Q ss_pred --hhhHhHHHHHHHHhhccC--Cc-------eEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009575 216 --NYEVGNMIAEAMSKVGRK--GV-------VTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (532)
Q Consensus 216 --~~~is~li~eA~~~vg~~--g~-------I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIl 282 (532)
+++|++|++||+.+++++ |+ |+++ +|++++|+ ++++||+|+++|.||+ |+++++||+|+
T Consensus 176 ~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIl 247 (553)
T 3ko1_A 176 GAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDT-QLVYGIVVDKEVVHPG-------MPKRLENAKIA 247 (553)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGC-EEESEEEECSCBSCTT-------SCSCCBSCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccc-eeeEEEEecccccCCC-------CccccccceEE
Confidence 799999999999999986 76 7774 78899999 8999999999999997 46679999999
Q ss_pred eeccc-------------CCCHHH-----------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEee
Q 009575 283 LVDKK-------------ITNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (532)
Q Consensus 283 l~d~~-------------I~~~~e-----------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk 338 (532)
++|++ |+++++ +.++++++.+.|+||||++++|+++++++|.++ +|++|+
T Consensus 248 l~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~------gI~~v~ 321 (553)
T 3ko1_A 248 LIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKK------GVLAVR 321 (553)
T ss_dssp EECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHH------TCEEEC
T ss_pred EecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhc------chhhhh
Confidence 99994 677776 466789999999999999999999999999865 345665
Q ss_pred CCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009575 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (532)
Q Consensus 339 ~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~ 415 (532)
++++++|+|||++|||++++ +++++++++||+|+.|++. +++|+||.||+++
T Consensus 322 -----~v~k~~leria~~tGa~ivs-----~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~--------------- 376 (553)
T 3ko1_A 322 -----RAKKSDLEKLARATGGRVVS-----NIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP--------------- 376 (553)
T ss_dssp -----CCCHHHHHHHHTTTTCCEES-----CGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSS---------------
T ss_pred -----hhhhhhHHHHHHhhCCeeec-----ccccCChhhcchHHHHHHhhcCcceEEEeccCCCC---------------
Confidence 66799999999999999999 5899999999999999964 8899999999864
Q ss_pred hhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccC
Q 009575 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (532)
Q Consensus 416 ~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (532)
..+||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.++
T Consensus 377 --------------------~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~ 436 (553)
T 3ko1_A 377 --------------------KSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQV 436 (553)
T ss_dssp --------------------SCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred --------------------ceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhhcCceecCCceeEeHHHHHHHHhcccc
Confidence 589999999999999999999999999999999999 99999999999999999998888
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 437 ~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 473 (553)
T 3ko1_A 437 GGKEQ-LAVEAYANALESLVSILIENAGFDPIDLLMKL 473 (553)
T ss_dssp CSHHH-HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CChhH-hHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHH
Confidence 88777 89999999999999999999999999998764
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-88 Score=737.40 Aligned_cols=402 Identities=22% Similarity=0.315 Sum_probs=373.6
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCC--CCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009575 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKY--GAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (532)
Q Consensus 64 k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~--g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~ 141 (532)
.+-.|| .++|..|+.|++.|+++|++||||+||||||++++ |+|+|||||+||||+|+++||. |||++++|+
T Consensus 3 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~----Akll~e~a~ 76 (513)
T 3iyg_B 3 ADEERA--ETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPA----AKVLVDMSR 76 (513)
T ss_pred cchhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHH----HHHHHHHHH
Confidence 455688 99999999999999999999999999999999999 9999999999999999999997 999999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC-----ch-hHHHHHhhhcC-
Q 009575 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-----DS-ELADVAAVSAG- 214 (532)
Q Consensus 142 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~-----~~-~l~~va~ts~~- 214 (532)
+||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. +|.++|+||++
T Consensus 77 ~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslss 156 (513)
T 3iyg_B 77 VQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSS 156 (513)
T ss_pred HhhhhhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999987 34 89999998864
Q ss_pred -----ChhhHhHHHHHHHHhhccC---CceEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009575 215 -----NNYEVGNMIAEAMSKVGRK---GVVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (532)
Q Consensus 215 -----~~~~is~li~eA~~~vg~~---g~I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~ 284 (532)
++++|++|++||+.+++++ ++|+++ +|++++|| ++++||+|+++|.+| |+++++||+|+++
T Consensus 157 K~~~~~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds-~lv~G~v~dk~~~~~--------m~~~~en~kIll~ 227 (513)
T 3iyg_B 157 KLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADS-YLDEGFLLDKKIGVN--------QPKRIENAKILIA 227 (513)
T ss_pred cccccchHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccce-eEEeeEEEeccccCC--------CceeecCceEEEE
Confidence 5789999999999999987 778774 69999999 999999999999886 6788999999999
Q ss_pred cc--------------cCCCHHHHHH-----------HHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeC
Q 009575 285 DK--------------KITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (532)
Q Consensus 285 d~--------------~I~~~~el~~-----------~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~ 339 (532)
|+ +|++++++.+ +++++++.|+||||++++|+++++++|..+ +|+||+.
T Consensus 228 ~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~------~I~av~~ 301 (513)
T 3iyg_B 228 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAA------GVMAIEH 301 (513)
T ss_pred cCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHc------CceEEec
Confidence 98 3667777654 689999999999999999999999999875 6799998
Q ss_pred CCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHh
Q 009575 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (532)
Q Consensus 340 ~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~ 416 (532)
|+ +.+|+|||++|||++++ +++++++++||+|++|+ ++++++++|.||++
T Consensus 302 ~~-----~~~le~ia~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~----------------- 354 (513)
T 3iyg_B 302 AD-----FVGVERLALVTGGEIAS-----TFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVAL----------------- 354 (513)
T ss_pred CC-----HHHHHHHHHHhCCEEec-----ccccCCHhHCCcccEEEEEEECCeEEEEEecCCC-----------------
Confidence 87 47899999999999999 58999999999999998 67889999999875
Q ss_pred hhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCC
Q 009575 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (532)
Q Consensus 417 ~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~ 495 (532)
+++|||+|||+|+.+++|+||+++||||++|++++++ +|||||++|++++++|++++.+++
T Consensus 355 ------------------~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~ 416 (513)
T 3iyg_B 355 ------------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTP 416 (513)
T ss_pred ------------------CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhhccC
Confidence 4699999999999999999999999999999999995 999999999999999999988888
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 496 ~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 417 g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 452 (513)
T 3iyg_B 417 GKEA-VAMESYAKALRMLPTIIADNAGYDSADLVAQL 452 (513)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8776 89999999999999999999999999998764
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-88 Score=743.25 Aligned_cols=404 Identities=24% Similarity=0.367 Sum_probs=378.3
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
.+++.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++
T Consensus 15 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 88 (548)
T 1q3q_A 15 GTQRYVG--RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKT 88 (548)
T ss_dssp TCEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHH----HHHHHHHHHH
T ss_pred Ccceech--HHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchH----HHHHHHHHHh
Confidence 5778999 999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc--h-hHHHHHhhhc------
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSA------ 213 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~------ 213 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++. . +|.++|+||+
T Consensus 89 qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~ 168 (548)
T 1q3q_A 89 QDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAE 168 (548)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSCSSTTG
T ss_pred cCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999874 4 8999999875
Q ss_pred CChhhHhHHHHHHHHhhccC--C-------ceEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009575 214 GNNYEVGNMIAEAMSKVGRK--G-------VVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (532)
Q Consensus 214 ~~~~~is~li~eA~~~vg~~--g-------~I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIl 282 (532)
+++++|++|++||+.+++++ | +|+++ +|++++|| ++++||+|+++|.||+| +++++||+|+
T Consensus 169 ~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~ien~kIl 240 (548)
T 1q3q_A 169 SHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEES-ELVRGVVIDKEVVHPRM-------PKRVENAKIA 240 (548)
T ss_dssp GGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGC-EEESSEEESCCCSSTTS-------CSEESSEEEE
T ss_pred cchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccce-EEEeeEEEeccCCCCCC-------cceecCCEEE
Confidence 35799999999999999876 4 68876 99999999 99999999999999985 4678999999
Q ss_pred eeccc-------------CCCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEee
Q 009575 283 LVDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (532)
Q Consensus 283 l~d~~-------------I~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk 338 (532)
++|++ |++++++ .++++++.+.|+||||++++|+++|+++|++|+ |+||+
T Consensus 241 l~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~ 314 (548)
T 1q3q_A 241 LINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYG------IMAVR 314 (548)
T ss_dssp EECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTT------CEEEC
T ss_pred EEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCC------cEEEc
Confidence 99998 7788875 788999999999999999999999999999984 57764
Q ss_pred CCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009575 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (532)
Q Consensus 339 ~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~ 415 (532)
++++++|+|||++|||++++ +++++++++||+|+.|++. +++|++|.||++
T Consensus 315 -----~~~k~~le~ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~---------------- 368 (548)
T 1q3q_A 315 -----RVKKSDMEKLAKATGAKIVT-----NVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN---------------- 368 (548)
T ss_dssp -----SCCHHHHHHHHHHHCCCCBS-----SGGGCCGGGCEEESEEEEEEETTEEEEEEECCSS----------------
T ss_pred -----cCCHHHHHHHHHHhCCeEec-----ccccCCHHHCCCceEEEEEEecCceEEEEecCCC----------------
Confidence 78899999999999999998 5899999999999999864 889999999876
Q ss_pred hhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccC
Q 009575 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (532)
Q Consensus 416 ~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (532)
+++|||+|||+|+.+++|+||+++||+|++|+++++| +|||||++|++++++|++++.++
T Consensus 369 -------------------~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~ 429 (548)
T 1q3q_A 369 -------------------PKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV 429 (548)
T ss_dssp -------------------CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhhc
Confidence 3689999999999999999999999999999999999 99999999999999999998777
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 430 ~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 466 (548)
T 1q3q_A 430 GGKEA-LAIENFADALKIIPKTLAENAGLDTVEMLVKV 466 (548)
T ss_dssp CHHHH-HHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 67665 89999999999999999999999999998764
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-88 Score=735.34 Aligned_cols=400 Identities=20% Similarity=0.307 Sum_probs=368.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++||+++||||
T Consensus 10 ~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~~~GDGT 85 (515)
T 3iyg_H 10 IPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPA----AKTLVDIAKSQDAEVGDGT 85 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHH----HHHHHHHHHHhhceeCcch
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--c----h-hHHHHHhhhcC------Chhh
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--D----S-ELADVAAVSAG------NNYE 218 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~----~-~l~~va~ts~~------~~~~ 218 (532)
||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ + . .|.++|+||++ ++++
T Consensus 86 TtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s~~~~~ 165 (515)
T 3iyg_H 86 TSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAF 165 (515)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHhcCCcccccHHH
Confidence 99999999999999999999999999999999999999999999999985 4 3 56999999874 6799
Q ss_pred HhHHHHHHHHhhccC---CceEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc------
Q 009575 219 VGNMIAEAMSKVGRK---GVVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK------ 287 (532)
Q Consensus 219 is~li~eA~~~vg~~---g~I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~------ 287 (532)
|++|++||+.+++.+ ++|+++ +|++++|+ ++++||+|+++|.||||+++ |.+++||+|+++|++
T Consensus 166 i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds-~lv~G~~~dk~~~~p~~~~~----p~~~en~kIll~~~~Le~~k~ 240 (515)
T 3iyg_H 166 FAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEES-QLVAGVAFKKTFSYAGFEMQ----PKKYHNPMIALLNVELELKAE 240 (515)
T ss_pred HHHHHHHHHHHhcccCCcceEEEEecCCCCccce-EEEeeeEEecCccCcccccC----CccccccEEEEEccccccccc
Confidence 999999999999876 777774 68899999 99999999999999999754 457999999999995
Q ss_pred -------CCCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhh
Q 009575 288 -------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (532)
Q Consensus 288 -------I~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~ 349 (532)
|++++++ .++++++.+.|+||||++++|++.++++|.++ |+ + .++++++++
T Consensus 241 e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~---gI---~-----~v~~~~k~~ 309 (515)
T 3iyg_H 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADR---DM---F-----CAGRVPEED 309 (515)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHc---CC---c-----ccccccHHH
Confidence 6777776 56799999999999999999999888888643 33 3 456889999
Q ss_pred HHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009575 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (532)
Q Consensus 350 L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l 426 (532)
|+|||++|||++++ +++++++++||+|+.|++. ++++++|.||+++
T Consensus 310 leria~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-------------------------- 358 (515)
T 3iyg_H 310 LKRTMMACGGSIQT-----SVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA-------------------------- 358 (515)
T ss_pred HHHHHHHhCCEEee-----ccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCC--------------------------
Confidence 99999999999999 5899999999999999864 7899999998763
Q ss_pred HHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHH
Q 009575 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (532)
Q Consensus 427 ~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~ 505 (532)
..|||+|||+|+.+++|+||+++||||++|++++++ +|||||++|++++.+|++++.++++.+| +++++
T Consensus 359 ---------~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq-~~i~~ 428 (515)
T 3iyg_H 359 ---------KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQ-LLIGA 428 (515)
T ss_pred ---------ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHHHHHhcCChHHH-HHHHH
Confidence 589999999999999999999999999999999985 9999999999999999999888888777 89999
Q ss_pred HHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 506 VKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 506 ~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++||+.||++||+|||+|+.+++.+|
T Consensus 429 ~a~ALe~ip~~La~NaG~d~~~~v~~l 455 (515)
T 3iyg_H 429 YAKALEIIPRQLCDNAGFDATNILNKL 455 (515)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999998764
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-88 Score=741.47 Aligned_cols=403 Identities=26% Similarity=0.380 Sum_probs=373.8
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhcc
Q 009575 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (532)
Q Consensus 64 k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~ 143 (532)
.+..+| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++|
T Consensus 12 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~q 85 (543)
T 3ruv_A 12 MKRYMG--RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQ 85 (543)
T ss_dssp EEEEET--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHH----HHHHHHHHHHH
T ss_pred cchhcc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHH----HHHHHHHHHHH
Confidence 456677 899999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--ch-hHHHHHhhhcCC-----
Q 009575 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN----- 215 (532)
Q Consensus 144 d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~----- 215 (532)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. +|.++|+||+++
T Consensus 86 d~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~L~~va~tsl~sK~~~~ 165 (543)
T 3ruv_A 86 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEK 165 (543)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHHHHTCGGG
T ss_pred HhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcccccch
Confidence 9999999999999999999999999999999999999999999999999999999988 45 899999999864
Q ss_pred -hhhHhHHHHHHHHhhccC-Cc-----eEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecc
Q 009575 216 -NYEVGNMIAEAMSKVGRK-GV-----VTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDK 286 (532)
Q Consensus 216 -~~~is~li~eA~~~vg~~-g~-----I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~ 286 (532)
+++|++|++||+.+++++ |. |+++ +|++++|+ ++++||+|+++|.||| |+++++||+|+++|+
T Consensus 166 ~~~~i~~livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~~~n~kIll~~~ 237 (543)
T 3ruv_A 166 AKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT-ELIKGVLVDKERVSAQ-------MPKKVTDAKIALLNC 237 (543)
T ss_dssp CCHHHHHHHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGC-EEESSEEESCCCSCTT-------SCSEEEEEEEEEESS
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccceEEEEEcCCCCcccc-eeecceEEeccccCcc-------ccccccCcEEEEEcc
Confidence 799999999999999987 75 7764 78899999 8999999999999997 467899999999999
Q ss_pred c-------------CCCHHH-----------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCC
Q 009575 287 K-------------ITNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGF 342 (532)
Q Consensus 287 ~-------------I~~~~e-----------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~ 342 (532)
+ |+++++ +.++++++++.|+||||++++|+++++++|+++ +|++|+
T Consensus 238 ~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~------gI~~v~---- 307 (543)
T 3ruv_A 238 AIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKE------GIVAAR---- 307 (543)
T ss_dssp CBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHT------TCEEEC----
T ss_pred cccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHc------CcEEEe----
Confidence 5 566665 567789999999999999999999999999864 346665
Q ss_pred CccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhh
Q 009575 343 GERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419 (532)
Q Consensus 343 g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~ 419 (532)
++++++|+|||++|||++++ +++++++++||+|+.|++. +++|++|.+|+++
T Consensus 308 -~v~k~~le~ia~~tGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~------------------- 362 (543)
T 3ruv_A 308 -RVKKSDMEKLAKATGANVIA-----AIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP------------------- 362 (543)
T ss_dssp -SCCHHHHHHHHHHHCCCEES-----CGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSC-------------------
T ss_pred -eCCHHHHHHHHHHhCCceec-----ccccCCHHHCCcccEEEEEEeCCceEEEEECCCCC-------------------
Confidence 66799999999999999999 5899999999999999864 8899999999864
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChh
Q 009575 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDE 498 (532)
Q Consensus 420 ~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~e 498 (532)
..+||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.++++.+
T Consensus 363 ----------------~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~e 426 (543)
T 3ruv_A 363 ----------------KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGRE 426 (543)
T ss_dssp ----------------SSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTCCTTH
T ss_pred ----------------ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCcHHHHHHHHHHHHHhhcCChHH
Confidence 479999999999999999999999999999999999 999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 499 EKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 499 q~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 427 q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 459 (543)
T 3ruv_A 427 Q-LAVRAFADALEVIPRTLAENAGLDAIEILVKV 459 (543)
T ss_dssp H-HHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7 89999999999999999999999999998764
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-88 Score=739.35 Aligned_cols=404 Identities=23% Similarity=0.363 Sum_probs=372.5
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
..++.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++
T Consensus 13 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 86 (543)
T 1a6d_B 13 GTKRESG--KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKT 86 (543)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHH----HHHHHHHHTC
T ss_pred cchhhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchH----HHHHHHHHHh
Confidence 3568899 899999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc--h-hHHHHHhhhc------
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSA------ 213 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~------ 213 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++. . +|.++|+||+
T Consensus 87 qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~va~tsl~sKi~~ 166 (543)
T 1a6d_B 87 QDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSAS 166 (543)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHHHHHHHHTTSGGG
T ss_pred cCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999974 3 8999999774
Q ss_pred CChhhHhHHHHHHHHhhccC--Cc-------eEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009575 214 GNNYEVGNMIAEAMSKVGRK--GV-------VTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (532)
Q Consensus 214 ~~~~~is~li~eA~~~vg~~--g~-------I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIl 282 (532)
+++++|++|++||+.+++++ |. |+++ +|++++|| ++++||+|+++|.||+| +++++||+|+
T Consensus 167 ~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~ien~kIl 238 (543)
T 1a6d_B 167 VAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDT-QLINGIIVDKEKVHPGM-------PDVVKDAKIA 238 (543)
T ss_dssp GGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGC-EEESEEEESCCCSSTTS-------CSEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccce-eEEccEEEecCCCCCCC-------cceecCCeEE
Confidence 35799999999999999986 63 7775 99999999 99999999999999985 5678999999
Q ss_pred eeccc-------------CCCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEee
Q 009575 283 LVDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (532)
Q Consensus 283 l~d~~-------------I~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk 338 (532)
++|++ |++++++ .++++++.+.|+||||++++|+++|+++|++|+ |+||+
T Consensus 239 l~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~ 312 (543)
T 1a6d_B 239 LLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAG------IYAVR 312 (543)
T ss_dssp EESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTT------CEEEC
T ss_pred EEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCC------eeEec
Confidence 99998 7777775 788999999999999999999999999999984 57774
Q ss_pred CCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009575 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (532)
Q Consensus 339 ~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~ 415 (532)
++++++|+|||++|||++++ +++++++++||+|+.|++ +++++++|.||++
T Consensus 313 -----~v~k~~le~ia~~tGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~---------------- 366 (543)
T 1a6d_B 313 -----RVKKSDMDKLAKATGASIVS-----TIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKN---------------- 366 (543)
T ss_dssp -----SCCHHHHHHHHHHHTCCEES-----CGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESS----------------
T ss_pred -----cCCHHHHHHHHHHhCCceec-----ccccCCHHHCCCceEEEEEEecCceEEEEecCCC----------------
Confidence 78899999999999999998 589999999999999986 4889999999876
Q ss_pred hhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccC
Q 009575 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (532)
Q Consensus 416 ~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (532)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.++
T Consensus 367 -------------------~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~ 427 (543)
T 1a6d_B 367 -------------------PKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKI 427 (543)
T ss_dssp -------------------SSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHT
T ss_pred -------------------CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHCCCccCCccHHHHHHHHHHHHHhhhc
Confidence 3689999999999999999999999999999999999 99999999999999999999888
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 428 ~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 464 (543)
T 1a6d_B 428 GGRQQ-LAIEKFADAIEEIPRALAENAGLDPIDILLKL 464 (543)
T ss_dssp CSSHH-HHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 88776 89999999999999999999999999998764
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-88 Score=740.86 Aligned_cols=403 Identities=23% Similarity=0.362 Sum_probs=374.8
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
..++.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++
T Consensus 14 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 87 (545)
T 1a6d_A 14 GTQREQG--KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT----AKMIVEVSKA 87 (545)
T ss_dssp ---CEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHH----HHHHHGGGGC
T ss_pred cchhhch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchH----HHHHHHHHHh
Confidence 3568888 999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC-ch-hHHHHHhhhc------C
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DS-ELADVAAVSA------G 214 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~-~~-~l~~va~ts~------~ 214 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++| + +. +|.++|+||+ +
T Consensus 88 qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-~~~~~~l~~va~tsl~sKi~~~ 166 (545)
T 1a6d_A 88 QDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-STDDATLRKIALTALSGKNTGL 166 (545)
T ss_dssp TTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-CCCHHHHHHHHHHHTTTSSCCS
T ss_pred cCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999 7 45 8999999875 4
Q ss_pred ChhhHhHHHHHHHHhhccC---------CceEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEee
Q 009575 215 NNYEVGNMIAEAMSKVGRK---------GVVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLL 283 (532)
Q Consensus 215 ~~~~is~li~eA~~~vg~~---------g~I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll 283 (532)
++++|++|++||+.+++++ ++|+++ +|++++|| ++++||+|+++|.||+| +++++||+|++
T Consensus 167 ~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~ien~kIll 238 (545)
T 1a6d_A 167 SNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDT-QFISGIVIDKEKVHSKM-------PDVVKNAKIAL 238 (545)
T ss_dssp THHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTC-EEESEEEESCCCSCTTS-------CSEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceee-EEEeeEEEeccCCCCCC-------cceecCCEEEE
Confidence 6799999999999999876 378886 99999999 99999999999999985 46789999999
Q ss_pred eccc-------------CCCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeC
Q 009575 284 VDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (532)
Q Consensus 284 ~d~~-------------I~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~ 339 (532)
+|++ |++++++ .++++++.+.|+||||++++|+++|+++|++|+ |+||+
T Consensus 239 ~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~- 311 (545)
T 1a6d_A 239 IDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG------IYAVR- 311 (545)
T ss_dssp ECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHT------CEEEC-
T ss_pred EecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCC------eeEec-
Confidence 9998 6777765 788999999999999999999999999999984 57774
Q ss_pred CCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHh
Q 009575 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (532)
Q Consensus 340 ~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~~ 416 (532)
++++++|+|||++|||++++ +++++++++||+|+.|++. +++|++|.+|++
T Consensus 312 ----~~~k~~le~ia~~tGa~iis-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~----------------- 365 (545)
T 1a6d_A 312 ----RVKKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN----------------- 365 (545)
T ss_dssp ----SCCHHHHHHHHHHHCCCEES-----SGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESC-----------------
T ss_pred ----cCCHHHHHHHHHHhCCeeec-----ccccCCHHHCCCceEEEEEEecCceEEEEecCCC-----------------
Confidence 78899999999999999998 5899999999999999864 789999999876
Q ss_pred hhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCC
Q 009575 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (532)
Q Consensus 417 ~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~ 495 (532)
+++|||+|||+|+.+++|+||+++||+|++|+++++| +|||||++|++++++|++++.+++
T Consensus 366 ------------------~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~ 427 (545)
T 1a6d_A 366 ------------------PKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVG 427 (545)
T ss_dssp ------------------SSCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTSC
T ss_pred ------------------CceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhhccC
Confidence 3699999999999999999999999999999999999 999999999999999999988777
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 496 ~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 428 g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 463 (545)
T 1a6d_A 428 GREQ-LAIEAFAKALEIIPRTLAENAGIDPINTLIKL 463 (545)
T ss_dssp HHHH-HHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHH
T ss_pred ccHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7665 89999999999999999999999999998764
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-89 Score=744.86 Aligned_cols=408 Identities=21% Similarity=0.307 Sum_probs=374.9
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
.|+..|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++
T Consensus 11 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----akll~e~a~~ 84 (528)
T 3p9d_D 11 FKNKEKP--QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPV----ARMLVEVSAA 84 (528)
T ss_dssp SCBCCCH--HHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTT----HHHHHHHHHH
T ss_pred cchhcch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHH----HHHHHHHHHH
Confidence 5888999 999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--ch-hHHHHHhhhcCC----
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN---- 215 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~---- 215 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. +|.++|+||+++
T Consensus 85 qd~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~l~~va~tsl~sK~~~ 164 (528)
T 3p9d_D 85 QDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVS 164 (528)
T ss_dssp HHHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCHHHHHHHHHHHSCSSSCS
T ss_pred hhhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999998 45 899999999874
Q ss_pred --hhhHhHHHHHHHHhhcc--CCceEE-------ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009575 216 --NYEVGNMIAEAMSKVGR--KGVVTL-------EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (532)
Q Consensus 216 --~~~is~li~eA~~~vg~--~g~I~v-------~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~ 284 (532)
+++|++|++||+.++++ +|.|.+ .+|++++|| ++++||+|+++|.||+| |+++++||+|+++
T Consensus 165 ~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~~~~------m~~~ien~kIll~ 237 (528)
T 3p9d_D 165 QYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDT-EMIDGVVLTQTAIKSAG------GPTRKEKAKIGLI 237 (528)
T ss_dssp TTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCC-EEESSCBCCCCCCCSSS------CCSEESSEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccce-EEEeeeEEeecccCccc------CcccccCceEEEE
Confidence 79999999999999987 454433 359999999 99999999999999986 7889999999999
Q ss_pred cccCC-------------CHHH-----------HHHHHHHHHhcCCCeEEEcccc-----cHHHHHHHHHhhhcccceEE
Q 009575 285 DKKIT-------------NARD-----------LINVLEDAIRGAYPILIIAEDI-----EQEALATLVVNKLRGALKIA 335 (532)
Q Consensus 285 d~~I~-------------~~~e-----------l~~~le~i~~~g~~lvIia~~I-----~~~al~~L~~n~~~g~~~i~ 335 (532)
|++|+ ++++ +.++++++.+.|+||||++++| +++++++|.+| +|+
T Consensus 238 ~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~------~I~ 311 (528)
T 3p9d_D 238 QFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKL------NIM 311 (528)
T ss_dssp CCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTT------SCC
T ss_pred eccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHc------CcE
Confidence 99875 4443 6888999999999999999999 99999999876 467
Q ss_pred EeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHH
Q 009575 336 ALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRT 412 (532)
Q Consensus 336 aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~ 412 (532)
||+ ++++++|+|||++|||+++++ ++++++++||+|+.|++ +++++++|.+|....
T Consensus 312 av~-----~~~k~~le~ia~~tGa~ii~~-----~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~----------- 370 (528)
T 3p9d_D 312 VVK-----DIEREEIEFLSKGLGCKPIAD-----IELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNN----------- 370 (528)
T ss_dssp EEE-----CCCTHHHHHHHHHHTCCCCSC-----STTCCSSSEEEESCEECCEETTEECCBCTTBCCGG-----------
T ss_pred EEE-----eCCHHHHHHHHHHHCCEEecc-----cccCCHHHCCcccEEEEEEECCEEEEEEEcccccC-----------
Confidence 777 667899999999999999994 78899999999999984 567888898876210
Q ss_pred HHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHh
Q 009575 413 LIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIK 491 (532)
Q Consensus 413 ~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~ 491 (532)
.+++|||+|||+|+.+++|+||+++||+|++|+++++| +|||||++|++++.+|++++
T Consensus 371 ---------------------~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~ 429 (528)
T 3p9d_D 371 ---------------------ARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEA 429 (528)
T ss_dssp ---------------------GCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHHHCC
T ss_pred ---------------------CCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHHh
Confidence 15799999999999999999999999999999999999 99999999999999999998
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 492 ETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 492 ~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
.++++.+| +++++|++||+.||++||+|||+||.+++.+|
T Consensus 430 ~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 469 (528)
T 3p9d_D 430 RSMEGVQA-FIWQEFASALEVIPTTLAENAGLNSIKVVTEL 469 (528)
T ss_dssp TTSCHHHH-TTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHH
T ss_pred hccChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77777666 89999999999999999999999999998764
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-87 Score=731.20 Aligned_cols=408 Identities=22% Similarity=0.302 Sum_probs=373.1
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhcc
Q 009575 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (532)
Q Consensus 64 k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~ 143 (532)
.+-.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++|
T Consensus 3 ~~~~~g--~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~----akll~~~a~~q 76 (529)
T 3iyg_A 3 GDRSTG--EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKVLCELADLQ 76 (529)
T ss_pred cchhch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChH----HHHHHHHHHHh
Confidence 345677 899999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh-cccccC--ch-hHHHHHhhhcC-----
Q 009575 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE--DS-ELADVAAVSAG----- 214 (532)
Q Consensus 144 d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~-~s~~v~--~~-~l~~va~ts~~----- 214 (532)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++ ++++++ +. +|.++|+||++
T Consensus 77 d~e~GDGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~~~ 156 (529)
T 3iyg_A 77 DKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIG 156 (529)
T ss_pred hhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999 999987 44 89999999975
Q ss_pred -ChhhHhHHHHHHHHhhc---cCC-----c--eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeE
Q 009575 215 -NNYEVGNMIAEAMSKVG---RKG-----V--VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKL 281 (532)
Q Consensus 215 -~~~~is~li~eA~~~vg---~~g-----~--I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkI 281 (532)
++++|++|++||+.+++ ++| + |++ .+|++++|| ++++||+|+++|.||+ |+..++||||
T Consensus 157 ~~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kI 228 (529)
T 3iyg_A 157 INGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMES-MLINGYALNCVVGSQG-------MPKRIVNAKI 228 (529)
T ss_pred ccHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccce-EEEeeeEEecCccccc-------CCcccCCceE
Confidence 57999999999999998 344 2 554 589999999 8999999999999997 4557899999
Q ss_pred eeecccC-------------CCHHH-----------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEe
Q 009575 282 LLVDKKI-------------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAAL 337 (532)
Q Consensus 282 ll~d~~I-------------~~~~e-----------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aV 337 (532)
+++|+++ +++++ +.++++++++.|+||||++++|+++++++|++|+ |+||
T Consensus 229 lll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~g------I~av 302 (529)
T 3iyg_A 229 ACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAG------AMAV 302 (529)
T ss_pred EEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC------Ccee
Confidence 9999975 34433 5678899999999999999999999999999984 5666
Q ss_pred eCCCCCccchhhHHHHHHHhCCeEeecCCCcc-ccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHH
Q 009575 338 KAPGFGERKSQYLDDIAILTGGTVIRDEVGLA-LDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTL 413 (532)
Q Consensus 338 k~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~-l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~ 413 (532)
+ ++++++|+|||++|||+++++..+++ .+++++++||+|+.|+ ++++++++|.||+++
T Consensus 303 ~-----~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~------------- 364 (529)
T 3iyg_A 303 R-----RVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKAR------------- 364 (529)
T ss_pred c-----cCCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCC-------------
Confidence 6 67899999999999999999765554 3557789999999998 789999999998763
Q ss_pred HHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhc
Q 009575 414 IENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKE 492 (532)
Q Consensus 414 l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~ 492 (532)
++|||+|||+|+.+++|.||+++||+|++|+++++| +||||||+||+++.+|++++.
T Consensus 365 ----------------------~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~ 422 (529)
T 3iyg_A 365 ----------------------TSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYAT 422 (529)
T ss_pred ----------------------ceEEEEECCchHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999999999 999999999999999999998
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 493 TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 493 ~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 423 ~~~g~eq-~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l 461 (529)
T 3iyg_A 423 SMGSREQ-LAIAEFARSLLVIPNTLAVNAAQDSTDLVAKL 461 (529)
T ss_pred hcCChHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8888887 89999999999999999999999999998764
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-86 Score=726.38 Aligned_cols=403 Identities=22% Similarity=0.338 Sum_probs=368.1
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhcc
Q 009575 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (532)
Q Consensus 64 k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~ 143 (532)
++-.|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++|
T Consensus 3 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~----Akll~~~a~~q 76 (515)
T 3iyg_E 3 KSRLMG--LEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI----AKLMVELSKSQ 76 (515)
T ss_pred chhhch--HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHH----HHHHHHHHHHh
Confidence 445688 999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc----h-hHHHHHhhhcCC---
Q 009575 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED----S-ELADVAAVSAGN--- 215 (532)
Q Consensus 144 d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~----~-~l~~va~ts~~~--- 215 (532)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++. . +|.++|+||+++
T Consensus 77 d~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i 156 (515)
T 3iyg_E 77 DDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVV 156 (515)
T ss_pred hhhhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999998854 3 899999999875
Q ss_pred ---hhhHhHHHHHHHHhhccC-------CceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEee
Q 009575 216 ---NYEVGNMIAEAMSKVGRK-------GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLL 283 (532)
Q Consensus 216 ---~~~is~li~eA~~~vg~~-------g~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll 283 (532)
.+.|+++++||+..+.+. +.|++ .+|++++|+ ++++||+|+++|.||||++ .++||+|++
T Consensus 157 ~~~~~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds-~lv~G~~~dk~~~~~~m~~-------~~~~~kIal 228 (515)
T 3iyg_E 157 NSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDT-KLIKGVIVDKDFSHPQMPK-------QVEDAKIAI 228 (515)
T ss_pred hHHHHHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccc-eEEeeEEEecccccccccc-------cCCCceEEE
Confidence 578999999999998652 34555 579999999 9999999999999998654 467888888
Q ss_pred eccc-------------CCCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeC
Q 009575 284 VDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (532)
Q Consensus 284 ~d~~-------------I~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~ 339 (532)
++++ |++++++ .++++++.+.|+||||++++|+++|+++|++|++ .+++
T Consensus 229 l~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I------~~v~- 301 (515)
T 3iyg_E 229 LTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDL------PAVR- 301 (515)
T ss_pred EcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCC------EEEe-
Confidence 7775 4566665 6789999999999999999999999999999854 5555
Q ss_pred CCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE-----eCceEEEEcCCCChhhHHHHHHHHHHHH
Q 009575 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL-----TKDTTTIVGDGSTQDAVSKRVAQIRTLI 414 (532)
Q Consensus 340 ~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i-----~~~~~~~i~g~~~~~~i~~r~~~i~~~l 414 (532)
++++++|+|||++|||++++ +++++++++||+|++|++ +++++++|.||+++
T Consensus 302 ----~v~k~~le~ia~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~-------------- 358 (515)
T 3iyg_E 302 ----WVGGPEIELIAIATGGRIVP-----RFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS-------------- 358 (515)
T ss_pred ----ccCHHHHHHHHHHhCCEEec-----ccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCC--------------
Confidence 44589999999999999999 589999999999999987 45899999999863
Q ss_pred HhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhcc
Q 009575 415 ENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKET 493 (532)
Q Consensus 415 ~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~ 493 (532)
..|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.+
T Consensus 359 ---------------------~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~~~~~~ 417 (515)
T 3iyg_E 359 ---------------------RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADK 417 (515)
T ss_pred ---------------------ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999 9999999999999999999888
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 494 LDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 494 ~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 418 ~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 455 (515)
T 3iyg_E 418 CPTLEQ-YAMRAFADALEVIPMALAENSGMNPIQTMTEV 455 (515)
T ss_pred CCcHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 888777 89999999999999999999999999998764
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-86 Score=725.27 Aligned_cols=402 Identities=22% Similarity=0.308 Sum_probs=367.9
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccc
Q 009575 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (532)
Q Consensus 65 ~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d 144 (532)
+-.+| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++||
T Consensus 5 ~~~~g--~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----akll~~~a~~qd 78 (518)
T 3iyg_D 5 DRDKP--AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPA----ARMLVELSKAQD 78 (518)
T ss_pred cchhh--HHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHH----HHHHHHHHHHhh
Confidence 33456 789999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC--ch-hHHHHHhhhcCCh-----
Q 009575 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGNN----- 216 (532)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~~----- 216 (532)
+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. +|.++|+||++++
T Consensus 79 ~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~vA~tsl~sK~~~~~ 158 (518)
T 3iyg_D 79 IEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATSLNSKVVSQY 158 (518)
T ss_pred hhhCCCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCChHHHHHHhHhhhccccchhh
Confidence 999999999999999999999999999999999999999999999999999999998 44 8999999999874
Q ss_pred -hhHhHHHHHHHHhhcc---CCc-----eEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeec
Q 009575 217 -YEVGNMIAEAMSKVGR---KGV-----VTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD 285 (532)
Q Consensus 217 -~~is~li~eA~~~vg~---~g~-----I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d 285 (532)
++|++|++||+.++++ +|. |+++ +|+++.|+ ++++||+|+++|.| . ||..++||+|++++
T Consensus 159 ~~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds-~lv~G~~~dk~~~~-~-------mp~~i~n~kIlll~ 229 (518)
T 3iyg_D 159 SSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDC-ELVEGLVLTQKVAN-S-------GITRVEKAKIGLIQ 229 (518)
T ss_pred HHHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhh-eEeccEEEeccccc-C-------CCccccCceEEEEE
Confidence 8999999999999985 554 6664 78999999 89999999999987 2 45567889999888
Q ss_pred ccC-------------CCHH-----------HHHHHHHHHHhcCCCeEEE-----cccccHHHHHHHHHhhhcccceEEE
Q 009575 286 KKI-------------TNAR-----------DLINVLEDAIRGAYPILII-----AEDIEQEALATLVVNKLRGALKIAA 336 (532)
Q Consensus 286 ~~I-------------~~~~-----------el~~~le~i~~~g~~lvIi-----a~~I~~~al~~L~~n~~~g~~~i~a 336 (532)
+++ ++++ ++.++++++.+.|+||||+ +++|+++|+++|+++ +|+|
T Consensus 230 ~~Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~------~I~a 303 (518)
T 3iyg_D 230 FCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKM------KIMV 303 (518)
T ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHc------CcEE
Confidence 864 4454 3678899999999999999 899999999999987 5799
Q ss_pred eeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eC-ceEEEEcCCCChhhHHHHHHHHHH
Q 009575 337 LKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TK-DTTTIVGDGSTQDAVSKRVAQIRT 412 (532)
Q Consensus 337 Vk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~-~~~~~i~g~~~~~~i~~r~~~i~~ 412 (532)
|+.|+ +.+|+|||++|||++++ +++++++++||+|+.|++ ++ +++++|++|++
T Consensus 304 v~~~~-----~~~le~ia~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~------------- 360 (518)
T 3iyg_D 304 VKDIE-----REDIEFICKTIGTKPVA-----HVDQFTADMLGSAELAEEVSLNGSGKLIKITGCAS------------- 360 (518)
T ss_pred EecCC-----HHHHHHHHHHhCCEEec-----ccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCC-------------
Confidence 99887 47899999999999999 489999999999999986 34 68899999864
Q ss_pred HHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHh
Q 009575 413 LIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIK 491 (532)
Q Consensus 413 ~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~ 491 (532)
++++|||+|||+|+.+++|+||+++||+|++|+++++| +|||||++|++++.+|++++
T Consensus 361 ---------------------~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~ 419 (518)
T 3iyg_D 361 ---------------------PGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYS 419 (518)
T ss_pred ---------------------CCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999 99999999999999999998
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 492 ETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 492 ~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
.++++.+| +++++|++||+.||++||+|||+||.+++.+|
T Consensus 420 ~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 459 (518)
T 3iyg_D 420 RTLSGMES-YCIRAFADAMEVIPSTLAENAGLNPISTVTEL 459 (518)
T ss_pred hcCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 88888776 89999999999999999999999999998764
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-88 Score=738.06 Aligned_cols=403 Identities=23% Similarity=0.335 Sum_probs=371.6
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeec-CCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLES-KYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~-~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~ 141 (532)
.+++.|| .++|..|+.|++.|+++|++||||+||||||++ ++|+|+|||||+||||+|+++||. |||++++|+
T Consensus 9 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~----Akll~e~a~ 82 (527)
T 3p9d_B 9 QVTEERA--ENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPA----AKVLVNISK 82 (527)
T ss_dssp CEEEEES--HHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHH----HHHHHHHHH
T ss_pred cchhhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHH----HHHHHHHHH
Confidence 5789999 999999999999999999999999999999999 899999999999999999999997 999999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHhcccccCc-----h-hHHHHHhhhcC
Q 009575 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAA-GANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAG 214 (532)
Q Consensus 142 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~-Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~ 214 (532)
+||+++||||||+||||++||+++.+++++ |+||+.|++||++|++.++++|+++++++++ . +|.+||+||++
T Consensus 83 ~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~vA~tSl~ 162 (527)
T 3p9d_B 83 VQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLS 162 (527)
T ss_dssp HHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHhccc
Confidence 999999999999999999999999999999 9999999999999999999999999999875 4 89999999987
Q ss_pred C------hhhHhHHHHHHHHhhccCC---ceEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEee
Q 009575 215 N------NYEVGNMIAEAMSKVGRKG---VVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLL 283 (532)
Q Consensus 215 ~------~~~is~li~eA~~~vg~~g---~I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll 283 (532)
+ +++|++|++||+.+++++| +|+++ +|++++|+ ++++||+|+++|.||| |..++||+|++
T Consensus 163 sK~~~~~~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds-~lv~G~~~dk~~~~~~--------p~~~~n~kIll 233 (527)
T 3p9d_B 163 SKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDS-FLDEGFILAKKFGNNQ--------PKRIENAKILI 233 (527)
T ss_dssp TSGGGGGHHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCC-CEESSCCCSCCCSSSC--------CSCCSSCEEEE
T ss_pred cCcccchHHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCcccc-EEEEeEEEecccCCCC--------CeeeecceEEE
Confidence 5 7899999999999999987 77775 69999999 9999999999999996 23468999999
Q ss_pred ecccC--------------CCHHHH-----------HHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEee
Q 009575 284 VDKKI--------------TNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (532)
Q Consensus 284 ~d~~I--------------~~~~el-----------~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk 338 (532)
++++| ++++++ .+.++++++.|+||||++++|+++++++|.++ +|++|+
T Consensus 234 l~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~------~i~av~ 307 (527)
T 3p9d_B 234 ANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDL------GINSIE 307 (527)
T ss_dssp ECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHT------CBCCCC
T ss_pred eccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHC------CCEEEe
Confidence 88763 455554 57889999999999999999999999999987 467887
Q ss_pred CCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009575 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (532)
Q Consensus 339 ~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~ 415 (532)
.|+ +.+|+|||++|||++++ +++++++++||+|+.|+ ++++++++|.||++
T Consensus 308 ~~~-----~~dle~ia~~tGa~iv~-----~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~---------------- 361 (527)
T 3p9d_B 308 HAD-----FEGVERLALVTGGEVVS-----TFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKA---------------- 361 (527)
T ss_dssp CCH-----HHHHHHHHHHTCCCCCS-----TTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCC----------------
T ss_pred cCC-----HHHHHHHHHHhCCEEec-----chhhCCHHHCCCCcEEEEEEecceEEEEEECCCC----------------
Confidence 655 67899999999999999 48899999999999998 57889999999875
Q ss_pred hhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccC
Q 009575 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (532)
Q Consensus 416 ~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (532)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.++
T Consensus 362 -------------------~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~ 422 (527)
T 3p9d_B 362 -------------------GEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNI 422 (527)
T ss_dssp -------------------SCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCCCEEETTTHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999999999 99999999999999999998877
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 423 ~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 459 (527)
T 3p9d_B 423 DGKKS-LAVEAFARALRQLPTILADNAGFDSSELVSKL 459 (527)
T ss_dssp CSHHH-HHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 78776 89999999999999999999999999998764
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-88 Score=739.43 Aligned_cols=405 Identities=19% Similarity=0.291 Sum_probs=370.9
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhcc
Q 009575 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (532)
Q Consensus 64 k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~ 143 (532)
.+-.+| .+++..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++|
T Consensus 17 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~----Akll~e~a~~q 90 (550)
T 3p9d_G 17 TDASQG--KGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPA----AKTLVDISRAQ 90 (550)
T ss_dssp CCEEES--HHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHH----HHHHHHHHHHH
T ss_pred cchhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHH----HHHHHHHHHHh
Confidence 456678 899999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc-----h-hHHHHHhhhcC---
Q 009575 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAG--- 214 (532)
Q Consensus 144 d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~--- 214 (532)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++. . +|.++|+||++
T Consensus 91 d~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~L~~vA~tsl~sK~ 170 (550)
T 3p9d_G 91 DAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKL 170 (550)
T ss_dssp HTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCCC------CHHHHHHHHHHHTT
T ss_pred hhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999863 4 79999999864
Q ss_pred ---ChhhHhHHHHHHHHhhcc-C------CceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009575 215 ---NNYEVGNMIAEAMSKVGR-K------GVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (532)
Q Consensus 215 ---~~~~is~li~eA~~~vg~-~------g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~ 284 (532)
++++|++|++||+.++++ + +++++ +|++++|| ++++||+|+++|.||||.+ |+..++||+|+++
T Consensus 171 ~~~~~~~i~~livdAv~~V~~~~~dl~~I~Vikv-~Gg~~~ds-~lv~G~~~dk~~~s~yf~~----~~~~~en~kIll~ 244 (550)
T 3p9d_G 171 IHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKI-PGGAMEES-LFINGVAFKKTFSYAGFEQ----QPKKFNNPKILSL 244 (550)
T ss_dssp TGGGHHHHHHHHHHHHHHCCSSSCCGGGCCCCBC-CSSCGGGC-CCCSSEEECCCSSCTTCSC----SCSCCSSCCEEEE
T ss_pred ccccHhHHHHHHHHHHHHhCccccCchheeEEEe-cCCCccce-eEEeeEEEecccccccccc----CcccccCceEEEe
Confidence 589999999999999995 3 56665 59999999 9999999999999999975 5556999999999
Q ss_pred ccc-------------CCCHHHHH-----------HHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCC
Q 009575 285 DKK-------------ITNARDLI-----------NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (532)
Q Consensus 285 d~~-------------I~~~~el~-----------~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~ 340 (532)
|++ |++++++. ++++++++.|++|||++++|++.++++|.++ +|++
T Consensus 245 ~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~------gI~~---- 314 (550)
T 3p9d_G 245 NVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADR------NIFC---- 314 (550)
T ss_dssp CSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGG------TCEE----
T ss_pred ccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHc------CCcc----
Confidence 998 45665554 4688899999999999999999998887654 3344
Q ss_pred CCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009575 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (532)
Q Consensus 341 ~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~ 417 (532)
++++++++|++||++|||++++ +++++++++||+|+.|++ +++++++|.||+++
T Consensus 315 -v~~v~k~~lerIa~~tGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~----------------- 371 (550)
T 3p9d_G 315 -AGRVSADDMNRVIQAVGGSIQS-----TTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQA----------------- 371 (550)
T ss_dssp -EECCCTTHHHHHHHHTCCCCBS-----SGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTC-----------------
T ss_pred -ccCcCHHHHHHHHHHhCCceec-----chhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCC-----------------
Confidence 4578899999999999999999 589999999999999986 68899999998753
Q ss_pred hhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCC
Q 009575 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDN 496 (532)
Q Consensus 418 ~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~ 496 (532)
++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.++++
T Consensus 372 ------------------~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g 433 (550)
T 3p9d_G 372 ------------------KTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAG 433 (550)
T ss_dssp ------------------CCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCS
T ss_pred ------------------ceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCCh
Confidence 689999999999999999999999999999999999 9999999999999999999888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 497 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 497 ~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 434 ~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 468 (550)
T 3p9d_G 434 KQQ-MIINAFAKALEVIPRQLCENAGFDAIEILNKL 468 (550)
T ss_dssp TTH-HHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 877 89999999999999999999999999998764
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-86 Score=731.43 Aligned_cols=410 Identities=23% Similarity=0.349 Sum_probs=370.7
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
.++..|| .++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++
T Consensus 37 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 110 (562)
T 3p9d_E 37 NKKRQHG--LEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEI----AKLLVQLSKS 110 (562)
T ss_dssp CCSCSHH--HHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHH----HHHHHHHHHH
T ss_pred cceecch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHH----HHHHHHHHHH
Confidence 3678899 999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc-------hhHHHHHhhhcCC
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-------SELADVAAVSAGN 215 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-------~~l~~va~ts~~~ 215 (532)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++. ++|.++|+||+++
T Consensus 111 qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e~L~~vA~tSl~s 190 (562)
T 3p9d_E 111 QDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGS 190 (562)
T ss_dssp HHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHHHHHHHHHHHHSS
T ss_pred HHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999998864 2699999999864
Q ss_pred ------hhhHhHHHHHHHHhhccC-------CceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeecccee
Q 009575 216 ------NYEVGNMIAEAMSKVGRK-------GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCK 280 (532)
Q Consensus 216 ------~~~is~li~eA~~~vg~~-------g~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npk 280 (532)
.++|+++++||+..+.+. +.|++ .+|++++|| ++++||+|+++|.||+|+++.. .+..++||+
T Consensus 191 K~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds-~lveGmv~dk~~~sp~m~~~~~-~~~~~~~~k 268 (562)
T 3p9d_E 191 KIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDS-KLINGVILDKDFSHPQMPKCVL-PKEGSDGVK 268 (562)
T ss_dssp STTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGC-EEESSEEESSCCCTTSCCC------TTCSSCE
T ss_pred chhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhh-ceeeeEEEecCCCCCCcCcccc-cccccccce
Confidence 578999999999998752 34554 579999999 9999999999999999876432 122347999
Q ss_pred Eeeeccc-------------CCCHHH-----------HHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEE
Q 009575 281 LLLVDKK-------------ITNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAA 336 (532)
Q Consensus 281 Ill~d~~-------------I~~~~e-----------l~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~a 336 (532)
|++++++ |+++++ +.++++++++.|+||||++++|+++++++|++|++ .+
T Consensus 269 Iall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I------~~ 342 (562)
T 3p9d_E 269 LAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDL------PA 342 (562)
T ss_dssp ECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTC------CC
T ss_pred EEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCC------EE
Confidence 9998876 345555 57889999999999999999999999999999865 45
Q ss_pred eeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE-----eCceEEEEcCCCChhhHHHHHHHHH
Q 009575 337 LKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL-----TKDTTTIVGDGSTQDAVSKRVAQIR 411 (532)
Q Consensus 337 Vk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i-----~~~~~~~i~g~~~~~~i~~r~~~i~ 411 (532)
|+ ++++++|+|||++|||++++ +++++++++||+|+.|++ +++++++|.||+++
T Consensus 343 v~-----~v~k~~le~ia~~TGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~----------- 401 (562)
T 3p9d_E 343 VR-----WVGGQELEHIAISTNGRIVP-----RFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKET----------- 401 (562)
T ss_dssp EE-----CCCTTTHHHHHHHHCCCEEE-----SSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCC-----------
T ss_pred Ee-----ccCHHHHHHHHHHhCCEEEe-----ccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCC-----------
Confidence 55 44689999999999999999 589999999999999997 36899999999863
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHH
Q 009575 412 TLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAI 490 (532)
Q Consensus 412 ~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~ 490 (532)
..|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++++|+++
T Consensus 402 ------------------------~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~ 457 (562)
T 3p9d_E 402 ------------------------KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEE 457 (562)
T ss_dssp ------------------------SCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHH
T ss_pred ------------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999 9999999999999999999
Q ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 491 KETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 491 ~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
+.++++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 458 ~~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 498 (562)
T 3p9d_E 458 ADKQRGIDQ-YAFRGFAQALDTIPMTLAENSGLDPIGTLSTL 498 (562)
T ss_dssp HHTTCTTHH-HHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHH
T ss_pred hccCccHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888888777 89999999999999999999999999998764
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-85 Score=717.03 Aligned_cols=396 Identities=20% Similarity=0.287 Sum_probs=361.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
+++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++||+++||||
T Consensus 10 ~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~~~GDGT 85 (512)
T 3iyg_Q 10 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPA----AKMIVMASHMQEQEVGDGT 85 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHH----HHHHHHHHHHhhhhhCCCh
Confidence 589999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhc----ccccCch-hHHHHHhhhcCC-----hhhHhH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQM----SKEVEDS-ELADVAAVSAGN-----NYEVGN 221 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~----s~~v~~~-~l~~va~ts~~~-----~~~is~ 221 (532)
||+||||++||+++.+++++|+||+.|++||++|++.++++|+++ ++++++. +|.++|+||+++ +++|++
T Consensus 86 TtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~ 165 (512)
T 3iyg_Q 86 NFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAK 165 (512)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCCccchHHHHH
Confidence 999999999999999999999999999999999999999999998 5666666 899999999886 799999
Q ss_pred HHHHHHHhhccC-CceEE-------ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc------
Q 009575 222 MIAEAMSKVGRK-GVVTL-------EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK------ 287 (532)
Q Consensus 222 li~eA~~~vg~~-g~I~v-------~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~------ 287 (532)
|++||+.+++++ |.|.+ .+|+++.|+ ++++||+|+++|.+ |+..++||+|++++++
T Consensus 166 livdAv~~V~~~~~~i~v~~I~i~k~~Ggs~~ds-~lv~G~~~dk~~~~---------~~~~~~n~kI~ll~~~le~~~~ 235 (512)
T 3iyg_Q 166 LIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSS-SVLHGMVFKKETEG---------DVTSVKDAKIAVYSCPFDGMIT 235 (512)
T ss_pred HHHHHHHHHhccCCcccHhHeeEeeccCCCcccc-eEEeeEEEecCcCC---------CCcccccCceEEEecccccccc
Confidence 999999999986 44433 369999888 99999999999865 3445788999988876
Q ss_pred -------CCCHHHHHHH-------HH----HHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhh
Q 009575 288 -------ITNARDLINV-------LE----DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (532)
Q Consensus 288 -------I~~~~el~~~-------le----~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~ 349 (532)
|++++++.++ ++ ++++.|+||||++++|++.++++|.++ +|+||+.|+ +.+
T Consensus 236 e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~------~I~av~~~~-----~~d 304 (512)
T 3iyg_Q 236 ETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKY------NIMLVRLNS-----KWD 304 (512)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHC------CeEEEEeCC-----HHH
Confidence 4667777665 44 889999999999999999999988653 689999887 467
Q ss_pred HHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009575 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (532)
Q Consensus 350 L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l 426 (532)
|+|||++|||++++ +++++++++||+|++|++ +++++++|.+|+.
T Consensus 305 le~ia~~tGa~iis-----~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~--------------------------- 352 (512)
T 3iyg_Q 305 LRRLCKTVGATALP-----RLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKE--------------------------- 352 (512)
T ss_pred HHHHHHHhCCEEec-----ccccCCHHHCCcccEEEEEEeCCeEEEEEEcccC---------------------------
Confidence 99999999999999 589999999999999986 4668999998753
Q ss_pred HHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHH
Q 009575 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (532)
Q Consensus 427 ~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~ 505 (532)
++++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.++++.+| +++++
T Consensus 353 -------~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq-~~i~~ 424 (512)
T 3iyg_Q 353 -------DGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQ-YAIKK 424 (512)
T ss_pred -------CCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHH-HHHHH
Confidence 35799999999999999999999999999999999999 9999999999999999999888888777 89999
Q ss_pred HHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 506 VKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 506 ~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++||+.||++||+|||+||.+++.+|
T Consensus 425 ~a~ALe~ip~~La~NaG~d~~~~v~~l 451 (512)
T 3iyg_Q 425 FAEAFEAIPRALAENSGVKANEVISKL 451 (512)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999999764
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-85 Score=714.48 Aligned_cols=397 Identities=20% Similarity=0.309 Sum_probs=365.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.++|..|+.|++.|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~e~GDGT 83 (515)
T 3iyg_G 8 RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPA----AKSMIEISRTQDEEVGDGT 83 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHH----HHHHHHHHHHhhhhhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc--h-hHHHHHhhhcCC------hhhHhHH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAGN------NYEVGNM 222 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~~------~~~is~l 222 (532)
||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++. . +|.++|+||+++ .++++++
T Consensus 84 TtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va~tsl~sK~i~~~~~~~~~i 163 (515)
T 3iyg_G 84 TSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNI 163 (515)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875 3 899999999863 4678899
Q ss_pred HHHHHHhhccC--C--------ceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecc----
Q 009575 223 IAEAMSKVGRK--G--------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDK---- 286 (532)
Q Consensus 223 i~eA~~~vg~~--g--------~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~---- 286 (532)
++||+..+.++ + +|++ .+|++++|| ++++||+|+++|.||. |+++++||+|+++|+
T Consensus 164 ~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIll~~~~Le~ 235 (515)
T 3iyg_G 164 ALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDS-CVLRGVMINKDVTHPR-------MRRYIKNPRIVLLDSSLEY 235 (515)
T ss_pred HHHHHHhcccccCCCcccchhheeEEEEecCCCcccc-eEEeeEEEeCCCCCCC-------CcceeeeeEEEEEcccccc
Confidence 99999998732 2 1444 589999999 8999999999999984 778899999999999
Q ss_pred ---------cCCCHHHHHHHHH-----------HHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccc
Q 009575 287 ---------KITNARDLINVLE-----------DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERK 346 (532)
Q Consensus 287 ---------~I~~~~el~~~le-----------~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~ 346 (532)
+|++++++.++++ ++.+.|++|||++++|++.++++|.++ +|+|| ++++
T Consensus 236 ~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~------~I~av-----~~~~ 304 (515)
T 3iyg_G 236 KKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRA------NITAI-----RRVR 304 (515)
T ss_pred cccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHC------Cceee-----ccCC
Confidence 4678888877766 899999999999999999999999875 45554 6889
Q ss_pred hhhHHHHHHHhCCeEeecCCCccccCCCCCCCce-eeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHH
Q 009575 347 SQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422 (532)
Q Consensus 347 k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~-~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e 422 (532)
+++|+|||++|||++++ +++++++++||+ |+.|++ ++++++||.||+++
T Consensus 305 k~~leria~~tGa~ii~-----~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~---------------------- 357 (515)
T 3iyg_G 305 KTDNNRIARACGARIVS-----RPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP---------------------- 357 (515)
T ss_pred HHHHHHHHHHhCCeeec-----cccccChhhcCCcccEEEEEEECCceEEEEeCCCCC----------------------
Confidence 99999999999999999 589999999999 999985 46789999999864
Q ss_pred HHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHH
Q 009575 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKV 501 (532)
Q Consensus 423 ~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~ 501 (532)
..|||+|||+|+.+++|+||+++||||++|++++++ +|||||++|++++.+|++++.++++.+| +
T Consensus 358 -------------~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~eq-~ 423 (515)
T 3iyg_G 358 -------------KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQ-W 423 (515)
T ss_pred -------------CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhccCcHHH-H
Confidence 589999999999999999999999999999999776 9999999999999999999888888887 8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 502 GADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 502 ~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++++|++||+.||++||+|||+||.+++.+|
T Consensus 424 ~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l 454 (515)
T 3iyg_G 424 PYRAVAQALEVIPRTLIQNCGASTIRLLTSL 454 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999998764
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-84 Score=705.90 Aligned_cols=400 Identities=23% Similarity=0.371 Sum_probs=359.3
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhcccc
Q 009575 66 LHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145 (532)
Q Consensus 66 i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~ 145 (532)
+..| .+++..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++||+
T Consensus 5 ~~~~--~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~----akll~~~a~~qd~ 78 (517)
T 3iyg_Z 5 VARA--QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPT----ASLIAKVATAQDD 78 (517)
T ss_pred hhhH--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHH----HHHHHHHHHHHHH
Confidence 3455 889999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC-ch-hHHHHHhhhcCC------hh
Q 009575 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DS-ELADVAAVSAGN------NY 217 (532)
Q Consensus 146 ~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~-~~-~l~~va~ts~~~------~~ 217 (532)
++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. +|.++|+||+++ .+
T Consensus 79 e~GDGTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~L~~va~tsl~sKi~~~~~d 158 (517)
T 3iyg_Z 79 ITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELAD 158 (517)
T ss_pred HhCCCceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCCCHHHHHHHHHHHhccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999987 55 899999999864 58
Q ss_pred hHhHHHHHHHHhhccCC------c--eEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccC-
Q 009575 218 EVGNMIAEAMSKVGRKG------V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI- 288 (532)
Q Consensus 218 ~is~li~eA~~~vg~~g------~--I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I- 288 (532)
.|+++++||+..+.+.+ . |...+|++.+|| ++++||+|+++|.||+ |+++++||+|+++|++|
T Consensus 159 ~la~l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~p~-------m~~~ien~kIll~~~~le 230 (517)
T 3iyg_Z 159 VLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDT-SLIRGLVLDHGARHPD-------MKKRVEDAYILTCNVSLE 230 (517)
T ss_pred HHHHHHHHHhheeccCCCcCChhHheeeeecCCCcccc-ceEeeEEEeccCCCCC-------ccccccCCeEEEeccccc
Confidence 89999999999886532 2 333689999999 8999999999999996 77889999999999986
Q ss_pred ------------CCHHHH-----------HHHHHHHHhcCCC--------e-EEEcccccHHHHHHHHHhhhcccceEEE
Q 009575 289 ------------TNARDL-----------INVLEDAIRGAYP--------I-LIIAEDIEQEALATLVVNKLRGALKIAA 336 (532)
Q Consensus 289 ------------~~~~el-----------~~~le~i~~~g~~--------l-vIia~~I~~~al~~L~~n~~~g~~~i~a 336 (532)
++++++ .+.++++...+.+ + ||++++|+++++++|.++ +|++
T Consensus 231 ~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~------gI~~ 304 (517)
T 3iyg_Z 231 YEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKE------GIIA 304 (517)
T ss_pred ccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHC------CCEE
Confidence 344443 2345666555544 3 566799999999999886 3566
Q ss_pred eeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCC-CceeeEE---EEeCceEEEEcCCCChhhHHHHHHHHHH
Q 009575 337 LKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEV-LGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRT 412 (532)
Q Consensus 337 Vk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~-lG~~~~v---~i~~~~~~~i~g~~~~~~i~~r~~~i~~ 412 (532)
|+ ++++++|+|||++|||++++ +++++++++ ||+|+ | .++++++++|.+|+++
T Consensus 305 v~-----~v~~~~leria~~tGa~iv~-----~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~------------ 361 (517)
T 3iyg_Z 305 LR-----RAKRRNMERLTLACGGIALN-----SLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNP------------ 361 (517)
T ss_pred EE-----ecCHHHHHHHHHHhCCEEec-----chhhCcccccCCcce-EEEEEEcCceEEEEeCCCCc------------
Confidence 66 45689999999999999999 589999999 99999 9 5688999999999864
Q ss_pred HHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHh
Q 009575 413 LIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIK 491 (532)
Q Consensus 413 ~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~ 491 (532)
..|||+|||+|+.+++|+||+++||||++|+++++| +|||||++||+++++|++++
T Consensus 362 -----------------------~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~ 418 (517)
T 3iyg_Z 362 -----------------------RSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYK 418 (517)
T ss_pred -----------------------hhheeeecCCcHHHHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999999 99999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 492 ETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 492 ~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
.++++.+| +++++|++||+.+|+|||+|||+||.+++.+|
T Consensus 419 ~~~~g~eq-~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l 458 (517)
T 3iyg_Z 419 PSVKGRAQ-LGVQAFADALLIIPKVLAQNSGFDLQETLVKV 458 (517)
T ss_pred ccCCHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 88877776 89999999999999999999999999998864
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-84 Score=716.54 Aligned_cols=397 Identities=21% Similarity=0.288 Sum_probs=364.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
+++|..|+.||+.|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ ||||+++|++||+++||||
T Consensus 25 ~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~----Akll~e~a~~qd~e~GDGT 100 (568)
T 3p9d_H 25 DGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPA----VKVLVMATEQQKIDMGDGT 100 (568)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCHH----HHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHH----HHHHHHHHHhhhceeCCCc
Confidence 579999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhccccc----Cch-hHHHHHhhhcC-----ChhhHhH
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV----EDS-ELADVAAVSAG-----NNYEVGN 221 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v----~~~-~l~~va~ts~~-----~~~~is~ 221 (532)
||+||||++||+++.+++++|+||+.|++||++|++.++++|++++.++ ++. +|.++|+||++ ++++|++
T Consensus 101 TtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~ 180 (568)
T 3p9d_H 101 NLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSE 180 (568)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCCCCCTTHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhccCcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999876 344 89999999864 4689999
Q ss_pred HHHHHHHhhccC-----C-------ceEEe--cCCCccceeeEEeeeEEeecccCCccccCcccCeeecc---ceeEeee
Q 009575 222 MIAEAMSKVGRK-----G-------VVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYE---NCKLLLV 284 (532)
Q Consensus 222 li~eA~~~vg~~-----g-------~I~v~--~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~---npkIll~ 284 (532)
|++||+.+++++ | .|+++ +|++++|| ++++||+|+++|. +|+++++ ||||+++
T Consensus 181 livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS-~lv~G~v~dk~~~---------~m~~~i~~~~n~kIlll 250 (568)
T 3p9d_H 181 LVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNS-TVIKGMVFNREPE---------GHVKSLSEDKKHKVAVF 250 (568)
T ss_dssp HHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGC-EEESSCCBSSCBS---------SGGGSCCCCSSCEEEEE
T ss_pred HHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchh-eeeccEEEeeccc---------CCcEEEecCCcceEEEE
Confidence 999999999874 3 46664 69999999 8999999999873 3777888 9999999
Q ss_pred ccc-------------CCCHHHHHH-----------HHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCC
Q 009575 285 DKK-------------ITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (532)
Q Consensus 285 d~~-------------I~~~~el~~-----------~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~ 340 (532)
|++ |++++++.+ +++++.+.|+||||++++|+++++++|.++ +|+||+.|
T Consensus 251 ~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~------gI~av~~v 324 (568)
T 3p9d_H 251 TCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRY------GILVLKVP 324 (568)
T ss_dssp CSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHH------TCEEECCC
T ss_pred ccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHC------CeEEEecC
Confidence 998 667777654 788999999999999999999999999987 46899877
Q ss_pred CCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009575 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (532)
Q Consensus 341 ~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~ 417 (532)
+ +.+|+|||++|||++++ +++++++++||+|+.|++ +++++++|.+|+.
T Consensus 325 ~-----~~~leria~~tGa~ivs-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~------------------ 376 (568)
T 3p9d_H 325 S-----KFELRRLCRVCGATPLP-----RLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQG------------------ 376 (568)
T ss_dssp C-----HHHHHHHHHHHSCCCCS-----SSSCCCGGGCEECSCCCCCEETTEECBCCCCCSS------------------
T ss_pred C-----HHHHHHHHHHhCCEEEe-----ccccCCHHHCCcceEEEEEEecCceEEEEecCCC------------------
Confidence 5 78999999999999999 488999999999999975 5689999999862
Q ss_pred hhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHH--cC-ccccCchhhhHHHHHHHHHhccC
Q 009575 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE--EG-IVVGGGCTLLRLSSKVDAIKETL 494 (532)
Q Consensus 418 ~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~--~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (532)
|++++|||+|||+|+.+++|+||+++||||++|++++ ++ +|||||++||+|+++|++++.++
T Consensus 377 ---------------l~~~~~TIllrG~t~~~l~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~ 441 (568)
T 3p9d_H 377 ---------------EISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERT 441 (568)
T ss_dssp ---------------SCCSSCEEEEEESCHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTC
T ss_pred ---------------CCCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccC
Confidence 2357999999999999999999999999999999999 65 99999999999999999999888
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 442 ~g~eq-~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l 478 (568)
T 3p9d_H 442 PGLLQ-LAIKQFAVAFEVVPRTLAETAGLDVNEVLPNL 478 (568)
T ss_dssp CSTHH-HHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 88877 89999999999999999999999999998764
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-84 Score=709.30 Aligned_cols=402 Identities=23% Similarity=0.337 Sum_probs=358.5
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccc
Q 009575 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (532)
Q Consensus 65 ~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d 144 (532)
+...| .+++..|+.|++.|+++|++||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++||
T Consensus 11 ~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----akll~e~a~~qd 84 (546)
T 3p9d_F 11 ESLRR--DAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPT----AVLIARAAAAQD 84 (546)
T ss_dssp EEEEH--HHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHH----HHHHHHHHHHHH
T ss_pred chhhH--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHH----HHHHHHHHHHHH
Confidence 44556 899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccC----ch-hHHHHHhhhcCC----
Q 009575 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE----DS-ELADVAAVSAGN---- 215 (532)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~----~~-~l~~va~ts~~~---- 215 (532)
+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. +|.++|+||+++
T Consensus 85 ~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~~ 164 (546)
T 3p9d_F 85 EITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDA 164 (546)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTTHH
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHhCCCcch
Confidence 999999999999999999999999999999999999999999999999999999985 34 899999999874
Q ss_pred --hhhHhHHHHHHHHhhccC-------CceEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009575 216 --NYEVGNMIAEAMSKVGRK-------GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (532)
Q Consensus 216 --~~~is~li~eA~~~vg~~-------g~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~ 284 (532)
.+.|+++++||+..+.+. ..|.+ .+|++.+|| ++++||+|+++|.||+ |+++++||+|+++
T Consensus 165 ~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~~en~kIll~ 236 (546)
T 3p9d_F 165 DLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDT-TFIKGLVLDHGGRHPD-------MPTRVKNAYVLIL 236 (546)
T ss_dssp HHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTC-CCCSSCEESCCCCSSS-------SCSSBCSCCCCEE
T ss_pred hHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCcccc-EEEeeEEEeccccccc-------CcceecCceEEEe
Confidence 578999999999998642 23444 579999999 8999999999999984 7889999999999
Q ss_pred cccCC-------------CHHH-----------HHHHHHHHHhc---------CCC-eEEEcccccHHHHHHHHHhhhcc
Q 009575 285 DKKIT-------------NARD-----------LINVLEDAIRG---------AYP-ILIIAEDIEQEALATLVVNKLRG 330 (532)
Q Consensus 285 d~~I~-------------~~~e-----------l~~~le~i~~~---------g~~-lvIia~~I~~~al~~L~~n~~~g 330 (532)
|++|+ ++++ +.+.++.+... |.| |||++++|+++|+++|++|+
T Consensus 237 ~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~g--- 313 (546)
T 3p9d_F 237 NVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHN--- 313 (546)
T ss_dssp CCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTT---
T ss_pred cCcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCC---
Confidence 98763 2222 22345666543 455 66777899999999999884
Q ss_pred cceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHH
Q 009575 331 ALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRV 407 (532)
Q Consensus 331 ~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~i~g~~~~~~i~~r~ 407 (532)
|++|+ ++++++|+|||++|||++++ +++++++++||+|+.|+ +++++|+||.||+++
T Consensus 314 ---I~~vr-----~v~~~~leria~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~------- 373 (546)
T 3p9d_F 314 ---ILALR-----RAKRRNMERLQLVTGGEAQN-----SVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP------- 373 (546)
T ss_dssp ---CEEEC-----CCCHHHHHHHHHTTTBCCCC-----CCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCC-------
T ss_pred ---CeeEe-----cCCHHHHHHHHHHhCCEEec-----chhhCCHhHCCcccEEEEEEecCceEEEEecCCCC-------
Confidence 46666 56789999999999999999 58999999999999994 688999999999874
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHH
Q 009575 408 AQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSK 486 (532)
Q Consensus 408 ~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~ 486 (532)
..|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+
T Consensus 374 ----------------------------~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~ 425 (546)
T 3p9d_F 374 ----------------------------KSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRY 425 (546)
T ss_dssp ----------------------------SCEEEECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHHHHH
T ss_pred ----------------------------ceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHH
Confidence 479999999999999999999999999999999999 999999999999999
Q ss_pred HHH---HhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhccC
Q 009575 487 VDA---IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV 532 (532)
Q Consensus 487 L~~---~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~kl 532 (532)
|++ ++.++++.+| +++++|++||+.||++||+|||+|+.+++.+|
T Consensus 426 L~~~~~~~~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 473 (546)
T 3p9d_F 426 LRSANMNKLGAKGKTK-TGIEAFAEALLVIPKTLVKNSGFDPLDVLAMV 473 (546)
T ss_dssp HHHHHTTTTTTTSHHH-HHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH
T ss_pred HHhhhhhhhcCchHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999 4777878776 89999999999999999999999999998764
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-78 Score=660.52 Aligned_cols=368 Identities=23% Similarity=0.364 Sum_probs=296.9
Q ss_pred EeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHH
Q 009575 101 VLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180 (532)
Q Consensus 101 ~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~ 180 (532)
||++++|+|+|||||+||||+|+++||+ ||||+++|++||+++||||||+||||++||+++.+++++|+||+.|++
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~ 76 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPA----AKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISE 76 (500)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHH----HHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 6888899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCc--h-hHHHHHhhhc------CChhhHhHHHHHHHHhhccC--Cc--------eEEe--
Q 009575 181 GIEKTSKALVSELKQMSKEVED--S-ELADVAAVSA------GNNYEVGNMIAEAMSKVGRK--GV--------VTLE-- 239 (532)
Q Consensus 181 G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~------~~~~~is~li~eA~~~vg~~--g~--------I~v~-- 239 (532)
||++|++.++++|+++++|++. . +|.++|+||+ +++++|++|++||+.+++++ |. |+++
T Consensus 77 G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~ 156 (500)
T 3aq1_B 77 GYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKR 156 (500)
T ss_dssp HHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEe
Confidence 9999999999999999999874 4 8999999874 46899999999999999876 53 5665
Q ss_pred cCCCccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc-------------CCCHHHH-----------H
Q 009575 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARDL-----------I 295 (532)
Q Consensus 240 ~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~-------------I~~~~el-----------~ 295 (532)
+|++++|| ++++||+|+++|.||+| +++++||+|+++|++ |++++++ .
T Consensus 157 ~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~ 228 (500)
T 3aq1_B 157 AGGSIDDS-ELIDGLVIDKERSHPNM-------PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMR 228 (500)
T ss_dssp ESSCGGGC-EEESEEEESCCCSSTTS-------CSEEEEEEEEEESSCBCC-------------------------CHHH
T ss_pred cCCCccce-EEEeeeEEeecCCCCCC-------cccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHH
Confidence 89999999 99999999999999974 667999999999998 6677765 8
Q ss_pred HHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCC
Q 009575 296 NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGK 375 (532)
Q Consensus 296 ~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~ 375 (532)
++++++.+.|+||||++++|+++|+++|++|+ |+||+ ++++++|+|||++|||++++ +++++++
T Consensus 229 ~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~-----~~~k~~le~ia~~tGa~iis-----~l~~~~~ 292 (500)
T 3aq1_B 229 EMAEKVIASGANVVFCQKGIDDMAQYYIEKAG------IYAVR-----RVKKSDLKRLSKVTGATIIQ-----DLDQITT 292 (500)
T ss_dssp HHHHHHHTTCCSEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHCCCCBS-----CTTCCCS
T ss_pred HHHHHHHHhCcCEEEECCCcCHHHHHHHHHCC------EEEEE-----eCCHHHHHHHHHHhCCeEec-----ccccCCH
Confidence 89999999999999999999999999999974 57774 78899999999999999998 5899999
Q ss_pred CCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHH
Q 009575 376 EVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKE 452 (532)
Q Consensus 376 ~~lG~~~~v~i~---~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E 452 (532)
++||+|+.|++. +++|++|.||++ +++|||+|||+|+.+++|
T Consensus 293 ~~LG~a~~v~~~~ig~~~~~~~~g~~~-----------------------------------~~~~TI~lrG~t~~~l~E 337 (500)
T 3aq1_B 293 EDVGTAGLVEEKEVRGGKMTYVTGCQN-----------------------------------SKAVTVLLHGGTEHVVDS 337 (500)
T ss_dssp TTCEEEEEEEEEECSSSEEEEEEEETT-----------------------------------CCCEEEEEEESSHHHHHH
T ss_pred hHCCCceEEEEEEecCeEEEEEECCCC-----------------------------------CceEEEEecCCcHHHHHH
Confidence 999999999974 889999999875 469999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcC-ccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcc
Q 009575 453 KKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (532)
Q Consensus 453 ~k~~i~DAl~a~~~al~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~k 531 (532)
+||+++||+|++|+++++| +|||||++|++++++|++++.++++.+| +++++|++||+.||++||+|||+|+.+++.+
T Consensus 338 ~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~ 416 (500)
T 3aq1_B 338 LDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQ-LAVSKFAEALEVIPVALAENAGLDPIDIMVE 416 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHH-HHHHHHHHHTTHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999 9999999999999999999988888776 8999999999999999999999999999886
Q ss_pred C
Q 009575 532 V 532 (532)
Q Consensus 532 l 532 (532)
|
T Consensus 417 l 417 (500)
T 3aq1_B 417 L 417 (500)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-51 Score=381.98 Aligned_cols=193 Identities=48% Similarity=0.801 Sum_probs=189.8
Q ss_pred eeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhh
Q 009575 248 LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNK 327 (532)
Q Consensus 248 ~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~ 327 (532)
+++++||.|||||+||||+|++++|.++++||+||++|++|+++++++|+||.+.+.|.||+|+++||+++||++|+.|+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs~i~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvNk 81 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNA 81 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEecccccchhhhhhhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHH
Q 009575 328 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRV 407 (532)
Q Consensus 328 ~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~g~~~~~~i~~r~ 407 (532)
+||.++|||||+|+||+.++..|+|||++|||++++++.|+++++++.++||+|++|++++++|+++.|.++++.|++|+
T Consensus 82 lrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~T~iv~G~g~~~~I~~Rv 161 (194)
T 3m6c_A 82 IRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRA 161 (194)
T ss_dssp HHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred ccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEEEEcCCceEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEE
Q 009575 408 AQIRTLIENAEQDYEREKLNERIAKLSGGVAVI 440 (532)
Q Consensus 408 ~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI 440 (532)
+||+.++++++++||||+|+||+|+|+|++|+|
T Consensus 162 ~qIr~~ie~t~s~ydkEKLqERlAkLsGGVAVI 194 (194)
T 3m6c_A 162 KHLRAEIDKSDSDWDREKLGERLAKLAGGVAVI 194 (194)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHBCCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCcEEC
Confidence 999999999999999999999999999999865
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=372.99 Aligned_cols=189 Identities=57% Similarity=0.892 Sum_probs=185.9
Q ss_pred EeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcc
Q 009575 251 VEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRG 330 (532)
Q Consensus 251 i~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g 330 (532)
-+||.|||||+||||+|++++|.++++||+||++|++|+++++++|+||.+.+.+.||+|+++||++|||++|+.|++||
T Consensus 12 ~~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNklrg 91 (201)
T 3osx_A 12 SEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMRG 91 (201)
T ss_dssp CCCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCHHHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHHHT
T ss_pred ccccEecCccCChheeecccCCEEEecCCeEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHH
Q 009575 331 ALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQI 410 (532)
Q Consensus 331 ~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i 410 (532)
.++|||||+|+||+.++..|+|||++|||++++++.|+++++++.++||+|++|++++++|+++.|.++++.|++||+||
T Consensus 92 ~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vtkd~TtIv~G~G~~~~I~~Rv~qI 171 (201)
T 3osx_A 92 IVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQI 171 (201)
T ss_dssp SCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEcCCceEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhcCCeEE
Q 009575 411 RTLIENAEQDYEREKLNERIAKLSGGVAV 439 (532)
Q Consensus 411 ~~~l~~~~~~~e~~~l~eR~a~lsg~~~t 439 (532)
+.++++++++||||+|+||+|+|+|++|+
T Consensus 172 r~qie~t~S~ydkEKLqERLAKLsGGVAV 200 (201)
T 3osx_A 172 RQQIEESTSDYDREKLQERVAKLAGGVKL 200 (201)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCcC
Confidence 99999999999999999999999999874
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=281.83 Aligned_cols=144 Identities=56% Similarity=0.922 Sum_probs=142.1
Q ss_pred eeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccc
Q 009575 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGAL 332 (532)
Q Consensus 253 G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~ 332 (532)
||.|||||+||||+|++++|.++++||+||++|++|+++++++|+||++.+.|.||+|+++||++|||++|+.|++||.+
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l 80 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL 80 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSC
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEecccccCHHHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEeCceEEEEcC
Q 009575 333 KIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396 (532)
Q Consensus 333 ~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~g 396 (532)
+|||||+|+||+.|+..|+|||++|||++++++.|+++++++.++||+|++|++++++|+++.|
T Consensus 81 ~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~TtIv~G 144 (145)
T 1srv_A 81 SVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGG 144 (145)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred eEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999975
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=187.96 Aligned_cols=146 Identities=17% Similarity=0.291 Sum_probs=120.8
Q ss_pred ccceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC-------------CHHH-----------HHHHHH
Q 009575 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARD-----------LINVLE 299 (532)
Q Consensus 244 ~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~-------------~~~e-----------l~~~le 299 (532)
++|| ++++|++|++++.+| +||+.++||||++++++|+ ++++ +.+.++
T Consensus 1 ~~dS-~lv~Gvvl~k~~~~~-------~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~ 72 (178)
T 1gml_A 1 MEDS-CVLRGVMINKDVTHP-------RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCE 72 (178)
T ss_dssp --CC-SEEEEEEESCCCSST-------TSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHH
T ss_pred CCCc-EEEEEEEEeccccCC-------CCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 4688 899999999998876 4788899999999999753 2222 356788
Q ss_pred HHHhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCc
Q 009575 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLG 379 (532)
Q Consensus 300 ~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG 379 (532)
++++.|++|||++++|++.|+++|.+++ |+||+ ++++++|++||++|||++++ ++++++++.||
T Consensus 73 kI~~~g~nVVl~~k~I~d~a~~~l~k~g------I~~vr-----~v~~~dleria~atGa~iv~-----~~~~l~~~~LG 136 (178)
T 1gml_A 73 DIIQLKPDVVITEKGISDLAQHYLMRAN------VTAIR-----RVRKTDNNRIARACGARIVS-----RPEELREDDVG 136 (178)
T ss_dssp HHHTTCCSEEEESSCBCHHHHHHHHHTT------CEEEC-----CCCHHHHHHHHHHHCCCEES-----CGGGCCGGGSB
T ss_pred HHhhcCCcEEEECCcccHHHHHHHHHCC------CEEEe-----cCCHHHHHHHHHHhCCeEeC-----ChhhCChhhhC
Confidence 9999999999999999999999999874 46665 67899999999999999999 58999999999
Q ss_pred e-eeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcCCeEEEEeCCCCHH
Q 009575 380 N-ASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 448 (532)
Q Consensus 380 ~-~~~v~---i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~ 448 (532)
+ |+.|+ ++++++++|+||+++ ..|||+|||++..
T Consensus 137 ~~~~~v~~~~ig~~~~~~~~gc~~~-----------------------------------~~~TIllRG~~~~ 174 (178)
T 1gml_A 137 TGAGLLEIKKIGDEYFTFITDCKDP-----------------------------------KACTILLRGASHH 174 (178)
T ss_dssp CCEEEEEEEEETTEEEEEEEEESST-----------------------------------TSCEEEEEC----
T ss_pred CcccEEEEEEECCeEEEEEECCCCC-----------------------------------CEEEEEEECCCcc
Confidence 9 99998 468899999998763 5899999999853
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=161.94 Aligned_cols=127 Identities=22% Similarity=0.358 Sum_probs=108.9
Q ss_pred EeeeEEeecccCCccccCcccCeeeccceeEeeecccCC-------------CHHH-----------HHHHHHHHHhcCC
Q 009575 251 VEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARD-----------LINVLEDAIRGAY 306 (532)
Q Consensus 251 i~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~-------------~~~e-----------l~~~le~i~~~g~ 306 (532)
++|++|++++.+| +||+.++||||++++++|+ ++++ +.+.++++++.|+
T Consensus 1 i~Gvv~~k~~~~~-------~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~ 73 (159)
T 1ass_A 1 MSGIVIDKEKVHS-------KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA 73 (159)
T ss_dssp CCCEEESCCCSCT-------TSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEecccCCC-------CCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCC
Confidence 4799999998886 4788899999999999854 3333 3557889999999
Q ss_pred CeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEE-
Q 009575 307 PILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV- 385 (532)
Q Consensus 307 ~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~- 385 (532)
+|||++++|++.|+++|.+++ |+||+ ++++++|++||++|||++++ ++++++++.||+|+.|+
T Consensus 74 nVVl~~k~I~d~a~~~l~k~g------I~~v~-----~v~~~dleria~atGa~iv~-----~~~~l~~~~LG~~~~v~e 137 (159)
T 1ass_A 74 NVVLCQKGIDDVAQHYLAKEG------IYAVR-----RVKKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEE 137 (159)
T ss_dssp SEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHTCCCBS-----STTSCCTTSCEEEEEEEE
T ss_pred eEEEECCccCHHHHHHHHHCC------CEEEc-----cCCHHHHHHHHHHhCCeeeC-----ccccCCcccCccceEEEE
Confidence 999999999999999999874 46665 67899999999999999999 58999999999999998
Q ss_pred --EeCceEEEEcCCCCh
Q 009575 386 --LTKDTTTIVGDGSTQ 400 (532)
Q Consensus 386 --i~~~~~~~i~g~~~~ 400 (532)
++++++++|.||++.
T Consensus 138 ~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 138 RKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp EEETTEEEEEEESCC--
T ss_pred EEECCeEEEEEECCCCc
Confidence 468899999999863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 532 | ||||
| d1kida_ | 193 | c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta | 2e-81 | |
| d1sjpa2 | 184 | c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium | 2e-81 | |
| d1ioka2 | 176 | c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de | 2e-78 | |
| d1srva_ | 145 | c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus | 2e-64 | |
| d1kp8a1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc | 8e-52 | |
| d1kp8a1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc | 9e-10 | |
| d1ioka1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par | 6e-45 | |
| d1ioka1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par | 4e-12 | |
| d1we3a1 | 255 | a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The | 1e-44 | |
| d1q3qa1 | 258 | a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain | 2e-35 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 2e-26 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 1e-07 | |
| d1a6db1 | 243 | a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai | 5e-25 | |
| d1sjpa3 | 89 | d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My | 8e-22 | |
| d1sjpa3 | 89 | d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My | 1e-04 | |
| d1sjpa1 | 180 | a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My | 1e-20 | |
| d1we3a3 | 86 | d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th | 4e-17 | |
| d1we3a3 | 86 | d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th | 8e-06 | |
| d1kp8a3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es | 2e-14 | |
| d1kp8a3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es | 2e-12 | |
| d1ioka3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa | 2e-12 | |
| d1ioka3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa | 3e-12 |
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Score = 250 bits (640), Expect = 2e-81
Identities = 109/190 (57%), Positives = 138/190 (72%)
Query: 248 LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYP 307
EGMQFDRGY+SPYF+ E AVE E+ +LL DKKI+N R+++ VLE + P
Sbjct: 4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKP 63
Query: 308 ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367
+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+ L DIA LTGGTVI +E+G
Sbjct: 64 LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG 123
Query: 368 LALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427
+ L+K E LG A +VV+ KDTTTI+ + A+ RVAQIR IE A DY+REKL
Sbjct: 124 MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 183
Query: 428 ERIAKLSGGV 437
ER+AKL+GGV
Sbjct: 184 ERVAKLAGGV 193
|
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 250 bits (639), Expect = 2e-81
Identities = 104/184 (56%), Positives = 133/184 (72%)
Query: 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIA 312
GM+FD+GYIS YFVTD E+ E+ +LLV K++ +DL+ +LE I P+LIIA
Sbjct: 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60
Query: 313 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDK 372
ED+E EAL+TLVVNK+RG K A+KAPGFG+R+ L D+AILTGG VI +EVGL L+
Sbjct: 61 EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120
Query: 373 VGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAK 432
+LG A KVV+TKD TTIV DA++ RVAQIR IEN++ DY+REKL ER+AK
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180
Query: 433 LSGG 436
L+GG
Sbjct: 181 LAGG 184
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Score = 241 bits (617), Expect = 2e-78
Identities = 96/175 (54%), Positives = 129/175 (73%)
Query: 252 EGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILII 311
EGMQFDRGY+SPYFVT+++KM E E+ +LL +KK+++ + ++ +LE I+ P+LI+
Sbjct: 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIV 60
Query: 312 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALD 371
AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+ L DIAILTGG VI +++G+ L+
Sbjct: 61 AEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLE 120
Query: 372 KVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426
V ++LG A KV + KD TTIV + + RV+QIR IE DY+REKL
Sbjct: 121 NVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKL 175
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Score = 204 bits (521), Expect = 2e-64
Identities = 81/143 (56%), Positives = 107/143 (74%)
Query: 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIA 312
G QFD+GYISPYFVT+ E M E+ +L+V+KK++N R+L+ +LE + P+LIIA
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 313 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDK 372
ED+E EALATLVVNKLRG L +AA+KAPGFG+R+ + L DIA +TGGTVI +E+G L+
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 373 VGKEVLGNASKVVLTKDTTTIVG 395
+LG A +V +TKD TTIVG
Sbjct: 121 ATLSMLGRAERVRITKDETTIVG 143
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Score = 174 bits (443), Expect = 8e-52
Identities = 99/251 (39%), Positives = 130/251 (51%), Gaps = 24/251 (9%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F D A K+ GVN LAD V VTLGPKGRNVVL+ +GAP I DGV+VA+E
Sbjct: 1 AAKDVKFGND--AGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVARE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RG
Sbjct: 59 IELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDSELADVAAV--------SAGNNYEVG-NMIAEAMSKVGR 232
I+K V ELK +S V + V + VG + AM R
Sbjct: 119 IDKAVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLR 178
Query: 233 KGV-------------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENC 279
+ V V +G N G D G + P VT S
Sbjct: 179 QIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAG 238
Query: 280 KLLLVDKKITN 290
++ + +T+
Sbjct: 239 LMITTECMVTD 249
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Score = 57.1 bits (137), Expect = 9e-10
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 12/202 (5%)
Query: 336 ALKAPGFG-ERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV 394
A K FG + + L + +L ++ +G V + A + TKD ++
Sbjct: 1 AAKDVKFGNDAGVKMLRGVNVLAD--AVKVTLGPKGRNVVLDKSFGAPTI--TKDGVSVA 56
Query: 395 GDGSTQDAVSKRVAQIRTLIENAEQD----YEREKLNERIAKLSGGVAVIQVGAQTETEL 450
+ +D AQ+ + + D A ++ G+ + G
Sbjct: 57 REIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLK 116
Query: 451 KEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRAL 510
+ V A+ A+ G+V GGG L+R++SK+ ++ N ++ VG + RA+
Sbjct: 117 RGIDKAVTVAV-EELKALSVGVVAGGGVALIRVASKLADLR--GQNADQNVGIKVALRAM 173
Query: 511 CYPLKLIAKNAGVNGSVVSEKV 532
PL+ I N G SVV+ V
Sbjct: 174 EAPLRQIVLNCGEEPSVVANTV 195
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Score = 156 bits (396), Expect = 6e-45
Identities = 88/252 (34%), Positives = 129/252 (51%), Gaps = 25/252 (9%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++ FN D A ++ GVN LAD V VTLGPKGRNVV++ +GAP+I DGV+VAKE
Sbjct: 1 AAKEVKFNSD--ARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+EL D EN+GA++VR+ A++TND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 59 IELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDSEL--------ADVAAVSAGNNYEVGNMI---------A 224
I+ + +V +K ++ + A ++ + G I
Sbjct: 119 IDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMR 178
Query: 225 EAMSKVGRKGVVTLEEGKSAENMLYVVE------GMQFDRGYISPYFVTDSEKMAVEYEN 278
+ G G V + + + + + G F G I P V +
Sbjct: 179 QIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVA 238
Query: 279 CKLLLVDKKITN 290
L+ + I
Sbjct: 239 GLLITTEAMIAE 250
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Score = 64.4 bits (156), Expect = 4e-12
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 16/200 (8%)
Query: 336 ALKAPGFG-ERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV 394
A K F + + + L + IL ++ +G V + A ++ TKD ++
Sbjct: 1 AAKEVKFNSDARDRMLKGVNILAD--AVKVTLGPKGRNVVIDKSFGAPRI--TKDGVSVA 56
Query: 395 GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKK 454
+ D AQ+ + E + A+++ G +
Sbjct: 57 KEIELSDKFENMGAQM---VREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPM 113
Query: 455 LRVEDALNATKAAVEE------GIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKR 508
AT VE GIVVGGG L++ + ++ + N ++ G I++R
Sbjct: 114 DLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSG--ANSDQDAGIAIIRR 171
Query: 509 ALCYPLKLIAKNAGVNGSVV 528
AL P++ IA+NAGV+G+VV
Sbjct: 172 ALEAPMRQIAENAGVDGAVV 191
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Score = 155 bits (393), Expect = 1e-44
Identities = 95/256 (37%), Positives = 132/256 (51%), Gaps = 29/256 (11%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK L F++ A + L+ GVN +A+ V VTLGP+GRNVVLE K+G+P I DGVTVAKEV
Sbjct: 1 AKILVFDEA--ARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEV 58
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELED +ENIGA+L+++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGI
Sbjct: 59 ELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGI 118
Query: 183 EKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMI------------AEAMSKV 230
EK +A V ++K ++ V V + A + E A+ +
Sbjct: 119 EKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEP 178
Query: 231 GRKGVVTLEEG------------KSAENMLYVVEGMQFD---RGYISPYFVTDSEKMAVE 275
R+ K+ G D G + P VT S
Sbjct: 179 ARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAA 238
Query: 276 YENCKLLLVDKKITNA 291
+L + +
Sbjct: 239 SIGALILTTEAVVAEK 254
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 131 bits (330), Expect = 2e-35
Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 32/243 (13%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
A + +A+ V TLGPKG + +L G + ND T+ +++L ++ A
Sbjct: 16 AQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDL----QHPAA 71
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
K++ + A + AGDGTTT+VV+A L+ + +++ +P +IT+G ++ L
Sbjct: 72 KMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEIL 131
Query: 194 KQMS----KEVEDSELADVAAVSAGNNYEVGNMIAEAMSKV---------------GRKG 234
+++ + ++A +VG A A+ G
Sbjct: 132 DEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDT 191
Query: 235 VVTLEEGKSAENM------LYVVEGMQFD---RGYISPYFVTDSEKMAVEYENCKLLLVD 285
V L + S + V EG D +G I P V + +L +D
Sbjct: 192 VEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRID 251
Query: 286 KKI 288
I
Sbjct: 252 DVI 254
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 105 bits (263), Expect = 2e-26
Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 34/244 (13%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
A + +AD V TLGPKG + +L G I NDG T+ KE+++E P A
Sbjct: 7 AQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT----A 62
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
K++ + + + GDGTTT+VVL+ L+ + ++ G +P +I+ G +
Sbjct: 63 KMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKII 122
Query: 194 KQMSKEVED-----------SELADVAAVSAGNNYEVGNMIAEAMSKV--------GRKG 234
+++++ LA A G A+A+ + G
Sbjct: 123 DEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDP 182
Query: 235 VVTLEEGKSAENMLYVVEGM---------QFDRGYISPYFVTDSE-KMAVEYENCKLLLV 284
+ TL + K+ + + G+ +G + P V + AVE +L +
Sbjct: 183 INTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVA-TMILRI 241
Query: 285 DKKI 288
D I
Sbjct: 242 DDVI 245
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 50.9 bits (121), Expect = 1e-07
Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 3/181 (1%)
Query: 353 IAILTGGTVIRDEVGLALDKVGKEVL--GNASKVVLTKDTTTIVGDGSTQDAVSKRVAQI 410
+ I D V L G + + + ++++ D TI+ + + +K + ++
Sbjct: 9 RNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEV 68
Query: 411 RTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470
+ A D + L ++ G +L V +A E+
Sbjct: 69 SKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK 128
Query: 471 GIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530
+ GGG L+ ++ ++ E ++ + +AL + +A+NAG++
Sbjct: 129 SFLWGGGAVEAELAMRLAKYANSVGGRE-QLAIEAFAKALEIIPRTLAENAGIDPINTLI 187
Query: 531 K 531
K
Sbjct: 188 K 188
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 101 bits (252), Expect = 5e-25
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
AMK+ +++ V +LGP+G + +L G I NDGVT+ KE+++E P A
Sbjct: 3 AMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----A 58
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
K++ + + + GDGTTT+V++A GL+ + ++ +P +I+ G S+ +
Sbjct: 59 KMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVI 118
Query: 194 KQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGV 235
++S ++ + A ++ +
Sbjct: 119 DEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKF 160
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 87.5 bits (217), Expect = 8e-22
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 199 EVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFD 257
EVE E +A AA+SAG+ +G++IAEAM KVG +GV+T+EE + L + E
Sbjct: 1 EVETKEQIAATAAISAGDQ-SIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEVAVIK 59
Query: 258 RGYISPYFVTD-SEKMAVEYENCKLLLVD 285
G + + + ++ N K + +
Sbjct: 60 AGAATEVELKERKHRIEDAVRNAKAAVEE 88
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 38.6 bits (90), Expect = 1e-04
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 437 VAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 471
VAVI+ GA TE ELKE+K R+EDA+ KAAVEEG
Sbjct: 55 VAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG 89
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 87.5 bits (216), Expect = 1e-20
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 126 DPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKT 185
DP E IGA+LV++ A KT+D+AGDGTTT+ VLAQ L+ EG++ VAAGANP+ + RGIEK
Sbjct: 1 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKA 60
Query: 186 SKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGR 232
+ + L + +K V + + A + ++ A + V
Sbjct: 61 VEKVTETLLKGAKIVAGGGVTLLQAAPTLDELKLEGDEATGANIVKV 107
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Score = 74.4 bits (183), Expect = 4e-17
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 203 SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYIS 262
+ +VA +SA N+ EVG +IA+AM KVG++G++T+EE KS E L V +
Sbjct: 4 KAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVGVAVI---RVG 59
Query: 263 PYFVTDSEKMAVEYENC 279
T+ ++ +E+
Sbjct: 60 AATETELKEKKHRFEDA 76
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Score = 42.0 bits (99), Expect = 8e-06
Identities = 30/35 (85%), Positives = 32/35 (91%)
Query: 436 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470
GVAVI+VGA TETELKEKK R EDALNAT+AAVEE
Sbjct: 52 GVAVIRVGAATETELKEKKHRFEDALNATRAAVEE 86
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Score = 67.3 bits (164), Expect = 2e-14
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 200 VEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDR 258
DS +A V +SA ++ VG +IAEAM KVG++GV+T+E+G ++ L VVE +
Sbjct: 2 CSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLA 61
Query: 259 GYISPYFVTDSEKMAVEYENCKL 281
G ++ V + ++ ++ + ++
Sbjct: 62 GGVAVIKVGAATEVEMKEKKARV 84
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Score = 61.2 bits (148), Expect = 2e-12
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 400 QDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 459
+A+ K + +E+ + + ER+AKL+GGVAVI+VGA TE E+KEKK RVED
Sbjct: 27 AEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATEVEMKEKKARVED 86
Query: 460 ALNATKAAVEE 470
AL+AT+AAVEE
Sbjct: 87 ALHATRAAVEE 97
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Score = 61.2 bits (148), Expect = 2e-12
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 400 QDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 459
+A+ + + +E + ++ ER+AKL+GGVAVI+VG TE E+KE+K RV+D
Sbjct: 27 AEAMQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVGGMTEIEVKERKDRVDD 86
Query: 460 ALNATKAAVEE 470
ALNAT+AAV+E
Sbjct: 87 ALNATRAAVQE 97
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Score = 60.4 bits (146), Expect = 3e-12
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 200 VEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDR 258
V DS E+A V +SA +G IAEAM +VG +GV+T+EE K E + VVE +
Sbjct: 2 VNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKLA 61
Query: 259 GYISPYFVTDSEKMAVEYENCKL 281
G ++ V ++ V+ ++
Sbjct: 62 GGVAVIRVGGMTEIEVKERKDRV 84
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| d1kida_ | 193 | GroEL, A domain {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1sjpa2 | 184 | GroEL, A domain {Mycobacterium tuberculosis, GroEL | 100.0 | |
| d1ioka2 | 176 | GroEL, A domain {Paracoccus denitrificans [TaxId: | 100.0 | |
| d1kp8a1 | 252 | GroEL, E domain {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1a6db1 | 243 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1q3qa1 | 258 | Thermosome, E domain {Archaeon Thermococcus sp. ks | 100.0 | |
| d1a6da1 | 245 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1ioka1 | 252 | GroEL, E domain {Paracoccus denitrificans [TaxId: | 100.0 | |
| d1srva_ | 145 | GroEL, A domain {Thermus thermophilus [TaxId: 274] | 100.0 | |
| d1we3a1 | 255 | GroEL, E domain {Thermus thermophilus [TaxId: 274] | 99.98 | |
| d1gmla_ | 168 | Thermosome, A-domain {Mouse (Mus musculus), gamma | 99.8 | |
| d1assa_ | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.76 | |
| d1q3qa2 | 153 | Thermosome, A-domain {Archaeon Thermococcus sp. ks | 99.75 | |
| d1a6db2 | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.75 | |
| d1sjpa1 | 180 | GroEL, E domain {Mycobacterium tuberculosis, GroEL | 99.63 | |
| d1sjpa3 | 89 | GroEL, I domain {Mycobacterium tuberculosis, GroEL | 99.58 | |
| d1we3a3 | 86 | GroEL, I domain {Thermus thermophilus [TaxId: 274] | 99.4 | |
| d1kp8a3 | 97 | GroEL, I domain {Escherichia coli [TaxId: 562]} | 99.38 | |
| d1ioka3 | 97 | GroEL, I domain {Paracoccus denitrificans [TaxId: | 99.35 | |
| d1we3a1 | 255 | GroEL, E domain {Thermus thermophilus [TaxId: 274] | 99.24 | |
| d1ioka1 | 252 | GroEL, E domain {Paracoccus denitrificans [TaxId: | 99.22 | |
| d1kp8a1 | 252 | GroEL, E domain {Escherichia coli [TaxId: 562]} | 98.89 | |
| d1q3qa1 | 258 | Thermosome, E domain {Archaeon Thermococcus sp. ks | 98.62 | |
| d1sjpa1 | 180 | GroEL, E domain {Mycobacterium tuberculosis, GroEL | 98.56 | |
| d1q3qa3 | 107 | Thermosome, I domain {Archaeon Thermococcus sp. ks | 98.4 | |
| d1a6da3 | 105 | Thermosome, I domain {Archaeon Thermoplasma acidop | 98.35 | |
| d1a6db3 | 107 | Thermosome, I domain {Archaeon Thermoplasma acidop | 98.28 | |
| d1ioka3 | 97 | GroEL, I domain {Paracoccus denitrificans [TaxId: | 97.52 | |
| d1kp8a3 | 97 | GroEL, I domain {Escherichia coli [TaxId: 562]} | 96.88 |
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-43 Score=336.56 Aligned_cols=189 Identities=58% Similarity=0.882 Sum_probs=185.6
Q ss_pred eEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhh
Q 009575 249 YVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKL 328 (532)
Q Consensus 249 ~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~ 328 (532)
++.+||.||+||.||||+|+++++.++|+||+||++|.+|+++++++|+||.+.+.+.||||++++|+++||++|+.|++
T Consensus 5 ~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~ 84 (193)
T d1kida_ 5 RGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM 84 (193)
T ss_dssp SCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHH
T ss_pred cccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHH
Q 009575 329 RGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVA 408 (532)
Q Consensus 329 ~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~g~~~~~~i~~r~~ 408 (532)
+|.++|||||+|+||+.+++.|+|||.+|||++++++.|.++++++.++||+|++|++++++|+++.+.++++.+++|++
T Consensus 85 kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri~ 164 (193)
T d1kida_ 85 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA 164 (193)
T ss_dssp TTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred ccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhcCCe
Q 009575 409 QIRTLIENAEQDYEREKLNERIAKLSGGV 437 (532)
Q Consensus 409 ~i~~~l~~~~~~~e~~~l~eR~a~lsg~~ 437 (532)
+|+.++++++++|++++|++||++|+|++
T Consensus 165 ~Lk~~l~~~~~~~~~e~L~eRlakLsGGV 193 (193)
T d1kida_ 165 QIRQQIEEATSDYDREKLQERVAKLAGGV 193 (193)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999874
|
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=100.00 E-value=3.9e-42 Score=324.16 Aligned_cols=184 Identities=57% Similarity=0.893 Sum_probs=181.5
Q ss_pred eeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccc
Q 009575 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGAL 332 (532)
Q Consensus 253 G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~ 332 (532)
||.|++||.||||+|+++++.++++||+||++|.+|+++++++|+||.+.+.+.||||++++|+++||++|+.|+++|.+
T Consensus 1 G~~~d~Gy~Sp~Fvt~~~~~~~~~~~p~ili~d~ki~~~~~i~p~Le~~~~~~rPLlIIA~di~~~aL~~Lv~N~~~g~l 80 (184)
T d1sjpa2 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTF 80 (184)
T ss_dssp EEEESCCBSCGGGCSBTTTTBEEEESCEEEEESSCBCCSTTTHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHTTSS
T ss_pred CCccCcCccCcccccCCCCCEEEecCCEEEEecCccCcHHHHHHHHHHhhccCCcEEEEcchhhHHHHHHHHHHHhcCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHHH
Q 009575 333 KIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRT 412 (532)
Q Consensus 333 ~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~ 412 (532)
+|||||+|+||+.+++.|+|||.+|||++++++.|.++++++.++||+|++|++++++|+++.+.++++.|++|+++|+.
T Consensus 81 ~v~aVkaPgfG~~r~~~L~DlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~~~g~~~~I~~Ri~~Lk~ 160 (184)
T d1sjpa2 81 KSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQ 160 (184)
T ss_dssp CCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTTTBCSSSCCTTTSEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHH
T ss_pred heecccCCCCCcchHHHHHHHHHHhCCEEecccccccccccchhhCCeeeEEEEecCceEEecCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhhcCC
Q 009575 413 LIENAEQDYEREKLNERIAKLSGG 436 (532)
Q Consensus 413 ~l~~~~~~~e~~~l~eR~a~lsg~ 436 (532)
+++++.++|++++|++||++|+||
T Consensus 161 ~l~~~~~~~e~~~L~eRLAkLsGG 184 (184)
T d1sjpa2 161 EIENSDSDYDREKLQERLAKLAGG 184 (184)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999986
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=3.3e-40 Score=308.47 Aligned_cols=176 Identities=55% Similarity=0.896 Sum_probs=130.8
Q ss_pred eeeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhccc
Q 009575 252 EGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGA 331 (532)
Q Consensus 252 ~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~ 331 (532)
+||.||+||.||||+|+++++.++|+||+||++|.+|+++++++|+||.+.+.+.||||++++|+++||++|+.|+++|.
T Consensus 1 EG~~~d~Gy~SpyFvtd~~~~~~~l~np~ILi~d~kI~~~~~i~p~Le~~~~~~~PLlIIA~di~~~aL~~Lv~N~~~g~ 80 (176)
T d1ioka2 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGG 80 (176)
T ss_dssp CCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC-----------CCCCEEEESCBC---------------
T ss_pred CCcccccCccCccceeCCcCCEEEeeCcEEEEEccccCcHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHH
Q 009575 332 LKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIR 411 (532)
Q Consensus 332 ~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~ 411 (532)
++|||||+|+||+.+++.|+|||.+|||++++++.|.++++++.++||+|++|.+++++|++++|.++++.|++|+++|+
T Consensus 81 l~v~aVkaP~fG~~r~~~LeDlA~~tGa~vi~~~~g~~l~~~~~~~LG~a~kv~vtk~~T~ii~g~g~~~~i~~Ri~~Lk 160 (176)
T d1ioka2 81 LKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIR 160 (176)
T ss_dssp --CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEECSSCEEEESCCCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhhCCEEEecccCCChhhCCHHHCceeeEEEEecCceEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHH
Q 009575 412 TLIENAEQDYEREKLN 427 (532)
Q Consensus 412 ~~l~~~~~~~e~~~l~ 427 (532)
.++++++++|||++|+
T Consensus 161 ~~i~~~~s~~~rekLq 176 (176)
T d1ioka2 161 QQIEETTSDYDREKLQ 176 (176)
T ss_dssp HHHTTCCCSSHHHHHH
T ss_pred HHHHHcCCHHHHHhhC
Confidence 9999999999999985
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-39 Score=323.18 Aligned_cols=226 Identities=43% Similarity=0.587 Sum_probs=192.8
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|++.|| +++|+.+++|+..|+++|++||||+|+||||.+..|.|+|||||+||+++++++||++|+|++++++++.+
T Consensus 2 ak~~~fg--~dar~~ll~gi~~la~~v~~TLGP~g~~~~i~~~~g~~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~~a~~ 79 (252)
T d1kp8a1 2 AKDVKFG--NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASK 79 (252)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred CccccCC--HHHHHHHHHHHHHHHhhHHhccCCCCCeEEEEcCCCCeEEEecchheeecccccchHHHHHHHHHHHHHHh
Confidence 7999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch-hHHH--HHhhh-----cC
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELAD--VAAVS-----AG 214 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~--va~ts-----~~ 214 (532)
+++++||||||+++|++++++++.+++..|+||..|++||+++.+.+++.|+++++++... ++.. .+.++ .|
T Consensus 80 ~~~~~GDgttt~~vla~~ll~~~~~~i~~G~~p~~i~~gi~~a~~~v~~~L~~~s~~i~~~~~~~~v~~~~~~~~~k~~n 159 (252)
T d1kp8a1 80 ANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQN 159 (252)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCEEETTTHHHHHHHHHTTTCCCSS
T ss_pred hhHHhccccchhHHHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHhcceeeccCchhhhhHHHHHhhhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999866 4333 33332 35
Q ss_pred ChhhHh-HHHHHHHHhh--------ccCCc---eEE--ecCCCccceeeEEeeeEEeecccCCccccCcccCeeecccee
Q 009575 215 NNYEVG-NMIAEAMSKV--------GRKGV---VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCK 280 (532)
Q Consensus 215 ~~~~is-~li~eA~~~v--------g~~g~---I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npk 280 (532)
+|+.++ .++.+|+... +.+|. ..+ .++....|...-..|+.|++||++|+|+++...+...+.+|.
T Consensus 160 ~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~~~~~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~~a~~~~~~ 239 (252)
T d1kp8a1 160 ADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 239 (252)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHH
T ss_pred ccHHHhHHHHHHHHHHHHHHHHHhhhhcccccceeeeecCCCeeEEEEEEEEEEEEeeccCCcceeccHhhhhheeccce
Confidence 677787 4656776554 33332 222 233444444444559999999999999998777777788999
Q ss_pred EeeecccCCC
Q 009575 281 LLLVDKKITN 290 (532)
Q Consensus 281 Ill~d~~I~~ 290 (532)
+|.+++.|.+
T Consensus 240 iL~te~~i~~ 249 (252)
T d1kp8a1 240 MITTECMVTD 249 (252)
T ss_dssp HHTEEEEEEE
T ss_pred eEeecccccC
Confidence 9999887754
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=100.00 E-value=2.7e-37 Score=303.87 Aligned_cols=123 Identities=30% Similarity=0.528 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCcccc
Q 009575 73 YAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 152 (532)
Q Consensus 73 ~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGTT 152 (532)
++++.|++++..|+++|++||||+||||||+++.|+++|||||+||++++.++||. ++++++++++|++++|||||
T Consensus 2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGtt 77 (243)
T d1a6db1 2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQDSFVGDGTT 77 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHH----HHHHHHHHTCTTCCCTTHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchH----HHHHHHHHHHHHHHhhcCCc
Confidence 68999999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccc
Q 009575 153 TSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199 (532)
Q Consensus 153 t~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~ 199 (532)
|+++|+++||+++.+++..|+||..|++||+.+.+.+++.|++++.+
T Consensus 78 t~~vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~ 124 (243)
T d1a6db1 78 TAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK 124 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999888765443
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=100.00 E-value=7.1e-38 Score=310.84 Aligned_cols=221 Identities=23% Similarity=0.330 Sum_probs=181.3
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+++..|| +++|..|+.|++.|+++|++||||+||||||++++|+|+|||||+||+++++++||. |+|+++++++
T Consensus 7 ~~~~~~g--~~a~~~~~~a~~~ia~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~a~~ 80 (258)
T d1q3qa1 7 GTQRYVG--RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKT 80 (258)
T ss_dssp TCEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHH----HHHHHHHHHH
T ss_pred CCccccC--HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEeccHHHHHHHhhhhHHH----HHHHHHHHHH
Confidence 4668888 999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhccc----ccCch-hHHHHH------hh
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK----EVEDS-ELADVA------AV 211 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~----~v~~~-~l~~va------~t 211 (532)
|++++||||||+++|+++||+++.++++.|+||..|++||+.+.+.+++.|++++. |..+. ++.... +.
T Consensus 81 ~~~~~GDGttt~~vLa~~ll~~~~~li~~G~~p~~i~~g~~~a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l~~~a~~ 160 (258)
T d1q3qa1 81 QDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQ 160 (258)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccchhHHhHHHHHhhhHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999874 34443 333332 22
Q ss_pred hcCChhhHhHHHHHHHHhhccC-----Cc---------eEEecCCCccceeeEEeeeEEe---ecccCCccccCcccCee
Q 009575 212 SAGNNYEVGNMIAEAMSKVGRK-----GV---------VTLEEGKSAENMLYVVEGMQFD---RGYISPYFVTDSEKMAV 274 (532)
Q Consensus 212 s~~~~~~is~li~eA~~~vg~~-----g~---------I~v~~G~~~~ds~~vi~G~~~~---~~~~sp~f~~~~~~~~~ 274 (532)
..+.+....+.+++|+..+.+. |. .....+++.+..+.+.+|+.+| +||.+|+|+++...+..
T Consensus 161 ~~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A 240 (258)
T d1q3qa1 161 VGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSA 240 (258)
T ss_dssp HCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhccchhhhhhhhcCCccceehhhhhhhcccCCCceEEEEECCEEeEchHcCccccHHHHHHHHHHH
Confidence 2233444456777777766431 21 1112344556677889999999 99999999876554444
Q ss_pred eccceeEeeecccCC
Q 009575 275 EYENCKLLLVDKKIT 289 (532)
Q Consensus 275 ~~~npkIll~d~~I~ 289 (532)
...+|.||.+|..|+
T Consensus 241 ~e~a~~IL~iD~iI~ 255 (258)
T d1q3qa1 241 SEAAIMILRIDDVIA 255 (258)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHhCcceeEccEEe
Confidence 566788888887654
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=100.00 E-value=5.7e-36 Score=294.89 Aligned_cols=120 Identities=31% Similarity=0.496 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhccccccCccc
Q 009575 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (532)
Q Consensus 72 ~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~~d~~~GDGT 151 (532)
.+++..|++|++.|+++|++||||+||||||.++.|++.|||||+||++++.++||. ++++++++++|+.++||||
T Consensus 5 ~~a~~~~~~~~~~i~~~v~~tlGP~G~~~~i~~~~g~~~it~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGt 80 (245)
T d1a6da1 5 KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT----AKMIVEVSKAQDTAVGDGT 80 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHH----HHHHHGGGGCTTTCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCCCCeEEeccHhHHhhhcchhhHH----HHHHHHHHHhhHHhhcccc
Confidence 789999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh
Q 009575 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ 195 (532)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~ 195 (532)
||+++|+++||+++.+++..|+||..|++||+.+++.+++.|++
T Consensus 81 tt~ivla~~ll~~~~~ll~~G~~p~~i~~g~~~a~~~a~~~L~~ 124 (245)
T d1a6da1 81 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE 124 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHCCCCchhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888764
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=8.4e-36 Score=294.88 Aligned_cols=204 Identities=43% Similarity=0.672 Sum_probs=177.9
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
+|++.|| +++|+.+++++..|+++|++||||+|+||||.+..|.|+|||||+||++.++++||++|+|++++++++.+
T Consensus 2 ~k~~~fg--~~ar~~~l~gi~~l~~~v~~tlGp~G~~v~i~~~~g~~~ITkDg~TI~~~i~~~~~~e~~~a~l~~~~a~~ 79 (252)
T d1ioka1 2 AKEVKFN--SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASR 79 (252)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCcccCC--HHHHHHHHHHHHHHHHhHHhccCCCcCeEEEEcCCCCceEEcCCceeeeccccCChHHHHHHHHHHHHHHH
Confidence 7999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch---hHHHHHhh-----hcC
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS---ELADVAAV-----SAG 214 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~---~l~~va~t-----s~~ 214 (532)
|++++||||||.++|+.+|++++.+++..|+||..+++|++.+.+.+++.|+++++++... .+.+++.+ +.+
T Consensus 80 ~~~~~gDgttt~~vla~~ll~~g~~~l~~G~~p~~i~~g~~~a~~~v~~~l~~~a~~i~~~g~~al~~~~~~l~~~~~~~ 159 (252)
T d1ioka1 80 TNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGAN 159 (252)
T ss_dssp GGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCEEETTTHHHHHHGGGGGSCCCSS
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHHcCCCcchhhhhHHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999998755 56666543 345
Q ss_pred ChhhHh-HHH--------HHHHHhhccCCceEEecCCCccceeeEEe------eeEEeecccCCccccC
Q 009575 215 NNYEVG-NMI--------AEAMSKVGRKGVVTLEEGKSAENMLYVVE------GMQFDRGYISPYFVTD 268 (532)
Q Consensus 215 ~~~~is-~li--------~eA~~~vg~~g~I~v~~G~~~~ds~~vi~------G~~~~~~~~sp~f~~~ 268 (532)
++..++ +++ .+++..+|.+|.+.++.....++....++ |+.|++||++|+|++.
T Consensus 160 ~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~~~~~~~g~~~~~~~~g~~~~~GiidP~kVt~ 228 (252)
T d1ioka1 160 SDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVR 228 (252)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEEEEHHHHTCEEEHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEeecccCcCCEEEEceeeeEeeeecccccCcHHHHH
Confidence 566666 343 55556788888776654444444445666 7788999999988753
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.5e-34 Score=259.93 Aligned_cols=144 Identities=56% Similarity=0.922 Sum_probs=142.0
Q ss_pred eeEEeecccCCccccCcccCeeeccceeEeeecccCCCHHHHHHHHHHHHhcCCCeEEEcccccHHHHHHHHHhhhcccc
Q 009575 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGAL 332 (532)
Q Consensus 253 G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~~~~el~~~le~i~~~g~~lvIia~~I~~~al~~L~~n~~~g~~ 332 (532)
||.||+||+||||++++++|.++|+||+||++|.+|++.++++|+||.+.+.+.||||++++|+++||++|+.|+++|.+
T Consensus 1 G~~~d~Gy~Sp~Fvtd~~~~~~~l~~p~ILi~d~kI~~~~~ilp~Le~~~~~~rPLlIIA~di~~eaL~~Lv~N~~~g~l 80 (145)
T d1srva_ 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL 80 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSC
T ss_pred CCccccCccCCccccCcccCEEEecCceeeecccccccHHHHHHHHHHHHHhCCcEEEEeCccCHHHHHHHHHHHhcCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEEeCceEEEEcC
Q 009575 333 KIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396 (532)
Q Consensus 333 ~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~i~g 396 (532)
+|||||+|+||+.+++.|+|||.+|||++++++.|.++++++.++||+|++|++++++|++++|
T Consensus 81 ~v~aVkaP~fG~~r~~~L~DlAi~tGa~v~~~~~g~~l~~~~~~~LGsa~kv~vtkd~T~ii~G 144 (145)
T d1srva_ 81 SVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGG 144 (145)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEeCCCccHHHHHHHhhhhhhhCCEeeccccCcccccCCHHHCCcccEEEEeCCccEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=4.8e-34 Score=282.48 Aligned_cols=225 Identities=43% Similarity=0.614 Sum_probs=192.7
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhc
Q 009575 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (532)
Q Consensus 63 ~k~i~f~~~~~~~~~~~~gv~~la~~v~stlGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~hP~~n~gakLl~e~a~~ 142 (532)
||.+.|+ +++|+.++++++.|+++|++||||+|+||||.+++|.+.|||||+||+++++++++++|.||+++++++.+
T Consensus 1 ak~~~f~--~~ar~~l~~gv~~la~av~~tlGP~G~~v~i~~~~g~~~itkdg~ti~~~i~l~d~~e~~~a~~~~~~~~~ 78 (255)
T d1we3a1 1 AKILVFD--EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASK 78 (255)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCccccC--HHHHHHHHHhHHHHHHHHhcccCCCcCeEEEEcCCCCceEecchhhhhhhccccchhhhhHHHHHHHhhhh
Confidence 5899999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCc---h--------hHHHHHhh
Q 009575 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED---S--------ELADVAAV 211 (532)
Q Consensus 143 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~---~--------~l~~va~t 211 (532)
+++++||||||+++|++++++++..++..|+||..+++|++++.+.+++.|+++++++.. . ...+....
T Consensus 79 ~~~~~gDgttt~~vl~~~~l~~~~~~i~~G~~~~~i~~g~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~ 158 (255)
T d1we3a1 79 TNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIK 158 (255)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHT
T ss_pred hHHHhhcchhHHHHHHHHHHHhhhhHHhcCCccchhhhhhhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhHhhcc
Confidence 999999999999999999999999999999999999999999999999999999887652 1 23344455
Q ss_pred hcCChhhHh-HHHHHHHHhhccC-----C---ce----EEecCCCccceeeEEeeeEEe---ecccCCccccCcccCeee
Q 009575 212 SAGNNYEVG-NMIAEAMSKVGRK-----G---VV----TLEEGKSAENMLYVVEGMQFD---RGYISPYFVTDSEKMAVE 275 (532)
Q Consensus 212 s~~~~~~is-~li~eA~~~vg~~-----g---~I----~v~~G~~~~ds~~vi~G~~~~---~~~~sp~f~~~~~~~~~~ 275 (532)
+.++++.++ +++++|+...... | .. ...........+.+.+|..+| +||++|||++++..+...
T Consensus 159 ~~~g~~~~g~~iva~Al~~~~~~~~~nag~~~~~~~~~~~~~~~~~~~g~d~~~g~~~D~~e~Giidp~~V~~~a~~~A~ 238 (255)
T d1we3a1 159 KLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAA 238 (255)
T ss_dssp TCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhhhHHHHHhhcccccceeeeeeeecccCCceeEEeeccEEeehhhcCCcCchHhhHHHHHHHH
Confidence 667787887 8899999875432 1 11 011222223355788899987 899999999987766667
Q ss_pred ccceeEeeecccCC
Q 009575 276 YENCKLLLVDKKIT 289 (532)
Q Consensus 276 ~~npkIll~d~~I~ 289 (532)
..+|.||.+|+.|.
T Consensus 239 ~~a~~iL~~d~~I~ 252 (255)
T d1we3a1 239 SIGALILTTEAVVA 252 (255)
T ss_dssp HHHHHHHTEEEEEE
T ss_pred HHhchHhhcchhhh
Confidence 88999999988764
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Probab=99.80 E-value=1.5e-19 Score=166.96 Aligned_cols=131 Identities=17% Similarity=0.300 Sum_probs=109.0
Q ss_pred ceeeEEeeeEEeecccCCccccCcccCeeeccceeEeeecccCC-------------CHHH-----------HHHHHHHH
Q 009575 246 NMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARD-----------LINVLEDA 301 (532)
Q Consensus 246 ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~-------------~~~e-----------l~~~le~i 301 (532)
|| ++++|++|++.+.++ +||..++||||++++++|+ ++++ +.++++++
T Consensus 1 DS-~li~Gvvi~k~~~~~-------~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I 72 (168)
T d1gmla_ 1 DS-CVLRGVMINKDVTHP-------RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDI 72 (168)
T ss_dssp CC-SEEEEEEESCCCSST-------TSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-EEEEEEEEecccCCc-------CCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 799999999998886 4888999999999999753 3322 35578899
Q ss_pred HhcCCCeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCcee
Q 009575 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (532)
Q Consensus 302 ~~~g~~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~ 381 (532)
.+.|+++|+++++|++.++++|.+++ |+|++ ++++++|++||++|||++++ +++++++++||+|
T Consensus 73 ~~~g~~vv~~~~~I~~~a~~~L~~~g------I~~~~-----rv~~~dl~ria~~tga~iv~-----si~~l~~~~lG~~ 136 (168)
T d1gmla_ 73 IQLKPDVVITEKGISDLAQHYLMRAN------VTAIR-----RVRKTDNNRIARACGARIVS-----RPEELREDDVGTG 136 (168)
T ss_dssp HTTCCSEEEESSCBCHHHHHHHHHTT------CEEEC-----CCCHHHHHHHHHHHCCCEES-----CGGGCCGGGSBCC
T ss_pred HhcCCceEEEcCCCCHHHHHHHHHCC------Ceeec-----cCCHHHHHHHHHHHCCceeC-----chhhcCccccccc
Confidence 99999999999999999999999874 46665 67799999999999999998 5899999999995
Q ss_pred -eEEEE---eCceEEEEcCCCCh
Q 009575 382 -SKVVL---TKDTTTIVGDGSTQ 400 (532)
Q Consensus 382 -~~v~i---~~~~~~~i~g~~~~ 400 (532)
+.++. +++.+++|.+|+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
T d1gmla_ 137 AGLLEIKKIGDEYFTFITDCKDP 159 (168)
T ss_dssp EEEEEEEEETTEEEEEEEEESST
T ss_pred ccEEEEEEECCeEEEEEEecCCC
Confidence 54443 56789999998763
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=99.76 E-value=2.3e-18 Score=156.44 Aligned_cols=125 Identities=22% Similarity=0.344 Sum_probs=108.1
Q ss_pred EeeeEEeecccCCccccCcccCeeeccceeEeeecccCC-------------CHHH-----------HHHHHHHHHhcCC
Q 009575 251 VEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARD-----------LINVLEDAIRGAY 306 (532)
Q Consensus 251 i~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I~-------------~~~e-----------l~~~le~i~~~g~ 306 (532)
++|++|++.+.|+ +||..++||+|++++++|. ++++ +.++++++...|+
T Consensus 1 i~Gvv~~k~~~~~-------~mp~~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~ 73 (152)
T d1assa_ 1 MSGIVIDKEKVHS-------KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA 73 (152)
T ss_dssp CCCEEESCCCSCT-------TSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEeCccCCC-------CCCccccCceEEEEecccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5799999998886 4888999999999999753 3333 3456889999999
Q ss_pred CeEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE
Q 009575 307 PILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL 386 (532)
Q Consensus 307 ~lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i 386 (532)
++|+++++|++.++++|.++. |.|++ ++++++|++||++|||++++ +++++++++||+|++|++
T Consensus 74 nvvl~~~~I~~~a~~~l~k~g------I~~v~-----~v~~~dl~ria~atGa~iv~-----s~~~l~~~~LG~~~~v~~ 137 (152)
T d1assa_ 74 NVVLCQKGIDDVAQHYLAKEG------IYAVR-----RVKKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEE 137 (152)
T ss_dssp SEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHTCCCBS-----STTSCCTTSCEEEEEEEE
T ss_pred ceEEEeccccHHHHHHHHHcC------Ccccc-----CCCHHHHHHHHHHhCCceeC-----CcccCCcccCeeeeEEEE
Confidence 999999999999999999873 46655 77899999999999999998 589999999999999974
Q ss_pred ---eCceEEEEcCCC
Q 009575 387 ---TKDTTTIVGDGS 398 (532)
Q Consensus 387 ---~~~~~~~i~g~~ 398 (532)
+++++++|+||+
T Consensus 138 ~~ig~~~~~~~~GCk 152 (152)
T d1assa_ 138 RKIGDDRMTFVMGCK 152 (152)
T ss_dssp EEETTEEEEEEESCC
T ss_pred EEECCEEEEEEecCC
Confidence 678999999984
|
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=99.75 E-value=2.4e-18 Score=156.44 Aligned_cols=126 Identities=20% Similarity=0.338 Sum_probs=109.3
Q ss_pred eeeEEeecccCCccccCcccCeeeccceeEeeecccC-------------CCHHHH-----------HHHHHHHHhcCCC
Q 009575 252 EGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNARDL-----------INVLEDAIRGAYP 307 (532)
Q Consensus 252 ~G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I-------------~~~~el-----------~~~le~i~~~g~~ 307 (532)
.|++|++.+.|| +||..++||||++++++| ++++++ .+.++++...|++
T Consensus 1 kGvv~~k~~~~~-------~mp~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~n 73 (153)
T d1q3qa2 1 RGVVIDKEVVHP-------RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGAN 73 (153)
T ss_dssp SSEEESCCCSST-------TSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEeCCCCCc-------cCCcccCCccEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 499999998886 588899999999999975 455443 4568888999999
Q ss_pred eEEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE-
Q 009575 308 ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL- 386 (532)
Q Consensus 308 lvIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i- 386 (532)
+|+++++|++.++++|.++ +|+|++ ++++++|++||++|||++++ +++++++++||+|+.++.
T Consensus 74 vvl~~k~I~~~a~~~l~~~------gI~~v~-----~v~~~dl~ria~~tGa~iv~-----si~~l~~~~LG~~~~~~~~ 137 (153)
T d1q3qa2 74 VVFVQKGIDDLAQHYLAKY------GIMAVR-----RVKKSDMEKLAKATGAKIVT-----NVKDLTPEDLGYAEVVEER 137 (153)
T ss_dssp EEEESSCBCHHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHCCCCBS-----SGGGCCGGGCEEESEEEEE
T ss_pred ceeecCCCcHHHHHHHHHc------CCceec-----cCCHHHHHHHHHhhCCEEec-----chhhCCcccCeeeEEEEEE
Confidence 9999999999999999987 356665 77899999999999999998 599999999999999974
Q ss_pred --eCceEEEEcCCCCh
Q 009575 387 --TKDTTTIVGDGSTQ 400 (532)
Q Consensus 387 --~~~~~~~i~g~~~~ 400 (532)
+++++++|+||++|
T Consensus 138 ~~g~~~~~~~~gc~~P 153 (153)
T d1q3qa2 138 KLAGENMIFVEGCKNP 153 (153)
T ss_dssp EETTEEEEEEECCSSC
T ss_pred EECCeeEEEEeCCCCC
Confidence 67899999999874
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=99.75 E-value=1.9e-18 Score=157.02 Aligned_cols=125 Identities=22% Similarity=0.324 Sum_probs=108.0
Q ss_pred eeEEeecccCCccccCcccCeeeccceeEeeecccC-------------CCHHH-----------HHHHHHHHHhcCCCe
Q 009575 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNARD-----------LINVLEDAIRGAYPI 308 (532)
Q Consensus 253 G~~~~~~~~sp~f~~~~~~~~~~~~npkIll~d~~I-------------~~~~e-----------l~~~le~i~~~g~~l 308 (532)
|++|++.+.|+ +||+.++||||++++++| +++++ +...++++...|+++
T Consensus 1 Gvv~~k~~~~~-------~mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nv 73 (152)
T d1a6db2 1 GIIVDKEKVHP-------GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANV 73 (152)
T ss_dssp EEEESCCCSST-------TSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEeccCCCC-------CCCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCce
Confidence 89999998886 488899999999999974 34433 355688999999999
Q ss_pred EEEcccccHHHHHHHHHhhhcccceEEEeeCCCCCccchhhHHHHHHHhCCeEeecCCCccccCCCCCCCceeeEEEE--
Q 009575 309 LIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL-- 386 (532)
Q Consensus 309 vIia~~I~~~al~~L~~n~~~g~~~i~aVk~~~~g~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~~~lG~~~~v~i-- 386 (532)
||++++|++.++++|.++. |+|++ ++++++|++||++|||++++ +++++++++||+|+.|+.
T Consensus 74 v~~~k~Idd~a~~~l~k~g------I~~v~-----~v~~~dl~rla~~tGa~iv~-----s~~~l~~~~LG~~~~v~~~~ 137 (152)
T d1a6db2 74 VITQKGIDDMAQHYLSRAG------IYAVR-----RVKKSDMDKLAKATGASIVS-----TIDEISSSDLGTAERVEQVK 137 (152)
T ss_dssp EEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHTCCEES-----CGGGCCGGGCEEEEEEEEEE
T ss_pred EEecCCCcHHHHHHHHHcC------cchhc-----cCCHHHHHHHHHHhCCeeec-----chhhCCcccCcCceEEEEEE
Confidence 9999999999999999873 46555 77899999999999999998 589999999999999984
Q ss_pred -eCceEEEEcCCCCh
Q 009575 387 -TKDTTTIVGDGSTQ 400 (532)
Q Consensus 387 -~~~~~~~i~g~~~~ 400 (532)
+++++++|+||++|
T Consensus 138 ~g~~~~~~~~gc~np 152 (152)
T d1a6db2 138 VGEDYMTFVTGCKNP 152 (152)
T ss_dssp ETTEEEEEEEEESSS
T ss_pred ECCEEEEEEeCCCCC
Confidence 67899999999874
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.63 E-value=2.1e-16 Score=147.26 Aligned_cols=105 Identities=42% Similarity=0.604 Sum_probs=80.0
Q ss_pred CcccchHHHHHHHHHhccccccCcccchHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhcccccCch--
Q 009575 126 DPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-- 203 (532)
Q Consensus 126 hP~~n~gakLl~e~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-- 203 (532)
||+||+||+|+++++.++++++||||||++||++++++++.+++..|.||..|++||++|++.+++.|+++++++.+.
T Consensus 1 d~~e~~ga~lv~~~a~~~~~~~GDGTTTatVLa~~i~~e~~~~i~~g~~p~~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~ 80 (180)
T d1sjpa1 1 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKIVAGGGV 80 (180)
T ss_dssp CHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBEEETTTT
T ss_pred CcchhHhHHHHHHHHHhhHHHcCCCchHHHHHHHHHHHHHHHHhhCCCChHHHHhhHHHHHHHHHHHHHHHHhhhcchhh
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred hHHH----HHhhhcCChhh-HhHHHHHHHHhh
Q 009575 204 ELAD----VAAVSAGNNYE-VGNMIAEAMSKV 230 (532)
Q Consensus 204 ~l~~----va~ts~~~~~~-is~li~eA~~~v 230 (532)
.+.+ +.....++++. -.+++.+|+...
T Consensus 81 ~~l~a~~al~~~~~~~~e~~g~~i~~~Al~~p 112 (180)
T d1sjpa1 81 TLLQAAPTLDELKLEGDEATGANIVKVALEAP 112 (180)
T ss_dssp TTTTTGGGGGGSCCCTHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 2222 11223334444 445667776653
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.58 E-value=9e-17 Score=131.60 Aligned_cols=86 Identities=30% Similarity=0.423 Sum_probs=77.9
Q ss_pred cCch-hHHHHHhhhcCChhhHhHHHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCc-ccCeeecc
Q 009575 200 VEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDS-EKMAVEYE 277 (532)
Q Consensus 200 v~~~-~l~~va~ts~~~~~~is~li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~-~~~~~~~~ 277 (532)
|+++ +|.+||++|+ +|..+|+||++|+.++|++|+|+++.|.+.++++++++|+.|++||.||||+++. .++...++
T Consensus 2 V~~~e~i~~VAtISa-~D~~iG~lIa~A~~kVG~dGvItvEe~~~~~t~le~veG~~~d~Gy~Sp~fvtd~k~r~e~~l~ 80 (89)
T d1sjpa3 2 VETKEQIAATAAISA-GDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEVAVIKAGAATEVELKERKHRIEDAVR 80 (89)
T ss_dssp CCSHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTSCEEEEEESSSSEEEEEESEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhhheec-CCHHHHHHHHHHHHhcCCCCceEEEeccccceEEEEEEEEEecCCccCceEEcccHHhhHHHHh
Confidence 4455 8999999998 6999999999999999999999999999999999999999999999999999964 44667799
Q ss_pred ceeEeeecc
Q 009575 278 NCKLLLVDK 286 (532)
Q Consensus 278 npkIll~d~ 286 (532)
||+||++|.
T Consensus 81 ~p~ili~dG 89 (89)
T d1sjpa3 81 NAKAAVEEG 89 (89)
T ss_dssp HHHHHHHHC
T ss_pred CceEeeecC
Confidence 999998863
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=4.2e-14 Score=114.32 Aligned_cols=73 Identities=34% Similarity=0.476 Sum_probs=68.1
Q ss_pred hHHHHHhhhcCChhhHhHHHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeecccee
Q 009575 204 ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCK 280 (532)
Q Consensus 204 ~l~~va~ts~~~~~~is~li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~npk 280 (532)
+|.+||++|+| |+.+|+||++|+.+||++|+|+++.|.+.++++++++|+.|++ +|||+++.++|.++|+||.
T Consensus 5 ~i~~VAtISAn-D~~iG~lIAeA~~kVG~dGvItVEes~t~~t~levveG~~~~~---s~~fvtd~~~~~~elenpL 77 (86)
T d1we3a3 5 AIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVGVAVIRV---GAATETELKEKKHRFEDAL 77 (86)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHTTCTTSEEEEEECSSSSCEEEEECEEEEEE---CCSSHHHHHHHHHHHHHHH
T ss_pred HHhhheeeecC-CHHHHHHHHHHHHHcCCCceEEEEecCCCCeEEEEEEeeeccc---ceeeeeehhhcEEEEeCcH
Confidence 79999999995 9999999999999999999999999999999999999998865 5899999999999999984
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.9e-14 Score=119.89 Aligned_cols=81 Identities=36% Similarity=0.497 Sum_probs=72.4
Q ss_pred ccCch-hHHHHHhhhcCChhhHhHHHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeecc
Q 009575 199 EVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYE 277 (532)
Q Consensus 199 ~v~~~-~l~~va~ts~~~~~~is~li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~ 277 (532)
|++++ +|.+||++|+|+|..+++||++|+.++|.+|+|+++.|.+.++++++++||.|++||.+|+|++++..+ +++
T Consensus 1 Pv~~~~~i~~VAtISan~D~~iG~lIa~a~~~vg~dGvitvee~~~~~~~~~ivEG~~~d~G~vS~~fvt~~te~--E~~ 78 (97)
T d1kp8a3 1 PCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATEV--EMK 78 (97)
T ss_dssp CCCSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSEEEEECCSSSSCEEEEEHHHHHHHHCEEEEECCCSSHH--HHH
T ss_pred CCCCHHHHhhheeEecCCcHHHHHHHHHHHHHhcccceEEEeccccchhHHHHHHHHHhhcCCccceeecCcchh--hhh
Confidence 67777 999999999999999999999999999999999999999999999999999999999999999876433 444
Q ss_pred ceeE
Q 009575 278 NCKL 281 (532)
Q Consensus 278 npkI 281 (532)
+++.
T Consensus 79 ekk~ 82 (97)
T d1kp8a3 79 EKKA 82 (97)
T ss_dssp HHHH
T ss_pred hcee
Confidence 4433
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.35 E-value=2.2e-14 Score=119.19 Aligned_cols=82 Identities=37% Similarity=0.428 Sum_probs=73.0
Q ss_pred ccCch-hHHHHHhhhcCChhhHhHHHHHHHHhhccCCceEEecCCCccceeeEEeeeEEeecccCCccccCcccCeeecc
Q 009575 199 EVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYE 277 (532)
Q Consensus 199 ~v~~~-~l~~va~ts~~~~~~is~li~eA~~~vg~~g~I~v~~G~~~~ds~~vi~G~~~~~~~~sp~f~~~~~~~~~~~~ 277 (532)
||+++ +|.+||++|+|+|+.+++||++|+.+||.+|+|+++.|.++++++++++||.|++||++|||+++++.+ ++.
T Consensus 1 Pv~~~~~i~~VAtISan~d~~IG~lIa~a~~~Vg~~GvitvEe~~~~~t~~~ivEG~~~~~GyiS~~fv~~~t~~--E~~ 78 (97)
T d1ioka3 1 PVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVGGMTEI--EVK 78 (97)
T ss_dssp CCCSTTTTTHHHHHTTTTCHHHHHHHHHHHHHHCTTSCCCCEECSSSCCEEEEEHHHHTTSSCEEEEEECCSSHH--HHH
T ss_pred CCCCHHHhheeeeeecCCchHHHHHHHHHHHHhCCCceEEeccccchhhhhhHhhhhhhhhccccccccCCCcee--eee
Confidence 67777 899999999999999999999999999999999999999999999999999999999999999876653 444
Q ss_pred ceeEe
Q 009575 278 NCKLL 282 (532)
Q Consensus 278 npkIl 282 (532)
++|..
T Consensus 79 ekk~~ 83 (97)
T d1ioka3 79 ERKDR 83 (97)
T ss_dssp HHHHH
T ss_pred eccce
Confidence 44433
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=1.3e-12 Score=127.54 Aligned_cols=139 Identities=34% Similarity=0.444 Sum_probs=109.8
Q ss_pred EEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHH-----------HHHHHHHhhhcCCeEEEEeCCCCHHHHHH
Q 009575 384 VVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYER-----------EKLNERIAKLSGGVAVIQVGAQTETELKE 452 (532)
Q Consensus 384 v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~~~~~e~-----------~~l~eR~a~lsg~~~tI~v~G~te~~l~E 452 (532)
..++++..+++..-..+..++.+.+++..++..+++++.. +.+.+....+ ..|..+..++++
T Consensus 45 ~~itkdg~ti~~~i~l~d~~e~~~a~~~~~~~~~~~~~~gDgttt~~vl~~~~l~~~~~~i-------~~G~~~~~i~~g 117 (255)
T d1we3a1 45 PTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNV-------AAGANPLALKRG 117 (255)
T ss_dssp CEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH-------HTTCCHHHHHHH
T ss_pred ceEecchhhhhhhccccchhhhhHHHHHHHhhhhhHHHhhcchhHHHHHHHHHHHhhhhHH-------hcCCccchhhhh
Confidence 3567776666665556677889999999999888776632 3334433332 333445788899
Q ss_pred HHHHHHHHHHHHHHHHHc-CccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhc
Q 009575 453 KKLRVEDALNATKAAVEE-GIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (532)
Q Consensus 453 ~k~~i~DAl~a~~~al~~-gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~ 530 (532)
.++++++++++++...+. +++||||+++++++..+..+.....+.+| +|+++|++||+.||+++++|+|+++.++..
T Consensus 118 ~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~~~~g~~~-~g~~iva~Al~~~~~~~~~nag~~~~~~~~ 195 (255)
T d1we3a1 118 IEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEA-TGAKIVRRALEEPARQIAENAGYEGSVIVQ 195 (255)
T ss_dssp HHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhHhhccCCChHHH-HHHHHHHHHHhhhHHHHHhhcccccceeee
Confidence 999999999999997666 49999999999999999998877666555 999999999999999999999999987654
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=2.2e-12 Score=125.73 Aligned_cols=181 Identities=24% Similarity=0.373 Sum_probs=137.1
Q ss_pred EeeCCCCC-ccchhhHHHHHHHhCCeEeecCCCccccCCCC-CCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHH
Q 009575 336 ALKAPGFG-ERKSQYLDDIAILTGGTVIRDEVGLALDKVGK-EVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTL 413 (532)
Q Consensus 336 aVk~~~~g-~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~-~~lG~~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~ 413 (532)
|+|.|.|| +.|+..|+++..++++ +...+|+.-.+.-. ...|. ..+++|.++++.+-..++.++.+++++.++
T Consensus 1 a~k~~~fg~~ar~~~l~gi~~l~~~--v~~tlGp~G~~v~i~~~~g~---~~ITkDg~TI~~~i~~~~~~e~~~a~l~~~ 75 (252)
T d1ioka1 1 AAKEVKFNSDARDRMLKGVNILADA--VKVTLGPKGRNVVIDKSFGA---PRITKDGVSVAKEIELSDKFENMGAQMVRE 75 (252)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHHHHH--HGGGCSTTCCEEEECCSSSS---CEEECCHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHh--HHhccCCCcCeEEEEcCCCC---ceEEcCCceeeeccccCChHHHHHHHHHHH
Confidence 46788999 5589999999999875 44445544332211 23332 456788788887777778899999999999
Q ss_pred HHhhhhH-----------HHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCccccCchhhhH
Q 009575 414 IENAEQD-----------YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR 482 (532)
Q Consensus 414 l~~~~~~-----------~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~gvVpGGGa~el~ 482 (532)
+...+++ +-.+.+++.+..+.+ |.++.++.+-.++..|++.....++..|++||||.++++
T Consensus 76 ~a~~~~~~~gDgttt~~vla~~ll~~g~~~l~~--------G~~p~~i~~g~~~a~~~v~~~l~~~a~~i~~~g~~al~~ 147 (252)
T d1ioka1 76 VASRTNDEAGDGTTTATVLAQAIVREGLKAVAA--------GMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQ 147 (252)
T ss_dssp HHHHGGGGCSTHHHHHHHHHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHHHHHHHHHHTTCBCEEETTTHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHc--------CCCcchhhhhHHHHHHHHHHHHHHhcCCCCCchHHhhHH
Confidence 8776433 233455555554433 678888888888888888888888888999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcc
Q 009575 483 LSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (532)
Q Consensus 483 ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~k 531 (532)
++..|.... ..+.++.+|++++.+|++.|++++++|+|.|+..++++
T Consensus 148 ~~~~l~~~~--~~~~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~ 194 (252)
T d1ioka1 148 GAKVLEGLS--GANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGK 194 (252)
T ss_dssp HGGGGGSCC--CSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhhh--cccchHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEe
Confidence 998886543 34667779999999999999999999999999988754
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=1.8e-10 Score=111.84 Aligned_cols=178 Identities=24% Similarity=0.387 Sum_probs=121.6
Q ss_pred EeeCCCCC-ccchhhHHHHHHHhCCeEeecCCCccccCCCC-CCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHH
Q 009575 336 ALKAPGFG-ERKSQYLDDIAILTGGTVIRDEVGLALDKVGK-EVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTL 413 (532)
Q Consensus 336 aVk~~~~g-~~~k~~L~~ia~~tG~~ii~~~~~~~l~~~~~-~~lG~~~~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~ 413 (532)
|.|.|.|| +.++..|++++.++++ +...+|+.-.+.-. ...| ...+++|.+++...-..++.++.+++++.++
T Consensus 1 ~ak~~~fg~dar~~ll~gi~~la~~--v~~TLGP~g~~~~i~~~~g---~~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~ 75 (252)
T d1kp8a1 1 AAKDVKFGNDAGVKMLRGVNVLADA--VKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDKFENMGAQMVKE 75 (252)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHHHHH--HHTTCSTTCCEEEECCSSS---SCEEECCHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHHhh--HHhccCCCCCeEEEEcCCC---CeEEEecchheeecccccchHHHHHHHHHHH
Confidence 46789999 7789999999999875 44445544322211 2233 2445666666655544556788888888888
Q ss_pred HHhhhhHH-----------HHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHH---cCccccCchh
Q 009575 414 IENAEQDY-----------EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE---EGIVVGGGCT 479 (532)
Q Consensus 414 l~~~~~~~-----------e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~---~gvVpGGGa~ 479 (532)
+.+...++ -++.+++-...+ -.|.+..++. +.++.|...+...++ .++.||++..
T Consensus 76 ~a~~~~~~~GDgttt~~vla~~ll~~~~~~i--------~~G~~p~~i~---~gi~~a~~~v~~~L~~~s~~i~~~~~~~ 144 (252)
T d1kp8a1 76 VASKANDAAGDGTTTATVLAQAIITEGLKAV--------AAGMNPMDLK---RGIDKAVTVAVEELKALSVGVVAGGGVA 144 (252)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH--------HTTCCHHHHH---HHHHHHHHHHHHHHHHHCBCEEETTTHH
T ss_pred HHHhhhHHhccccchhHHHHHHHHHHHHHHH--------HcCCcchhhh---hhhhhHHHHHHHHHHhcceeeccCchhh
Confidence 77654443 234444433333 3455665554 445555555555554 4899999999
Q ss_pred hhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcc
Q 009575 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (532)
Q Consensus 480 el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~k 531 (532)
.++++..+.... ..+.++.+|++++.+||+.|.+++++|+|.++.+++.+
T Consensus 145 ~v~~~~~~~~~k--~~n~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~ 194 (252)
T d1kp8a1 145 LIRVASKLADLR--GQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANT 194 (252)
T ss_dssp HHHHHHHTTTCC--CSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHH
T ss_pred hhHHHHHhhhhc--ccCccHHHhHHHHHHHHHHHHHHHHHhhhhccccccee
Confidence 999988776544 34677789999999999999999999999999988754
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=98.62 E-value=3.7e-09 Score=102.85 Aligned_cols=141 Identities=19% Similarity=0.217 Sum_probs=100.2
Q ss_pred EEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHH
Q 009575 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENA-------EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKL 455 (532)
Q Consensus 383 ~v~i~~~~~~~i~g~~~~~~i~~r~~~i~~~l~~~-------~~~~e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~ 455 (532)
.+.+++|..+++..-.-.+....-+.++-...+.. ..-...+.+++-...+..+ -+...+.+..+.
T Consensus 50 ~~~iT~Dg~ti~~~~~~~~~~a~~~~~~a~~~~~~~GDGttt~~vLa~~ll~~~~~li~~G-------~~p~~i~~g~~~ 122 (258)
T d1q3qa1 50 DIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQN-------IHPSIITKGYAL 122 (258)
T ss_dssp CEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHH
T ss_pred CeEEeccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHccccchhHHhHHHHHhhhHHHHhcC-------CChhHHHHHHHH
Confidence 34455555444443222233444444444444332 1123345666654444332 234566688899
Q ss_pred HHHHHHHHHHHHHHcCccccCchhhhHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhcc
Q 009575 456 RVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (532)
Q Consensus 456 ~i~DAl~a~~~al~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~k 531 (532)
+++++++.++......++||||++|+..+..+..++....+.++ ++++.|++||+.||+++++|+|+|+.+++.+
T Consensus 123 a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l~~~a~~~~~~~~-~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~ 197 (258)
T d1q3qa1 123 AAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEA-LAIENFADALKIIPKTLAENAGLDTVEMLVK 197 (258)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHTTHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHhhhcccchHHH-HHHHHHHHhccchhhhhhhhcCCccceehhh
Confidence 99999999998877789999999999999999999988877776 8999999999999999999999999998765
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=98.56 E-value=1.7e-08 Score=92.91 Aligned_cols=96 Identities=35% Similarity=0.532 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC--ccccCchhhhHHHHHHHHHhccCCChhH
Q 009575 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG--IVVGGGCTLLRLSSKVDAIKETLDNDEE 499 (532)
Q Consensus 422 e~~~l~eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~g--vVpGGGa~el~ls~~L~~~~~~~~~~eq 499 (532)
.+..+++.+..++. |.+.. +.++.+++|+.++...++++ .+||||..+++....+... +.++ +|
T Consensus 33 a~~i~~e~~~~i~~--------g~~p~---~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~~~l~a~~al~~~--~~~~-~e 98 (180)
T d1sjpa1 33 AQALVREGLRNVAA--------GANPL---GLKRGIEKAVEKVTETLLKGAKIVAGGGVTLLQAAPTLDEL--KLEG-DE 98 (180)
T ss_dssp HHHHHHHHHHHHHT--------TCCHH---HHHHHHHHHHHHHHHHHHHTCBEEETTTTTTTTTGGGGGGS--CCCT-HH
T ss_pred HHHHHHHHHHHhhC--------CCChH---HHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHhhh--hhhh-HH
Confidence 34455554444433 44444 56789999999999999987 9999999999887777643 3445 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhcc
Q 009575 500 KVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (532)
Q Consensus 500 ~~~~~~~a~AL~~~p~~La~NAG~d~~~vi~k 531 (532)
++++++|++||+.||++|++|||+||.+++.+
T Consensus 99 ~~g~~i~~~Al~~p~~~I~~NaG~~~~~v~~~ 130 (180)
T d1sjpa1 99 ATGANIVKVALEAPLKQIAFNSGLEPGVVAEK 130 (180)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh
Confidence 68999999999999999999999999988765
|
| >d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=98.40 E-value=3.9e-08 Score=82.79 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=62.3
Q ss_pred hHHHHHhhhcCC------hhhHhHHHHHHHHhhccC--C-------ceEE--ecCCCccceeeEEeeeEEeecccCCccc
Q 009575 204 ELADVAAVSAGN------NYEVGNMIAEAMSKVGRK--G-------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFV 266 (532)
Q Consensus 204 ~l~~va~ts~~~------~~~is~li~eA~~~vg~~--g-------~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~ 266 (532)
.|.++|+||+++ .++|++|+++|+..+.+. | .|++ .+|++++|| ++++|++|++. |
T Consensus 8 ~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~Iki~K~~Ggsv~dS-~lv~G~vl~k~---~--- 80 (107)
T d1q3qa3 8 TLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEES-ELVKAVTILIR---G--- 80 (107)
T ss_dssp HHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGC-EEESSEEEEEE---E---
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhcccCCCcccchHHEEEEEecCCChhhC-EEEccEEEEcc---C---
Confidence 799999999864 589999999999999642 1 3444 689999999 99999999983 3
Q ss_pred cCcccCeeeccceeEeeecccCC
Q 009575 267 TDSEKMAVEYENCKLLLVDKKIT 289 (532)
Q Consensus 267 ~~~~~~~~~~~npkIll~d~~I~ 289 (532)
+||..++||+|+++|+++.
T Consensus 81 ----~mp~~i~n~ki~lld~~le 99 (107)
T d1q3qa3 81 ----GTEHVIDEVERALEDAVKV 99 (107)
T ss_dssp ----SSHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcccCCcCEeeccCcHH
Confidence 4788899999999999853
|
| >d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=98.35 E-value=8.2e-08 Score=80.49 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=60.9
Q ss_pred hHHHHHhhhcCC------hhhHhHHHHHHHHhhccC--C-------ceEE--ecCCCccceeeEEeeeEEeecccCCccc
Q 009575 204 ELADVAAVSAGN------NYEVGNMIAEAMSKVGRK--G-------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFV 266 (532)
Q Consensus 204 ~l~~va~ts~~~------~~~is~li~eA~~~vg~~--g-------~I~v--~~G~~~~ds~~vi~G~~~~~~~~sp~f~ 266 (532)
.|.++|+||+++ .++|++|+++|+..+.+. | .|++ ..|++++|| ++++|+++++ +|
T Consensus 5 ~L~~va~Tsl~~K~~~~~~d~ls~l~vdAv~~v~~~~~g~~~~d~~~I~i~k~~Ggs~~dS-~lv~G~vl~k---~~--- 77 (105)
T d1a6da3 5 TLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDT-QFISAVSILI---RG--- 77 (105)
T ss_dssp HHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTC-EEESCEEEEE---CC---
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHhccccCCCceecHHHhhhhhccCCChhhe-eeeeccceec---cC---
Confidence 688999999764 589999999999999642 2 2444 699999999 9999999987 33
Q ss_pred cCcccCeeeccceeEeeecccC
Q 009575 267 TDSEKMAVEYENCKLLLVDKKI 288 (532)
Q Consensus 267 ~~~~~~~~~~~npkIll~d~~I 288 (532)
.||..++|++|+++|+++
T Consensus 78 ----~mp~~~~~~kialld~~~ 95 (105)
T d1a6da3 78 ----GTDHVVSEVERALNDAIR 95 (105)
T ss_dssp ----SSSTTHHHHHHHHHHHHH
T ss_pred ----CCCcccCCcCeeEecchh
Confidence 477788999999999864
|
| >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=98.28 E-value=3.5e-08 Score=83.11 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=60.3
Q ss_pred hHHHHHhhhcCC------hhhHhHHHHHHHHhhccC--C-------ceEE--ecCCCccceeeEEeeeEE-----eeccc
Q 009575 204 ELADVAAVSAGN------NYEVGNMIAEAMSKVGRK--G-------VVTL--EEGKSAENMLYVVEGMQF-----DRGYI 261 (532)
Q Consensus 204 ~l~~va~ts~~~------~~~is~li~eA~~~vg~~--g-------~I~v--~~G~~~~ds~~vi~G~~~-----~~~~~ 261 (532)
.|.++|+||+++ .++|++|+++|+..+.++ | .|++ .+|++++|| ++++|+++ ++...
T Consensus 7 ~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~IkI~k~~Ggs~~dS-~li~G~v~~~~~~~k~~~ 85 (107)
T d1a6db3 7 LLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDT-QLINKAVSILVRGETEHV 85 (107)
T ss_dssp HHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGC-EEESSCEEEEEEESSHHH
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhcccCCCcccCHHHeEEEeecCCChhhc-EEEeccceeeccCCceec
Confidence 788999998764 589999999999999542 1 3554 589999999 99999776 33333
Q ss_pred CCccccCcccCeeeccceeEeeecccCC
Q 009575 262 SPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (532)
Q Consensus 262 sp~f~~~~~~~~~~~~npkIll~d~~I~ 289 (532)
+| +||+.++|+ |+++||+|+
T Consensus 86 ~~-------~Mpk~i~n~-I~lld~~LE 105 (107)
T d1a6db3 86 VD-------EMERSITDS-LHVVASALE 105 (107)
T ss_dssp HH-------HHHHHHHHH-HHHHHHHHH
T ss_pred cC-------CCCccccCc-EEEEecCCc
Confidence 33 589999998 999998864
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.52 E-value=6.9e-05 Score=61.08 Aligned_cols=43 Identities=72% Similarity=0.975 Sum_probs=40.7
Q ss_pred HHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 009575 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470 (532)
Q Consensus 428 eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~ 470 (532)
||+..++|.++.+.++++++.|++|++.+++|||+|+|+|+++
T Consensus 55 EG~~~~~GyiS~~fv~~~t~~E~~ekk~~veDAl~a~raa~~e 97 (97)
T d1ioka3 55 ERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQE 97 (97)
T ss_dssp HHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccCCCceeeeeeccceeecCHHHHHHHhcC
Confidence 5788899999999999999999999999999999999999874
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00058 Score=55.52 Aligned_cols=43 Identities=79% Similarity=1.036 Sum_probs=39.8
Q ss_pred HHHhhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 009575 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470 (532)
Q Consensus 428 eR~a~lsg~~~tI~v~G~te~~l~E~k~~i~DAl~a~~~al~~ 470 (532)
+|+..++|.++.+.+++.++.|+++.+.+++|+|+|+|+|+++
T Consensus 55 EG~~~d~G~vS~~fvt~~te~E~~ekk~~veDaL~a~~aA~~e 97 (97)
T d1kp8a3 55 ERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEE 97 (97)
T ss_dssp HHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccceeecCcchhhhhhceeEEechHHHHHHHhcC
Confidence 4677788999999999999999999999999999999999874
|