Citrus Sinensis ID: 009588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MCNSNATSTTTIPILTVTDKPAQTQFDLLSLPNAIKKVSEPSSPPAVNNILPSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYTGCVDTTGLLTVDKGEEKQPLICVTVDSH
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccc
ccccccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHccccHHHHHHEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccEEEEEEccc
mcnsnatstttipiltvtdkpaqtqfdllslpnaikkvsepssppavnnilpSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGlalgmeplcsqafgaqrpkllSLTLQRSVIFLLFSSIPISLLWLNMSKILLYlhqdpnitrIAHSYLLFClpdlltnsfvhPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWAsglheptwtkptrecltgwkpllklaapscvSVCLEWWWYEIMIVLCGllvdpkstvasMGILIQTTSLIyvfpsslgfAVSTRVgnelganrpeRAKLSAVVAVFVAAIMGLSATVFASGMrdrwgrlftnDKEIIRLTSAalpilglcelgncpqtvgcgvlrgsarpsiaANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYTgcvdttglltvdkgeekqplICVTVDSH
mcnsnatstttipiltvtdkPAQTQFDLLSLPNAIKKvsepssppavNNILPSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYTGCVDTTGlltvdkgeekqplicvtvdsh
MCNSNAtstttipiltvtDKPAQTQFDLLSLPNAIKKVSEPSSPPAVNNILPSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVifllfssipisllwlNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRlgvlgvaaaaalSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAiglgfllgigfcglWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYTGCVDTTGLLTVDKGEEKQPLICVTVDSH
***********IPILTVT*******FDLL*******************NILPSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYTGCVDTTGLLTVDKGEEKQPLICVT****
**************************************************LPSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQ*********************************
*********TTIPILTVTDKPAQTQFDLLSLPNAIKKVSEPSSPPAVNNILPSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYTGCVDTTGLLTVDKGEEKQPLICVTVDSH
*********TTIPILTVTD*****************************NILPSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYT****************KQPLICVT*D**
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MCNSNATSTTTIPILTVTDKPAQTQFDLLSLPNAIKKVSEPSSPPAVNNILPSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYTGCVDTTGLLTVDKGEEKQPLICVTVDSH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query531 2.2.26 [Sep-21-2011]
Q8K0H1567 Multidrug and toxin extru yes no 0.836 0.783 0.330 2e-67
Q5I0E9566 Multidrug and toxin extru no no 0.822 0.772 0.333 3e-67
Q3V050573 Multidrug and toxin extru no no 0.900 0.834 0.328 3e-67
Q5RFD2570 Multidrug and toxin extru yes no 0.834 0.777 0.337 1e-66
A1L1P9590 Multidrug and toxin extru yes no 0.824 0.742 0.339 8e-66
Q96FL8570 Multidrug and toxin extru yes no 0.877 0.817 0.325 2e-65
A4IIS8574 Multidrug and toxin extru yes no 0.794 0.735 0.341 3e-61
A7KAU3601 Multidrug and toxin extru no no 0.881 0.778 0.334 9e-61
Q5R7E4581 Multidrug and toxin extru no no 0.851 0.777 0.339 2e-59
Q9SIA3476 MATE efflux family protei no no 0.826 0.922 0.333 1e-58
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function desciption
 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/451 (33%), Positives = 242/451 (53%), Gaps = 7/451 (1%)

Query: 50  ILPSISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANI 109
           +LP   E   E ++L  LA P  L  L+++  S +S +F GHLG LEL   +LAIA  N+
Sbjct: 27  LLPGFLE---ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINV 83

Query: 110 TGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLY 169
           TG SV  GL+   + L SQ +G+Q  K + + LQR  + LL    P   L++N  +ILL 
Sbjct: 84  TGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLL 143

Query: 170 LHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRI-YLRAQGITHPLTLASLAGTIIHLPIN 228
             QDP+++R+  +Y++  +P  L  +F++ +++ YL  QGI  P  +  +A  +++   N
Sbjct: 144 FRQDPDVSRLTQTYVMIFIPA-LPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALAN 202

Query: 229 FLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKL 288
           ++ + HL LGV+G A A  +S   +   L +YI    LH+ TW   + ECL  W   L+L
Sbjct: 203 YVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWECLQDWASFLRL 262

Query: 289 AAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRV 348
           A PS + +C+EWW YE+   L G+L      + +  I  +   ++Y+ PS    A + RV
Sbjct: 263 AIPSMLMLCIEWWAYEVGSFLSGIL--GMVELGAQSITYELAIIVYMIPSGFSVAANVRV 320

Query: 349 GNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALP 408
           GN LGA   ++AK S+ +++ V  +  ++  V   G +D  G +FT D++I+ L +  +P
Sbjct: 321 GNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDRDIVALVAQVIP 380

Query: 409 ILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQ 468
           I  +  L         G+LRG+    + A VN   +Y+ G+P+ I L F   +G  GLW 
Sbjct: 381 IYAVSHLFEGLACTCGGILRGTGNQKVGAIVNAIGYYVIGLPIGIALMFAAKLGVIGLWS 440

Query: 469 GLLAAQVCCAGLMLYVVGTTDWDFQAKRAQI 499
           G++    C     L  +   +W    ++AQ+
Sbjct: 441 GIIICTTCQTTCFLAFIARLNWKRACQQAQV 471
Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.
Mus musculus (taxid: 10090)
>sp|Q5I0E9|S47A1_RAT Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1 Back     alignment and function description
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description
>sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1 Back     alignment and function description
>sp|A4IIS8|S47A1_XENTR Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1 Back     alignment and function description
>sp|A7KAU3|S47A2_RABIT Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R7E4|S47A2_PONAB Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
255546327528 multidrug resistance pump, putative [Ric 0.981 0.986 0.756 0.0
225445078608 PREDICTED: multidrug and toxin extrusion 0.905 0.791 0.815 0.0
312282843540 unnamed protein product [Thellungiella h 0.992 0.975 0.658 0.0
449488143470 PREDICTED: multidrug and toxin extrusion 0.851 0.961 0.796 0.0
449485907538 PREDICTED: multidrug and toxin extrusion 0.845 0.834 0.804 0.0
449446807518 PREDICTED: multidrug and toxin extrusion 0.851 0.872 0.796 0.0
297803132533 hypothetical protein ARALYDRAFT_913597 [ 0.981 0.977 0.648 0.0
449436048490 PREDICTED: multidrug and toxin extrusion 0.845 0.916 0.798 0.0
15233459532 mate efflux domain-containing protein [A 0.905 0.904 0.689 0.0
356511385493 PREDICTED: multidrug and toxin extrusion 0.870 0.937 0.725 0.0
>gi|255546327|ref|XP_002514223.1| multidrug resistance pump, putative [Ricinus communis] gi|223546679|gb|EEF48177.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  810 bits (2091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/530 (75%), Positives = 461/530 (86%), Gaps = 9/530 (1%)

Query: 1   MCNSNATSTTTIPILTVTDKPAQT---QFDLLSLPNAIKKVSEPS-SPPAVNNILPSISE 56
           MCN + +++       V +KP+++     +LLSLP  IK +   +   P    I PS+SE
Sbjct: 1   MCNPDTSAS-----YVVIEKPSESGHLYLNLLSLPTTIKDLKNVTIKAPPPQEIYPSVSE 55

Query: 57  IITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLS 116
           II+E+KSLF LAFPI LTALI+YSRSI+SMLFLGHLGDLELA GSLAIAFANITGYSVLS
Sbjct: 56  IISETKSLFKLAFPIVLTALILYSRSIVSMLFLGHLGDLELAAGSLAIAFANITGYSVLS 115

Query: 117 GLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNI 176
           GLALGMEPLCSQAFGAQRPKLLS+TL R VIFLL SSIPI LLW+NMSKIL+YLHQDPNI
Sbjct: 116 GLALGMEPLCSQAFGAQRPKLLSVTLHRCVIFLLVSSIPIFLLWINMSKILVYLHQDPNI 175

Query: 177 TRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLR 236
           T +AH+YLLF LPDLLTNSF+HPIRIYLRAQGITHPLTLASLAGTI+HLPIN LLV HL+
Sbjct: 176 TSLAHTYLLFSLPDLLTNSFIHPIRIYLRAQGITHPLTLASLAGTILHLPINLLLVNHLK 235

Query: 237 LGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSV 296
           LGV G+AAAAA SN  VL SLV Y+WASGL+EPTWTKP+REC TGWKPL++LAAPSCVSV
Sbjct: 236 LGVAGIAAAAAASNFFVLLSLVSYVWASGLYEPTWTKPSRECFTGWKPLIQLAAPSCVSV 295

Query: 297 CLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANR 356
           CLEWWWYEIMI+LCGLLV+PKSTVASMGILIQTTSLIY+FPSSLGFAVSTRVGNELGANR
Sbjct: 296 CLEWWWYEIMIILCGLLVNPKSTVASMGILIQTTSLIYIFPSSLGFAVSTRVGNELGANR 355

Query: 357 PERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELG 416
           P +AKLS VVAVF++A++G+ A++FASGM+D+WG++FT+D EI+RLT+AALPILGLCELG
Sbjct: 356 PHKAKLSTVVAVFISAVIGVIASMFASGMKDKWGQMFTSDAEILRLTTAALPILGLCELG 415

Query: 417 NCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVC 476
           NCPQTVGCGVLRGSARPS AANVNL AFYL GMPVAIGLGF +G+GFCGLW GLL+AQVC
Sbjct: 416 NCPQTVGCGVLRGSARPSSAANVNLGAFYLVGMPVAIGLGFWVGVGFCGLWLGLLSAQVC 475

Query: 477 CAGLMLYVVGTTDWDFQAKRAQILTYTGCVDTTGLLTVDKGEEKQPLICV 526
           CAGLM YVVG+TDWD +AKRAQ+LT+    +   L+   +GE++Q LICV
Sbjct: 476 CAGLMFYVVGSTDWDLEAKRAQLLTHNDYDNNRILVGQSEGEKEQRLICV 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445078|ref|XP_002280364.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|312282843|dbj|BAJ34287.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|449488143|ref|XP_004157950.1| PREDICTED: multidrug and toxin extrusion protein 1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449485907|ref|XP_004157307.1| PREDICTED: multidrug and toxin extrusion protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449446807|ref|XP_004141162.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297803132|ref|XP_002869450.1| hypothetical protein ARALYDRAFT_913597 [Arabidopsis lyrata subsp. lyrata] gi|297315286|gb|EFH45709.1| hypothetical protein ARALYDRAFT_913597 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449436048|ref|XP_004135806.1| PREDICTED: multidrug and toxin extrusion protein 2-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|15233459|ref|NP_194643.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|4972060|emb|CAB43928.1| putative protein [Arabidopsis thaliana] gi|7269812|emb|CAB79672.1| putative protein [Arabidopsis thaliana] gi|29465689|gb|AAM03452.1| putative transporter NIC4 [Arabidopsis thaliana] gi|332660191|gb|AEE85591.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356511385|ref|XP_003524407.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
TAIR|locus:2183169508 AT5G19700 "AT5G19700" [Arabido 0.941 0.984 0.614 1.8e-165
TAIR|locus:2119941532 ADS1 "AT4G29140" [Arabidopsis 0.896 0.894 0.646 3.8e-165
TAIR|locus:2016615532 ZF14 "AT1G58340" [Arabidopsis 0.847 0.845 0.533 1.4e-128
TAIR|locus:2127193502 AT4G23030 "AT4G23030" [Arabido 0.881 0.932 0.515 2.1e-125
TAIR|locus:2173098505 AT5G52050 [Arabidopsis thalian 0.843 0.887 0.482 1.6e-111
TAIR|locus:2064138486 AT2G38510 "AT2G38510" [Arabido 0.832 0.909 0.469 9e-109
TAIR|locus:2013006510 AT1G71870 "AT1G71870" [Arabido 0.423 0.441 0.486 2e-102
TAIR|locus:2155179502 AT5G49130 "AT5G49130" [Arabido 0.845 0.894 0.440 3e-101
TAIR|locus:2132619491 AT4G22790 "AT4G22790" [Arabido 0.839 0.908 0.342 6.5e-67
UNIPROTKB|F1PW70578 ALDH3A2 "Uncharacterized prote 0.828 0.761 0.322 5e-60
TAIR|locus:2183169 AT5G19700 "AT5G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1610 (571.8 bits), Expect = 1.8e-165, P = 1.8e-165
 Identities = 309/503 (61%), Positives = 381/503 (75%)

Query:    27 DLLSLPNAIKKVSEPSSPPAVNNILPSISEIITESKSLFNLAFPIALTALIIYSRSILSM 86
             +++S  N + K+      PA   I P+I+E+ +E++SLF+LAFP  L ALI+Y+RS +SM
Sbjct:     5 NIISHTNLLSKIDLEKQNPAP--IFPTITELKSEARSLFSLAFPTILAALILYARSAISM 62

Query:    87 LFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSV 146
             LFLGH+G+LELAGGSLAIAFANITGYSVL+GLALGM+PLCSQAFGA RPKLLSLTLQR+V
Sbjct:    63 LFLGHIGELELAGGSLAIAFANITGYSVLAGLALGMDPLCSQAFGAGRPKLLSLTLQRTV 122

Query:   147 XXXXXXXXXXXXXXXNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRA 206
                            N+ KI++YLHQDP+I+ +A +Y+L  +PDLLTNSF+HP+RIYLRA
Sbjct:   123 LFLLTSSVVIVALWLNLGKIMIYLHQDPSISSLAQTYILCSIPDLLTNSFLHPLRIYLRA 182

Query:   207 QGITHPLTLASLAGTIIHLPINFLLVTHLRXXXXXXXXXXXXSNLCVLFSLVVYIWASGL 266
             QGIT PLTLA+LAGTI H+P+NF LV++L             SNL V+  LV ++W +GL
Sbjct:   183 QGITSPLTLATLAGTIFHIPMNFFLVSYLGWGFMGVSMAAAASNLLVVIFLVAHVWIAGL 242

Query:   267 HEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGIL 326
             H+PTWT+P+ EC   W P++ LA PSC+ VCLEWWWYEIM VLCGLL+DP + VASMGIL
Sbjct:   243 HQPTWTRPSSECFKDWGPVVTLAIPSCIGVCLEWWWYEIMTVLCGLLIDPSTPVASMGIL 302

Query:   327 IQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMR 386
             IQTTSL+Y+FPSSLG AVSTRVGNELG+NRP +A+LSA+VAV  A +MGL+A+ FA G+ 
Sbjct:   303 IQTTSLLYIFPSSLGLAVSTRVGNELGSNRPNKARLSAIVAVSFAGVMGLTASAFAWGVS 362

Query:   387 DRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYL 446
             D WG +FTND  II+LT+AALPILGLCELGNCPQTVGCGV+RG+ARPS+AAN+NL AFYL
Sbjct:   363 DVWGWIFTNDVAIIKLTAAALPILGLCELGNCPQTVGCGVVRGTARPSMAANINLGAFYL 422

Query:   447 AGMPVAXXXXXXXXXXXXXXWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYTGCV 506
              G PVA              W GLLAAQ+CCA +MLYVV TTDW+ +A RA+ LT T  V
Sbjct:   423 VGTPVAVGLTFWAAYGFCGLWVGLLAAQICCAAMMLYVVATTDWEKEAIRARKLTCTEGV 482

Query:   507 DTTGLLTVDKGEEKQPLI-CVTV 528
             D     T   G+  +PLI  VTV
Sbjct:   483 DVVITTTQTNGDLSEPLIYVVTV 505
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2119941 ADS1 "AT4G29140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016615 ZF14 "AT1G58340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127193 AT4G23030 "AT4G23030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173098 AT5G52050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064138 AT2G38510 "AT2G38510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013006 AT1G71870 "AT1G71870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155179 AT5G49130 "AT5G49130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132619 AT4G22790 "AT4G22790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PW70 ALDH3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96FL8S47A1_HUMANNo assigned EC number0.32580.87750.8175yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016655001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (530 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-174
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-56
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-56
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-49
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 3e-38
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-38
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-32
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-29
pfam01554161 pfam01554, MatE, MatE 1e-27
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 6e-26
pfam01554161 pfam01554, MatE, MatE 1e-25
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-25
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-23
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-20
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 1e-18
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 3e-17
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 4e-15
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 6e-15
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 3e-09
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-09
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 7e-09
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 7e-08
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 1e-07
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 6e-07
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 2e-06
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 9e-06
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-05
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 1e-04
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-04
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 2e-04
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 4e-04
COG0534 455 COG0534, NorM, Na+-driven multidrug efflux pump [D 6e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.001
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  499 bits (1287), Expect = e-174
 Identities = 200/437 (45%), Positives = 290/437 (66%), Gaps = 1/437 (0%)

Query: 60  ESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLA 119
           E+K L  LA P+ LT+L+ YS S++S++F+GHLG LELA  SLA +FAN+TG+S+L GLA
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 120 LGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRI 179
             ++ LC QAFGA+  KL+ + LQR+++ LL   +PISLLWLN   ILL L QDP I R+
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 180 AHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGV 239
           A  YL + +P L   +   P++ YL+AQGI  PL   SL   ++++ +N+LLV  L LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 240 LGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLE 299
           +G A A ++S   ++  L++YI+ S  H+ TW   +RE   GW P LKLA PS + +CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 300 WWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPER 359
           WW +EI+++L GLL      +A+  I + TTSL+Y+ P  +  A S RVGNELGA  P+R
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 360 AKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCP 419
           AKL+A+VA+ ++ ++G+   +    +RD W  LFT+D+E+I L +  LPIL L ++ +  
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 420 QTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAG 479
           Q V  GVLRG  R  + A VNL A+YL G+PV + L F+LG+G  GLW GL+A  +  A 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 480 LMLYVVGTTDWDFQAKR 496
           ++L ++  TDWD +A++
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 531
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.98
PRK10459492 colanic acid exporter; Provisional 99.97
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.87
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.87
PRK00187464 multidrug efflux protein NorA; Provisional 99.86
PRK10189 478 MATE family multidrug exporter; Provisional 99.86
PRK01766 456 multidrug efflux protein; Reviewed 99.86
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.85
TIGR01695502 mviN integral membrane protein MviN. This model re 99.81
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.8
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.77
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.74
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.74
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.71
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.7
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.69
PRK10459492 colanic acid exporter; Provisional 99.68
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.65
PRK15099416 O-antigen translocase; Provisional 99.64
COG2244480 RfbX Membrane protein involved in the export of O- 99.57
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.38
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.31
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.18
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.83
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.5
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.44
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.19
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.03
COG4267467 Predicted membrane protein [Function unknown] 98.03
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.92
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.88
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.86
COG4267 467 Predicted membrane protein [Function unknown] 81.21
PF12794340 MscS_TM: Mechanosensitive ion channel inner membra 80.15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-55  Score=444.93  Aligned_cols=437  Identities=25%  Similarity=0.345  Sum_probs=414.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcc
Q 009588           57 IITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPK  136 (531)
Q Consensus        57 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  136 (531)
                      .++..|+++++++|++++++++.+++++|++++||+|++++++.+++.++..+. ..+..|++.|..+.+||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            357899999999999999999999999999999999999999999999999998 8999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 009588          137 LLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTL  215 (531)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~  215 (531)
                      ++++..++++.++++++++..++ +.+.++++.+++.++|+.+.+..|+++..++.|+..+..+..+++|+.||++.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999888776 99999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cC-cccchhHHHHHHHHHHHHHHHHHHHHHcCC-CccccCCCCHHHHhcHHHHHHhHhhH
Q 009588          216 ASLAGTIIHLPINFLLVTH-LR-LGVLGVAAAAALSNLCVLFSLVVYIWASGL-HEPTWTKPTRECLTGWKPLLKLAAPS  292 (531)
Q Consensus       216 ~~i~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~i~~~~~p~  292 (531)
                      .++++.++|++++++|+++ ++ +|+.|+++||++++.+..++.++++.++++ ......+..+++++..|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999888764 22222223366889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 009588          293 CVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAA  372 (531)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~  372 (531)
                      .+++......+...+.+++++|+  +++|+|+++.++.++.+++..|++++.+|.+++++|+||+|++++..+.++.++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999976  9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHH
Q 009588          373 IMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVA  452 (531)
Q Consensus       373 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  452 (531)
                      .+++..+++++++++++..+|++|+++.+.+..++++.++..++++++.+..+++|+.||++.++..++++.|++.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 009588          453 IGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRA  497 (531)
Q Consensus       453 ~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~  497 (531)
                      +.+.... +|..|+|++...++.+..++..+++++.+|++...+.
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            9998877 8999999999999999999999999999998776543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 4e-10
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 1e-07
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 88/418 (21%), Positives = 172/418 (41%), Gaps = 37/418 (8%)
Query: 53  SISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGY 112
           S+     E+ +L  LA P+ + ++       +  +  G +  +++A  S+A   A+I   
Sbjct: 3   SVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIA---ASIWLP 59
Query: 113 SVLSGLALGME--PLCSQAFGAQRPKLLSLTLQRSVXXXXXXXXXXXXXXXNMSKILLYL 170
           S+L G+ L M   P+ +Q  GA R   +   + + +                   I+ ++
Sbjct: 60  SILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFM 119
Query: 171 HQDPNITRIAHSYL---LFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPI 227
             +  +      Y+   +F +P  L       +R +     +T P  +    G ++++P+
Sbjct: 120 DVEEAMATKTVGYMHAVIFAVPAYL---LFQALRSFTDGMSLTKPAMVIGFIGLLLNIPL 176
Query: 228 NFLLVTHLRXXXXXXXXXXXXSNLCV----LFSLVVYIWASGLHE-----PTWTKPTREC 278
           N++ V                +   V    L  L+ YI  S          T+ KP  + 
Sbjct: 177 NWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKE 236
Query: 279 LTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDP--KSTVASMGILIQTTSLIYVF 336
           L     L +L  P   ++  E      +  +  LLV P   + VA+  + +  +SL+++F
Sbjct: 237 LI---RLFRLGFPVAAALFFE----VTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMF 289
Query: 337 PSSLGFAVSTRVGNELGANRPERAKLSAVVAVF----VAAIMGLSATVFASGMRDRWGRL 392
           P S+G AVS RVG++LG    + A ++A V +      A I  L   +F    R++   L
Sbjct: 290 PMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLF----REQIALL 345
Query: 393 FTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMP 450
           +T ++ ++ L    L    + +  +  Q V  G LRG    +   +    ++++ G+P
Sbjct: 346 YTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLP 403
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-88
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  279 bits (715), Expect = 1e-88
 Identities = 86/442 (19%), Positives = 181/442 (40%), Gaps = 14/442 (3%)

Query: 53  SISEIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGY 112
           S+     E+ +L  LA P+ + ++       +  +  G +  +++A  S+A +   +   
Sbjct: 3   SVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSI 61

Query: 113 SVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQ 172
               GL + + P+ +Q  GA R   +   + + +I  L  S+PI  +      I+ ++  
Sbjct: 62  LFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDV 121

Query: 173 DPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLV 232
           +  +      Y+   +  +        +R +     +T P  +    G ++++P+N++ V
Sbjct: 122 EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFV 181

Query: 233 THL----RLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEP--TWTKPTRECLTGWKPLL 286
                   LG +G   A A+    +L  L+ YI  S        +    +        L 
Sbjct: 182 YGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLF 241

Query: 287 KLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVST 346
           +L  P   ++  E   + ++ +L   L    + VA+  + +  +SL+++FP S+G AVS 
Sbjct: 242 RLGFPVAAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSI 299

Query: 347 RVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAA 406
           RVG++LG    + A ++A V +           +     R++   L+T ++ ++ L    
Sbjct: 300 RVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQL 359

Query: 407 LPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFL-----LGI 461
           L    + +  +  Q V  G LRG    +   +    ++++ G+P    LG         +
Sbjct: 360 LLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPL 419

Query: 462 GFCGLWQGLLAAQVCCAGLMLY 483
           G  G W G +      A ++  
Sbjct: 420 GAKGFWLGFIIGLSAAALMLGQ 441
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.81
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 86.2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=3.9e-48  Score=398.06  Aligned_cols=431  Identities=20%  Similarity=0.350  Sum_probs=398.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCc
Q 009588           56 EIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRP  135 (531)
Q Consensus        56 ~~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~  135 (531)
                      ..++..|++++.++|.++++++..+++.+|+.+++++|++++|+++++.++..+. ..+..|++++..+.+++++|++|+
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~   84 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ   84 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence            3467899999999999999999999999999999999999999999999998876 788899999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 009588          136 KLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTL  215 (531)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~  215 (531)
                      ++.++.+++++.+.++.++++.+++.+.++++.+++.+++..+.+..|+++++++.++..+.....+++++.||++.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999998877777888888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-c---CcccchhHHHHHHHHHHHHHHHHHHHHHcCCCc-cc-cCCCCHHHHhcHHHHHHhH
Q 009588          216 ASLAGTIIHLPINFLLVTH-L---RLGVLGVAAAAALSNLCVLFSLVVYIWASGLHE-PT-WTKPTRECLTGWKPLLKLA  289 (531)
Q Consensus       216 ~~i~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~k~i~~~~  289 (531)
                      .++++.++|++++++++.. +   ++|+.|+++++++++.+..++..++++++++.+ .+ +.++.+++++..|+++++|
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            9999999999999999975 3   699999999999999999998877777654432 11 2233355788999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 009588          290 APSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVF  369 (531)
Q Consensus       290 ~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~  369 (531)
                      +|.+++.+...+.+.+++.+++.+++  +++|+|++++++.++...+..+++++..|.+++++|++|.+++++..+++.+
T Consensus       245 ~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~  322 (460)
T 3mkt_A          245 FPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM  322 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999965  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHH
Q 009588          370 VAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGM  449 (531)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  449 (531)
                      +.+.++++.++++.++++++..+|++|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  402 (460)
T 3mkt_A          323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL  402 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888899999999999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHHH----hc-CCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 009588          450 PVAIGLGFL----LG-IGFCGLWQGLLAAQVCCAGLMLYVVGTTD  489 (531)
Q Consensus       450 ~~~~~l~~~----~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~~~  489 (531)
                      |+.+++...    ++ +|..|+|+++.+++++..++..++++|..
T Consensus       403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999877    66 99999999999999999888877665543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 87.54
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=87.54  E-value=9.9  Score=34.40  Aligned_cols=27  Identities=15%  Similarity=0.228  Sum_probs=16.2

Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHH
Q 009588          459 LGIGFCGLWQGLLAAQVCCAGLMLYVV  485 (531)
Q Consensus       459 ~~~g~~G~~~a~~~~~~i~~~~~~~~~  485 (531)
                      ..+|..+..+......++..++.....
T Consensus       405 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         405 DFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            446777776666666665555554443