Citrus Sinensis ID: 009601
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | 2.2.26 [Sep-21-2011] | |||||||
| P21241 | 588 | RuBisCO large subunit-bin | N/A | no | 0.983 | 0.887 | 0.866 | 0.0 | |
| P21240 | 600 | Chaperonin 60 subunit bet | yes | no | 0.983 | 0.87 | 0.870 | 0.0 | |
| Q9LJE4 | 596 | Chaperonin 60 subunit bet | no | no | 0.979 | 0.872 | 0.866 | 0.0 | |
| C0Z361 | 597 | Chaperonin 60 subunit bet | no | no | 0.979 | 0.871 | 0.864 | 0.0 | |
| P08927 | 595 | RuBisCO large subunit-bin | N/A | no | 0.964 | 0.860 | 0.847 | 0.0 | |
| Q43831 | 499 | RuBisCO large subunit-bin | N/A | no | 0.796 | 0.847 | 0.893 | 0.0 | |
| Q9C667 | 611 | Chaperonin 60 subunit bet | no | no | 0.885 | 0.769 | 0.665 | 0.0 | |
| Q119S1 | 561 | 60 kDa chaperonin 1 OS=Tr | yes | no | 0.879 | 0.832 | 0.609 | 1e-159 | |
| Q2JKV7 | 539 | 60 kDa chaperonin 2 OS=Sy | yes | no | 0.877 | 0.864 | 0.617 | 1e-159 | |
| Q2JXD4 | 542 | 60 kDa chaperonin 1 OS=Sy | yes | no | 0.877 | 0.859 | 0.614 | 1e-159 |
| >sp|P21241|RUBB_BRANA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/533 (86%), Positives = 492/533 (92%), Gaps = 11/533 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSV--ALRRARTP 58
MASTFTA SSI SM+APN TDKKL NKLSS SSFGRRQ+V LRR+
Sbjct: 1 MASTFTATSSIGSMVAPNAHKTDKKLM---NKLSS------SSFGRRQNVFPKLRRSSPA 51
Query: 59 KIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 VVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+G+MIAEAMS+VGRKGVVTL
Sbjct: 172 TRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGY+SPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENALYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLG+A+KVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
TLLRL+SKVDAIK LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 472 TLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 524
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This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Brassica napus (taxid: 3708) |
| >sp|P21240|CPNB1_ARATH Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60B1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/533 (87%), Positives = 492/533 (92%), Gaps = 11/533 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALR--RARTP 58
MASTFTA SSI SM+APNG +DKKL S SSSSFGRRQSV R R+ +
Sbjct: 1 MASTFTATSSIGSMVAPNGHKSDKKLISKL---------SSSSFGRRQSVCPRPRRSSSA 51
Query: 59 KIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG +++LQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 IVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTL
Sbjct: 172 TRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
TLLRL+SKVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 524
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Binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Involved in protein assisted folding. Required for proper plastid division. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJE4|CPNB2_ARATH Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/531 (86%), Positives = 493/531 (92%), Gaps = 11/531 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTA SS+ S++APN + KLSS SISSSSFGRR +V +RR+R +
Sbjct: 1 MASTFTATSSLGSLLAPN-----------AIKLSSATSISSSSFGRRHNVCVRRSRPAIV 49
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+
Sbjct: 50 CAAKELHFNKDGTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITR
Sbjct: 110 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITR 169
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT+KALV+ELK MSKEVEDSELADVAAVSAGNN+EVG+MIAEAMSKVGRKGVVTLEE
Sbjct: 170 GIEKTAKALVNELKLMSKEVEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEE 229
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VEY+NCKLLLVDKK+TNARDL+ VLED
Sbjct: 230 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKVTNARDLVGVLED 289
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG T
Sbjct: 290 AIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGAT 349
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VIR+EVGL+LDK GKEVLGNASKVVLTK+ TTIVGDG+TQ+AV+KRV QIR LIE AEQD
Sbjct: 350 VIREEVGLSLDKAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQD 409
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 410 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 469
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LRL+SKVDAIK+TL+NDEEKVGA+IVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 470 LRLASKVDAIKDTLENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEK 520
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Involved in protein assisted folding. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0Z361|CPNB3_ARATH Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana GN=CPN60B3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/531 (86%), Positives = 489/531 (92%), Gaps = 11/531 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTF+A SS+ S +AP SN+LSS SISSSSFGR QS+A R+AR PKI
Sbjct: 1 MASTFSATSSMGSSLAP-----------PSNRLSSFVSISSSSFGRTQSIAQRKARFPKI 49
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
YAAK LHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+
Sbjct: 50 YAAKQLHFNKDGTAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAA+KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR
Sbjct: 110 EVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 169
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNNYEVGNMIAEAM+KVGRKGVVTLEE
Sbjct: 170 GIEKTTKALVAELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMAKVGRKGVVTLEE 229
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSAEN LYVVEGMQFDRGYISPYFVTDSEKM EYENCKL LVDKKITNARD+I++LED
Sbjct: 230 GKSAENSLYVVEGMQFDRGYISPYFVTDSEKMCAEYENCKLFLVDKKITNARDIISILED 289
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AI+G YP+LIIAEDIEQE LATLVVNKLRG +K+AALKAPGFGERKSQYLDDIA LTG T
Sbjct: 290 AIKGGYPLLIIAEDIEQEPLATLVVNKLRGTIKVAALKAPGFGERKSQYLDDIAALTGAT 349
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VIR+EVGL L+KVG EVLGNA KVVLTKDTTTIVGDGST++ V KRV QI+ LIE AEQD
Sbjct: 350 VIREEVGLQLEKVGPEVLGNAGKVVLTKDTTTIVGDGSTEEVVKKRVEQIKNLIEAAEQD 409
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 410 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 469
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LRL+SKVDAIKETL NDEEKVGADIVK+AL YPLKLIAKNAGVNGSVVSEK
Sbjct: 470 LRLASKVDAIKETLANDEEKVGADIVKKALSYPLKLIAKNAGVNGSVVSEK 520
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Involved in protein assisted folding. Arabidopsis thaliana (taxid: 3702) |
| >sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2 | Back alignment and function description |
|---|
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/537 (84%), Positives = 485/537 (90%), Gaps = 25/537 (4%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSF--GRRQS---VALRRA 55
MASTF+A +SS LSS A+ISS G+R + V R+
Sbjct: 1 MASTFSA-------------------TTSSCNLSSSAAISSFPLAAGKRNANKVVLPRKN 41
Query: 56 RTPKIYA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVND 114
R K+ A AK+LHFNKDG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVND
Sbjct: 42 RNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVND 101
Query: 115 GVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGAN 174
GVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGAN
Sbjct: 102 GVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGAN 161
Query: 175 PVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKG 234
PVLITRGIEKTSKALV+ELK+MSKEVEDSELADVAAVSAGNN+EVGNMIAEA+SKVGRKG
Sbjct: 162 PVLITRGIEKTSKALVAELKKMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKG 221
Query: 235 VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDL 294
VVTLEEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKM VE+ENCKLLLVDKKITNARDL
Sbjct: 222 VVTLEEGKSAENSLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKITNARDL 281
Query: 295 INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 354
IN+LEDAIR +PI+IIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIA
Sbjct: 282 INILEDAIRSGFPIVIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIA 341
Query: 355 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLI 414
ILTGGTVIR+EVGL LDK KEVLGNA+KVVLTKDTTTIVGDGSTQ+AV+KRV+QI+ I
Sbjct: 342 ILTGGTVIREEVGLTLDKADKEVLGNAAKVVLTKDTTTIVGDGSTQEAVNKRVSQIKNQI 401
Query: 415 ENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVV 474
E AEQ+YE+EKL+ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVV
Sbjct: 402 EAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVV 461
Query: 475 GGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
GGGCTLLRL+SKVDAIK+TL NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 462 GGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 518
|
This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Pisum sativum (taxid: 3888) |
| >sp|Q43831|RUBB_SECCE RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/423 (89%), Positives = 407/423 (96%)
Query: 109 PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV 168
P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV
Sbjct: 1 PQIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV 60
Query: 169 VAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMS 228
+AAGANPV ITRGIEKT+KALV ELK+MSKEVEDSELADVAAVSAGNNYE+GNMIAEAMS
Sbjct: 61 IAAGANPVQITRGIEKTAKALVLELKKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMS 120
Query: 229 KVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI 288
KVGRKGVVTLEEG+S+EN LYVVEGMQF+RGYISPYFVTDSEKM EYENCKLLLVDKKI
Sbjct: 121 KVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMTTEYENCKLLLVDKKI 180
Query: 289 TNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348
TNARDLINVLE+AIRG YPILIIAEDIEQEALATLVVNKLRG+LKI A+KAPGFGERK+Q
Sbjct: 181 TNARDLINVLEEAIRGQYPILIIAEDIEQEALATLVVNKLRGSLKICAIKAPGFGERKTQ 240
Query: 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVA 408
YLDDIAILTGGTVIRDEVGL LDK VLG A+KVVLTK++TTIVGDGSTQ+ V+KRVA
Sbjct: 241 YLDDIAILTGGTVIRDEVGLTLDKADNTVLGTAAKVVLTKESTTIVGDGSTQEEVTKRVA 300
Query: 409 QIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAV 468
QI+ LIE AEQDYE+EKLNERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAAV
Sbjct: 301 QIKNLIEAAEQDYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAV 360
Query: 469 EEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528
EEGIVVGGGCTLLRL++KVDAIK+TL+NDE+KVGA+IV+RALCYPLKLIAKNAGVNGSVV
Sbjct: 361 EEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVV 420
Query: 529 SEK 531
+EK
Sbjct: 421 TEK 423
|
This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Secale cereale (taxid: 4550) |
| >sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/470 (66%), Positives = 399/470 (84%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++HFN+DG KKLQ G + +A L+GVTLGPKGRNVVL++KYG P+IVNDG TV KE
Sbjct: 39 AAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKE 98
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELEDP+EN+G KLVRQA AKTNDLAGDG+TTS++LA GLI EG+KV++AG NP+ + RG
Sbjct: 99 IELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARG 158
Query: 182 IEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
IEKT+KALV ELK MS+E+ED ELA VAAVSAGN+YEVGNMI+ A +VGR GVVT+E+G
Sbjct: 159 IEKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKG 218
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
K N L +VEGMQF+RGY+SPYFVTD K E+ +CKLLLVDKKITN +D+ +L+ A
Sbjct: 219 KYLVNNLEIVEGMQFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILDSA 278
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
++ +P+LI+AEDIEQ+ALA ++ NKL+G LK+AA+KAP FGERKS LDD+AI TG TV
Sbjct: 279 VKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGATV 338
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
IRDE+GL+L+K GKEVLG A +V++TKD+T IV +G TQ AV +RV+QI+ LIEN E+++
Sbjct: 339 IRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEENF 398
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+++ LNER+A+LSGG+A+IQVGA T+ ELK+K+L+VEDALNATK+A+EEGIVVGGGC LL
Sbjct: 399 QKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCALL 458
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
RL++KVD IKETLDN E+K+GA+I K+AL YP++LIAKNA NG++V EK
Sbjct: 459 RLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEK 508
|
Involved specifically in the folding of NDHH, a subunit of the chloroplast NADH dehydrogenase-like complex (NDH). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q119S1|CH601_TRIEI 60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust.
Identities = 286/469 (60%), Positives = 367/469 (78%), Gaps = 2/469 (0%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + F D + + L+ G+N LAD V +T+GPKGRNV+LE KYGAP+IVNDG+TVAK++
Sbjct: 2 AKIVEF--DDKSRRSLERGINTLADAVRITMGPKGRNVLLEKKYGAPQIVNDGITVAKDI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELEDP+EN GAKL+++ A+KT D+AGDGTTT+ VLAQ +I EG+K VAAGANPV + RGI
Sbjct: 60 ELEDPLENTGAKLIQEVASKTKDIAGDGTTTATVLAQSMIKEGLKNVAAGANPVAVRRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGK 242
EKT LV E++ ++K VE +A VA VSAG + EVG MI+EAM KV + GV+T+EE K
Sbjct: 120 EKTVSLLVKEIQTVAKPVEGEAIAQVATVSAGGDAEVGRMISEAMDKVTKDGVITVEESK 179
Query: 243 SAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302
S L VVEGMQ DRGY+SPYFVTD E++ V++EN ++L+ DKKI++ +DL+ VLE
Sbjct: 180 SLSTDLEVVEGMQIDRGYLSPYFVTDQERLVVDFENARILITDKKISSIQDLVPVLEKVA 239
Query: 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVI 362
R +LIIAEDIE EALATLVVNK RG L +AA+KAPGFG+R+ L DIAILTGG +I
Sbjct: 240 RAGQSLLIIAEDIEGEALATLVVNKARGVLNVAAVKAPGFGDRRKAMLQDIAILTGGQLI 299
Query: 363 RDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422
+EVGL+L+ V +++G K+ + KD TTIV DG T + V KR+AQIR + ++ DY+
Sbjct: 300 SEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYD 359
Query: 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR 482
+EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAAVEEGIV GGG TL+
Sbjct: 360 KEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIH 419
Query: 483 LSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LS+KV+ +K +L+N+EEK+GADIV+RAL PL IA N+GV GSV+ EK
Sbjct: 420 LSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEK 468
|
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Trichodesmium erythraeum (strain IMS101) (taxid: 203124) |
| >sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust.
Identities = 290/470 (61%), Positives = 367/470 (78%), Gaps = 4/470 (0%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + F ++ A K L+ G+N+LAD + VT+GPKGRNVVLE K+GAP+IVNDGVT+AKE+
Sbjct: 2 AKRILFREE--ARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
EL DP+EN GA+L+R+ A+KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGI
Sbjct: 60 ELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EKT+ LV ++ +K VE + +A+VA +SAGN+ EVG MIA+AM VGR GV+T+EE
Sbjct: 120 EKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEES 179
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS E L VVEGMQFDRGYISPYFVTDSE+M EYEN LL+ KI++ +DL+ +LE
Sbjct: 180 KSLETELDVVEGMQFDRGYISPYFVTDSERMVAEYENAYLLITSNKISSLQDLVPILERV 239
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
R P+L+IAED+E EALATLVVN+LRG L A+KAP FG+R+ L+DIAILTGG +
Sbjct: 240 AREGRPLLVIAEDVEGEALATLVVNRLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQL 299
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I ++VG+ LDKV +++G A K+ +TKD TTIV DGST+ AV KRVAQIR +E + +Y
Sbjct: 300 ISEDVGIKLDKVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEY 359
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AAVEEGIV GGG TLL
Sbjct: 360 DREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLL 419
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LS + A K L N EE+VGA+IV RAL PL IA NAG+ GSVV EK
Sbjct: 420 HLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEK 468
|
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332) |
| >sp|Q2JXD4|CH601_SYNJA 60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 561 bits (1446), Expect = e-159, Method: Compositional matrix adjust.
Identities = 289/470 (61%), Positives = 364/470 (77%), Gaps = 4/470 (0%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + F ++ A K L+ G+N+LAD V VT+GPKGRNV+LE K+GAP+IVNDGVT+AKE+
Sbjct: 2 AKQILFREE--ARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
EL DP+EN GA+L+R+ A KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGI
Sbjct: 60 ELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EKT+ LV ++ +K VE + +A+VA +SAGN+ EVG MIA AM VGR GV+T+EE
Sbjct: 120 EKTTAYLVEQIAAQAKPVEGRKNIAEVATISAGNDPEVGEMIARAMDAVGRDGVITVEES 179
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS E L VVEGMQFDRGYISPYFVTD+E+M EYEN LL+ K++N +DL+ VLE
Sbjct: 180 KSLETQLEVVEGMQFDRGYISPYFVTDTERMVAEYENAYLLITSNKLSNLQDLVPVLERV 239
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
R P+L+IAED+E EALATLVVNKLRG L A+KAP FG+R+ L+DIAILTGG +
Sbjct: 240 AREGRPLLVIAEDVEGEALATLVVNKLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQL 299
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I +++G+ L+ V +++G A K+ +TKD TTIV DGST+ AV KRVAQIR +E + +Y
Sbjct: 300 ISEDIGIKLENVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEY 359
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AAVEEGIV GGG TLL
Sbjct: 360 DREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLL 419
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LS + A K L N EE+VGADIV RAL PL IA NAG+ GSVV EK
Sbjct: 420 HLSKGIPAFKANL-NAEEQVGADIVCRALQAPLYQIAHNAGLEGSVVVEK 468
|
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | ||||||
| 255564820 | 605 | rubisco subunit binding-protein beta sub | 0.994 | 0.872 | 0.917 | 0.0 | |
| 224073124 | 607 | predicted protein [Populus trichocarpa] | 1.0 | 0.874 | 0.903 | 0.0 | |
| 449452644 | 608 | PREDICTED: ruBisCO large subunit-binding | 1.0 | 0.873 | 0.898 | 0.0 | |
| 449493562 | 608 | PREDICTED: LOW QUALITY PROTEIN: ruBisCO | 1.0 | 0.873 | 0.898 | 0.0 | |
| 224052861 | 607 | predicted protein [Populus trichocarpa] | 1.0 | 0.874 | 0.890 | 0.0 | |
| 225435794 | 608 | PREDICTED: ruBisCO large subunit-binding | 1.0 | 0.873 | 0.907 | 0.0 | |
| 297853250 | 600 | CPN60B [Arabidopsis lyrata subsp. lyrata | 0.983 | 0.87 | 0.876 | 0.0 | |
| 134104 | 588 | RecName: Full=RuBisCO large subunit-bind | 0.983 | 0.887 | 0.866 | 0.0 | |
| 1762130 | 599 | chaperonin-60 beta subunit [Solanum tube | 0.983 | 0.871 | 0.870 | 0.0 | |
| 225442531 | 609 | PREDICTED: ruBisCO large subunit-binding | 1.0 | 0.871 | 0.857 | 0.0 |
| >gi|255564820|ref|XP_002523404.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] gi|223537354|gb|EEF38983.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/532 (91%), Positives = 513/532 (96%), Gaps = 4/532 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSS+ S++APN DKK AS+SN+LSS ASIS S+FGRRQ+V LRR+R+PKI
Sbjct: 1 MASTFTAMSSVGSLVAPN---VDKKFASTSNRLSSFASISGSAFGRRQNVVLRRSRSPKI 57
Query: 61 YA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
A AKDLHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVA
Sbjct: 58 CAMAKDLHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA 117
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 118 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 177
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKTSKALV+ELK MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMS+VGRKGVVTLE
Sbjct: 178 RGIEKTSKALVTELKSMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSRVGRKGVVTLE 237
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EGKSAEN LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIN+LE
Sbjct: 238 EGKSAENSLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILE 297
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIRG YPIL+IAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG
Sbjct: 298 DAIRGGYPILVIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 357
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TV+R+EVGL+LDKVGKE+LGNASKVVLTKDTTTIVGDGSTQ+AV+KRVAQIR LIE AEQ
Sbjct: 358 TVVREEVGLSLDKVGKEILGNASKVVLTKDTTTIVGDGSTQEAVTKRVAQIRNLIEAAEQ 417
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
DYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 418 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 477
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LLRL+SKVDAIK++LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 478 LLRLASKVDAIKDSLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 529
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073124|ref|XP_002303983.1| predicted protein [Populus trichocarpa] gi|222841415|gb|EEE78962.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/531 (90%), Positives = 508/531 (95%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSS+ ++ APNGR+ DKK SSNKLSS ASIS+S FGR Q+V L R+R K+
Sbjct: 1 MASTFTAMSSVGTLAAPNGRVMDKKFVFSSNKLSSFASISASRFGRPQNVVLPRSRPLKV 60
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAK
Sbjct: 61 NAAKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 120
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR
Sbjct: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT++ALV+ELK MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE
Sbjct: 181 GIEKTTRALVNELKLMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSA+N LYVVEGMQFDRGYISPYFVTDSEKM+VEYENCKLLLVDKKITNARDLI++LED
Sbjct: 241 GKSADNSLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKITNARDLISILED 300
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AIR YP+LIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT
Sbjct: 301 AIRAGYPVLIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
V+R+EVGLALDKVGKEVLG+ASKVVLTKDTTTIVGDGSTQ+AV+KRVAQIR LIE AEQD
Sbjct: 361 VVREEVGLALDKVGKEVLGHASKVVLTKDTTTIVGDGSTQEAVNKRVAQIRNLIEAAEQD 420
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LRL+SKVDAIK++L+NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 481 LRLASKVDAIKDSLENDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 531
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452644|ref|XP_004144069.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/532 (89%), Positives = 508/532 (95%), Gaps = 1/532 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSSI ++ AP R+ DKKL SSS+KL+S SISS + +RQSV LRR R+ KI
Sbjct: 1 MASTFTAMSSIGTLAAPGSRVMDKKLLSSSDKLTSRTSISSFALPKRQSVVLRRNRSSKI 60
Query: 61 YA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
A AK+LHFN+DG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVA
Sbjct: 61 SAMAKELHFNQDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA 120
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 121 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 180
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKT+KALVSELK+MSKEVEDSELADVAAVSAGNN+EVGNMIAEAMSKVGRKGVVTLE
Sbjct: 181 RGIEKTAKALVSELKKMSKEVEDSELADVAAVSAGNNHEVGNMIAEAMSKVGRKGVVTLE 240
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EG+SA+N LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIN+LE
Sbjct: 241 EGRSADNFLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILE 300
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIRG YP++I+AEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGG
Sbjct: 301 DAIRGGYPVVIMAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGG 360
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TVIR+EVGL+LDK GKEVLGNASK+VLTKDTTTIVGDGSTQ+AVSKRVAQI+ LIE AEQ
Sbjct: 361 TVIREEVGLSLDKAGKEVLGNASKIVLTKDTTTIVGDGSTQEAVSKRVAQIKNLIEVAEQ 420
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
DYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 421 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 480
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LLRL+SKVDAIKET +NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 481 LLRLASKVDAIKETFENDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 532
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449493562|ref|XP_004159350.1| PREDICTED: LOW QUALITY PROTEIN: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/532 (89%), Positives = 506/532 (95%), Gaps = 1/532 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSSI ++ AP R DKKL SSS+KL+S SISS + +RQSV LRR R+ KI
Sbjct: 1 MASTFTAMSSIGTLAAPGSRAMDKKLLSSSDKLTSRTSISSFALPKRQSVVLRRNRSSKI 60
Query: 61 YA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
A AK+LHFN+DG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVA
Sbjct: 61 SAMAKELHFNQDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA 120
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 121 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 180
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKT+KALVSELK MSKEVEDSELADVAAVSAGNN+EVGNMIAEAMSKVGRKGVVTLE
Sbjct: 181 RGIEKTAKALVSELKXMSKEVEDSELADVAAVSAGNNHEVGNMIAEAMSKVGRKGVVTLE 240
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EG+SA+N LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIN+LE
Sbjct: 241 EGRSADNFLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILE 300
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIRG YP++I+AEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGG
Sbjct: 301 DAIRGGYPVVIMAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGG 360
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TVIR+EVGL+LDK GKEVLGNASK+VLTKDTTTIVGDGSTQ+AVSKRVAQI+ LIE AEQ
Sbjct: 361 TVIREEVGLSLDKAGKEVLGNASKIVLTKDTTTIVGDGSTQEAVSKRVAQIKNLIEVAEQ 420
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
DYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 421 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 480
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LLRL+SKVDAIKET +NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 481 LLRLASKVDAIKETFENDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 532
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224052861|ref|XP_002297617.1| predicted protein [Populus trichocarpa] gi|118486341|gb|ABK95011.1| unknown [Populus trichocarpa] gi|222844875|gb|EEE82422.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/531 (89%), Positives = 505/531 (95%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTAMSS ++ APN R DKK A SSNKLSS ASIS+S FGR Q+V L R+R+ K+
Sbjct: 1 MASTFTAMSSAGTLAAPNARALDKKFAFSSNKLSSFASISASRFGRPQNVVLPRSRSLKV 60
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG A++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAK
Sbjct: 61 NAAKELHFNKDGSAIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 120
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR
Sbjct: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT++ALV+ELK MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE
Sbjct: 181 GIEKTTRALVNELKLMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSA+N LYVVEGMQFDRGYISPYFVTDSEKMAVEY+NCKLLLVDKKITNARDLI +LED
Sbjct: 241 GKSADNSLYVVEGMQFDRGYISPYFVTDSEKMAVEYDNCKLLLVDKKITNARDLIAILED 300
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AI+G YP++I+AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT
Sbjct: 301 AIKGGYPVVIVAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
V+R+EVGLALDKVG EVLG+ASKVVLTKDTTTIV DGSTQ+AV+KRVAQI+ LIE AEQD
Sbjct: 361 VVREEVGLALDKVGSEVLGHASKVVLTKDTTTIVADGSTQEAVNKRVAQIKNLIEAAEQD 420
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 421 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LRL+SKVDAIK++L+NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 481 LRLASKVDAIKDSLENDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 531
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435794|ref|XP_002285746.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [Vitis vinifera] gi|297746501|emb|CBI16557.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/532 (90%), Positives = 509/532 (95%), Gaps = 1/532 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MAS FT MSS+ S+ AP GR DKKLA+SS++LSS ASISSSSFGRRQ+V LRR R+P+I
Sbjct: 1 MASAFTTMSSVGSLAAPGGRGMDKKLATSSDRLSSFASISSSSFGRRQNVVLRRTRSPRI 60
Query: 61 YA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
A AKDL+FNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVA
Sbjct: 61 NAMAKDLYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA 120
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 121 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 180
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKT+K+LV+ELK +SKEVEDSELADVAAVSAGNN+EVGNMIAEAMSKVGRKGVVTLE
Sbjct: 181 RGIEKTTKSLVAELKLISKEVEDSELADVAAVSAGNNHEVGNMIAEAMSKVGRKGVVTLE 240
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EGKSAEN LYVVEGMQFDRGYISPYFVTDSEKMAVE+ENCKLLLVDKKITNARDLINVLE
Sbjct: 241 EGKSAENHLYVVEGMQFDRGYISPYFVTDSEKMAVEFENCKLLLVDKKITNARDLINVLE 300
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIRG YPILIIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGG
Sbjct: 301 DAIRGGYPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGG 360
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TVIRDEVGL LDK KEVLG+A+KVVLTKDTTTIVGDGSTQ+AV+KRVAQIR LIE AEQ
Sbjct: 361 TVIRDEVGLTLDKAEKEVLGHAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIRNLIEAAEQ 420
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
+YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 421 EYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 480
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LLRL+SKVDAIK+TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 481 LLRLASKVDAIKDTLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 532
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297853250|ref|XP_002894506.1| CPN60B [Arabidopsis lyrata subsp. lyrata] gi|297340348|gb|EFH70765.1| CPN60B [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/533 (87%), Positives = 494/533 (92%), Gaps = 11/533 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALR--RARTP 58
MASTFTA SSI SM+APNG +DKKL NKLSS SSFGRRQSV R R+ +
Sbjct: 1 MASTFTATSSIGSMVAPNGHKSDKKLM---NKLSS------SSFGRRQSVCPRPRRSGSA 51
Query: 59 KIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 IVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTL
Sbjct: 172 TRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
TLLRL+SKVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 524
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|134104|sp|P21241.1|RUBB_BRANA RecName: Full=RuBisCO large subunit-binding protein subunit beta, chloroplastic; AltName: Full=60 kDa chaperonin subunit beta; AltName: Full=CPN-60 beta; Flags: Precursor gi|167117|gb|AAA32980.1| 60-kDa beta-polypeptide of plastid chaperonin-60 precursor [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/533 (86%), Positives = 492/533 (92%), Gaps = 11/533 (2%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSV--ALRRARTP 58
MASTFTA SSI SM+APN TDKKL NKLSS SSFGRRQ+V LRR+
Sbjct: 1 MASTFTATSSIGSMVAPNAHKTDKKLM---NKLSS------SSFGRRQNVFPKLRRSSPA 51
Query: 59 KIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 VVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+G+MIAEAMS+VGRKGVVTL
Sbjct: 172 TRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGY+SPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENALYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLG+A+KVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
TLLRL+SKVDAIK LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 472 TLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 524
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1762130|gb|AAB39827.1| chaperonin-60 beta subunit [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/532 (87%), Positives = 495/532 (93%), Gaps = 10/532 (1%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTF MSS + AP ++SSNKLSS+A+ISS+SFG +++VALR++R P I
Sbjct: 1 MASTFAGMSSAGPLAAP---------STSSNKLSSVANISSTSFGSKRNVALRKSRRPTI 51
Query: 61 YAA-KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 119
AA K+LHFNKDG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA
Sbjct: 52 LAAAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVA 111
Query: 120 KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 179
+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
Sbjct: 112 REVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT 171
Query: 180 RGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 239
RGIEKT+KALV+ELK MSKEVEDSELADVAAVSAGNN EVG+MIAEAMSKVGRKGVVTLE
Sbjct: 172 RGIEKTAKALVAELKNMSKEVEDSELADVAAVSAGNNLEVGSMIAEAMSKVGRKGVVTLE 231
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299
EGKSAEN L VVEGMQFDRGY+SPYFVTDSEKM+VEYENCKLLLVDKKITNARDL+NVLE
Sbjct: 232 EGKSAENSLRVVEGMQFDRGYVSPYFVTDSEKMSVEYENCKLLLVDKKITNARDLVNVLE 291
Query: 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 359
DAIR YPILIIAEDIEQEALATLVVNKLRGALK+AALKAPGFGERKSQYLDDIA LTGG
Sbjct: 292 DAIRNGYPILIIAEDIEQEALATLVVNKLRGALKVAALKAPGFGERKSQYLDDIATLTGG 351
Query: 360 TVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419
TVIR+E+GL LDK KEVLG+A+KVVLTKD TTIVGDGSTQ+AV+KRVAQI+ LIE A+Q
Sbjct: 352 TVIREELGLTLDKADKEVLGHAAKVVLTKDATTIVGDGSTQEAVNKRVAQIKNLIEAADQ 411
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 479
DYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
Sbjct: 412 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 471
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LLRL++KVDAIK TL NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 472 LLRLAAKVDAIKGTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 523
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442531|ref|XP_002284134.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [Vitis vinifera] gi|297743227|emb|CBI36094.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/533 (85%), Positives = 495/533 (92%), Gaps = 2/533 (0%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSF-GRRQSVALRRARTPK 59
MAS+F MSSI + + DKK SS +LSS ASIS++SF GR+QS+ L++ +PK
Sbjct: 1 MASSFATMSSIGYFTSSSSHTMDKKFLGSSRRLSSFASISANSFEGRKQSMVLQKRCSPK 60
Query: 60 IYA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ A AK+L+FNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTV
Sbjct: 61 VRAMAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV 120
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGA+LVRQAA+KTNDLAGDGTTTSVVLAQGLI EGVKVVAAGANPV I
Sbjct: 121 AREVELEDPVENIGARLVRQAASKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVQI 180
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIE T+KALV+ELK MSKEVEDSELADVAAVSAGNNYEVG MIAEAM +VGRKGVVTL
Sbjct: 181 TRGIENTTKALVAELKLMSKEVEDSELADVAAVSAGNNYEVGYMIAEAMGQVGRKGVVTL 240
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL
Sbjct: 241 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 300
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAI+G YPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG
Sbjct: 301 EDAIKGGYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 360
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
GTVIR+EVGL+LDK KEVLG+A+KVVLTKDTTTIVGDGSTQ+AV+KRVAQIR L+E A+
Sbjct: 361 GTVIREEVGLSLDKAEKEVLGHAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIRNLVEAAD 420
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
Sbjct: 421 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 480
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
TLLRL++KVDAIK+TLD+DE+KVGADIVKRAL YP+KLIAKNAGVNGSVV EK
Sbjct: 481 TLLRLAAKVDAIKDTLDSDEQKVGADIVKRALSYPMKLIAKNAGVNGSVVIEK 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | ||||||
| TAIR|locus:2193839 | 600 | CPN60B "chaperonin 60 beta" [A | 0.983 | 0.87 | 0.836 | 1.8e-222 | |
| TAIR|locus:2092825 | 596 | Cpn60beta2 "chaperonin-60beta2 | 0.979 | 0.872 | 0.828 | 2e-221 | |
| TAIR|locus:2028751 | 611 | Cpn60beta4 "chaperonin-60beta4 | 0.885 | 0.769 | 0.646 | 1.6e-164 | |
| UNIPROTKB|Q05972 | 541 | groL1 "60 kDa chaperonin 1" [S | 0.877 | 0.861 | 0.551 | 3.5e-130 | |
| TIGR_CMR|CBU_1718 | 552 | CBU_1718 "chaperonin, 60 kDa" | 0.875 | 0.842 | 0.531 | 3.6e-128 | |
| TIGR_CMR|GSU_3340 | 544 | GSU_3340 "60 kDa chaperonin" [ | 0.873 | 0.852 | 0.544 | 1.6e-127 | |
| TIGR_CMR|CHY_0807 | 540 | CHY_0807 "chaperonin GroL" [Ca | 0.877 | 0.862 | 0.541 | 5.3e-127 | |
| UNIPROTKB|Q9KNR7 | 544 | groL1 "60 kDa chaperonin 1" [V | 0.873 | 0.852 | 0.543 | 7.8e-126 | |
| TIGR_CMR|SPO_0887 | 546 | SPO_0887 "chaperonin, 60 kDa" | 0.875 | 0.851 | 0.546 | 7.8e-126 | |
| TIGR_CMR|VC_2664 | 544 | VC_2664 "chaperonin, 60 Kd sub | 0.873 | 0.852 | 0.543 | 7.8e-126 |
| TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2148 (761.2 bits), Expect = 1.8e-222, P = 1.8e-222
Identities = 446/533 (83%), Positives = 473/533 (88%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPK- 59
MASTFTA SSI SM+APNG +D FGRRQSV R R+
Sbjct: 1 MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSS---------FGRRQSVCPRPRRSSSA 51
Query: 60 -IYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTV 118
+ AAK+LHFNKDG +++LQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTV
Sbjct: 52 IVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTV 111
Query: 119 AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 178
A+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLI
Sbjct: 112 AREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLI 171
Query: 179 TRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTL 238
TRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTL
Sbjct: 172 TRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTL 231
Query: 239 EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL 298
EEGKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VL
Sbjct: 232 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVL 291
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG 358
EDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG
Sbjct: 292 EDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTG 351
Query: 359 GTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418
TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AE
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411
Query: 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXC 478
QDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA C
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471
Query: 479 TLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
TLLRL+SKVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 524
|
|
| TAIR|locus:2092825 Cpn60beta2 "chaperonin-60beta2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2138 (757.7 bits), Expect = 2.0e-221, P = 2.0e-221
Identities = 440/531 (82%), Positives = 472/531 (88%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPKI 60
MASTFTA SS+ S++APN FGRR +V +RR+R +
Sbjct: 1 MASTFTATSSLGSLLAPNA-----------IKLSSATSISSSSFGRRHNVCVRRSRPAIV 49
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+
Sbjct: 50 CAAKELHFNKDGTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITR
Sbjct: 110 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITR 169
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT+KALV+ELK MSKEVEDSELADVAAVSAGNN+EVG+MIAEAMSKVGRKGVVTLEE
Sbjct: 170 GIEKTAKALVNELKLMSKEVEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEE 229
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VEY+NCKLLLVDKK+TNARDL+ VLED
Sbjct: 230 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKVTNARDLVGVLED 289
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG T
Sbjct: 290 AIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGAT 349
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VIR+EVGL+LDK GKEVLGNASKVVLTK+ TTIVGDG+TQ+AV+KRV QIR LIE AEQD
Sbjct: 350 VIREEVGLSLDKAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQD 409
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA CTL
Sbjct: 410 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 469
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LRL+SKVDAIK+TL+NDEEKVGA+IVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 470 LRLASKVDAIKDTLENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEK 520
|
|
| TAIR|locus:2028751 Cpn60beta4 "chaperonin-60beta4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1601 (568.6 bits), Expect = 1.6e-164, P = 1.6e-164
Identities = 304/470 (64%), Positives = 389/470 (82%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++HFN+DG KKLQ G + +A L+GVTLGPKGRNVVL++KYG P+IVNDG TV KE
Sbjct: 39 AAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKE 98
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELEDP+EN+G KLVRQA AKTNDLAGDG+TTS++LA GLI EG+KV++AG NP+ + RG
Sbjct: 99 IELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARG 158
Query: 182 IEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
IEKT+KALV ELK MS+E+ED ELA VAAVSAGN+YEVGNMI+ A +VGR GVVT+E+G
Sbjct: 159 IEKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKG 218
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
K N L +VEGMQF+RGY+SPYFVTD K E+ +CKLLLVDKKITN +D+ +L+ A
Sbjct: 219 KYLVNNLEIVEGMQFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILDSA 278
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
++ +P+LI+AEDIEQ+ALA ++ NKL+G LK+AA+KAP FGERKS LDD+AI TG TV
Sbjct: 279 VKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGATV 338
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
IRDE+GL+L+K GKEVLG A +V++TKD+T IV +G TQ AV +RV+QI+ LIEN E+++
Sbjct: 339 IRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEENF 398
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLL 481
+++ LNER+A+LSGG+A+IQVGA T+ ELK+K+L+VEDALNATK+A C LL
Sbjct: 399 QKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCALL 458
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
RL++KVD IKETLDN E+K+GA+I K+AL YP++LIAKNA NG++V EK
Sbjct: 459 RLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEK 508
|
|
| UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
Identities = 259/470 (55%), Positives = 349/470 (74%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + +N + A + L+ G++ LA+ V VTLGPKGRNVVLE K+G+P+I+NDG+T+AKE+
Sbjct: 2 AKSIIYNDE--ARRALERGMDILAEAVAVTLGPKGRNVVLEKKFGSPQIINDGITIAKEI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELED VEN G L+RQAA+KTND+AGDGTTT+ VLA ++ EG++ VAAGANP+ + RGI
Sbjct: 60 ELEDHVENTGVSLIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
+K + LV+ +K+ ++ V DS+ +A V A+SAGN+ EVG MIA AM KVG++GV++LEEG
Sbjct: 120 DKATDFLVARIKEHAQPVGDSKAIAQVGAISAGNDEEVGQMIANAMDKVGQEGVISLEEG 179
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS L + EGM+FD+GYISPYFVTD+E+M E+ ++L+ DKKI +DL+ +LE
Sbjct: 180 KSMTTELEITEGMRFDKGYISPYFVTDAERMEAVLEDPRILITDKKINLVQDLVPILEQV 239
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
R P+LIIAEDIE+EALATLVVN+LRG L +AA+KAPGFG+R+ Q L+DIA LTGG V
Sbjct: 240 ARQGKPLLIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKQMLEDIATLTGGQV 299
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I ++ GL L+ + LG+A ++ +TKD TTIV +G+ + AV R QIR IE + Y
Sbjct: 300 ISEDAGLKLESATVDSLGSARRINITKDNTTIVAEGN-EAAVKSRCEQIRRQIEETDSSY 358
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLL 481
++EKL ER+AKL+GGVAVI+VGA TETE+K++KLR+EDA+NATKAA TL
Sbjct: 359 DKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLA 418
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
L+ +++ DEE GA IV RAL PLK IA+NAG NG+V+SE+
Sbjct: 419 HLAPQLEDWATGNLKDEELTGALIVARALPAPLKRIAENAGQNGAVISER 468
|
|
| TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
Identities = 251/472 (53%), Positives = 348/472 (73%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK L F+ + + + GV LA+ V VTLGPKGRNVVL+ +GAP I DGV+VAKE
Sbjct: 2 AAKVLKFSHE--VLHAMSRGVEVLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A++T+D AGDGTTT+ VLAQ ++ EG+K V AG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVKEVASRTSDDAGDGTTTATVLAQAILVEGIKAVIAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K A V+ELK++SK +D + +A V +SA ++ +G++IAEAM KVG++GV+T+E+
Sbjct: 120 IDKAVTAAVAELKKISKPCKDQKAIAQVGTISANSDKSIGDIIAEAMEKVGKEGVITVED 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
G EN L VVEGMQFDRGY+SPYF+ + + M+ E EN +LLVDKKI+N R+LI +LE+
Sbjct: 180 GSGLENALEVVEGMQFDRGYLSPYFINNQQNMSAELENPFILLVDKKISNIRELIPLLEN 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+L+IAEDIE EALATLVVN +RG +K+AA+KAPGFG+R+ L DIA+LTGG
Sbjct: 240 VAKSGRPLLVIAEDIEGEALATLVVNNIRGVVKVAAVKAPGFGDRRKAMLQDIAVLTGGK 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQ 419
VI +EVGL+L+ + LG+A +VV+TKD TTI+ G G D + RV QIR IEN+
Sbjct: 300 VISEEVGLSLEAASLDDLGSAKRVVVTKDDTTIIDGSGDAGD-IKNRVEQIRKEIENSSS 358
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCT 479
DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA
Sbjct: 359 DYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVA 418
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
L+R+ +D+++ ++N++++VG +I +RA+ YPL I KN GV +VV++K
Sbjct: 419 LIRVLKSLDSVE--VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADK 468
|
|
| TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
Identities = 257/472 (54%), Positives = 343/472 (72%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AA+ + F+++G + GVN LAD V VTLGPKGRNVV+E +G+P I DGVTVAKE
Sbjct: 2 AARIIKFDQEG--RNAILKGVNTLADAVKVTLGPKGRNVVIEKAFGSPLITKDGVTVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ + +G K+VAAG NP+ I RG
Sbjct: 60 IELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRG 119
Query: 182 IEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K + +V+ELK +SK ++D E+A V +SA N+ +G++IA+AM KVG++GV+T+EE
Sbjct: 120 IDKAVETIVAELKSISKPIKDHKEIAQVGTISANNDKTIGDIIAQAMEKVGKEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K+ E L VEGMQFDRGY+SPYFVTD E+M EN +L+ DKKI+N +DL+ VLE
Sbjct: 180 AKAMETSLETVEGMQFDRGYLSPYFVTDPERMEASLENAMILIHDKKISNMKDLLPVLEQ 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+LIIAEDIE EALATLVVNKLRG L I A+KAPGFG+R+ L+DIAILTGG
Sbjct: 240 TAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQ 419
VI +E+G L+ ++LG A ++ + KD TTI+ GDG D + RV QIR IE
Sbjct: 300 VISEEIGNKLENTTMDMLGRAKRITVDKDNTTIIDGDGKEAD-IQGRVKQIRAQIEETTS 358
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCT 479
DY+REKL ER+AKL GGVAVI+VGA TETE+KEKK RVEDAL+AT+AA
Sbjct: 359 DYDREKLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALHATRAAVDEGIVPGGGVA 418
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LR + +DA+ +L E++ G +++KR+L P++ IA+NAGV+GS+V +K
Sbjct: 419 YLRALASLDAL--SLPT-EQQFGVNVIKRSLEEPIRQIAQNAGVDGSIVVDK 467
|
|
| TIGR_CMR|CHY_0807 CHY_0807 "chaperonin GroL" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
Identities = 255/471 (54%), Positives = 339/471 (71%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
A K + F +D A + L+ GVN LAD V VTLGPKGRNVVLE K+G+P+I+NDGV++A+E
Sbjct: 2 AGKQILFRED--ARRALERGVNALADAVKVTLGPKGRNVVLEKKFGSPQIINDGVSIARE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+EL DPVEN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+++ +G
Sbjct: 60 IELADPVENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVTAGANPMILRKG 119
Query: 182 IEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
IEK V E+K ++K VE SE +A VAA+SA N+ E+G +IAEAM KVG+ GV+T+EE
Sbjct: 120 IEKAVAKAVEEIKAIAKPVETSEAIAQVAAISA-NDEEIGKLIAEAMEKVGKDGVITVEE 178
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
+ L VVEGM FDRGYISPY +TD +KM + +L+ DKKI+ DL+ +LE
Sbjct: 179 SQGLGTTLEVVEGMSFDRGYISPYMITDPDKMEAILNDPYILITDKKISAIADLLPILEK 238
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P+LIIAED+E EALATLVVNKLRG L A+KAPGFG+R+ L+DIAILT G
Sbjct: 239 VVQTGKPLLIIAEDVEGEALATLVVNKLRGTLTCVAVKAPGFGDRRKAMLEDIAILTNGQ 298
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
V+ +E+G L+ +LG A +V + K+ T IVG + +A+ KR+AQI+ IE D
Sbjct: 299 VVSEELGFKLENATLSMLGRAKQVRVKKEETIIVGGQGSPEAIEKRIAQIKKQIEETTSD 358
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTL 480
++REKL ER+AKL+GGVAVIQVGA TETE+KEKKLR+EDALNAT+AA T
Sbjct: 359 FDREKLQERLAKLAGGVAVIQVGAATETEMKEKKLRIEDALNATRAAVEEGIVAGGGTTY 418
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
+ + ++ +++T DE + G IV++AL PLK IA NAG+ GSV+ EK
Sbjct: 419 IHIIKALEELEKTATGDE-RTGIAIVRKALEEPLKQIAINAGLEGSVIVEK 468
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| UNIPROTKB|Q9KNR7 groL1 "60 kDa chaperonin 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 255/469 (54%), Positives = 339/469 (72%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F D A K+ GVN LAD V VTLGPKGRNVVL+ +GAP I DGV+VA+E
Sbjct: 2 AAKDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVARE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED +N+GA++V++ A++ ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 60 IELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K A V ELK +S D++ +A V +SA ++ VGN+IAEAM KVGR GV+T+EE
Sbjct: 120 IDKAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
G++ ++ L VVEGMQFDRGY+SPYF+ + E +VE +N +LLVDKKI+N R+L+ VLE
Sbjct: 180 GQALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEG 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VAKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGV 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +E+GL L+K E LG A +V +TK+ +TI+ Q A+ RVAQIR IE A D
Sbjct: 300 VISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTL 480
Y++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA L
Sbjct: 360 YDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVS 529
+R +SK+ ++ DN+E+ VG + RA+ PL+ I KNAG SVV+
Sbjct: 420 IRAASKLSSLVG--DNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVA 466
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| TIGR_CMR|SPO_0887 SPO_0887 "chaperonin, 60 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 258/472 (54%), Positives = 344/472 (72%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ FN + A K+ GVN LAD V VTLGPKGRNVVL+ +GAP+I DGV+VAKE
Sbjct: 2 AAKDVKFNTE--ARNKMLKGVNILADAVKVTLGPKGRNVVLDKSFGAPRITKDGVSVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A++TND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ + +V +K S+ V DS E+A V +SA E+G IAEAM KVG +GV+T+EE
Sbjct: 120 IDLATAKVVEAIKAASRPVNDSAEVAQVGTISANGESEIGRQIAEAMQKVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K E VVEGMQFDRGY+SPYFVT+++KM E E+C +LL +KK+++ + ++ +LE
Sbjct: 180 NKGLETETDVVEGMQFDRGYLSPYFVTNADKMIAELEDCMILLHEKKLSSLQPMVPLLEQ 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
I+ P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA-VSKRVAQIRTLIENAEQ 419
VI +++G+ L+ V ++LG A K+ +TKD TTIV DG+ + A + RVAQIRT IE
Sbjct: 300 VISEDLGMKLESVTMDMLGTAKKISITKDETTIV-DGAGEKAEIEARVAQIRTQIEETTS 358
Query: 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCT 479
DY+REKL ER+AKL+GGVAVI+VG TE E+KE+K RV+DALNAT+AA
Sbjct: 359 DYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGVVVGGGVA 418
Query: 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
L++ + KV A E N ++ G +IV++A+ PL+ IA+NAGV+G+VV+ K
Sbjct: 419 LVQ-AGKVLADLEGA-NADQTAGINIVRKAIEAPLRQIAENAGVDGAVVAGK 468
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| TIGR_CMR|VC_2664 VC_2664 "chaperonin, 60 Kd subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 255/469 (54%), Positives = 339/469 (72%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F D A K+ GVN LAD V VTLGPKGRNVVL+ +GAP I DGV+VA+E
Sbjct: 2 AAKDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVARE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED +N+GA++V++ A++ ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 60 IELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K A V ELK +S D++ +A V +SA ++ VGN+IAEAM KVGR GV+T+EE
Sbjct: 120 IDKAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
G++ ++ L VVEGMQFDRGY+SPYF+ + E +VE +N +LLVDKKI+N R+L+ VLE
Sbjct: 180 GQALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEG 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VAKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGV 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +E+GL L+K E LG A +V +TK+ +TI+ Q A+ RVAQIR IE A D
Sbjct: 300 VISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTL 480
Y++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA L
Sbjct: 360 YDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVS 529
+R +SK+ ++ DN+E+ VG + RA+ PL+ I KNAG SVV+
Sbjct: 420 IRAASKLSSLVG--DNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVA 466
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A4IJV3 | CH60_GEOTN | No assigned EC number | 0.5765 | 0.8719 | 0.8574 | yes | no |
| Q2JKV7 | CH602_SYNJB | No assigned EC number | 0.6170 | 0.8775 | 0.8645 | yes | no |
| Q05972 | CH601_SYNY3 | No assigned EC number | 0.5702 | 0.8775 | 0.8613 | N/A | no |
| Q8YVS8 | CH602_NOSS1 | No assigned EC number | 0.6008 | 0.8719 | 0.8267 | yes | no |
| B0CFQ6 | CH601_ACAM1 | No assigned EC number | 0.6129 | 0.8738 | 0.8315 | yes | no |
| Q7WVY0 | CH602_ANASL | No assigned EC number | 0.5751 | 0.8719 | 0.8312 | N/A | no |
| Q0I885 | CH601_SYNS3 | No assigned EC number | 0.5543 | 0.8775 | 0.8426 | yes | no |
| A5G9I2 | CH60_GEOUR | No assigned EC number | 0.5562 | 0.8719 | 0.8433 | yes | no |
| P22034 | CH602_SYNY3 | No assigned EC number | 0.5851 | 0.8587 | 0.8260 | N/A | no |
| A2C7E2 | CH602_PROM3 | No assigned EC number | 0.5600 | 0.8738 | 0.8226 | yes | no |
| Q9LJE4 | CPNB2_ARATH | No assigned EC number | 0.8662 | 0.9792 | 0.8724 | no | no |
| Q119S1 | CH601_TRIEI | No assigned EC number | 0.6098 | 0.8794 | 0.8324 | yes | no |
| P12834 | CH601_SYNP6 | No assigned EC number | 0.5723 | 0.8775 | 0.8566 | yes | no |
| Q747C7 | CH60_GEOSL | No assigned EC number | 0.5593 | 0.8738 | 0.8529 | yes | no |
| P22879 | CH60_SYNE7 | No assigned EC number | 0.5723 | 0.8775 | 0.8566 | yes | no |
| A7I0W5 | CH60_CAMHC | No assigned EC number | 0.5705 | 0.8681 | 0.8489 | yes | no |
| Q7MBB4 | CH602_GLOVI | No assigned EC number | 0.6190 | 0.8662 | 0.8318 | yes | no |
| Q2LTG7 | CH602_SYNAS | No assigned EC number | 0.5680 | 0.8738 | 0.8513 | yes | no |
| Q37757 | CH60_CYAPA | No assigned EC number | 0.5553 | 0.8775 | 0.8613 | N/A | no |
| Q67KB8 | CH60_SYMTH | No assigned EC number | 0.5574 | 0.8775 | 0.8629 | yes | no |
| B9LZ35 | CH60_GEOSF | No assigned EC number | 0.5595 | 0.8738 | 0.8451 | yes | no |
| Q3M6L5 | CH602_ANAVT | No assigned EC number | 0.6072 | 0.8719 | 0.8267 | yes | no |
| Q9AMJ8 | CH601_ANASL | No assigned EC number | 0.5702 | 0.8775 | 0.8581 | N/A | no |
| Q98IH9 | CH602_RHILO | No assigned EC number | 0.5470 | 0.8719 | 0.8542 | yes | no |
| Q2JXD4 | CH601_SYNJA | No assigned EC number | 0.6148 | 0.8775 | 0.8597 | yes | no |
| P0A338 | CH602_THEVL | No assigned EC number | 0.5940 | 0.8757 | 0.8563 | N/A | no |
| P0A337 | CH602_THEEB | No assigned EC number | 0.5940 | 0.8757 | 0.8563 | yes | no |
| O50323 | CH601_THEVL | No assigned EC number | 0.5595 | 0.8775 | 0.8550 | N/A | no |
| Q8R5X7 | CH60_FUSNN | No assigned EC number | 0.5595 | 0.8719 | 0.8589 | yes | no |
| Q7V643 | CH601_PROMM | No assigned EC number | 0.5622 | 0.8719 | 0.8180 | yes | no |
| P21241 | RUBB_BRANA | No assigned EC number | 0.8667 | 0.9830 | 0.8877 | N/A | no |
| P21240 | CPNB1_ARATH | No assigned EC number | 0.8705 | 0.9830 | 0.87 | yes | no |
| Q162U5 | CH602_ROSDO | No assigned EC number | 0.5623 | 0.8775 | 0.8519 | yes | no |
| Q43831 | RUBB_SECCE | No assigned EC number | 0.8936 | 0.7966 | 0.8476 | N/A | no |
| P08927 | RUBB_PEA | No assigned EC number | 0.8472 | 0.9642 | 0.8605 | N/A | no |
| C0Z361 | CPNB3_ARATH | No assigned EC number | 0.8644 | 0.9792 | 0.8710 | no | no |
| A4J8H4 | CH60_DESRM | No assigned EC number | 0.5690 | 0.8719 | 0.8542 | yes | no |
| B9L698 | CH60_NAUPA | No assigned EC number | 0.5656 | 0.8757 | 0.8532 | yes | no |
| B8D0Z4 | CH60_HALOH | No assigned EC number | 0.5638 | 0.8738 | 0.8482 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_LG_III2625 | hypothetical protein (607 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XIV.2088.1 | hypothetical protein (955 aa) | • | 0.563 | |||||||
 | estExt_Genewise1_v1.C_LG_III0383 | hypothetical protein (681 aa) | • | • | 0.526 | ||||||
 | estExt_fgenesh4_pm.C_LG_I0780 | hypothetical protein (97 aa) | • | • | 0.524 | ||||||
 | estExt_Genewise1_v1.C_LG_VIII0130 | hypothetical protein (97 aa) | • | • | 0.519 | ||||||
 | estExt_fgenesh4_pg.C_LG_X1007 | hypothetical protein (97 aa) | • | • | 0.495 | ||||||
 | estExt_Genewise1_v1.C_LG_XVIII0619 | hypothetical protein (258 aa) | • | • | • | • | 0.490 | ||||
 | estExt_fgenesh4_pm.C_LG_IX0449 | SubName- Full=Putative uncharacterized protein; (97 aa) | • | • | 0.480 | ||||||
 | estExt_Genewise1_v1.C_280199 | SubName- Full=Putative uncharacterized protein; (256 aa) | • | • | • | • | 0.480 | ||||
 | rps3 | RecName- Full=30S ribosomal protein S3, chloroplastic; (74 aa) | • | 0.433 | |||||||
 | grail3.3134000101 | Predicted protein (100 aa) | • | 0.429 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 531 | |||
| PLN03167 | 600 | PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr | 0.0 | |
| PRK00013 | 542 | PRK00013, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| cd03344 | 520 | cd03344, GroEL, GroEL_like type I chaperonin | 0.0 | |
| PRK12849 | 542 | PRK12849, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| TIGR02348 | 524 | TIGR02348, GroEL, chaperonin GroL | 0.0 | |
| PTZ00114 | 555 | PTZ00114, PTZ00114, Heat shock protein 60; Provisi | 0.0 | |
| CHL00093 | 529 | CHL00093, groEL, chaperonin GroEL | 0.0 | |
| PRK12850 | 544 | PRK12850, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| PRK12851 | 541 | PRK12851, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| PRK12852 | 545 | PRK12852, groEL, chaperonin GroEL; Reviewed | 1e-179 | |
| PRK14104 | 546 | PRK14104, PRK14104, chaperonin GroEL; Provisional | 1e-150 | |
| COG0459 | 524 | COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po | 1e-139 | |
| cd00309 | 464 | cd00309, chaperonin_type_I_II, chaperonin families | 1e-107 | |
| pfam00118 | 481 | pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami | 8e-92 | |
| cd03333 | 209 | cd03333, chaperonin_like, chaperonin_like superfam | 2e-30 | |
| TIGR02343 | 532 | TIGR02343, chap_CCT_epsi, T-complex protein 1, eps | 1e-14 | |
| cd03339 | 526 | cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty | 7e-13 | |
| TIGR02339 | 519 | TIGR02339, thermosome_arch, thermosome, various su | 4e-12 | |
| cd03343 | 517 | cd03343, cpn60, cpn60 chaperonin family | 4e-12 | |
| TIGR02345 | 523 | TIGR02345, chap_CCT_eta, T-complex protein 1, eta | 9e-12 | |
| cd03338 | 515 | cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type | 3e-11 | |
| TIGR02342 | 517 | TIGR02342, chap_CCT_delta, T-complex protein 1, de | 2e-10 | |
| TIGR02347 | 531 | TIGR02347, chap_CCT_zeta, T-complex protein 1, zet | 3e-10 | |
| cd03340 | 522 | cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I | 1e-09 | |
| cd03336 | 517 | cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type | 1e-09 | |
| PTZ00212 | 533 | PTZ00212, PTZ00212, T-complex protein 1 subunit be | 1e-09 | |
| TIGR02341 | 518 | TIGR02341, chap_CCT_beta, T-complex protein 1, bet | 2e-09 | |
| cd03342 | 484 | cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type | 3e-09 | |
| TIGR02340 | 536 | TIGR02340, chap_CCT_alpha, T-complex protein 1, al | 1e-06 | |
| TIGR02346 | 531 | TIGR02346, chap_CCT_theta, T-complex protein 1, th | 2e-06 | |
| cd03341 | 472 | cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type | 2e-05 | |
| cd03337 | 480 | cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type | 2e-05 | |
| cd03335 | 527 | cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type | 2e-05 | |
| TIGR02344 | 525 | TIGR02344, chap_CCT_gamma, T-complex protein 1, ga | 3e-05 |
| >gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Score = 918 bits (2374), Expect = 0.0
Identities = 477/531 (89%), Positives = 504/531 (94%), Gaps = 7/531 (1%)
Query: 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKI 60
MASTFTA SS+ S+ APNG S N+LSS ASISSSSFGRRQSV LRR+R+PK+
Sbjct: 1 MASTFTATSSVGSLAAPNGH-------KSDNRLSSFASISSSSFGRRQSVRLRRSRSPKV 53
Query: 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAK 120
AAK+LHFNKDG A+KKLQ GVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAK
Sbjct: 54 KAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 113
Query: 121 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPV ITR
Sbjct: 114 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITR 173
Query: 181 GIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
GIEKT+KALV ELK+MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE
Sbjct: 174 GIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 233
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
GKSAEN LYVVEGMQFDRGYISPYFVTDSEKM+VEY+NCKLLLVDKKITNARDLI +LED
Sbjct: 234 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILED 293
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
AIRG YP+LIIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGGT
Sbjct: 294 AIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGT 353
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VIR+EVGL+LDKVGKEVLG A+KVVLTKDTTTIVGDGSTQ+AV+KRVAQI+ LIE AEQD
Sbjct: 354 VIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQD 413
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
YE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
Sbjct: 414 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 473
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LRL+SKVDAIK+TL+NDE+KVGADIVKRAL YPLKLIAKNAGVNGSVVSEK
Sbjct: 474 LRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 524
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Length = 600 |
| >gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 701 bits (1812), Expect = 0.0
Identities = 292/471 (61%), Positives = 360/471 (76%), Gaps = 5/471 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AKD+ F +D A +KL GVNKLAD V VTLGPKGRNVVLE +GAP I DGVTVAKE
Sbjct: 1 MAKDIKFGED--ARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RG
Sbjct: 59 IELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K +A V ELK++SK VED E+A VA +SA + E+G +IAEAM KVG++GV+T+EE
Sbjct: 119 IDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEE 178
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K E L VVEGMQFDRGY+SPYFVTD EKM E EN +L+ DKKI+N +DL+ VLE
Sbjct: 179 SKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ 238
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+LIIAED+E EALATLVVNKLRG LK+ A+KAPGFG+R+ L+DIAILTGGT
Sbjct: 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGT 298
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +E+GL L+ E LG A KVV+TKD TTIV ++A+ RVAQI+ IE D
Sbjct: 299 VISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSD 358
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEGIV GGG L
Sbjct: 359 YDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVAL 418
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LR + ++A+K N +E G +IV RAL PL+ IA+NAG+ GSVV EK
Sbjct: 419 LRAAPALEALK--GLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEK 467
|
Length = 542 |
| >gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Score = 692 bits (1789), Expect = 0.0
Identities = 293/469 (62%), Positives = 364/469 (77%), Gaps = 5/469 (1%)
Query: 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVE 123
KD+ F ++ A K L GVNKLAD V VTLGPKGRNVV+E +G+PKI DGVTVAKE+E
Sbjct: 1 KDIKFGEE--ARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIE 58
Query: 124 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE 183
LEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLA+ +I EG+K VAAGANP+ + RGIE
Sbjct: 59 LEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIE 118
Query: 184 KTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGK 242
K +A+V ELK++SK V+ E+A VA +SA + E+G +IAEAM KVG+ GV+T+EEGK
Sbjct: 119 KAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGK 178
Query: 243 SAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302
+ E L VVEGMQFDRGY+SPYFVTD EKM VE EN +LL DKKI++ ++L+ +LE
Sbjct: 179 TLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238
Query: 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVI 362
+ P+LIIAED+E EALATLVVNKLRG LK+ A+KAPGFG+R+ L+DIAILTGGTVI
Sbjct: 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVI 298
Query: 363 RDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422
+E+GL L+ V E LG A KVV+TKD TTI+G + A+ R+AQIR IE DY+
Sbjct: 299 SEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYD 358
Query: 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR 482
+EKL ER+AKLSGGVAVI+VG TE ELKEKK RVEDALNAT+AAVEEGIV GGG LLR
Sbjct: 359 KEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLR 418
Query: 483 LSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
S +D +K N +EK+G +IV+RAL PL+ IA+NAGV+GSVV EK
Sbjct: 419 ASPALDKLKA--LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEK 465
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520 |
| >gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 659 bits (1703), Expect = 0.0
Identities = 275/471 (58%), Positives = 358/471 (76%), Gaps = 5/471 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AK + F+++ A + L+ GVNKLAD V VTLGPKGRNVV++ +GAP I DGV++AKE
Sbjct: 1 MAKIIKFDEE--ARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ L+ EG+K VAAGANP+ + RG
Sbjct: 59 IELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K +A+V ELK +++ V S E+A VA +SA + E+G +IAEAM KVG+ GV+T+EE
Sbjct: 119 IDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEE 178
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K+ E L V EGMQFDRGY+SPYFVTD E+M E+ +LL DKKI++ +DL+ +LE
Sbjct: 179 SKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK 238
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+LIIAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+ L+DIAILTGGT
Sbjct: 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGT 298
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +++GL L++V + LG A +V +TKD TTIV ++A+ RVAQIR IE D
Sbjct: 299 VISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSD 358
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VGA TE ELKE+K RVEDALNAT+AAVEEGIV GGG L
Sbjct: 359 YDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVAL 418
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LR + +D + N ++ G +IV+RAL PL+ IA+NAG++GSVV K
Sbjct: 419 LRAAKALDELAGL--NGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAK 467
|
Length = 542 |
| >gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL | Back alignment and domain information |
|---|
Score = 637 bits (1645), Expect = 0.0
Identities = 288/470 (61%), Positives = 366/470 (77%), Gaps = 5/470 (1%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + F+++ A K L GV+KLAD V VTLGPKGRNVVLE +GAP I DGVTVAKE+
Sbjct: 1 AKQIKFDEE--ARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEI 58
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELED EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGI
Sbjct: 59 ELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGI 118
Query: 183 EKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EK +A+V ELK++SK V+ E+A VA +SA N+ E+G++IAEAM KVG+ GV+T+EE
Sbjct: 119 EKAVEAVVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEES 178
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS E L VVEGMQFDRGYISPYFVTD+EKM VE EN +L+ DKKI+N +DL+ +LE
Sbjct: 179 KSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKV 238
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
+ P+LIIAED+E EALATLVVNKLRG L + A+KAPGFG+R+ L+DIAILTGG V
Sbjct: 239 AQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQV 298
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I +E+GL L++V + LG A KV + KD TTIV + A+ RVAQI+ IE DY
Sbjct: 299 ISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDY 358
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+REKL ER+AKL+GGVAVI+VGA TETE+KEKKLR+EDALNAT+AAVEEGIV GGG LL
Sbjct: 359 DREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRIEDALNATRAAVEEGIVPGGGVALL 418
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
R ++ ++ +K D ++E +G DIVKRAL PL+ IA+NAG++G+VV+EK
Sbjct: 419 RAAAALEGLKG--DGEDEAIGIDIVKRALEAPLRQIAENAGLDGAVVAEK 466
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524 |
| >gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Score = 576 bits (1487), Expect = 0.0
Identities = 246/481 (51%), Positives = 339/481 (70%), Gaps = 5/481 (1%)
Query: 54 RARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVN 113
+ + K++ F + A + L G+ +LAD V VTLGPKGRNV++E +YG+PKI
Sbjct: 5 MFSSRYRFKGKEIRFGDE--ARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITK 62
Query: 114 DGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGA 173
DGVTVAK +E D EN+GA+L+RQ A+KTND AGDGTTT+ +LA+ + EG K VAAG
Sbjct: 63 DGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGL 122
Query: 174 NPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGR 232
NP+ + RGI+ K ++ LK+ S+ V+ E + +VA +SA + E+G++IA+AM KVG+
Sbjct: 123 NPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGK 182
Query: 233 KGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNAR 292
G +T+E+GK+ E+ L VVEGM FDRGYISPYFVT+ + VE EN +L+ DKKI++ +
Sbjct: 183 DGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQ 242
Query: 293 DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDD 352
++ +LE A++ P+LIIAED+E EAL TL++NKLRG LK+ A+KAPGFG+ + L D
Sbjct: 243 SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQD 302
Query: 353 IAILTGGTVI-RDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIR 411
IA+LTG TV+ D VGL LD +LG+A KV +TKD T I+ G + + +RV +R
Sbjct: 303 IAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLR 362
Query: 412 TLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 471
+ IE +Y++EKL ER+AKLSGGVAVI+VG +E E+ EKK R+EDALNAT+AAVEEG
Sbjct: 363 SQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG 422
Query: 472 IVVGGGCTLLRLSSKVDAIKETLDND-EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530
IV GGG LLR S +D ++E + +++ G IV+ AL P K IA+NAGV G+VV E
Sbjct: 423 IVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVE 482
Query: 531 K 531
K
Sbjct: 483 K 483
|
Length = 555 |
| >gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL | Back alignment and domain information |
|---|
Score = 567 bits (1463), Expect = 0.0
Identities = 264/460 (57%), Positives = 359/460 (78%), Gaps = 3/460 (0%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
A + L+ G++ LA+ V VTLGPKGRNVVLE KYG+P+IVNDGVT+AKE+ELED +EN G
Sbjct: 11 ARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGV 70
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
L+RQAA+KTND+AGDGTTT+ VLA ++ +G+K VAAGANP+ + RGIEK ++ +VS++
Sbjct: 71 ALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQI 130
Query: 194 KQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVE 252
+ ++ VED + + VA++SAGN+ EVG+MIA+A+ KVGR+GV++LEEGKS L + E
Sbjct: 131 AEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITE 190
Query: 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNAR-DLINVLEDAIRGAYPILII 311
GM+F++G+ISPYFVTD+E+M V EN +LL DKKIT + DL+ +LE + P+LII
Sbjct: 191 GMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLII 250
Query: 312 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALD 371
AED+E+EALATLV+NKLRG + + A++APGFG+R+ L+DIAILTGG VI ++ GL+L+
Sbjct: 251 AEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLE 310
Query: 372 KVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIA 431
+ ++LG A ++++TKD+TTI+ DG ++ V R Q+R IE A+ YE+EKL ER+A
Sbjct: 311 TIQLDLLGQARRIIVTKDSTTIIADG-NEEQVKARCEQLRKQIEIADSSYEKEKLQERLA 369
Query: 432 KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIK 491
KLSGGVAVI+VGA TETE+K+KKLR+EDA+NATKAAVEEGIV GGG TL+ LS +
Sbjct: 370 KLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWA 429
Query: 492 ETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
+ ++E +GA IV RA+ PLK IA+NAG NGSV+ EK
Sbjct: 430 KNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEK 469
|
Length = 529 |
| >gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 567 bits (1464), Expect = 0.0
Identities = 269/471 (57%), Positives = 349/471 (74%), Gaps = 5/471 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++ F+ D A +L GVN LA+ V VTLGPKGRNVVLE +GAP+I DGVTVAKE
Sbjct: 2 AAKEIRFSTD--ARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A+KTNDLAGDGTTT+ VLAQ ++ EG K+VAAG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ A+V ELK+++K+V S E+A VA +SA + +G MIAEAM KVG++GV+T+EE
Sbjct: 120 IDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K+ L VVEGMQFDRGY+SPYFVT+ EKM E E+ +LL +KKI+N +DL+ +LE
Sbjct: 180 AKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P+LIIAED+E EALATLVVNKLRG LK A+KAPGFG+R+ L+DIA+LTGG
Sbjct: 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +++G+ L+ V ++LG A +V++TK+ TTI+ + + RV QIR IE D
Sbjct: 300 VISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VG TE E+KEKK RV+DAL+AT+AAVEEGIV GGG L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LR S + +K N +E G DIV+RAL PL+ IA NAG GSVV K
Sbjct: 420 LRARSALRGLKG--ANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGK 468
|
Length = 544 |
| >gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 555 bits (1433), Expect = 0.0
Identities = 271/471 (57%), Positives = 357/471 (75%), Gaps = 5/471 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++ F+ + A +K+ GVN LAD V VTLGPKGRNVV++ +GAP I NDGVT+AKE
Sbjct: 2 AAKEVKFHVE--AREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ ++ EG K VAAGANP+ + RG
Sbjct: 60 IELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I++ A+V ELK ++ V ++E+A VA +SA + E+G ++AEAM KVG +GV+T+EE
Sbjct: 120 IDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K+AE L VVEGMQFDRGY+SPYFVTD++KM E E+ +L+ +KKI+N +DL+ VLE
Sbjct: 180 SKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P+LIIAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+ L+DIAILTGGT
Sbjct: 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGT 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +++G+ L+ V E LG A KVV+ K+ TTI+ ++ + RVAQIR IE D
Sbjct: 300 VISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AAVEEGIV GGG L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LR +D K N +++ G +IV+RAL P++ IA+NAG GSVV K
Sbjct: 420 LRAVKALD--KLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGK 468
|
Length = 541 |
| >gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 515 bits (1327), Expect = e-179
Identities = 258/471 (54%), Positives = 346/471 (73%), Gaps = 5/471 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F+ D A ++ GV+ LA+ V VTLGPKGRNVV+E +GAP+I DGVTVAKE
Sbjct: 2 AAKDVKFSGD--ARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++VR+ A+KTNDLAGDGTTT+ VLAQ ++ EG K VAAG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ A+V ++++ +K V S E+A V +SA + +G MIA+AM KVG +GV+T+EE
Sbjct: 120 IDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
KS E + +VEGM+FDRGY+SPYFVT++EKM VE ++ +LL +KK++ + ++ VLE
Sbjct: 180 NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P+LIIAED+E EALATLVVN+LRG LK+AA+KAPGFG+R+ L+DIAILTGG
Sbjct: 240 VVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
+I +++G+ L+ V ++LG A KVV+ K+ TTIV + + RV QI+ IE D
Sbjct: 300 LISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VG TE E+KEKK RVEDALNAT+AAV+EGIV GGG L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LR V I DN + + G +IV +AL P++ IA+NAGV GS+V K
Sbjct: 420 LRAKKAVGRI--NNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGK 468
|
Length = 545 |
| >gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Score = 440 bits (1132), Expect = e-150
Identities = 251/471 (53%), Positives = 348/471 (73%), Gaps = 5/471 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
+AK++ F D A ++ GV+ LA+ V VTLGPKGRNVVL+ +GAP+I DGVTVAKE
Sbjct: 2 SAKEVKFGVD--ARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++VR+ A+K+ D AGDGTTT+ VLAQ ++ EG K VAAG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ +A+V++L + SK+V + E+A V +SA + E+G +A+AM KVG +GV+T+EE
Sbjct: 120 IDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
KS E L VVEGMQFDRGYISPYFVT+++KM VE ++ +L+ +KK+++ +L+ +LE
Sbjct: 180 AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEA 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
++ P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
I +++G+ L+ V ++LG A KV++ K+ TTIV + + RVAQI+ IE D
Sbjct: 300 AISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VG TE E+KE+K RV+DA++AT+AAVEEGIV GGG L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
LR S ++ IK ND++K G +IV++AL P + IA NAG +GSV+ K
Sbjct: 420 LRASEQLKGIKT--KNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGK 468
|
Length = 546 |
| >gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 412 bits (1061), Expect = e-139
Identities = 205/482 (42%), Positives = 278/482 (57%), Gaps = 40/482 (8%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
K+ F +D A + LAD V TLGPKGRN +L G I NDGVT+ KE
Sbjct: 2 MGKERKFGED--ARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELE + GAKL+ + A K +D AGDGTTT+VVLA L+ E K++AAG +P +I RG
Sbjct: 60 IELE----HPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRG 115
Query: 182 IEKTSKALVSELKQMSKEVEDSELAD------VAAVSAGNNYEVGNMIAEAMSKVGRK-- 233
+ V ELK+++K V DSE VA+ SA ++ E+G ++ EA+ KVG++
Sbjct: 116 YRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQS 175
Query: 234 ---GVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITN 290
G++ ++E +E L VVEGM FD+GY+SPYF+ D EN K+LL+DKK+
Sbjct: 176 DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEI 230
Query: 291 ARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL 350
+ + LE I P+LIIAED E EALATLVVN LRG + +KAPG + YL
Sbjct: 231 KKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYL 289
Query: 351 DDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQI 410
+DIAILTG V ++++G L K LG A V + KD TTIV G +
Sbjct: 290 EDIAILTGRRVKKEDLGERLAK-----LGGAKIVSVLKDLTTIV-LGEGA------AGLV 337
Query: 411 RTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470
DY+ EKL ER AK +GGVA I V TE EL EK+ R+EDALN +AAVEE
Sbjct: 338 EETKTG---DYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEE 393
Query: 471 G-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVS 529
G IV GGG + + ++ T++ +E++G + RAL P + +A+NAG++ V
Sbjct: 394 GKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVL 453
Query: 530 EK 531
K
Sbjct: 454 SK 455
|
Length = 524 |
| >gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = e-107
Identities = 150/477 (31%), Positives = 216/477 (45%), Gaps = 104/477 (21%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
A N LAD V TLGPKG + +L G P I NDG T+ KE+E VE+ A
Sbjct: 9 ARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIE----VEHPAA 64
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
KL+ + A +D GDGTTT VVLA L+ E K++AAG +P I RG EK + + L
Sbjct: 65 KLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEIL 124
Query: 194 KQMSKEVEDS---ELADVAAVSAG------NNYEVGNMIAEAMSKVGR------KGVVTL 238
K+++ ++ EL VA S + +G ++ +A+ KVG+ GV+ +
Sbjct: 125 KEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRV 184
Query: 239 EEGKSAENM-LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINV 297
E+ K +V GM FD+GY+SPY M EN K+LL+D K+
Sbjct: 185 EKKKGGSLEDSELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLEY------- 230
Query: 298 LEDAIRGAYPILIIAED-IEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAIL 356
++IAE I+ EAL L L I A++ + + L+ IA
Sbjct: 231 -----------VVIAEKGIDDEALHYLAK------LGIMAVRR-----VRKEDLERIAKA 268
Query: 357 TGGTVIRDEVGLALDKVGKEVLGNASKVVLTK----DTTTIVGDGSTQDAVSKRVAQIRT 412
TG T++ L+ + E LG A V TK T I G
Sbjct: 269 TGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCK--------------- 308
Query: 413 LIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE-G 471
G VA I + TE EL E + + DAL A +AAVE+ G
Sbjct: 309 ---------------------GGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGG 347
Query: 472 IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528
IV GGG + LS ++ + +TL +E++G + AL + +A+NAG++ V
Sbjct: 348 IVPGGGAAEIELSKALEELAKTL-PGKEQLGIEAFADALEVIPRTLAENAGLDPIEV 403
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464 |
| >gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 288 bits (740), Expect = 8e-92
Identities = 143/480 (29%), Positives = 222/480 (46%), Gaps = 98/480 (20%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
LAD V TLGPKGRN +L + G I NDG T+ KE+E++ P AKL+ +AA +
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPA----AKLLVEAAKSQD 56
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-- 202
+ GDGTTT+VVLA L+ E K++ AG +P I RG E + + L+++S V D
Sbjct: 57 EEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD 116
Query: 203 SELADVAAVSAG------NNYEVGNMIAEAMS------KVGRKGVVTLEEGKSAENMLYV 250
+L +VA S + +G ++ +A+ VG GV+ +E G ++ +
Sbjct: 117 EDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGSLEDS--EL 174
Query: 251 VEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNARDLINV 297
+EG+ D+GY+SP M EN K+LL+D + L+
Sbjct: 175 IEGIVLDKGYLSP-------DMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERLLEA 227
Query: 298 LEDAIRGA--------YPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349
E + ++II + I+ AL L N + ++ K +
Sbjct: 228 EEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRV-----------KKED 276
Query: 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQ 409
L+ +A TG TV+ LD + + LG+A KV +G+ T
Sbjct: 277 LERLAKATGATVVSS-----LDDLEPDELGSAGKV-----EEREIGEDKT---------- 316
Query: 410 IRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE 469
T IE LSG VA I + T+ EL E + +EDALNA KAA++
Sbjct: 317 --TFIEG---------------CLSGKVATILLRGATDHELDELERAIEDALNAVKAALK 359
Query: 470 -EGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528
EG+V GGG L LS + +++ + +E++G + AL + +A+NAG++ V
Sbjct: 360 DEGVVPGGGAAELELSRALREYAKSV-SGKEQLGIEAFAEALEVIPRTLAENAGLDPIEV 418
|
This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 |
| >gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-30
Identities = 73/282 (25%), Positives = 104/282 (36%), Gaps = 86/282 (30%)
Query: 202 DSELADVAAVSAG-----NNYEVGNMIAEAMSKVGR------KGVVTLEEGKSAENM-LY 249
L VA S + +G ++ +A+ KVG GV+ +E+
Sbjct: 1 RELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSE 60
Query: 250 VVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPIL 309
+V G+ FD+GY SPY M EN K+LL+D + +
Sbjct: 61 LVVGVVFDKGYASPY-------MPKRLENAKILLLDCPLEY------------------V 95
Query: 310 IIAED-IEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGL 368
+IAE I+ AL L I A++ K + L+ IA TG T++
Sbjct: 96 VIAEKGIDDLALHYLAK------AGIMAVRR-----VKKEDLERIARATGATIVSS---- 140
Query: 369 ALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428
L+ + E LG A V TK + T IE +
Sbjct: 141 -LEDLTPEDLGTAELVEETKIGEEKL-----------------TFIEGCK---------- 172
Query: 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470
G A I + TE EL E K + DAL A +AAVEE
Sbjct: 173 -----GGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209 |
| >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 16/151 (10%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A ++ +LGPKG + +L S G + NDG T+ ++++++P+ AKL+ + + +
Sbjct: 39 VASILRTSLGPKGMDKMLISPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQD 94
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
D GDGTT VVLA L+ + +++ G +P+ I G E+ ++ V L+++S E+
Sbjct: 95 DEIGDGTTGVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVEHLEEISDEISADN 154
Query: 205 LADVAAVSAGNNYEVGNMIAEAMSKVGRKGV 235
NN E +I A + +G K V
Sbjct: 155 ----------NNRE--PLIQAAKTSLGSKIV 173
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 |
| >gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 7e-13
Identities = 45/151 (29%), Positives = 83/151 (54%), Gaps = 16/151 (10%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+++ +LGP+G + +L S G + NDG T+ ++++++ + AKL+ + + +
Sbjct: 35 VANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQD 90
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
D GDGTT VVLA L+ + K++ G +P+ I G E+ K V L++++ ++E S
Sbjct: 91 DEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP 150
Query: 205 LADVAAVSAGNNYEVGNMIAEAMSKVGRKGV 235
+N E +I AM+ +G K V
Sbjct: 151 ----------DNKE--PLIQTAMTSLGSKIV 169
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526 |
| >gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 100/427 (23%), Positives = 181/427 (42%), Gaps = 61/427 (14%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+ V TLGP+G + +L G I NDG T+ KE+++E P AK++ + A +
Sbjct: 28 VAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQD 83
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK--EVED 202
+ GDGTTT+VVLA L+ + ++ +P +I G K ++ + + +++ ED
Sbjct: 84 EEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGYRKAAEKALEIIDEIATKISPED 143
Query: 203 SE-LADVA-------AVSAGNNYEVGNMIAEAMSKV-----GRKGVVTLEE--------G 241
+ L VA A + ++ N++ EA+ +V K V L+ G
Sbjct: 144 RDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQVAELRGDGKYYVDLDNIKIVKKTGG 203
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
+ L VEG+ D+ + P M EN K+ L+D + + I+
Sbjct: 204 SIDDTEL--VEGIVVDKEVVHP-------GMPKRVENAKIALLDAPLEVEKTEIDA---E 251
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
IR P I ++EA+ +V+K+ A + G + YL IL V
Sbjct: 252 IRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQHYLAKAGILAVRRV 311
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
+ ++ G ++ + + T D V +R +
Sbjct: 312 KKSDIEKLARATGARIVSS------IDEITE--SDLGYAGLVEER------------KVG 351
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTL 480
E + + K V ++ G TE + E + ++DAL+ +A+E+G +V GGG
Sbjct: 352 EDKMVFVEGCKNPKAVTILLRGG-TEHVVDELERSLQDALHVVASALEDGKVVAGGGAVE 410
Query: 481 LRLSSKV 487
+ ++ ++
Sbjct: 411 IEIALRL 417
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519 |
| >gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+ V TLGPKG + +L G I NDG T+ KE+++E P AK++ + A +
Sbjct: 27 VAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQD 82
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE 201
+ GDGTTT+VVLA L+ + ++ +P +I G ++ + L +++ +V+
Sbjct: 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVD 139
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517 |
| >gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 9e-12
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
N +A+ + TLGP+G + ++ G + NDG T+ K +++ P AK +
Sbjct: 25 NACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDGATILKLLDIVHPA----AKTLVDI 80
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A + GDGTT+ V+LA L+ E + G +P LI RG + + ++K+++
Sbjct: 81 AKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRGYREALSLAIEKIKEIAVT 140
Query: 200 VEDSE 204
++ +
Sbjct: 141 IDSEK 145
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523 |
| >gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 9/132 (6%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD + +LGP+G + ++++ G I NDG T+ K++ + P + +L +K
Sbjct: 20 VADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVEL-----SKAQ 74
Query: 145 DL-AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-- 201
D+ AGDGTT+ VVLA L++ ++ G +P +I+ + +K V L MS V+
Sbjct: 75 DIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLN 134
Query: 202 -DSELADVAAVS 212
L A S
Sbjct: 135 DRESLIKSATTS 146
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515 |
| >gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD + +LGPKG + +++ G I NDG T+ K++ + P AK++ + + +
Sbjct: 21 VADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVLHPA----AKMLVELSKAQD 76
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
AGDGTT+ V+LA L+ +++ G +P +I+ + + + L +MS V+ S+
Sbjct: 77 IEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEAIKILDEMSIPVDLSD 136
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 |
| >gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
N L D++ LGPKG +L S G K+ DG + E++++ P A ++ +A
Sbjct: 23 NAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARA 78
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A +++ GDGTT++V+L L+ + + + G +P +IT G E K L+ L + +
Sbjct: 79 ATAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDKFKVK 138
Query: 200 VEDS 203
ED
Sbjct: 139 TEDE 142
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
N +AD V TLGP+G + ++ G I NDG T+ K +++ P AK +
Sbjct: 23 NACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDI 78
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A + GDGTT+ VVLA + E + G +P +I RG K + + ++K+++
Sbjct: 79 AKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVN 138
Query: 200 VE 201
++
Sbjct: 139 ID 140
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522 |
| >gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 85 LADLVGVTLGPKGRNVVLES--KYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142
+ DLV TLGPKG + +L+S + G + NDG T+ K + +++P AK++ +
Sbjct: 25 IGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKV 80
Query: 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED 202
+D GDGTT+ VLA L+ E K+VA +P I G + A L + +
Sbjct: 81 QDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSS 140
Query: 203 SELA 206
E A
Sbjct: 141 DEEA 144
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517 |
| >gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 75 MKKLQN--GVNKLADLVGVTLGPKGRNVVLES-----KYGAPKIVNDGVTVAKEVELEDP 127
+LQ+ G +ADLV TLGPKG + +L+ + G + NDG T+ K V L++P
Sbjct: 22 TARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNP 81
Query: 128 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
AK++ + ++ GDGTT+ VVLA L+ E K++ +P I G
Sbjct: 82 A----AKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEG 131
|
Length = 533 |
| >gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 81 GVNKLADLVGVTLGPKGRNVVLES-KYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
G + DLV TLGPKG + +L+S + NDG T+ K + ++N AK++
Sbjct: 22 GAIAVGDLVKSTLGPKGMDKILQSASSNTIMVTNDGATILKSI----GLDNPAAKVLVNI 77
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
+ +D GDGTT+ VLA L+ E K++ +P I G +KA + L + + +
Sbjct: 78 SKVQDDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYRLATKAALDALTKSAVD 137
Query: 200 VEDSE 204
+
Sbjct: 138 NSSDK 142
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518 |
| >gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
+ L D++ LGPKG +L S G K+ DG + E++++ P ++ A+ A
Sbjct: 19 SAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIAR----A 74
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A +D+ GDGTT++V+L L+ + + + G +P +IT G E + L+
Sbjct: 75 ATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVP 134
Query: 200 VE 201
VE
Sbjct: 135 VE 136
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484 |
| >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 84 KLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143
+A++V +LGP G + +L G I NDG T+ K +E+E P AK++ + A
Sbjct: 23 AVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQLQ 78
Query: 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE 201
+ GDGTT+ V++A L+ ++V +P I G K V +K+ +S V+
Sbjct: 79 DREVGDGTTSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEAVKYIKENLSVSVD 137
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 |
| >gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Query: 70 KDGYA-MKKLQNGVNK-------LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
K+GY M L+ V K L+ + +LGP G N ++ + + ND T+ +E
Sbjct: 7 KEGYRHMSGLEEAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRE 66
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+E++ P AKL+ A+ + GDGT +VLA L+ + +++ G +P I +G
Sbjct: 67 LEVQHPA----AKLLVMASEMQENEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKG 122
Query: 182 IEKTSKALVSELKQMSK-EVED 202
E K + L+++ E+ED
Sbjct: 123 YEMALKKAMEVLEELVVWEIED 144
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
+L+ + + GP G N ++ + + +D T+ +E+E++ P AKL+ A
Sbjct: 15 EACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMA 70
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMS-K 198
+ + GDGT VVLA L+ + +++ G +P I G EK K + L+++
Sbjct: 71 SQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVY 130
Query: 199 EVEDSELADVAAVSA-----------GNNYEVGNMIAEAMSKV 230
++ED L + VS GN + ++AEA V
Sbjct: 131 KIED--LRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISV 171
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472 |
| >gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD++ LGP+ +L G + NDG + +E+++ P AK + + + +
Sbjct: 28 VADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHP----AAKSMIELSRTQD 83
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
+ GDGTT+ ++LA ++A + G +P +I + K + + L+++S V+ ++
Sbjct: 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVND 143
Query: 205 LADVAAV 211
A + +
Sbjct: 144 RAQMLKI 150
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480 |
| >gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 82 VNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141
+A++V +LGP G + +L G I NDG T+ K +E+E P AK++ + A
Sbjct: 17 AMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQ 72
Query: 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ GDGTT+ V++A L+ ++V +P I G
Sbjct: 73 LQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISG 112
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527 |
| >gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 31/127 (24%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD++ TLGP+ +L G + NDG + +E+++ P AK + + + +
Sbjct: 28 VADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHP----AAKSMIELSRTQD 83
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
+ GDGTT+ ++LA +++ + +P +I R +K +S L+++S V+ ++
Sbjct: 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND 143
Query: 205 LADVAAV 211
A + +
Sbjct: 144 DAAMLKL 150
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| PLN03167 | 600 | Chaperonin-60 beta subunit; Provisional | 100.0 | |
| PRK12849 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12852 | 545 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK00013 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| TIGR02348 | 524 | GroEL chaperonin GroL. This family consists of Gro | 100.0 | |
| PRK12850 | 544 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PTZ00114 | 555 | Heat shock protein 60; Provisional | 100.0 | |
| cd03344 | 520 | GroEL GroEL_like type I chaperonin. Chaperonins ar | 100.0 | |
| PRK12851 | 541 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| CHL00093 | 529 | groEL chaperonin GroEL | 100.0 | |
| PRK14104 | 546 | chaperonin GroEL; Provisional | 100.0 | |
| KOG0356 | 550 | consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ | 100.0 | |
| TIGR02339 | 519 | thermosome_arch thermosome, various subunits, arch | 100.0 | |
| cd03343 | 517 | cpn60 cpn60 chaperonin family. Chaperonins are inv | 100.0 | |
| cd03342 | 484 | TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| cd03335 | 527 | TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02347 | 531 | chap_CCT_zeta T-complex protein 1, zeta subunit. M | 100.0 | |
| cd03339 | 526 | TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha | 100.0 | |
| TIGR02340 | 536 | chap_CCT_alpha T-complex protein 1, alpha subunit. | 100.0 | |
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 100.0 | |
| cd03338 | 515 | TCP1_delta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02343 | 532 | chap_CCT_epsi T-complex protein 1, epsilon subunit | 100.0 | |
| cd03340 | 522 | TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero | 100.0 | |
| TIGR02344 | 525 | chap_CCT_gamma T-complex protein 1, gamma subunit. | 100.0 | |
| TIGR02342 | 517 | chap_CCT_delta T-complex protein 1, delta subunit. | 100.0 | |
| cd03336 | 517 | TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| TIGR02345 | 522 | chap_CCT_eta T-complex protein 1, eta subunit. Mem | 100.0 | |
| PTZ00212 | 533 | T-complex protein 1 subunit beta; Provisional | 100.0 | |
| cd03337 | 480 | TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02346 | 531 | chap_CCT_theta T-complex protein 1, theta subunit. | 100.0 | |
| TIGR02341 | 519 | chap_CCT_beta T-complex protein 1, beta subunit. M | 100.0 | |
| cd03341 | 472 | TCP1_theta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| cd00309 | 464 | chaperonin_type_I_II chaperonin families, type I a | 100.0 | |
| KOG0361 | 543 | consensus Chaperonin complex component, TCP-1 eta | 100.0 | |
| PF00118 | 485 | Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon | 100.0 | |
| KOG0358 | 534 | consensus Chaperonin complex component, TCP-1 delt | 100.0 | |
| KOG0363 | 527 | consensus Chaperonin complex component, TCP-1 beta | 100.0 | |
| KOG0362 | 537 | consensus Chaperonin complex component, TCP-1 thet | 100.0 | |
| KOG0360 | 545 | consensus Chaperonin complex component, TCP-1 alph | 100.0 | |
| KOG0364 | 527 | consensus Chaperonin complex component, TCP-1 gamm | 100.0 | |
| KOG0359 | 520 | consensus Chaperonin complex component, TCP-1 zeta | 100.0 | |
| KOG0357 | 400 | consensus Chaperonin complex component, TCP-1 epsi | 100.0 | |
| cd03333 | 209 | chaperonin_like chaperonin_like superfamily. Chape | 99.96 | |
| cd03334 | 261 | Fab1_TCP TCP-1 like domain of the eukaryotic phosp | 99.95 | |
| KOG0230 | 1598 | consensus Phosphatidylinositol-4-phosphate 5-kinas | 99.17 | |
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 97.36 |
| >PLN03167 Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-107 Score=892.79 Aligned_cols=524 Identities=91% Similarity=1.231 Sum_probs=497.8
Q ss_pred CcccccccccccccccCCCcccchhcccccccccccccccccccccccchhcccccccccccccccccCCcHHHHHHHHH
Q 009601 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKIYAAKDLHFNKDGYAMKKLQN 80 (531)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~a~~~~~~ 80 (531)
|||++.+.++.++..++... ++.+.++|+..++..+|+++++.+.|++..++..|+|++.||.+.++|+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ar~~l~~ 73 (600)
T PLN03167 1 MASTFTATSSVGSLAAPNGH-------KSDNRLSSFASISSSSFGRRQSVRLRRSRSPKVKAAKELHFNKDGSAIKKLQA 73 (600)
T ss_pred CcchhhhhhhhcCccccccc-------ccccccccccccccccccccccccccccCCchhhhcceeecCCcHHHHHHHHH
Confidence 88998888888888877544 55678888999999999766666666666677777999999932289999999
Q ss_pred HHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCccchHHHHHHH
Q 009601 81 GVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 160 (531)
Q Consensus 81 ~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGTTtvvvLa~~ 160 (531)
|++.|+++|+|||||+||||||++++|+|+|||||+||+|+|+++||++|+||+|++++|++||+++||||||++||+++
T Consensus 74 g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~ 153 (600)
T PLN03167 74 GVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 153 (600)
T ss_pred HHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCchhhHHhhhhccCChhhHhHHHHHHHHhhccCCceEeec
Q 009601 161 LIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240 (531)
Q Consensus 161 LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~~~~l~~li~~A~~~v~~~g~I~v~~ 240 (531)
||+++.+++++|+||..|++||++|.+.+++.|+++++++++.+|.++|++|+++++.|++|+++|+.+++++|.|.+++
T Consensus 154 LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~ 233 (600)
T PLN03167 154 LIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 233 (600)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEecc
Confidence 99999999999999999999999999999999999999997558999999999999999999999999999999999999
Q ss_pred CCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHHhcCCCEEEEeccchHHHH
Q 009601 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEAL 320 (531)
Q Consensus 241 G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al 320 (531)
|++++|++++++|++|+++|.+|||++++++|+++++||+|+++|++|++++++.++++.+.+.|+|+||++++|++++|
T Consensus 234 g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL 313 (600)
T PLN03167 234 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEAL 313 (600)
T ss_pred CCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHH
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCCh
Q 009601 321 ATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQ 400 (531)
Q Consensus 321 ~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~ 400 (531)
++|+.|+++|..+|+|||+|+||+.++++|+|||++|||++++++.+++++++++++||+|++|++.+++|+++++.+++
T Consensus 314 ~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~ 393 (600)
T PLN03167 314 ATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQ 393 (600)
T ss_pred HHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeeccCchhH
Q 009601 401 DAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480 (531)
Q Consensus 401 ~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~gvVpGGGa~e 480 (531)
+.+++|+.+++.+++++.++|++++|++|+++|++++++|+|||+|+.+++|+||+++||++++|+++++|+|||||++|
T Consensus 394 ~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~e 473 (600)
T PLN03167 394 EAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 473 (600)
T ss_pred HHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccC
Q 009601 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (531)
Q Consensus 481 l~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~k 531 (531)
|+++.+|++++...++.+|..++++|++||+.||++||+|||+|+.+|+.+
T Consensus 474 l~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~ 524 (600)
T PLN03167 474 LRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEK 524 (600)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHH
Confidence 999999999987888999988899999999999999999999999998753
|
|
| >PRK12849 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-101 Score=844.39 Aligned_cols=465 Identities=59% Similarity=0.897 Sum_probs=451.8
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
|+|.|.|| ++++..|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||.+|+||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~ 78 (542)
T PRK12849 1 MAKIIKFD--EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVAS 78 (542)
T ss_pred CCccccch--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHH
Confidence 47899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHh
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 220 (531)
+||+++||||||+|+|+++||+++.+++++|+||..|++||++|++.++++|+++++++++. +|.++|+||++++++++
T Consensus 79 ~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~ 158 (542)
T PRK12849 79 KTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHH
Q 009601 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (531)
Q Consensus 221 ~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (531)
+++++|+..++++|.+.++.|++++|++++++|++|+++|.+|||.++.++|++.++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~ 238 (542)
T PRK12849 159 ELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK 238 (542)
T ss_pred HHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHH
Confidence 99999999999888888889999998669999999999999999999988999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCce
Q 009601 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (531)
Q Consensus 301 i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~ 380 (531)
+.+.|+||||++++|+++++++|..|+++|.++|+|||.|+|+++++++|+|||.+|||++++++.+++++++++++||+
T Consensus 239 i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK12849 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009601 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (531)
Q Consensus 381 ~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Da 460 (531)
|+.|+++++++++++++++++.+..|+++|+++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DA 398 (542)
T PRK12849 319 AKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDA 398 (542)
T ss_pred eeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 461 l~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+|++++++++|||||||++|+++|.+|++++ +.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 399 l~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vi~ 466 (542)
T PRK12849 399 LNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQA-AGVEIVRRALEAPLRQIAENAGLDGSVVVA 466 (542)
T ss_pred HHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999999988 7778777 899999999999999999999999998875
|
|
| >PRK12852 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-101 Score=842.31 Aligned_cols=466 Identities=55% Similarity=0.858 Sum_probs=450.3
Q ss_pred ccccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHH
Q 009601 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAA 140 (531)
Q Consensus 61 ~~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a 140 (531)
||+|.|.|| +++|+.+++|+..|+++|+|||||+||||||+++.|+++|||||+||||+|+++||++|+||+|++++|
T Consensus 1 ~~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a 78 (545)
T PRK12852 1 MAAKDVKFS--GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVA 78 (545)
T ss_pred CCcchhhcc--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHH
Confidence 358999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhH
Q 009601 141 AKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEV 219 (531)
Q Consensus 141 ~~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l 219 (531)
++||+++||||||+|+||++||+++.+++++|+||..|++||++|++.+++.|+++++++++. ++.++|++|+++++.+
T Consensus 79 ~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l 158 (545)
T PRK12852 79 SKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAI 158 (545)
T ss_pred hhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876 8999999999889999
Q ss_pred hHHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHH
Q 009601 220 GNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299 (531)
Q Consensus 220 ~~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le 299 (531)
++++++|+.+++++|.|.+..|+++.+.+++++|++|+++|.+|||++++++|+.+++||+|+++|++|+++++++++++
T Consensus 159 ~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~ 238 (545)
T PRK12852 159 GKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLE 238 (545)
T ss_pred HHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHH
Confidence 99999999999999999998899875555999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCc
Q 009601 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLG 379 (531)
Q Consensus 300 ~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG 379 (531)
.+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++||
T Consensus 239 ~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG 318 (545)
T PRK12852 239 AVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLG 318 (545)
T ss_pred HHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred eeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHH
Q 009601 380 NASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 459 (531)
Q Consensus 380 ~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~D 459 (531)
+|+.|+++++++++++++++++.+.+|+++|+.+++++.+.|++++|+||+++|+++++||+|||+|+.+++|++|+++|
T Consensus 319 ~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~D 398 (545)
T PRK12852 319 RAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVED 398 (545)
T ss_pred CCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 460 ALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 460 al~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
|+|++++++++|||||||++|++++.+|.+++.. ++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 399 Al~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~q-~~i~~~a~AL~~ip~~La~NaG~d~~~vl~ 467 (545)
T PRK12852 399 ALNATRAAVQEGIVPGGGVALLRAKKAVGRINND-NADVQ-AGINIVLKALEAPIRQIAENAGVEGSIVVG 467 (545)
T ss_pred HHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999999999999998866 56655 999999999999999999999999998875
|
|
| >PRK00013 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-101 Score=838.84 Aligned_cols=465 Identities=62% Similarity=0.913 Sum_probs=447.0
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
|+|.+.|| ++++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||||+|+++||++|+||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~ 78 (542)
T PRK00013 1 MAKDIKFG--EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVAS 78 (542)
T ss_pred CCchhhch--HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 36899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHh
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 220 (531)
+||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls 158 (542)
T PRK00013 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHH
Q 009601 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (531)
Q Consensus 221 ~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (531)
+++++|+..++++|.|.++.+....+.+++++|++|+++|.+|||.+++++++++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~ 238 (542)
T PRK00013 159 KLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ 238 (542)
T ss_pred HHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHH
Confidence 99999999999888887765544444449999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCce
Q 009601 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (531)
Q Consensus 301 i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~ 380 (531)
+.+.|+||||++++|+++++++|..|+++|+++|++||+|+||+.++++|+|||++|||++++++.|++++++++++||+
T Consensus 239 i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK00013 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009601 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (531)
Q Consensus 381 ~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Da 460 (531)
|+.|+++++++++|+++++++.+..|+++|+.+++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Da 398 (542)
T PRK00013 319 AKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDA 398 (542)
T ss_pred eeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 461 l~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+|++|+++++|+|||||++|++++.+|+++ .+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 399 l~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vl~ 466 (542)
T PRK00013 399 LHATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEA-TGINIVLRALEAPLRQIAENAGLEGSVVVE 466 (542)
T ss_pred HHHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999988 66777776 899999999999999999999999998875
|
|
| >TIGR02348 GroEL chaperonin GroL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-100 Score=836.65 Aligned_cols=463 Identities=62% Similarity=0.909 Sum_probs=448.6
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhc
Q 009601 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (531)
Q Consensus 64 k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 143 (531)
|.+.|+ +++++.|++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~--~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 79 (524)
T TIGR02348 2 KQIKFD--EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKT 79 (524)
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHcc
Confidence 679999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHhHH
Q 009601 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNM 222 (531)
Q Consensus 144 d~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~l 222 (531)
|+++||||||+|+|+++||+++.+++++|+||..|++||++|++.++++|+++++++++. +|.++|++|.+++++++++
T Consensus 80 d~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 159 (524)
T TIGR02348 80 NDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSL 159 (524)
T ss_pred CceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999866 8999999999999999999
Q ss_pred HHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHH
Q 009601 223 IAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302 (531)
Q Consensus 223 i~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~ 302 (531)
+++|+..++++|.|.++.|++.+|.+++++|++|+++|.+|||.++++++++.++||+|+++|++|+++++++++++.+.
T Consensus 160 v~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~ 239 (524)
T TIGR02348 160 IAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVA 239 (524)
T ss_pred HHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHH
Confidence 99999999998988888898887766999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceee
Q 009601 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNAS 382 (531)
Q Consensus 303 ~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~ 382 (531)
+.|+||||++++|+++++++|..|+++|+++|++||+|+||+.++++|+|||++|||++++++.|++++++++++||+|+
T Consensus 240 ~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 319 (524)
T TIGR02348 240 QSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAK 319 (524)
T ss_pred HhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred EEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Q 009601 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALN 462 (531)
Q Consensus 383 ~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~ 462 (531)
.|++.++++++++++++++.+..|+++++++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+|
T Consensus 320 ~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~ 399 (524)
T TIGR02348 320 KVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALN 399 (524)
T ss_pred EEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 463 ATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 463 a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++|+++++|||||||++||+++.+|++ ..+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 400 ~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~v~~ 465 (524)
T TIGR02348 400 ATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEA-IGIDIVKRALEAPLRQIAENAGKDGAVVAE 465 (524)
T ss_pred HHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999998 666677666 899999999999999999999999998875
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118. |
| >PRK12850 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-100 Score=837.72 Aligned_cols=466 Identities=57% Similarity=0.869 Sum_probs=448.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHH
Q 009601 61 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAA 140 (531)
Q Consensus 61 ~~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a 140 (531)
||+|.++|+ +++++.+++|+..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||++|+||+|++++|
T Consensus 1 ~~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a 78 (544)
T PRK12850 1 MAAKEIRFS--TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVA 78 (544)
T ss_pred CCcceeccc--HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHH
Confidence 358999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhH
Q 009601 141 AKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEV 219 (531)
Q Consensus 141 ~~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l 219 (531)
++||+++||||||+|+|+++||+++.+++++|+||..|++||++|++.++++|+++++++++. +|.++|++|+++++.+
T Consensus 79 ~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l 158 (544)
T PRK12850 79 SKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESI 158 (544)
T ss_pred hhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999866 8999999999999999
Q ss_pred hHHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHH
Q 009601 220 GNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLE 299 (531)
Q Consensus 220 ~~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le 299 (531)
++++++|+..++++|.|.++.+....+++++++|++|+++|.+|||+++.++++.+++||+|+++|+++++.++++++++
T Consensus 159 ~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~ 238 (544)
T PRK12850 159 GEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILE 238 (544)
T ss_pred HHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHH
Confidence 99999999999988888876666566666999999999999999999988899999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCc
Q 009601 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLG 379 (531)
Q Consensus 300 ~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG 379 (531)
++.+.|+||||++++|+++++++|..|+++|.++++|||+|+||++++++|+|||++|||++++++.+++++++++++||
T Consensus 239 ~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG 318 (544)
T PRK12850 239 AVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLG 318 (544)
T ss_pred HHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred eeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHH
Q 009601 380 NASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 459 (531)
Q Consensus 380 ~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~D 459 (531)
+|++|++.+++++++++|++++.+..|+++++++++++.++|++++|+||++||+|+++||+|||+|+.+++|++|+++|
T Consensus 319 ~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~D 398 (544)
T PRK12850 319 RAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDD 398 (544)
T ss_pred CCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 460 ALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 460 al~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
|++++++++++|||||||++|++++..|+++ .+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 399 Al~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~v~~ 467 (544)
T PRK12850 399 ALHATRAAVEEGIVPGGGVALLRARSALRGL-KGANADET-AGIDIVRRALEEPLRQIATNAGFEGSVVVG 467 (544)
T ss_pred HHHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 9999999999999999999999999999988 56667666 899999999999999999999999998875
|
|
| >PTZ00114 Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-100 Score=839.10 Aligned_cols=465 Identities=53% Similarity=0.847 Sum_probs=449.6
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
++++.|+ ++++..|++||..|+++|+|||||+||||||++++|+|+|||||+||+|+|+++||++|+||+|++++|++
T Consensus 14 ~~~~~~~--~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~ 91 (555)
T PTZ00114 14 GKEIRFG--DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASK 91 (555)
T ss_pred hhhhhhH--HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHh
Confidence 6778888 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHhH
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~ 221 (531)
||+++||||||+||||++||+++.+++++|+||..|++||++|.+.++++|+++++++++. +|.++|+||+++++++++
T Consensus 92 qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~ 171 (555)
T PTZ00114 92 TNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGS 171 (555)
T ss_pred hccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999766 899999999998999999
Q ss_pred HHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHH
Q 009601 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (531)
Q Consensus 222 li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i 301 (531)
++++|+..++++|.|.+++|++++|++++++|++|+++|.+|||++++++|+.+++||+|+++|++|+++++++++++++
T Consensus 172 li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i 251 (555)
T PTZ00114 172 LIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHA 251 (555)
T ss_pred HHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecC-CCccccCCCCCCCce
Q 009601 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDE-VGLALDKVGKEVLGN 380 (531)
Q Consensus 302 ~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~-~~~~l~~~~~~~lG~ 380 (531)
.+.|+||||++++|+++++++|..|+++|.++|+|||.|++|++++++|+|||++|||+++++. .+..++++++++||+
T Consensus 252 ~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~ 331 (555)
T PTZ00114 252 VKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGS 331 (555)
T ss_pred HHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986 677778899999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009601 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (531)
Q Consensus 381 ~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Da 460 (531)
|++|+++++++++++++++++.|+.|+++++.++++..++|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 332 a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Da 411 (555)
T PTZ00114 332 AKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDA 411 (555)
T ss_pred CceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCeeccCchhHhHHHHHHHHHhc--cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE--TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 461 l~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~--~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+|++++++++|||||||++|+++|..|++++. +.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 412 l~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~ 482 (555)
T PTZ00114 412 LNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQR-TGVKIVRNALRLPTKQIAENAGVEGAVVVE 482 (555)
T ss_pred HHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999998875 4667766 899999999999999999999999998875
|
|
| >cd03344 GroEL GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-100 Score=828.27 Aligned_cols=463 Identities=63% Similarity=0.933 Sum_probs=449.1
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhc
Q 009601 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (531)
Q Consensus 64 k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 143 (531)
|.+.|| .+++..|++|+..|+++|+|||||+||+|||++++|+++|||||+||+|+|+++||++|+||+|++++|++|
T Consensus 1 ~~~~~g--~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~q 78 (520)
T cd03344 1 KDIKFG--EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 78 (520)
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhh
Confidence 467888 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHhHH
Q 009601 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNM 222 (531)
Q Consensus 144 d~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~l 222 (531)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++++++. +|.++|+|+++++++++++
T Consensus 79 d~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~l 158 (520)
T cd03344 79 NDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGEL 158 (520)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999866 8999999999999999999
Q ss_pred HHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHH
Q 009601 223 IAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302 (531)
Q Consensus 223 i~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~ 302 (531)
+++|+..++++|.|.+++|++++|++++++|++|+++|.+|+|.+++++|+++++||+|+++|+++++++++.++++.+.
T Consensus 159 v~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~ 238 (520)
T cd03344 159 IAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238 (520)
T ss_pred HHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999988888889999999966999999999999999999998889999999999999999999999999999999
Q ss_pred hcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceee
Q 009601 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNAS 382 (531)
Q Consensus 303 ~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~ 382 (531)
+.|+||||++++|+++++++|..|+++|.+++++||.|++|++++++|+|||.+|||++++++.+++++++++++||+|+
T Consensus 239 ~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~ 318 (520)
T cd03344 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAK 318 (520)
T ss_pred hhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Q 009601 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALN 462 (531)
Q Consensus 383 ~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~ 462 (531)
+|++++++++++++|++++.++.|+++++.+++++.++|++++|+||+++|+|++|||+|||+|+.+++|++|+++||+|
T Consensus 319 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~ 398 (520)
T cd03344 319 KVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALN 398 (520)
T ss_pred EEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 463 ATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 463 a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++++++++|+|||||++||+++++|++++. .++.+| +++++|++||+.||++|++|||+|+.+++.
T Consensus 399 ~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~~~~~a~Al~~ip~~La~NaG~d~~~vi~ 464 (520)
T cd03344 399 ATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGDEK-LGIEIVRRALEAPLRQIAENAGVDGSVVVE 464 (520)
T ss_pred HHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999999999999999999987 777766 899999999999999999999999998875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. |
| >PRK12851 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-100 Score=831.58 Aligned_cols=465 Identities=58% Similarity=0.881 Sum_probs=446.2
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
|+|.+.|+ +++++.+++|+..|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~ 79 (541)
T PRK12851 2 AAKEVKFH--VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVAS 79 (541)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 57999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHh
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 220 (531)
+||+++||||||+|+|+++||+++.+++++|+||..|++||++|++.++++|+++++++++. ++.++|++++++++.++
T Consensus 80 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~ 159 (541)
T PRK12851 80 KTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIG 159 (541)
T ss_pred hhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHH
Q 009601 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (531)
Q Consensus 221 ~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (531)
+++++|+..++++|.|.++.+....+++++++|++|+++|.+|||++++++|+++++||+|+++|+++++.+++.++++.
T Consensus 160 ~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~ 239 (541)
T PRK12851 160 RLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239 (541)
T ss_pred HHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHH
Confidence 99999999999888777755444444459999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCce
Q 009601 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (531)
Q Consensus 301 i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~ 380 (531)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~ 319 (541)
T PRK12851 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR 319 (541)
T ss_pred HHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009601 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (531)
Q Consensus 381 ~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Da 460 (531)
|+.|++.+++|+++++|++++.+.+|+++++++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DA 399 (541)
T PRK12851 320 AKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDA 399 (541)
T ss_pred ccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 461 l~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++++++++++|||||||++|+++|.+|++++.. ++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 400 l~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~vl~ 467 (541)
T PRK12851 400 LHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGDQR-TGVEIVRRALEAPVRQIAENAGAEGSVVVG 467 (541)
T ss_pred HHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999999999999999999998865 66666 899999999999999999999999998875
|
|
| >CHL00093 groEL chaperonin GroEL | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-100 Score=830.90 Aligned_cols=465 Identities=57% Similarity=0.883 Sum_probs=446.6
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
|+|.+.|+ +++|+.+++||..|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||++++|++|++++|.
T Consensus 1 ~~~~~~~~--~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~ 78 (529)
T CHL00093 1 MSKKILYQ--DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAAS 78 (529)
T ss_pred CCceeecC--HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHH
Confidence 37899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHh
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 220 (531)
+|++++||||||+|||+++||+++.+++++|+||..|++||++|.+.+++.|+++++++++. +|.+||++|+++++.|+
T Consensus 79 ~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~ 158 (529)
T CHL00093 79 KTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVG 158 (529)
T ss_pred hcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCH-HHHHHHHH
Q 009601 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA-RDLINVLE 299 (531)
Q Consensus 221 ~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~-~~l~~~le 299 (531)
+|+++|+.+++++|.|.++.|+..++.+++++|++|+++|.+|||++++++|+.+++||+|+++|++|+.. .+++++++
T Consensus 159 ~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~ 238 (529)
T CHL00093 159 SMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILE 238 (529)
T ss_pred HHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHH
Confidence 99999999999989888877776666669999999999999999999999999999999999999999987 78999999
Q ss_pred HHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCc
Q 009601 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLG 379 (531)
Q Consensus 300 ~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG 379 (531)
.+.+.|.|++|++++|+++++++|+.|+.+|+++|+||+.|++|++++++|+|||++|||++++++.|++++++++++||
T Consensus 239 ~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG 318 (529)
T CHL00093 239 QVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLG 318 (529)
T ss_pred HHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred eeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHH
Q 009601 380 NASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 459 (531)
Q Consensus 380 ~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~D 459 (531)
+|++|++.++++++++ .++++.+..|+++++++++.+.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++|
T Consensus 319 ~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~D 397 (529)
T CHL00093 319 QARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLED 397 (529)
T ss_pred cceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHH
Confidence 9999999999999998 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCeeccCchhHhHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 460 ALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE-TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 460 al~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~-~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
|++++|+++++|+|||||++||++|.+|++++. +.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 398 Al~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~ 468 (529)
T CHL00093 398 AINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDEL-IGALIVARAILAPLKRIAENAGKNGSVIIE 468 (529)
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999999999999999999999876 6777776 899999999999999999999999998764
|
|
| >PRK14104 chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-99 Score=825.07 Aligned_cols=464 Identities=54% Similarity=0.848 Sum_probs=447.3
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
+|.+.|| .++++.|++|+..++++|+|||||+||||||+++.|+|+|||||+||+|+|++++|++|+||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~ 80 (546)
T PRK14104 3 AKEVKFG--VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (546)
T ss_pred cceecch--HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHh
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHhH
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~ 221 (531)
||+++||||||+||||++||+++.+++++|+||..|++||++|.+.+++.|+++++++++. ++.++|++|.++++.+++
T Consensus 81 qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~ 160 (546)
T PRK14104 81 SADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGK 160 (546)
T ss_pred hcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999866 799999999999999999
Q ss_pred HHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHH
Q 009601 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (531)
Q Consensus 222 li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i 301 (531)
++++|+..++++|.|.++.+++++|++++++|++|+++|.+|||+++++.++.++++|+|+++|.+++++++++++++.+
T Consensus 161 lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i 240 (546)
T PRK14104 161 FLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240 (546)
T ss_pred HHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHH
Confidence 99999999999999999888888766699999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCcee
Q 009601 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (531)
Q Consensus 302 ~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~ 381 (531)
.+.|+||||++++|+++|+++|..|+++|.++|+|||+|+||+.++++|+|||++|||++++++.+++++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a 320 (546)
T PRK14104 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRA 320 (546)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred eEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Q 009601 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (531)
Q Consensus 382 ~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal 461 (531)
+++++++++++++++|++++.+.+|+++|+.+++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal 400 (546)
T PRK14104 321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAM 400 (546)
T ss_pred eEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 462 ~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
|++++++++|||||||++|++++..|+++. ...+.+ ++++++|++||+.||++||+|||+|+.+++.
T Consensus 401 ~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~-~~~~~~-~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~ 467 (546)
T PRK14104 401 HATRAAVEEGIVPGGGVALLRASEQLKGIK-TKNDDQ-KTGVEIVRKALSAPARQIAINAGEDGSVIVG 467 (546)
T ss_pred HHHHHHHHcCcCcCchHHHHHHHHHHHHhh-cCChHH-HHHHHHHHHHHHhhHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999874 344444 4999999999999999999999999998875
|
|
| >KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-94 Score=745.19 Aligned_cols=467 Identities=56% Similarity=0.838 Sum_probs=457.2
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
.+|+|+|| .++|..+++|++.|+++|.+|+||+|||++|.+.+|.|+|||||.|+++++++.++++|+||+|+++++.
T Consensus 15 ~ak~i~fg--~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~ 92 (550)
T KOG0356|consen 15 YAKDIKFG--KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVAN 92 (550)
T ss_pred cccccccC--HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHh
Confidence 38999999 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHh
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 220 (531)
++++.+||||||+++|++++..++..-+.+|.+|.+|++|+..+++.+.+.|++++++|+.. ++.+||++|+++|.+++
T Consensus 93 ~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig 172 (550)
T KOG0356|consen 93 NTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIG 172 (550)
T ss_pred hccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 99999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHH
Q 009601 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (531)
Q Consensus 221 ~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (531)
+++.+|+.+++++|+|+++.|.+++|++++++||.||+||++|||+++++.+.++|++|++++.+.+|++++++.|.+|.
T Consensus 173 ~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~ 252 (550)
T KOG0356|consen 173 NLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALEL 252 (550)
T ss_pred HHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCC-ccccCCCCCCCc
Q 009601 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG-LALDKVGKEVLG 379 (531)
Q Consensus 301 i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~-~~l~~~~~~~lG 379 (531)
..+...||+|++++|+.++|.+|+.|++++.++++|||+|+||+.++..+.||+.+||++++.++.+ ++++..++++||
T Consensus 253 A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG 332 (550)
T KOG0356|consen 253 ALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLG 332 (550)
T ss_pred hhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 789999999999
Q ss_pred eeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHH
Q 009601 380 NASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 459 (531)
Q Consensus 380 ~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~D 459 (531)
.|.++.+++++++++.+.++++.++.||+|++..++.+.++|++++++||+++|+|++++|.+||.|+.|++|++.+++|
T Consensus 333 ~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~d 412 (550)
T KOG0356|consen 333 EVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVED 412 (550)
T ss_pred cceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccC
Q 009601 460 ALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (531)
Q Consensus 460 al~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~k 531 (531)
|||++++|+++|+|||||+++++|+..|.++.. .++.+|+.|++++.+||..|..+|++|||.|+..+++|
T Consensus 413 alnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~K 483 (550)
T KOG0356|consen 413 ALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEK 483 (550)
T ss_pred HHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHH
Confidence 999999999999999999999999999998876 56778889999999999999999999999999988765
|
|
| >TIGR02339 thermosome_arch thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-81 Score=681.30 Aligned_cols=399 Identities=25% Similarity=0.395 Sum_probs=365.0
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhccc
Q 009601 66 LHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145 (531)
Q Consensus 66 i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~ 145 (531)
...| .++++.|++||..|+++++|||||+||+|||+++.|+++|||||+||||+|+++||+ |+|++++|++||+
T Consensus 11 ~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd~ 84 (519)
T TIGR02339 11 RTKG--RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDA 84 (519)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHHH
Confidence 4444 789999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc--h-hhHHhhhhccCCh------
Q 009601 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAGNN------ 216 (531)
Q Consensus 146 ~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~~~------ 216 (531)
++||||||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|++++++++. . .|.++|+|+++++
T Consensus 85 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~ 164 (519)
T TIGR02339 85 EVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVT 164 (519)
T ss_pred HhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchh
Confidence 999999999999999999999999999999999999999999999999999999865 3 7999999998754
Q ss_pred -hhHhHHHHHHHHhhcc---CCc---------eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEee
Q 009601 217 -YEVGNMIAEAMSKVGR---KGV---------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLL 283 (531)
Q Consensus 217 -~~l~~li~~A~~~v~~---~g~---------I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll 283 (531)
++|++++++|+.++++ +|. |...+|++++|| ++++|++|+++|.+| +|+.+++||+|++
T Consensus 165 ~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~-------~m~~~i~n~kIll 236 (519)
T TIGR02339 165 KDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP-------GMPKRVKNAKIAL 236 (519)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC-------CCccccCCCcEEE
Confidence 8899999999999985 453 333799999999 999999999999987 3778899999999
Q ss_pred eccc-------------cCCHHHHHHHHH-----------HHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeec
Q 009601 284 VDKK-------------ITNARDLINVLE-----------DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (531)
Q Consensus 284 ~d~~-------------i~~~~~l~~~le-----------~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~ 339 (531)
++++ +++++++.++++ .+++.|+||||++++|+++++++|..+ ++++|+
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~- 309 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVR- 309 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEe-
Confidence 9998 677777766655 899999999999999999999999754 456665
Q ss_pred CCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHh
Q 009601 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (531)
Q Consensus 340 ~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~~ 416 (531)
++++++|+|||++|||++++ ++++++++.||+|++|++. ++++++|++|+++
T Consensus 310 ----~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~---------------- 364 (519)
T TIGR02339 310 ----RVKKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP---------------- 364 (519)
T ss_pred ----cCCHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC----------------
Confidence 56699999999999999998 5888888999999999865 4899999988653
Q ss_pred hhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCC
Q 009601 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (531)
Q Consensus 417 ~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~ 495 (531)
..+||+|||+|+.+++|.+|+++||++++++++++| ||||||++||++|..|++++.+.+
T Consensus 365 -------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~ 425 (519)
T TIGR02339 365 -------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIG 425 (519)
T ss_pred -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCC
Confidence 588999999999999999999999999999999999 999999999999999999988787
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 496 ~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+.+| +++++|++||+.||++|++|||+|+.+++.
T Consensus 426 ~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~ 459 (519)
T TIGR02339 426 GREQ-LAIEAFADALEEIPRILAENAGLDPIDALV 459 (519)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 8777 899999999999999999999999998875
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs. |
| >cd03343 cpn60 cpn60 chaperonin family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-80 Score=678.79 Aligned_cols=400 Identities=25% Similarity=0.386 Sum_probs=366.4
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcc
Q 009601 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (531)
Q Consensus 65 ~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 144 (531)
+..+| .++++.|++||..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||
T Consensus 9 ~~~~~--~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~ 82 (517)
T cd03343 9 QRTSG--RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 82 (517)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHH
Confidence 34555 789999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--ch-hhHHhhhhccCCh-----
Q 009601 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGNN----- 216 (531)
Q Consensus 145 ~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~~----- 216 (531)
+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|++++++++ +. .|.+||+||++++
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~ 162 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAA 162 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhH
Confidence 999999999999999999999999999999999999999999999999999999986 44 8999999999864
Q ss_pred -hhHhHHHHHHHHhhccCCc---------eEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009601 217 -YEVGNMIAEAMSKVGRKGV---------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (531)
Q Consensus 217 -~~l~~li~~A~~~v~~~g~---------I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~ 284 (531)
+.|++++++|+.++++++. |.+ .+|++++|| ++++|++|+++|.+|+ |+..++||+|+++
T Consensus 163 ~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~-------m~~~~~n~~Illl 234 (517)
T cd03343 163 KDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPG-------MPKRVENAKIALL 234 (517)
T ss_pred HHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCC-------CccccCCCcEEEE
Confidence 8999999999999987532 555 799999999 8999999999999987 4567899999999
Q ss_pred ccc-------------cCCHHHHHH-----------HHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecC
Q 009601 285 DKK-------------ITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (531)
Q Consensus 285 d~~-------------i~~~~~l~~-----------~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~ 340 (531)
+++ +++++++.+ +++.+++.|+||||++++|+++++++|.++ ++++|+
T Consensus 235 ~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~-- 306 (517)
T cd03343 235 DAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVR-- 306 (517)
T ss_pred eccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEE--
Confidence 998 477776655 455899999999999999999999999754 456776
Q ss_pred CcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009601 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (531)
Q Consensus 341 ~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~ 417 (531)
++++++|+|||++|||++++ ++++++++.||+|++|++. +++++++++|+++
T Consensus 307 ---~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~----------------- 361 (517)
T cd03343 307 ---RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP----------------- 361 (517)
T ss_pred ---eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-----------------
Confidence 56699999999999999998 5888999999999999864 7899999988763
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCC
Q 009601 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDN 496 (531)
Q Consensus 418 ~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~ 496 (531)
..+||+|||+|+.+++|++|+++||++++|+++++| ||||||++||+++..|++++.+.++
T Consensus 362 ------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~ 423 (517)
T cd03343 362 ------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGG 423 (517)
T ss_pred ------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999999999 9999999999999999998877878
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 497 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 497 ~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
.+| +++++|++||+.||++|++|||+|+.+++.
T Consensus 424 ~~~-~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~ 456 (517)
T cd03343 424 REQ-LAVEAFADALEEIPRTLAENAGLDPIDTLV 456 (517)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 777 899999999999999999999999998875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-81 Score=675.69 Aligned_cols=389 Identities=24% Similarity=0.381 Sum_probs=356.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+ ++|++++|++||+++||||
T Consensus 11 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~~~GDGT 86 (484)
T cd03342 11 GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDDITGDGT 86 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhhHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC---ch-hhHHhhhhccCCh------hhHhH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE---DS-ELADVAAVSAGNN------YEVGN 221 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~---~~-~l~~va~ts~~~~------~~l~~ 221 (531)
||++||+++||+++.+++++|+||..|++||++|.+.+++.|++++++++ +. .+.+||++|++++ +.|++
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~ 166 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTE 166 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 8999999999864 89999
Q ss_pred HHHHHHHhhccCC-c-------eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHH
Q 009601 222 MIAEAMSKVGRKG-V-------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD 293 (531)
Q Consensus 222 li~~A~~~v~~~g-~-------I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~ 293 (531)
++++|+..+++++ . |...+|+++.|+ ++++|++|+++|.+|+ |+++++||+|+++|++|+..+.
T Consensus 167 l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~-------m~~~~~n~~Ill~~~~le~~~~ 238 (484)
T cd03342 167 IVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPD-------MPKRVENAYILTCNVSLEYEKT 238 (484)
T ss_pred HHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCC-------CCccccCceEEEEeCCCCCCcc
Confidence 9999999998865 1 333589999999 9999999999999997 4677899999999999987654
Q ss_pred -HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccC
Q 009601 294 -LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDK 372 (531)
Q Consensus 294 -l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~ 372 (531)
+... .-.+||||+++|++.++++|..| +|+||+. +++++|+|||++|||++++ ++++
T Consensus 239 ~~~~~------~~~~lvi~~~~I~~~al~~l~~~------~I~av~~-----~~~~~l~~ia~~tGa~ii~-----~l~~ 296 (484)
T cd03342 239 EVNSG------FFYSVVINQKGIDPPSLDMLAKE------GILALRR-----AKRRNMERLTLACGGVAMN-----SVDD 296 (484)
T ss_pred ccCcE------EEEEEEEeCCCccHHHHHHHHHC------CCeEEEe-----CCHHHHHHHHHHhCCEEec-----cccc
Confidence 2211 12469999999999999999988 4788884 5689999999999999999 5889
Q ss_pred CCCCCCceeeEE---EEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHH
Q 009601 373 VGKEVLGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETE 449 (531)
Q Consensus 373 ~~~~~lG~~~~v---~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~ 449 (531)
+++++||+|++| ++++++++++++|+++ +++||+|||+|+.+
T Consensus 297 ~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~tI~lrg~t~~~ 341 (484)
T cd03342 297 LSPECLGYAGLVYERTLGEEKYTFIEGVKNP-----------------------------------KSCTILIKGPNDHT 341 (484)
T ss_pred CChhhCcccceEEEEEECCeEEEEEECCCCC-----------------------------------cEEEEEEeCCCHHH
Confidence 999999999999 5678899999988763 68999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 009601 450 LKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528 (531)
Q Consensus 450 l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 528 (531)
++|.||+++||++++++++++| +|||||++||+++.+|++++.+.++.+| +++++|++||+.||++|++|||+|+.++
T Consensus 342 l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~~ 420 (484)
T cd03342 342 ITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK-LGVQAFADALLVIPKTLAENSGLDVQET 420 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999 9999999999999999999887778777 8999999999999999999999999988
Q ss_pred cc
Q 009601 529 SE 530 (531)
Q Consensus 529 ~~ 530 (531)
+.
T Consensus 421 l~ 422 (484)
T cd03342 421 LV 422 (484)
T ss_pred HH
Confidence 75
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-80 Score=678.22 Aligned_cols=400 Identities=25% Similarity=0.345 Sum_probs=361.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.++++.|++||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 7 QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEVGDGT 82 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh-cccccC--ch-hhHHhhhhccC------ChhhHhH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE--DS-ELADVAAVSAG------NNYEVGN 221 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~-~s~~v~--~~-~l~~va~ts~~------~~~~l~~ 221 (531)
||+|||+++||+++.+++++|+||+.|++||++|.+.++++|++ ++++++ +. .|.++|+|+++ +.+.|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 899987 44 79999999976 2489999
Q ss_pred HHHHHHHhhcc---CCc---------eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC
Q 009601 222 MIAEAMSKVGR---KGV---------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (531)
Q Consensus 222 li~~A~~~v~~---~g~---------I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 289 (531)
++++|+..++. +|. |...+|++++|+ ++++|++|+++|.+| +|++.++||+|++++++|+
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le 234 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQ 234 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEeccCC
Confidence 99999999952 232 234689999999 999999999999887 4788899999999999875
Q ss_pred C-------------HHH-----------HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcc
Q 009601 290 N-------------ARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (531)
Q Consensus 290 ~-------------~~~-----------l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~ 345 (531)
. +.+ +.++++.+.+.|+||||++++|+++++++|..+ +|++++ ++
T Consensus 235 ~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v 303 (527)
T cd03335 235 KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RV 303 (527)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eC
Confidence 3 222 346788889999999999999999999999887 467666 66
Q ss_pred ccchHHHHHHHhCCeEEecCCCcc-ccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009601 346 KSQYLDDIAILTGGTVIRDEVGLA-LDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (531)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~~-l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~ 421 (531)
++++|+|||++|||+++++..+++ .+++++++||+|++|+ ++++++++|.+|++
T Consensus 304 ~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~---------------------- 361 (527)
T cd03335 304 KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK---------------------- 361 (527)
T ss_pred CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC----------------------
Confidence 789999999999999999654432 2455677899999998 67889999998875
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHH
Q 009601 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (531)
Q Consensus 422 e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (531)
+++|||+|||+|+.+++|.+|+++||++++++++++| +|||||++||+++.+|++++.+.++.+|
T Consensus 362 -------------~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~- 427 (527)
T cd03335 362 -------------RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 427 (527)
T ss_pred -------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH-
Confidence 4699999999999999999999999999999999999 9999999999999999999888878777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 501 ~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+++++|++||+.||++||+|||+|+.+++.
T Consensus 428 ~~i~~~a~aL~~ip~~La~NaG~d~~~~~~ 457 (527)
T cd03335 428 LAIAEFAEALLVIPKTLAVNAAKDATELVA 457 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 899999999999999999999999998865
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-80 Score=674.08 Aligned_cols=395 Identities=23% Similarity=0.371 Sum_probs=358.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~~~GDGT 90 (531)
T TIGR02347 15 DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDDITGDGT 90 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCcH
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhccccc---Cch-hhHHhhhhccCC------hhhHhH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV---EDS-ELADVAAVSAGN------NYEVGN 221 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v---~~~-~l~~va~ts~~~------~~~l~~ 221 (531)
||+|||+++||+++.+++++|+||+.|++||+.|++.++++|+++++++ .+. .|.++|+|++++ +++|++
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 170 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTE 170 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999765 334 799999999864 789999
Q ss_pred HHHHHHHhhccCCc------eE--eecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCH--
Q 009601 222 MIAEAMSKVGRKGV------VT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA-- 291 (531)
Q Consensus 222 li~~A~~~v~~~g~------I~--v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~-- 291 (531)
++++|+..+++++. |. ...|++.+|+ ++++|++|+++|.+|+ |+.+++||+|+++|++|+..
T Consensus 171 iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~le~~~~ 242 (531)
T TIGR02347 171 IVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVSLEYEKT 242 (531)
T ss_pred HHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCCCCCCcc
Confidence 99999999988653 33 2578999999 9999999999999997 46688999999999986432
Q ss_pred -----------HH-----------HHHHHHHHHhcCC-------C---EEEEeccchHHHHHHHHHHhhcccceEEEeec
Q 009601 292 -----------RD-----------LINVLEDAIRGAY-------P---ILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (531)
Q Consensus 292 -----------~~-----------l~~~le~i~~~g~-------~---lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~ 339 (531)
++ +...++++++.|. + +|+++++|++.++++|.++ +|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~- 315 (531)
T TIGR02347 243 EVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALR- 315 (531)
T ss_pred ccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEc-
Confidence 22 3445677777551 4 8999999999999999886 567776
Q ss_pred CCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEE---EEeCceEEEEcCCCChhhHHHHHHHHHHHHHh
Q 009601 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (531)
Q Consensus 340 ~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v---~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~ 416 (531)
++++++|+|||++|||++++ +++++++++||+|++| .++++++++|++|+++
T Consensus 316 ----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------------- 370 (531)
T TIGR02347 316 ----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP---------------- 370 (531)
T ss_pred ----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEcCCCC----------------
Confidence 45689999999999999998 6889999999999999 5778899999988763
Q ss_pred hhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCC
Q 009601 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (531)
Q Consensus 417 ~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~ 495 (531)
++|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.+.+
T Consensus 371 -------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~ 431 (531)
T TIGR02347 371 -------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVK 431 (531)
T ss_pred -------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCC
Confidence 589999999999999999999999999999999999 999999999999999999987788
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 496 ~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+.+| +++++|++||+.||++|++|||+|+.+++.
T Consensus 432 ~~~~-~~i~~fa~ALe~ip~~La~NaG~d~~~vl~ 465 (531)
T TIGR02347 432 GKAK-LGVEAFANALLVIPKTLAENSGLDAQDTLV 465 (531)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 8877 899999999999999999999999998875
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-79 Score=673.53 Aligned_cols=400 Identities=24% Similarity=0.348 Sum_probs=362.0
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcc
Q 009601 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (531)
Q Consensus 65 ~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 144 (531)
+..|+ .++++.|++||..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||
T Consensus 17 ~~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~ 90 (526)
T cd03339 17 KRLKG--LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQD 90 (526)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhh
Confidence 47777 899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc----h-hhHHhhhhccCC----
Q 009601 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED----S-ELADVAAVSAGN---- 215 (531)
Q Consensus 145 ~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~----~-~l~~va~ts~~~---- 215 (531)
+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++++. . .|.++|+|++++
T Consensus 91 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~ 170 (526)
T cd03339 91 DEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVS 170 (526)
T ss_pred hhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchh
Confidence 9999999999999999999999999999999999999999999999999999998862 3 799999998864
Q ss_pred --hhhHhHHHHHHHHhhccC-------Cc--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009601 216 --NYEVGNMIAEAMSKVGRK-------GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (531)
Q Consensus 216 --~~~l~~li~~A~~~v~~~-------g~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~ 284 (531)
.+.|++++++|+..+.+. .. |...+|++++|| ++++|++|+++|.+|+| +..++||||+++
T Consensus 171 ~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m-------~~~~~n~kI~ll 242 (526)
T cd03339 171 RCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM-------PKEVKDAKIAIL 242 (526)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCC-------CceecCCCEEEE
Confidence 478999999999988541 12 344699999999 99999999999999975 455678888888
Q ss_pred ccc-------------cCCHHH-----------HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecC
Q 009601 285 DKK-------------ITNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (531)
Q Consensus 285 d~~-------------i~~~~~-----------l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~ 340 (531)
+++ ++++++ +.++++.+++.|+||||++++|+++++++|.+|+ +.||+.+
T Consensus 243 ~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~v 316 (526)
T cd03339 243 TCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRWV 316 (526)
T ss_pred EecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEeC
Confidence 865 355555 5677999999999999999999999999998874 5678754
Q ss_pred CcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---e--CceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009601 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---T--KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (531)
Q Consensus 341 ~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~--~~~~~~~~g~~~~~~i~~ri~~l~~~l~ 415 (531)
++++|+|||++|||++++ ++++++++.||+|+.|+. + +++++++++|+++
T Consensus 317 -----~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~--------------- 371 (526)
T cd03339 317 -----GGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS--------------- 371 (526)
T ss_pred -----CHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC---------------
Confidence 478899999999999998 588999999999999973 3 4688999988763
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccC
Q 009601 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (531)
Q Consensus 416 ~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (531)
+.+||+|||+|+.+++|.||+++||++++++++++| +|||||++||+++..|++++.++
T Consensus 372 --------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~ 431 (526)
T cd03339 372 --------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKC 431 (526)
T ss_pred --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccC
Confidence 689999999999999999999999999999999999 99999999999999999998778
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++.+| +++++|++||+.||++|++|||+|+.+++.
T Consensus 432 ~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~ 466 (526)
T cd03339 432 SGIEQ-YAMRAFADALESIPLALAENSGLNPIETLS 466 (526)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 88776 899999999999999999999999998875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-79 Score=674.53 Aligned_cols=400 Identities=24% Similarity=0.340 Sum_probs=361.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.++++.|++||..|+++|+|||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 11 ~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 86 (536)
T TIGR02340 11 QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDREVGDGT 86 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhc-ccccC--ch-hhHHhhhhccC------ChhhHhH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQM-SKEVE--DS-ELADVAAVSAG------NNYEVGN 221 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~-s~~v~--~~-~l~~va~ts~~------~~~~l~~ 221 (531)
||+|||+++||+++.+++++|+||+.|++||+.|.+.++++|+++ +++++ +. .+.++|+|+++ +++.|++
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~ 166 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSN 166 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999974 88887 44 89999999987 5789999
Q ss_pred HHHHHHHhhc---cCCc-------e--EeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC
Q 009601 222 MIAEAMSKVG---RKGV-------V--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (531)
Q Consensus 222 li~~A~~~v~---~~g~-------I--~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 289 (531)
++++|+..++ .+|. | ...+|++++|+ ++++|++|+++|.+| +|+.+++||+|++++++|+
T Consensus 167 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 167 IVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEEecCCC
Confidence 9999999996 2342 2 23699999888 999999999999887 4788899999999999874
Q ss_pred CHH------------------------HHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcc
Q 009601 290 NAR------------------------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (531)
Q Consensus 290 ~~~------------------------~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~ 345 (531)
..+ .+.+.++.+++.|++|||++++|++.++++|.++ ++++++ ++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~------~I~~i~-----rv 307 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEA------GAMGVR-----RC 307 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEe-----cC
Confidence 332 1235678888999999999999999999999887 456666 56
Q ss_pred ccchHHHHHHHhCCeEEecCCCc-cccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009601 346 KSQYLDDIAILTGGTVIRDEVGL-ALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (531)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~-~l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~ 421 (531)
++++|+|||++|||+++++..++ ..+++++++||+|+.|+ ++++++++|++|+++
T Consensus 308 ~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--------------------- 366 (536)
T TIGR02340 308 KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR--------------------- 366 (536)
T ss_pred CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC---------------------
Confidence 68999999999999999975544 23456778899999999 788899999988763
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHH
Q 009601 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (531)
Q Consensus 422 e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (531)
.+|||+|||+|+.+++|++|+++||++++++++++| +|||||++||+++..|++++.+.++.+|
T Consensus 367 --------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~- 431 (536)
T TIGR02340 367 --------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 431 (536)
T ss_pred --------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH-
Confidence 589999999999999999999999999999999999 9999999999999999998777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 501 ~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+++++|++||+.||++|++|||+|+.+++.
T Consensus 432 ~~~~~fa~AL~~ip~~La~NaG~d~~~~l~ 461 (536)
T TIGR02340 432 LAIAEFAEALLIIPKVLAVNAALDSTELVA 461 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 899999999999999999999999998864
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-81 Score=678.19 Aligned_cols=438 Identities=46% Similarity=0.668 Sum_probs=393.3
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
++++..|+ .++|..|+.|++.|+++|++||||+||||||+++.|+|+|||||+||||+|+++||. |+|++++|.
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~ 75 (524)
T COG0459 2 MGKERKFG--EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAK 75 (524)
T ss_pred Cccccccc--HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHH
Confidence 47889999 999999999999999999999999999999999977999999999999999999997 999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch--hhHHhhhh-----ccC
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS--ELADVAAV-----SAG 214 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~--~l~~va~t-----s~~ 214 (531)
+||+++||||||+|||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++. +. +++.+ +++
T Consensus 76 ~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~-~~~~t~v~sk~~~ 154 (524)
T COG0459 76 KQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL-KIAITSVASKSAN 154 (524)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh-hhhhheeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999865 22 44444 445
Q ss_pred ChhhHhHHHHHHHHhhcc-----CCceEee-cCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecccc
Q 009601 215 NNYEVGNMIAEAMSKVGR-----KGVVTLE-EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI 288 (531)
Q Consensus 215 ~~~~l~~li~~A~~~v~~-----~g~I~v~-~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i 288 (531)
++++|++++++|+.+++. ++++.++ .|++.+|+ ++++||+||+||.+|||.++ +.++||+|+++|++|
T Consensus 155 ~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l 228 (524)
T COG0459 155 SDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKL 228 (524)
T ss_pred ChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCCCCc-----cccccceEEEEcccc
Confidence 568999999999999998 7776664 66666666 99999999999999997543 678999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCc
Q 009601 289 TNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGL 368 (531)
Q Consensus 289 ~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~ 368 (531)
+..++.++ ++...+.+.|+++++++++++++..++.|.+++.+++++|+.|+|+|.++++|+|++++|++++.+++.+
T Consensus 229 ~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~- 306 (524)
T COG0459 229 EIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG- 306 (524)
T ss_pred ccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-
Confidence 99999888 8888888889999999999999999999999999999999999999999999999999999999998654
Q ss_pred cccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhcCCeEEEEeCCCCH
Q 009601 369 ALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENA-EQDYEREKLNERIAKLSGGVAVIQVGAQTE 447 (531)
Q Consensus 369 ~l~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~-~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~ 447 (531)
+ ....+|.|+.+...++.+....|.+. +.++++. .++|+++++++|.++ .+++|||+|||+|+
T Consensus 307 --~--~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate 370 (524)
T COG0459 307 --E--RLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATE 370 (524)
T ss_pred --H--HHHHccCceEEeecccCceeecCccc-----------cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccH
Confidence 1 45678889999888777766665430 2334444 688999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 009601 448 TELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGS 526 (531)
Q Consensus 448 ~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~ 526 (531)
.+++|++|+++|||+++++++++| +|||||++|++++..|++++.+.++.+|++++++|++||+.||++|++|||+||.
T Consensus 371 ~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~ 450 (524)
T COG0459 371 VELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPI 450 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999 9999999999999999998544545345599999999999999999999999999
Q ss_pred cccc
Q 009601 527 VVSE 530 (531)
Q Consensus 527 ~v~~ 530 (531)
+++.
T Consensus 451 ~v~~ 454 (524)
T COG0459 451 EVLS 454 (524)
T ss_pred HHHH
Confidence 9875
|
|
| >cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=670.99 Aligned_cols=402 Identities=23% Similarity=0.314 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.++++.|+.+|..|+++|+|||||+||||||++++|+++|||||+||||+|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHhcCCc
Confidence 568899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--ch-hhHHhhhhccC------ChhhHhHH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~------~~~~l~~l 222 (531)
||+|+|+++||+++.++++.|+||..|++||++|.+.++++|++++++++ +. .|.++|+||++ ++++|+++
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886 44 89999999998 56889999
Q ss_pred HHHHHHhhccCCc----------eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecccc----
Q 009601 223 IAEAMSKVGRKGV----------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (531)
Q Consensus 223 i~~A~~~v~~~g~----------I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 288 (531)
+++|+.++++++. |.+++|++++|+ ++++|++|+++|.+|++ +|..++||+++++++++
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccc
Confidence 9999999998763 555789999999 99999999999999752 35567889998887764
Q ss_pred ---------CCH-----------HHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccc
Q 009601 289 ---------TNA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (531)
Q Consensus 289 ---------~~~-----------~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~ 348 (531)
+++ +++.++++.+++.|+||||++++|++++++.+..+++++ .+|+||+ +++++
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~ 309 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIERE 309 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----cCCHH
Confidence 232 345678999999999999999999544444444444443 4789888 66799
Q ss_pred hHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 009601 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (531)
Q Consensus 349 ~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~ 425 (531)
+|+|||++|||++++ +++++++++||+|+.|++. +++++++.+|..
T Consensus 310 ~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~-------------------------- 358 (515)
T cd03338 310 EIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN-------------------------- 358 (515)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCC--------------------------
Confidence 999999999999999 5888999999999999863 567888988754
Q ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHH
Q 009601 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (531)
Q Consensus 426 l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~ 504 (531)
++++|||+|||+|+.+++|++|+++||++++++++++| +|||||++||+++.+|++++.+.++.+| ++++
T Consensus 359 --------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~ 429 (515)
T cd03338 359 --------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQ-YCVR 429 (515)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHH-HHHH
Confidence 24799999999999999999999999999999999999 9999999999999999998877777777 8999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 505 IVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 505 ~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+|++||+.||++|++|||+|+.+++.
T Consensus 430 ~~a~al~~ip~~L~~NaG~d~~~~~~ 455 (515)
T cd03338 430 AFADALEVIPYTLAENAGLNPISIVT 455 (515)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999998875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-79 Score=668.62 Aligned_cols=395 Identities=24% Similarity=0.381 Sum_probs=357.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.++++.|++||..|+++|+|||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 26 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GDGT 101 (532)
T TIGR02343 26 LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDDEIGDGT 101 (532)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHHHhcCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc----h-hhHHhhhhccCC------hhhHh
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED----S-ELADVAAVSAGN------NYEVG 220 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~----~-~l~~va~ts~~~------~~~l~ 220 (531)
||+|+|+++||+++.+++++|+||+.|++||+.|++.++++|+++++++++ . .|.++|+|+++. .+.|+
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 181 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFA 181 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998753 3 799999998764 47799
Q ss_pred HHHHHHHHhhccC--C-----c--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc----
Q 009601 221 NMIAEAMSKVGRK--G-----V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK---- 287 (531)
Q Consensus 221 ~li~~A~~~v~~~--g-----~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~---- 287 (531)
+++++|+..+.+. + . |...+|++++|+ ++++|++|+++|.+|+ |+..++||||++++++
T Consensus 182 ~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~-------m~~~~~n~kI~l~~~~le~~ 253 (532)
T TIGR02343 182 EIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQ-------MPKEVKDAKIAILTCPFEPP 253 (532)
T ss_pred HHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCC-------CCeeecCCcEEEEEeecccc
Confidence 9999999988541 1 2 334699999999 9999999999999987 4556778999988875
Q ss_pred ---------cCCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcccc
Q 009601 288 ---------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (531)
Q Consensus 288 ---------i~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~ 347 (531)
+++++++ .++++++++.|+|||||+++|++.++++|..|+ +.+|+.+ ++
T Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~~~-----~~ 322 (532)
T TIGR02343 254 KPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVRWV-----GG 322 (532)
T ss_pred ccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEEcC-----CH
Confidence 4566655 677999999999999999999999999999884 4667744 47
Q ss_pred chHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eC--ceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHH
Q 009601 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TK--DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422 (531)
Q Consensus 348 ~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~--~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e 422 (531)
++|+|||++|||++++ +++++++++||+|++|+. +. ++++++.+|+++
T Consensus 323 ~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~---------------------- 375 (532)
T TIGR02343 323 HELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS---------------------- 375 (532)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC----------------------
Confidence 8899999999999999 588999999999999973 33 578999988763
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHH
Q 009601 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKV 501 (531)
Q Consensus 423 ~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~ 501 (531)
.++||+|||+|+.+++|.||+++||+++++++++++ +|||||++||+++++|++++.++++.+| +
T Consensus 376 -------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 441 (532)
T TIGR02343 376 -------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQ-Y 441 (532)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHH-H
Confidence 589999999999999999999999999999999996 9999999999999999999888888887 8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 502 GADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 502 ~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++++|++||+.||++|++|||+|+.+++.
T Consensus 442 ~i~~fa~ALe~ip~~La~NaG~d~~~~l~ 470 (532)
T TIGR02343 442 AIRAFADALEEIPMALAENSGLDPIGTLS 470 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999988764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=665.37 Aligned_cols=398 Identities=21% Similarity=0.343 Sum_probs=363.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (522)
T cd03340 15 KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDAEVGDGT 90 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHhHhCCCh
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc------h-hhHHhhhhccC------Chhh
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED------S-ELADVAAVSAG------NNYE 218 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~------~-~l~~va~ts~~------~~~~ 218 (531)
||+|+|+++||+++.++++.|+||+.|++||++|.+.+++.|+++++++++ . .|.++|+|+++ ++++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEF 170 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHH
Confidence 999999999999999999999999999999999999999999999998864 3 69999999876 5789
Q ss_pred HhHHHHHHHHhhccCC---c--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecccc-----
Q 009601 219 VGNMIAEAMSKVGRKG---V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI----- 288 (531)
Q Consensus 219 l~~li~~A~~~v~~~g---~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i----- 288 (531)
|++++++|+..+++++ . |...+|++++|+ ++++|++|+++|.+|+|.+ ++..++||+|+++++++
T Consensus 171 l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~~----~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 171 FAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFEQ----QPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred HHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCcccccc----CCccccCCeEEEEeCCCCCCcc
Confidence 9999999999998765 2 333589999999 8999999999999998754 56779999999999984
Q ss_pred --------CCHHH-----------HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccch
Q 009601 289 --------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (531)
Q Consensus 289 --------~~~~~-----------l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~ 349 (531)
+++.+ +.+.++.+++.|+++|+++++|++.++++|..+ +|++++ ++++++
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~------~I~~~~-----~v~~~~ 314 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADR------DIFCAG-----RVPEED 314 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eCCHHH
Confidence 44443 456788899999999999999999999999887 345665 556899
Q ss_pred HHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009601 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (531)
Q Consensus 350 L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l 426 (531)
|++||++|||++++ +++++++++||+|+.|+ ++++++++|.+|..+
T Consensus 315 l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------------------------- 363 (522)
T cd03340 315 LKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-------------------------- 363 (522)
T ss_pred HHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC--------------------------
Confidence 99999999999998 58889999999999998 567899999998652
Q ss_pred HHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHH
Q 009601 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (531)
Q Consensus 427 ~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~ 505 (531)
..+||++||+|+.+++|.+|+++||++++++++++| ||||||++||+++.+|++++.+..+.+| +++++
T Consensus 364 ---------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~-~~~~~ 433 (522)
T cd03340 364 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LVINA 433 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHHH
Confidence 589999999999999999999999999999999998 9999999999999999999877778777 89999
Q ss_pred HHHHHHHHHHHHHHHcCCCcccccc
Q 009601 506 VKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 506 ~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
|++||+.||++|++|||+|+.+++.
T Consensus 434 fa~aL~~ip~~La~NaG~d~~~~l~ 458 (522)
T cd03340 434 FAKALEIIPRQLCDNAGFDATDILN 458 (522)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999998875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-79 Score=666.97 Aligned_cols=395 Identities=21% Similarity=0.291 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (525)
T TIGR02344 15 RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhhhccCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc--h-hhHHhhhhccCC------hhhHhHH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAGN------NYEVGNM 222 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~~------~~~l~~l 222 (531)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++. . .|.++++|++++ ++.|+++
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l 170 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDL 170 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998873 3 789999887653 6899999
Q ss_pred HHHHHHhhccCC-----------ceE--eecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC
Q 009601 223 IAEAMSKVGRKG-----------VVT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (531)
Q Consensus 223 i~~A~~~v~~~g-----------~I~--v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 289 (531)
+++|+..+++++ .|+ ..+|++++|| ++++|++|++++.++ +|+.+++||+|++++++++
T Consensus 171 ~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (525)
T TIGR02344 171 ALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLE 242 (525)
T ss_pred HHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccc
Confidence 999999998653 133 3579999998 899999999997765 4788899999999999875
Q ss_pred C-------------HHHHHHH-----------HHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcc
Q 009601 290 N-------------ARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (531)
Q Consensus 290 ~-------------~~~l~~~-----------le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~ 345 (531)
. ++++.++ ++++.+.|++|||+++.|++.++++|..+ +|+|++ ++
T Consensus 243 ~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~-----~v 311 (525)
T TIGR02344 243 YKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIR-----RV 311 (525)
T ss_pred cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEe-----cC
Confidence 4 4565554 45888999999999999999999988775 567665 77
Q ss_pred ccchHHHHHHHhCCeEEecCCCccccCCCCCCCce-eeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009601 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (531)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~-~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~ 421 (531)
++++|+|||++|||++++ ++++++++.+|+ |+.|++ +++++++|++|+++
T Consensus 312 ~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 365 (525)
T TIGR02344 312 RKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--------------------- 365 (525)
T ss_pred CHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---------------------
Confidence 799999999999999999 588899999999 998886 56889999988763
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHH
Q 009601 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (531)
Q Consensus 422 e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (531)
.+|||+|||+|+.+++|.||+++||+++++++++++ +|||||++||++|.+|++++.+.++.+|
T Consensus 366 --------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~- 430 (525)
T TIGR02344 366 --------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ- 430 (525)
T ss_pred --------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH-
Confidence 589999999999999999999999999999999997 9999999999999999998888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 501 ~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+++++|++||+.||++||+|||+|+.+++.
T Consensus 431 ~~~~~~a~al~~ip~~La~NaG~d~~~~l~ 460 (525)
T TIGR02344 431 WPYRAVADALEIIPRTLAQNCGVNVIRTLT 460 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 899999999999999999999999998875
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=663.62 Aligned_cols=402 Identities=22% Similarity=0.316 Sum_probs=356.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||+ |+|++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 568899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--ch-hhHHhhhhccCC------hhhHhHH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN------NYEVGNM 222 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 222 (531)
||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|+++++|++ +. .|.++|+|++++ .+.|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886 44 799999998863 4678999
Q ss_pred HHHHHHhhccC---Cc-----eE--eecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC---
Q 009601 223 IAEAMSKVGRK---GV-----VT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (531)
Q Consensus 223 i~~A~~~v~~~---g~-----I~--v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~--- 289 (531)
+++|+..++++ +. |. ...|++++|+ ++++|++|+++|.++ .+|+..++||+|++++++++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~------~~mpk~i~n~kI~ll~~~Le~~~ 236 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRS------AGGPTRIEKAKIGLIQFQISPPK 236 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEecccccc------CCCCccccCCcEEEEecCCCCCc
Confidence 99999999762 32 22 3489999999 999999999999874 24777789999999988642
Q ss_pred ----------CH-----------HHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccc
Q 009601 290 ----------NA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (531)
Q Consensus 290 ----------~~-----------~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~ 348 (531)
++ +++.++++.+++.|+|||||+++|++++++.+..|.+.+ .+|+||+ +++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~ 310 (517)
T TIGR02342 237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----DIERE 310 (517)
T ss_pred ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----cCCHH
Confidence 32 245678999999999999999999544444444444443 4789888 66799
Q ss_pred hHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEE-E--eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 009601 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV-L--TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (531)
Q Consensus 349 ~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~-i--~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~ 425 (531)
+|+|||++|||++++ +++++++++||+|+.|+ + +++.++++.+++.
T Consensus 311 ~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~-------------------------- 359 (517)
T TIGR02342 311 EVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQN-------------------------- 359 (517)
T ss_pred HHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCC--------------------------
Confidence 999999999999999 58889999999999998 3 4567788887754
Q ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHH
Q 009601 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (531)
Q Consensus 426 l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~ 504 (531)
+++++||+|||+|+.+++|.+|+++||+++++++++++ +|||||++||++|.+|++++.+.++.+| ++++
T Consensus 360 --------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~ 430 (517)
T TIGR02342 360 --------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVES-YCVR 430 (517)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHH-HHHH
Confidence 25799999999999999999999999999999999986 9999999999999999999887888877 8999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 505 IVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 505 ~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+|++||+.||++|++|||+|+.+++.
T Consensus 431 ~~a~al~~ip~~La~NaG~d~~~~l~ 456 (517)
T TIGR02342 431 AFADALEVIPYTLAENAGLNPIDVVT 456 (517)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999998875
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-78 Score=658.36 Aligned_cols=394 Identities=23% Similarity=0.341 Sum_probs=357.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecC--CCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK--YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~--~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GD 149 (531)
+++++.|+.||..|+++|+|||||+||+|||+++ +|+++|||||+||+|+|+++||. |+|++++|++||+++||
T Consensus 12 ~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GD 87 (517)
T cd03336 12 ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHHhHhCC
Confidence 7899999999999999999999999999999998 59999999999999999999997 99999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc-----h-hhHHhhhhccC------Chh
Q 009601 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAG------NNY 217 (531)
Q Consensus 150 GTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~------~~~ 217 (531)
||||+|||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++ . .|.++|+|+++ +++
T Consensus 88 GTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~ 167 (517)
T cd03336 88 GTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKE 167 (517)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHH
Confidence 99999999999999999999999999999999999999999999999998841 2 78999998764 368
Q ss_pred hHhHHHHHHHHhhccC---Cc--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC---
Q 009601 218 EVGNMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (531)
Q Consensus 218 ~l~~li~~A~~~v~~~---g~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~--- 289 (531)
+|++++++|+..+++. .. |...+|++++|+ ++++|+++++++.++ |++.++||+|+++|++|+
T Consensus 168 ~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~le~~~ 238 (517)
T cd03336 168 HFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDTDK 238 (517)
T ss_pred HHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCCC--------CCCeeccccEEEEecCCCccc
Confidence 8999999999999642 22 344689999999 899999999986432 577899999999999764
Q ss_pred -----------CHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcccc
Q 009601 290 -----------NARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (531)
Q Consensus 290 -----------~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~ 347 (531)
+++++ .+.++.+++.|++++++++.|++.++++|..+ +|++|+.|+ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~-----~ 307 (517)
T cd03336 239 IKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHAD-----F 307 (517)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCC-----H
Confidence 55544 33578899999999999999999999998776 679999776 5
Q ss_pred chHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 009601 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (531)
Q Consensus 348 ~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~ 424 (531)
++|+|||++|||++++ +++++++++||+|+.|+. +++++++|.+|+.
T Consensus 308 ~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 357 (517)
T cd03336 308 DGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA------------------------- 357 (517)
T ss_pred HHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCC-------------------------
Confidence 6799999999999998 588999999999999974 5789999998865
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHH
Q 009601 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (531)
Q Consensus 425 ~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~ 503 (531)
+++|||+|||+|+.+++|.+|+++||++++++++++| +|||||++||+++..|++++++.++.+| +++
T Consensus 358 ----------~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 426 (517)
T cd03336 358 ----------GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKS-LAI 426 (517)
T ss_pred ----------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHH-HHH
Confidence 4689999999999999999999999999999999998 9999999999999999999888888877 899
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 504 DIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 504 ~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++|++||+.||++|++|||+|+.+++.
T Consensus 427 ~~~a~ALe~ip~~La~NaG~d~~~~l~ 453 (517)
T cd03336 427 EAFAKALRQLPTIIADNAGYDSAELVA 453 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999998875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-78 Score=662.26 Aligned_cols=397 Identities=21% Similarity=0.323 Sum_probs=359.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.+|..|+++|+|||||+||+|||+++.| ++|||||+||||+|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~~~GDGT 91 (522)
T TIGR02345 17 KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDSEVGDGT 91 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999 99999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC-----ch-hhHHhhhhccC------ChhhH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-----DS-ELADVAAVSAG------NNYEV 219 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~-----~~-~l~~va~ts~~------~~~~l 219 (531)
||+|||+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +. .|.++|+|+++ ++++|
T Consensus 92 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l 171 (522)
T TIGR02345 92 TSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFF 171 (522)
T ss_pred hhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999987 33 79999999976 57999
Q ss_pred hHHHHHHHHhhccCC------ceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC----
Q 009601 220 GNMIAEAMSKVGRKG------VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT---- 289 (531)
Q Consensus 220 ~~li~~A~~~v~~~g------~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~---- 289 (531)
++++++|+.++++++ .|...+|++++|+ ++++|++|+++|.+|+|.+ |+..++||+|+++|++|+
T Consensus 172 ~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~~----~~~~~~n~kIll~~~~Le~~~~ 246 (522)
T TIGR02345 172 SKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFEQ----QPKKFANPKILLLNVELELKAE 246 (522)
T ss_pred HHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCcccccc----CCceeccceEEEEecCcccCcc
Confidence 999999999998652 1333489999999 7999999999999998754 667799999999999863
Q ss_pred ---------CHHH-----------HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccch
Q 009601 290 ---------NARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (531)
Q Consensus 290 ---------~~~~-----------l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~ 349 (531)
++++ +.+.++++++.|+++++++++|++.++++|..+ +|++++ ++.+++
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~-----~v~~~d 315 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCAG-----RVSDED 315 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEEe-----cCCHHH
Confidence 3333 244577788899999999999999999999876 456665 556899
Q ss_pred HHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009601 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (531)
Q Consensus 350 L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l 426 (531)
+++|+++|||++++ +++++++++||+|+.++. +++++++|.||+++
T Consensus 316 l~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-------------------------- 364 (522)
T TIGR02345 316 LKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-------------------------- 364 (522)
T ss_pred HHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 99999999999998 588889999999999975 46789999988652
Q ss_pred HHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHH
Q 009601 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (531)
Q Consensus 427 ~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~ 505 (531)
++|||+|||+|+.+++|++|+++||+++++++++++ +|||||++||+++.+|++++.+..+.+| +++++
T Consensus 365 ---------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~i~~ 434 (522)
T TIGR02345 365 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQ-LIIEA 434 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHH-HHHHH
Confidence 589999999999999999999999999999999985 9999999999999999998877778777 89999
Q ss_pred HHHHHHHHHHHHHHHcCCCcccccc
Q 009601 506 VKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 506 ~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
|++||+.||++|++|||+|+.+++.
T Consensus 435 ~a~aL~~ip~~La~NaG~d~~~vl~ 459 (522)
T TIGR02345 435 FAKALEIIPRSLCENAGFDSIEILN 459 (522)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999998875
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >PTZ00212 T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-78 Score=658.64 Aligned_cols=394 Identities=21% Similarity=0.349 Sum_probs=358.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecC-----CCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK-----YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDL 146 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~-----~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~ 146 (531)
++++..|+.||..|+++|+|||||+||+|||+++ +|+++|||||+||||+|+++||. |+|++++|++||++
T Consensus 21 ~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~a~~qd~~ 96 (533)
T PTZ00212 21 ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDISKTQDEE 96 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHhhhhh
Confidence 7899999999999999999999999999999998 69999999999999999999997 99999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc-----h-hhHHhhhhccCC-----
Q 009601 147 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAGN----- 215 (531)
Q Consensus 147 ~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~~----- 215 (531)
+||||||+|+|+++||+++.+++++|+||+.|++||++|++.+++.|+++++++++ . .|.++|+|+++.
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~ 176 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTV 176 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999999999999999999998864 3 789999987643
Q ss_pred -hhhHhHHHHHHHHhhccC---Cc--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecccc-
Q 009601 216 -NYEVGNMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI- 288 (531)
Q Consensus 216 -~~~l~~li~~A~~~v~~~---g~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i- 288 (531)
.+.|++++++|+..+.+. .. |.+.+|++++|+ ++++|+++++++.+ .|+.+++||+|+++|++|
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKRLENCKILVANTPMD 247 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCccccCCcEEEEeCCCC
Confidence 578999999999998543 12 444699999999 89999999998644 267889999999999986
Q ss_pred -------------CCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCc
Q 009601 289 -------------TNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGE 344 (531)
Q Consensus 289 -------------~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~ 344 (531)
++++++ .+.++.+++.|+++++++++|++.++++|.++ +|+||+.
T Consensus 248 ~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr~----- 316 (533)
T PTZ00212 248 TDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAIEH----- 316 (533)
T ss_pred CCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEEec-----
Confidence 555544 23578889999999999999999999998876 5688873
Q ss_pred cccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009601 345 RKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (531)
Q Consensus 345 ~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~ 421 (531)
+++++++|||++|||++++ +++++++++||+|+.|+ ++++++++|.+|..
T Consensus 317 v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~---------------------- 369 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK---------------------- 369 (533)
T ss_pred CCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC----------------------
Confidence 4578999999999999998 58889999999999998 67889999998864
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHH
Q 009601 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (531)
Q Consensus 422 e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (531)
+++|||+|||+|+.+++|+||+++|||+++++++++| +|||||++|+++|.+|++++++..+.+|
T Consensus 370 -------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~- 435 (533)
T PTZ00212 370 -------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS- 435 (533)
T ss_pred -------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH-
Confidence 4799999999999999999999999999999999998 9999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 501 ~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+++++|++||+.||++|++|||+|+.+++.
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~~~vl~ 465 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDSAELVS 465 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 899999999999999999999999998875
|
|
| >cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=650.36 Aligned_cols=378 Identities=21% Similarity=0.317 Sum_probs=347.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~~GDGT 90 (480)
T cd03337 15 RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHHHhCCCc
Confidence 779999999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--ch-hhHHhhhhccC------ChhhHhHH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~------~~~~l~~l 222 (531)
||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|++++++++ +. .|.++++|+++ +++.|+++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~l 170 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNL 170 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 79999999987 56889999
Q ss_pred HHHHHHhhccC--C---------ceE--eecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC
Q 009601 223 IAEAMSKVGRK--G---------VVT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (531)
Q Consensus 223 i~~A~~~v~~~--g---------~I~--v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 289 (531)
+++|+..++++ + .|+ ..+|++++|| ++++|++|++++.+| +|+.+++||+|++++++|+
T Consensus 171 v~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 171 ALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLE 242 (480)
T ss_pred HHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcc
Confidence 99999999864 2 133 3579999998 999999999998886 4788899999999999987
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCcc
Q 009601 290 NARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLA 369 (531)
Q Consensus 290 ~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~ 369 (531)
. |||++++|+++++++|.++ +|++|+ ++++++|+|||++|||++++ +
T Consensus 243 ~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~rIa~~tGa~ii~-----~ 289 (480)
T cd03337 243 Y-----------------LVITEKGVSDLAQHYLVKA------GITALR-----RVRKTDNNRIARACGATIVN-----R 289 (480)
T ss_pred e-----------------EEEeCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHHCCEEec-----c
Confidence 6 9999999999999999887 578887 46689999999999999998 5
Q ss_pred ccCCCCCCCcee-eEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 009601 370 LDKVGKEVLGNA-SKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQ 445 (531)
Q Consensus 370 l~~~~~~~lG~~-~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~ 445 (531)
+++++++.||+| +.++. ++++++++++|+++ +.+||+|||+
T Consensus 290 ~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~ 334 (480)
T cd03337 290 PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-----------------------------------KACTILLRGA 334 (480)
T ss_pred hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-----------------------------------CEEEEEEECC
Confidence 888889999995 44443 46788999988763 6899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 009601 446 TETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVN 524 (531)
Q Consensus 446 t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d 524 (531)
|+.+++|.||+++||+++++++++++ +|||||++||++|.+|++++.+.++.+| +++++|++||+.||++|++|||+|
T Consensus 335 t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~La~NaG~d 413 (480)
T cd03337 335 SKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQ-WPYKAVASALEVIPRTLAQNCGAN 413 (480)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996 9999999999999999998888888887 899999999999999999999999
Q ss_pred cccccc
Q 009601 525 GSVVSE 530 (531)
Q Consensus 525 ~~~v~~ 530 (531)
+.+++.
T Consensus 414 ~~~~l~ 419 (480)
T cd03337 414 VIRTLT 419 (480)
T ss_pred HHHHHH
Confidence 998875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=657.08 Aligned_cols=394 Identities=23% Similarity=0.320 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
++++..|+.+|..|+++|+|||||+||||||++++|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~~~GDGT 92 (531)
T TIGR02346 17 EEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQENEIGDGT 92 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 459999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhccc-ccCc---h-hhHHhhhhccC-----ChhhHhH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVED---S-ELADVAAVSAG-----NNYEVGN 221 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~-~v~~---~-~l~~va~ts~~-----~~~~l~~ 221 (531)
||+|||+++||+++.+++++|+||..|++||+.|++.+++.|+++++ ++++ . .|.++++|+++ ++++|++
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~ 172 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQ 172 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999986 7644 3 78899888774 3889999
Q ss_pred HHHHHHHhhccCC--c-----e--EeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecccc----
Q 009601 222 MIAEAMSKVGRKG--V-----V--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (531)
Q Consensus 222 li~~A~~~v~~~g--~-----I--~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 288 (531)
++++|+.++++++ . | ...+|++++|+ ++++|++|++++. .+++.++||||+++++++
T Consensus 173 l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~~l~~~~ 242 (531)
T TIGR02346 173 LVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSCPLDTAT 242 (531)
T ss_pred HHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEecCcCCCc
Confidence 9999999998754 2 2 22489999999 9999999999832 145678899999998873
Q ss_pred ---------CCHH-----------HHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccc
Q 009601 289 ---------TNAR-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (531)
Q Consensus 289 ---------~~~~-----------~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~ 348 (531)
+++. ++.++++.+++.|+||||++++|++.++++|..+ +|+||++|+ ..
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~-----~~ 311 (531)
T TIGR02346 243 TETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPS-----KF 311 (531)
T ss_pred ccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCC-----HH
Confidence 3333 3567799999999999999999999999988754 789999887 46
Q ss_pred hHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHH
Q 009601 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (531)
Q Consensus 349 ~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~ 425 (531)
+|+|||.+|||++++ +++++++++||+|++|++ +++++.++.++..
T Consensus 312 ~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-------------------------- 360 (531)
T TIGR02346 312 ELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-------------------------- 360 (531)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC--------------------------
Confidence 899999999999998 588888999999999985 4678888987652
Q ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHH
Q 009601 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (531)
Q Consensus 426 l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~ 504 (531)
.++++||+|||+|+.+++|++|+++||++++++++++| +|||||++||+++.+|++++.+..+.+| ++++
T Consensus 361 --------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~-~~~~ 431 (531)
T TIGR02346 361 --------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQ-YAIK 431 (531)
T ss_pred --------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHH
Confidence 25799999999999999999999999999999999999 9999999999999999998877778776 8999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 505 IVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 505 ~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+|++||+.||++|++|||+|+.+++.
T Consensus 432 ~~a~aL~~ip~~L~~NaG~d~~~~~~ 457 (531)
T TIGR02346 432 KFAEAFEIIPRTLAENAGLNPNEVIP 457 (531)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999998875
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-76 Score=644.50 Aligned_cols=394 Identities=23% Similarity=0.347 Sum_probs=354.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCC--CCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKY--GAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~--g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GD 149 (531)
.+++..|++|+..|+++|+|||||+||+|||+++. |+++|||||+|||++|+++||. |+|++++|++||+++||
T Consensus 13 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd~~~GD 88 (519)
T TIGR02341 13 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQDDEVGD 88 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhHhhhCC
Confidence 77999999999999999999999999999999985 9999999999999999999997 99999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc-----h-hhHHhhhhccCC------hh
Q 009601 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAGN------NY 217 (531)
Q Consensus 150 GTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~~------~~ 217 (531)
||||+|||+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ . .|.++|+|+++. .+
T Consensus 89 GTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~ 168 (519)
T TIGR02341 89 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKD 168 (519)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999998853 2 789999988764 47
Q ss_pred hHhHHHHHHHHhhccC---CceEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCC--
Q 009601 218 EVGNMIAEAMSKVGRK---GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITN-- 290 (531)
Q Consensus 218 ~l~~li~~A~~~v~~~---g~I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~-- 290 (531)
.|++++++|+..+.+. ..|.+ .+|++++|+ ++++|+++++++.+ .++..++||+|+++|++|+.
T Consensus 169 ~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~Le~~~ 239 (519)
T TIGR02341 169 HFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKRIENAKILIANTPMDTDK 239 (519)
T ss_pred HHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCceeeccccEEEEecCCCCCc
Confidence 7999999999998432 23444 489999999 89999999998543 25778999999999998743
Q ss_pred ------------HHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcccc
Q 009601 291 ------------ARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (531)
Q Consensus 291 ------------~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~ 347 (531)
++++ .++++.+++.|++++++++.|++.++++|..+ +|++|+.|+ +
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~-----~ 308 (519)
T TIGR02341 240 VKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHAD-----F 308 (519)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCC-----H
Confidence 3333 23477889999999999999999999988775 679998776 6
Q ss_pred chHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 009601 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (531)
Q Consensus 348 ~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~ 424 (531)
.+|+|||++|||++++ +++++++++||+|+.|+. +++++++|.+|++
T Consensus 309 ~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 358 (519)
T TIGR02341 309 EGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL------------------------- 358 (519)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCC-------------------------
Confidence 6999999999999999 588889999999998874 5778999998875
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHH
Q 009601 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (531)
Q Consensus 425 ~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~ 503 (531)
+++|||+|||+|+.+++|.+|+++||+++++++++++ +|||||++||+++..|++++++.++.+| +++
T Consensus 359 ----------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 427 (519)
T TIGR02341 359 ----------GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEA-LAV 427 (519)
T ss_pred ----------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHH-HHH
Confidence 4699999999999999999999999999999999996 9999999999999999998877778777 899
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 504 DIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 504 ~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++|++||+.||++|++|||+|+.+++.
T Consensus 428 ~~~a~Ale~ip~~La~NaG~d~~~~l~ 454 (519)
T TIGR02341 428 EAFARALRQLPTIIADNAGFDSAELVA 454 (519)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999998875
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-76 Score=638.54 Aligned_cols=381 Identities=23% Similarity=0.296 Sum_probs=345.6
Q ss_pred cHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCc
Q 009601 71 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDG 150 (531)
Q Consensus 71 ~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDG 150 (531)
.++++..|+++|..|+++|++||||+||+|||++++|+++|||||+||+++|+++||+ |+|++++|++||+++|||
T Consensus 6 ~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~~GDG 81 (472)
T cd03341 6 LEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEEIGDG 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCC
Confidence 3789999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccc-cCc---h-hhHHhhhhcc-----CChhhHh
Q 009601 151 TTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE-VED---S-ELADVAAVSA-----GNNYEVG 220 (531)
Q Consensus 151 TTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~-v~~---~-~l~~va~ts~-----~~~~~l~ 220 (531)
|||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|++++++ +++ . .+.++++|++ +++++|+
T Consensus 82 TTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~ 161 (472)
T cd03341 82 TNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLS 161 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999865 543 2 5778888775 3578999
Q ss_pred HHHHHHHHhhccC--Cc-------eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCH
Q 009601 221 NMIAEAMSKVGRK--GV-------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA 291 (531)
Q Consensus 221 ~li~~A~~~v~~~--g~-------I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~ 291 (531)
+++++|+.+++++ |. |...+|++++|| ++++|++|++.+. .++++++||+|++++++++.
T Consensus 162 ~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~Le~- 230 (472)
T cd03341 162 PLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPFDI- 230 (472)
T ss_pred HHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEeccccC-
Confidence 9999999999875 43 233589999999 9999999987531 24578999999999999887
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCcccc
Q 009601 292 RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALD 371 (531)
Q Consensus 292 ~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~ 371 (531)
|+||||++++|+++++++|..+ +|+||++|+ +++|+|||++|||++++ +++
T Consensus 231 -------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~-----~~~ 281 (472)
T cd03341 231 -------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLP-----RLG 281 (472)
T ss_pred -------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEec-----ccc
Confidence 8999999999999999987643 789999887 78899999999999998 578
Q ss_pred CCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHH
Q 009601 372 KVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 448 (531)
Q Consensus 372 ~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~ 448 (531)
+++++++|+|++|++. ++++++|.+|++ .++++||+|||+|+.
T Consensus 282 ~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~----------------------------------~~~~~TI~lrG~t~~ 327 (472)
T cd03341 282 APTPEEIGYCDSVYVEEIGDTKVVVFRQNKE----------------------------------DSKIATIVLRGATQN 327 (472)
T ss_pred cCCHhHCCCceEEEEEEECCeeEEEEEccCC----------------------------------CCCeEEEEEECCCHH
Confidence 8889999999999864 489999988754 147899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Q 009601 449 ELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSV 527 (531)
Q Consensus 449 ~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 527 (531)
+++|+||+++||++++++++++| +|||||++||+++..|++++.+..+.++ +++++|++||+.||++|++|||+||.+
T Consensus 328 ~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~L~~NaG~d~~~ 406 (472)
T cd03341 328 ILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQ-YAIKKFAEAFEVVPRTLAENAGLDATE 406 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999 9999999999999999998877777776 899999999999999999999999998
Q ss_pred ccc
Q 009601 528 VSE 530 (531)
Q Consensus 528 v~~ 530 (531)
++.
T Consensus 407 ~~~ 409 (472)
T cd03341 407 VLS 409 (472)
T ss_pred HHH
Confidence 875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd00309 chaperonin_type_I_II chaperonin families, type I and type II | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-76 Score=635.96 Aligned_cols=382 Identities=38% Similarity=0.552 Sum_probs=352.0
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhccc
Q 009601 66 LHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145 (531)
Q Consensus 66 i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~ 145 (531)
..++ ++++..|++||..|++++++||||+||+|||+++.|+++|||||+||+|+|+++||. |+|+++++++||+
T Consensus 3 ~~~~--~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~~ 76 (464)
T cd00309 3 REFG--EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQDD 76 (464)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHHh
Confidence 4566 899999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhccccc--Cch-hhHHhhhhccC------Ch
Q 009601 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV--EDS-ELADVAAVSAG------NN 216 (531)
Q Consensus 146 ~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v--~~~-~l~~va~ts~~------~~ 216 (531)
++||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++++ .+. .+.++++|+++ ++
T Consensus 77 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~ 156 (464)
T cd00309 77 EVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGD 156 (464)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccch
Confidence 9999999999999999999999999999999999999999999999999999984 444 89999999998 78
Q ss_pred hhHhHHHHHHHHhhcc------CCceEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecccc
Q 009601 217 YEVGNMIAEAMSKVGR------KGVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI 288 (531)
Q Consensus 217 ~~l~~li~~A~~~v~~------~g~I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i 288 (531)
+++++++++|+.++++ .+.|++ .+|++++|| ++++|++|+++|.+|+ |+.+++||+|++++++|
T Consensus 157 ~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~-------m~~~~~n~~Ili~~~~L 228 (464)
T cd00309 157 DFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKL 228 (464)
T ss_pred HHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCC-------CceeecCceEEEEecCc
Confidence 9999999999999988 456555 589999999 8999999999999997 46789999999999998
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCc
Q 009601 289 TNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGL 368 (531)
Q Consensus 289 ~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~ 368 (531)
+. +||++++|+++++++|..+ +|++|+. +++++|+|||++|||++++
T Consensus 229 e~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~~-----~~~~~L~~Ia~~tGa~ii~----- 275 (464)
T cd00309 229 EY-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVS----- 275 (464)
T ss_pred ce-----------------EEecCCCcCHHHHHHHHHC------CeEEEEe-----CCHHHHHHHHHHhCCEEec-----
Confidence 87 7788888999999998875 6788885 5689999999999999998
Q ss_pred cccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCC
Q 009601 369 ALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQ 445 (531)
Q Consensus 369 ~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~ 445 (531)
++++++++.+|+|+.|++ +++++++|.++.. +++|||+|||+
T Consensus 276 ~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-----------------------------------~~~~TIllrG~ 320 (464)
T cd00309 276 RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-----------------------------------GKVATILLRGA 320 (464)
T ss_pred ccccCCcccCccccEEEEEEEcCeeEEEEEecCC-----------------------------------CCEEEEEEeCC
Confidence 478888999999999986 4567888887754 36899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 009601 446 TETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVN 524 (531)
Q Consensus 446 t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d 524 (531)
|+.+++|+||+++||+++++++++++ +|||||++||+++++|++++.+.++.+| +++++|++||+.||++|++|||+|
T Consensus 321 t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d 399 (464)
T cd00309 321 TEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQ-LGIEAFADALEVIPRTLAENAGLD 399 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996 9999999999999999999877777776 899999999999999999999999
Q ss_pred cccccc
Q 009601 525 GSVVSE 530 (531)
Q Consensus 525 ~~~v~~ 530 (531)
+.+++.
T Consensus 400 ~~~~~~ 405 (464)
T cd00309 400 PIEVVT 405 (464)
T ss_pred HHHHHH
Confidence 988764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-74 Score=574.03 Aligned_cols=399 Identities=21% Similarity=0.338 Sum_probs=363.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.-..-+|+.+|..+++.++|||||+||||+|++..|+++|||||+||+|-+++-||+ |+.++++|++||.|+||||
T Consensus 19 k~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPa----aktlVdia~sQDaEVGDGT 94 (543)
T KOG0361|consen 19 KGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPA----AKTLVDIARSQDAEVGDGT 94 (543)
T ss_pred chhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChh----HHHHHHHHhhccccccCCc
Confidence 345568899999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc--h-----hhHHhhhhccC------Chhh
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-----ELADVAAVSAG------NNYE 218 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-----~l~~va~ts~~------~~~~ 218 (531)
||||+||+|+|+++..+++.|+||..|+++|++|...+++.|+++++.++. . .|++.|.|+++ ..++
T Consensus 95 TSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~f 174 (543)
T KOG0361|consen 95 TSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEF 174 (543)
T ss_pred eeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 999999999999999999999999999999999999999999999998872 1 57888888764 3799
Q ss_pred HhHHHHHHHHhhccC---Cc--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc------
Q 009601 219 VGNMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK------ 287 (531)
Q Consensus 219 l~~li~~A~~~v~~~---g~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~------ 287 (531)
|+++++||+..+..+ .. |++.+||+++|| .+++|+.|.+.|....| +.+|+.|.||||+++|..
T Consensus 175 F~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELElKaE 249 (543)
T KOG0361|consen 175 FAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELELKAE 249 (543)
T ss_pred HHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEeeeeeeccc
Confidence 999999999999753 22 667899999999 79999999999877665 568889999999999875
Q ss_pred -------cCCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccch
Q 009601 288 -------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (531)
Q Consensus 288 -------i~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~ 349 (531)
+++++++ .+.|+++..+|.++|+..-.|.|.|-++|..+.+ .+.|+++.++
T Consensus 250 kdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----------FCAGRV~~eD 318 (543)
T KOG0361|consen 250 KDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----------FCAGRVPEED 318 (543)
T ss_pred ccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----------eecCcCCHHH
Confidence 3455554 3458899999999999999999999999987643 4678999999
Q ss_pred HHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009601 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (531)
Q Consensus 350 L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l 426 (531)
|.|+..+|||++.+ +..++.++.||.|..++ ++++.|-+|+||+.
T Consensus 319 l~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~--------------------------- 366 (543)
T KOG0361|consen 319 LNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPK--------------------------- 366 (543)
T ss_pred HHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCc---------------------------
Confidence 99999999999998 57888999999999997 57899999999986
Q ss_pred HHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHH
Q 009601 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (531)
Q Consensus 427 ~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~ 505 (531)
.+.||+++||+-++.++|.+|++|||++++|.|+++. ||+|||++||++|++|++++.++.+++| +.+.+
T Consensus 367 --------aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q-~~i~A 437 (543)
T KOG0361|consen 367 --------AKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LFINA 437 (543)
T ss_pred --------cceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHH-HHHHH
Confidence 3689999999999999999999999999999999998 9999999999999999999999999987 88999
Q ss_pred HHHHHHHHHHHHHHHcCCCccccccC
Q 009601 506 VKRALCYPLKLIAKNAGVNGSVVSEK 531 (531)
Q Consensus 506 ~a~AL~~ip~~L~~NaG~d~~~v~~k 531 (531)
|++|||.||++||+|||+|..+++.|
T Consensus 438 ~akalEvIPrqLc~NaGfDa~~ilnk 463 (543)
T KOG0361|consen 438 YAKALEVIPRQLCDNAGFDATNILNK 463 (543)
T ss_pred HHHHHHHhHHHHhhhcCCcHHHHHHH
Confidence 99999999999999999999988764
|
|
| >PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=588.61 Aligned_cols=382 Identities=29% Similarity=0.473 Sum_probs=343.9
Q ss_pred HHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCccchHHHHHHHHHHH
Q 009601 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAE 164 (531)
Q Consensus 85 la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGTTtvvvLa~~LL~~ 164 (531)
|+++|++||||+||+|||+++.|+++|||||+||+++++++||+ ++|+++++++|++++||||||+|+|+++||++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch--hhHHhhhhccCCh------hhHhHHHHHHHHhhccC---
Q 009601 165 GVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS--ELADVAAVSAGNN------YEVGNMIAEAMSKVGRK--- 233 (531)
Q Consensus 165 a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~--~l~~va~ts~~~~------~~l~~li~~A~~~v~~~--- 233 (531)
+.+++++|+||..|++||+.+.+.+++.|++++++++.+ .+.++++|+++++ +.|++++++|+..+..+
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999988764 7999999998876 89999999999444211
Q ss_pred Cc--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHH------------------
Q 009601 234 GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD------------------ 293 (531)
Q Consensus 234 g~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~------------------ 293 (531)
+. +....|++++|| ++++|++|+++|.+| +|+..+++|+|++++++|+..+.
T Consensus 157 ~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSK 228 (485)
T ss_dssp GGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHH
T ss_pred cchhhhhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHh
Confidence 12 233588899999 899999999999887 46777899999999999876655
Q ss_pred -----HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCc
Q 009601 294 -----LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGL 368 (531)
Q Consensus 294 -----l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~ 368 (531)
+.++++++.+.|+++||++++|++.++++|..+++ .++ .++++.+|++|+.+||+++++
T Consensus 229 ~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~~i-----~~v~~~~l~~i~~~tg~~ii~----- 292 (485)
T PF00118_consen 229 QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI------LVI-----RRVSKEDLERIARATGASIIS----- 292 (485)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH------EEE-----SSEHHHHHHHHHHHHTSBEBS-----
T ss_pred hhhhhhccccceEeeeccceeeeecccccccchhhhhhhh------hcc-----ccchHHHHHhhhcccCCcEec-----
Confidence 88899999999999999999999999999988854 444 366799999999999999998
Q ss_pred cccCCCCCCCceeeEE---EEeCceEEEEcC--CCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeC
Q 009601 369 ALDKVGKEVLGNASKV---VLTKDTTTIVGD--GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVG 443 (531)
Q Consensus 369 ~l~~~~~~~lG~~~~v---~i~~~~~~~~~g--~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~ 443 (531)
++++++++.+|+|+.+ ++++++++++++ +. .++.+||+||
T Consensus 293 ~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till~ 337 (485)
T PF00118_consen 293 SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILLR 337 (485)
T ss_dssp SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEEE
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEec
Confidence 4788888889999999 567899999983 43 3579999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009601 444 AQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAG 522 (531)
Q Consensus 444 G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG 522 (531)
|+|+.+++|.+++++||+++++++++++ +|||||++|++++++|++++.+.++.++ +++++|++||+.||++|++|||
T Consensus 338 g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG 416 (485)
T PF00118_consen 338 GPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQ-LAIEAFADALESIPKTLAQNAG 416 (485)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHTTHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchh-hhHHHHHHHHHHhhhhhhhccC
Confidence 9999999999999999999999999987 9999999999999999999888777766 8999999999999999999999
Q ss_pred CCcccccc
Q 009601 523 VNGSVVSE 530 (531)
Q Consensus 523 ~d~~~v~~ 530 (531)
+|+.+++.
T Consensus 417 ~~~~~~~~ 424 (485)
T PF00118_consen 417 LDSSEVIS 424 (485)
T ss_dssp STHHHHHH
T ss_pred CCceeeeh
Confidence 99988764
|
Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A .... |
| >KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-70 Score=544.65 Aligned_cols=400 Identities=24% Similarity=0.333 Sum_probs=355.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.++|.+|+++.+.+++.++|||||+||||||....|+++|||||+||||.|++-||+ |+|+++++..||.++||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccccccCCc
Confidence 778999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--ch-hhHHhhhhccCC------hhhHhHH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN------NYEVGNM 222 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 222 (531)
||||+||++||+.+.+|+++|+||+.|...|+.|.+..+++|++++.|++ +. .|.+-|+||+|+ ...++++
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999999998876 44 688889998863 5779999
Q ss_pred HHHHHHhhcc-C-------CceE--eecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecccc----
Q 009601 223 IAEAMSKVGR-K-------GVVT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (531)
Q Consensus 223 i~~A~~~v~~-~-------g~I~--v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 288 (531)
.++|+.++-. . ..|+ ++.||+++|+ ++++|++|++..... ..|..++++||-++.+.|
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCC
Confidence 9999999854 2 1233 3699999999 999999999864332 145677888888877643
Q ss_pred ---------CCHH-----------HHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccc
Q 009601 289 ---------TNAR-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (531)
Q Consensus 289 ---------~~~~-----------~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~ 348 (531)
++.. .++++++++++.|+++++++++|=.++++-|..|.+. .++|++|| ++.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~-klkimvik-----dieRe 326 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIK-----DIERE 326 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEc-----cccHh
Confidence 2332 3578899999999999999999887777777766653 46899998 66799
Q ss_pred hHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE----eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 009601 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL----TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (531)
Q Consensus 349 ~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i----~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~ 424 (531)
++|.+|+.+|.+++. +++.++++.||+++-++. ++.+++-+.|+.+.
T Consensus 327 diefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~------------------------ 377 (534)
T KOG0358|consen 327 DIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA------------------------ 377 (534)
T ss_pred hHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC------------------------
Confidence 999999999999999 599999999999998874 34477777776553
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHH
Q 009601 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (531)
Q Consensus 425 ~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~ 503 (531)
|..++|++||.+...++|.+|++|||||++|+.++.. ++||||+.||.++..|.+++.+..|.+. |.+
T Consensus 378 ----------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~-yc~ 446 (534)
T KOG0358|consen 378 ----------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEA-YCW 446 (534)
T ss_pred ----------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchh-HHH
Confidence 6789999999999999999999999999999999998 9999999999999999999999999888 899
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccccc
Q 009601 504 DIVKRALCYPLKLIAKNAGVNGSVVS 529 (531)
Q Consensus 504 ~~~a~AL~~ip~~L~~NaG~d~~~v~ 529 (531)
++|++|||.||.|||+|||++|..++
T Consensus 447 rafA~AlEvIP~tLAeNAGLnpI~~V 472 (534)
T KOG0358|consen 447 RAFADALEVIPYTLAENAGLNPIATV 472 (534)
T ss_pred HHHHHHHhcccHhHHhhCCCChhhHH
Confidence 99999999999999999999999775
|
|
| >KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=530.29 Aligned_cols=394 Identities=24% Similarity=0.362 Sum_probs=354.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecC--CCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK--YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~--~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GD 149 (531)
+.+|...+.|...+.|+|+|||||+||+||+... .|.+.+||||+||||++.+++|+ ||++++.++-||+|+||
T Consensus 17 e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQD~EvGD 92 (527)
T KOG0363|consen 17 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 92 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheeccccccccccCC
Confidence 7899999999999999999999999999999963 46799999999999999999999 99999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch------hhHHhhhhccC------Chh
Q 009601 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS------ELADVAAVSAG------NNY 217 (531)
Q Consensus 150 GTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~------~l~~va~ts~~------~~~ 217 (531)
|||||+||+++||+|+.+|+.+.+||+.|+.||+.|...+++.|.+.+++..++ +|.++|+|.+. ..+
T Consensus 93 GTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~ke 172 (527)
T KOG0363|consen 93 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKE 172 (527)
T ss_pred CceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999988765422 79999999764 468
Q ss_pred hHhHHHHHHHHhhccCC-----ceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC---
Q 009601 218 EVGNMIAEAMSKVGRKG-----VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (531)
Q Consensus 218 ~l~~li~~A~~~v~~~g-----~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~--- 289 (531)
+|++|+++|+.++...+ .|.++.||+++|| ++-+|+.+++.+-. ++|+.++||+||+-+.+++
T Consensus 173 hFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDK 243 (527)
T KOG0363|consen 173 HFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 243 (527)
T ss_pred HHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCCcccc
Confidence 99999999999986543 2555799999999 89999999986432 3677899999999887632
Q ss_pred -----------CH-----------HHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcccc
Q 009601 290 -----------NA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (531)
Q Consensus 290 -----------~~-----------~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~ 347 (531)
+. +.+.+.++++.+.|+|++|-.+-|.+...++|... +|++|....|
T Consensus 244 vKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHADF----- 312 (527)
T KOG0363|consen 244 VKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHADF----- 312 (527)
T ss_pred eeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeecccc-----
Confidence 21 13567899999999999999999999999887664 6788887776
Q ss_pred chHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHH
Q 009601 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (531)
Q Consensus 348 ~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~ 424 (531)
+-+||++..|||.+++ ++++++...||+|+.++ +++|+++.|.|+.-
T Consensus 313 dGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~------------------------- 362 (527)
T KOG0363|consen 313 DGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL------------------------- 362 (527)
T ss_pred hhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeeccccc-------------------------
Confidence 5678999999999999 69999999999999986 68999999999864
Q ss_pred HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHH
Q 009601 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (531)
Q Consensus 425 ~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~ 503 (531)
|..|||++||+|++++||.+|++|||||++...+++. +|.||||.||.+++.+.+++...++++. +++
T Consensus 363 ----------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea-~Ai 431 (527)
T KOG0363|consen 363 ----------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEA-LAI 431 (527)
T ss_pred ----------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhh-HHH
Confidence 5689999999999999999999999999999999998 9999999999999999999999999987 899
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 504 DIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 504 ~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
.+|++||..+|.+||.|||+|+.+++.
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva 458 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVA 458 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHH
Confidence 999999999999999999999988763
|
|
| >KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=525.97 Aligned_cols=394 Identities=24% Similarity=0.327 Sum_probs=349.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCc
Q 009601 71 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDG 150 (531)
Q Consensus 71 ~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDG 150 (531)
.+++...++++|++++++++|+|||+||||||+|++|++.+|||.+||+++++++||+ ||||++++++|+++.|||
T Consensus 24 ~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGDg 99 (537)
T KOG0362|consen 24 EEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGDG 99 (537)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCCC
Confidence 4788889999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccc-cCch-hhHHhhhhc-----cCChhhHhHHH
Q 009601 151 TTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE-VEDS-ELADVAAVS-----AGNNYEVGNMI 223 (531)
Q Consensus 151 TTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~-v~~~-~l~~va~ts-----~~~~~~l~~li 223 (531)
|+++|+|+++||++|.++|..|++|.+|+.||+.|.+.+++.|+++... +.+. +...+++++ ..+++++++++
T Consensus 100 tnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lV 179 (537)
T KOG0362|consen 100 TNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLV 179 (537)
T ss_pred ceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997542 2222 223445543 34689999999
Q ss_pred HHHHHhhccCC-----c--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc---------
Q 009601 224 AEAMSKVGRKG-----V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK--------- 287 (531)
Q Consensus 224 ~~A~~~v~~~g-----~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~--------- 287 (531)
++|+..+.+.+ . +.+..|++++|| .++.||+|.+. +++.+..-+.++|.++.||
T Consensus 180 a~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~---------~eG~v~~ak~arvAvf~cP~d~~~TEtk 249 (537)
T KOG0362|consen 180 AKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRD---------PEGEVKSAKDARVAVFACPFDIAQTETK 249 (537)
T ss_pred HHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccc---------cCCcccccccceeEEEecCCCcccccCc
Confidence 99999998873 1 334699999999 89999999987 2344466678999999998
Q ss_pred ----cCCHHHHHH-----------HHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHH
Q 009601 288 ----ITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDD 352 (531)
Q Consensus 288 ----i~~~~~l~~-----------~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ 352 (531)
|++++++++ .++.+...|++++++.+.+++.+|+++ |++ +|++++.++ +.+|.+
T Consensus 250 gTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~S-----k~eLrr 318 (537)
T KOG0362|consen 250 GTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQINS-----KFDLRR 318 (537)
T ss_pred ceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEecc-----HhhHHH
Confidence 677776654 477888899999999999999998864 543 899999988 899999
Q ss_pred HHHHhCCeEEecCCCccccCCCCCCCceeeEEE---EeCceEEEEcC-CCChhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009601 353 IAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGD-GSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428 (531)
Q Consensus 353 ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~g-~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~e 428 (531)
+|+..||++.+ ++..+.++.+|+|++|. ++++.+++|.. ++.
T Consensus 319 lcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~----------------------------- 364 (537)
T KOG0362|consen 319 LCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTG----------------------------- 364 (537)
T ss_pred HHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccCC-----------------------------
Confidence 99999999998 68899999999999986 46777777764 322
Q ss_pred HHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHH
Q 009601 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVK 507 (531)
Q Consensus 429 Rl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a 507 (531)
++++||+|||+|+..+|+.||.++|++++.+..++++ ++||+|++|++|++.|.+++++++|.+| ++++.|+
T Consensus 365 ------~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q-~Aik~fa 437 (537)
T KOG0362|consen 365 ------TRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQ-LAIKKFA 437 (537)
T ss_pred ------CceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcch-hHHHHHH
Confidence 4689999999999999999999999999999999998 9999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHcCCCcccccc
Q 009601 508 RALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 508 ~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+||+.+|++|++|||+++.+|+.
T Consensus 438 ~Ale~~PktlaEnagl~~~evia 460 (537)
T KOG0362|consen 438 EALEVLPKTLAENAGLAVTEVIA 460 (537)
T ss_pred HHhccccHhHHHhcCCcHHHHHH
Confidence 99999999999999999999875
|
|
| >KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=512.77 Aligned_cols=400 Identities=23% Similarity=0.312 Sum_probs=355.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
+.+|..|..|+..++++|++||||-|+|||+++.+|++.+||||+|||+.+.++||+ +|+++++++.||+++||||
T Consensus 18 ~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~evgDgt 93 (545)
T KOG0360|consen 18 ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEEVGDGT 93 (545)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhccccccCCc
Confidence 778888999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh-cccccCch---hhHHhhhhccCC------hhhHhH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVEDS---ELADVAAVSAGN------NYEVGN 221 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~-~s~~v~~~---~l~~va~ts~~~------~~~l~~ 221 (531)
|+||+++++||+.+.+|+..++||+.|+.||+.|+..+++++.+ ++.+++.- .|.++++|++++ .++|++
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~ 173 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTE 173 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHH
Confidence 99999999999999999999999999999999999999999986 57777753 788999998643 589999
Q ss_pred HHHHHHHhhcc---CC---------ceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc--
Q 009601 222 MIAEAMSKVGR---KG---------VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-- 287 (531)
Q Consensus 222 li~~A~~~v~~---~g---------~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-- 287 (531)
++++|+..+.- +| .|-+-+|.+..|| .++.|+.+.....+- .|+..+.|+||+++|+.
T Consensus 174 ~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq-------~m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 174 MVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ-------MMPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh-------ccccccccceeeeEecccc
Confidence 99999998743 22 1334599999999 799999999876653 47888999999999985
Q ss_pred -----------cCCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcc
Q 009601 288 -----------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (531)
Q Consensus 288 -----------i~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~ 345 (531)
+.+++++ ++.++++...|+|+|+++++|||.++.+|+.. +++||+ +.
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~vea------gamAVr-----R~ 314 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RC 314 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHc------chhhhH-----HH
Confidence 3555543 33578999999999999999999999999987 456555 77
Q ss_pred ccchHHHHHHHhCCeEEecCCCccc-cCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHH
Q 009601 346 KSQYLDDIAILTGGTVIRDEVGLAL-DKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (531)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~~l-~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~ 421 (531)
++.+|++|+++||++++++..+++- +.+++..+|+|+.|. +++|+++++.+.+.
T Consensus 315 ~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka---------------------- 372 (545)
T KOG0360|consen 315 KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA---------------------- 372 (545)
T ss_pred HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc----------------------
Confidence 8999999999999999997554433 356788999999986 67999999987643
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHH
Q 009601 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (531)
Q Consensus 422 e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 500 (531)
..|+|++||++++.+||.+|++|||+|++|..++++ +||||||+|.+|+-+|+.++.+..++||
T Consensus 373 --------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~- 437 (545)
T KOG0360|consen 373 --------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQ- 437 (545)
T ss_pred --------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHH-
Confidence 379999999999999999999999999999999999 9999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccccccC
Q 009601 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (531)
Q Consensus 501 ~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~k 531 (531)
+++.-|++||.++|++|+-||+.|+.+++.+
T Consensus 438 laiaefa~all~ipktla~naa~Dstelvt~ 468 (545)
T KOG0360|consen 438 LAIAEFAAALLSIPKTLAVNAAKDSTELVTK 468 (545)
T ss_pred HHHHHHHHHHhcchHHHhhhhcccccccccc
Confidence 7889999999999999999999999998754
|
|
| >KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-60 Score=477.21 Aligned_cols=390 Identities=19% Similarity=0.275 Sum_probs=351.3
Q ss_pred HHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCccchHH
Q 009601 76 KKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSV 155 (531)
Q Consensus 76 ~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGTTtvv 155 (531)
..|+++.++++|+++|||||+.|-||+.++.|.+..||||..||++|++.||+ |+-+.+++.+||+++|||||||+
T Consensus 22 ~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpa----aksmiel~rtqdeevgdgttsvi 97 (527)
T KOG0364|consen 22 LGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGTTSVI 97 (527)
T ss_pred ccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcc----hhhHhhhhhcccccccCCceeee
Confidence 34688999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch---hhHHhhhhcc------CChhhHhHHHHHH
Q 009601 156 VLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS---ELADVAAVSA------GNNYEVGNMIAEA 226 (531)
Q Consensus 156 vLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~---~l~~va~ts~------~~~~~l~~li~~A 226 (531)
+|++|+|.++..++++|+||+.|++.|.+|++.++..+++++.+++.+ .+..+..++. .+.+.++++..+|
T Consensus 98 ~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~a 177 (527)
T KOG0364|consen 98 ILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDA 177 (527)
T ss_pred eehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHH
Confidence 999999999999999999999999999999999999999988877643 6777777664 3577899999999
Q ss_pred HHhhccC-Cc---------eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCC------
Q 009601 227 MSKVGRK-GV---------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITN------ 290 (531)
Q Consensus 227 ~~~v~~~-g~---------I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~------ 290 (531)
+++++.+ |. +.+.+|+.++|| ++++|+.+.+...||. |...++||+|+++||++..
T Consensus 178 vk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hpk-------mrr~IenprivLlD~~LeykkGeSq 249 (527)
T KOG0364|consen 178 VKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQ 249 (527)
T ss_pred HHHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcHH-------HHHHhhcCcEEEecCCccCCCCccc
Confidence 9999875 32 223699999999 8999999999999984 6778999999999998632
Q ss_pred ------------------HHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHH
Q 009601 291 ------------------ARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDD 352 (531)
Q Consensus 291 ------------------~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ 352 (531)
.+++..+++.+.....++|++.+++++.+.++|.++++ .+++++|+.+-.+
T Consensus 250 tnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i-----------T~~rr~rKtDn~r 318 (527)
T KOG0364|consen 250 TNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI-----------TAIRRLRKTDNNR 318 (527)
T ss_pred cceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc-----------hhhhhhhccccch
Confidence 12345677888899999999999999999999998865 4667899999999
Q ss_pred HHHHhCCeEEecCCCccccCCCCCCCce-eeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009601 353 IAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428 (531)
Q Consensus 353 ia~~tGa~ii~~~~~~~l~~~~~~~lG~-~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~e 428 (531)
|+++||+++++ +.+++.+.+.|+ |+-+++ ++++|+||..|.+|
T Consensus 319 ia~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~p---------------------------- 365 (527)
T KOG0364|consen 319 IARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEP---------------------------- 365 (527)
T ss_pred hhhhcCceecc-----ChhhCchhccCcccceeeeeccCchhhhhhhhcCCC----------------------------
Confidence 99999999999 689999999996 777775 68899999999886
Q ss_pred HHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHH
Q 009601 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVK 507 (531)
Q Consensus 429 Rl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a 507 (531)
+.|||++||+|..+++|.+|.+.||+.++|+.+-++ ++||||++||.+|+.|.+.+....+.+| -.+.+++
T Consensus 366 -------kaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVek-wPY~Ava 437 (527)
T KOG0364|consen 366 -------KACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEK-WPYGAVA 437 (527)
T ss_pred -------cceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhc-cchhhhh
Confidence 589999999999999999999999999999999999 9999999999999999998777888777 7899999
Q ss_pred HHHHHHHHHHHHHcCCCccccc
Q 009601 508 RALCYPLKLIAKNAGVNGSVVS 529 (531)
Q Consensus 508 ~AL~~ip~~L~~NaG~d~~~v~ 529 (531)
.||+.+||+|++|+|.|+..++
T Consensus 438 ~AlEviPrtliqncGan~Ir~l 459 (527)
T KOG0364|consen 438 GALEVIPRTLIQNCGANPIRAL 459 (527)
T ss_pred cCceeccHHHHhhcCccHHHHH
Confidence 9999999999999999987654
|
|
| >KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-56 Score=449.35 Aligned_cols=392 Identities=23% Similarity=0.372 Sum_probs=343.8
Q ss_pred HHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCccch
Q 009601 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTT 153 (531)
Q Consensus 74 a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGTTt 153 (531)
+...|+.+..-+.+.+++.+||+|..||++++.|++++|+||.+.+++|+++||. |-++..++..||+..||||||
T Consensus 18 al~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGttS 93 (520)
T KOG0359|consen 18 ALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGTTS 93 (520)
T ss_pred ceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCcce
Confidence 5556778888899999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCchhhHHhhhhccCC------hhhHhHHHHHHH
Q 009601 154 SVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGN------NYEVGNMIAEAM 227 (531)
Q Consensus 154 vvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~------~~~l~~li~~A~ 227 (531)
+|+|.++|+++|..++..|+||..|..||+.|.+.++++|+..+.+++.+.|..+++|+++. -+.+++++++|+
T Consensus 94 ~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aV 173 (520)
T KOG0359|consen 94 VVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVDSV 173 (520)
T ss_pred EEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999887777765899999999875 377889999999
Q ss_pred Hhhcc-CCceE-----e--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC----------
Q 009601 228 SKVGR-KGVVT-----L--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT---------- 289 (531)
Q Consensus 228 ~~v~~-~g~I~-----v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~---------- 289 (531)
..+.+ ++.|. + -.-.+..|+ .+++|+++|+|-.||- |+..++|++||+++..+.
T Consensus 174 l~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~Einsgf 245 (520)
T KOG0359|consen 174 LCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINSGF 245 (520)
T ss_pred eeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccccccccch
Confidence 98873 33221 1 244566677 7999999999999984 888999999999997643
Q ss_pred ---CHHH-----------HHHHHHHHHhcCC---CEE-EEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHH
Q 009601 290 ---NARD-----------LINVLEDAIRGAY---PIL-IIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLD 351 (531)
Q Consensus 290 ---~~~~-----------l~~~le~i~~~g~---~lv-I~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~ 351 (531)
+++| +.+.+.++++.+. .+| |.+++||+..|+.|.+++ |+ +.++.++..||
T Consensus 246 fYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~g------Il-----aLRRAKRRNmE 314 (520)
T KOG0359|consen 246 FYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSG------IL-----ALRRAKRRNME 314 (520)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcc------hH-----HHHHHhhhhHH
Confidence 2222 1223455555443 344 557899999999998874 34 45577899999
Q ss_pred HHHHHhCCeEEecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009601 352 DIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428 (531)
Q Consensus 352 ~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~e 428 (531)
|+..+|||..+. ++++++|+.||+|+.|+ +++++|||+++|.+|
T Consensus 315 RL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p---------------------------- 361 (520)
T KOG0359|consen 315 RLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP---------------------------- 361 (520)
T ss_pred HHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC----------------------------
Confidence 999999999998 69999999999999997 479999999999986
Q ss_pred HHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHH
Q 009601 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVK 507 (531)
Q Consensus 429 Rl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a 507 (531)
+.|||+++||+.+.+-++|++++|++++++++++++ ++||+|++|.+++.+|+...++.+++.+ +|+++|+
T Consensus 362 -------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~-~g~~afa 433 (520)
T KOG0359|consen 362 -------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAY-LGVKAFA 433 (520)
T ss_pred -------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhh-hhHHHHH
Confidence 589999999999999999999999999999999999 9999999999999999988888888887 8999999
Q ss_pred HHHHHHHHHHHHHcCCCccccc
Q 009601 508 RALCYPLKLIAKNAGVNGSVVS 529 (531)
Q Consensus 508 ~AL~~ip~~L~~NaG~d~~~v~ 529 (531)
+||..+|++|++|+|+|+.+.+
T Consensus 434 ~all~ipk~La~nsg~D~qe~l 455 (520)
T KOG0359|consen 434 NALLVIPKTLAKNSGLDEQETL 455 (520)
T ss_pred hhhhhhhHHHHHhcCCchHHHH
Confidence 9999999999999999998765
|
|
| >KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=424.95 Aligned_cols=314 Identities=25% Similarity=0.330 Sum_probs=290.5
Q ss_pred cccccccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHH
Q 009601 58 PKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVR 137 (531)
Q Consensus 58 ~~~~~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~ 137 (531)
+|-.-.|...|| -++.++++-+..++++++++|+||+|++|++..+.|++.+|||| .|+. ++++.
T Consensus 15 LrDQd~~~Ri~G--~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I----akLmv 79 (400)
T KOG0357|consen 15 LRDQERKDRLFG--LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI----AKLIV 79 (400)
T ss_pred eeeccCCchhhH--HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH----HHHHH
Confidence 333335666777 89999999999999999999999999999999999999999999 6787 99999
Q ss_pred HHHhhcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCchhhHHhhhhccCChh
Q 009601 138 QAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNY 217 (531)
Q Consensus 138 ~~a~~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~~~ 217 (531)
..+..|+.++|||||.+++|++.+++++.+++..|+||..|..||+.+.+.++++|++.+.+++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------- 143 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------- 143 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------
Confidence 9999999999999999999999999999999999999999999999999999999988765532
Q ss_pred hHhHHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHH
Q 009601 218 EVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINV 297 (531)
Q Consensus 218 ~l~~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~ 297 (531)
+.++
T Consensus 144 ----------------------------------------------------------------------------f~em 147 (400)
T KOG0357|consen 144 ----------------------------------------------------------------------------FEEM 147 (400)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 5567
Q ss_pred HHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCC
Q 009601 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEV 377 (531)
Q Consensus 298 le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~ 377 (531)
++.+++.|.+++||+|++||||.++|..|++ |..+|+...++|-||++|||+++. ++++++++.
T Consensus 148 i~~vK~~ga~l~icqwgfddeanhll~~n~l-----------pavrwVGGpEiEliAiaT~grIVp-----rF~eL~~~k 211 (400)
T KOG0357|consen 148 IQQIKETGANLAICQWGFDDEANHLLLQNNL-----------PAVRWVGGPEIELIAIATGGRIVP-----RFSELTAEK 211 (400)
T ss_pred HHHHHhhCCcEEEEecccCchhhhHHhhcCC-----------CceeecCCcceEEEEeecCCeeec-----cHhhhCHhh
Confidence 8899999999999999999999999999976 777788899999999999999999 799999999
Q ss_pred CceeeEEEE-----eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Q 009601 378 LGNASKVVL-----TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKE 452 (531)
Q Consensus 378 lG~~~~v~i-----~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E 452 (531)
||+++.|.. ++|++.+++.|++. +..||.+||++..+++|
T Consensus 212 LG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifvRg~Nkmii~E 256 (400)
T KOG0357|consen 212 LGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFVRGGNKMIIEE 256 (400)
T ss_pred ccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEEecCcceeHHH
Confidence 999998863 38899999999874 58899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 453 KKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 453 ~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
.||++|||||++|+.++|. +|+|||++|+.||-++.+.+.++++.|| |++.+|++||++||..||+|+|++|++.+.
T Consensus 257 akrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eq-ya~rafa~ale~ipmalaensgl~pi~~ls 334 (400)
T KOG0357|consen 257 AKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQ-YAFRAFADALESIPMALAENSGLDPIETLS 334 (400)
T ss_pred HHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHH-HHHHHHHHHHhhcchhhhhccCCCchhhhh
Confidence 9999999999999999998 9999999999999999999999999999 799999999999999999999999987653
|
|
| >cd03333 chaperonin_like chaperonin_like superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=236.42 Aligned_cols=191 Identities=37% Similarity=0.482 Sum_probs=168.3
Q ss_pred hhHHhhhhccC-----ChhhHhHHHHHHHHhhcc------CCceE--eecCCCccceeEEEeeeEEeecccCCccccCcc
Q 009601 204 ELADVAAVSAG-----NNYEVGNMIAEAMSKVGR------KGVVT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSE 270 (531)
Q Consensus 204 ~l~~va~ts~~-----~~~~l~~li~~A~~~v~~------~g~I~--v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~ 270 (531)
.|.++|+|+++ +++.+++++++|+..+++ .+.|. ..+|+++.|| ++++|++|+++|.+|+
T Consensus 3 ~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~------ 75 (209)
T cd03333 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY------ 75 (209)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC------
Confidence 47889999988 789999999999999987 34444 4699999999 8999999999999986
Q ss_pred cCeeeccceeEeeeccccCCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchH
Q 009601 271 KMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL 350 (531)
Q Consensus 271 ~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L 350 (531)
|+..++||+|++++++|+. +|+++++|++.++++|..+ +|+||+. +++++|
T Consensus 76 -m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~l 126 (209)
T cd03333 76 -MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKEDL 126 (209)
T ss_pred -CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHHH
Confidence 5778999999999999887 8888888999999999875 5788874 568999
Q ss_pred HHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009601 351 DDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427 (531)
Q Consensus 351 ~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~ 427 (531)
+|||++|||++++ ++++++++.||+|+++++. ++.++++.+|..
T Consensus 127 ~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~---------------------------- 173 (209)
T cd03333 127 ERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG---------------------------- 173 (209)
T ss_pred HHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCC----------------------------
Confidence 9999999999999 5888889999999999874 456888888764
Q ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 009601 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470 (531)
Q Consensus 428 eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~ 470 (531)
+..|||+|||+|+.+++|.||+++||++++++++++
T Consensus 174 -------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 174 -------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 368999999999999999999999999999999874
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. |
| >cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=232.66 Aligned_cols=199 Identities=19% Similarity=0.168 Sum_probs=168.2
Q ss_pred ChhhHhHHHHHHHHhhccC----------Cce--EeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009601 215 NNYEVGNMIAEAMSKVGRK----------GVV--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (531)
Q Consensus 215 ~~~~l~~li~~A~~~v~~~----------g~I--~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIl 282 (531)
+.++|++++++|+..+.++ ..| .+.+|++++|| ++++|++|++++.++ .|+..++||+|+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 4789999999999998632 123 34699999999 999999999997775 478889999999
Q ss_pred eeccccCCH------H-----------HHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcc
Q 009601 283 LVDKKITNA------R-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (531)
Q Consensus 283 l~d~~i~~~------~-----------~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~ 345 (531)
+++++|... . .+.++++++++.|+++|+++++|++.++++|.++ +|++|+ ++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~-----~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVL-----NV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEE-----ec
Confidence 999987432 1 2456789999999999999999999999999886 457776 55
Q ss_pred ccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eC-----ceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009601 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TK-----DTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (531)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~-----~~~~~~~g~~~~~~i~~ri~~l~~~l~~~ 417 (531)
++.+|++||++|||+++++ -.+.++++.||+|+.|++ ++ +++++|.+|..+
T Consensus 160 ~~~dl~rIa~~tGa~ii~~----i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~----------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIISS----MDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE----------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEecC----hhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-----------------
Confidence 6899999999999999983 034788899999999985 33 589999998753
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009601 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 471 (531)
Q Consensus 418 ~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g 471 (531)
..+||+|||+|++.++|.||+++||+++++++..++
T Consensus 219 ------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 ------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred ------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 589999999999999999999999999999998876
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. |
| >KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=132.44 Aligned_cols=208 Identities=18% Similarity=0.210 Sum_probs=165.7
Q ss_pred ChhhHhHHHHHHHHhhccC----------Cc--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009601 215 NNYEVGNMIAEAMSKVGRK----------GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (531)
Q Consensus 215 ~~~~l~~li~~A~~~v~~~----------g~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIl 282 (531)
|.+.+..|+.+|...+.++ +. |+.+.||+..|| +++.|+++.+...+ +.|..++++|+|+
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~-------k~M~~~~e~pril 404 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAH-------KRMATKYENPRIL 404 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhh-------hhhhhhccCCceE
Confidence 4577889999999988775 12 445799999999 99999999998665 4577889999999
Q ss_pred eeccccC---------CHH--------HHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCcc
Q 009601 283 LVDKKIT---------NAR--------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (531)
Q Consensus 283 l~d~~i~---------~~~--------~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~ 345 (531)
++.+++. +.+ .+...+.++.....+++++.++|++.|..+|... |+.-+. ++
T Consensus 405 ll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I~lvl--------nv 473 (1598)
T KOG0230|consen 405 LLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GISLVL--------NV 473 (1598)
T ss_pred EEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---CeEEEE--------ec
Confidence 9988642 222 2345677888889999999999999999988653 433333 66
Q ss_pred ccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe--------CceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009601 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT--------KDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (531)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~--------~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~ 417 (531)
++..|+||+++||+.|+. +++.++...||+|..+++. .+.++||+||..+
T Consensus 474 K~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~----------------- 531 (1598)
T KOG0230|consen 474 KRSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP----------------- 531 (1598)
T ss_pred cHHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC-----------------
Confidence 789999999999999998 5888999999999999763 2356788998764
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHH-HHcCeeccCchhHh
Q 009601 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA-VEEGIVVGGGCTLL 481 (531)
Q Consensus 418 ~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a-~~~gvVpGGGa~el 481 (531)
.-|||++||.+..++++.|+-++-++-++-+. ++.-++.--|+...
T Consensus 532 ------------------lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 532 ------------------LGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred ------------------CCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 35799999999999999999999999888554 55557777777544
|
|
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00029 Score=77.73 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCC-EEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchH-HHHHHHhCCeEEecCCCcccc
Q 009601 294 LINVLEDAIRGAYP-ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL-DDIAILTGGTVIRDEVGLALD 371 (531)
Q Consensus 294 l~~~le~i~~~g~~-lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L-~~ia~~tGa~ii~~~~~~~l~ 371 (531)
+..+++.+.+.|.+ +++++++|+|.++++|..+. |.+ .+++.++++ ++|+.+|||++++ .++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~------Ilt-----~~~v~~~dl~~~l~~~~ga~~v~-----~~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIA------ILT-----GRRVKKEDLGERLAKLGGAKIVS-----VLK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhc------cee-----cceecchhhHHHHHHccCceEEe-----ecc
Confidence 45567888899999 88999999999999998763 444 446668888 7999999999998 588
Q ss_pred CCCCCCCce--eeEEEE---eCceEEEEcCC
Q 009601 372 KVGKEVLGN--ASKVVL---TKDTTTIVGDG 397 (531)
Q Consensus 372 ~~~~~~lG~--~~~v~i---~~~~~~~~~g~ 397 (531)
++++..+|. |+.|+. ++++++++.++
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~ 353 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQER 353 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhh
Confidence 999999999 999974 34555555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 531 | ||||
| 1we3_A | 543 | Crystal Structure Of The Chaperonin Complex Cpn60CP | 1e-133 | ||
| 2eu1_A | 548 | Crystal Structure Of The Chaperonin Groel-E461k Len | 1e-132 | ||
| 1aon_A | 547 | Crystal Structure Of The Asymmetric Chaperonin Comp | 1e-132 | ||
| 1pcq_A | 524 | Crystal Structure Of Groel-Groes Length = 524 | 1e-132 | ||
| 3c9v_A | 526 | C7 Symmetrized Structure Of Unliganded Groel At 4.7 | 1e-132 | ||
| 2yey_A | 524 | Crystal Structure Of The Allosteric-Defective Chape | 1e-132 | ||
| 1sx3_A | 525 | Groel14-(Atpgammas)14 Length = 525 | 1e-132 | ||
| 1ss8_A | 524 | Groel Length = 524 | 1e-132 | ||
| 1gr5_A | 547 | Solution Structure Of Apo Groel By Cryo-Electron Mi | 1e-132 | ||
| 4aaq_A | 548 | Atp-Triggered Molecular Mechanics Of The Chaperonin | 1e-131 | ||
| 1kp8_A | 547 | Structural Basis For Groel-Assisted Protein Folding | 1e-131 | ||
| 1j4z_A | 547 | Structural And Mechanistic Basis For Allostery In T | 1e-131 | ||
| 1grl_A | 548 | The Crystal Structure Of The Bacterial Chaperonin G | 1e-131 | ||
| 1oel_A | 547 | Conformational Variability In The Refined Structure | 1e-131 | ||
| 3cau_A | 526 | D7 Symmetrized Structure Of Unliganded Groel At 4.2 | 1e-131 | ||
| 1iok_A | 545 | Crystal Structure Of Chaperonin-60 From Paracoccus | 1e-129 | ||
| 3rtk_A | 546 | Crystal Structure Of Cpn60.2 From Mycobacterium Tub | 1e-129 | ||
| 1sjp_A | 504 | Mycobacterium Tuberculosis Chaperonin60.2 Length = | 1e-116 | ||
| 1la1_A | 192 | Gro-El Fragment (Apical Domain) Comprising Residues | 4e-59 | ||
| 1fy9_A | 193 | Crystal Structure Of The Hexa-Substituted Mutant Of | 2e-57 | ||
| 1kid_A | 203 | Groel (Hsp60 Class) Fragment (Apical Domain) Compri | 5e-57 | ||
| 1fya_A | 193 | Crystal Structure Of The Hexa-Substituted Mutant Of | 6e-57 | ||
| 3osx_A | 201 | Crystal Structure Of Apical Domain Of Insecticidal | 2e-56 | ||
| 1jon_A | 155 | Groel (Hsp60 Class) Fragment Comprising Residues 19 | 2e-44 | ||
| 1dk7_A | 146 | Crystal Structure Of An Isolated Apical Domain Of G | 9e-44 | ||
| 3m6c_A | 194 | Crystal Structure Of Mycobacterium Tuberculosis Gro | 4e-43 | ||
| 1srv_A | 145 | Thermus Thermophilus Groel (Hsp60 Class) Fragment ( | 1e-41 | ||
| 3p9d_E | 562 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-12 | ||
| 3iyg_Z | 517 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 6e-11 | ||
| 1a6d_A | 545 | Thermosome From T. Acidophilum Length = 545 | 2e-10 | ||
| 1a6d_B | 543 | Thermosome From T. Acidophilum Length = 543 | 3e-10 | ||
| 3iyg_D | 518 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 4e-10 | ||
| 1q3r_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 7e-10 | ||
| 3izh_A | 513 | Mm-Cpn D386a With Atp Length = 513 | 1e-09 | ||
| 3izi_A | 513 | Mm-Cpn Rls With Atp Length = 513 | 1e-09 | ||
| 3rus_A | 543 | Crystal Structure Of Cpn-Rls In Complex With Adp Fr | 1e-09 | ||
| 3los_A | 543 | Atomic Model Of Mm-Cpn In The Closed State Length = | 1e-09 | ||
| 3izk_A | 491 | Mm-Cpn Rls Deltalid With Atp Length = 491 | 1e-09 | ||
| 3izn_A | 491 | Mm-Cpn Deltalid With Atp Length = 491 | 1e-09 | ||
| 3j02_A | 491 | Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun | 1e-09 | ||
| 3iyf_A | 521 | Atomic Model Of The Lidless Mm-Cpn In The Open Stat | 1e-09 | ||
| 3p9d_D | 528 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-09 | ||
| 1q2v_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 5e-09 | ||
| 1q3s_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 3e-08 | ||
| 3iyg_E | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-08 | ||
| 3ko1_A | 553 | Cystal Structure Of Thermosome From Acidianus Tengc | 1e-07 | ||
| 3iyg_B | 513 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 1e-07 | ||
| 3p9d_F | 546 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-07 | ||
| 3p9d_C | 590 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-07 | ||
| 3iyg_G | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 6e-07 | ||
| 3p9d_B | 527 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 9e-07 | ||
| 3iyg_H | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-06 | ||
| 3p9d_H | 568 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 6e-06 | ||
| 3p9d_G | 550 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 1e-05 | ||
| 3iyg_A | 529 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 1e-05 | ||
| 3aq1_B | 500 | Open State Monomer Of A Group Ii Chaperonin From Me | 3e-04 | ||
| 3p9d_A | 559 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 3e-04 |
| >pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 | Back alignment and structure |
|
| >pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 | Back alignment and structure |
|
| >pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 | Back alignment and structure |
|
| >pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 | Back alignment and structure |
|
| >pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 | Back alignment and structure |
|
| >pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 | Back alignment and structure |
|
| >pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 | Back alignment and structure |
|
| >pdb|1SS8|A Chain A, Groel Length = 524 | Back alignment and structure |
|
| >pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 | Back alignment and structure |
|
| >pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 | Back alignment and structure |
|
| >pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 | Back alignment and structure |
|
| >pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 | Back alignment and structure |
|
| >pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 | Back alignment and structure |
|
| >pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 | Back alignment and structure |
|
| >pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 | Back alignment and structure |
|
| >pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 | Back alignment and structure |
|
| >pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 | Back alignment and structure |
|
| >pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 | Back alignment and structure |
|
| >pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 | Back alignment and structure |
|
| >pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 | Back alignment and structure |
|
| >pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 | Back alignment and structure |
|
| >pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 | Back alignment and structure |
|
| >pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 | Back alignment and structure |
|
| >pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 | Back alignment and structure |
|
| >pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 | Back alignment and structure |
|
| >pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 | Back alignment and structure |
|
| >pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 | Back alignment and structure |
|
| >pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 | Back alignment and structure |
|
| >pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 | Back alignment and structure |
|
| >pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 | Back alignment and structure |
|
| >pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 | Back alignment and structure |
|
| >pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 | Back alignment and structure |
|
| >pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 | Back alignment and structure |
|
| >pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 | Back alignment and structure |
|
| >pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 | Back alignment and structure |
|
| >pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 | Back alignment and structure |
|
| >pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 | Back alignment and structure |
|
| >pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 | Back alignment and structure |
|
| >pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 | Back alignment and structure |
|
| >pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 | Back alignment and structure |
|
| >pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 | Back alignment and structure |
|
| >pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 | Back alignment and structure |
|
| >pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 | Back alignment and structure |
|
| >pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 | Back alignment and structure |
|
| >pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 | Back alignment and structure |
|
| >pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 | Back alignment and structure |
|
| >pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 | Back alignment and structure |
|
| >pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 | Back alignment and structure |
|
| >pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 | Back alignment and structure |
|
| >pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 | Back alignment and structure |
|---|
Score = 687 bits (1776), Expect = 0.0
Identities = 261/471 (55%), Positives = 339/471 (71%), Gaps = 5/471 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F D A K+ GVN LAD V VTLGPKGRNVVL+ +GAP I DGV+VA+E
Sbjct: 1 AAKDVKFGND--AGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVARE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RG
Sbjct: 59 IELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+K V ELK +S DS +A V +SA ++ VG +IAEAM KVG++GV+T+E+
Sbjct: 119 IDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVED 178
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
G ++ L VVEGMQFDRGY+SPYF+ E AVE E+ +LL DKKI+N R+++ VLE
Sbjct: 179 GTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEA 238
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
+ P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+ L DIA LTGGT
Sbjct: 239 VAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGT 298
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +E+G+ L+K E LG A +VV+ KDTTTI+ + A+ RVAQIR IE A D
Sbjct: 299 VISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSD 358
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AAVEEG+V GGG L
Sbjct: 359 YDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVAL 418
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
+R++SK+ ++ N ++ VG + RA+ PL+ I N G SVV+
Sbjct: 419 IRVASKLADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANT 467
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 | Back alignment and structure |
|---|
Score = 684 bits (1767), Expect = 0.0
Identities = 263/470 (55%), Positives = 349/470 (74%), Gaps = 5/470 (1%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK L F++ A + L+ GVN +A+ V VTLGP+GRNVVLE K+G+P I DGVTVAKEV
Sbjct: 2 AKILVFDEA--ARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEV 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELED +ENIGA+L+++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGI
Sbjct: 60 ELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EK +A V ++K ++ VED + +VA +SA N+ EVG +IA+AM KVG++G++T+EE
Sbjct: 120 EKAVEAAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEES 178
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
KS E L VEG QFD+GYISPYFVT+ E M E+ +L+V+KK++N R+L+ +LE
Sbjct: 179 KSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQV 238
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
+ P+LIIAED+E EALATLVVNKLRG L +AA+KAPGFG+R+ + L DIA +TGGTV
Sbjct: 239 AQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTV 298
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I +E+G L+ +LG A +V +TKD TTIVG ++ + R+ I+ +E + +Y
Sbjct: 299 ISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEY 358
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
REKL ER+AKL+GGVAVI+VGA TETELKEKK R EDALNAT+AAVEEGIV GGG TLL
Sbjct: 359 AREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLL 418
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
R S V+ + + L +E GA IV+RAL P + IA+NAG GSV+ ++
Sbjct: 419 RAISAVEELIKKL-EGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQ 467
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 | Back alignment and structure |
|---|
Score = 683 bits (1766), Expect = 0.0
Identities = 251/471 (53%), Positives = 344/471 (73%), Gaps = 5/471 (1%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++ FN D A ++ GVN LAD V VTLGPKGRNVV++ +GAP+I DGV+VAKE
Sbjct: 2 AAKEVKFNSD--ARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKE 59
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+EL D EN+GA++VR+ A++TND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 60 IELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRG 119
Query: 182 IEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240
I+ + +V +K ++ V DS E+A V +SA +G IAEAM +VG +GV+T+EE
Sbjct: 120 IDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEE 179
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300
K E + VVEGMQFDRGY+SPYFVT+++KM E E+ +LL +KK+++ + ++ +LE
Sbjct: 180 NKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLES 239
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360
I+ P+LI+AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+ L DIAILTGG
Sbjct: 240 VIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQ 299
Query: 361 VIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQD 420
VI +++G+ L+ V ++LG A KV + KD TTIV + + RV+QIR IE D
Sbjct: 300 VISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSD 359
Query: 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480
Y+REKL ER+AKL+GGVAVI+VG TE E+KE+K RV+DALNAT+AAV+EGIVVGGG L
Sbjct: 360 YDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVAL 419
Query: 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
++ + ++ + N ++ G I++RAL P++ IA+NAGV+G+VV+ K
Sbjct: 420 VQGAKVLEGLSG--ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGK 468
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 | Back alignment and structure |
|---|
Score = 680 bits (1757), Expect = 0.0
Identities = 262/470 (55%), Positives = 343/470 (72%), Gaps = 7/470 (1%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK + ++++ A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+
Sbjct: 2 AKTIAYDEE--ARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEI 59
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELEDP E IGA+LV++ A KT+D+AGDGTTT+ VLAQ L+ EG++ VAAGANP+ + RGI
Sbjct: 60 ELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGI 119
Query: 183 EKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEG 241
EK + + L + +KEVE ++A AA+SAG+ +G++IAEAM KVG +GV+T+EE
Sbjct: 120 EKAVEKVTETLLKGAKEVETKEQIAATAAISAGDQ-SIGDLIAEAMDKVGNEGVITVEES 178
Query: 242 KSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301
+ L + EGM+FD+GYIS YFVTD E+ E+ +LLV K++ +DL+ +LE
Sbjct: 179 NTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKV 238
Query: 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 361
I P+LIIAED+E EAL+TLVVNK+RG K A+KAPGFG+R+ L D+AILTGG V
Sbjct: 239 IGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQV 298
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I +EVGL L+ +LG A KVV+TKD TTIV DA++ RVAQIR IEN++ DY
Sbjct: 299 ISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDY 358
Query: 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLL 481
+REKL ER+AKL+GGVAVI+ GA TE ELKE+K R+EDA+ KAAVEEGIV GGG TLL
Sbjct: 359 DREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLL 418
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531
+ + +D +K L+ D E GA+IVK AL PLK IA N+G+ VV+EK
Sbjct: 419 QAAPTLDELK--LEGD-EATGANIVKVALEAPLKQIAFNSGLEPGVVAEK 465
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 6e-96
Identities = 108/197 (54%), Positives = 143/197 (72%)
Query: 243 SAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302
S + + EGMQFDRGY+SPYF+ E +VE EN +LLVDKKI+N R+L+ VLE
Sbjct: 4 SHHHHHHGSEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVA 63
Query: 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVI 362
+ + P++IIAED+E EALATLVVN +RG +K+A++KAPGFG+R+ L DIA LT GTVI
Sbjct: 64 KASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVI 123
Query: 363 RDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422
+E+GL L+K E LG A +VV+ KDTTTI+ + A++ RV QIR IE + DY+
Sbjct: 124 SEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDYD 183
Query: 423 REKLNERIAKLSGGVAV 439
REKL ER+AKL+GGV +
Sbjct: 184 REKLQERVAKLAGGVKL 200
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 6e-95
Identities = 92/193 (47%), Positives = 133/193 (68%)
Query: 248 LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYP 307
L EG+ FD+G++S YFVTD + E+ +LL KI++ DL+ +LE P
Sbjct: 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKP 61
Query: 308 ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367
+LI+AED+E EALATLVVN +R LK A+K P FG+R+ +L+D+A++TGG V+ + G
Sbjct: 62 LLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAG 121
Query: 368 LALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427
+ L +VG EVLG+A +VV++KD T IV G T +AV+ R +R I+ ++ D++REKL
Sbjct: 122 MVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKLG 181
Query: 428 ERIAKLSGGVAVI 440
ER+AKL+GGVAVI
Sbjct: 182 ERLAKLAGGVAVI 194
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 3e-69
Identities = 81/143 (56%), Positives = 107/143 (74%)
Query: 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIA 312
G QFD+GYISPYFVT+ E M E+ +L+V+KK++N R+L+ +LE + P+LIIA
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 313 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDK 372
ED+E EALATLVVNKLRG L +AA+KAPGFG+R+ + L DIA +TGGTVI +E+G L+
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 373 VGKEVLGNASKVVLTKDTTTIVG 395
+LG A +V +TKD TTIVG
Sbjct: 121 ATLSMLGRAERVRITKDETTIVG 143
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 89/523 (17%), Positives = 191/523 (36%), Gaps = 117/523 (22%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD++ LGPK +L G + NDG + +E+++ P AK + + + +
Sbjct: 31 VADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPA----AKSMLELSRTQD 86
Query: 145 DLAGDGTTTSVVLAQGLIAEGV-KVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-- 201
+ GDGTTT ++LA ++A+ ++ +PV+I + ++K + +KQ+SK V+
Sbjct: 87 EEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVE 146
Query: 202 -DSELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENML------ 248
D+ + + + ++ + +A+ V + T+E + E +
Sbjct: 147 NDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRV 206
Query: 249 -----------YVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK----- 287
V++G+ ++ + P KM+ EN +++L+D KK
Sbjct: 207 EKIPGGDVLDSRVLKGVLLNKDVVHP-------KMSRHIENPRVVLLDCPLEYKKGESQT 259
Query: 288 ---ITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA----- 339
I D + I IE+E + + +I A++
Sbjct: 260 NIEIEKEEDW-----NRIL----------QIEEEQVQLMC-------EQILAVRPTLVIT 297
Query: 340 -PGFGERKSQYLDD----------------IAILTGGTVI-------RDEVGLALDKVGK 375
G + YL IA +TG T++ +VG
Sbjct: 298 EKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKV 357
Query: 376 EVLGNASKVVLTK----DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIA 431
E++G+ L + + + KR + + +A +++ + +
Sbjct: 358 EMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALG 417
Query: 432 KLSGGVAVIQVGAQTETELKEKKLR---------VEDALNATKAAVEEG-IVVGGGCTLL 481
+ T + + ++DA+ + + + GGG T +
Sbjct: 418 SGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEM 477
Query: 482 RLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVN 524
+S K+ + L+ ++ V A+ + + +NAG +
Sbjct: 478 AVSVKLAEKAKQLEG-IQQWPYQAVADAMECIPRTLIQNAGGD 519
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 6e-16
Identities = 76/456 (16%), Positives = 152/456 (33%), Gaps = 118/456 (25%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+ + + TLGP G ++++ + I NDG T+ K +++ P AK + + +
Sbjct: 36 VQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPA----AKTLVDISRAQD 91
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
GDGTT+ +LA L+ E + G + LI +G K V ++ +++ ++ +
Sbjct: 92 AEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEK 151
Query: 205 LAD------VAA------VSAGNNYEVGNMIAEAMSKVGRKGV------VTLEEGKSAEN 246
+ A + N M +A+ + R + + G + E
Sbjct: 152 SSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEE 211
Query: 247 MLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD------KKITNARDLINVLED 300
+ G+ F + + F E+ ++ N K+L ++ + NA + +ED
Sbjct: 212 S-LFINGVAFKKTFSYAGF----EQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVED 266
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD-- 352
D E + + + ++ A G+ +Q+ D
Sbjct: 267 --------YQAIVDAEWQLIFEKLR-------QVEETGANIVLSKLPIGDLATQFFADRN 311
Query: 353 --------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGS 398
+ GG++ + E LG +
Sbjct: 312 IFCAGRVSADDMNRVIQAVGGSIQST-----TSDIKPEHLGTCALF-------------- 352
Query: 399 TQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELKEK 453
E + +ER G ++ G E + E
Sbjct: 353 ----------------------EEMQIGSERYNLFQGCPQAKTCTLLLRGG-AEQVIAEV 389
Query: 454 KLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
+ + DA+ K A++ IV GGG T + +S +
Sbjct: 390 ERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLR 425
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 2e-15
Identities = 75/468 (16%), Positives = 144/468 (30%), Gaps = 134/468 (28%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
LA GP G N ++ + + ND T+ +E+E++ P AK++ A+
Sbjct: 23 LAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPA----AKMIVMASHMQE 78
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS- 203
GDGT +V A L+ +++ G + + G E K L + +
Sbjct: 79 QEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNL 138
Query: 204 ----ELADVAAVS-----AGNNYEVGNMIAEAMSKVGRK-GVVTLE-------EGKSAEN 246
E++ + S GN + +IA+A + G ++ G +
Sbjct: 139 RDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHS 198
Query: 247 MLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITNARD 293
V+ GM F + ++E ++ K+ + I +A +
Sbjct: 199 S-SVLHGMVFKK---------ETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEE 248
Query: 294 LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKS 347
L+N E+ + V IA A +
Sbjct: 249 LMNFS---------------KGEENLMDAQV-------KAIADTGANVVVTGGRVADMAL 286
Query: 348 QYLDD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTK--- 388
Y + + G T + L+ E +G+ V L++
Sbjct: 287 HYANKYNIMLVRLNSKWDLRRLCKTVGATALPR-----LNPPVLEEMGHCDSVYLSEVGD 341
Query: 389 -DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 447
+ T++ L G T+
Sbjct: 342 TQVVVFKHEKEDGAIS--------TIV------------------LRGS---------TD 366
Query: 448 TELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
+ + + V+D +N K + +V GGG T + L+ ++ + ET
Sbjct: 367 NLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETC 414
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 5e-15
Identities = 74/391 (18%), Positives = 142/391 (36%), Gaps = 106/391 (27%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
L + ++GP GRN ++ + G I ND T+ +E+++ P K++ A +
Sbjct: 38 LHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPA----VKVLVMATEQQK 93
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMS----KEV 200
GDGT ++LA L+ K+++ G + V I +G K + EL +M +
Sbjct: 94 IDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDK 153
Query: 201 EDSE-LADVAAVS-----AGNNYEVGNMIAEAMSKV-------GRKGVVTLE-------E 240
D L + G+ + +++EA+S V G ++
Sbjct: 154 NDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIM 213
Query: 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK-------- 287
G S N V++GM F+R K E + K+ +
Sbjct: 214 GGSLSNS-TVIKGMVFNREPEG------HVKSLSEDKKHKVAVFTCPLDIANTETKGTVL 266
Query: 288 ITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PG 341
+ NA+++++ E++ + ++ +IA + G
Sbjct: 267 LHNAQEMLDFS---------------KGEEKQIDAMM-------KEIADMGVECIVAGAG 304
Query: 342 FGERKSQYLDD----------------IAILTGGTVI-------RDEVGLALDKVGKEVL 378
GE YL+ + + G T + +E+GL + V +
Sbjct: 305 VGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLV-ETVKTMEI 363
Query: 379 GNASKVVLTKD------TTTIVGDGSTQDAV 403
G V ++ T+TI+ G+TQ+ +
Sbjct: 364 GGDRVTVFKQEQGEISRTSTIILRGATQNNL 394
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 5e-15
Identities = 93/462 (20%), Positives = 169/462 (36%), Gaps = 121/462 (26%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD V TLGPKG + +L G I NDG T+ KE+++E P AK++ + + +
Sbjct: 34 IADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT----AKMIVEVSKAQD 89
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
GDGTTT+VVL+ L+ + ++ G +P +I+ G + +++++ D
Sbjct: 90 TAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDA 149
Query: 205 -LADVAA------VSAGNNYEVGNMIAEAMSKV----GRKGVVTLE-------EGKSAEN 246
L +A + +N + +++ +A++ V K +V G S +
Sbjct: 150 TLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVND 209
Query: 247 MLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINVLED 300
+ G+ D+ + KM +N K+ L+D KK A+ I+
Sbjct: 210 T-QFISGIVIDKEKVHS-------KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSK 261
Query: 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD-- 352
+ + E +V KI A G + YL
Sbjct: 262 --------IQDFLNQETNTFKQMVE-------KIKKSGANVVLCQKGIDDVAQHYLAKEG 306
Query: 353 --------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGS 398
+A TG ++ D LD + VLG A V
Sbjct: 307 IYAVRRVKKSDMEKLAKATGAKIVTD-----LDDLTPSVLGEAETV-------------- 347
Query: 399 TQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELKEK 453
ER+ ++R+ + G V+++ G T+ + E
Sbjct: 348 ----------------------EERKIGDDRMTFVMGCKNPKAVSILIRGG-TDHVVSEV 384
Query: 454 KLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
+ + DA+ E+G + GGG L+ ++ ++
Sbjct: 385 ERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSV 426
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 28/217 (12%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
L D++ LGPKG +L S G K+ DG + E++++ P A L+ + A +
Sbjct: 22 LQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPT----ASLIAKVATAQD 77
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--D 202
D+ GDGTT++V++ L+ + ++ G +P +IT G E + + L+Q+ E
Sbjct: 78 DITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDR 137
Query: 203 SELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGV------VTLEE--GKSAENML 248
L DVA V A + + +++ + ++ V + E KS +
Sbjct: 138 ETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDT- 196
Query: 249 YVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD 285
++ G+ D G P M E+ +L +
Sbjct: 197 SLIRGLVLDHGARHP-------DMKKRVEDAYILTCN 226
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-14
Identities = 75/471 (15%), Positives = 167/471 (35%), Gaps = 135/471 (28%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD++ LGPK +L G + NDG + +E++++ P AK + + + +
Sbjct: 21 IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPA----AKSMIEISRTQD 76
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
+ GDGTT+ ++LA +++ + +P ++ K ++S LK++S V+
Sbjct: 77 EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSN 136
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKV----GRKGVVTLEE--------GKS 243
+ ++ V + + N+ +A+ V + + +++ G
Sbjct: 137 RDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGI 196
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITN 290
E+ V+ G+ ++ P +M +N +++L+D KK IT
Sbjct: 197 IEDSC-VLRGVMINKDVTHP-------RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITR 248
Query: 291 ARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGE 344
D I +E+E + L I LK G +
Sbjct: 249 EEDF-----TRIL----------QMEEEYIQQLC-------EDIIQLKPDVVITEKGISD 286
Query: 345 RKSQYLDD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVV--- 385
YL IA G ++ +++ +E +G + ++
Sbjct: 287 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSR-----PEELREEDVGTGAGLLEIK 341
Query: 386 -LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGA 444
+ + T + + A T++ L G
Sbjct: 342 KIGDEYFTFITECKDPKAC--------TIL------------------LRGA-------- 367
Query: 445 QTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
++ L E + ++DA+ + + + +V GGG + + ++ + + +
Sbjct: 368 -SKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAM 417
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 4e-14
Identities = 84/458 (18%), Positives = 174/458 (37%), Gaps = 123/458 (26%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+++ V +LGP+G + +L G I NDGVT+ KE+++E P AK++ + + +
Sbjct: 33 ISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQD 88
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
GDGTTT+V++A GL+ + ++ +P +I+ G S+ + ++S ++
Sbjct: 89 SFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADE 148
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKV----GRKGVVTLE-------EGKSA 244
+ L +A ++ ++ + EA+ V K V + +G +
Sbjct: 149 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAI 208
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINVL 298
++ ++ G+ D+ + P M ++ K+ L+D KK + I
Sbjct: 209 DDT-QLINGIIVDKEKVHP-------GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDP 260
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD 352
+ E+ L +V KI ++ A G + YL
Sbjct: 261 SM--------IQKFLAQEENMLREMVD-------KIKSVGANVVITQKGIDDMAQHYLSR 305
Query: 353 ----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396
+A TG +++ +D++ LG A +V
Sbjct: 306 AGIYAVRRVKKSDMDKLAKATGASIVST-----IDEISSSDLGTAERV------------ 348
Query: 397 GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELK 451
+ + + + ++G V+++ G TE +
Sbjct: 349 ------------------------EQVKVGEDYMTFVTGCKNPKAVSILVRGE-TEHVVD 383
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E + + D+L+ +A+E+G GGG T ++ ++
Sbjct: 384 EMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLR 421
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 6e-14
Identities = 81/461 (17%), Positives = 177/461 (38%), Gaps = 110/461 (23%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+AD + +LGPKG + ++++ G I NDG T+ K++ + PV A+++ + +A +
Sbjct: 31 VADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPV----ARMLVEVSAAQD 86
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
AGDGTT+ V+L L+ +++ G +P +I + +K V L +M +V
Sbjct: 87 SEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSD 146
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEE---------GKSAEN 246
+L A+ + + + + + +++ K+ + ++ G + ++
Sbjct: 147 REQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDD 206
Query: 247 MLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITNARD 293
+++G+ + I E K+ L+ K + + R
Sbjct: 207 T-EMIDGVVLTQTAIKS------AGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQ 259
Query: 294 LINVLE----------DAIRGAYP-ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGF 342
+ +L+ I+ A +L+I + I ++A+ L L I +K
Sbjct: 260 MDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDL-ALHFLSKLNIMVVKDIER 318
Query: 343 GERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA 402
E ++ ++ G I D ++ ++ L +A V
Sbjct: 319 EE-----IEFLSKGLGCKPIAD-----IELFTEDRLDSADLV------------------ 350
Query: 403 VSKRVAQIRTLIENAEQDYEREKLNERIAKLSG--------GVAVIQVGAQTETELKEKK 454
E + +I +++G V+V+ GA + E +
Sbjct: 351 ------------------EEIDSDGSKIVRVTGIRNNNARPTVSVVIRGA-NNMIIDETE 391
Query: 455 LRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
+ DAL + V+E ++ GGG + +S ++ ++
Sbjct: 392 RSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSM 432
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 6e-14
Identities = 84/458 (18%), Positives = 158/458 (34%), Gaps = 122/458 (26%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+ V TLGP+G + ++ G I NDG T+ K +++ P AK + A +
Sbjct: 23 IAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPA----AKTLVDIAKSQD 78
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS- 203
GDGTT+ +LA + + V G +P +I R ++ V+++K+++ V+
Sbjct: 79 AEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKED 138
Query: 204 ------ELADVAAVS------AGNNYEVGNMIAEAMSKVGRKGVVTLE-------EGKSA 244
L A + + M+ +A+ + ++ L+ +G +
Sbjct: 139 KVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML--DDLLQLKMIGIKKVQGGAL 196
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD------KKITNARDLINVL 298
E +V G+ F + + F E +Y N + L++ + NA ++ +
Sbjct: 197 EES-QLVAGVAFKKTFSYAGF----EMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTV 251
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD 352
ED D E L + KI A G+ +QY D
Sbjct: 252 ED--------YQAIVDAEWNILYDKLE-------KIHHSGAKVVLSKLPIGDVATQYFAD 296
Query: 353 ----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396
+ GG++ ++ + +VLG
Sbjct: 297 RDMFCAGRVPEEDLKRTMMACGGSIQTS-----VNALSSDVLGRCQVF------------ 339
Query: 397 GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETELK 451
E + ER +G +I G E ++
Sbjct: 340 ------------------------EETQIGGERYNFFTGCPKAKTCTIILRGG-AEQFME 374
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E + + DA+ + A++ +V GGG + LS +
Sbjct: 375 ETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR 412
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 7e-14
Identities = 90/458 (19%), Positives = 173/458 (37%), Gaps = 123/458 (26%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+ + + T GP+G + +L G I NDG T+ +++L+ P AKL+ Q A +
Sbjct: 42 VEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPA----AKLLVQIAKGQD 97
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
+ DGT T+V+ + L+ + ++ +P +I G +K + + ++++++ V
Sbjct: 98 EETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSIND 157
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKV----GRKGVVTLE-------EGKSA 244
L +A AG + +++ +A+++V G K V L+ G S
Sbjct: 158 TDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSI 217
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINVL 298
+ +V G+ D+ + P M EN K+ L+D +K +A IN
Sbjct: 218 NDT-QLVYGIVVDKEVVHP-------GMPKRLENAKIALIDASLEVEKPELDAEIRINDP 269
Query: 299 EDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLDD 352
+ D E+ + V KI A A G E YL
Sbjct: 270 TQ--------MQKFLDEEENLIKEKVD-------KILATGANVIICQKGIDEVAQSYLAK 314
Query: 353 ----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396
+A TGG V+ + +D++ ++ LG AS +
Sbjct: 315 KGVLAVRRAKKSDLEKLARATGGRVVSN-----IDEISEQDLGYASLI------------ 357
Query: 397 GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELK 451
ER+ +++ + G ++++ G E +
Sbjct: 358 ------------------------EERKVGEDKMVFVEGAKNPKSISILIRGG-LERLVD 392
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E + + DAL +++G + GGG + ++ K+
Sbjct: 393 ETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLR 430
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 8e-14
Identities = 88/496 (17%), Positives = 170/496 (34%), Gaps = 115/496 (23%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
L ++ LGPKG +L G K+ DG + E++++ P A L+ +AAA +
Sbjct: 29 LQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPT----AVLIARAAAAQD 84
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE 204
++ GDGTTT V L L+ + + + G +P +IT G E K + L + +
Sbjct: 85 EITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLS 144
Query: 205 -----LADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEE---------GKSA 244
L VA V A + ++ +A+ V L+ S
Sbjct: 145 NDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSP 204
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITNA 291
++ ++G+ D G P M +N +L+++ +K ++A
Sbjct: 205 KDT-TFIKGLVLDHGGRHP-------DMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSA 256
Query: 292 RDLINVLE----------DAIRGAYPILIIAEDIEQEALATLVVNKLRG----ALKI-AA 336
+ I + +++N+ G +L + A
Sbjct: 257 DQRDKLAASERKFVDAKLKKIIDLKNEVCGM----DPDKGFVIINQK-GIDPMSLDVFAK 311
Query: 337 LKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396
K + ++ + ++TGG ++ + ++LG + V
Sbjct: 312 HNILALRRAKRRNMERLQLVTGGEAQNS-----VEDLSPQILGFSGLV------------ 354
Query: 397 GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETELK 451
Y+ E+ ++ ++ G+ T L
Sbjct: 355 ------------------------YQETIGEEKFTYVTENTDPKSCTILIKGS-THYALA 389
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDE--EKVGADIVKR 508
+ K V D L A +++ I+ G G + LS + + + K G +
Sbjct: 390 QTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAE 449
Query: 509 ALCYPLKLIAKNAGVN 524
AL K + KN+G +
Sbjct: 450 ALLVIPKTLVKNSGFD 465
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 9e-14
Identities = 99/466 (21%), Positives = 178/466 (38%), Gaps = 120/466 (25%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
+A+ V TLGPKG + +L G + NDGVT+ +E+ +E P AK++ +
Sbjct: 26 LAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEV 81
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
A GDGTTT+VV+A L+ + +++ +P ++ +G + ++ LK ++ E
Sbjct: 82 AKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACE 141
Query: 200 VE---DSELADVAA------VSAGNNYEVGNMIAEAMSKVGR-KGVVTLE-------EGK 242
V L +A + ++ +I EA+S V +G V + G
Sbjct: 142 VGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGA 201
Query: 243 SAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLIN 296
S ++ +++G+ D+ +S +M + + K+ L++ K+ T+A I
Sbjct: 202 SIDDT-ELIKGVLVDKERVSA-------QMPKKVTDAKIALLNCAIEIKETETDAEIRIT 253
Query: 297 VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYL 350
L+ + E++ L +V +I A A G + YL
Sbjct: 254 DPAK--------LMEFIEQEEKMLKDMVA-------EIKASGANVLFCQKGIDDLAQHYL 298
Query: 351 DD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV 394
+A TG VI + + + LG+A V
Sbjct: 299 AKEGIVAARRVKKSDMEKLAKATGANVIAA-----IAALSAQDLGDAGLV---------- 343
Query: 395 GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETE 449
ER+ + + + V ++ G TE
Sbjct: 344 --------------------------EERKISGDSMIFVEECKHPKAVTMLIRGT-TEHV 376
Query: 450 LKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
++E V+DA+ +E+G IV GGG T + LS K+ E +
Sbjct: 377 IEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGI 422
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 9e-14
Identities = 94/471 (19%), Positives = 173/471 (36%), Gaps = 137/471 (29%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144
+A+ V TLGPKG + +L G + ND T+ +++L+ P AK++ + A +
Sbjct: 35 IAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKTQD 90
Query: 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--- 201
AGDGTTT+VV+A L+ + +++ +P +IT+G ++ L +++ V+
Sbjct: 91 KEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDD 150
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLE-----------EGKSA 244
+ L +AA + + + + EA+ +V K G+
Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGV 210
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KK--------ITNA 291
E +V G+ D+ + P +M EN K+ L++ KK IT+
Sbjct: 211 EES-ELVRGVVIDKEVVHP-------RMPKRVENAKIALINEALEVKKTETDAKINITSP 262
Query: 292 RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGER 345
L + + E++ L +V IA A G +
Sbjct: 263 DQL-----MSFL----------EQEEKMLKDMVD-------HIAQTGANVVFVQKGIDDL 300
Query: 346 KSQYLDD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKD 389
YL +A TG ++ + + + E LG A V
Sbjct: 301 AQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTN-----VKDLTPEDLGYAEVV----- 350
Query: 390 TTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGA 444
ER+ E + + G V ++ G
Sbjct: 351 -------------------------------EERKLAGENMIFVEGCKNPKAVTILIRGG 379
Query: 445 QTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
TE + E + +EDA+ K +E+G ++ GG + L+ ++D + +
Sbjct: 380 -TEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV 429
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 6e-13
Identities = 89/459 (19%), Positives = 152/459 (33%), Gaps = 128/459 (27%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIV--NDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143
DLV TLGPKG + +L S ++ NDG T+ K + +++P AK++ +
Sbjct: 23 GDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPA----AKVLVDMSRVQ 78
Query: 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS 203
+D GDGTT+ VLA L+ E ++A +P I G + +KA L + +
Sbjct: 79 DDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSD 138
Query: 204 ELAD------VAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEE-------GKSA 244
E+ +A + + + EA+ ++ KG LE G S
Sbjct: 139 EVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL--KGSGNLEAIHVIKKLGGSL 196
Query: 245 ENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-------KKITNARDLINV 297
+ Y+ EG D+ EN K+L+ + KI +R ++
Sbjct: 197 ADS-YLDEGFLLDK--------KIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDS 247
Query: 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLD 351
+ E E+E + V +I Q
Sbjct: 248 TAK--------VAEIEHAEKEKMKEKVE-------RILKHGINCFINRQLIYNYPEQLFG 292
Query: 352 D----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVG 395
+A++TGG + D LG+ +
Sbjct: 293 AAGVMAIEHADFVGVERLALVTGGEIAST-----FDHPELVKLGSCKLI----------- 336
Query: 396 DGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETEL 450
E +++ SG ++ GA T+ L
Sbjct: 337 -------------------------EEVMIGEDKLIHFSGVALGEACTIVLRGA-TQQIL 370
Query: 451 KEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E + + DAL V++ V GGGC+ + ++ V
Sbjct: 371 DEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVT 409
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 1e-12
Identities = 89/454 (19%), Positives = 172/454 (37%), Gaps = 107/454 (23%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145
A ++ +LGP+G + +L S G I NDG T+ ++EL++ + AKL+ Q + +D
Sbjct: 58 ASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEI----AKLLVQLSKSQDD 113
Query: 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-- 203
GDGTT VVLA L+ + ++++ G +P+ I G ++ +K +S+L++ ++ S
Sbjct: 114 EIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASND 173
Query: 204 -----ELADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLEE---------GKS 243
L A + + ++ M EA+ V K ++ G S
Sbjct: 174 ELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGS 233
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINV 297
+ ++ G+ D+ + P + KL ++ K T + I+
Sbjct: 234 ISDS-KLINGVILDKDFSHPQMPK-CVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISS 291
Query: 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLD 351
+E+ + EQ+ ++ + A GF + + L
Sbjct: 292 VEE--------YQKLQTYEQDKFKEMID-------DVKKAGADVVICQWGFDDEANHLLL 336
Query: 352 D----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVG 395
IAI T G ++ + K+ LG S++
Sbjct: 337 QNDLPAVRWVGGQELEHIAISTNGRIVPR-----FQDLSKDKLGTCSRIY-------EQE 384
Query: 396 DGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKL 455
G+T+D + +IE +K + V G+ + + E +
Sbjct: 385 FGTTKDRM--------LIIEQ--------------SKETKTVTCFVRGS-NKMIVDEAER 421
Query: 456 RVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
+ D+L + V++ +V GGG + +S V
Sbjct: 422 ALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVS 455
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 6e-12
Identities = 92/460 (20%), Positives = 156/460 (33%), Gaps = 128/460 (27%)
Query: 85 LADLVGVTLGPKGRNVVLESKYGAPKIV-NDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143
+ DLV TLGPKG + +L+S +V NDG T+ K + L++P AK++ +
Sbjct: 29 VGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPA----AKVLVNISKVQ 84
Query: 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGA-NPVLITRGIEKTSKALVSELKQMSKEVED 202
+D GDGTT+ VL+ L+ E K++ +P I G S A + L + + +
Sbjct: 85 DDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSH 144
Query: 203 SE------LADVAA------VSAGNNYEVGNMIAEAMSKVGRKGVVTLE-------EGKS 243
+ L +A + + + + A+ ++ KG LE G
Sbjct: 145 DKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRL--KGSTNLEHIQIIKILGGK 202
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-------KKITNARDLIN 296
+ ++ EG + EN K+L+ + KI + ++
Sbjct: 203 LSDS-FLDEGFILAK--------KFGNNQPKRIENAKILIANTTLDTDKVKIFGTKFKVD 253
Query: 297 VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYL 350
L E E+E + + KI+ + Q
Sbjct: 254 STAK--------LAQLEKAEREKMKNKIA-------KISKFGINTFINRQLIYDYPEQLF 298
Query: 351 DD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV 394
D +A++TGG V+ D+ K LG +
Sbjct: 299 TDLGINSIEHADFEGVERLALVTGGEVVST-----FDEPSKCKLGECDVI---------- 343
Query: 395 GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETE 449
E + K SG ++ GA T+
Sbjct: 344 --------------------------EEIMLGEQPFLKFSGCKAGEACTIVLRGA-TDQT 376
Query: 450 LKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
L E + + DAL+ +E V+GGGC + +S VD
Sbjct: 377 LDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVD 416
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 6e-12
Identities = 83/449 (18%), Positives = 158/449 (35%), Gaps = 87/449 (19%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145
A++V +LGP G + +L G I NDG T+ K +E+E P AK++ + A +
Sbjct: 23 ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKVLCELADLQDK 78
Query: 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL-KQMSKEVEDS- 203
GDGTT+ V++A L+ ++V +P + G K V + + + ++
Sbjct: 79 EVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG 138
Query: 204 --ELADVAA------VSAGNNYEVGNMIAEAMSKV-----GRKGVVTLE-------EGKS 243
L + A V N N++ +A+ + + + G+S
Sbjct: 139 RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRS 198
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARDLINV 297
++ G + S M N K+ +D K+ + +I
Sbjct: 199 QMES-MLINGYALNCVVGSQ-------GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITD 250
Query: 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQYLD 351
E L E + + KI A A G + +Y
Sbjct: 251 PEK--------LDQIRQRESDITKERIQ-------KILATGANVILTTGGIDDMCLKYFV 295
Query: 352 DIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIR 411
+ + V++ + L ++ K G T++ ST +
Sbjct: 296 EAGAMAVRRVLKRD----LKRIAK-ASG-----------ATVL---STLANLEGEETFEA 336
Query: 412 TLIENAEQDYEREKLNERIAKLSG-----GVAVIQVGAQTETELKEKKLRVEDALNATKA 466
+++ AE+ + ++ + + +VI GA + E + + DAL K
Sbjct: 337 SMLGQAEEVVQERICDDELILIKNTKARTSASVILRGA-NDFMCDEMERSLHDALCVVKR 395
Query: 467 AVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
+E +V GGG LS ++ ++
Sbjct: 396 VLESKSVVPGGGAVEAALSIYLENYATSM 424
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 8e-12
Identities = 90/458 (19%), Positives = 170/458 (37%), Gaps = 111/458 (24%)
Query: 80 NGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 139
+A+ + +LGP G + ++ K G + NDG T+ ++++ + AKL+ +
Sbjct: 17 MAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI----AKLMVEL 72
Query: 140 AAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199
+ +D GDGTT VVLA L+ E +++ G +P+ I G E+ ++ + L ++S
Sbjct: 73 SKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDS 132
Query: 200 VE-----DSELADVAA------VSAGNNYEVGNMIAEAMSKV--GRKGVVTLE------- 239
V L A V + ++ + A+ V ++ V E
Sbjct: 133 VLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGK 192
Query: 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVD-----KKI-TNARD 293
G E+ +++G+ D+ + P +M + E+ K+ ++ K T +
Sbjct: 193 VGGRLEDT-KLIKGVIVDKDFSHP-------QMPKQVEDAKIAILTCPFEPPKPKTKHKL 244
Query: 294 LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKS 347
+ +ED + E+E ++ +I A GF + +
Sbjct: 245 DVTSVED--------FKALQKYEKEKFEEMIR-------QIKETGANLAVCQWGFDDEAN 289
Query: 348 QYLDD----------------IAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTT 391
L IAI TGG ++ ++ E LG A V
Sbjct: 290 HLLLQNDLPAVRWVGGPEIELIAIATGGRIVPR-----FSELTAEKLGFAGLV------- 337
Query: 392 TIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK 451
+ G+T+D + +IE K S V + G + ++
Sbjct: 338 KEISFGTTKDKM--------LVIEQ--------------CKNSRAVTIFIRGG-NKMIIE 374
Query: 452 EKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 488
E K + DAL + + + +V GGG + + V
Sbjct: 375 EAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVS 412
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 8e-12
Identities = 90/577 (15%), Positives = 187/577 (32%), Gaps = 171/577 (29%)
Query: 52 LRRARTPKIYAAKDLHFNKD-GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPK 110
L + + + + + M ++ P + + +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKT----------EQRQPSMMTRMYIEQRD--R 118
Query: 111 IVNDGVTVAK-EVELEDPVENIGAKLVRQAAAKTND--------LAGDGTTTSVVLAQGL 161
+ ND AK V P + RQA + + G G T +A
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKL-----RQALLELRPAKNVLIDGVLGSGKT---WVA-LD 169
Query: 162 IAEGVKVVAAGANPVL-ITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVG 220
+ KV + + + + ++ L+++ +++ + + +N ++
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLR 226
Query: 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYEN-- 278
I +++ R L + K EN L V+ + V +++ A N
Sbjct: 227 --IHSIQAELRR-----LLKSKPYENCLLVLL----N--------VQNAK--AWNAFNLS 265
Query: 279 CKLLLV--DKKITNARD------------------------LINVL--------EDAIRG 304
CK+LL K++T+ L+ L + +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 305 AYPILI--IAEDIEQEALAT------LVVNKLRGALK--IAALKAPGFGERKSQYLDDIA 354
P + IAE I ++ LAT + +KL ++ + L+ E + + D ++
Sbjct: 326 N-PRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPA---EYRKMF-DRLS 379
Query: 355 ILTGGTVIRDEVGLAL---DKVGKEV------LGNASKVVLTKDTTTIVGDGSTQDAVSK 405
+ I + L+L D + +V L S V +TI + K
Sbjct: 380 VFPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 406 RVAQI---RTLIE--NAEQDYEREKLNERIAKLSG------G--VAVIQVGAQTETELK- 451
+ R++++ N + ++ + L L G + I+ + T +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEH-PERMTLFRM 495
Query: 452 --------EKKLRVED-ALNATKAAVEEGIVVGGGCTLLRL--------------SSKVD 488
E+K+R + A NA+ + + TL +L V+
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILN---------TLQQLKFYKPYICDNDPKYERLVN 546
Query: 489 AIKETLDNDEEKV----GADIVKRALCYPLKLIAKNA 521
AI + L EE + D+++ AL + I + A
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 64/234 (27%)
Query: 268 DSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNK 327
D E +Y+ +D+++V EDA + + +D+ + L+ ++
Sbjct: 8 DFETGEHQYQY-------------KDILSVFEDAFVDNFDCKDV-QDMPKSILSKEEIDH 53
Query: 328 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT 387
+ + + + L L L K +E++ + VL
Sbjct: 54 I--------IMSKDAVSG-TLRL--FWTL-------------LSK-QEEMVQKFVEEVLR 88
Query: 388 KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 447
+ + ++ I+T E + E+ +L QV A+
Sbjct: 89 INYKFL-------------MSPIKT--EQRQPSMMTRMYIEQRDRLYNDN---QVFAKYN 130
Query: 448 TELKEKKLRVEDALNATKAAVEEGIVV-G-GGC--TLLRLSS-KVDAIKETLDN 496
+ L++ AL + + +++ G G T + L ++ +D
Sbjct: 131 VSRLQPYLKLRQAL--LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145
AD + +LGPKG + +++ G I NDG T+ K++++ P A+++ + + +
Sbjct: 24 ADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPA----ARMLVELSKAQDI 79
Query: 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS 203
AGDGTT+ V++A L+ K++ G +P +I+ +K + + L MS+ VE S
Sbjct: 80 EAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELS 137
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 82/451 (18%), Positives = 163/451 (36%), Gaps = 89/451 (19%)
Query: 86 ADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145
A++V +LGP G + +L G + NDG T+ ++++ P K++ + A + +
Sbjct: 37 ANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPA----GKILVELAQQQDR 92
Query: 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE--- 201
GDGTT+ V++A L+ ++V +P I G + + + + +S V+
Sbjct: 93 EIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLG 152
Query: 202 DSELADVAA------VSAGNNYEVGNMIAEAMSKV-----GRKGVVTLE-------EGKS 243
L ++A + ++ NM+ +A+ V + ++ GKS
Sbjct: 153 KETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKS 212
Query: 244 AENMLYVVEGMQFDRGYISPYFVTDSEKM--AVEYENCKLLLVD-----KKI-TNARDLI 295
A +V G + S M + N K+ +D ++ + I
Sbjct: 213 ATES-LLVPGYALNCTVASQ-------AMPKRIAGGNVKIACLDLNLQKARMAMGVQINI 264
Query: 296 NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA------PGFGERKSQY 349
+ E L E + V KI A G + +
Sbjct: 265 DDPEQ--------LEQIRKREAGIVLERVK-------KIIDAGAQVVLTTKGIDDLCLKE 309
Query: 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQ 409
+ I+ +R KE L ++ T+V S+ +
Sbjct: 310 FVEAKIM----GVRR--------CKKEDLRRIARAT----GATLV---SSMSNLEGEETF 350
Query: 410 IRTLIENAEQDYEREKLNERIAKLSGG-----VAVIQVGAQTETELKEKKLRVEDALNAT 464
+ + ++ + + ++ + G ++I GA + L E + + D+L+
Sbjct: 351 ESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGA-NDYSLDEMERSLHDSLSVV 409
Query: 465 KAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494
K +E G +V GGGC L+ +D T+
Sbjct: 410 KRTLESGNVVPGGGCVEAALNIYLDNFATTV 440
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 82/439 (18%), Positives = 166/439 (37%), Gaps = 124/439 (28%)
Query: 111 IVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVA 170
I NDG T+ KE++++ P AK++ + + + GDGTTT+ VL+ L+++ +++
Sbjct: 11 ITNDGATILKEMDIQHPA----AKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIM 66
Query: 171 AGANPVLITRGIEKTSKALVSELKQMSKEVE---DSELADVAA------VSAGNNYEVGN 221
G + +I+ G ++ L+ ++ + ++ L +A + ++
Sbjct: 67 KGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSA 126
Query: 222 MIAEAMSKV-----GRKGVVTLE-------EGKSAENMLYVVEGMQFDRGYISPYFVTDS 269
+ +A+ + V LE G S ++ +++G+ D+ P
Sbjct: 127 LTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDS-ELIDGLVIDKERSHP------ 179
Query: 270 EKMAVEYENCKLLLVD-----KKI-TNARDLINVLEDAIRGAYPILIIAEDIEQEALATL 323
M + EN K+LL+ +K ++ I + + D E++ + +
Sbjct: 180 -NMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQ--------MQLFLDQEEKMMREM 230
Query: 324 VVNKLRGALKIAALKA------PGFGERKSQYLDD----------------IAILTGGTV 361
K+ A A G + Y++ ++ +TG T+
Sbjct: 231 AE-------KVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATI 283
Query: 362 IRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421
I+D LD++ E +G A V
Sbjct: 284 IQD-----LDQITTEDVGTAGLV------------------------------------E 302
Query: 422 EREKLNERIAKLSGG-----VAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVG 475
E+E ++ ++G V V+ G TE + + DAL+ +E+G +VVG
Sbjct: 303 EKEVRGGKMTYVTGCQNSKAVTVLLHGG-TEHVVDSLDHALNDALHVVGVVIEDGKVVVG 361
Query: 476 GGCTLLRLSSKVDAIKETL 494
GG + + LS ++ TL
Sbjct: 362 GGSSEVELSLRLSEYASTL 380
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| 1kp8_A | 547 | Groel protein; chaperonin, assisted protein foldin | 100.0 | |
| 3rtk_A | 546 | 60 kDa chaperonin 2; heat shock protein, chaperone | 100.0 | |
| 1we3_A | 543 | CPN60(groel); chaperonin, chaperone, groel, HSP60, | 100.0 | |
| 1iok_A | 545 | Chaperonin 60; chaperone; 3.20A {Paracoccus denitr | 100.0 | |
| 3p9d_C | 590 | T-complex protein 1 subunit gamma; HSP60, eukaryot | 100.0 | |
| 3p9d_A | 559 | T-complex protein 1 subunit alpha; HSP60, eukaryot | 100.0 | |
| 3ko1_A | 553 | Chaperonin; 9-fold symmetry, double ring, ATP hydr | 100.0 | |
| 3iyg_B | 513 | T-complex protein 1 subunit beta; TRIC/CCT, asymme | 100.0 | |
| 3iyg_H | 515 | T-complex protein 1 subunit ETA; TRIC/CCT, asymmet | 100.0 | |
| 3ruv_A | 543 | Chaperonin, CPN; double-ring, protein folding mach | 100.0 | |
| 1q3q_A | 548 | Thermosome alpha subunit; chaperone, chaperonin; H | 100.0 | |
| 1a6d_B | 543 | Thermosome (beta subunit); group II chaperonin, CC | 100.0 | |
| 1a6d_A | 545 | Thermosome (alpha subunit); group II chaperonin, C | 100.0 | |
| 3p9d_D | 528 | T-complex protein 1 subunit delta; HSP60, eukaryot | 100.0 | |
| 3iyg_A | 529 | T-complex protein 1 subunit alpha; TRIC/CCT, asymm | 100.0 | |
| 3iyg_E | 515 | T-complex protein 1 subunit; TRIC/CCT, asymmetric, | 100.0 | |
| 3iyg_D | 518 | T-complex protein 1 subunit delta; TRIC/CCT, asymm | 100.0 | |
| 3p9d_G | 550 | T-complex protein 1 subunit ETA; HSP60, eukaryotic | 100.0 | |
| 3p9d_B | 527 | T-complex protein 1 subunit beta; HSP60, eukaryoti | 100.0 | |
| 3p9d_E | 562 | T-complex protein 1 subunit epsilon; HSP60, eukary | 100.0 | |
| 3iyg_G | 515 | T-complex protein 1 subunit gamma; TRIC/CCT, asymm | 100.0 | |
| 3iyg_Q | 512 | T-complex protein 1 subunit theta; TRIC/CCT, asymm | 100.0 | |
| 3iyg_Z | 517 | T-complex protein 1 subunit zeta; TRIC/CCT, asymme | 100.0 | |
| 3p9d_H | 568 | T-complex protein 1 subunit theta; HSP60, eukaryot | 100.0 | |
| 3p9d_F | 546 | T-complex protein 1 subunit zeta; HSP60, eukaryoti | 100.0 | |
| 3aq1_B | 500 | Thermosome subunit; group II chaperonin, protein f | 100.0 | |
| 3m6c_A | 194 | 60 kDa chaperonin 1; chaperone, ATP-binding, nucle | 100.0 | |
| 3osx_A | 201 | 60 kDa chaperonin; alpha, beta, apical domain, cha | 100.0 | |
| 1srv_A | 145 | Protein (groel (HSP60 class)); chaperone, cell div | 100.0 | |
| 1gml_A | 178 | T-complex protein 1 subunit gamma; chaperone, chap | 99.87 | |
| 1ass_A | 159 | Thermosome; chaperonin, HSP60, TCP1, groel, thermo | 99.78 |
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-110 Score=914.19 Aligned_cols=465 Identities=56% Similarity=0.846 Sum_probs=454.0
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
++|++.|| .++|+.|++||..|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+|||||||++++|+
T Consensus 1 ~~k~~~~g--~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~ 78 (547)
T 1kp8_A 1 AAKDVKFG--NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVAS 78 (547)
T ss_dssp CCEEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CCcccccc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHH
Confidence 37999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHh
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 220 (531)
+||+++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++++++. +|.++|++|++++++|+
T Consensus 79 ~qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~ 158 (547)
T 1kp8_A 79 KANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVG 158 (547)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHH
T ss_pred hhccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHH
Q 009601 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (531)
Q Consensus 221 ~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (531)
+++++|+.+++++|+|++++|++++|++++++||+|+++|.||||++++++|+++++||+|+++|++|++++++++++++
T Consensus 159 ~liadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~ 238 (547)
T 1kp8_A 159 KLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEA 238 (547)
T ss_dssp HHHHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCce
Q 009601 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (531)
Q Consensus 301 i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~ 380 (531)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++.+|+|||++|||++++++.|++++++++++||+
T Consensus 239 i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~ 318 (547)
T 1kp8_A 239 VAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ 318 (547)
T ss_dssp HHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEE
T ss_pred HHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009601 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (531)
Q Consensus 381 ~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Da 460 (531)
|+.|+++++++++|+||++++.+++|++||+.+++.++++|+||+|+||+++|+|++|||+|||+|+.+++|+||+++||
T Consensus 319 a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DA 398 (547)
T 1kp8_A 319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDA 398 (547)
T ss_dssp EEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred eeEEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 461 l~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
||++|+++++|+|||||++|++++.+|++++. .++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 399 l~~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~g~~q-~~i~~~a~ALe~ip~~la~NaG~d~~~vv~ 466 (547)
T 1kp8_A 399 LHATRAAVEEGVVAGGGVALIRVASKLADLRG-QNADQN-VGIKVALRAMEAPLRQIVLNCGEEPSVVAN 466 (547)
T ss_dssp HHHHHHHHHHCEEETTTHHHHHHHHHTTTCCC-SSHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhccCCEEeCCcHHHHHHHHHHHHHhc-cCchHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999998875 555554 999999999999999999999999998875
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-111 Score=917.58 Aligned_cols=463 Identities=56% Similarity=0.848 Sum_probs=384.2
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
|+|+|.|| .++|..|+.|++.|+++|+|||||+||||||++++|+|+|||||+||||+|+++||++||||||++++|+
T Consensus 1 ~~k~~~~~--~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~ 78 (546)
T 3rtk_A 1 MAKTIAYD--EEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAK 78 (546)
T ss_dssp --------------------------------------------------------------CCCHHHHHHHHHHHHHHT
T ss_pred CCceeecc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHH
Confidence 48999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHh
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 220 (531)
+||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++++++. +|.++|++|++ +++++
T Consensus 79 ~qd~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~~e~L~~vA~iS~~-~~~i~ 157 (546)
T 3rtk_A 79 KTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG-DQSIG 157 (546)
T ss_dssp SCC-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHH
T ss_pred hhhhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHhHeEEeCC-chHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877 89999999998 88999
Q ss_pred HHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHH
Q 009601 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (531)
Q Consensus 221 ~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (531)
+++++|+.+++++|+|+++.+++..+.+++++||+|+++|.||||++++++|+++++||+|+++|++|++++++++++++
T Consensus 158 ~liadAv~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs~~~~l~~~le~ 237 (546)
T 3rtk_A 158 DLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEK 237 (546)
T ss_dssp HHHHHHHHHSCTTSEEEEECCSSSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEECCSTTTHHHHHH
T ss_pred HHHHHHHHHhccCCceEEEecCCcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccCCHHHHHHHHHH
Confidence 99999999999999999987877665559999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCce
Q 009601 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (531)
Q Consensus 301 i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~ 380 (531)
+.+.|+|||||+++|+++++++|+.|+++|+++|++||+|+||+.++.+|+|||++|||++++++.|++++++++++||+
T Consensus 238 I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~ 317 (546)
T 3rtk_A 238 VIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGK 317 (546)
T ss_dssp HHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEE
T ss_pred HHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009601 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (531)
Q Consensus 381 ~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Da 460 (531)
|+.|+++++++++|+||++++.++.|++||+.++++++++|+||+|+||+++|+|++|||+|||+|+.+++|+||+++||
T Consensus 318 a~~v~i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DA 397 (546)
T 3rtk_A 318 ARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDA 397 (546)
T ss_dssp EEEEEECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHH
T ss_pred eEEEEEcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 461 l~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
||++|+++++|+|||||++|++++.+|++++ .++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 398 l~a~r~av~~giVpGGGa~e~~~s~~L~~~~--~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~ 464 (546)
T 3rtk_A 398 VRNAKAAVEEGIVAGGGVTLLQAAPTLDELK--LEGDEA-TGANIVKVALEAPLKQIAFNSGLEPGVVAE 464 (546)
T ss_dssp HHHHHHHHHHCEEETTTHHHHTTGGGSTTSC--CCTTHH-HHHHHHHHHTTHHHHHHHTTTTCCHHHHHH
T ss_pred HHHHHHHHhCCcccCCcHHHHHHHHHHHHhc--cccHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999999999999887 667766 899999999999999999999999998875
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-109 Score=908.22 Aligned_cols=465 Identities=57% Similarity=0.861 Sum_probs=454.3
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
|+|+|.|| .++|..|++||..|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+|||||||++++|+
T Consensus 1 ~~k~~~~g--~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~ 78 (543)
T 1we3_A 1 MAKILVFD--EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVAS 78 (543)
T ss_dssp -CEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CCcccccc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHH
Confidence 37999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHh
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 220 (531)
+||+++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++++++. +|.++|++|++ +++|+
T Consensus 79 ~qd~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~l~~vA~iS~~-~~~i~ 157 (543)
T 1we3_A 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISAN-DPEVG 157 (543)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHH
T ss_pred hhheecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHhhhhhcC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999998 89999
Q ss_pred HHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHH
Q 009601 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (531)
Q Consensus 221 ~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (531)
+++++|+.+++++|.|++++|++++|++++++||+|+++|.||||++++++|+++++||+|+++|++|++++++++++++
T Consensus 158 ~li~dAv~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is~~~~l~~~le~ 237 (543)
T 1we3_A 158 KLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQ 237 (543)
T ss_dssp HHHHHHHHTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEecCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCce
Q 009601 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (531)
Q Consensus 301 i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~ 380 (531)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++.+|+|||++|||++++++.|++++++++++||+
T Consensus 238 i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~ 317 (543)
T 1we3_A 238 VAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGR 317 (543)
T ss_dssp HHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEE
T ss_pred HHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009601 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (531)
Q Consensus 381 ~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Da 460 (531)
|+.|+++++++++|+||++++.+++|++||+.+++.++++|+||+|+||+++|+|++|||+|||+|+.+++|+||+++||
T Consensus 318 a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DA 397 (543)
T 1we3_A 318 AERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDA 397 (543)
T ss_dssp EEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 461 l~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
||++|+++++|+|||||++|++++.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 398 l~~~r~av~~giVpGGGa~e~~~s~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~ 466 (543)
T 1we3_A 398 LNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEA-TGAKIVRRALEEPARQIAENAGYEGSVIVQ 466 (543)
T ss_dssp HHHHHHHHHHCEEETTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhccCcCCCccHHHHHHHHHHHHHhhccCchHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999999999877766665 899999999999999999999999998875
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-110 Score=916.00 Aligned_cols=465 Identities=54% Similarity=0.848 Sum_probs=411.9
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
|+|+|.|| .++|..|+.||..|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+|||||||++++|+
T Consensus 2 ~~k~~~~g--~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~ 79 (545)
T 1iok_A 2 AAKEVKFN--SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVAS 79 (545)
T ss_dssp CCEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred Cchhhhcc--HHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHH
Confidence 48999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-hhHHhhhhccCChhhHh
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 220 (531)
+||+++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++++++. +|.++|++|++++++|+
T Consensus 80 ~qd~e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~va~iS~~~~~~i~ 159 (545)
T 1iok_A 80 RTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIG 159 (545)
T ss_dssp HGGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCCSTTTTTHHHHHTTTTCHHHH
T ss_pred hhccccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHhhcCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHH
Q 009601 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (531)
Q Consensus 221 ~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 300 (531)
+++++|+.+++++|.|++++|++++|++++++||+|+++|.||||++++++|+++++||+|+++|++|++++++++++++
T Consensus 160 ~li~dAv~~V~~~g~I~Ve~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~~~~~l~~~le~ 239 (545)
T 1iok_A 160 QQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLES 239 (545)
T ss_dssp HHHHHHHHHHCTTSCCCCEECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC-------
T ss_pred HHHHHHHHHhccCCeEEEEeCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCce
Q 009601 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (531)
Q Consensus 301 i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~ 380 (531)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++.+|+|||++|||++++++.|++++++++++||+
T Consensus 240 i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~ 319 (545)
T 1iok_A 240 VIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGR 319 (545)
T ss_dssp ----CCCCEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEE
T ss_pred HHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009601 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (531)
Q Consensus 381 ~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Da 460 (531)
|+.|++++++|++|+||++++.+++|++||+.+++.++++|+||+|+||+++|+|++|||+|||+|+.+++|+||+++||
T Consensus 320 a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DA 399 (545)
T 1iok_A 320 AKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDA 399 (545)
T ss_dssp EEEEEECSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 461 l~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
||++|+++++|+|||||++|++++.+|++++. .++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 400 l~~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~ 467 (545)
T 1iok_A 400 LNATRAAVQEGIVVGGGVALVQGAKVLEGLSG-ANSDQD-AGIAIIRRALEAPMRQIAENAGVDGAVVAG 467 (545)
T ss_dssp HHHHHHHHHHCEEETTTHHHHHHGGGGGSCCC-SSHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHHHhc-cCchHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999998875 555555 999999999999999999999999998875
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-91 Score=770.07 Aligned_cols=432 Identities=19% Similarity=0.271 Sum_probs=368.3
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
..+..+| .++|..|+.||..|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++
T Consensus 11 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~----Akll~e~a~~ 84 (590)
T 3p9d_C 11 SQERTTG--RQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPA----AKSMLELSRT 84 (590)
T ss_dssp TCCBCTT--HHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHH----HHTHHHHTTT
T ss_pred CcchhhH--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHH----HHHHHHHHHh
Confidence 3456677 899999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc--h-hhHHhhhhccC----
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKV-VAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAG---- 214 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~l-i~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~---- 214 (531)
||+++||||||+||||++||+++.++ +++|+||+.|++||++|++.++++|++++++++. . .|.++|+||++
T Consensus 85 qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~L~~vA~tslsSK~~ 164 (590)
T 3p9d_C 85 QDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYV 164 (590)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTTCCTHHHHHHHTTTSTTSTT
T ss_pred hhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999 9999999999999999999999999999999874 3 89999998864
Q ss_pred --ChhhHhHHHHHHHHhhccCCc----------------eE--eecCCCccceeEEEeeeEEeecccCCccccCcccCee
Q 009601 215 --NNYEVGNMIAEAMSKVGRKGV----------------VT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 274 (531)
Q Consensus 215 --~~~~l~~li~~A~~~v~~~g~----------------I~--v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~ 274 (531)
++++|++|+++|+.++++++. |+ ..+|++++|+ ++++||+|++++.+| +|++
T Consensus 165 ~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds-~lv~Gmvfdk~~~~~-------~m~~ 236 (590)
T 3p9d_C 165 IHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDS-RVLKGVLLNKDVVHP-------KMSR 236 (590)
T ss_dssp GGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGC-BCCSSEEECCCCSCT-------TSCS
T ss_pred cccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccc-eeeeEEEEecccCCC-------CCcc
Confidence 478999999999999987642 22 2479999999 899999999998776 4888
Q ss_pred eccceeEeeeccc-------------cCCHHHHHHH-----------HHHHHhcCCCEEEEeccchHHHHHHHHHHhhcc
Q 009601 275 EYENCKLLLVDKK-------------ITNARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNKLRG 330 (531)
Q Consensus 275 ~~~~~kIll~d~~-------------i~~~~~l~~~-----------le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g 330 (531)
+++||||+++|++ |++++++.++ ++++++.|++|||++++|+++++++|.++++
T Consensus 237 ~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~I-- 314 (590)
T 3p9d_C 237 HIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGC-- 314 (590)
T ss_dssp CEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTTC--
T ss_pred eeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhccc--
Confidence 9999999999995 3556666554 4688899999999888999999999998743
Q ss_pred cceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCce-eeEEE---EeCceEEEEcCCCChhh----
Q 009601 331 ALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVV---LTKDTTTIVGDGSTQDA---- 402 (531)
Q Consensus 331 ~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~-~~~v~---i~~~~~~~~~g~~~~~~---- 402 (531)
+.|+++++.+|+|||++|||++++ +++++++++||+ |+.|+ +++++|++|+||++++.
T Consensus 315 ---------~av~~~~k~~le~ia~~TGa~iis-----~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~ 380 (590)
T 3p9d_C 315 ---------SVLRRVKKSDNNRIARVTGATIVN-----RVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGW 380 (590)
T ss_dssp ---------CCCCCCCHHHHHHHHHHHTCCCCS-----CSTTCCTTSCBCCCSEEECCEETTEECEEECC----------
T ss_pred ---------eeeccCCHHHHHHHHHHhCCceee-----cccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccccccc
Confidence 457799999999999999999998 689999999999 99997 57899999999998888
Q ss_pred ----------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Q 009601 403 ----------------------VSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (531)
Q Consensus 403 ----------------------i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Da 460 (531)
+++|++||+.+++.++++|+++ +++|+|++|||+|||+|+.+++|+||+++||
T Consensus 381 ~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~-----~~~l~ggv~tI~lrg~te~~l~E~kr~i~DA 455 (590)
T 3p9d_C 381 SHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHH-----HHHGSGKACTIMLRGGSKDILNEIDRNLQDA 455 (590)
T ss_dssp ----------------------------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHH
T ss_pred cccccccccchhhhhcchhhHHHHHHHHHHHHHHhccCCHHHHH-----HHhhcCCeeEEEEcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999976 4789999999999999999999999999999
Q ss_pred HHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 461 LNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 461 l~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
||++|+++++| +|||||++|++++.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 456 l~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~ 525 (590)
T 3p9d_C 456 MAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQ-WPYQAVADAMECIPRTLIQNAGGDPIRLLS 525 (590)
T ss_dssp HHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCSTTH-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999996 9999999999999999999888888877 899999999999999999999999998875
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-89 Score=752.76 Aligned_cols=407 Identities=23% Similarity=0.331 Sum_probs=376.7
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
+|+..|| .++|..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |+|++++|++
T Consensus 16 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 89 (559)
T 3p9d_A 16 GGEKISG--DDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPA----GKILVELAQQ 89 (559)
T ss_dssp SCEEEET--HHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHH----HHHHHHHHHH
T ss_pred cccccch--HHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHH----HHHHHHHHHH
Confidence 6999999 999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh-cccccCc--h-hhHHhhhhccCC---
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVED--S-ELADVAAVSAGN--- 215 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~-~s~~v~~--~-~l~~va~ts~~~--- 215 (531)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++ ++++++. . .|.++|+||+++
T Consensus 90 qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~L~~vA~tsl~sK~~ 169 (559)
T 3p9d_A 90 QDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKII 169 (559)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CTTHHHHHHHTTSSSGG
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999 9999875 3 899999999875
Q ss_pred ---hhhHhHHHHHHHHhhcc-----CCc-----eEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeecc--c
Q 009601 216 ---NYEVGNMIAEAMSKVGR-----KGV-----VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYE--N 278 (531)
Q Consensus 216 ---~~~l~~li~~A~~~v~~-----~g~-----I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~--~ 278 (531)
+++|++|+++|+.++++ +|. |++ .+|++++|| ++++||+|+++|.||| |+.+++ |
T Consensus 170 ~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds-~lv~G~v~dk~~~~~~-------m~~~ie~~n 241 (559)
T 3p9d_A 170 GADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATES-LLVPGYALNCTVASQA-------MPKRIAGGN 241 (559)
T ss_dssp GTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCC-BCCSEECCCCCCSSTT-------SCSEECSSS
T ss_pred cchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccce-eEeccEEEeecccCCC-------cceeeccCC
Confidence 79999999999999984 244 333 359999998 8999999999999997 456788 9
Q ss_pred eeEeeecccc-------------CCHHH-----------HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceE
Q 009601 279 CKLLLVDKKI-------------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKI 334 (531)
Q Consensus 279 ~kIll~d~~i-------------~~~~~-----------l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i 334 (531)
|||+++|++| +++++ +.++++++.+.|+||||++++|+++++++|+.|+ |
T Consensus 242 ~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~------I 315 (559)
T 3p9d_A 242 VKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAK------I 315 (559)
T ss_dssp BCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTT------C
T ss_pred ceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcC------C
Confidence 9999999986 34444 6788999999999999999999999999999985 4
Q ss_pred EEeecCCcCccccchHHHHHHHhCCeEEecCCCccc-cCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHH
Q 009601 335 AALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLAL-DKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQI 410 (531)
Q Consensus 335 ~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l-~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l 410 (531)
+|| +++++.+|+|||++|||+++++..++.+ +++++++||+|+.|+ ++++++++|.||++
T Consensus 316 ~av-----~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~----------- 379 (559)
T 3p9d_A 316 MGV-----RRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSK----------- 379 (559)
T ss_dssp EEE-----SSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESS-----------
T ss_pred ceE-----ccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCC-----------
Confidence 555 4778999999999999999998766665 889999999999998 57999999999876
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHH
Q 009601 411 RTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDA 489 (531)
Q Consensus 411 ~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~ 489 (531)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++
T Consensus 380 ------------------------~~~~tI~lrG~te~~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~ 435 (559)
T 3p9d_A 380 ------------------------HSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDN 435 (559)
T ss_dssp ------------------------SCCCCEEEEESCHHHHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHH
T ss_pred ------------------------CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999 999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 490 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 490 ~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++.+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 436 ~~~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~ 475 (559)
T 3p9d_A 436 FATTVGSREQ-LAIAEFAAALLIIPKTLAVNAAKDSSELVA 475 (559)
T ss_dssp HHTTSCTTHH-HHHHHHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred HhcccChHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9988888877 899999999999999999999999998874
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-88 Score=739.31 Aligned_cols=402 Identities=21% Similarity=0.378 Sum_probs=368.8
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
+.+..|| .++|..|+.||+.|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |||++++|++
T Consensus 22 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 95 (553)
T 3ko1_A 22 GSSRTYG--KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPA----AKLLVQIAKG 95 (553)
T ss_dssp ------C--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHH----HHHHHHHHHT
T ss_pred Ccccchh--HHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChh----HHHHHHHhhC
Confidence 3556677 899999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--ch-hhHHhhhhccCC----
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN---- 215 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~---- 215 (531)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++ +. .|.++|+||+++
T Consensus 96 qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~L~~vA~tsl~sK~~~ 175 (553)
T 3ko1_A 96 QDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVA 175 (553)
T ss_dssp CSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHHHHHHHHHHHTTSSCC
T ss_pred CcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHhhHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999987 44 899999999875
Q ss_pred --hhhHhHHHHHHHHhhccC--Cc-------eEee--cCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009601 216 --NYEVGNMIAEAMSKVGRK--GV-------VTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (531)
Q Consensus 216 --~~~l~~li~~A~~~v~~~--g~-------I~v~--~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIl 282 (531)
+++|++|+++|+.+++++ |. |+++ +|+++.|+ ++++||+|+++|.||| |+++++||||+
T Consensus 176 ~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIl 247 (553)
T 3ko1_A 176 GAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDT-QLVYGIVVDKEVVHPG-------MPKRLENAKIA 247 (553)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGC-EEESEEEECSCBSCTT-------SCSCCBSCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccc-eeeEEEEecccccCCC-------CccccccceEE
Confidence 789999999999999985 65 6663 78899998 9999999999999997 46679999999
Q ss_pred eeccc-------------cCCHHH-----------HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEee
Q 009601 283 LVDKK-------------ITNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (531)
Q Consensus 283 l~d~~-------------i~~~~~-----------l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk 338 (531)
++|++ |+++++ +.++++++.+.|+||||++++|+++++++|.++ +|++|+
T Consensus 248 l~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~------gI~~v~ 321 (553)
T 3ko1_A 248 LIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKK------GVLAVR 321 (553)
T ss_dssp EECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHH------TCEEEC
T ss_pred EecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhc------chhhhh
Confidence 99994 577776 466789999999999999999999999999865 356665
Q ss_pred cCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009601 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (531)
Q Consensus 339 ~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~ 415 (531)
++++.+|+|||++|||++++ +++++++++||+|+.|++. +++++||.||+++
T Consensus 322 -----~v~k~~leria~~tGa~ivs-----~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~--------------- 376 (553)
T 3ko1_A 322 -----RAKKSDLEKLARATGGRVVS-----NIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP--------------- 376 (553)
T ss_dssp -----CCCHHHHHHHHTTTTCCEES-----CGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSS---------------
T ss_pred -----hhhhhhHHHHHHhhCCeeec-----ccccCChhhcchHHHHHHhhcCcceEEEeccCCCC---------------
Confidence 56799999999999999999 6999999999999999864 8899999999864
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccC
Q 009601 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (531)
Q Consensus 416 ~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (531)
..+||+|||+|+++++|+||+++||||++|+++++| +|||||++|++++.+|++++.++
T Consensus 377 --------------------~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~ 436 (553)
T 3ko1_A 377 --------------------KSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQV 436 (553)
T ss_dssp --------------------SCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred --------------------ceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhhcCceecCCceeEeHHHHHHHHhcccc
Confidence 589999999999999999999999999999999999 99999999999999999998888
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 437 ~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 471 (553)
T 3ko1_A 437 GGKEQ-LAVEAYANALESLVSILIENAGFDPIDLLM 471 (553)
T ss_dssp CSHHH-HHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred CChhH-hHHHHHHHHHHhHHHHHHHhcCCCHHHHHH
Confidence 88877 899999999999999999999999998864
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-88 Score=732.78 Aligned_cols=400 Identities=23% Similarity=0.314 Sum_probs=371.1
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCC--CCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKY--GAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 64 k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~--g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
.+-.|| .++|..|+.||+.|+++|+|||||+||||||++++ |+|+|||||+||||+|+++||. |||++++|+
T Consensus 3 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~----Akll~e~a~ 76 (513)
T 3iyg_B 3 ADEERA--ETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPA----AKVLVDMSR 76 (513)
T ss_pred cchhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHH----HHHHHHHHH
Confidence 445677 99999999999999999999999999999999999 9999999999999999999997 999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC-----ch-hhHHhhhhccC-
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-----DS-ELADVAAVSAG- 214 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~-----~~-~l~~va~ts~~- 214 (531)
+||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++ +. .|.++|+|+++
T Consensus 77 ~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslss 156 (513)
T 3iyg_B 77 VQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSS 156 (513)
T ss_pred HhhhhhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999987 34 89999998774
Q ss_pred -----ChhhHhHHHHHHHHhhccC---CceEee--cCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009601 215 -----NNYEVGNMIAEAMSKVGRK---GVVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (531)
Q Consensus 215 -----~~~~l~~li~~A~~~v~~~---g~I~v~--~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~ 284 (531)
++++|++|+++|+.+++++ +.|+++ +|++++|| ++++||+|+++|.+| |+.+++||||+++
T Consensus 157 K~~~~~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds-~lv~G~v~dk~~~~~--------m~~~~en~kIll~ 227 (513)
T 3iyg_B 157 KLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADS-YLDEGFLLDKKIGVN--------QPKRIENAKILIA 227 (513)
T ss_pred cccccchHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccce-eEEeeEEEeccccCC--------CceeecCceEEEE
Confidence 5689999999999999987 777763 69999999 999999999999886 6788999999999
Q ss_pred cc--------------ccCCHHHHHH-----------HHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeec
Q 009601 285 DK--------------KITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (531)
Q Consensus 285 d~--------------~i~~~~~l~~-----------~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~ 339 (531)
|+ .|++++++.+ +++++++.|+||||++++|+++++++|..+ +|+||+.
T Consensus 228 ~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~------~I~av~~ 301 (513)
T 3iyg_B 228 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAA------GVMAIEH 301 (513)
T ss_pred cCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHc------CceEEec
Confidence 98 3567777654 689999999999999999999999999865 6899998
Q ss_pred CCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHh
Q 009601 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (531)
Q Consensus 340 ~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~ 416 (531)
|+ +.+|+|||++|||++++ +++++++++||+|+.|+ ++++++++|.||++
T Consensus 302 ~~-----~~~le~ia~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~----------------- 354 (513)
T 3iyg_B 302 AD-----FVGVERLALVTGGEIAS-----TFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVAL----------------- 354 (513)
T ss_pred CC-----HHHHHHHHHHhCCEEec-----ccccCCHhHCCcccEEEEEEECCeEEEEEecCCC-----------------
Confidence 87 47899999999999999 68999999999999998 67899999999875
Q ss_pred hhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCC
Q 009601 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (531)
Q Consensus 417 ~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~ 495 (531)
+++|||+|||+|+.+++|+||+++||||++|++++++ +|||||++|++++.+|++++.+.+
T Consensus 355 ------------------~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~ 416 (513)
T 3iyg_B 355 ------------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTP 416 (513)
T ss_pred ------------------CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhhccC
Confidence 4699999999999999999999999999999999995 999999999999999999988888
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 496 ~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 417 g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 450 (513)
T 3iyg_B 417 GKEA-VAMESYAKALRMLPTIIADNAGYDSADLVA 450 (513)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 8877 899999999999999999999999998875
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-87 Score=730.96 Aligned_cols=398 Identities=20% Similarity=0.305 Sum_probs=365.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |+|++++|++||+++||||
T Consensus 10 ~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~~~GDGT 85 (515)
T 3iyg_H 10 IPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPA----AKTLVDIAKSQDAEVGDGT 85 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHH----HHHHHHHHHHhhceeCcch
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--c----h-hhHHhhhhccC------Chhh
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--D----S-ELADVAAVSAG------NNYE 218 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~----~-~l~~va~ts~~------~~~~ 218 (531)
||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++ + . .|.++|+||++ ++++
T Consensus 86 TtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s~~~~~ 165 (515)
T 3iyg_H 86 TSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAF 165 (515)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHhcCCcccccHHH
Confidence 99999999999999999999999999999999999999999999999984 4 3 56899998874 5789
Q ss_pred HhHHHHHHHHhhccC---CceEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc------
Q 009601 219 VGNMIAEAMSKVGRK---GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK------ 287 (531)
Q Consensus 219 l~~li~~A~~~v~~~---g~I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~------ 287 (531)
|++|+++|+.+++.+ +.|++ .+|+++.|+ ++++||+|+++|.||||+++ +.+++||||+++|++
T Consensus 166 i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds-~lv~G~~~dk~~~~p~~~~~----p~~~en~kIll~~~~Le~~k~ 240 (515)
T 3iyg_H 166 FAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEES-QLVAGVAFKKTFSYAGFEMQ----PKKYHNPMIALLNVELELKAE 240 (515)
T ss_pred HHHHHHHHHHHhcccCCcceEEEEecCCCCccce-EEEeeeEEecCccCcccccC----CccccccEEEEEccccccccc
Confidence 999999999999876 67766 368899999 99999999999999999764 447999999999995
Q ss_pred -------cCCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccch
Q 009601 288 -------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (531)
Q Consensus 288 -------i~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~ 349 (531)
|++++++ .++++++.+.|+||||++++|++.++++|.++ | |+ .++++++.+
T Consensus 241 e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~---g---I~-----~v~~~~k~~ 309 (515)
T 3iyg_H 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADR---D---MF-----CAGRVPEED 309 (515)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHc---C---Cc-----ccccccHHH
Confidence 6777776 56699999999999999999999888877543 3 34 346788999
Q ss_pred HHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009601 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (531)
Q Consensus 350 L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l 426 (531)
|+|||++|||++++ +++++++++||+|+.|++. ++++++|+||+++
T Consensus 310 leria~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-------------------------- 358 (515)
T 3iyg_H 310 LKRTMMACGGSIQT-----SVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA-------------------------- 358 (515)
T ss_pred HHHHHHHhCCEEee-----ccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCC--------------------------
Confidence 99999999999999 5899999999999999864 7899999999863
Q ss_pred HHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHH
Q 009601 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (531)
Q Consensus 427 ~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~ 505 (531)
..|||+|||+|+++++|+||+++||||++|++++++ +|||||++|++++.+|++++.+.++.+| +++++
T Consensus 359 ---------~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq-~~i~~ 428 (515)
T 3iyg_H 359 ---------KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQ-LLIGA 428 (515)
T ss_pred ---------ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHHHHHhcCChHHH-HHHHH
Confidence 589999999999999999999999999999999996 9999999999999999999888888877 89999
Q ss_pred HHHHHHHHHHHHHHHcCCCcccccc
Q 009601 506 VKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 506 ~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
|++||+.||++||+|||+|+.+++.
T Consensus 429 ~a~ALe~ip~~La~NaG~d~~~~v~ 453 (515)
T 3iyg_H 429 YAKALEIIPRQLCDNAGFDATNILN 453 (515)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 9999999999999999999998875
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-87 Score=736.16 Aligned_cols=401 Identities=26% Similarity=0.374 Sum_probs=371.1
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhc
Q 009601 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (531)
Q Consensus 64 k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 143 (531)
.+..+| .++|..|+.||+.|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++|
T Consensus 12 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~q 85 (543)
T 3ruv_A 12 MKRYMG--RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQ 85 (543)
T ss_dssp EEEEET--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHH----HHHHHHHHHHH
T ss_pred cchhcc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHH----HHHHHHHHHHH
Confidence 455677 899999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--ch-hhHHhhhhccCC-----
Q 009601 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN----- 215 (531)
Q Consensus 144 d~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~----- 215 (531)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++ +. .|.++|+||+++
T Consensus 86 d~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~L~~va~tsl~sK~~~~ 165 (543)
T 3ruv_A 86 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEK 165 (543)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHHHHTCGGG
T ss_pred HhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcccccch
Confidence 9999999999999999999999999999999999999999999999999999999987 45 899999999864
Q ss_pred -hhhHhHHHHHHHHhhccC-Cc-----eEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecc
Q 009601 216 -NYEVGNMIAEAMSKVGRK-GV-----VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDK 286 (531)
Q Consensus 216 -~~~l~~li~~A~~~v~~~-g~-----I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~ 286 (531)
+++|++|+++|+.+++++ |. |++ .+|+++.|+ ++++||+|+++|.||| |+++++||||+++|+
T Consensus 166 ~~~~i~~livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~~~n~kIll~~~ 237 (543)
T 3ruv_A 166 AKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT-ELIKGVLVDKERVSAQ-------MPKKVTDAKIALLNC 237 (543)
T ss_dssp CCHHHHHHHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGC-EEESSEEESCCCSCTT-------SCSEEEEEEEEEESS
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccceEEEEEcCCCCcccc-eeecceEEeccccCcc-------ccccccCcEEEEEcc
Confidence 789999999999999987 65 666 389999998 9999999999999997 466799999999999
Q ss_pred c-------------cCCHHH-----------HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCc
Q 009601 287 K-------------ITNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGF 342 (531)
Q Consensus 287 ~-------------i~~~~~-----------l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~ 342 (531)
+ |+++++ +.++++++.+.|+||||++++|+++++++|.++ +|++|+
T Consensus 238 ~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~------gI~~v~---- 307 (543)
T 3ruv_A 238 AIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKE------GIVAAR---- 307 (543)
T ss_dssp CBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHT------TCEEEC----
T ss_pred cccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHc------CcEEEe----
Confidence 5 566665 567789999999999999999999999999864 356665
Q ss_pred CccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhh
Q 009601 343 GERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 419 (531)
Q Consensus 343 ~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~ 419 (531)
++++.+|+|||++|||++++ +++++++++||+|+.|++. +++++||.||+++
T Consensus 308 -~v~k~~le~ia~~tGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~------------------- 362 (543)
T 3ruv_A 308 -RVKKSDMEKLAKATGANVIA-----AIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP------------------- 362 (543)
T ss_dssp -SCCHHHHHHHHHHHCCCEES-----CGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSC-------------------
T ss_pred -eCCHHHHHHHHHHhCCceec-----ccccCCHHHCCcccEEEEEEeCCceEEEEECCCCC-------------------
Confidence 56799999999999999999 6899999999999999864 8899999999874
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChH
Q 009601 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDE 498 (531)
Q Consensus 420 ~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~e 498 (531)
..+||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.++++.+
T Consensus 363 ----------------~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~e 426 (543)
T 3ruv_A 363 ----------------KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGRE 426 (543)
T ss_dssp ----------------SSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTCCTTH
T ss_pred ----------------ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCcHHHHHHHHHHHHHhhcCChHH
Confidence 579999999999999999999999999999999999 999999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 499 EKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 499 q~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
| +++++|++||+.||++||+|||+|+.+++.
T Consensus 427 q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 457 (543)
T 3ruv_A 427 Q-LAVRAFADALEVIPRTLAENAGLDAIEILV 457 (543)
T ss_dssp H-HHHHHHHHHHTHHHHHHHHHTTCCHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 7 899999999999999999999999998864
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-87 Score=736.60 Aligned_cols=402 Identities=24% Similarity=0.363 Sum_probs=375.6
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
++++.|| .++|..|+.||..|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ |||++++|++
T Consensus 15 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 88 (548)
T 1q3q_A 15 GTQRYVG--RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKT 88 (548)
T ss_dssp TCEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHH----HHHHHHHHHH
T ss_pred Ccceech--HHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchH----HHHHHHHHHh
Confidence 4778898 999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc--h-hhHHhhhhccC-----
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAG----- 214 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~----- 214 (531)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++. . +|.++|+|+++
T Consensus 89 qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~ 168 (548)
T 1q3q_A 89 QDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAE 168 (548)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSCSSTTG
T ss_pred cCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999874 4 89999998753
Q ss_pred -ChhhHhHHHHHHHHhhccC--C-------ceEee--cCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009601 215 -NNYEVGNMIAEAMSKVGRK--G-------VVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (531)
Q Consensus 215 -~~~~l~~li~~A~~~v~~~--g-------~I~v~--~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIl 282 (531)
++++|++|+++|+.+++++ | .|+++ +|++++|| ++++||+|+++|.|||| +.+++||||+
T Consensus 169 ~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~ien~kIl 240 (548)
T 1q3q_A 169 SHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEES-ELVRGVVIDKEVVHPRM-------PKRVENAKIA 240 (548)
T ss_dssp GGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGC-EEESSEEESCCCSSTTS-------CSEESSEEEE
T ss_pred cchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccce-EEEeeEEEeccCCCCCC-------cceecCCEEE
Confidence 5789999999999999876 4 67775 99999999 99999999999999985 4678999999
Q ss_pred eeccc-------------cCCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEee
Q 009601 283 LVDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (531)
Q Consensus 283 l~d~~-------------i~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk 338 (531)
++|++ |++++++ .++++++.+.|+||||++++|+++++++|..|+ |+||+
T Consensus 241 l~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~ 314 (548)
T 1q3q_A 241 LINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYG------IMAVR 314 (548)
T ss_dssp EECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTT------CEEEC
T ss_pred EEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCC------cEEEc
Confidence 99998 7788875 788999999999999999999999999999874 57764
Q ss_pred cCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009601 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (531)
Q Consensus 339 ~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~ 415 (531)
++++++|+|||++|||++++ +++++++++||+|+.|++. ++++++|+||++
T Consensus 315 -----~~~k~~le~ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~---------------- 368 (548)
T 1q3q_A 315 -----RVKKSDMEKLAKATGAKIVT-----NVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN---------------- 368 (548)
T ss_dssp -----SCCHHHHHHHHHHHCCCCBS-----SGGGCCGGGCEEESEEEEEEETTEEEEEEECCSS----------------
T ss_pred -----cCCHHHHHHHHHHhCCeEec-----ccccCCHHHCCCceEEEEEEecCceEEEEecCCC----------------
Confidence 77899999999999999998 6999999999999999864 899999999976
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccC
Q 009601 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (531)
Q Consensus 416 ~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (531)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.+.
T Consensus 369 -------------------~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~ 429 (548)
T 1q3q_A 369 -------------------PKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV 429 (548)
T ss_dssp -------------------CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 99999999999999999998777
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 430 ~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 464 (548)
T 1q3q_A 430 GGKEA-LAIENFADALKIIPKTLAENAGLDTVEMLV 464 (548)
T ss_dssp CHHHH-HHHHHHHHHTTHHHHHHHHHTTCCHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 77666 899999999999999999999999998875
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-87 Score=733.80 Aligned_cols=402 Identities=22% Similarity=0.361 Sum_probs=370.0
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
+.+..|| .++|..|+.|+..|+++|+|||||+||||||++++|+++|||||+||||+|+++||+ |||++++|++
T Consensus 13 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 86 (543)
T 1a6d_B 13 GTKRESG--KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKT 86 (543)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHH----HHHHHHHHTC
T ss_pred cchhhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchH----HHHHHHHHHh
Confidence 3567888 899999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc--h-hhHHhhhhcc------
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSA------ 213 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~------ 213 (531)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++. . .|.++|+|++
T Consensus 87 qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~va~tsl~sKi~~ 166 (543)
T 1a6d_B 87 QDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSAS 166 (543)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHHHHHHHHTTSGGG
T ss_pred cCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999874 3 8999999875
Q ss_pred CChhhHhHHHHHHHHhhccC--Cc-------eEee--cCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009601 214 GNNYEVGNMIAEAMSKVGRK--GV-------VTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (531)
Q Consensus 214 ~~~~~l~~li~~A~~~v~~~--g~-------I~v~--~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIl 282 (531)
+++++|++|+++|+.+++++ |. |+++ +|++++|+ ++++||+|+++|.|||| +.+++||||+
T Consensus 167 ~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~ien~kIl 238 (543)
T 1a6d_B 167 VAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDT-QLINGIIVDKEKVHPGM-------PDVVKDAKIA 238 (543)
T ss_dssp GGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGC-EEESEEEESCCCSSTTS-------CSEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccce-eEEccEEEecCCCCCCC-------cceecCCeEE
Confidence 35789999999999999876 53 7665 99999999 99999999999999985 5678999999
Q ss_pred eeccc-------------cCCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEee
Q 009601 283 LVDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (531)
Q Consensus 283 l~d~~-------------i~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk 338 (531)
++|++ |++++++ .++++++.+.|+||||++++|+++++++|..++ |+||+
T Consensus 239 l~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~ 312 (543)
T 1a6d_B 239 LLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAG------IYAVR 312 (543)
T ss_dssp EESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTT------CEEEC
T ss_pred EEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCC------eeEec
Confidence 99998 7777765 788999999999999999999999999999874 67775
Q ss_pred cCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009601 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (531)
Q Consensus 339 ~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~ 415 (531)
++++++|+|||++|||++++ +++++++++||+|+.|++ +++++++|+||++
T Consensus 313 -----~v~k~~le~ia~~tGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~---------------- 366 (543)
T 1a6d_B 313 -----RVKKSDMDKLAKATGASIVS-----TIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKN---------------- 366 (543)
T ss_dssp -----SCCHHHHHHHHHHHTCCEES-----CGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESS----------------
T ss_pred -----cCCHHHHHHHHHHhCCceec-----ccccCCHHHCCCceEEEEEEecCceEEEEecCCC----------------
Confidence 77899999999999999998 699999999999999986 4889999999876
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccC
Q 009601 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (531)
Q Consensus 416 ~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (531)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.+.
T Consensus 367 -------------------~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~ 427 (543)
T 1a6d_B 367 -------------------PKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKI 427 (543)
T ss_dssp -------------------SSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHT
T ss_pred -------------------CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHCCCccCCccHHHHHHHHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 99999999999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 428 ~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 462 (543)
T 1a6d_B 428 GGRQQ-LAIEKFADAIEEIPRALAENAGLDPIDILL 462 (543)
T ss_dssp CSSHH-HHHHHHHHHHTHHHHHHHHHHTCCHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 88877 899999999999999999999999998875
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-87 Score=734.44 Aligned_cols=401 Identities=22% Similarity=0.360 Sum_probs=372.3
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
+.++.|| .++|..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |||++++|++
T Consensus 14 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 87 (545)
T 1a6d_A 14 GTQREQG--KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT----AKMIVEVSKA 87 (545)
T ss_dssp ---CEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHH----HHHHHGGGGC
T ss_pred cchhhch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchH----HHHHHHHHHh
Confidence 3567888 999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC-ch-hhHHhhhhcc------C
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DS-ELADVAAVSA------G 214 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~-~~-~l~~va~ts~------~ 214 (531)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++ + +. .|.++|+|++ +
T Consensus 88 qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-~~~~~~l~~va~tsl~sKi~~~ 166 (545)
T 1a6d_A 88 QDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-STDDATLRKIALTALSGKNTGL 166 (545)
T ss_dssp TTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-CCCHHHHHHHHHHHTTTSSCCS
T ss_pred cCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999998 6 44 8999999875 3
Q ss_pred ChhhHhHHHHHHHHhhccC---------CceEee--cCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEee
Q 009601 215 NNYEVGNMIAEAMSKVGRK---------GVVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLL 283 (531)
Q Consensus 215 ~~~~l~~li~~A~~~v~~~---------g~I~v~--~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll 283 (531)
++++|++|+++|+.+++++ +.|+++ +|++++|| ++++||+|+++|.|||| +.+++||||++
T Consensus 167 ~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~ien~kIll 238 (545)
T 1a6d_A 167 SNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDT-QFISGIVIDKEKVHSKM-------PDVVKNAKIAL 238 (545)
T ss_dssp THHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTC-EEESEEEESCCCSCTTS-------CSEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceee-EEEeeEEEeccCCCCCC-------cceecCCEEEE
Confidence 5799999999999999875 367775 99999999 99999999999999985 46789999999
Q ss_pred eccc-------------cCCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeec
Q 009601 284 VDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (531)
Q Consensus 284 ~d~~-------------i~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~ 339 (531)
+|++ |++++++ .++++++.+.|+||||++++|+++++++|+.|+ |+||+
T Consensus 239 ~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~- 311 (545)
T 1a6d_A 239 IDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG------IYAVR- 311 (545)
T ss_dssp ECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHT------CEEEC-
T ss_pred EecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCC------eeEec-
Confidence 9998 6777765 788999999999999999999999999999984 57775
Q ss_pred CCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHh
Q 009601 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (531)
Q Consensus 340 ~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~~ 416 (531)
++++++|+|||++|||++++ +++++++++||+|+.|++. ++++++|+||++
T Consensus 312 ----~~~k~~le~ia~~tGa~iis-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~----------------- 365 (545)
T 1a6d_A 312 ----RVKKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN----------------- 365 (545)
T ss_dssp ----SCCHHHHHHHHHHHCCCEES-----SGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESC-----------------
T ss_pred ----cCCHHHHHHHHHHhCCeeec-----ccccCCHHHCCCceEEEEEEecCceEEEEecCCC-----------------
Confidence 77899999999999999998 6999999999999999864 789999999876
Q ss_pred hhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCC
Q 009601 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (531)
Q Consensus 417 ~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~ 495 (531)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.+.+
T Consensus 366 ------------------~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~ 427 (545)
T 1a6d_A 366 ------------------PKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVG 427 (545)
T ss_dssp ------------------SSCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTSC
T ss_pred ------------------CceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhhccC
Confidence 4699999999999999999999999999999999999 999999999999999999998787
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 496 ~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 428 g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 461 (545)
T 1a6d_A 428 GREQ-LAIEAFAKALEIIPRTLAENAGIDPINTLI 461 (545)
T ss_dssp HHHH-HHHHHHHHHHTHHHHHHHHHHTSCHHHHHH
T ss_pred ccHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7766 899999999999999999999999998875
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-88 Score=738.35 Aligned_cols=406 Identities=21% Similarity=0.302 Sum_probs=372.7
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
.|+..|| .++|..|+.||+.|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++
T Consensus 11 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----akll~e~a~~ 84 (528)
T 3p9d_D 11 FKNKEKP--QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPV----ARMLVEVSAA 84 (528)
T ss_dssp SCBCCCH--HHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTT----HHHHHHHHHH
T ss_pred cchhcch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHH----HHHHHHHHHH
Confidence 5788899 999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--ch-hhHHhhhhccCC----
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN---- 215 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~---- 215 (531)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++ +. .|.++|+||+++
T Consensus 85 qd~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~l~~va~tsl~sK~~~ 164 (528)
T 3p9d_D 85 QDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVS 164 (528)
T ss_dssp HHHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCHHHHHHHHHHHSCSSSCS
T ss_pred hhhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999987 45 899999999864
Q ss_pred --hhhHhHHHHHHHHhhcc--CCceEe-------ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009601 216 --NYEVGNMIAEAMSKVGR--KGVVTL-------EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (531)
Q Consensus 216 --~~~l~~li~~A~~~v~~--~g~I~v-------~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~ 284 (531)
+++|++|+++|+.++++ +|.|.+ .+|++++|| ++++||+|+++|.|||| |+++++||||+++
T Consensus 165 ~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~~~~------m~~~ien~kIll~ 237 (528)
T 3p9d_D 165 QYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDT-EMIDGVVLTQTAIKSAG------GPTRKEKAKIGLI 237 (528)
T ss_dssp TTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCC-EEESSCBCCCCCCCSSS------CCSEESSEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccce-EEEeeeEEeecccCccc------CcccccCceEEEE
Confidence 79999999999999987 454333 359999998 99999999999999985 7888999999999
Q ss_pred ccccC-------------CHHH-----------HHHHHHHHHhcCCCEEEEeccc-----hHHHHHHHHHHhhcccceEE
Q 009601 285 DKKIT-------------NARD-----------LINVLEDAIRGAYPILIIAEDI-----EQEALATLVVNKLRGALKIA 335 (531)
Q Consensus 285 d~~i~-------------~~~~-----------l~~~le~i~~~g~~lvI~~~~I-----~~~al~~L~~n~~~g~~~i~ 335 (531)
|++|+ ++++ +.++++++.+.|+||||++++| +++++++|..+ +|+
T Consensus 238 ~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~------~I~ 311 (528)
T 3p9d_D 238 QFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKL------NIM 311 (528)
T ss_dssp CCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTT------SCC
T ss_pred eccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHc------CcE
Confidence 99865 4443 6788999999999999999999 99999999876 467
Q ss_pred EeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHH
Q 009601 336 ALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRT 412 (531)
Q Consensus 336 aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~ 412 (531)
||+ ++++.+|+|||++|||++++ +++++++++||+|+.|++ +++++++|.+|....
T Consensus 312 av~-----~~~k~~le~ia~~tGa~ii~-----~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~----------- 370 (528)
T 3p9d_D 312 VVK-----DIEREEIEFLSKGLGCKPIA-----DIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNN----------- 370 (528)
T ss_dssp EEE-----CCCTHHHHHHHHHHTCCCCS-----CSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGG-----------
T ss_pred EEE-----eCCHHHHHHHHHHHCCEEec-----ccccCCHHHCCcccEEEEEEECCEEEEEEEcccccC-----------
Confidence 777 55689999999999999999 578999999999999984 577889999886210
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHh
Q 009601 413 LIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIK 491 (531)
Q Consensus 413 ~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~ 491 (531)
.+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++
T Consensus 371 ---------------------~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~ 429 (528)
T 3p9d_D 371 ---------------------ARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEA 429 (528)
T ss_dssp ---------------------GCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHHHCC
T ss_pred ---------------------CCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHHh
Confidence 15799999999999999999999999999999999999 99999999999999999998
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 492 ETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 492 ~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
.+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 430 ~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~ 467 (528)
T 3p9d_D 430 RSMEGVQA-FIWQEFASALEVIPTTLAENAGLNSIKVVT 467 (528)
T ss_dssp TTSCHHHH-TTHHHHHHHHTHHHHHHHHTTSSCHHHHHH
T ss_pred hccChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 77777776 899999999999999999999999998864
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-87 Score=727.67 Aligned_cols=405 Identities=21% Similarity=0.301 Sum_probs=369.6
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcc
Q 009601 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (531)
Q Consensus 65 ~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 144 (531)
+-.|| .++|..|+.|+..|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||+ |+|++++|++||
T Consensus 4 ~~~~g--~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~----akll~~~a~~qd 77 (529)
T 3iyg_A 4 DRSTG--EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKVLCELADLQD 77 (529)
T ss_pred chhch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChH----HHHHHHHHHHhh
Confidence 44577 899999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh-cccccC--ch-hhHHhhhhccC------
Q 009601 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE--DS-ELADVAAVSAG------ 214 (531)
Q Consensus 145 ~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~-~s~~v~--~~-~l~~va~ts~~------ 214 (531)
+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++ ++++++ +. .|.++|+||++
T Consensus 78 ~e~GDGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~~~~ 157 (529)
T 3iyg_A 78 KEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGI 157 (529)
T ss_pred hhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999999999999999999999999999 999987 44 89999999874
Q ss_pred ChhhHhHHHHHHHHhhc---cCC-----c--eEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEe
Q 009601 215 NNYEVGNMIAEAMSKVG---RKG-----V--VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (531)
Q Consensus 215 ~~~~l~~li~~A~~~v~---~~g-----~--I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIl 282 (531)
++++|++|+++|+.+++ ++| . |++ .+|++++|| ++++||+|+++|.||+ |+..++||||+
T Consensus 158 ~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIl 229 (529)
T 3iyg_A 158 NGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMES-MLINGYALNCVVGSQG-------MPKRIVNAKIA 229 (529)
T ss_pred cHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccce-EEEeeeEEecCccccc-------CCcccCCceEE
Confidence 47899999999999997 344 2 444 589999999 9999999999999997 45578999999
Q ss_pred eecccc-------------CCHHH-----------HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEee
Q 009601 283 LVDKKI-------------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (531)
Q Consensus 283 l~d~~i-------------~~~~~-----------l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk 338 (531)
++|+++ +++++ +.++++++.+.|+||||++++|+++++++|..|+ |+||+
T Consensus 230 ll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~g------I~av~ 303 (529)
T 3iyg_A 230 CLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAG------AMAVR 303 (529)
T ss_pred EecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC------Cceec
Confidence 999974 34433 5677899999999999999999999999999983 56666
Q ss_pred cCCcCccccchHHHHHHHhCCeEEecCCCcc-ccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHH
Q 009601 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLA-LDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLI 414 (531)
Q Consensus 339 ~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~-l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l 414 (531)
++++++|+|||++|||+++++..+++ .+++++++||+|+.|+ ++++++++|.||+++
T Consensus 304 -----~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-------------- 364 (529)
T 3iyg_A 304 -----RVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKAR-------------- 364 (529)
T ss_pred -----cCCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCC--------------
Confidence 67799999999999999999755544 3456789999999998 789999999999863
Q ss_pred HhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhcc
Q 009601 415 ENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKET 493 (531)
Q Consensus 415 ~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~ 493 (531)
++|||+|||+|+.+++|.||+++||||++|+++++| +|||||++||++|.+|++++.+
T Consensus 365 ---------------------~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~~ 423 (529)
T 3iyg_A 365 ---------------------TSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATS 423 (529)
T ss_pred ---------------------ceEEEEECCchHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhhh
Confidence 589999999999999999999999999999999999 9999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 494 LDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 494 ~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 424 ~~g~eq-~~i~~fa~ALe~ip~~La~NaG~d~~~~v~ 459 (529)
T 3iyg_A 424 MGSREQ-LAIAEFARSLLVIPNTLAVNAAQDSTDLVA 459 (529)
T ss_pred cCChHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 888888 899999999999999999999999998875
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-86 Score=721.28 Aligned_cols=401 Identities=22% Similarity=0.334 Sum_probs=365.5
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhc
Q 009601 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (531)
Q Consensus 64 k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 143 (531)
++-.|| .++|..|+.||..|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++|
T Consensus 3 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~----Akll~~~a~~q 76 (515)
T 3iyg_E 3 KSRLMG--LEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI----AKLMVELSKSQ 76 (515)
T ss_pred chhhch--HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHH----HHHHHHHHHHh
Confidence 345678 999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc----h-hhHHhhhhccCC---
Q 009601 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED----S-ELADVAAVSAGN--- 215 (531)
Q Consensus 144 d~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~----~-~l~~va~ts~~~--- 215 (531)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++. . +|.++|+||+++
T Consensus 77 d~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i 156 (515)
T 3iyg_E 77 DDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVV 156 (515)
T ss_pred hhhhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999988753 3 899999999875
Q ss_pred ---hhhHhHHHHHHHHhhccC-------CceEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEee
Q 009601 216 ---NYEVGNMIAEAMSKVGRK-------GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLL 283 (531)
Q Consensus 216 ---~~~l~~li~~A~~~v~~~-------g~I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll 283 (531)
.+.|++++++|+..+.+. +.|++ .+|++++|+ ++++||+|+++|.||||+ ..+++|+|++
T Consensus 157 ~~~~~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds-~lv~G~~~dk~~~~~~m~-------~~~~~~kIal 228 (515)
T 3iyg_E 157 NSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDT-KLIKGVIVDKDFSHPQMP-------KQVEDAKIAI 228 (515)
T ss_pred hHHHHHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccc-eEEeeEEEeccccccccc-------ccCCCceEEE
Confidence 578999999999998652 23444 589999999 999999999999999864 4467888888
Q ss_pred eccc-------------cCCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeec
Q 009601 284 VDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (531)
Q Consensus 284 ~d~~-------------i~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~ 339 (531)
++++ |++++++ .++++++.+.|+||||++++|+++++++|+.|+ +.+|+.
T Consensus 229 l~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~------I~~v~~ 302 (515)
T 3iyg_E 229 LTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQND------LPAVRW 302 (515)
T ss_pred EcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCC------CEEEec
Confidence 8775 4566665 678999999999999999999999999999985 456664
Q ss_pred CCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE-----eCceEEEEcCCCChhhHHHHHHHHHHHH
Q 009601 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL-----TKDTTTIVGDGSTQDAVSKRVAQIRTLI 414 (531)
Q Consensus 340 ~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i-----~~~~~~~~~g~~~~~~i~~ri~~l~~~l 414 (531)
+++.+|+|||++|||++++ +++++++++||+|+.|++ +++++++|+||+++
T Consensus 303 -----v~k~~le~ia~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~-------------- 358 (515)
T 3iyg_E 303 -----VGGPEIELIAIATGGRIVP-----RFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS-------------- 358 (515)
T ss_pred -----cCHHHHHHHHHHhCCEEec-----ccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCC--------------
Confidence 4589999999999999998 689999999999999986 34899999999863
Q ss_pred HhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhcc
Q 009601 415 ENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKET 493 (531)
Q Consensus 415 ~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~ 493 (531)
..|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.+
T Consensus 359 ---------------------~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~~~~~~ 417 (515)
T 3iyg_E 359 ---------------------RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADK 417 (515)
T ss_pred ---------------------ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999 9999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 494 LDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 494 ~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 418 ~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 453 (515)
T 3iyg_E 418 CPTLEQ-YAMRAFADALEVIPMALAENSGMNPIQTMT 453 (515)
T ss_pred CCcHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888877 899999999999999999999999998875
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-86 Score=721.34 Aligned_cols=398 Identities=22% Similarity=0.307 Sum_probs=365.0
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccc
Q 009601 67 HFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDL 146 (531)
Q Consensus 67 ~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~ 146 (531)
.+| .++|..|+.||..|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++||++
T Consensus 7 ~~g--~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----akll~~~a~~qd~~ 80 (518)
T 3iyg_D 7 DKP--AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPA----ARMLVELSKAQDIE 80 (518)
T ss_pred hhh--HHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHH----HHHHHHHHHHhhhh
Confidence 345 789999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC--ch-hhHHhhhhccCCh------h
Q 009601 147 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGNN------Y 217 (531)
Q Consensus 147 ~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~--~~-~l~~va~ts~~~~------~ 217 (531)
+||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++ +. .|.++|+||++++ +
T Consensus 81 ~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~vA~tsl~sK~~~~~~~ 160 (518)
T 3iyg_D 81 AGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSS 160 (518)
T ss_pred hCCCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCChHHHHHHhHhhhccccchhhHH
Confidence 9999999999999999999999999999999999999999999999999999987 44 8999999999864 8
Q ss_pred hHhHHHHHHHHhhcc---CCc-----eEee--cCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc
Q 009601 218 EVGNMIAEAMSKVGR---KGV-----VTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK 287 (531)
Q Consensus 218 ~l~~li~~A~~~v~~---~g~-----I~v~--~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~ 287 (531)
+|++|+++|+.++++ +|. |+++ +|++..|+ ++++||+|+++|.| . ||..++||+|++++++
T Consensus 161 ~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds-~lv~G~~~dk~~~~-~-------mp~~i~n~kIlll~~~ 231 (518)
T 3iyg_D 161 LLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDC-ELVEGLVLTQKVAN-S-------GITRVEKAKIGLIQFC 231 (518)
T ss_pred HHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhh-eEeccEEEeccccc-C-------CCccccCceEEEEEee
Confidence 999999999999985 554 5553 78999998 99999999999987 2 4556788999998886
Q ss_pred c-------------CCHH-----------HHHHHHHHHHhcCCCEEEE-----eccchHHHHHHHHHHhhcccceEEEee
Q 009601 288 I-------------TNAR-----------DLINVLEDAIRGAYPILII-----AEDIEQEALATLVVNKLRGALKIAALK 338 (531)
Q Consensus 288 i-------------~~~~-----------~l~~~le~i~~~g~~lvI~-----~~~I~~~al~~L~~n~~~g~~~i~aVk 338 (531)
+ ++++ ++.++++++.+.|+||||+ +++|+++++++|..+ +|+||+
T Consensus 232 Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~------~I~av~ 305 (518)
T 3iyg_D 232 LSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKM------KIMVVK 305 (518)
T ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHc------CcEEEe
Confidence 4 4454 4678899999999999999 899999999999986 579999
Q ss_pred cCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eC-ceEEEEcCCCChhhHHHHHHHHHHHH
Q 009601 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TK-DTTTIVGDGSTQDAVSKRVAQIRTLI 414 (531)
Q Consensus 339 ~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~-~~~~~~~g~~~~~~i~~ri~~l~~~l 414 (531)
.|+ +.+|+|||++|||++++ +++++++++||+|+.|++ ++ +++++|+||++
T Consensus 306 ~~~-----~~~le~ia~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~--------------- 360 (518)
T 3iyg_D 306 DIE-----REDIEFICKTIGTKPVA-----HVDQFTADMLGSAELAEEVSLNGSGKLIKITGCAS--------------- 360 (518)
T ss_pred cCC-----HHHHHHHHHHhCCEEec-----ccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCC---------------
Confidence 887 57899999999999999 589999999999999986 35 68899999864
Q ss_pred HhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhcc
Q 009601 415 ENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKET 493 (531)
Q Consensus 415 ~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~ 493 (531)
++++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.+
T Consensus 361 -------------------~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~ 421 (518)
T 3iyg_D 361 -------------------PGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRT 421 (518)
T ss_pred -------------------CCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHHHHhhc
Confidence 25799999999999999999999999999999999999 9999999999999999999888
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 494 LDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 494 ~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
.++.+| +++++|++||+.||++||+|||+||.+++.
T Consensus 422 ~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 457 (518)
T 3iyg_D 422 LSGMES-YCIRAFADAMEVIPSTLAENAGLNPISTVT 457 (518)
T ss_pred CChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 888877 899999999999999999999999998875
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-87 Score=733.18 Aligned_cols=403 Identities=19% Similarity=0.289 Sum_probs=367.9
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhc
Q 009601 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (531)
Q Consensus 64 k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 143 (531)
.+-.+| .+++..|+.||+.|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++|
T Consensus 17 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~----Akll~e~a~~q 90 (550)
T 3p9d_G 17 TDASQG--KGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPA----AKTLVDISRAQ 90 (550)
T ss_dssp CCEEES--HHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHH----HHHHHHHHHHH
T ss_pred cchhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHH----HHHHHHHHHHh
Confidence 455677 899999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc-----h-hhHHhhhhccC---
Q 009601 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAG--- 214 (531)
Q Consensus 144 d~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~--- 214 (531)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++. . .|.++|+||++
T Consensus 91 d~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~L~~vA~tsl~sK~ 170 (550)
T 3p9d_G 91 DAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKL 170 (550)
T ss_dssp HTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCCC------CHHHHHHHHHHHTT
T ss_pred hhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999998853 4 79999999864
Q ss_pred ---ChhhHhHHHHHHHHhhcc-C------CceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009601 215 ---NNYEVGNMIAEAMSKVGR-K------GVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (531)
Q Consensus 215 ---~~~~l~~li~~A~~~v~~-~------g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~ 284 (531)
++++|++|++||+.++++ + +++++ +|++++|| ++++||+|+++|.||||.+ |+..++||+|+++
T Consensus 171 ~~~~~~~i~~livdAv~~V~~~~~dl~~I~Vikv-~Gg~~~ds-~lv~G~~~dk~~~s~yf~~----~~~~~en~kIll~ 244 (550)
T 3p9d_G 171 IHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKI-PGGAMEES-LFINGVAFKKTFSYAGFEQ----QPKKFNNPKILSL 244 (550)
T ss_dssp TGGGHHHHHHHHHHHHHHCCSSSCCGGGCCCCBC-CSSCGGGC-CCCSSEEECCCSSCTTCSC----SCSCCSSCCEEEE
T ss_pred ccccHhHHHHHHHHHHHHhCccccCchheeEEEe-cCCCccce-eEEeeEEEecccccccccc----CcccccCceEEEe
Confidence 478999999999999984 3 45555 69999999 9999999999999999975 5556999999999
Q ss_pred ccc-------------cCCHHHHHH-----------HHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecC
Q 009601 285 DKK-------------ITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (531)
Q Consensus 285 d~~-------------i~~~~~l~~-----------~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~ 340 (531)
|++ |++++++.+ +++++++.|++|||++++|++.++++|.++ +|+++
T Consensus 245 ~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~------gI~~v--- 315 (550)
T 3p9d_G 245 NVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADR------NIFCA--- 315 (550)
T ss_dssp CSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGG------TCEEE---
T ss_pred ccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHc------CCccc---
Confidence 998 456655544 688899999999999999999998877643 34544
Q ss_pred CcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009601 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (531)
Q Consensus 341 ~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~ 417 (531)
+++++.+|++||++|||++++ +++++++++||+|+.|++ +++++++|.||++
T Consensus 316 --~~v~k~~lerIa~~tGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~------------------ 370 (550)
T 3p9d_G 316 --GRVSADDMNRVIQAVGGSIQS-----TTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQ------------------ 370 (550)
T ss_dssp --ECCCTTHHHHHHHHTCCCCBS-----SGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTT------------------
T ss_pred --cCcCHHHHHHHHHHhCCceec-----chhhCCHHHcCCceEEEEEEeCCeEEEEEecCCC------------------
Confidence 577899999999999999998 699999999999999986 6889999999976
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCC
Q 009601 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDN 496 (531)
Q Consensus 418 ~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~ 496 (531)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.++++
T Consensus 371 -----------------~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g 433 (550)
T 3p9d_G 371 -----------------AKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAG 433 (550)
T ss_dssp -----------------CCCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCS
T ss_pred -----------------CceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCCh
Confidence 3689999999999999999999999999999999999 9999999999999999999888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 497 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 497 ~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 434 ~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~ 466 (550)
T 3p9d_G 434 KQQ-MIINAFAKALEVIPRQLCENAGFDAIEILN 466 (550)
T ss_dssp TTH-HHHHHHHHHHTHHHHHHHHTSCSCHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 887 899999999999999999999999998875
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-87 Score=731.73 Aligned_cols=401 Identities=22% Similarity=0.333 Sum_probs=369.4
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeec-CCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLES-KYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~-~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
.++..|| .++|..|+.||+.|+++|+|||||+||||||++ ++|+|+|||||+||||+|+++||. |||++++|+
T Consensus 9 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~----Akll~e~a~ 82 (527)
T 3p9d_B 9 QVTEERA--ENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPA----AKVLVNISK 82 (527)
T ss_dssp CEEEEES--HHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHH----HHHHHHHHH
T ss_pred cchhhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHH----HHHHHHHHH
Confidence 5788999 999999999999999999999999999999999 899999999999999999999997 999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHhcccccCc-----h-hhHHhhhhccC
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAA-GANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAG 214 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~-Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~-~l~~va~ts~~ 214 (531)
+||+++||||||+||||++||+++.+++++ |+||+.|++||++|++.++++|++++++++. . +|.++|+||++
T Consensus 83 ~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~vA~tSl~ 162 (527)
T 3p9d_B 83 VQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLS 162 (527)
T ss_dssp HHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHhccc
Confidence 999999999999999999999999999999 9999999999999999999999999999875 4 89999999987
Q ss_pred C------hhhHhHHHHHHHHhhccCC---ceEee--cCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEee
Q 009601 215 N------NYEVGNMIAEAMSKVGRKG---VVTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLL 283 (531)
Q Consensus 215 ~------~~~l~~li~~A~~~v~~~g---~I~v~--~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll 283 (531)
+ +++|++|+++|+.++++++ .|+++ .|+++.|+ ++++||+|+++|.||| +..++||+|++
T Consensus 163 sK~~~~~~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds-~lv~G~~~dk~~~~~~--------p~~~~n~kIll 233 (527)
T 3p9d_B 163 SKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDS-FLDEGFILAKKFGNNQ--------PKRIENAKILI 233 (527)
T ss_dssp TSGGGGGHHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCC-CEESSCCCSCCCSSSC--------CSCCSSCEEEE
T ss_pred cCcccchHHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCcccc-EEEEeEEEecccCCCC--------CeeeecceEEE
Confidence 5 6899999999999999987 67764 69999999 9999999999999996 23468999999
Q ss_pred ecccc--------------CCHHHH-----------HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEee
Q 009601 284 VDKKI--------------TNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 338 (531)
Q Consensus 284 ~d~~i--------------~~~~~l-----------~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk 338 (531)
+++++ ++++++ ++.++++.+.|+||||++++|+++++++|..+ +|++|+
T Consensus 234 l~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~------~i~av~ 307 (527)
T 3p9d_B 234 ANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDL------GINSIE 307 (527)
T ss_dssp ECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHT------CBCCCC
T ss_pred eccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHC------CCEEEe
Confidence 88863 445554 57889999999999999999999999999987 468888
Q ss_pred cCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHH
Q 009601 339 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (531)
Q Consensus 339 ~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~ 415 (531)
.|+ +.+|++||++|||++++ +++++++++||+|+.|+ ++++++++|.||++
T Consensus 308 ~~~-----~~dle~ia~~tGa~iv~-----~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~---------------- 361 (527)
T 3p9d_B 308 HAD-----FEGVERLALVTGGEVVS-----TFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKA---------------- 361 (527)
T ss_dssp CCH-----HHHHHHHHHHTCCCCCS-----TTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCC----------------
T ss_pred cCC-----HHHHHHHHHHhCCEEec-----chhhCCHHHCCCCcEEEEEEecceEEEEEECCCC----------------
Confidence 665 67899999999999998 58899999999999998 57899999999875
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccC
Q 009601 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (531)
Q Consensus 416 ~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (531)
+++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.+.
T Consensus 362 -------------------~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~ 422 (527)
T 3p9d_B 362 -------------------GEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNI 422 (527)
T ss_dssp -------------------SCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCCCEEETTTHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999999999 99999999999999999998877
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 423 ~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~ 457 (527)
T 3p9d_B 423 DGKKS-LAVEAFARALRQLPTILADNAGFDSSELVS 457 (527)
T ss_dssp CSHHH-HHHHHHHHHHHHHHHHHHHHHTSCSHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 78877 899999999999999999999999998875
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-86 Score=726.83 Aligned_cols=407 Identities=23% Similarity=0.348 Sum_probs=367.7
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhc
Q 009601 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (531)
Q Consensus 64 k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 143 (531)
++..|| .++|..|+.||+.|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |||++++|++|
T Consensus 38 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~q 111 (562)
T 3p9d_E 38 KKRQHG--LEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEI----AKLLVQLSKSQ 111 (562)
T ss_dssp CSCSHH--HHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHH----HHHHHHHHHHH
T ss_pred ceecch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHH----HHHHHHHHHHH
Confidence 678888 999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc-------hhhHHhhhhccCC-
Q 009601 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-------SELADVAAVSAGN- 215 (531)
Q Consensus 144 d~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~-------~~l~~va~ts~~~- 215 (531)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++. +.|.++|+||+++
T Consensus 112 d~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e~L~~vA~tSl~sK 191 (562)
T 3p9d_E 112 DDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSK 191 (562)
T ss_dssp HHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHHHHHHHHHHHHSSS
T ss_pred HhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999988864 2699999998864
Q ss_pred -----hhhHhHHHHHHHHhhccC-------CceEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeE
Q 009601 216 -----NYEVGNMIAEAMSKVGRK-------GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKL 281 (531)
Q Consensus 216 -----~~~l~~li~~A~~~v~~~-------g~I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kI 281 (531)
.++|+++++||+..+.+. +.|++ .+|++++|| ++++||+|+++|.||||+++.+ .+..+++|+|
T Consensus 192 ~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds-~lveGmv~dk~~~sp~m~~~~~-~~~~~~~~kI 269 (562)
T 3p9d_E 192 IVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDS-KLINGVILDKDFSHPQMPKCVL-PKEGSDGVKL 269 (562)
T ss_dssp TTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGC-EEESSEEESSCCCTTSCCC------TTCSSCEE
T ss_pred hhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhh-ceeeeEEEecCCCCCCcCcccc-cccccccceE
Confidence 578999999999998752 23443 589999999 9999999999999999876432 1223479999
Q ss_pred eeecccc-------------CCHHH-----------HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEe
Q 009601 282 LLVDKKI-------------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAAL 337 (531)
Q Consensus 282 ll~d~~i-------------~~~~~-----------l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aV 337 (531)
+++++++ +++++ +.++++++++.|+||||++++|+++++++|..|++ .+|
T Consensus 270 all~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I------~~v 343 (562)
T 3p9d_E 270 AILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDL------PAV 343 (562)
T ss_dssp CEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTC------CCE
T ss_pred EEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCC------EEE
Confidence 9988863 45555 57889999999999999999999999999998854 455
Q ss_pred ecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE-----eCceEEEEcCCCChhhHHHHHHHHHH
Q 009601 338 KAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL-----TKDTTTIVGDGSTQDAVSKRVAQIRT 412 (531)
Q Consensus 338 k~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i-----~~~~~~~~~g~~~~~~i~~ri~~l~~ 412 (531)
+ ++++.+|+|||++|||++++ +++++++++||+|+.|++ +++++++|+||+++
T Consensus 344 ~-----~v~k~~le~ia~~TGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~------------ 401 (562)
T 3p9d_E 344 R-----WVGGQELEHIAISTNGRIVP-----RFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKET------------ 401 (562)
T ss_dssp E-----CCCTTTHHHHHHHHCCCEEE-----SSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCC------------
T ss_pred e-----ccCHHHHHHHHHHhCCEEEe-----ccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCC------------
Confidence 5 44589999999999999999 689999999999999997 35899999999863
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHh
Q 009601 413 LIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIK 491 (531)
Q Consensus 413 ~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~ 491 (531)
..|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++
T Consensus 402 -----------------------~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~ 458 (562)
T 3p9d_E 402 -----------------------KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEA 458 (562)
T ss_dssp -----------------------SCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHH
T ss_pred -----------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999 99999999999999999998
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 492 ETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 492 ~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
.+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 459 ~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~ 496 (562)
T 3p9d_E 459 DKQRGIDQ-YAFRGFAQALDTIPMTLAENSGLDPIGTLS 496 (562)
T ss_dssp HTTCTTHH-HHHHHHHHHHTHHHHHHHHTTTSCHHHHHH
T ss_pred ccCccHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888877 899999999999999999999999998874
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-85 Score=713.81 Aligned_cols=395 Identities=20% Similarity=0.309 Sum_probs=363.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |||++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~e~GDGT 83 (515)
T 3iyg_G 8 RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPA----AKSMIEISRTQDEEVGDGT 83 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHH----HHHHHHHHHHhhhhhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCc--h-hhHHhhhhccCC------hhhHhHH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAGN------NYEVGNM 222 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~~~------~~~l~~l 222 (531)
||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++. . .|.++|+||+++ .++++++
T Consensus 84 TtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va~tsl~sK~i~~~~~~~~~i 163 (515)
T 3iyg_G 84 TSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNI 163 (515)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998874 3 899999999863 4677899
Q ss_pred HHHHHHhhccC--C--------ceEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecc----
Q 009601 223 IAEAMSKVGRK--G--------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDK---- 286 (531)
Q Consensus 223 i~~A~~~v~~~--g--------~I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~---- 286 (531)
+++|+..+.++ + .|++ .+|++++|| ++++||+|+++|.||. |+++++||||+++|+
T Consensus 164 ~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIll~~~~Le~ 235 (515)
T 3iyg_G 164 ALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDS-CVLRGVMINKDVTHPR-------MRRYIKNPRIVLLDSSLEY 235 (515)
T ss_pred HHHHHHhcccccCCCcccchhheeEEEEecCCCcccc-eEEeeEEEeCCCCCCC-------CcceeeeeEEEEEcccccc
Confidence 99999998732 2 1333 589999999 9999999999999984 778899999999999
Q ss_pred ---------ccCCHHHHHHHHH-----------HHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccc
Q 009601 287 ---------KITNARDLINVLE-----------DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERK 346 (531)
Q Consensus 287 ---------~i~~~~~l~~~le-----------~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~ 346 (531)
.|++++++.++++ ++.+.|++|||++++|++.++++|..+ +|+|| ++++
T Consensus 236 ~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~------~I~av-----~~~~ 304 (515)
T 3iyg_G 236 KKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRA------NITAI-----RRVR 304 (515)
T ss_pred cccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHC------Cceee-----ccCC
Confidence 4678888877766 899999999999999999999999864 45654 6888
Q ss_pred cchHHHHHHHhCCeEEecCCCccccCCCCCCCce-eeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHH
Q 009601 347 SQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422 (531)
Q Consensus 347 ~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~-~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e 422 (531)
+++|+|||++|||++++ +++++++++||+ |+.|++ ++++++||+||+++
T Consensus 305 k~~leria~~tGa~ii~-----~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~---------------------- 357 (515)
T 3iyg_G 305 KTDNNRIARACGARIVS-----RPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP---------------------- 357 (515)
T ss_pred HHHHHHHHHHhCCeeec-----cccccChhhcCCcccEEEEEEECCceEEEEeCCCCC----------------------
Confidence 99999999999999999 589999999999 999985 46789999999874
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHH
Q 009601 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKV 501 (531)
Q Consensus 423 ~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~ 501 (531)
..|||+|||+|+++++|+||+++||||++|++++++ +|||||++|++++.+|++++.+.++.+| +
T Consensus 358 -------------~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~eq-~ 423 (515)
T 3iyg_G 358 -------------KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQ-W 423 (515)
T ss_pred -------------CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhccCcHHH-H
Confidence 589999999999999999999999999999999876 9999999999999999999988888887 8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 502 GADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 502 ~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++++|++||+.||++||+|||+|+.+++.
T Consensus 424 ~i~~~a~Ale~ip~~La~NaG~d~~~~v~ 452 (515)
T 3iyg_G 424 PYRAVAQALEVIPRTLIQNCGASTIRLLT 452 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999998875
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-85 Score=713.29 Aligned_cols=395 Identities=20% Similarity=0.286 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
++++..|+.||+.|+++|+|||||+||||||++++|+|+|||||+||||+|+++||+ |+|++++|++||+++||||
T Consensus 10 ~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~~~GDGT 85 (512)
T 3iyg_Q 10 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPA----AKMIVMASHMQEQEVGDGT 85 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHH----HHHHHHHHHHhhhhhCCCh
Confidence 689999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhc----ccccCch-hhHHhhhhccCC-----hhhHhH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQM----SKEVEDS-ELADVAAVSAGN-----NYEVGN 221 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~----s~~v~~~-~l~~va~ts~~~-----~~~l~~ 221 (531)
||+||||++||+++.+++++|+||+.|++||++|++.++++|+++ ++++++. +|.++|+||+++ +++|++
T Consensus 86 TtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~ 165 (512)
T 3iyg_Q 86 NFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAK 165 (512)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCCccchHHHHH
Confidence 999999999999999999999999999999999999999999998 5566666 899999999876 789999
Q ss_pred HHHHHHHhhccC-CceEe-------ecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc------
Q 009601 222 MIAEAMSKVGRK-GVVTL-------EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK------ 287 (531)
Q Consensus 222 li~~A~~~v~~~-g~I~v-------~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~------ 287 (531)
|+++|+.+++++ +.|.+ ..|+++.|+ ++++||+|+++|.+ |+..++||+|++++++
T Consensus 166 livdAv~~V~~~~~~i~v~~I~i~k~~Ggs~~ds-~lv~G~~~dk~~~~---------~~~~~~n~kI~ll~~~le~~~~ 235 (512)
T 3iyg_Q 166 LIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSS-SVLHGMVFKKETEG---------DVTSVKDAKIAVYSCPFDGMIT 235 (512)
T ss_pred HHHHHHHHHhccCCcccHhHeeEeeccCCCcccc-eEEeeEEEecCcCC---------CCcccccCceEEEecccccccc
Confidence 999999999986 44432 469999888 99999999999865 3456788999998876
Q ss_pred -------cCCHHHHHHH-------HH----HHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccch
Q 009601 288 -------ITNARDLINV-------LE----DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (531)
Q Consensus 288 -------i~~~~~l~~~-------le----~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~ 349 (531)
|++++++.++ ++ ++.+.|+||||++++|++.++++|..+ +|+||+.|+ +.+
T Consensus 236 e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~------~I~av~~~~-----~~d 304 (512)
T 3iyg_Q 236 ETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKY------NIMLVRLNS-----KWD 304 (512)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHC------CeEEEEeCC-----HHH
Confidence 4667777665 44 889999999999999999998887643 789999887 567
Q ss_pred HHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 009601 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (531)
Q Consensus 350 L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l 426 (531)
|+|||++|||++++ +++++++++||+|++|++ +++++++|++|+.
T Consensus 305 le~ia~~tGa~iis-----~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~--------------------------- 352 (512)
T 3iyg_Q 305 LRRLCKTVGATALP-----RLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKE--------------------------- 352 (512)
T ss_pred HHHHHHHhCCEEec-----ccccCCHHHCCcccEEEEEEeCCeEEEEEEcccC---------------------------
Confidence 99999999999999 699999999999999986 4678999998853
Q ss_pred HHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHH
Q 009601 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (531)
Q Consensus 427 ~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~ 505 (531)
++++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+|++++.+.++.+| +++++
T Consensus 353 -------~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq-~~i~~ 424 (512)
T 3iyg_Q 353 -------DGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQ-YAIKK 424 (512)
T ss_pred -------CCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHH-HHHHH
Confidence 25799999999999999999999999999999999999 9999999999999999999888888877 89999
Q ss_pred HHHHHHHHHHHHHHHcCCCccccccC
Q 009601 506 VKRALCYPLKLIAKNAGVNGSVVSEK 531 (531)
Q Consensus 506 ~a~AL~~ip~~L~~NaG~d~~~v~~k 531 (531)
|++||+.||++||+|||+||.+++.|
T Consensus 425 ~a~ALe~ip~~La~NaG~d~~~~v~~ 450 (512)
T 3iyg_Q 425 FAEAFEAIPRALAENSGVKANEVISK 450 (512)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999999999999988753
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-84 Score=704.16 Aligned_cols=394 Identities=23% Similarity=0.374 Sum_probs=355.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |+|++++|++||+++||||
T Consensus 9 ~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~----akll~~~a~~qd~e~GDGT 84 (517)
T 3iyg_Z 9 QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPT----ASLIAKVATAQDDITGDGT 84 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHH----HHHHHHHHHHHHHHhCCCc
Confidence 889999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC-ch-hhHHhhhhccCC------hhhHhHHH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DS-ELADVAAVSAGN------NYEVGNMI 223 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~-~~-~l~~va~ts~~~------~~~l~~li 223 (531)
||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++ +. .|.++|+||+++ .+.|++++
T Consensus 85 TtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~L~~va~tsl~sKi~~~~~d~la~l~ 164 (517)
T 3iyg_Z 85 TSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAV 164 (517)
T ss_pred eeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 55 899999999864 58899999
Q ss_pred HHHHHhhccCC------c--eEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeecccc-------
Q 009601 224 AEAMSKVGRKG------V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI------- 288 (531)
Q Consensus 224 ~~A~~~v~~~g------~--I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i------- 288 (531)
+||+..+.+.+ . |...+|++..|+ ++++||+|+++|.||+ |+++++||+|+++|++|
T Consensus 165 vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~p~-------m~~~ien~kIll~~~~le~~k~e~ 236 (517)
T 3iyg_Z 165 VDSILAIKKQDEPIDLFMVEIMEMKHKSETDT-SLIRGLVLDHGARHPD-------MKKRVEDAYILTCNVSLEYEKTEV 236 (517)
T ss_pred HHHhheeccCCCcCChhHheeeeecCCCcccc-ceEeeEEEeccCCCCC-------ccccccCCeEEEeccccccccccc
Confidence 99999886532 1 344689999999 9999999999999997 67889999999999975
Q ss_pred ------CCHHHH-----------HHHHHHHHhcCCC--------E-EEEeccchHHHHHHHHHHhhcccceEEEeecCCc
Q 009601 289 ------TNARDL-----------INVLEDAIRGAYP--------I-LIIAEDIEQEALATLVVNKLRGALKIAALKAPGF 342 (531)
Q Consensus 289 ------~~~~~l-----------~~~le~i~~~g~~--------l-vI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~ 342 (531)
++++++ .+.++++...+.+ + ||++++|+++++++|..+ +|++|+
T Consensus 237 ~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~------gI~~v~---- 306 (517)
T 3iyg_Z 237 NSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKE------GIIALR---- 306 (517)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHC------CCEEEE----
Confidence 344443 2345666555544 4 566799999999999876 456666
Q ss_pred CccccchHHHHHHHhCCeEEecCCCccccCCCCCC-CceeeEE---EEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhh
Q 009601 343 GERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEV-LGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418 (531)
Q Consensus 343 ~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~-lG~~~~v---~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~ 418 (531)
++++.+|+|||++|||++++ +++++++++ ||+|+ | .+++++++||+||+++
T Consensus 307 -~v~~~~leria~~tGa~iv~-----~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~------------------ 361 (517)
T 3iyg_Z 307 -RAKRRNMERLTLACGGIALN-----SLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNP------------------ 361 (517)
T ss_pred -ecCHHHHHHHHHHhCCEEec-----chhhCcccccCCcce-EEEEEEcCceEEEEeCCCCc------------------
Confidence 44689999999999999999 699999999 99999 9 4678999999999864
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCCh
Q 009601 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDND 497 (531)
Q Consensus 419 ~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~ 497 (531)
..|||+|||+|+++++|+||+++||||++|+++++| +|||||++|++++.+|++++.+.++.
T Consensus 362 -----------------~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~ 424 (517)
T 3iyg_Z 362 -----------------RSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGR 424 (517)
T ss_pred -----------------hhheeeecCCcHHHHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHHHHHhccCCHH
Confidence 468999999999999999999999999999999999 99999999999999999999888787
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 498 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 498 eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+| +++++|++||+.+|+|||+|||+|+.+++.
T Consensus 425 eq-~~i~~~a~ALe~iP~~La~NaG~d~~~~v~ 456 (517)
T 3iyg_Z 425 AQ-LGVQAFADALLIIPKVLAQNSGFDLQETLV 456 (517)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 77 899999999999999999999999998875
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-84 Score=713.84 Aligned_cols=395 Identities=22% Similarity=0.287 Sum_probs=361.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
+++|..|+.||+.|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |||++++|++||+++||||
T Consensus 25 ~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~----Akll~e~a~~qd~e~GDGT 100 (568)
T 3p9d_H 25 DGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPA----VKVLVMATEQQKIDMGDGT 100 (568)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCHH----HHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHH----HHHHHHHHHhhhceeCCCc
Confidence 579999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhccccc----Cch-hhHHhhhhccC-----ChhhHhH
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV----EDS-ELADVAAVSAG-----NNYEVGN 221 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v----~~~-~l~~va~ts~~-----~~~~l~~ 221 (531)
||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++++ ++. .|.++|+||++ ++++|++
T Consensus 101 TtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~ 180 (568)
T 3p9d_H 101 NLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSE 180 (568)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCCCCCTTHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhccCcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999876 344 89999999864 3689999
Q ss_pred HHHHHHHhhccC-----C-------ceEe--ecCCCccceeEEEeeeEEeecccCCccccCcccCeeecc---ceeEeee
Q 009601 222 MIAEAMSKVGRK-----G-------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYE---NCKLLLV 284 (531)
Q Consensus 222 li~~A~~~v~~~-----g-------~I~v--~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~---~~kIll~ 284 (531)
|+++|+.+++++ + .|++ .+|++++|| ++++||+|+++|. +|+++++ ||||+++
T Consensus 181 livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS-~lv~G~v~dk~~~---------~m~~~i~~~~n~kIlll 250 (568)
T 3p9d_H 181 LVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNS-TVIKGMVFNREPE---------GHVKSLSEDKKHKVAVF 250 (568)
T ss_dssp HHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGC-EEESSCCBSSCBS---------SGGGSCCCCSSCEEEEE
T ss_pred HHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchh-eeeccEEEeeccc---------CCcEEEecCCcceEEEE
Confidence 999999999874 3 4555 469999999 9999999999863 3777888 9999999
Q ss_pred ccc-------------cCCHHHHHH-----------HHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecC
Q 009601 285 DKK-------------ITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (531)
Q Consensus 285 d~~-------------i~~~~~l~~-----------~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~ 340 (531)
|++ |++++++.+ +++++.+.|+||||++++|+++++++|.++ +|+||+.|
T Consensus 251 ~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~------gI~av~~v 324 (568)
T 3p9d_H 251 TCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRY------GILVLKVP 324 (568)
T ss_dssp CSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHH------TCEEECCC
T ss_pred ccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHC------CeEEEecC
Confidence 997 667777654 788999999999999999999999999886 57999877
Q ss_pred CcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE---eCceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 009601 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (531)
Q Consensus 341 ~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~ 417 (531)
+ +.+|+|||++|||++++ +++++++++||+|+.|++ +++++++|.+|+.
T Consensus 325 ~-----~~~leria~~tGa~ivs-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~------------------ 376 (568)
T 3p9d_H 325 S-----KFELRRLCRVCGATPLP-----RLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQG------------------ 376 (568)
T ss_dssp C-----HHHHHHHHHHHSCCCCS-----SSSCCCGGGCEECSCCCCCEETTEECBCCCCCSS------------------
T ss_pred C-----HHHHHHHHHHhCCEEEe-----ccccCCHHHCCcceEEEEEEecCceEEEEecCCC------------------
Confidence 6 78999999999999999 589999999999999974 5689999999862
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHH--cC-eeccCchhHhHHHHHHHHHhccC
Q 009601 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE--EG-IVVGGGCTLLRLSSKVDAIKETL 494 (531)
Q Consensus 418 ~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~--~g-vVpGGGa~el~ls~~L~~~~~~~ 494 (531)
|++++|||+|||+|+.+++|+||+++||||++|++++ ++ +|||||++|++++.+|++++.+.
T Consensus 377 ---------------l~~~~~TIllrG~t~~~l~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~ 441 (568)
T 3p9d_H 377 ---------------EISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERT 441 (568)
T ss_dssp ---------------SCCSSCEEEEEESCHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTC
T ss_pred ---------------CCCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccC
Confidence 1257999999999999999999999999999999999 66 99999999999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 495 ~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 442 ~g~eq-~~i~~fa~ALe~ip~~La~NaG~d~~~~v~ 476 (568)
T 3p9d_H 442 PGLLQ-LAIKQFAVAFEVVPRTLAETAGLDVNEVLP 476 (568)
T ss_dssp CSTHH-HHHHHHHHGGGHHHHHHHHHHTCCHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 88887 899999999999999999999999998874
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-84 Score=707.32 Aligned_cols=400 Identities=23% Similarity=0.332 Sum_probs=355.7
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcc
Q 009601 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (531)
Q Consensus 65 ~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 144 (531)
+...| .+++..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |+|++++|++||
T Consensus 11 ~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----akll~e~a~~qd 84 (546)
T 3p9d_F 11 ESLRR--DAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPT----AVLIARAAAAQD 84 (546)
T ss_dssp EEEEH--HHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHH----HHHHHHHHHHHH
T ss_pred chhhH--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHH----HHHHHHHHHHHH
Confidence 44455 899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccC----ch-hhHHhhhhccCC----
Q 009601 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE----DS-ELADVAAVSAGN---- 215 (531)
Q Consensus 145 ~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~----~~-~l~~va~ts~~~---- 215 (531)
+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++ +. .|.++|+||+++
T Consensus 85 ~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~~ 164 (546)
T 3p9d_F 85 EITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDA 164 (546)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTTHH
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHhCCCcch
Confidence 999999999999999999999999999999999999999999999999999999885 33 899999999874
Q ss_pred --hhhHhHHHHHHHHhhccC-------CceE--eecCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeee
Q 009601 216 --NYEVGNMIAEAMSKVGRK-------GVVT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (531)
Q Consensus 216 --~~~l~~li~~A~~~v~~~-------g~I~--v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~ 284 (531)
.+.|++++++|+..+.+. ..|. ..+|++..|| ++++||+|+++|.||+ |+++++||+|+++
T Consensus 165 ~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~~en~kIll~ 236 (546)
T 3p9d_F 165 DLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDT-TFIKGLVLDHGGRHPD-------MPTRVKNAYVLIL 236 (546)
T ss_dssp HHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTC-CCCSSCEESCCCCSSS-------SCSSBCSCCCCEE
T ss_pred hHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCcccc-EEEeeEEEeccccccc-------CcceecCceEEEe
Confidence 478999999999998642 1233 3589999999 8999999999999984 7888999999999
Q ss_pred ccccC-------------CHHHH-----------HHHHHHHHh---------cCCC-EEEEeccchHHHHHHHHHHhhcc
Q 009601 285 DKKIT-------------NARDL-----------INVLEDAIR---------GAYP-ILIIAEDIEQEALATLVVNKLRG 330 (531)
Q Consensus 285 d~~i~-------------~~~~l-----------~~~le~i~~---------~g~~-lvI~~~~I~~~al~~L~~n~~~g 330 (531)
|++|+ +++++ .+.++.+.. .|.| |||++++|+++++++|..|+
T Consensus 237 ~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~g--- 313 (546)
T 3p9d_F 237 NVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHN--- 313 (546)
T ss_dssp CCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTT---
T ss_pred cCcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCC---
Confidence 98753 22222 234566654 3455 66667899999999999884
Q ss_pred cceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEE---EeCceEEEEcCCCChhhHHHHH
Q 009601 331 ALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRV 407 (531)
Q Consensus 331 ~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~ri 407 (531)
|++|+ ++++.+|+|||++|||++++ +++++++++||+|+.|+ +++++++||+||+++
T Consensus 314 ---I~~vr-----~v~~~~leria~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~------- 373 (546)
T 3p9d_F 314 ---ILALR-----RAKRRNMERLQLVTGGEAQN-----SVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP------- 373 (546)
T ss_dssp ---CEEEC-----CCCHHHHHHHHHTTTBCCCC-----CCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCC-------
T ss_pred ---CeeEe-----cCCHHHHHHHHHHhCCEEec-----chhhCCHhHCCcccEEEEEEecCceEEEEecCCCC-------
Confidence 46666 45689999999999999999 68999999999999994 678999999999874
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHH
Q 009601 408 AQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSK 486 (531)
Q Consensus 408 ~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~ 486 (531)
..|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|++++.+
T Consensus 374 ----------------------------~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~ 425 (546)
T 3p9d_F 374 ----------------------------KSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRY 425 (546)
T ss_dssp ----------------------------SCEEEECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHHHHH
T ss_pred ----------------------------ceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999 999999999999999
Q ss_pred HHH---HhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 487 VDA---IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 487 L~~---~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
|++ ++.+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 426 L~~~~~~~~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 471 (546)
T 3p9d_F 426 LRSANMNKLGAKGKTK-TGIEAFAEALLVIPKTLVKNSGFDPLDVLA 471 (546)
T ss_dssp HHHHHTTTTTTTSHHH-HHHHHHHHHHHHHHHHHHTTTCCTTTTCCH
T ss_pred HHhhhhhhhcCchHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 998 5777888877 899999999999999999999999999875
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-78 Score=655.94 Aligned_cols=366 Identities=23% Similarity=0.363 Sum_probs=294.5
Q ss_pred EeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 009601 101 VLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR 180 (531)
Q Consensus 101 mI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~ 180 (531)
||+++.|+|+|||||+||||+|+++||+ |||++++|++||+++||||||+||||++||+++.+++++|+||+.|++
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~ 76 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPA----AKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISE 76 (500)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHH----HHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7889999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCc--h-hhHHhhhhcc------CChhhHhHHHHHHHHhhccC--Cc--------eEee--
Q 009601 181 GIEKTSKALVSELKQMSKEVED--S-ELADVAAVSA------GNNYEVGNMIAEAMSKVGRK--GV--------VTLE-- 239 (531)
Q Consensus 181 G~~~a~~~~~~~L~~~s~~v~~--~-~l~~va~ts~------~~~~~l~~li~~A~~~v~~~--g~--------I~v~-- 239 (531)
||++|++.++++|++++++++. . .|.++|+|++ +++++|++|+++|+.+++++ |. |+++
T Consensus 77 G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~ 156 (500)
T 3aq1_B 77 GYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKR 156 (500)
T ss_dssp HHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEe
Confidence 9999999999999999999874 4 8999999875 36899999999999999876 53 5554
Q ss_pred cCCCccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccc-------------cCCHHHH-----------H
Q 009601 240 EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARDL-----------I 295 (531)
Q Consensus 240 ~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l-----------~ 295 (531)
+|++++|+ ++++||+|+++|.|||| +++++||||+++|++ |++++++ .
T Consensus 157 ~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~ 228 (500)
T 3aq1_B 157 AGGSIDDS-ELIDGLVIDKERSHPNM-------PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMR 228 (500)
T ss_dssp ESSCGGGC-EEESEEEESCCCSSTTS-------CSEEEEEEEEEESSCBCC-------------------------CHHH
T ss_pred cCCCccce-EEEeeeEEeecCCCCCC-------cccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHH
Confidence 89999998 99999999999999974 667899999999998 6667665 8
Q ss_pred HHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCC
Q 009601 296 NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGK 375 (531)
Q Consensus 296 ~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~ 375 (531)
++++++.+.|+||||++++|+++++++|..++ |+||+ ++++++|+|||++|||++++ +++++++
T Consensus 229 ~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~-----~~~k~~le~ia~~tGa~iis-----~l~~~~~ 292 (500)
T 3aq1_B 229 EMAEKVIASGANVVFCQKGIDDMAQYYIEKAG------IYAVR-----RVKKSDLKRLSKVTGATIIQ-----DLDQITT 292 (500)
T ss_dssp HHHHHHHTTCCSEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHCCCCBS-----CTTCCCS
T ss_pred HHHHHHHHhCcCEEEECCCcCHHHHHHHHHCC------EEEEE-----eCCHHHHHHHHHHhCCeEec-----ccccCCH
Confidence 89999999999999999999999999999874 57774 77899999999999999998 6899999
Q ss_pred CCCceeeEEEEe---CceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Q 009601 376 EVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKE 452 (531)
Q Consensus 376 ~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E 452 (531)
++||+|+.|++. ++++++|+||++ +++|||+|||+|+.+++|
T Consensus 293 ~~LG~a~~v~~~~ig~~~~~~~~g~~~-----------------------------------~~~~TI~lrG~t~~~l~E 337 (500)
T 3aq1_B 293 EDVGTAGLVEEKEVRGGKMTYVTGCQN-----------------------------------SKAVTVLLHGGTEHVVDS 337 (500)
T ss_dssp TTCEEEEEEEEEECSSSEEEEEEEETT-----------------------------------CCCEEEEEEESSHHHHHH
T ss_pred hHCCCceEEEEEEecCeEEEEEECCCC-----------------------------------CceEEEEecCCcHHHHHH
Confidence 999999999874 899999999876 479999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 453 KKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 453 ~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
+||+++||||++|+++++| +|||||++|++++.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++.
T Consensus 338 ~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~ 415 (500)
T 3aq1_B 338 LDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQ-LAVSKFAEALEVIPVALAENAGLDPIDIMV 415 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHH-HHHHHHHHHTTHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999 9999999999999999999988888777 899999999999999999999999998875
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=366.28 Aligned_cols=193 Identities=48% Similarity=0.801 Sum_probs=189.6
Q ss_pred eEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHh
Q 009601 248 LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNK 327 (531)
Q Consensus 248 ~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~ 327 (531)
+++++||.|||||+||||+|++++|.++++||+||++|.+|+++++++|+||.+.+.|.||+|++++|+++||++|+.|+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs~i~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvNk 81 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNA 81 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEecccccchhhhhhhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHH
Q 009601 328 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRV 407 (531)
Q Consensus 328 ~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~ri 407 (531)
++|.++|+|||+|+||+.|+..|+|||++|||++++++.|+++++++.++||+|++|.+++|+|++++|.++++.|++|+
T Consensus 82 lrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~T~iv~G~g~~~~I~~Rv 161 (194)
T 3m6c_A 82 IRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRA 161 (194)
T ss_dssp HHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred ccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEEEEcCCceEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEE
Q 009601 408 AQIRTLIENAEQDYEREKLNERIAKLSGGVAVI 440 (531)
Q Consensus 408 ~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI 440 (531)
+||+.+++.++++|+||+|+||+|+|+|++|+|
T Consensus 162 ~qIr~~ie~t~s~ydkEKLqERlAkLsGGVAVI 194 (194)
T 3m6c_A 162 KHLRAEIDKSDSDWDREKLGERLAKLAGGVAVI 194 (194)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHBCCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCcEEC
Confidence 999999999999999999999999999999864
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=357.52 Aligned_cols=189 Identities=57% Similarity=0.892 Sum_probs=185.8
Q ss_pred EeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcc
Q 009601 251 VEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRG 330 (531)
Q Consensus 251 v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g 330 (531)
.+||.||+||+||||+|++++|.++++||+||++|.+|+++++++|+||.+.+.|.||+|++++|+++||++|+.|+++|
T Consensus 12 ~~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNklrg 91 (201)
T 3osx_A 12 SEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMRG 91 (201)
T ss_dssp CCCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCHHHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHHHT
T ss_pred ccccEecCccCChheeecccCCEEEecCCeEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHH
Q 009601 331 ALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQI 410 (531)
Q Consensus 331 ~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l 410 (531)
.++|+|||+|+||+.|+..|+|||++|||++++++.|+++++++.++||+|++|.+++|+|++++|.++++.|++||+||
T Consensus 92 ~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vtkd~TtIv~G~G~~~~I~~Rv~qI 171 (201)
T 3osx_A 92 IVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQI 171 (201)
T ss_dssp SCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEcCCceEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCeEE
Q 009601 411 RTLIENAEQDYEREKLNERIAKLSGGVAV 439 (531)
Q Consensus 411 ~~~l~~~~~~~e~~~l~eRl~~l~g~~~t 439 (531)
+.+++.++++|+||+|+||||+|+|++|+
T Consensus 172 r~qie~t~S~ydkEKLqERLAKLsGGVAV 200 (201)
T 3osx_A 172 RQQIEESTSDYDREKLQERVAKLAGGVKL 200 (201)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCcC
Confidence 99999999999999999999999999874
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=268.82 Aligned_cols=144 Identities=56% Similarity=0.922 Sum_probs=142.0
Q ss_pred eeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccc
Q 009601 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGAL 332 (531)
Q Consensus 253 G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~ 332 (531)
||.|||||+||||++++++|..+++||+||++|++|+++++++|+||++.+.|.||+|++++|+++||++|+.|+++|.+
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l 80 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL 80 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSC
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEecccccCHHHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEeCceEEEEcC
Q 009601 333 KIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396 (531)
Q Consensus 333 ~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~g 396 (531)
+++|||+|+||+.|+..|+|||.+|||++++++.|+++++++.++||+|++|.+++|+|++++|
T Consensus 81 ~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~TtIv~G 144 (145)
T 1srv_A 81 SVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGG 144 (145)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred eEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999975
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=189.09 Aligned_cols=146 Identities=17% Similarity=0.291 Sum_probs=120.6
Q ss_pred ccceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC-------------CHHH-----------HHHHHH
Q 009601 244 AENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARD-----------LINVLE 299 (531)
Q Consensus 244 ~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~-------------~~~~-----------l~~~le 299 (531)
++|| ++++|++|++++.+| +||..++||||+++++++. ++++ +.++++
T Consensus 1 ~~dS-~lv~Gvvl~k~~~~~-------~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~ 72 (178)
T 1gml_A 1 MEDS-CVLRGVMINKDVTHP-------RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCE 72 (178)
T ss_dssp --CC-SEEEEEEESCCCSST-------TSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHH
T ss_pred CCCc-EEEEEEEEeccccCC-------CCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 3678 899999999998876 4788899999999999753 2322 356788
Q ss_pred HHHhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCc
Q 009601 300 DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLG 379 (531)
Q Consensus 300 ~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG 379 (531)
++++.|+++||++++|++.++++|.++ +|+||+ ++++++|++||++|||++++ ++++++++.||
T Consensus 73 kI~~~g~nVVl~~k~I~d~a~~~l~k~------gI~~vr-----~v~~~dleria~atGa~iv~-----~~~~l~~~~LG 136 (178)
T 1gml_A 73 DIIQLKPDVVITEKGISDLAQHYLMRA------NVTAIR-----RVRKTDNNRIARACGARIVS-----RPEELREDDVG 136 (178)
T ss_dssp HHHTTCCSEEEESSCBCHHHHHHHHHT------TCEEEC-----CCCHHHHHHHHHHHCCCEES-----CGGGCCGGGSB
T ss_pred HHhhcCCcEEEECCcccHHHHHHHHHC------CCEEEe-----cCCHHHHHHHHHHhCCeEeC-----ChhhCChhhhC
Confidence 999999999999999999999999887 456666 66799999999999999999 69999999999
Q ss_pred e-eeEEE---EeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCeEEEEeCCCCHH
Q 009601 380 N-ASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 448 (531)
Q Consensus 380 ~-~~~v~---i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~ 448 (531)
+ |+.|+ ++++++++|+||+++ ..|||+|||+|..
T Consensus 137 ~~~~~v~~~~ig~~~~~~~~gc~~~-----------------------------------~~~TIllRG~~~~ 174 (178)
T 1gml_A 137 TGAGLLEIKKIGDEYFTFITDCKDP-----------------------------------KACTILLRGASHH 174 (178)
T ss_dssp CCEEEEEEEEETTEEEEEEEEESST-----------------------------------TSCEEEEEC----
T ss_pred CcccEEEEEEECCeEEEEEECCCCC-----------------------------------CEEEEEEECCCcc
Confidence 9 99997 468899999999763 5899999999854
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-19 Score=162.06 Aligned_cols=126 Identities=22% Similarity=0.343 Sum_probs=108.7
Q ss_pred EeeeEEeecccCCccccCcccCeeeccceeEeeeccccC-------------CHHH-----------HHHHHHHHHhcCC
Q 009601 251 VEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARD-----------LINVLEDAIRGAY 306 (531)
Q Consensus 251 v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~-------------~~~~-----------l~~~le~i~~~g~ 306 (531)
++|++|++++.+| +|++.++||||+++++++. ++++ +.+.++++++.|+
T Consensus 1 i~Gvv~~k~~~~~-------~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~ 73 (159)
T 1ass_A 1 MSGIVIDKEKVHS-------KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA 73 (159)
T ss_dssp CCCEEESCCCSCT-------TSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEecccCCC-------CCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCC
Confidence 4799999998886 4788899999999999853 3433 3557889999999
Q ss_pred CEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE
Q 009601 307 PILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL 386 (531)
Q Consensus 307 ~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i 386 (531)
++||++++|++.++++|.++ +|+||+ ++++++|++||++|||++++ ++++++++.||+|+.|+.
T Consensus 74 nVVl~~k~I~d~a~~~l~k~------gI~~v~-----~v~~~dleria~atGa~iv~-----~~~~l~~~~LG~~~~v~e 137 (159)
T 1ass_A 74 NVVLCQKGIDDVAQHYLAKE------GIYAVR-----RVKKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEE 137 (159)
T ss_dssp SEEEESSCBCHHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHTCCCBS-----STTSCCTTSCEEEEEEEE
T ss_pred eEEEECCccCHHHHHHHHHC------CCEEEc-----cCCHHHHHHHHHHhCCeeeC-----ccccCCcccCccceEEEE
Confidence 99999999999999999887 456666 66799999999999999999 689999999999999974
Q ss_pred ---eCceEEEEcCCCC
Q 009601 387 ---TKDTTTIVGDGST 399 (531)
Q Consensus 387 ---~~~~~~~~~g~~~ 399 (531)
+++++++|.||++
T Consensus 138 ~~ig~~~~~~~~g~~~ 153 (159)
T 1ass_A 138 RKIGDDRMTFVMGCKN 153 (159)
T ss_dssp EEETTEEEEEEESCC-
T ss_pred EEECCeEEEEEECCCC
Confidence 6889999999976
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 531 | ||||
| d1kida_ | 193 | c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta | 2e-81 | |
| d1sjpa2 | 184 | c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium | 2e-81 | |
| d1ioka2 | 176 | c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de | 2e-78 | |
| d1srva_ | 145 | c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus | 1e-64 | |
| d1kp8a1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc | 7e-52 | |
| d1kp8a1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc | 3e-09 | |
| d1ioka1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par | 6e-45 | |
| d1ioka1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par | 3e-12 | |
| d1we3a1 | 255 | a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The | 1e-44 | |
| d1q3qa1 | 258 | a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain | 1e-35 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 2e-26 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 1e-07 | |
| d1a6db1 | 243 | a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai | 5e-25 | |
| d1sjpa3 | 89 | d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My | 7e-22 | |
| d1sjpa3 | 89 | d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My | 1e-04 | |
| d1sjpa1 | 180 | a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My | 9e-21 | |
| d1we3a3 | 86 | d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th | 4e-17 | |
| d1we3a3 | 86 | d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th | 8e-06 | |
| d1kp8a3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es | 1e-14 | |
| d1kp8a3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es | 2e-12 | |
| d1ioka3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa | 2e-12 | |
| d1ioka3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa | 3e-12 |
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Score = 250 bits (640), Expect = 2e-81
Identities = 109/190 (57%), Positives = 138/190 (72%)
Query: 248 LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYP 307
EGMQFDRGY+SPYF+ E AVE E+ +LL DKKI+N R+++ VLE + P
Sbjct: 4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKP 63
Query: 308 ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367
+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+ L DIA LTGGTVI +E+G
Sbjct: 64 LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG 123
Query: 368 LALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427
+ L+K E LG A +VV+ KDTTTI+ + A+ RVAQIR IE A DY+REKL
Sbjct: 124 MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 183
Query: 428 ERIAKLSGGV 437
ER+AKL+GGV
Sbjct: 184 ERVAKLAGGV 193
|
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 249 bits (638), Expect = 2e-81
Identities = 104/184 (56%), Positives = 133/184 (72%)
Query: 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIA 312
GM+FD+GYIS YFVTD E+ E+ +LLV K++ +DL+ +LE I P+LIIA
Sbjct: 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60
Query: 313 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDK 372
ED+E EAL+TLVVNK+RG K A+KAPGFG+R+ L D+AILTGG VI +EVGL L+
Sbjct: 61 EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120
Query: 373 VGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAK 432
+LG A KVV+TKD TTIV DA++ RVAQIR IEN++ DY+REKL ER+AK
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180
Query: 433 LSGG 436
L+GG
Sbjct: 181 LAGG 184
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Score = 241 bits (617), Expect = 2e-78
Identities = 96/175 (54%), Positives = 129/175 (73%)
Query: 252 EGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILII 311
EGMQFDRGY+SPYFVT+++KM E E+ +LL +KK+++ + ++ +LE I+ P+LI+
Sbjct: 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIV 60
Query: 312 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALD 371
AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+ L DIAILTGG VI +++G+ L+
Sbjct: 61 AEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLE 120
Query: 372 KVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426
V ++LG A KV + KD TTIV + + RV+QIR IE DY+REKL
Sbjct: 121 NVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKL 175
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Score = 204 bits (521), Expect = 1e-64
Identities = 81/143 (56%), Positives = 107/143 (74%)
Query: 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIA 312
G QFD+GYISPYFVT+ E M E+ +L+V+KK++N R+L+ +LE + P+LIIA
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 313 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDK 372
ED+E EALATLVVNKLRG L +AA+KAPGFG+R+ + L DIA +TGGTVI +E+G L+
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 373 VGKEVLGNASKVVLTKDTTTIVG 395
+LG A +V +TKD TTIVG
Sbjct: 121 ATLSMLGRAERVRITKDETTIVG 143
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Score = 175 bits (444), Expect = 7e-52
Identities = 99/251 (39%), Positives = 130/251 (51%), Gaps = 24/251 (9%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAKD+ F D A K+ GVN LAD V VTLGPKGRNVVL+ +GAP I DGV+VA+E
Sbjct: 1 AAKDVKFGND--AGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVARE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+ELED EN+GA++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RG
Sbjct: 59 IELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDSELADVAAV--------SAGNNYEVG-NMIAEAMSKVGR 232
I+K V ELK +S V + V + VG + AM R
Sbjct: 119 IDKAVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLR 178
Query: 233 KGV-------------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENC 279
+ V V +G N G D G + P VT S
Sbjct: 179 QIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAG 238
Query: 280 KLLLVDKKITN 290
++ + +T+
Sbjct: 239 LMITTECMVTD 249
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Score = 55.9 bits (134), Expect = 3e-09
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 12/201 (5%)
Query: 336 ALKAPGFG-ERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV 394
A K FG + + L + +L ++ +G V + A + TKD ++
Sbjct: 1 AAKDVKFGNDAGVKMLRGVNVLAD--AVKVTLGPKGRNVVLDKSFGAPTI--TKDGVSVA 56
Query: 395 GDGSTQDAVSKRVAQIRTLIENAEQD----YEREKLNERIAKLSGGVAVIQVGAQTETEL 450
+ +D AQ+ + + D A ++ G+ + G
Sbjct: 57 REIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLK 116
Query: 451 KEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRAL 510
+ V A+ A+ G+V GGG L+R++SK+ ++ N ++ VG + RA+
Sbjct: 117 RGIDKAVTVAV-EELKALSVGVVAGGGVALIRVASKLADLR--GQNADQNVGIKVALRAM 173
Query: 511 CYPLKLIAKNAGVNGSVVSEK 531
PL+ I N G SVV+
Sbjct: 174 EAPLRQIVLNCGEEPSVVANT 194
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Score = 156 bits (396), Expect = 6e-45
Identities = 88/252 (34%), Positives = 129/252 (51%), Gaps = 25/252 (9%)
Query: 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKE 121
AAK++ FN D A ++ GVN LAD V VTLGPKGRNVV++ +GAP+I DGV+VAKE
Sbjct: 1 AAKEVKFNSD--ARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKE 58
Query: 122 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 181
+EL D EN+GA++VR+ A++TND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RG
Sbjct: 59 IELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRG 118
Query: 182 IEKTSKALVSELKQMSKEVEDSEL--------ADVAAVSAGNNYEVGNMI---------A 224
I+ + +V +K ++ + A ++ + G I
Sbjct: 119 IDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMR 178
Query: 225 EAMSKVGRKGVVTLEEGKSAENMLYVVE------GMQFDRGYISPYFVTDSEKMAVEYEN 278
+ G G V + + + + + G F G I P V +
Sbjct: 179 QIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVA 238
Query: 279 CKLLLVDKKITN 290
L+ + I
Sbjct: 239 GLLITTEAMIAE 250
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Score = 64.4 bits (156), Expect = 3e-12
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 16/200 (8%)
Query: 336 ALKAPGFG-ERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV 394
A K F + + + L + IL ++ +G V + A ++ TKD ++
Sbjct: 1 AAKEVKFNSDARDRMLKGVNILAD--AVKVTLGPKGRNVVIDKSFGAPRI--TKDGVSVA 56
Query: 395 GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKK 454
+ D AQ+ + E + A+++ G +
Sbjct: 57 KEIELSDKFENMGAQM---VREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPM 113
Query: 455 LRVEDALNATKAAVEE------GIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKR 508
AT VE GIVVGGG L++ + ++ + N ++ G I++R
Sbjct: 114 DLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSG--ANSDQDAGIAIIRR 171
Query: 509 ALCYPLKLIAKNAGVNGSVV 528
AL P++ IA+NAGV+G+VV
Sbjct: 172 ALEAPMRQIAENAGVDGAVV 191
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Score = 155 bits (393), Expect = 1e-44
Identities = 95/256 (37%), Positives = 132/256 (51%), Gaps = 29/256 (11%)
Query: 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEV 122
AK L F++ A + L+ GVN +A+ V VTLGP+GRNVVLE K+G+P I DGVTVAKEV
Sbjct: 1 AKILVFDEA--ARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEV 58
Query: 123 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI 182
ELED +ENIGA+L+++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGI
Sbjct: 59 ELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGI 118
Query: 183 EKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMI------------AEAMSKV 230
EK +A V ++K ++ V V + A + E A+ +
Sbjct: 119 EKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEP 178
Query: 231 GRKGVVTLEEG------------KSAENMLYVVEGMQFD---RGYISPYFVTDSEKMAVE 275
R+ K+ G D G + P VT S
Sbjct: 179 ARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAA 238
Query: 276 YENCKLLLVDKKITNA 291
+L + +
Sbjct: 239 SIGALILTTEAVVAEK 254
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 131 bits (330), Expect = 1e-35
Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 32/243 (13%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
A + +A+ V TLGPKG + +L G + ND T+ +++L ++ A
Sbjct: 16 AQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDL----QHPAA 71
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
K++ + A + AGDGTTT+VV+A L+ + +++ +P +IT+G ++ L
Sbjct: 72 KMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEIL 131
Query: 194 KQMS----KEVEDSELADVAAVSAGNNYEVGNMIAEAMSKV---------------GRKG 234
+++ + ++A +VG A A+ G
Sbjct: 132 DEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDT 191
Query: 235 VVTLEEGKSAENM------LYVVEGMQFD---RGYISPYFVTDSEKMAVEYENCKLLLVD 285
V L + S + V EG D +G I P V + +L +D
Sbjct: 192 VEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRID 251
Query: 286 KKI 288
I
Sbjct: 252 DVI 254
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 105 bits (263), Expect = 2e-26
Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 34/244 (13%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
A + +AD V TLGPKG + +L G I NDG T+ KE+++E P A
Sbjct: 7 AQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT----A 62
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
K++ + + + GDGTTT+VVL+ L+ + ++ G +P +I+ G +
Sbjct: 63 KMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKII 122
Query: 194 KQMSKEVED-----------SELADVAAVSAGNNYEVGNMIAEAMSKV--------GRKG 234
+++++ LA A G A+A+ + G
Sbjct: 123 DEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDP 182
Query: 235 VVTLEEGKSAENMLYVVEGM---------QFDRGYISPYFVTDSE-KMAVEYENCKLLLV 284
+ TL + K+ + + G+ +G + P V + AVE +L +
Sbjct: 183 INTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVA-TMILRI 241
Query: 285 DKKI 288
D I
Sbjct: 242 DDVI 245
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 50.9 bits (121), Expect = 1e-07
Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 3/181 (1%)
Query: 353 IAILTGGTVIRDEVGLALDKVGKEVL--GNASKVVLTKDTTTIVGDGSTQDAVSKRVAQI 410
+ I D V L G + + + ++++ D TI+ + + +K + ++
Sbjct: 9 RNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEV 68
Query: 411 RTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470
+ A D + L ++ G +L V +A E+
Sbjct: 69 SKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK 128
Query: 471 GIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530
+ GGG L+ ++ ++ E ++ + +AL + +A+NAG++
Sbjct: 129 SFLWGGGAVEAELAMRLAKYANSVGGRE-QLAIEAFAKALEIIPRTLAENAGIDPINTLI 187
Query: 531 K 531
K
Sbjct: 188 K 188
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 101 bits (253), Expect = 5e-25
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGA 133
AMK+ +++ V +LGP+G + +L G I NDGVT+ KE+++E P A
Sbjct: 3 AMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----A 58
Query: 134 KLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSEL 193
K++ + + + GDGTTT+V++A GL+ + ++ +P +I+ G S+ +
Sbjct: 59 KMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVI 118
Query: 194 KQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGV 235
++S ++ + A ++ +
Sbjct: 119 DEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKF 160
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 87.5 bits (217), Expect = 7e-22
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 199 EVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFD 257
EVE E +A AA+SAG+ +G++IAEAM KVG +GV+T+EE + L + E
Sbjct: 1 EVETKEQIAATAAISAGDQ-SIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEVAVIK 59
Query: 258 RGYISPYFVTD-SEKMAVEYENCKLLLVD 285
G + + + ++ N K + +
Sbjct: 60 AGAATEVELKERKHRIEDAVRNAKAAVEE 88
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 38.6 bits (90), Expect = 1e-04
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 437 VAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 471
VAVI+ GA TE ELKE+K R+EDA+ KAAVEEG
Sbjct: 55 VAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG 89
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 87.5 bits (216), Expect = 9e-21
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 126 DPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKT 185
DP E IGA+LV++ A KT+D+AGDGTTT+ VLAQ L+ EG++ VAAGANP+ + RGIEK
Sbjct: 1 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKA 60
Query: 186 SKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGR 232
+ + L + +K V + + A + ++ A + V
Sbjct: 61 VEKVTETLLKGAKIVAGGGVTLLQAAPTLDELKLEGDEATGANIVKV 107
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Score = 74.4 bits (183), Expect = 4e-17
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 203 SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYIS 262
+ +VA +SA N+ EVG +IA+AM KVG++G++T+EE KS E L V +
Sbjct: 4 KAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVGVAVI---RVG 59
Query: 263 PYFVTDSEKMAVEYENC 279
T+ ++ +E+
Sbjct: 60 AATETELKEKKHRFEDA 76
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Score = 42.0 bits (99), Expect = 8e-06
Identities = 30/35 (85%), Positives = 32/35 (91%)
Query: 436 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470
GVAVI+VGA TETELKEKK R EDALNAT+AAVEE
Sbjct: 52 GVAVIRVGAATETELKEKKHRFEDALNATRAAVEE 86
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Score = 67.3 bits (164), Expect = 1e-14
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 200 VEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDR 258
DS +A V +SA ++ VG +IAEAM KVG++GV+T+E+G ++ L VVE +
Sbjct: 2 CSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLA 61
Query: 259 GYISPYFVTDSEKMAVEYENCKL 281
G ++ V + ++ ++ + ++
Sbjct: 62 GGVAVIKVGAATEVEMKEKKARV 84
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Score = 61.2 bits (148), Expect = 2e-12
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 400 QDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 459
+A+ K + +E+ + + ER+AKL+GGVAVI+VGA TE E+KEKK RVED
Sbjct: 27 AEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATEVEMKEKKARVED 86
Query: 460 ALNATKAAVEE 470
AL+AT+AAVEE
Sbjct: 87 ALHATRAAVEE 97
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Score = 61.2 bits (148), Expect = 2e-12
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 400 QDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVED 459
+A+ + + +E + ++ ER+AKL+GGVAVI+VG TE E+KE+K RV+D
Sbjct: 27 AEAMQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVGGMTEIEVKERKDRVDD 86
Query: 460 ALNATKAAVEE 470
ALNAT+AAV+E
Sbjct: 87 ALNATRAAVQE 97
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Score = 60.4 bits (146), Expect = 3e-12
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 200 VEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDR 258
V DS E+A V +SA +G IAEAM +VG +GV+T+EE K E + VVE +
Sbjct: 2 VNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKLA 61
Query: 259 GYISPYFVTDSEKMAVEYENCKL 281
G ++ V ++ V+ ++
Sbjct: 62 GGVAVIRVGGMTEIEVKERKDRV 84
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| d1kida_ | 193 | GroEL, A domain {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1sjpa2 | 184 | GroEL, A domain {Mycobacterium tuberculosis, GroEL | 100.0 | |
| d1ioka2 | 176 | GroEL, A domain {Paracoccus denitrificans [TaxId: | 100.0 | |
| d1a6db1 | 243 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1kp8a1 | 252 | GroEL, E domain {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1q3qa1 | 258 | Thermosome, E domain {Archaeon Thermococcus sp. ks | 100.0 | |
| d1a6da1 | 245 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1ioka1 | 252 | GroEL, E domain {Paracoccus denitrificans [TaxId: | 100.0 | |
| d1srva_ | 145 | GroEL, A domain {Thermus thermophilus [TaxId: 274] | 100.0 | |
| d1we3a1 | 255 | GroEL, E domain {Thermus thermophilus [TaxId: 274] | 99.97 | |
| d1gmla_ | 168 | Thermosome, A-domain {Mouse (Mus musculus), gamma | 99.8 | |
| d1assa_ | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.76 | |
| d1a6db2 | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.76 | |
| d1q3qa2 | 153 | Thermosome, A-domain {Archaeon Thermococcus sp. ks | 99.76 | |
| d1sjpa1 | 180 | GroEL, E domain {Mycobacterium tuberculosis, GroEL | 99.61 | |
| d1sjpa3 | 89 | GroEL, I domain {Mycobacterium tuberculosis, GroEL | 99.48 | |
| d1we3a3 | 86 | GroEL, I domain {Thermus thermophilus [TaxId: 274] | 99.25 | |
| d1kp8a3 | 97 | GroEL, I domain {Escherichia coli [TaxId: 562]} | 99.21 | |
| d1we3a1 | 255 | GroEL, E domain {Thermus thermophilus [TaxId: 274] | 99.19 | |
| d1ioka3 | 97 | GroEL, I domain {Paracoccus denitrificans [TaxId: | 99.15 | |
| d1ioka1 | 252 | GroEL, E domain {Paracoccus denitrificans [TaxId: | 99.05 | |
| d1kp8a1 | 252 | GroEL, E domain {Escherichia coli [TaxId: 562]} | 98.62 | |
| d1q3qa1 | 258 | Thermosome, E domain {Archaeon Thermococcus sp. ks | 98.56 | |
| d1sjpa1 | 180 | GroEL, E domain {Mycobacterium tuberculosis, GroEL | 98.45 | |
| d1q3qa3 | 107 | Thermosome, I domain {Archaeon Thermococcus sp. ks | 98.44 | |
| d1a6da3 | 105 | Thermosome, I domain {Archaeon Thermoplasma acidop | 98.36 | |
| d1a6db3 | 107 | Thermosome, I domain {Archaeon Thermoplasma acidop | 98.25 | |
| d1ioka3 | 97 | GroEL, I domain {Paracoccus denitrificans [TaxId: | 97.35 | |
| d1kp8a3 | 97 | GroEL, I domain {Escherichia coli [TaxId: 562]} | 96.66 |
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-42 Score=325.19 Aligned_cols=189 Identities=58% Similarity=0.882 Sum_probs=185.4
Q ss_pred EEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhh
Q 009601 249 YVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKL 328 (531)
Q Consensus 249 ~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~ 328 (531)
++.+||.|++||.||||+++++++.++++||+||++|.+|+++++++|+|+.+.+.+.||||++++|+++||+.|+.|+.
T Consensus 5 ~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~ 84 (193)
T d1kida_ 5 RGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM 84 (193)
T ss_dssp SCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHH
T ss_pred cccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHH
Q 009601 329 RGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVA 408 (531)
Q Consensus 329 ~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~ri~ 408 (531)
+|.++|||||+|+||+.+++.|+|||.+|||++++++.|.++++++.++||+|++|++++++|+++++.++++.+++|++
T Consensus 85 kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri~ 164 (193)
T d1kida_ 85 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA 164 (193)
T ss_dssp TTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred ccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcCCe
Q 009601 409 QIRTLIENAEQDYEREKLNERIAKLSGGV 437 (531)
Q Consensus 409 ~l~~~l~~~~~~~e~~~l~eRl~~l~g~~ 437 (531)
+|+.+++++.++|++++|++||++|+|++
T Consensus 165 ~Lk~~l~~~~~~~~~e~L~eRlakLsGGV 193 (193)
T d1kida_ 165 QIRQQIEEATSDYDREKLQERVAKLAGGV 193 (193)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999874
|
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=100.00 E-value=1e-40 Score=313.23 Aligned_cols=184 Identities=57% Similarity=0.893 Sum_probs=181.3
Q ss_pred eeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccc
Q 009601 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGAL 332 (531)
Q Consensus 253 G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~ 332 (531)
||.|++||.||||+++++++.++++||+||++|.+|+++++++|+|+.+.+.+.||||++++|+++||++|+.|+.+|.+
T Consensus 1 G~~~d~Gy~Sp~Fvt~~~~~~~~~~~p~ili~d~ki~~~~~i~p~Le~~~~~~rPLlIIA~di~~~aL~~Lv~N~~~g~l 80 (184)
T d1sjpa2 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTF 80 (184)
T ss_dssp EEEESCCBSCGGGCSBTTTTBEEEESCEEEEESSCBCCSTTTHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHTTSS
T ss_pred CCccCcCccCcccccCCCCCEEEecCCEEEEecCccCcHHHHHHHHHHhhccCCcEEEEcchhhHHHHHHHHHHHhcCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHHH
Q 009601 333 KIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRT 412 (531)
Q Consensus 333 ~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~ 412 (531)
+|||||+|+||+.+++.|+|||.+|||++++++.|.++++++.++||+|++|++++++|+++++.++++.+++|+++|+.
T Consensus 81 ~v~aVkaPgfG~~r~~~L~DlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~~~g~~~~I~~Ri~~Lk~ 160 (184)
T d1sjpa2 81 KSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQ 160 (184)
T ss_dssp CCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTTTBCSSSCCTTTSEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHH
T ss_pred heecccCCCCCcchHHHHHHHHHHhCCEEecccccccccccchhhCCeeeEEEEecCceEEecCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCC
Q 009601 413 LIENAEQDYEREKLNERIAKLSGG 436 (531)
Q Consensus 413 ~l~~~~~~~e~~~l~eRl~~l~g~ 436 (531)
+++.+.++|++++|++||++|+|+
T Consensus 161 ~l~~~~~~~e~~~L~eRLAkLsGG 184 (184)
T d1sjpa2 161 EIENSDSDYDREKLQERLAKLAGG 184 (184)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999985
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=9.3e-39 Score=297.44 Aligned_cols=176 Identities=55% Similarity=0.896 Sum_probs=130.8
Q ss_pred eeeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhccc
Q 009601 252 EGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGA 331 (531)
Q Consensus 252 ~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~ 331 (531)
+||.|++||.||||+++++++.++++||+||++|.+|+++++++|+|+.+.+.+.||+|++++|+++||++|+.|+++|.
T Consensus 1 EG~~~d~Gy~SpyFvtd~~~~~~~l~np~ILi~d~kI~~~~~i~p~Le~~~~~~~PLlIIA~di~~~aL~~Lv~N~~~g~ 80 (176)
T d1ioka2 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGG 80 (176)
T ss_dssp CCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC-----------CCCCEEEESCBC---------------
T ss_pred CCcccccCccCccceeCCcCCEEEeeCcEEEEEccccCcHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHH
Q 009601 332 LKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIR 411 (531)
Q Consensus 332 ~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~ 411 (531)
++|+|||+|+||+.+++.|+|||.+|||++++++.|.++++++.++||+|++|.+++++|++++|.++++.+++|+++|+
T Consensus 81 l~v~aVkaP~fG~~r~~~LeDlA~~tGa~vi~~~~g~~l~~~~~~~LG~a~kv~vtk~~T~ii~g~g~~~~i~~Ri~~Lk 160 (176)
T d1ioka2 81 LKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIR 160 (176)
T ss_dssp --CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEECSSCEEEESCCCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhhCCEEEecccCCChhhCCHHHCceeeEEEEecCceEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHH
Q 009601 412 TLIENAEQDYEREKLN 427 (531)
Q Consensus 412 ~~l~~~~~~~e~~~l~ 427 (531)
.+++++.++|+|++|+
T Consensus 161 ~~i~~~~s~~~rekLq 176 (176)
T d1ioka2 161 QQIEETTSDYDREKLQ 176 (176)
T ss_dssp HHHTTCCCSSHHHHHH
T ss_pred HHHHHcCCHHHHHhhC
Confidence 9999999999999985
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=100.00 E-value=4.1e-37 Score=301.78 Aligned_cols=123 Identities=30% Similarity=0.528 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCccc
Q 009601 73 YAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 152 (531)
Q Consensus 73 ~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGTT 152 (531)
++++.|++++..|+++|++||||+||+|||+++.|+++|||||+||+|++.++||. ++++++++++|++++|||||
T Consensus 2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGtt 77 (243)
T d1a6db1 2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQDSFVGDGTT 77 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHH----HHHHHHHHTCTTCCCTTHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchH----HHHHHHHHHHHHHHhhcCCc
Confidence 68899999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccc
Q 009601 153 TSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE 199 (531)
Q Consensus 153 tvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~ 199 (531)
|+++|+++||+++.+++..|+||..|++||+.+.+.+++.|++++.+
T Consensus 78 t~~vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~ 124 (243)
T d1a6db1 78 TAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK 124 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999998877665433
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-38 Score=310.85 Aligned_cols=226 Identities=43% Similarity=0.599 Sum_probs=190.9
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
+|++.|| +++|+.+++++..|+++|++||||+|+||||.+..|.|+|||||+||+++++++||++|+|++++++++.+
T Consensus 2 ak~~~fg--~dar~~ll~gi~~la~~v~~TLGP~g~~~~i~~~~g~~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~~a~~ 79 (252)
T d1kp8a1 2 AKDVKFG--NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASK 79 (252)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred CccccCC--HHHHHHHHHHHHHHHhhHHhccCCCCCeEEEEcCCCCeEEEecchheeecccccchHHHHHHHHHHHHHHh
Confidence 7999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch---hhHHhhhh-----ccC
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS---ELADVAAV-----SAG 214 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~---~l~~va~t-----s~~ 214 (531)
+++++||||||+++|++++|+++.+++..|+||..|++||+++.+.+++.|+++++++... .+..++.+ +.|
T Consensus 80 ~~~~~GDgttt~~vla~~ll~~~~~~i~~G~~p~~i~~gi~~a~~~v~~~L~~~s~~i~~~~~~~~v~~~~~~~~~k~~n 159 (252)
T d1kp8a1 80 ANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQN 159 (252)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCEEETTTHHHHHHHHHTTTCCCSS
T ss_pred hhHHhccccchhHHHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHhcceeeccCchhhhhHHHHHhhhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999998865 33333333 235
Q ss_pred ChhhHh-HHHHHHHHhh--------ccCCc---eEee--cCCCccceeEEEeeeEEeecccCCccccCcccCeeecccee
Q 009601 215 NNYEVG-NMIAEAMSKV--------GRKGV---VTLE--EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCK 280 (531)
Q Consensus 215 ~~~~l~-~li~~A~~~v--------~~~g~---I~v~--~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~k 280 (531)
+++.++ .++.+|+... +.+|. ..++ ++....|...-..|+.|++||++|+|+++...+...+.+|.
T Consensus 160 ~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~~~~~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~~a~~~~~~ 239 (252)
T d1kp8a1 160 ADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 239 (252)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHH
T ss_pred ccHHHhHHHHHHHHHHHHHHHHHhhhhcccccceeeeecCCCeeEEEEEEEEEEEEeeccCCcceeccHhhhhheeccce
Confidence 677777 5666776554 22332 1222 33333344334559999999999999998776777788888
Q ss_pred EeeeccccCC
Q 009601 281 LLLVDKKITN 290 (531)
Q Consensus 281 Ill~d~~i~~ 290 (531)
+|.+++.|.+
T Consensus 240 iL~te~~i~~ 249 (252)
T d1kp8a1 240 MITTECMVTD 249 (252)
T ss_dssp HHTEEEEEEE
T ss_pred eEeecccccC
Confidence 9988887654
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=100.00 E-value=1.7e-37 Score=307.48 Aligned_cols=221 Identities=24% Similarity=0.335 Sum_probs=178.5
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
+++..|| ++++..|+.|+..|+++|++||||+||+|||++++|+++|||||+||+++++++||. |+|++++|++
T Consensus 7 ~~~~~~g--~~a~~~~~~a~~~ia~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~a~~ 80 (258)
T d1q3qa1 7 GTQRYVG--RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKT 80 (258)
T ss_dssp TCEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHH----HHHHHHHHHH
T ss_pred CCccccC--HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEeccHHHHHHHhhhhHHH----HHHHHHHHHH
Confidence 4667888 999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhccc----ccCch-hhHHh------hhh
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK----EVEDS-ELADV------AAV 211 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~----~v~~~-~l~~v------a~t 211 (531)
|++++||||||+++|+++||+++.++++.|+||..|++||+.+.+.+++.|++++. |..+. ++... +++
T Consensus 81 ~~~~~GDGttt~~vLa~~ll~~~~~li~~G~~p~~i~~g~~~a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l~~~a~~ 160 (258)
T d1q3qa1 81 QDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQ 160 (258)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccchhHHhHHHHHhhhHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999875 33333 33322 222
Q ss_pred ccCChhhHhHHHHHHHHhhccC-----Cc---------eEeecCCCccceeEEEeeeEEe---ecccCCccccCcccCee
Q 009601 212 SAGNNYEVGNMIAEAMSKVGRK-----GV---------VTLEEGKSAENMLYVVEGMQFD---RGYISPYFVTDSEKMAV 274 (531)
Q Consensus 212 s~~~~~~l~~li~~A~~~v~~~-----g~---------I~v~~G~~~~ds~~~v~G~~~~---~~~~~p~~~~~~~~~~~ 274 (531)
..+.+....+.+++|+..+.+. |. .....+++.+..+.+++|+++| +||.+|+|+++..-+..
T Consensus 161 ~~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A 240 (258)
T d1q3qa1 161 VGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSA 240 (258)
T ss_dssp HCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhccchhhhhhhhcCCccceehhhhhhhcccCCCceEEEEECCEEeEchHcCccccHHHHHHHHHHH
Confidence 2233444456777777766431 21 1111234455666889999999 89999999875443344
Q ss_pred eccceeEeeeccccC
Q 009601 275 EYENCKLLLVDKKIT 289 (531)
Q Consensus 275 ~~~~~kIll~d~~i~ 289 (531)
...++.||.+|..|.
T Consensus 241 ~e~a~~IL~iD~iI~ 255 (258)
T d1q3qa1 241 SEAAIMILRIDDVIA 255 (258)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHhCcceeEccEEe
Confidence 456777888876654
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=100.00 E-value=7.7e-36 Score=293.30 Aligned_cols=120 Identities=31% Similarity=0.496 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCcc
Q 009601 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (531)
Q Consensus 72 ~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~~~GDGT 151 (531)
.+++..|++|+..|+++|++||||+||+|||+++.|+++|||||+||++++.++||. ++++++++++|+.++||||
T Consensus 5 ~~a~~~~~~~~~~i~~~v~~tlGP~G~~~~i~~~~g~~~it~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGt 80 (245)
T d1a6da1 5 KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT----AKMIVEVSKAQDTAVGDGT 80 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHH----HHHHHGGGGCTTTCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCCCCeEEeccHhHHhhhcchhhHH----HHHHHHHHHhhHHhhcccc
Confidence 789999999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 009601 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ 195 (531)
Q Consensus 152 TtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~ 195 (531)
||+++|+++||+++.+++..|+||..|++||+.+++.+++.|++
T Consensus 81 tt~ivla~~ll~~~~~ll~~G~~p~~i~~g~~~a~~~a~~~L~~ 124 (245)
T d1a6da1 81 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE 124 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHCCCCchhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988765
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.3e-34 Score=285.84 Aligned_cols=205 Identities=43% Similarity=0.670 Sum_probs=176.1
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 009601 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (531)
Q Consensus 62 ~~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (531)
++|++.|| +++|+.+++++..|+++|++||||+|+||||.++.|.++|||||+||+++++++||++|+|++++++++.
T Consensus 1 a~k~~~fg--~~ar~~~l~gi~~l~~~v~~tlGp~G~~v~i~~~~g~~~ITkDg~TI~~~i~~~~~~e~~~a~l~~~~a~ 78 (252)
T d1ioka1 1 AAKEVKFN--SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVAS 78 (252)
T ss_dssp CCEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCcccCC--HHHHHHHHHHHHHHHHhHHhccCCCcCeEEEEcCCCCceEEcCCceeeeccccCChHHHHHHHHHHHHHH
Confidence 37999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch---hhHHhhhh-----cc
Q 009601 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS---ELADVAAV-----SA 213 (531)
Q Consensus 142 ~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~---~l~~va~t-----s~ 213 (531)
+|++++||||||.++|+.+||+++.+++..|+||..+.+|++++.+.+++.|++++.++... .+.+++.+ +.
T Consensus 79 ~~~~~~gDgttt~~vla~~ll~~g~~~l~~G~~p~~i~~g~~~a~~~v~~~l~~~a~~i~~~g~~al~~~~~~l~~~~~~ 158 (252)
T d1ioka1 79 RTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGA 158 (252)
T ss_dssp HGGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCEEETTTHHHHHHGGGGGSCCCS
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHcCCCcchhhhhHHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999888654 55555543 34
Q ss_pred CChhhHh-HHHHH--------HHHhhccCCceEeecCCCccceeEEEe------eeEEeecccCCccccC
Q 009601 214 GNNYEVG-NMIAE--------AMSKVGRKGVVTLEEGKSAENMLYVVE------GMQFDRGYISPYFVTD 268 (531)
Q Consensus 214 ~~~~~l~-~li~~--------A~~~v~~~g~I~v~~G~~~~ds~~~v~------G~~~~~~~~~p~~~~~ 268 (531)
++++.++ +++.+ ++..+|.+|.+.+......++..+.++ |+.|++||++|+|+++
T Consensus 159 ~~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~~~~~~~g~~~~~~~~g~~~~~GiidP~kVt~ 228 (252)
T d1ioka1 159 NSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVR 228 (252)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEEEEHHHHTCEEEHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEeecccCcCCEEEEceeeeEeeeecccccCcHHHHH
Confidence 5566666 45444 445677888766644333444445555 8889999999987753
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.1e-33 Score=250.16 Aligned_cols=144 Identities=56% Similarity=0.922 Sum_probs=141.9
Q ss_pred eeEEeecccCCccccCcccCeeeccceeEeeeccccCCHHHHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHhhcccc
Q 009601 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGAL 332 (531)
Q Consensus 253 G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~ 332 (531)
||.||+||.||||+++++++.++++||+||++|.+|++.++++|+||.+.+.+.||+|++++|+++||+.|+.|+++|.+
T Consensus 1 G~~~d~Gy~Sp~Fvtd~~~~~~~l~~p~ILi~d~kI~~~~~ilp~Le~~~~~~rPLlIIA~di~~eaL~~Lv~N~~~g~l 80 (145)
T d1srva_ 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL 80 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSC
T ss_pred CCccccCccCCccccCcccCEEEecCceeeecccccccHHHHHHHHHHHHHhCCcEEEEeCccCHHHHHHHHHHHhcCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEEeCceEEEEcC
Q 009601 333 KIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGD 396 (531)
Q Consensus 333 ~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~g 396 (531)
+|+|||+|+||+.|++.|+|||.+|||++++++.|.++++++.++||+|++|++++++|++++|
T Consensus 81 ~v~aVkaP~fG~~r~~~L~DlAi~tGa~v~~~~~g~~l~~~~~~~LGsa~kv~vtkd~T~ii~G 144 (145)
T d1srva_ 81 SVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGG 144 (145)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEeCCCccHHHHHHHhhhhhhhCCEeeccccCcccccCCHHHCCcccEEEEeCCccEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=7.6e-33 Score=273.45 Aligned_cols=225 Identities=43% Similarity=0.612 Sum_probs=190.4
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 009601 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (531)
Q Consensus 63 ~k~i~~~~~~~a~~~~~~~v~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (531)
+|.+.|+ +++|+.+++++..|+++|++||||+|+||||.+++|.++|||||.||++++++++|++++||+++++++.+
T Consensus 1 ak~~~f~--~~ar~~l~~gv~~la~av~~tlGP~G~~v~i~~~~g~~~itkdg~ti~~~i~l~d~~e~~~a~~~~~~~~~ 78 (255)
T d1we3a1 1 AKILVFD--EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASK 78 (255)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCccccC--HHHHHHHHHhHHHHHHHHhcccCCCcCeEEEEcCCCCceEecchhhhhhhccccchhhhhHHHHHHHhhhh
Confidence 5889999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch-----------hhHHhhhh
Q 009601 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-----------ELADVAAV 211 (531)
Q Consensus 143 qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-----------~l~~va~t 211 (531)
|++++||||||+++|++++++++..++..|.||..+++|++++.+.+++.|+++++++... ...+....
T Consensus 79 ~~~~~gDgttt~~vl~~~~l~~~~~~i~~G~~~~~i~~g~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~ 158 (255)
T d1we3a1 79 TNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIK 158 (255)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHT
T ss_pred hHHHhhcchhHHHHHHHHHHHhhhhHHhcCCccchhhhhhhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhHhhcc
Confidence 9999999999999999999999999999999999999999999999999999998876421 22333345
Q ss_pred ccCChhhHh-HHHHHHHHhhccC-----C---ce----EeecCCCccceeEEEeeeEEe---ecccCCccccCcccCeee
Q 009601 212 SAGNNYEVG-NMIAEAMSKVGRK-----G---VV----TLEEGKSAENMLYVVEGMQFD---RGYISPYFVTDSEKMAVE 275 (531)
Q Consensus 212 s~~~~~~l~-~li~~A~~~v~~~-----g---~I----~v~~G~~~~ds~~~v~G~~~~---~~~~~p~~~~~~~~~~~~ 275 (531)
+.++++.++ +++++|+...... | .+ ......+....+.+.+|..+| +||++|||++++..+...
T Consensus 159 ~~~g~~~~g~~iva~Al~~~~~~~~~nag~~~~~~~~~~~~~~~~~~~g~d~~~g~~~D~~e~Giidp~~V~~~a~~~A~ 238 (255)
T d1we3a1 159 KLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAA 238 (255)
T ss_dssp TCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhhhHHHHHhhcccccceeeeeeeecccCCceeEEeeccEEeehhhcCCcCchHhhHHHHHHHH
Confidence 566777777 8899999875431 1 11 011222222345778899877 899999999877666667
Q ss_pred ccceeEeeeccccC
Q 009601 276 YENCKLLLVDKKIT 289 (531)
Q Consensus 276 ~~~~kIll~d~~i~ 289 (531)
..++.||.+|+.|.
T Consensus 239 ~~a~~iL~~d~~I~ 252 (255)
T d1we3a1 239 SIGALILTTEAVVA 252 (255)
T ss_dssp HHHHHHHTEEEEEE
T ss_pred HHhchHhhcchhhh
Confidence 88899999887654
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Probab=99.80 E-value=8.4e-20 Score=168.25 Aligned_cols=131 Identities=17% Similarity=0.300 Sum_probs=108.9
Q ss_pred ceeEEEeeeEEeecccCCccccCcccCeeeccceeEeeeccccC-------------CHHH-----------HHHHHHHH
Q 009601 246 NMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARD-----------LINVLEDA 301 (531)
Q Consensus 246 ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~-------------~~~~-----------l~~~le~i 301 (531)
|| ++++|++|++.+.++ +|+..++||||++++++|. ++++ +.++++++
T Consensus 1 DS-~li~Gvvi~k~~~~~-------~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I 72 (168)
T d1gmla_ 1 DS-CVLRGVMINKDVTHP-------RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDI 72 (168)
T ss_dssp CC-SEEEEEEESCCCSST-------TSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-EEEEEEEEecccCCc-------CCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 799999999998886 4888999999999999753 3322 35578899
Q ss_pred HhcCCCEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCcee
Q 009601 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (531)
Q Consensus 302 ~~~g~~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~ 381 (531)
++.|+++|+++++|++.++++|.++ +|+|++ ++++.+|++||++|||++++ +++++++++||+|
T Consensus 73 ~~~g~~vv~~~~~I~~~a~~~L~~~------gI~~~~-----rv~~~dl~ria~~tga~iv~-----si~~l~~~~lG~~ 136 (168)
T d1gmla_ 73 IQLKPDVVITEKGISDLAQHYLMRA------NVTAIR-----RVRKTDNNRIARACGARIVS-----RPEELREDDVGTG 136 (168)
T ss_dssp HTTCCSEEEESSCBCHHHHHHHHHT------TCEEEC-----CCCHHHHHHHHHHHCCCEES-----CGGGCCGGGSBCC
T ss_pred HhcCCceEEEcCCCCHHHHHHHHHC------CCeeec-----cCCHHHHHHHHHHHCCceeC-----chhhcCccccccc
Confidence 9999999999999999999999887 456666 66799999999999999998 6999999999995
Q ss_pred -eEEEE---eCceEEEEcCCCCh
Q 009601 382 -SKVVL---TKDTTTIVGDGSTQ 400 (531)
Q Consensus 382 -~~v~i---~~~~~~~~~g~~~~ 400 (531)
+.++. +++.+++|++|+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
T d1gmla_ 137 AGLLEIKKIGDEYFTFITDCKDP 159 (168)
T ss_dssp EEEEEEEEETTEEEEEEEEESST
T ss_pred ccEEEEEEECCeEEEEEEecCCC
Confidence 54443 46789999998863
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=99.76 E-value=1.4e-18 Score=157.40 Aligned_cols=125 Identities=22% Similarity=0.349 Sum_probs=108.1
Q ss_pred EeeeEEeecccCCccccCcccCeeeccceeEeeecccc-------------CCHHH-----------HHHHHHHHHhcCC
Q 009601 251 VEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNARD-----------LINVLEDAIRGAY 306 (531)
Q Consensus 251 v~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i-------------~~~~~-----------l~~~le~i~~~g~ 306 (531)
++|++|++.+.|+ +||..++||+|++++++| +++++ +.++++++.+.|+
T Consensus 1 i~Gvv~~k~~~~~-------~mp~~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~ 73 (152)
T d1assa_ 1 MSGIVIDKEKVHS-------KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA 73 (152)
T ss_dssp CCCEEESCCCSCT-------TSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEeCccCCC-------CCCccccCceEEEEecccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5799999998886 488899999999999975 34433 3456889999999
Q ss_pred CEEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE
Q 009601 307 PILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL 386 (531)
Q Consensus 307 ~lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i 386 (531)
++|+++++|++.++++|.++ +|.+++ ++++++|++||++|||++++ +++++++++||+|+++++
T Consensus 74 nvvl~~~~I~~~a~~~l~k~------gI~~v~-----~v~~~dl~ria~atGa~iv~-----s~~~l~~~~LG~~~~v~~ 137 (152)
T d1assa_ 74 NVVLCQKGIDDVAQHYLAKE------GIYAVR-----RVKKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEE 137 (152)
T ss_dssp SEEEESSCBCHHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHTCCCBS-----STTSCCTTSCEEEEEEEE
T ss_pred ceEEEeccccHHHHHHHHHc------CCcccc-----CCCHHHHHHHHHHhCCceeC-----CcccCCcccCeeeeEEEE
Confidence 99999999999999999887 456665 67799999999999999998 699999999999999974
Q ss_pred ---eCceEEEEcCCC
Q 009601 387 ---TKDTTTIVGDGS 398 (531)
Q Consensus 387 ---~~~~~~~~~g~~ 398 (531)
+++++++|+||+
T Consensus 138 ~~ig~~~~~~~~GCk 152 (152)
T d1assa_ 138 RKIGDDRMTFVMGCK 152 (152)
T ss_dssp EEETTEEEEEEESCC
T ss_pred EEECCEEEEEEecCC
Confidence 588999999984
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=99.76 E-value=1.3e-18 Score=157.66 Aligned_cols=125 Identities=22% Similarity=0.324 Sum_probs=108.0
Q ss_pred eeEEeecccCCccccCcccCeeeccceeEeeecccc-------------CCHHH-----------HHHHHHHHHhcCCCE
Q 009601 253 GMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNARD-----------LINVLEDAIRGAYPI 308 (531)
Q Consensus 253 G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i-------------~~~~~-----------l~~~le~i~~~g~~l 308 (531)
|++|++.+.|+ +||..++||||++++++| +++++ +..+++++.+.|+++
T Consensus 1 Gvv~~k~~~~~-------~mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nv 73 (152)
T d1a6db2 1 GIIVDKEKVHP-------GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANV 73 (152)
T ss_dssp EEEESCCCSST-------TSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEeccCCCC-------CCCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCce
Confidence 89999998886 488899999999999964 44443 345688999999999
Q ss_pred EEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE--
Q 009601 309 LIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL-- 386 (531)
Q Consensus 309 vI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i-- 386 (531)
||++++|++.++++|.++ +|+|++ ++++.+|++||++|||++++ +++++++++||+|+.|+.
T Consensus 74 v~~~k~Idd~a~~~l~k~------gI~~v~-----~v~~~dl~rla~~tGa~iv~-----s~~~l~~~~LG~~~~v~~~~ 137 (152)
T d1a6db2 74 VITQKGIDDMAQHYLSRA------GIYAVR-----RVKKSDMDKLAKATGASIVS-----TIDEISSSDLGTAERVEQVK 137 (152)
T ss_dssp EEESSCBCHHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHTCCEES-----CGGGCCGGGCEEEEEEEEEE
T ss_pred EEecCCCcHHHHHHHHHc------Ccchhc-----cCCHHHHHHHHHHhCCeeec-----chhhCCcccCcCceEEEEEE
Confidence 999999999999999887 456665 66799999999999999998 699999999999999974
Q ss_pred -eCceEEEEcCCCCh
Q 009601 387 -TKDTTTIVGDGSTQ 400 (531)
Q Consensus 387 -~~~~~~~~~g~~~~ 400 (531)
+++++++|+||++|
T Consensus 138 ~g~~~~~~~~gc~np 152 (152)
T d1a6db2 138 VGEDYMTFVTGCKNP 152 (152)
T ss_dssp ETTEEEEEEEEESSS
T ss_pred ECCEEEEEEeCCCCC
Confidence 57899999999874
|
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=99.76 E-value=1.6e-18 Score=157.08 Aligned_cols=126 Identities=20% Similarity=0.338 Sum_probs=109.3
Q ss_pred eeeEEeecccCCccccCcccCeeeccceeEeeecccc-------------CCHHHH-----------HHHHHHHHhcCCC
Q 009601 252 EGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNARDL-----------INVLEDAIRGAYP 307 (531)
Q Consensus 252 ~G~~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i-------------~~~~~l-----------~~~le~i~~~g~~ 307 (531)
.|++|++...|+ +|+..++||+|++++++| ++++++ ..+++++++.|++
T Consensus 1 kGvv~~k~~~~~-------~mp~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~n 73 (153)
T d1q3qa2 1 RGVVIDKEVVHP-------RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGAN 73 (153)
T ss_dssp SSEEESCCCSST-------TSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEeCCCCCc-------cCCcccCCccEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 499999998886 588899999999999975 455544 4568889999999
Q ss_pred EEEEeccchHHHHHHHHHHhhcccceEEEeecCCcCccccchHHHHHHHhCCeEEecCCCccccCCCCCCCceeeEEEE-
Q 009601 308 ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL- 386 (531)
Q Consensus 308 lvI~~~~I~~~al~~L~~n~~~g~~~i~aVk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~~~~lG~~~~v~i- 386 (531)
+|+++++|++.++++|.++ +|+|++ ++++.+|++||++|||++++ +++++++++||+|+.++.
T Consensus 74 vvl~~k~I~~~a~~~l~~~------gI~~v~-----~v~~~dl~ria~~tGa~iv~-----si~~l~~~~LG~~~~~~~~ 137 (153)
T d1q3qa2 74 VVFVQKGIDDLAQHYLAKY------GIMAVR-----RVKKSDMEKLAKATGAKIVT-----NVKDLTPEDLGYAEVVEER 137 (153)
T ss_dssp EEEESSCBCHHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHCCCCBS-----SGGGCCGGGCEEESEEEEE
T ss_pred ceeecCCCcHHHHHHHHHc------CCceec-----cCCHHHHHHHHHhhCCEEec-----chhhCCcccCeeeEEEEEE
Confidence 9999999999999999887 456666 66799999999999999998 699999999999999974
Q ss_pred --eCceEEEEcCCCCh
Q 009601 387 --TKDTTTIVGDGSTQ 400 (531)
Q Consensus 387 --~~~~~~~~~g~~~~ 400 (531)
+++++++|+||++|
T Consensus 138 ~~g~~~~~~~~gc~~P 153 (153)
T d1q3qa2 138 KLAGENMIFVEGCKNP 153 (153)
T ss_dssp EETTEEEEEEECCSSC
T ss_pred EECCeeEEEEeCCCCC
Confidence 57899999999874
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.61 E-value=5.2e-16 Score=144.02 Aligned_cols=105 Identities=42% Similarity=0.604 Sum_probs=79.7
Q ss_pred CcccchHHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccccCch--
Q 009601 126 DPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-- 203 (531)
Q Consensus 126 hP~~~~gakll~~~a~~qd~~~GDGTTtvvvLa~~LL~~a~~li~~Gi~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~-- 203 (531)
||+||+||+|+++++.++++++||||||++||++++++++.+++..|.||..|.+||+.|++.+++.|+++++++...
T Consensus 1 d~~e~~ga~lv~~~a~~~~~~~GDGTTTatVLa~~i~~e~~~~i~~g~~p~~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~ 80 (180)
T d1sjpa1 1 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKIVAGGGV 80 (180)
T ss_dssp CHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBEEETTTT
T ss_pred CcchhHhHHHHHHHHHhhHHHcCCCchHHHHHHHHHHHHHHHHhhCCCChHHHHhhHHHHHHHHHHHHHHHHhhhcchhh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred hhHH----hhhhccCChh-hHhHHHHHHHHhh
Q 009601 204 ELAD----VAAVSAGNNY-EVGNMIAEAMSKV 230 (531)
Q Consensus 204 ~l~~----va~ts~~~~~-~l~~li~~A~~~v 230 (531)
.+.. +.....++++ .-.+++.+|+...
T Consensus 81 ~~l~a~~al~~~~~~~~e~~g~~i~~~Al~~p 112 (180)
T d1sjpa1 81 TLLQAAPTLDELKLEGDEATGANIVKVALEAP 112 (180)
T ss_dssp TTTTTGGGGGGSCCCTHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 2222 1122233343 3455777777653
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.48 E-value=2e-15 Score=122.73 Aligned_cols=86 Identities=30% Similarity=0.423 Sum_probs=77.3
Q ss_pred cCch-hhHHhhhhccCChhhHhHHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCc-ccCeeecc
Q 009601 200 VEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDS-EKMAVEYE 277 (531)
Q Consensus 200 v~~~-~l~~va~ts~~~~~~l~~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~-~~~~~~~~ 277 (531)
|+++ ++.+||++|. +|+.++++|++|+.++|++|+|+++.|.+.++++++++|++|++||.||||+++. .++...++
T Consensus 2 V~~~e~i~~VAtISa-~D~~iG~lIa~A~~kVG~dGvItvEe~~~~~t~le~veG~~~d~Gy~Sp~fvtd~k~r~e~~l~ 80 (89)
T d1sjpa3 2 VETKEQIAATAAISA-GDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEVAVIKAGAATEVELKERKHRIEDAVR 80 (89)
T ss_dssp CCSHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTSCEEEEEESSSSEEEEEESEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhhheec-CCHHHHHHHHHHHHhcCCCCceEEEeccccceEEEEEEEEEecCCccCceEEcccHHhhHHHHh
Confidence 3444 7999999998 6999999999999999999999999999999999999999999999999999864 45667899
Q ss_pred ceeEeeecc
Q 009601 278 NCKLLLVDK 286 (531)
Q Consensus 278 ~~kIll~d~ 286 (531)
||+||++|.
T Consensus 81 ~p~ili~dG 89 (89)
T d1sjpa3 81 NAKAAVEEG 89 (89)
T ss_dssp HHHHHHHHC
T ss_pred CceEeeecC
Confidence 999998763
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=1e-12 Score=105.37 Aligned_cols=73 Identities=34% Similarity=0.476 Sum_probs=67.5
Q ss_pred hhHHhhhhccCChhhHhHHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeecccee
Q 009601 204 ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCK 280 (531)
Q Consensus 204 ~l~~va~ts~~~~~~l~~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~~~k 280 (531)
+|.+||++|.| |+.+++||++|+.++|++|+|+++.|.+.++++++++|+.|++ +|||+++.++|.++|+||.
T Consensus 5 ~i~~VAtISAn-D~~iG~lIAeA~~kVG~dGvItVEes~t~~t~levveG~~~~~---s~~fvtd~~~~~~elenpL 77 (86)
T d1we3a3 5 AIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVGVAVIRV---GAATETELKEKKHRFEDAL 77 (86)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHTTCTTSEEEEEECSSSSCEEEEECEEEEEE---CCSSHHHHHHHHHHHHHHH
T ss_pred HHhhheeeecC-CHHHHHHHHHHHHHcCCCceEEEEecCCCCeEEEEEEeeeccc---ceeeeeehhhcEEEEeCcH
Confidence 78999999995 8999999999999999999999999999999999999998854 5899999999999999983
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=5.5e-13 Score=110.32 Aligned_cols=73 Identities=37% Similarity=0.523 Sum_probs=68.4
Q ss_pred ccCch-hhHHhhhhccCChhhHhHHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCccc
Q 009601 199 EVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEK 271 (531)
Q Consensus 199 ~v~~~-~l~~va~ts~~~~~~l~~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~ 271 (531)
|++++ +|.+||++|.|+|+.++++|++|+.++|.+|+|+++.|.+.++++++++||.|++||.+|||++++..
T Consensus 1 Pv~~~~~i~~VAtISan~D~~iG~lIa~a~~~vg~dGvitvee~~~~~~~~~ivEG~~~d~G~vS~~fvt~~te 74 (97)
T d1kp8a3 1 PCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATE 74 (97)
T ss_dssp CCCSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSEEEEECCSSSSCEEEEEHHHHHHHHCEEEEECCCSSH
T ss_pred CCCCHHHHhhheeEecCCcHHHHHHHHHHHHHhcccceEEEeccccchhHHHHHHHHHhhcCCccceeecCcch
Confidence 56776 89999999999999999999999999999999999999999999999999999999999999986543
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=3e-12 Score=124.62 Aligned_cols=137 Identities=34% Similarity=0.424 Sum_probs=108.6
Q ss_pred EEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhhhHHHH-----------HHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Q 009601 384 VVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYER-----------EKLNERIAKLSGGVAVIQVGAQTETELKE 452 (531)
Q Consensus 384 v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~~~~e~-----------~~l~eRl~~l~g~~~tI~l~G~t~~~l~E 452 (531)
..++++.++++..-..+..++.+..++..++..++.++.. +.+++....+ .-|..+..++++
T Consensus 45 ~~itkdg~ti~~~i~l~d~~e~~~a~~~~~~~~~~~~~~gDgttt~~vl~~~~l~~~~~~i-------~~G~~~~~i~~g 117 (255)
T d1we3a1 45 PTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNV-------AAGANPLALKRG 117 (255)
T ss_dssp CEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH-------HTTCCHHHHHHH
T ss_pred ceEecchhhhhhhccccchhhhhHHHHHHHhhhhhHHHhhcchhHHHHHHHHHHHhhhhHH-------hcCCccchhhhh
Confidence 4567776666666556677888899998888887666632 3344433332 333445788899
Q ss_pred HHHHHHHHHHHHHHHHHcC-eeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 009601 453 KKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528 (531)
Q Consensus 453 ~~~~i~Dal~a~k~a~~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 528 (531)
.++++++++++++...++. ++||||+++++++..++.+.....+.+| +|+++|++||+.||+++++|+|+++.++
T Consensus 118 ~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~~~~g~~~-~g~~iva~Al~~~~~~~~~nag~~~~~~ 193 (255)
T d1we3a1 118 IEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEA-TGAKIVRRALEEPARQIAENAGYEGSVI 193 (255)
T ss_dssp HHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred hhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhHhhccCCChHHH-HHHHHHHHHHhhhHHHHHhhccccccee
Confidence 9999999999999977765 9999999999999999998877766665 9999999999999999999999998754
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=3.2e-12 Score=105.35 Aligned_cols=82 Identities=37% Similarity=0.428 Sum_probs=72.2
Q ss_pred ccCch-hhHHhhhhccCChhhHhHHHHHHHHhhccCCceEeecCCCccceeEEEeeeEEeecccCCccccCcccCeeecc
Q 009601 199 EVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYE 277 (531)
Q Consensus 199 ~v~~~-~l~~va~ts~~~~~~l~~li~~A~~~v~~~g~I~v~~G~~~~ds~~~v~G~~~~~~~~~p~~~~~~~~~~~~~~ 277 (531)
|++++ +|.+||++|.|+++.++++|++|+.++|.+|+|+++.|.+.++++++++||.|++||++|||+++++.+ ++.
T Consensus 1 Pv~~~~~i~~VAtISan~d~~IG~lIa~a~~~Vg~~GvitvEe~~~~~t~~~ivEG~~~~~GyiS~~fv~~~t~~--E~~ 78 (97)
T d1ioka3 1 PVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVGGMTEI--EVK 78 (97)
T ss_dssp CCCSTTTTTHHHHHTTTTCHHHHHHHHHHHHHHCTTSCCCCEECSSSCCEEEEEHHHHTTSSCEEEEEECCSSHH--HHH
T ss_pred CCCCHHHhheeeeeecCCchHHHHHHHHHHHHhCCCceEEeccccchhhhhhHhhhhhhhhccccccccCCCcee--eee
Confidence 56666 899999999999999999999999999999999999999999999999999999999999999876544 344
Q ss_pred ceeEe
Q 009601 278 NCKLL 282 (531)
Q Consensus 278 ~~kIl 282 (531)
++|..
T Consensus 79 ekk~~ 83 (97)
T d1ioka3 79 ERKDR 83 (97)
T ss_dssp HHHHH
T ss_pred eccce
Confidence 44433
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.05 E-value=2.9e-11 Score=117.41 Aligned_cols=180 Identities=24% Similarity=0.374 Sum_probs=132.3
Q ss_pred EeecCCcC-ccccchHHHHHHHhCCeEEecCCCccccCCC-CCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHH
Q 009601 336 ALKAPGFG-ERKSQYLDDIAILTGGTVIRDEVGLALDKVG-KEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTL 413 (531)
Q Consensus 336 aVk~~~~~-~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~~-~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~ 413 (531)
|+|.|.|| +.|+..|+++..++++ +...+|++-.+.- .+..|. ..+++|.+++..+-..+..++.++.++..+
T Consensus 1 a~k~~~fg~~ar~~~l~gi~~l~~~--v~~tlGp~G~~v~i~~~~g~---~~ITkDg~TI~~~i~~~~~~e~~~a~l~~~ 75 (252)
T d1ioka1 1 AAKEVKFNSDARDRMLKGVNILADA--VKVTLGPKGRNVVIDKSFGA---PRITKDGVSVAKEIELSDKFENMGAQMVRE 75 (252)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHHHHH--HGGGCSTTCCEEEECCSSSS---CEEECCHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHh--HHhccCCCcCeEEEEcCCCC---ceEEcCCceeeeccccCChHHHHHHHHHHH
Confidence 46778899 5588899999999865 3333444322211 123332 456788777887777778899999999888
Q ss_pred HHhhhhH-----------HHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeeccCchhHhH
Q 009601 414 IENAEQD-----------YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR 482 (531)
Q Consensus 414 l~~~~~~-----------~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~gvVpGGGa~el~ 482 (531)
....+.+ +-.+.+++.+..+. .|.++.++.+-.++..|++.....++..|++||||.+.++
T Consensus 76 ~a~~~~~~~gDgttt~~vla~~ll~~g~~~l~--------~G~~p~~i~~g~~~a~~~v~~~l~~~a~~i~~~g~~al~~ 147 (252)
T d1ioka1 76 VASRTNDEAGDGTTTATVLAQAIVREGLKAVA--------AGMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQ 147 (252)
T ss_dssp HHHHGGGGCSTHHHHHHHHHHHHHHHHHHHHH--------TTCCHHHHHHHHHHHHHHHHHHHHTTCBCEEETTTHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH--------cCCCcchhhhhHHHHHHHHHHHHHHhcCCCCCchHHhhHH
Confidence 8775333 22345555554443 3668888888777777777777777778999999999999
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 483 LSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 483 ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++..|.... ..+.++.+|++++.+||+.|.+++++|+|.|+..+++
T Consensus 148 ~~~~l~~~~--~~~~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~ 193 (252)
T d1ioka1 148 GAKVLEGLS--GANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAG 193 (252)
T ss_dssp HGGGGGSCC--CSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhhh--cccchHHHHHHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 998886543 3456677999999999999999999999999987764
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=3.6e-09 Score=102.32 Aligned_cols=176 Identities=24% Similarity=0.393 Sum_probs=116.5
Q ss_pred EeecCCcC-ccccchHHHHHHHhCCeEEecCCCccccCC-CCCCCceeeEEEEeCceEEEEcCCCChhhHHHHHHHHHHH
Q 009601 336 ALKAPGFG-ERKSQYLDDIAILTGGTVIRDEVGLALDKV-GKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTL 413 (531)
Q Consensus 336 aVk~~~~~-~~~~~~L~~ia~~tGa~ii~~~~~~~l~~~-~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~ 413 (531)
|.|.|.|| +.|+..|++++.++++ +...+|++-.+. -.+..| ...+++|.+++...-..+..++.++.++.++
T Consensus 1 ~ak~~~fg~dar~~ll~gi~~la~~--v~~TLGP~g~~~~i~~~~g---~~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~ 75 (252)
T d1kp8a1 1 AAKDVKFGNDAGVKMLRGVNVLADA--VKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDKFENMGAQMVKE 75 (252)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHHHHH--HHTTCSTTCCEEEECCSSS---SCEEECCHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHHhh--HHhccCCCCCeEEEEcCCC---CeEEEecchheeecccccchHHHHHHHHHHH
Confidence 45788999 6688999999999865 443344432221 112233 2445666666655444556677777777777
Q ss_pred HHhhhhHH-----------HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHH---cCeeccCchh
Q 009601 414 IENAEQDY-----------EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE---EGIVVGGGCT 479 (531)
Q Consensus 414 l~~~~~~~-----------e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~---~gvVpGGGa~ 479 (531)
+.....++ -++.+++-+..+ -.|.+..++. +.++.|...+...++ .++.+|++..
T Consensus 76 ~a~~~~~~~GDgttt~~vla~~ll~~~~~~i--------~~G~~p~~i~---~gi~~a~~~v~~~L~~~s~~i~~~~~~~ 144 (252)
T d1kp8a1 76 VASKANDAAGDGTTTATVLAQAIITEGLKAV--------AAGMNPMDLK---RGIDKAVTVAVEELKALSVGVVAGGGVA 144 (252)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH--------HTTCCHHHHH---HHHHHHHHHHHHHHHHHCBCEEETTTHH
T ss_pred HHHhhhHHhccccchhHHHHHHHHHHHHHHH--------HcCCcchhhh---hhhhhHHHHHHHHHHhcceeeccCchhh
Confidence 66654333 234444443333 3455665544 445555555555555 4799999999
Q ss_pred HhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 009601 480 LLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVS 529 (531)
Q Consensus 480 el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~ 529 (531)
.++++..+.... ..+.++.+|.+++.+||+.|.++++.|+|.++.+++
T Consensus 145 ~v~~~~~~~~~k--~~n~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~ 192 (252)
T d1kp8a1 145 LIRVASKLADLR--GQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVA 192 (252)
T ss_dssp HHHHHHHTTTCC--CSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHH
T ss_pred hhHHHHHhhhhc--ccCccHHHhHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 999988776543 346677799999999999999999999999987765
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=98.56 E-value=6.8e-09 Score=100.63 Aligned_cols=140 Identities=19% Similarity=0.211 Sum_probs=98.1
Q ss_pred EEEEeCceEEEEcCCCChhhHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHH
Q 009601 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAE-------QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKL 455 (531)
Q Consensus 383 ~v~i~~~~~~~~~g~~~~~~i~~ri~~l~~~l~~~~-------~~~e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~ 455 (531)
...+++|..+++..-.-......-+.++..+.+... .-+-.+.+++-...+..+ -....+.+..+.
T Consensus 50 ~~~iT~Dg~ti~~~~~~~~~~a~~~~~~a~~~~~~~GDGttt~~vLa~~ll~~~~~li~~G-------~~p~~i~~g~~~ 122 (258)
T d1q3qa1 50 DIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQN-------IHPSIITKGYAL 122 (258)
T ss_dssp CEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHH
T ss_pred CeEEeccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHccccchhHHhHHHHHhhhHHHHhcC-------CChhHHHHHHHH
Confidence 344555554444432222233444444444443321 113345666654444332 224566688888
Q ss_pred HHHHHHHHHHHHHHcCeeccCchhHhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 456 RVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 456 ~i~Dal~a~k~a~~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++++++..++....+.++||||+.|+..+..+..++....+.++ +++++|++||+.||++|++|+|+|+.+++.
T Consensus 123 a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l~~~a~~~~~~~~-~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~ 196 (258)
T d1q3qa1 123 AAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEA-LAIENFADALKIIPKTLAENAGLDTVEMLV 196 (258)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHTTHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHhhhcccchHHH-HHHHHHHHhccchhhhhhhhcCCccceehh
Confidence 99999999988877789999999999999999999988877777 899999999999999999999999987653
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=98.45 E-value=3.7e-08 Score=90.22 Aligned_cols=95 Identities=35% Similarity=0.527 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC--eeccCchhHhHHHHHHHHHhccCCChHH
Q 009601 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG--IVVGGGCTLLRLSSKVDAIKETLDNDEE 499 (531)
Q Consensus 422 e~~~l~eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~g--vVpGGGa~el~ls~~L~~~~~~~~~~eq 499 (531)
-+..+++.+..++. |.+.. ++++.+++|+..+...++++ .+||||..++++...+... +..+ +|
T Consensus 33 a~~i~~e~~~~i~~--------g~~p~---~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~~~l~a~~al~~~--~~~~-~e 98 (180)
T d1sjpa1 33 AQALVREGLRNVAA--------GANPL---GLKRGIEKAVEKVTETLLKGAKIVAGGGVTLLQAAPTLDEL--KLEG-DE 98 (180)
T ss_dssp HHHHHHHHHHHHHT--------TCCHH---HHHHHHHHHHHHHHHHHHHTCBEEETTTTTTTTTGGGGGGS--CCCT-HH
T ss_pred HHHHHHHHHHHhhC--------CCChH---HHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHhhh--hhhh-HH
Confidence 34455554444433 44444 56789999999999999887 9999999999887777643 3445 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 009601 500 KVGADIVKRALCYPLKLIAKNAGVNGSVVSE 530 (531)
Q Consensus 500 ~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~ 530 (531)
++++++|++||+.||++|++|||+||..+++
T Consensus 99 ~~g~~i~~~Al~~p~~~I~~NaG~~~~~v~~ 129 (180)
T d1sjpa1 99 ATGANIVKVALEAPLKQIAFNSGLEPGVVAE 129 (180)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhhh
Confidence 5899999999999999999999999987654
|
| >d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=98.44 E-value=2.2e-08 Score=83.97 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=63.3
Q ss_pred Cch-hhHHhhhhccCC------hhhHhHHHHHHHHhhccC--C-------ceE--eecCCCccceeEEEeeeEEeecccC
Q 009601 201 EDS-ELADVAAVSAGN------NYEVGNMIAEAMSKVGRK--G-------VVT--LEEGKSAENMLYVVEGMQFDRGYIS 262 (531)
Q Consensus 201 ~~~-~l~~va~ts~~~------~~~l~~li~~A~~~v~~~--g-------~I~--v~~G~~~~ds~~~v~G~~~~~~~~~ 262 (531)
+|. .|.++|+||+.+ .++|++|+++|+..+.+. | .|+ ...||+++|| ++++|++|++.
T Consensus 4 ~D~e~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~Iki~K~~Ggsv~dS-~lv~G~vl~k~--- 79 (107)
T d1q3qa3 4 DDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEES-ELVKAVTILIR--- 79 (107)
T ss_dssp TCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGC-EEESSEEEEEE---
T ss_pred cHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhcccCCCcccchHHEEEEEecCCChhhC-EEEccEEEEcc---
Confidence 344 799999999854 589999999999999652 1 244 3689999999 99999999973
Q ss_pred CccccCcccCeeeccceeEeeeccccC
Q 009601 263 PYFVTDSEKMAVEYENCKLLLVDKKIT 289 (531)
Q Consensus 263 p~~~~~~~~~~~~~~~~kIll~d~~i~ 289 (531)
| +||..++||+|+++|+++.
T Consensus 80 ~-------~mp~~i~n~ki~lld~~le 99 (107)
T d1q3qa3 80 G-------GTEHVIDEVERALEDAVKV 99 (107)
T ss_dssp E-------SSHHHHHHHHHHHHHHHHH
T ss_pred C-------CCCcccCCcCEeeccCcHH
Confidence 3 4788899999999999753
|
| >d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=98.36 E-value=7.4e-08 Score=80.37 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=60.6
Q ss_pred hhHHhhhhccCC------hhhHhHHHHHHHHhhccC--C-------ceE--eecCCCccceeEEEeeeEEeecccCCccc
Q 009601 204 ELADVAAVSAGN------NYEVGNMIAEAMSKVGRK--G-------VVT--LEEGKSAENMLYVVEGMQFDRGYISPYFV 266 (531)
Q Consensus 204 ~l~~va~ts~~~------~~~l~~li~~A~~~v~~~--g-------~I~--v~~G~~~~ds~~~v~G~~~~~~~~~p~~~ 266 (531)
.|.++|+||+++ .++|++|+++|+..+.+. | .|+ ...|++++|| ++++|+++++. |
T Consensus 5 ~L~~va~Tsl~~K~~~~~~d~ls~l~vdAv~~v~~~~~g~~~~d~~~I~i~k~~Ggs~~dS-~lv~G~vl~k~---~--- 77 (105)
T d1a6da3 5 TLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDT-QFISAVSILIR---G--- 77 (105)
T ss_dssp HHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTC-EEESCEEEEEC---C---
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHhccccCCCceecHHHhhhhhccCCChhhe-eeeeccceecc---C---
Confidence 688999998754 589999999999999642 1 243 3699999999 99999999873 3
Q ss_pred cCcccCeeeccceeEeeecccc
Q 009601 267 TDSEKMAVEYENCKLLLVDKKI 288 (531)
Q Consensus 267 ~~~~~~~~~~~~~kIll~d~~i 288 (531)
.||..++|++|+++|+++
T Consensus 78 ----~mp~~~~~~kialld~~~ 95 (105)
T d1a6da3 78 ----GTDHVVSEVERALNDAIR 95 (105)
T ss_dssp ----SSSTTHHHHHHHHHHHHH
T ss_pred ----CCCcccCCcCeeEecchh
Confidence 477788999999999864
|
| >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=98.25 E-value=4e-08 Score=82.36 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=59.9
Q ss_pred hhHHhhhhccCC------hhhHhHHHHHHHHhhccC--C-------ceEe--ecCCCccceeEEEeeeEE-----eeccc
Q 009601 204 ELADVAAVSAGN------NYEVGNMIAEAMSKVGRK--G-------VVTL--EEGKSAENMLYVVEGMQF-----DRGYI 261 (531)
Q Consensus 204 ~l~~va~ts~~~------~~~l~~li~~A~~~v~~~--g-------~I~v--~~G~~~~ds~~~v~G~~~-----~~~~~ 261 (531)
.|.++|+||+++ .++|++|+++|+..+.+. | .|++ ..|++++|| ++++|+++ ++...
T Consensus 7 ~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~IkI~k~~Ggs~~dS-~li~G~v~~~~~~~k~~~ 85 (107)
T d1a6db3 7 LLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDT-QLINKAVSILVRGETEHV 85 (107)
T ss_dssp HHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGC-EEESSCEEEEEEESSHHH
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhcccCCCcccCHHHeEEEeecCCChhhc-EEEeccceeeccCCceec
Confidence 788999998754 589999999999999542 1 2443 689999999 99999776 33333
Q ss_pred CCccccCcccCeeeccceeEeeeccccC
Q 009601 262 SPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (531)
Q Consensus 262 ~p~~~~~~~~~~~~~~~~kIll~d~~i~ 289 (531)
+| +||..++|+ |+++||+|.
T Consensus 86 ~~-------~Mpk~i~n~-I~lld~~LE 105 (107)
T d1a6db3 86 VD-------EMERSITDS-LHVVASALE 105 (107)
T ss_dssp HH-------HHHHHHHHH-HHHHHHHHH
T ss_pred cC-------CCCccccCc-EEEEecCCc
Confidence 33 588999998 999998764
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.35 E-value=0.00015 Score=58.67 Aligned_cols=43 Identities=72% Similarity=0.975 Sum_probs=40.5
Q ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 009601 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470 (531)
Q Consensus 428 eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~ 470 (531)
||+.+++|.++.+.++++++.+++|++.+++|||+++|+|+++
T Consensus 55 EG~~~~~GyiS~~fv~~~t~~E~~ekk~~veDAl~a~raa~~e 97 (97)
T d1ioka3 55 ERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQE 97 (97)
T ss_dssp HHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccCCCceeeeeeccceeecCHHHHHHHhcC
Confidence 5788899999999999999999999999999999999999874
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.0011 Score=53.41 Aligned_cols=43 Identities=79% Similarity=1.036 Sum_probs=39.7
Q ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 009601 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470 (531)
Q Consensus 428 eRl~~l~g~~~tI~l~G~t~~~l~E~~~~i~Dal~a~k~a~~~ 470 (531)
||+.+++|.++.+.+.+.++.+++|.+.+++|+|+++|+|+++
T Consensus 55 EG~~~d~G~vS~~fvt~~te~E~~ekk~~veDaL~a~~aA~~e 97 (97)
T d1kp8a3 55 ERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEE 97 (97)
T ss_dssp HHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccceeecCcchhhhhhceeEEechHHHHHHHhcC
Confidence 4677788999999999999999999999999999999999874
|