Citrus Sinensis ID: 009603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
Protein Sequence
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWAMDYL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccEEEEccccccccccccccccccccccccEEccccccccccccEEEEcccccEEEEEEEEEcccccccccccEEEEEEEcEEEEEEEcccccccccEEEEEEEEEccccEEEEEEEccccccEEEEEEEEEcccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHHHHHccccccccccEEEEccccccccEEEEEEEEccccccccccccEEEEEEccccccccccccccccccEEEEEEEEEEEEEcEEEEEEEccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccccccEEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEccccHccccccccccHHHccccccEEEccccccccccEEEEEcccccEEEEEEEEEEccccccccccEEEEEEcccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEccccccEEEEEEEcccccccccccccccccEEEEEEEEEcccccccccEEEccccccccccEEEccccccccccccEEEEEEccccccccccccHHHHHHccccccccccEEEEccccccccEEEEEEEHHHHHHcccccEEEEEEEEcccEccccccHHHcccccEEEEEcccccccccEEEEEEEccccccccEEEEEEEEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEEccccccc
Coil and Loop (DISEMBL)
MLRFHFLWLLVFCSAlnsssarhapfamriscgarqnihspptntlwfkdfaytggipanatrpsfitpplktlryfplsegpencyiinrvpkghynvRIFFGLvtltsfdheplfdisvegtqiyslksgwsdhdDRAFAEALVFLRDGTvsicfhstghgdpailSLEIlqvddkayyfgqgwgeGLILRTAtrlscgngkpkfdvdysgdhwggdrfwnpilsfgqnadqrrSTESSIKQaskapnfypealYQTAlvstdsqpdlqytmdvdpnrnySIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAvngrtltvtlhpkggsHAIINAIEVFEIIAVESKTLPEEVRALQVLKnsldlphrfgwngdpcvpqqhpwsgadcqfdrtshkwvidglgldnqglrgflpngiskLRHLQSInlsgnsirgaipsslgtiASLEVLDLSynffngsipesLGQLTALRRLNLngntlsgrvpaalggrllhrASFKYVWAMDYL
Flexible Loop (DISEMBL)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPanatrpsfitppLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWAMDYL
Low Complexity Region (SEG)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWAMDYL
Disordered region (IsUnstruct)
**RFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFG*********************FYPEALYQTALVST****DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWAMD**
Disordered Region (DISOPRED)
*LRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN********PPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWAMDYL
Disordered Region (DISEMBL)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQN**************SKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWAMDYL
Disordered Region (DISPRO)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWA**YL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWAMDYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	531	2.2.26 [Sep-21-2011]
Q9ZQQ7	886	Putative leucine-rich rep	no	no	0.851	0.510	0.298	3e-36
Q9LIG2	899	Receptor-like protein kin	no	no	0.877	0.518	0.277	6e-35
Q9SNA3	889	Putative receptor-like pr	no	no	0.824	0.492	0.271	2e-33
Q9ZQR3	868	Leucine-rich repeat recep	no	no	0.822	0.503	0.278	2e-33
Q9FN94	868	Receptor-like protein kin	no	no	0.819	0.501	0.285	2e-32
C0LGG3	885	Probable LRR receptor-lik	no	no	0.860	0.516	0.256	2e-31
O81069	884	Probable leucine-rich rep	no	no	0.741	0.445	0.269	4e-31
Q9FZB1	872	Probable LRR receptor-lik	no	no	0.738	0.449	0.285	7e-30
Q9SI06	892	Putative leucine-rich rep	no	no	0.768	0.457	0.263	3e-29
C0LGD9	871	Probable LRR receptor-lik	no	no	0.845	0.515	0.274	1e-28

>sp|Q9ZQQ7|Y2144_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=1 SV=1

 Score =  153 bits (387), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 145/485 (29%), Positives = 210/485 (43%), Gaps = 33/485 (6%)

Query: 41  PPTNTLWFKDFAYT-GGIPANATRPS---FITPPLKTLRYFPLSEGPENCYIINRVPKGH 96
           P TN  +  D  +  GG   N    S   F + P K LRYFP  EG  NCY ++      
Sbjct: 46  PLTNLTYISDVNFVRGGKTGNIKNNSDIDFTSRPYKVLRYFP--EGIRNCYSLSVKQGTK 103

Query: 97  YNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSIC 156
           Y +R  F        +  P FD+ +      S+     D  D    E +   R   + IC
Sbjct: 104 YLIRTLFFYGNYDGLNTSPRFDLFLGPNIWTSVDVQKVDGGDGVIEEIIHVTRCNILDIC 163

Query: 157 FHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHW 216
              TG   P I ++E+  +    Y    G  + ++    T     +GK   +V Y  D +
Sbjct: 164 LVKTGTTTPMISAIELRPLRYDTYTARTGSLKKILHFYFT----NSGK---EVRYPEDVY 216

Query: 217 GGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYT-MD 275
             DR W P     Q    + +T  ++   S   N  P+ + +TA + T+    L +T M 
Sbjct: 217 --DRVWIP---HSQPEWTQINTTRNVSGFSDGYN-PPQDVIKTASIPTNVSEPLTFTWMS 270

Query: 276 VDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTV 335
              +     +L+FAEI   +     R F IL+NG      V  +     ++ A  L T  
Sbjct: 271 ESSDDETYAYLYFAEIQQ-LKANETRQFKILVNG------VYYIDYIPRKFEAETLITPA 323

Query: 336 AVN--GRTLTVTLH--PKGGSHAIINAIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPH 390
           A+   G    V L   PK      +NAIE+F +I   +S T  +EV A++ ++++  +  
Sbjct: 324 ALKCGGGVCRVQLSKTPKSTLPPQMNAIEIFSVIQFPQSDTNTDEVIAIKNIQSTYKV-S 382

Query: 391 RFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSIN 450
           R  W GDPCVP Q  W G  C     S    I  L L + GL G +   I  L  L+ ++
Sbjct: 383 RISWQGDPCVPIQFSWMGVSCNVIDISTPPRIISLDLSSSGLTGVITPSIQNLTMLRELD 442

Query: 451 LSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPA 510
           LS N++ G IP SL  +  L  LDLS N   G +PE L  +  L  ++L GN L G VP 
Sbjct: 443 LSNNNLTGVIPPSLQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQ 502

Query: 511 ALGGR 515
           AL  R
Sbjct: 503 ALQDR 507

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LIG2|RLK6_ARATH Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1

 Score =  149 bits (376), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 145/523 (27%), Positives = 234/523 (44%), Gaps = 57/523 (10%)

Query: 2   LRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQN---IHSPPTNTLWFKD--FAYTG- 55
           +R   L  + F + L+   A+     + + CG+  N    + P T   +  D  F  +G 
Sbjct: 8   IRLCALIFISFYALLHLVEAQDQKGFISLDCGSLPNEPPYNDPSTGLTYSTDDGFVQSGK 67

Query: 56  -GIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHE 114
            G    A    F  P LK LRYFP  +G  NCY +N     +Y ++  F        ++ 
Sbjct: 68  TGRIQKAFESIFSKPSLK-LRYFP--DGFRNCYTLNVTQDTNYLIKAVFVYGNYDGLNNP 124

Query: 115 PLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQ 174
           P FD+ + G  ++ +    +   +    E +      ++ +C   TG   P I +LE+  
Sbjct: 125 PSFDLYL-GPNLW-VTVDMNGRTNGTIQEIIHKTISKSLQVCLVKTGTSSPMINTLELRP 182

Query: 175 VDDKAYYFGQGWGEGLILRTATRLS-CGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNAD 233
           + +  Y    G      L+   R    G+G+   ++ Y  D    DR W P        D
Sbjct: 183 LKNNTYNTQSGS-----LKYFFRYYFSGSGQ---NIRYPDDV--NDRKWYPFF------D 226

Query: 234 QRRSTESSIKQASKAPNFY--PEALYQTAL--VSTDSQPDLQYTMDVDPNRNYSIWLHFA 289
            +  TE +      + N Y  PE +  +A   +ST    +  + +     + Y +++HFA
Sbjct: 227 AKEWTELTTNLNINSSNGYAPPEVVMASASTPISTFGTWNFSWLLPSSTTQFY-VYMHFA 285

Query: 290 EIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGR--------- 340
           EI  T+  +  R F + +NG +A++          RY+   L T                
Sbjct: 286 EIQ-TLRSLDTREFKVTLNGKLAYE----------RYSPKTLATETIFYSTPQQCEDGTC 334

Query: 341 TLTVTLHPKGGSHAIINAIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPC 399
            L +T  PK     ++NA+EVF +I   + +T P++V A++ ++++  L  +  W GDPC
Sbjct: 335 LLELTKTPKSTLPPLMNALEVFTVIDFPQMETNPDDVAAIKSIQSTYGL-SKISWQGDPC 393

Query: 400 VPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA 459
           VP+Q  W G +C     S   ++  L L +  L G +  GI  L HLQ ++LS N++ G 
Sbjct: 394 VPKQFLWEGLNCNNLDNSTPPIVTSLNLSSSHLTGIIAQGIQNLTHLQELDLSNNNLTGG 453

Query: 460 IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           IP  L  I SL V++LS N FNGSIP+ L Q   L +L L GN
Sbjct: 454 IPEFLADIKSLLVINLSGNNFNGSIPQILLQKKGL-KLILEGN 495

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SNA3|Y3463_ARATH Putative receptor-like protein kinase At3g46340 OS=Arabidopsis thaliana GN=At3g46340 PE=3 SV=1

 Score =  144 bits (363), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 210/472 (44%), Gaps = 34/472 (7%)

Query: 28  MRISCGARQNIHSP---PTNTLWFK-DFAYTGGIPANATRPSFITPPLK---TLRYFPLS 80
           + + CG   N  SP   P   L F  D ++           SF    LK   TLRYFP  
Sbjct: 33  ISLDCGLPPNEVSPYIEPFTGLRFSSDSSFIQSGKIGKVDKSFEATTLKSYMTLRYFP-- 90

Query: 81  EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRA 140
           +G  NCY +       Y +R           +  P FD+ +      +L +G  ++    
Sbjct: 91  DGKRNCYNLIVKQGKTYMIRATALYGNYDGLNISPKFDLYIGANFWTTLDAG--EYLSGV 148

Query: 141 FAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSC 200
             E     R  ++ +C   T    P +  LE+  +D+ +Y  G G      L+T  R   
Sbjct: 149 VEEVNYIPRSNSLDVCLVKTDTSTPFLSLLELRPLDNDSYLTGSGS-----LKTFRRYYL 203

Query: 201 GNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTA 260
            N +    + Y  D    DR W P         + +   +++K  +      P+ +  TA
Sbjct: 204 SNSESV--IAYPED--VKDRIWEPTFD-----SEWKQIWTTLKPNNSNGYLVPKNVLMTA 254

Query: 261 LVSTDSQPDLQYTMDVD-PNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVV 319
            +  +     ++T ++D P     ++LHF+E+  ++     R FDIL +G++A++     
Sbjct: 255 AIPANDSAPFRFTEELDSPTDELYVYLHFSEV-QSLQANESREFDILWSGEVAYEAFIPE 313

Query: 320 KMSGDRYTALVLNTTVAVNGRTLTVTL-HPKGGSHA-IINAIEVFEIIAV-ESKTLPEEV 376
            ++    T +  NT V   G    + L   K  +H  +INAIE + ++   + +T   +V
Sbjct: 314 YLN---ITTIQTNTPVTCPGGKCNLELKRTKNSTHPPLINAIEFYTVVNFPQLETNETDV 370

Query: 377 RALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFL 436
            A++ +K + +L +R  W GDPCVPQ+  W G DC          I  L L + GL G +
Sbjct: 371 VAIKDIKATYEL-NRITWQGDPCVPQKFIWEGLDCNSKDALTLPRITSLNLSSTGLTGNI 429

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
             GI  L HL  ++LS N++ G +P  L ++ SL  ++LS N  NGSIP++L
Sbjct: 430 AAGIQNLTHLDKLDLSNNNLTGGVPEFLASMKSLSFINLSKNNLNGSIPQAL 481

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZQR3|Y2451_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 OS=Arabidopsis thaliana GN=At2g14510 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 209/474 (44%), Gaps = 37/474 (7%)

Query: 28  MRISCG--ARQNIHSPPTNTLWFKDFAY-----TGGIPANATRPSFITPPLKTLRYFPLS 80
           + + CG  ++++   P +N  +  D  +     TG I  N +R +FI  P K LRYFP  
Sbjct: 30  ISLDCGLPSKESYIEPSSNLTFISDVNFIRGGKTGNI-QNNSRTNFIFKPFKVLRYFP-- 86

Query: 81  EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRA 140
           +G  NCY ++      Y +R  F        +  P FD+ +      S+    +D  D  
Sbjct: 87  DGIRNCYSLSVKQGTKYLIRTLFYYGNYDGLNTSPRFDLFLGPNIWTSVDVLIADVGDGV 146

Query: 141 FAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSC 200
             E +   R   + IC   TG   P I ++E+  +    Y    G      L++      
Sbjct: 147 VEEIVHVTRSNILDICLVKTGTSTPMISAIELRPLRYDTYTARTGS-----LKSMAHFYF 201

Query: 201 GNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTA 260
            N      + Y  D +  DR W P   + Q    + +T  ++   S   N  P+ + QTA
Sbjct: 202 TNSDEA--IRYPEDVY--DRVWMP---YSQPEWTQINTTRNVSGFSDGYN-PPQGVIQTA 253

Query: 261 LVSTDSQPDLQYTMDVDPNRNYS-IWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVV 319
            + T+    L +T +++ + + +  +L FAEI         R F IL NG      VD +
Sbjct: 254 SIPTNGSEPLTFTWNLESSDDETYAYLFFAEIQQLKVN-ETREFKILANG------VDYI 306

Query: 320 KMSGDRYTALVLN--TTVAVNGRTLTVTLH--PKGGSHAIINAIEVFEIIAV-ESKTLPE 374
             +  ++ A  L+    +   G    V L   PK     ++NAIE+F +I   +S T  +
Sbjct: 307 DYTPWKFEARTLSNPAPLKCEGGVCRVQLSKTPKSTLPPLMNAIEIFSVIQFPQSDTNTD 366

Query: 375 EVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG 434
           EV A++ ++++  L  R  W GDPCVP+Q  W G  C     S    I  L L   GL G
Sbjct: 367 EVIAIKKIQSTYQL-SRISWQGDPCVPKQFSWMGVSCNVIDISTPPRIISLDLSLSGLTG 425

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
            +   I  L  L+ ++LS N++ G +P  L TI  L V+ L  N   GS+P++L
Sbjct: 426 VISPSIQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQAL 479

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN94|RLK7_ARATH Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 146/512 (28%), Positives = 226/512 (44%), Gaps = 77/512 (15%)

Query: 28  MRISCGARQNIHSPPTNT----LWFKDFAY-----TGGIPANATRPSFITPPLKTLRYFP 78
           + + CG   N  SP T T    L+  D  +     TG + AN  + S    P +TLRYFP
Sbjct: 29  ISLDCGLPANETSPYTETQTGLLFSSDATFIQSGKTGRVQAN--QESKFLKPYRTLRYFP 86

Query: 79  LSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD 138
             EG  NCY ++   +  Y +   F        +  P+FD+ + G  +++ K    D + 
Sbjct: 87  --EGVRNCYNLSVFKERKYLIAASFLYGNYDGHNIAPVFDLYL-GPNLWA-KIDLQDVNG 142

Query: 139 RAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRL 198
               E L      ++ IC   TG   P I SLE+  +   +Y    G      L+T  RL
Sbjct: 143 TG-EEILHIPTSNSLQICLVQTGETTPLISSLELRPMRTGSYTTVSGS-----LKTYRRL 196

Query: 199 SCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQ 258
                  +  + YS D +  DR W P   F     Q  +    I      P   PE   +
Sbjct: 197 YFKKSGSR--LRYSKDVY--DRSWFP--RFMDEWTQISTALGVINTNIYQP---PEDALK 247

Query: 259 TALVSTDSQPDLQYTMDVDP-NRNYSIWLHFAEIDNTITGVGQRVFDILING-DIAFQGV 316
            A   TD+   L +  + +  +  Y  + H+AEI + +     R F+IL+NG +++  G 
Sbjct: 248 NAATPTDASAPLTFKWNSEKLDVQYYFYAHYAEIQD-LQANDTREFNILLNGQNLSVTGP 306

Query: 317 DVV-KMSGDRYTALVLNTTVAVNG--------RTLTVTLHPKGGSHAIINAIEVFEIIAV 367
           +V  K+S   + +   ++ ++ NG        RT   TL P      ++NA+EV+ +I  
Sbjct: 307 EVPDKLSIKTFQS---SSPISCNGWACNFQLIRTKRSTLPP------LLNALEVYTVIQF 357

Query: 368 -ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLG 426
             S+T   +V A++ +  S  L  R  W GDPC PQQ  W   DC               
Sbjct: 358 PRSETDESDVVAMKNISASYGL-SRINWQGDPCFPQQLRWDALDCT-------------- 402

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
                        IS+   + S+NLS + + G I +++ +I  LE LDLSYN   G +PE
Sbjct: 403 ----------NRNISQPPRITSLNLSSSRLNGTIAAAIQSITQLETLDLSYNNLTGEVPE 452

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
            LG++ +L  +NL+GN L+G +P AL  + L 
Sbjct: 453 FLGKMKSLSVINLSGNNLNGSIPQALRKKRLK 484

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG3|Y5182_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 226/527 (42%), Gaps = 70/527 (13%)

Query: 2   LRFHFLWLLVFCSALNSSSARHAPFAMRISCGAR--QNIHSPPTNTLWFK---DFAYTG- 55
           +  HF+++  +    +   A++    + + CG    ++ +  P   L +    D   +G 
Sbjct: 1   MERHFVFIATYLLIFHLVQAQNQTGFISVDCGLSLLESPYDAPQTGLTYTSDADLVASGK 60

Query: 56  -GIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHE 114
            G  A    P  +  P  TLRYFP  EG  NCY +N     +Y ++  F        +  
Sbjct: 61  TGRLAKEFEP-LVDKPTLTLRYFP--EGVRNCYNLNVTSDTNYLIKATFVYGNYDGLNVG 117

Query: 115 PLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQ 174
           P F++ + G  +++  S      +    E ++  R  ++ +C   TG   P I  LE+  
Sbjct: 118 PNFNLYL-GPNLWTTVSS-----NDTIEEIILVTRSNSLQVCLVKTGISIPFINMLELRP 171

Query: 175 VDDKAYYFGQG----WGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQ 230
           +    Y    G       G I  ++TR+       +F  D        DR W P+     
Sbjct: 172 MKKNMYVTQSGSLKYLFRGYISNSSTRI-------RFPDDVY------DRKWYPLFD--- 215

Query: 231 NADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDP-NRNYSIWLHFA 289
             D      +++K  +      P+++   A     +   L  T  V+P    +  ++H A
Sbjct: 216 --DSWTQVTTNLKVNTSITYELPQSVMAKAATPIKANDTLNITWTVEPPTTQFYSYVHIA 273

Query: 290 EIDNTITGVGQRVFDILINGDIAF--------QGVDVVKMS-----GDRYTALVLNTTVA 336
           EI   +     R F++ +NG+  F        +   +V +S     G R    V+     
Sbjct: 274 EIQ-ALRANETREFNVTLNGEYTFGPFSPIPLKTASIVDLSPGQCDGGRCILQVV----- 327

Query: 337 VNGRTLTVTLHPKGGSHAIINAIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWN 395
              +TL  TL P      ++NAIE F +I   + +T   +V  ++ ++ +  L  R  W 
Sbjct: 328 ---KTLKSTLPP------LLNAIEAFTVIDFPQMETNENDVAGIKNVQGTYGL-SRISWQ 377

Query: 396 GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS 455
           GDPCVP+Q  W G +C+    S   +I  L L + GL G +   I  L HLQ ++LS N+
Sbjct: 378 GDPCVPKQLLWDGLNCKNSDISTPPIITSLDLSSSGLTGIITQAIKNLTHLQILDLSDNN 437

Query: 456 IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           + G +P  L  I SL V++LS N  +GS+P SL Q   + +LN+ GN
Sbjct: 438 LTGEVPEFLADIKSLLVINLSGNNLSGSVPPSLLQKKGM-KLNVEGN 483

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O81069|Y2899_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1

 Score =  136 bits (342), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 186/419 (44%), Gaps = 25/419 (5%)

Query: 73  TLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSG 132
           TLRYFP  EG  NCY ++      Y + + F        + +P FDI +   +   +   
Sbjct: 77  TLRYFP--EGKRNCYSLDVKRGTTYLIVVSFVYGNYDGLNRDPNFDIHLGPNKWKRIDLD 134

Query: 133 WSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLIL 192
                 R   E +   R  ++ IC   TG   P I ++EI  + +  Y    G    L++
Sbjct: 135 GEKEGTRE--EIIHKARSNSLDICLVKTGETLPIISAIEIRPLRNNTYVTQSG---SLMM 189

Query: 193 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFY 252
                LS  +   ++  D        DR W+P   F  ++    +T+ +I  ++      
Sbjct: 190 SFRVYLSNSDASIRYADDVH------DRIWSP---FNGSSHTHITTDLNINNSNAYE--I 238

Query: 253 PEALYQTALVSTDSQPDLQYTMDVDP-NRNYSIWLHFAEIDNTITGVGQRVFDILINGDI 311
           P+ + QTA +  ++   L  T D  P N    +++HFAEI  T+     R FD+++ G+ 
Sbjct: 239 PKNILQTAAIPRNASAPLIITWDPLPINAEVYLYMHFAEI-QTLEANETRQFDVILRGNF 297

Query: 312 AFQGVDVVKMSG-DRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVES- 369
              G    K+     YT   +       G  L +   P      +INAIE + +I     
Sbjct: 298 NHSGFSPTKLKVFTLYTEEPMK--CGSEGCYLQLVKTPNSTLPPLINAIEAYSVIEFSQL 355

Query: 370 KTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
           +T   +V A++ +KN+  L ++  W GDPC+PQ   W    C +   S    I  L L  
Sbjct: 356 ETSLSDVDAIKNIKNTYKL-NKITWQGDPCLPQDLSWESIRCTYVDGSTSPTIISLDLSK 414

Query: 430 QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
            GL G +P  +     LQ ++LS NS+ G +P  L  + +L +++LS N  +GS+P++L
Sbjct: 415 SGLNGSIPQILQNFTQLQELDLSNNSLTGPVPIFLANMKTLSLINLSGNNLSGSVPQAL 473

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZB1|Y5188_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1

 Score =  132 bits (332), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 199/427 (46%), Gaps = 35/427 (8%)

Query: 73  TLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSG 132
           T+R FP  EG  NCY  N   K  Y +R  F           P FDI +  ++  S+K  
Sbjct: 81  TVRSFP--EGERNCYNFNLTAKSRYLIRATFTYGNYDGLRQVPKFDIHIGPSKWTSVK-- 136

Query: 133 WSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQG--WGEGL 190
                + A  E +  L    + IC   TG G P I SLE+  +++  Y    G   G   
Sbjct: 137 LDGVGNGAVLEMIHVLTQDRLQICLVKTGKGIPFISSLELRPLNNNTYLTQSGSLIGFAR 196

Query: 191 ILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPN 250
           +  +AT        P F + Y  D    DR W  +  FG      +S  + +   +  P 
Sbjct: 197 VFFSAT--------PTF-IRYDEDIH--DRVW--VRQFGNGL---KSISTDLLVDTSNPY 240

Query: 251 FYPEALYQTALV-STDSQPDL-QYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN 308
             P+A+ +TA V S  SQP +  +T+D   +++Y +++HFAEI  T+     R F+I  N
Sbjct: 241 DVPQAVAKTACVPSNASQPLIFDWTLDNITSQSY-VYMHFAEI-QTLKDNDIREFNITYN 298

Query: 309 GDIAFQGV-DVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSH--AIINAIEVFEII 365
           G    Q V   ++      + L  +  ++    + +++    G S    +IN +E+++++
Sbjct: 299 GG---QNVYSYLRPEKFEISTLFDSKPLSSPDGSFSLSFTKTGNSTLPPLINGLEIYKVL 355

Query: 366 -AVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDG 424
             +E +T  +EV A+  +K + DL  +  W GDPC P+ + W G +C +  +    +I  
Sbjct: 356 DLLELETDQDEVSAMINIKATYDLSKKVSWQGDPCAPKSYQWEGLNCSYPNSDQPRII-S 414

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNGS 483
           L L    L G +   ISKL  L  ++LS N + G IP     +  L++++LS N   N +
Sbjct: 415 LNLAENKLTGTITPEISKLTQLIELDLSKNDLSGEIPEFFADMKLLKLINLSGNLGLNST 474

Query: 484 IPESLGQ 490
           IP+S+ Q
Sbjct: 475 IPDSIQQ 481

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SI06|Y5573_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g04300 OS=Arabidopsis thaliana GN=At2g04300 PE=3 SV=2

 Score =  130 bits (327), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 197/441 (44%), Gaps = 33/441 (7%)

Query: 70  PLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSL 129
           P+  LRYFP  EG  NCY +N     +Y +R  F        + E  FD+ +      ++
Sbjct: 81  PILQLRYFP--EGVRNCYTLNVTLGTNYLIRASFVYGNYDGLNKELEFDLYLGPNLWANV 138

Query: 130 KSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEG 189
            +     +     E +   +   + +C   TG   P I SLE+  + +  Y    G  + 
Sbjct: 139 NTAVYLMNGVTTEEIIHSTKSKVLQVCLIKTGESIPIINSLELRPLINDTYNTQSGSLKY 198

Query: 190 LI---LRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQAS 246
           L      T+ R+          + Y  D    DR W P        D+   TE +     
Sbjct: 199 LFRNYFSTSRRI----------IRYPNDV--NDRHWYPFF------DEDAWTELTTNLNV 240

Query: 247 KAPNFY--PEALYQTALVSTDSQPDLQYTMDVDPNR-NYSIWLHFAEIDNTITGVGQRVF 303
            + N Y  P+ +  +A           +T  + P+   +  ++HFA+I  T+     R F
Sbjct: 241 NSSNGYDPPKFVMASASTPISKNAPFNFTWSLIPSTAKFYSYMHFADIQ-TLQANETREF 299

Query: 304 DILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLH-PKGGSHAIINAIEVF 362
           D+++NG++A +       +    T   +   +   G+ +   L   K     + +A+EVF
Sbjct: 300 DMMLNGNLALERYRPKTFATG--TIYFIKPQICEGGQCIIELLKTSKSTLPPLCSALEVF 357

Query: 363 EIIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWV 421
            +I   E +T  ++V A++ ++N+  +  +  W GDPCVP++  W G +C     S    
Sbjct: 358 TVIDFPELETNQDDVIAIKNIQNTYGV-SKTSWQGDPCVPKRFMWDGLNCNNSYISTPPT 416

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           I  L L +  L G + + I  L HLQ+++LS N++ G +P  L  + SL V++LS N  +
Sbjct: 417 ITFLNLSSSHLTGIIASAIQNLTHLQNLDLSNNNLTGGVPEFLAGLKSLLVINLSGNNLS 476

Query: 482 GSIPESLGQLTALRRLNLNGN 502
           GS+P++L Q   L +LNL GN
Sbjct: 477 GSVPQTLLQKKGL-KLNLEGN 496

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD9|Y1756_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 135/491 (27%), Positives = 219/491 (44%), Gaps = 42/491 (8%)

Query: 28  MRISCG--ARQNIHSPPTNTLWFK---DFAYTG--GIPANATRPSFITPPLKTLRYFPLS 80
           + + CG  A ++ ++ P   L F    DF  +G  G   N     +I P    LRYFP  
Sbjct: 31  ISLDCGLQADESPYTEPLTKLTFTSDADFIKSGKSGKIQNVPGMEYIKP-YTVLRYFP-- 87

Query: 81  EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRA 140
           +G  NCY +  +   +Y +   F      + +  P FD+ + G  I++       + +  
Sbjct: 88  DGVRNCYTLIVIQGTNYLIVAMFTYGNYDNLNTHPKFDLYL-GPNIWT-TVDLQRNVNGT 145

Query: 141 FAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSC 200
            AE +   R  ++ IC   TG   P I +LE+  + +  Y    G      L+T  R+  
Sbjct: 146 RAEIIHIPRSTSLQICLVKTGTTTPLISALELRPLRNNTYIPQSGS-----LKTLFRVHL 200

Query: 201 GNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFY--PEALYQ 258
            + K    V Y  D    DR W+P         + R   +S+   +   N Y  PE +  
Sbjct: 201 TDSKET--VRYPED--VHDRLWSPFF-----MPEWRLLRTSLTVNTSDDNGYDIPEDVVV 251

Query: 259 TALVSTDSQPDLQYTMDVD-PNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVD 317
           TA    +    L  + +++ P+     +LH AEI  ++     R F+I    D+ +  V 
Sbjct: 252 TAATPANVSSPLTISWNLETPDDLVYAYLHVAEI-QSLRENDTREFNISAGQDVNYGPV- 309

Query: 318 VVKMSGDRY-TALVLNTT-VAVNGRTLTVTL--HPKGGSHAIINAIEVFEIIAV-ESKTL 372
               S D +    + NT+ V   G T  + L   PK     ++NAIE F  +   +S+T 
Sbjct: 310 ----SPDEFLVGTLFNTSPVKCEGGTCHLQLIKTPKSTLPPLLNAIEAFITVEFPQSETN 365

Query: 373 PEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGL 432
             +V A++ ++ S  L  R  W GDPCVPQQ  W G  C++   S    I  L L +  L
Sbjct: 366 ANDVLAIKSIETSYGL-SRISWQGDPCVPQQLLWDGLTCEYTNMSTPPRIHSLDLSSSEL 424

Query: 433 RGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQL 491
            G +   I  L  L+ ++ S N++ G +P  L  + SL V++LS N  +GS+P++ L ++
Sbjct: 425 TGIIVPEIQNLTELKKLDFSNNNLTGGVPEFLAKMKSLLVINLSGNNLSGSVPQALLNKV 484

Query: 492 TALRRLNLNGN 502
               +LN+ GN
Sbjct: 485 KNGLKLNIQGN 495

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
449457751	621	PREDICTED: putative leucine-rich repeat	0.988	0.845	0.763	0.0
359483663	624	PREDICTED: putative leucine-rich repeat	0.947	0.806	0.789	0.0
224079175	596	predicted protein [Populus trichocarpa]	0.937	0.835	0.795	0.0
255536757	629	serine-threonine protein kinase, plant-t	0.988	0.834	0.757	0.0
449511662	621	PREDICTED: putative leucine-rich repeat	0.988	0.845	0.76	0.0
449457749	625	PREDICTED: putative leucine-rich repeat	0.945	0.803	0.776	0.0
449511656	625	PREDICTED: putative leucine-rich repeat	0.945	0.803	0.774	0.0
6560758	697	F3M18.23 [Arabidopsis thaliana]	0.988	0.753	0.735	0.0
15217901	626	receptor like protein 4 [Arabidopsis tha	0.988	0.838	0.735	0.0
356549305	625	PREDICTED: putative leucine-rich repeat	0.986	0.838	0.719	0.0

>gi|449457751|ref|XP_004146611.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like isoform 2 [Cucumis sativus]

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/525 (76%), Positives = 455/525 (86%)

Query: 1   MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
           MLRF  L LL+     + SSAR  PFA+RISCGAR ++H+PPTNT WFKDFAYTGGIPAN
Sbjct: 1   MLRFILLCLLIHGFLFSLSSARPLPFALRISCGARNDVHTPPTNTPWFKDFAYTGGIPAN 60

Query: 61  ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
           ATRPSFI+PPLKTLRYFPL  GPENCYIINRVP+GHY+VRIFFGLV   +FD EPLFD+S
Sbjct: 61  ATRPSFISPPLKTLRYFPLYTGPENCYIINRVPRGHYSVRIFFGLVNQNNFDTEPLFDVS 120

Query: 121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
           VEGTQ  SLKSGWS++D++ FAEALVFL DG+ SICFHSTGHGDPAIL++EILQ+D+KAY
Sbjct: 121 VEGTQFCSLKSGWSNNDEQTFAEALVFLTDGSASICFHSTGHGDPAILAIEILQIDEKAY 180

Query: 181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
            FG  WGEG+ILRTATRLSCG+GKPKFD D  G+HWGGDRFW  I +FGQ +D+  S E+
Sbjct: 181 DFGPNWGEGVILRTATRLSCGDGKPKFDADSHGNHWGGDRFWTAIKTFGQQSDRIISVEN 240

Query: 241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
           SIKQAS +PNFYPEALY++ALVSTDSQP+L Y MDVDPNRNYSIWLHFAEID +I  VGQ
Sbjct: 241 SIKQASISPNFYPEALYRSALVSTDSQPELTYVMDVDPNRNYSIWLHFAEIDGSIRNVGQ 300

Query: 301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
           R+FDILINGD+AF  VD++K++G  YTALVLN+TVAVNGRTLT+TL PK GS+AIINAIE
Sbjct: 301 RIFDILINGDVAFPNVDILKLTGGHYTALVLNSTVAVNGRTLTITLQPKEGSYAIINAIE 360

Query: 361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
           VFE+++ E KT P EVRAL+ LK +L LP R GWNGDPCVPQQHPWSGADCQ+D+  +KW
Sbjct: 361 VFEVVSAEVKTSPNEVRALRSLKKALALPVRLGWNGDPCVPQQHPWSGADCQYDKVGNKW 420

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           VIDGLGLDNQGL GFLPN  S+LRHLQSINLSGNSI G IP+SLGTIA LEVLDLSYNFF
Sbjct: 421 VIDGLGLDNQGLTGFLPNETSQLRHLQSINLSGNSIHGPIPASLGTIAKLEVLDLSYNFF 480

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525
           NGSIPESLGQLT+LR LNLNGN+LSGRVPAALG RLLHRASF + 
Sbjct: 481 NGSIPESLGQLTSLRTLNLNGNSLSGRVPAALGARLLHRASFNFT 525

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483663|ref|XP_002279791.2| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Vitis vinifera] gi|297740416|emb|CBI30598.3| unnamed protein product [Vitis vinifera]

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/504 (78%), Positives = 451/504 (89%), Gaps = 1/504 (0%)

Query: 23  HAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEG 82
           HAP+AMRISCGAR+N+H+ PTNTLW+KDFAYTGGIPANAT PSFI+PPLKTLRYFPLSEG
Sbjct: 22  HAPYAMRISCGARENVHTAPTNTLWYKDFAYTGGIPANATTPSFISPPLKTLRYFPLSEG 81

Query: 83  PENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHD-DRAF 141
           PENCYIINRVPKGHY+VR+FFGLV  +SFD EPLFD+SVEGTQIYSL SGWS+ D ++ F
Sbjct: 82  PENCYIINRVPKGHYSVRVFFGLVNESSFDSEPLFDVSVEGTQIYSLSSGWSNSDNEQVF 141

Query: 142 AEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCG 201
           AEALVFL DG+VS+CFHSTGHGDPAILS+EILQVDDKAY FG   G+G+ILRTA R+SCG
Sbjct: 142 AEALVFLTDGSVSLCFHSTGHGDPAILSIEILQVDDKAYNFGPQLGQGIILRTARRVSCG 201

Query: 202 NGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTAL 261
             + KF VDYSG+HWGGDRFWN + +FGQN+D   S E+SIKQASK+PNFYPE LYQ+AL
Sbjct: 202 AKQSKFGVDYSGNHWGGDRFWNSLPTFGQNSDHPLSVETSIKQASKSPNFYPEGLYQSAL 261

Query: 262 VSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKM 321
           VSTD+QPDL+YT+DVDPNRNYSIWLHFAEID ++TGVGQRVFDILING IAF+ VD+VKM
Sbjct: 262 VSTDNQPDLEYTLDVDPNRNYSIWLHFAEIDQSVTGVGQRVFDILINGHIAFKDVDIVKM 321

Query: 322 SGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQV 381
           SGD Y+ALVLNTTVAV+GRTLT+T+HP  G+HAI++AIEVFEI+  ESKTL  EVRALQ 
Sbjct: 322 SGDLYSALVLNTTVAVDGRTLTITMHPTKGNHAIVSAIEVFEILLAESKTLLNEVRALQK 381

Query: 382 LKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGIS 441
           LK+ L LP RFGWNGDPCVPQQHPWSGADC FD +S KWVIDGLGLDNQGLRGFLPN IS
Sbjct: 382 LKSGLGLPLRFGWNGDPCVPQQHPWSGADCLFDSSSRKWVIDGLGLDNQGLRGFLPNDIS 441

Query: 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501
           +LRHLQSINLSGN I G IP SLG+IA LE+LDLSYN FNGSIPESLG LT+LR+L+LNG
Sbjct: 442 QLRHLQSINLSGNRIHGVIPPSLGSIAGLEILDLSYNSFNGSIPESLGLLTSLRKLSLNG 501

Query: 502 NTLSGRVPAALGGRLLHRASFKYV 525
           N+LSGRVP+ALGGRLLHRASF + 
Sbjct: 502 NSLSGRVPSALGGRLLHRASFNFT 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079175|ref|XP_002305781.1| predicted protein [Populus trichocarpa] gi|222848745|gb|EEE86292.1| predicted protein [Populus trichocarpa]

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/498 (79%), Positives = 442/498 (88%)

Query: 28  MRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCY 87
           MRISCGAR N+H+ PTNTLW+KDFAYTGGIPANATRPS+I+PPLKTLRYFPLS GP NCY
Sbjct: 1   MRISCGARLNVHTAPTNTLWYKDFAYTGGIPANATRPSYISPPLKTLRYFPLSSGPNNCY 60

Query: 88  IINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVF 147
            INRVPKGHY VR+FFGL    +FD+EPLFDIS+EGTQIYSLKSGW++HDD+ F EALVF
Sbjct: 61  NINRVPKGHYTVRVFFGLDGHRNFDNEPLFDISIEGTQIYSLKSGWTNHDDQVFTEALVF 120

Query: 148 LRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKF 207
           L DGT SICFHSTGHGDPAILS+EILQ++D+AYYFG  W +G+ILRTA RLSCGNGKPKF
Sbjct: 121 LTDGTASICFHSTGHGDPAILSIEILQMEDRAYYFGPAWVQGIILRTAARLSCGNGKPKF 180

Query: 208 DVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQ 267
           DVDYSGDHWGGDRFW+PI +FGQ +D  RSTES IK+AS APN+YPEALYQTALVSTD+Q
Sbjct: 181 DVDYSGDHWGGDRFWSPIKTFGQGSDLARSTESGIKKASNAPNYYPEALYQTALVSTDTQ 240

Query: 268 PDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYT 327
           PDL YTMDVDPNRNYSIWLHFAEID+++T  G+RVFDILING +AF+ VD+VKMSGDRYT
Sbjct: 241 PDLAYTMDVDPNRNYSIWLHFAEIDSSVTAAGKRVFDILINGVVAFEDVDIVKMSGDRYT 300

Query: 328 ALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLD 387
           ALVLNTTV V+GR LT+ LHPK GSHAIINAIEVFEI+  ESKT  EEVRALQ LK++L 
Sbjct: 301 ALVLNTTVTVSGRILTIGLHPKEGSHAIINAIEVFEILTAESKTSLEEVRALQSLKSALS 360

Query: 388 LPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQ 447
           LP RFGWNGDPCVPQ+HPW+GADC FD+TS KW IDGL LDNQGLRGF PN IS+L HLQ
Sbjct: 361 LPLRFGWNGDPCVPQEHPWNGADCHFDKTSSKWFIDGLSLDNQGLRGFFPNDISRLHHLQ 420

Query: 448 SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGR 507
           +INLS NSIRGA+P S+GTI  L VLDLSYN FNGSIPESLGQLT+LRRLNLNGN+LSGR
Sbjct: 421 NINLSDNSIRGAVPPSIGTIPGLVVLDLSYNSFNGSIPESLGQLTSLRRLNLNGNSLSGR 480

Query: 508 VPAALGGRLLHRASFKYV 525
           VPAALGGRLLH ASF + 
Sbjct: 481 VPAALGGRLLHGASFNFT 498

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536757|ref|XP_002509445.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549344|gb|EEF50832.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/531 (75%), Positives = 456/531 (85%), Gaps = 6/531 (1%)

Query: 1   MLRFHFL--WLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIP 58
           MLRF  +    LVF  A ++  A+  P+ MRISCGAR N+HSPPTNTLW+KDFAYTGGIP
Sbjct: 1   MLRFVIVQSCSLVFFLAFSTCLAKPGPWVMRISCGARVNVHSPPTNTLWYKDFAYTGGIP 60

Query: 59  ANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTL----TSFDHE 114
            NA+  S++ PPL TLRYFPLSEGP NCY I RVPKGHY+VR+F+ LV       + D+E
Sbjct: 61  TNASLTSYVAPPLSTLRYFPLSEGPNNCYNIKRVPKGHYSVRVFYALVAHHDPDPNSDNE 120

Query: 115 PLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQ 174
           PLFDISVEGTQIYSL+SGWS HDDR F EA VFL DGT SICFHSTGHGDPAILS+EILQ
Sbjct: 121 PLFDISVEGTQIYSLQSGWSSHDDRVFTEAQVFLTDGTASICFHSTGHGDPAILSIEILQ 180

Query: 175 VDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQ 234
           VDD++Y+FG  WG+G+ILRTATR SCGNGK KFDVDYSGD WGGDRFW+ + +FGQ +D+
Sbjct: 181 VDDRSYFFGPEWGQGVILRTATRFSCGNGKSKFDVDYSGDRWGGDRFWSRMTTFGQGSDK 240

Query: 235 RRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNT 294
             STE+SIK+AS APNFYPE+LYQTALVSTD+QPDL YTMDVDPN+NYS+WLHFAEID +
Sbjct: 241 AISTENSIKKASNAPNFYPESLYQTALVSTDTQPDLAYTMDVDPNKNYSVWLHFAEIDVS 300

Query: 295 ITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHA 354
           ITGVG+R+FDILINGD+ F+ VD+ KMSG RYTALVLNTTVAVNGRTLT+TL PK G+HA
Sbjct: 301 ITGVGKRIFDILINGDVEFEAVDITKMSGGRYTALVLNTTVAVNGRTLTITLRPKEGNHA 360

Query: 355 IINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFD 414
           I+NAIEVFE+I  ESKTL +EVRALQ LK++L LP RFGWNGDPCVPQQHPW+GADCQFD
Sbjct: 361 IVNAIEVFEVITAESKTLLDEVRALQTLKSALGLPLRFGWNGDPCVPQQHPWTGADCQFD 420

Query: 415 RTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLD 474
           RT  KWVIDGLGLDNQGLRGFLPN +SK  HLQSINLS NSI GAIP S+G+I SLEVLD
Sbjct: 421 RTISKWVIDGLGLDNQGLRGFLPNDMSKFHHLQSINLSTNSIHGAIPLSIGSITSLEVLD 480

Query: 475 LSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525
           LSYNFFNGSIPES+GQLT+LRRLNLNGN+LSGRVPAALGGRLLH ASF + 
Sbjct: 481 LSYNFFNGSIPESIGQLTSLRRLNLNGNSLSGRVPAALGGRLLHGASFNFT 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511662|ref|XP_004164020.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like isoform 2 [Cucumis sativus]

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/525 (76%), Positives = 453/525 (86%)

Query: 1   MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
           MLRF  L LL+     + SS R  PFA+RISCGAR ++H+PPTNT WFKDFAYTGGIPAN
Sbjct: 1   MLRFILLCLLIHGFLFSLSSPRPLPFALRISCGARNDVHTPPTNTPWFKDFAYTGGIPAN 60

Query: 61  ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
           ATRPSFI+PPLKTLRYFPL  GPENCYIINRVP+GHY+VRIFFGLV   +FD EPLFD+S
Sbjct: 61  ATRPSFISPPLKTLRYFPLYTGPENCYIINRVPRGHYSVRIFFGLVNQNNFDTEPLFDVS 120

Query: 121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
           VEGTQ  SLKSGWS++D++ FAEALVFL DG+ SICFHSTGHGDPAI ++EILQ+D+KAY
Sbjct: 121 VEGTQFCSLKSGWSNNDEQTFAEALVFLTDGSASICFHSTGHGDPAIPAIEILQIDEKAY 180

Query: 181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
            FG  WGEG+ILRTATRLSCG+GKPKFD D  G+HWGGDRFW  I +FGQ +D+  S E+
Sbjct: 181 DFGPNWGEGVILRTATRLSCGDGKPKFDADSHGNHWGGDRFWTAIKTFGQQSDRIISVEN 240

Query: 241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
           SIKQAS +PNFYPEALY++ALVSTDSQP+L Y MDVDPNRNYSIWLHFAEID +I  VGQ
Sbjct: 241 SIKQASISPNFYPEALYRSALVSTDSQPELTYVMDVDPNRNYSIWLHFAEIDGSIRNVGQ 300

Query: 301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
           R+FDILINGD+AF  VD++K++G  YTALVLN+TVAVNGRTLT+TL PK GS+AIINAIE
Sbjct: 301 RIFDILINGDVAFPNVDILKLTGGHYTALVLNSTVAVNGRTLTITLQPKEGSYAIINAIE 360

Query: 361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
           VFE+++ E KT P EVRAL+ LK +L LP R GWNGDPCVPQQHPWSGADCQ+D+  +KW
Sbjct: 361 VFEVVSAEVKTSPNEVRALRSLKKALALPVRLGWNGDPCVPQQHPWSGADCQYDKVGNKW 420

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           VIDGLGLDNQGL GFLPN  S+LRHLQSINLSGNSI G IP+SLGTIA LEVLDLSYNFF
Sbjct: 421 VIDGLGLDNQGLTGFLPNETSQLRHLQSINLSGNSIHGPIPASLGTIAKLEVLDLSYNFF 480

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525
           NGSIPESLGQLT+LR LNLNGN+LSGRVPAALG RLLHRASF + 
Sbjct: 481 NGSIPESLGQLTSLRTLNLNGNSLSGRVPAALGARLLHRASFNFT 525

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457749|ref|XP_004146610.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like isoform 1 [Cucumis sativus]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/502 (77%), Positives = 442/502 (88%)

Query: 24  APFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGP 83
            PFA+RISCGAR ++H+PPTNT WFKDFAYTGGIPANATRPSFI+PPLKTLRYFPL  GP
Sbjct: 28  VPFALRISCGARNDVHTPPTNTPWFKDFAYTGGIPANATRPSFISPPLKTLRYFPLYTGP 87

Query: 84  ENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAE 143
           ENCYIINRVP+GHY+VRIFFGLV   +FD EPLFD+SVEGTQ  SLKSGWS++D++ FAE
Sbjct: 88  ENCYIINRVPRGHYSVRIFFGLVNQNNFDTEPLFDVSVEGTQFCSLKSGWSNNDEQTFAE 147

Query: 144 ALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNG 203
           ALVFL DG+ SICFHSTGHGDPAIL++EILQ+D+KAY FG  WGEG+ILRTATRLSCG+G
Sbjct: 148 ALVFLTDGSASICFHSTGHGDPAILAIEILQIDEKAYDFGPNWGEGVILRTATRLSCGDG 207

Query: 204 KPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVS 263
           KPKFD D  G+HWGGDRFW  I +FGQ +D+  S E+SIKQAS +PNFYPEALY++ALVS
Sbjct: 208 KPKFDADSHGNHWGGDRFWTAIKTFGQQSDRIISVENSIKQASISPNFYPEALYRSALVS 267

Query: 264 TDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSG 323
           TDSQP+L Y MDVDPNRNYSIWLHFAEID +I  VGQR+FDILINGD+AF  VD++K++G
Sbjct: 268 TDSQPELTYVMDVDPNRNYSIWLHFAEIDGSIRNVGQRIFDILINGDVAFPNVDILKLTG 327

Query: 324 DRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLK 383
             YTALVLN+TVAVNGRTLT+TL PK GS+AIINAIEVFE+++ E KT P EVRAL+ LK
Sbjct: 328 GHYTALVLNSTVAVNGRTLTITLQPKEGSYAIINAIEVFEVVSAEVKTSPNEVRALRSLK 387

Query: 384 NSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKL 443
            +L LP R GWNGDPCVPQQHPWSGADCQ+D+  +KWVIDGLGLDNQGL GFLPN  S+L
Sbjct: 388 KALALPVRLGWNGDPCVPQQHPWSGADCQYDKVGNKWVIDGLGLDNQGLTGFLPNETSQL 447

Query: 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503
           RHLQSINLSGNSI G IP+SLGTIA LEVLDLSYNFFNGSIPESLGQLT+LR LNLNGN+
Sbjct: 448 RHLQSINLSGNSIHGPIPASLGTIAKLEVLDLSYNFFNGSIPESLGQLTSLRTLNLNGNS 507

Query: 504 LSGRVPAALGGRLLHRASFKYV 525
           LSGRVPAALG RLLHRASF + 
Sbjct: 508 LSGRVPAALGARLLHRASFNFT 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511656|ref|XP_004164019.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like isoform 1 [Cucumis sativus]

 Score =  825 bits (2131), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/502 (77%), Positives = 441/502 (87%)

Query: 24  APFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGP 83
            PFA+RISCGAR ++H+PPTNT WFKDFAYTGGIPANATRPSFI+PPLKTLRYFPL  GP
Sbjct: 28  VPFALRISCGARNDVHTPPTNTPWFKDFAYTGGIPANATRPSFISPPLKTLRYFPLYTGP 87

Query: 84  ENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAE 143
           ENCYIINRVP+GHY+VRIFFGLV   +FD EPLFD+SVEGTQ  SLKSGWS++D++ FAE
Sbjct: 88  ENCYIINRVPRGHYSVRIFFGLVNQNNFDTEPLFDVSVEGTQFCSLKSGWSNNDEQTFAE 147

Query: 144 ALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNG 203
           ALVFL DG+ SICFHSTGHGDPAI ++EILQ+D+KAY FG  WGEG+ILRTATRLSCG+G
Sbjct: 148 ALVFLTDGSASICFHSTGHGDPAIPAIEILQIDEKAYDFGPNWGEGVILRTATRLSCGDG 207

Query: 204 KPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVS 263
           KPKFD D  G+HWGGDRFW  I +FGQ +D+  S E+SIKQAS +PNFYPEALY++ALVS
Sbjct: 208 KPKFDADSHGNHWGGDRFWTAIKTFGQQSDRIISVENSIKQASISPNFYPEALYRSALVS 267

Query: 264 TDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSG 323
           TDSQP+L Y MDVDPNRNYSIWLHFAEID +I  VGQR+FDILINGD+AF  VD++K++G
Sbjct: 268 TDSQPELTYVMDVDPNRNYSIWLHFAEIDGSIRNVGQRIFDILINGDVAFPNVDILKLTG 327

Query: 324 DRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLK 383
             YTALVLN+TVAVNGRTLT+TL PK GS+AIINAIEVFE+++ E KT P EVRAL+ LK
Sbjct: 328 GHYTALVLNSTVAVNGRTLTITLQPKEGSYAIINAIEVFEVVSAEVKTSPNEVRALRSLK 387

Query: 384 NSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKL 443
            +L LP R GWNGDPCVPQQHPWSGADCQ+D+  +KWVIDGLGLDNQGL GFLPN  S+L
Sbjct: 388 KALALPVRLGWNGDPCVPQQHPWSGADCQYDKVGNKWVIDGLGLDNQGLTGFLPNETSQL 447

Query: 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503
           RHLQSINLSGNSI G IP+SLGTIA LEVLDLSYNFFNGSIPESLGQLT+LR LNLNGN+
Sbjct: 448 RHLQSINLSGNSIHGPIPASLGTIAKLEVLDLSYNFFNGSIPESLGQLTSLRTLNLNGNS 507

Query: 504 LSGRVPAALGGRLLHRASFKYV 525
           LSGRVPAALG RLLHRASF + 
Sbjct: 508 LSGRVPAALGARLLHRASFNFT 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6560758|gb|AAF16758.1|AC010155_11 F3M18.23 [Arabidopsis thaliana]

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/525 (73%), Positives = 446/525 (84%)

Query: 1   MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
           MLRF    LL+   +L SS AR AP+A+RISCGAR+N+ +PPT  LWFKD AYTGG+PAN
Sbjct: 2   MLRFILASLLLSSFSLYSSLARPAPYALRISCGARKNVRTPPTYALWFKDIAYTGGVPAN 61

Query: 61  ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
           AT P++ITPPLKTLRYFP+SEGP NCY I RVPKGHY+VRIFFGLV   SFD EPLFDIS
Sbjct: 62  ATTPTYITPPLKTLRYFPISEGPNNCYNIVRVPKGHYSVRIFFGLVDQPSFDKEPLFDIS 121

Query: 121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
           +EGTQI SLKSGWS  DD+ FAEAL+FL  GT +ICFHSTGHGDPAILS+EILQVDDKAY
Sbjct: 122 IEGTQISSLKSGWSSQDDQVFAEALIFLLGGTATICFHSTGHGDPAILSIEILQVDDKAY 181

Query: 181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
            FG+GWG+G+ILRTATRL+CG GK +FD DY GDHWGGDRFWN + SFG++AD  RSTE 
Sbjct: 182 SFGEGWGQGVILRTATRLTCGTGKSRFDEDYRGDHWGGDRFWNRMRSFGKSADSPRSTEE 241

Query: 241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
           +IK+AS +PNFYPE LYQ+ALVSTD QPDL Y++DV+PNRNYS+WLHFAEIDNTIT  G+
Sbjct: 242 TIKKASVSPNFYPEGLYQSALVSTDDQPDLTYSLDVEPNRNYSVWLHFAEIDNTITAEGK 301

Query: 301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
           RVFD++INGD  F+ VD++KMSG RY ALVLN TV V+GRTLTV L PK G HAIINAIE
Sbjct: 302 RVFDVVINGDTFFEDVDIIKMSGGRYAALVLNATVTVSGRTLTVVLQPKAGGHAIINAIE 361

Query: 361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
           VFEII  E KTL +EV ALQ +K +L LP RFGWNGDPCVP QHPWSGA+CQ D+ + +W
Sbjct: 362 VFEIITAEFKTLRDEVSALQKMKKALGLPSRFGWNGDPCVPPQHPWSGANCQLDKNTSRW 421

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
            IDGL LDNQGL+GFLPN ISKL+HLQSINLS N+IRG IP+SLG++ SLEVLDLSYN F
Sbjct: 422 FIDGLDLDNQGLKGFLPNDISKLKHLQSINLSENNIRGGIPASLGSVTSLEVLDLSYNSF 481

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525
           NGSIPE+LG+LT+LR LNLNGN+LSG+VPAA+GGRLLHRASF + 
Sbjct: 482 NGSIPETLGELTSLRILNLNGNSLSGKVPAAVGGRLLHRASFNFT 526

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217901|ref|NP_174156.1| receptor like protein 4 [Arabidopsis thaliana] gi|332192839|gb|AEE30960.1| receptor like protein 4 [Arabidopsis thaliana]

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/525 (73%), Positives = 446/525 (84%)

Query: 1   MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
           MLRF    LL+   +L SS AR AP+A+RISCGAR+N+ +PPT  LWFKD AYTGG+PAN
Sbjct: 2   MLRFILASLLLSSFSLYSSLARPAPYALRISCGARKNVRTPPTYALWFKDIAYTGGVPAN 61

Query: 61  ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
           AT P++ITPPLKTLRYFP+SEGP NCY I RVPKGHY+VRIFFGLV   SFD EPLFDIS
Sbjct: 62  ATTPTYITPPLKTLRYFPISEGPNNCYNIVRVPKGHYSVRIFFGLVDQPSFDKEPLFDIS 121

Query: 121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
           +EGTQI SLKSGWS  DD+ FAEAL+FL  GT +ICFHSTGHGDPAILS+EILQVDDKAY
Sbjct: 122 IEGTQISSLKSGWSSQDDQVFAEALIFLLGGTATICFHSTGHGDPAILSIEILQVDDKAY 181

Query: 181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
            FG+GWG+G+ILRTATRL+CG GK +FD DY GDHWGGDRFWN + SFG++AD  RSTE 
Sbjct: 182 SFGEGWGQGVILRTATRLTCGTGKSRFDEDYRGDHWGGDRFWNRMRSFGKSADSPRSTEE 241

Query: 241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
           +IK+AS +PNFYPE LYQ+ALVSTD QPDL Y++DV+PNRNYS+WLHFAEIDNTIT  G+
Sbjct: 242 TIKKASVSPNFYPEGLYQSALVSTDDQPDLTYSLDVEPNRNYSVWLHFAEIDNTITAEGK 301

Query: 301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
           RVFD++INGD  F+ VD++KMSG RY ALVLN TV V+GRTLTV L PK G HAIINAIE
Sbjct: 302 RVFDVVINGDTFFEDVDIIKMSGGRYAALVLNATVTVSGRTLTVVLQPKAGGHAIINAIE 361

Query: 361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
           VFEII  E KTL +EV ALQ +K +L LP RFGWNGDPCVP QHPWSGA+CQ D+ + +W
Sbjct: 362 VFEIITAEFKTLRDEVSALQKMKKALGLPSRFGWNGDPCVPPQHPWSGANCQLDKNTSRW 421

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
            IDGL LDNQGL+GFLPN ISKL+HLQSINLS N+IRG IP+SLG++ SLEVLDLSYN F
Sbjct: 422 FIDGLDLDNQGLKGFLPNDISKLKHLQSINLSENNIRGGIPASLGSVTSLEVLDLSYNSF 481

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525
           NGSIPE+LG+LT+LR LNLNGN+LSG+VPAA+GGRLLHRASF + 
Sbjct: 482 NGSIPETLGELTSLRILNLNGNSLSGKVPAAVGGRLLHRASFNFT 526

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549305|ref|XP_003543034.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Glycine max]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/524 (71%), Positives = 436/524 (83%)

Query: 2   LRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANA 61
            RF  LW+L  C A  + +A+  PFAMRISCGARQN+ + PT TLW+KDF YTGGIP NA
Sbjct: 7   FRFLLLWMLFLCFACTARAAQRGPFAMRISCGARQNVQTKPTTTLWYKDFGYTGGIPTNA 66

Query: 62  TRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISV 121
              S+I PPLKTLRYFPLSEGP NCY INRVPKGHY++RIFFGLV       EPLFDIS+
Sbjct: 67  KTSSYIAPPLKTLRYFPLSEGPSNCYNINRVPKGHYSIRIFFGLVAQARATDEPLFDISI 126

Query: 122 EGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYY 181
           +GTQIYSLKSGW+  DD+AF EA VFL DG+VSICFH TGHGDPAILS+EILQ+D+KAYY
Sbjct: 127 QGTQIYSLKSGWTTQDDQAFTEAQVFLMDGSVSICFHGTGHGDPAILSIEILQIDNKAYY 186

Query: 182 FGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESS 241
           FG  W +G+ILRT  RLSCG G+ K+ VDY  D  GGDRFW    +FG+++D+ RS E+ 
Sbjct: 187 FGSQWSQGIILRTVKRLSCGFGQSKYGVDYGADPRGGDRFWQHTETFGEDSDRPRSVETR 246

Query: 242 IKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQR 301
           IKQAS  PNFYPE LY++ALVST SQP+L YT+DVDPN+NYS+WLHFAEIDN++T  GQR
Sbjct: 247 IKQASHPPNFYPETLYRSALVSTSSQPELTYTLDVDPNKNYSVWLHFAEIDNSVTAEGQR 306

Query: 302 VFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEV 361
           VFDI+INGD+AF+ VD+VK+SGDRYTALVLNTTV VNGRTLT+ L PK GS AIINAIE+
Sbjct: 307 VFDIMINGDVAFKDVDIVKLSGDRYTALVLNTTVVVNGRTLTIALSPKDGSFAIINAIEI 366

Query: 362 FEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWV 421
            E+I  ESKTL +EV ALQ LK +L LP RFGWNGDPCVPQQHPW+GADC+ D++S KWV
Sbjct: 367 MEVIMAESKTLSDEVMALQKLKKALGLPPRFGWNGDPCVPQQHPWTGADCRLDKSSSKWV 426

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           IDGLGLDNQGL+GFLPN IS+L +LQ +NLSGNSI+G IPS LGTIASL+VLDLSYNFFN
Sbjct: 427 IDGLGLDNQGLKGFLPNDISRLHNLQILNLSGNSIQGPIPSPLGTIASLQVLDLSYNFFN 486

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525
           GSIPESLGQLT+L+RLNLNGN LSGRVPA LGGRLLH ASF + 
Sbjct: 487 GSIPESLGQLTSLQRLNLNGNFLSGRVPATLGGRLLHGASFNFT 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
TAIR|locus:2032221	626	RLP4 "receptor like protein 4"	0.986	0.837	0.736	2.8e-217
TAIR|locus:2031175	628	AT1G25570 [Arabidopsis thalian	0.924	0.781	0.382	7.6e-80
TAIR|locus:2083023	517	AT3G05990 [Arabidopsis thalian	0.516	0.529	0.354	1.5e-35
TAIR|locus:2094103	519	AT3G19230 [Arabidopsis thalian	0.794	0.813	0.274	6e-34
TAIR|locus:2055160	886	AT2G14440 [Arabidopsis thalian	0.870	0.521	0.288	4.8e-33
TAIR|locus:2028446	888	AT1G49100 [Arabidopsis thalian	0.772	0.461	0.272	1.3e-32
TAIR|locus:2017572	882	AT1G51790 [Arabidopsis thalian	0.854	0.514	0.281	2e-30
TAIR|locus:2195850	890	AT1G51860 [Arabidopsis thalian	0.896	0.534	0.254	2e-30
TAIR|locus:2078186	889	AT3G46340 [Arabidopsis thalian	0.602	0.359	0.298	6.2e-30
TAIR|locus:2059804	892	AT2G04300 [Arabidopsis thalian	0.770	0.458	0.270	1.1e-29

TAIR|locus:2032221 RLP4 "receptor like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 2099 (743.9 bits), Expect = 2.8e-217, P = 2.8e-217
 Identities = 386/524 (73%), Positives = 446/524 (85%)

Query:     1 MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
             MLRF    LL+   +L SS AR AP+A+RISCGAR+N+ +PPT  LWFKD AYTGG+PAN
Sbjct:     2 MLRFILASLLLSSFSLYSSLARPAPYALRISCGARKNVRTPPTYALWFKDIAYTGGVPAN 61

Query:    61 ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
             AT P++ITPPLKTLRYFP+SEGP NCY I RVPKGHY+VRIFFGLV   SFD EPLFDIS
Sbjct:    62 ATTPTYITPPLKTLRYFPISEGPNNCYNIVRVPKGHYSVRIFFGLVDQPSFDKEPLFDIS 121

Query:   121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
             +EGTQI SLKSGWS  DD+ FAEAL+FL  GT +ICFHSTGHGDPAILS+EILQVDDKAY
Sbjct:   122 IEGTQISSLKSGWSSQDDQVFAEALIFLLGGTATICFHSTGHGDPAILSIEILQVDDKAY 181

Query:   181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
              FG+GWG+G+ILRTATRL+CG GK +FD DY GDHWGGDRFWN + SFG++AD  RSTE 
Sbjct:   182 SFGEGWGQGVILRTATRLTCGTGKSRFDEDYRGDHWGGDRFWNRMRSFGKSADSPRSTEE 241

Query:   241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
             +IK+AS +PNFYPE LYQ+ALVSTD QPDL Y++DV+PNRNYS+WLHFAEIDNTIT  G+
Sbjct:   242 TIKKASVSPNFYPEGLYQSALVSTDDQPDLTYSLDVEPNRNYSVWLHFAEIDNTITAEGK 301

Query:   301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
             RVFD++INGD  F+ VD++KMSG RY ALVLN TV V+GRTLTV L PK G HAIINAIE
Sbjct:   302 RVFDVVINGDTFFEDVDIIKMSGGRYAALVLNATVTVSGRTLTVVLQPKAGGHAIINAIE 361

Query:   361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
             VFEII  E KTL +EV ALQ +K +L LP RFGWNGDPCVP QHPWSGA+CQ D+ + +W
Sbjct:   362 VFEIITAEFKTLRDEVSALQKMKKALGLPSRFGWNGDPCVPPQHPWSGANCQLDKNTSRW 421

Query:   421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
              IDGL LDNQGL+GFLPN ISKL+HLQSINLS N+IRG IP+SLG++ SLEVLDLSYN F
Sbjct:   422 FIDGLDLDNQGLKGFLPNDISKLKHLQSINLSENNIRGGIPASLGSVTSLEVLDLSYNSF 481

Query:   481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKY 524
             NGSIPE+LG+LT+LR LNLNGN+LSG+VPAA+GGRLLHRASF +
Sbjct:   482 NGSIPETLGELTSLRILNLNGNSLSGKVPAAVGGRLLHRASFNF 525

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2031175 AT1G25570 [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 197/515 (38%), Positives = 284/515 (55%)

Query:     6 FLWLLVFCSALNSSSARHAPF--AMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATR 63
             FL+L  F   L+ S +  +PF  +  I CG+ +   +   N  W  D  Y+GG  A  + 
Sbjct:     8 FLFLSSFFLLLHLSLS--SPFNTSFFIDCGSPET-STDVFNRTWLPDQFYSGGSTAVVSE 64

Query:    64 P-SFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVE 122
             P  F     KT+RYFPLS G +NCY++  +P G Y +R F          H P FD+SVE
Sbjct:    65 PLRFHLIAEKTIRYFPLSFGKKNCYVVP-LPPGRYYLRTFTVYDNYDGKSHSPSFDVSVE 123

Query:   123 GTQIYSLKSGWSDH--DDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
             GT ++S +S W +    D ++++   F+ DG + +CF+S     P + SLE+LQVD  +Y
Sbjct:   124 GTLVFSWRSPWPESLLRDGSYSDLFAFIGDGELDLCFYSIATDPPIVGSLEVLQVDPSSY 183

Query:   181 YFGQGWGEGLILRTATRLSCGNGK--PKFD--VDYSGDHWGGDRFWNPILSFGQNADQRR 236
                 G G+ ++L    RLSCG+ +  P F    D  G  W  D  +    S  ++  +  
Sbjct:   184 D-ADGTGQNVLLVNYGRLSCGSDQWGPGFTNHTDNFGRSWQSDEDFRSEDS--RSVARSL 240

Query:   237 STESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTIT 296
             ST   IK   +APN++P  LYQTA V+      L Y ++VD   +Y +W HF+EID+T+ 
Sbjct:   241 STLEKIKGVDQAPNYFPMKLYQTA-VTVSGGGSLVYELEVDAKLDYLLWFHFSEIDSTVK 299

Query:   297 GVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA-VNGRTLTVTLHPKGGSHAI 355
               GQRVFD+++N D     VDV    G  + A  LN TV  ++   +TV L    G+  I
Sbjct:   300 KAGQRVFDLVVN-DNNVSRVDVFHEVGG-FAAYSLNYTVKNLSSTIVTVKLSSVSGA-PI 356

Query:   356 INAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQ-HPWSGADCQFD 414
             I+ +E + I+  +  T+PE+V A++ LK+SL +P R GWNGDPC P     W G  C+ +
Sbjct:   357 ISGLENYAIVPADMATVPEQVTAMKALKDSLRVPDRMGWNGDPCAPTSWDAWEGVSCRPN 416

Query:   415 RTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLD 474
                   VI  + L +QGL+GF+   IS L +L S+NLS N++ G +P  LG   SL  LD
Sbjct:   417 SQGSALVIFQIDLGSQGLKGFISEQISLLTNLNSLNLSSNTLSGQLPLGLGH-KSLVSLD 475

Query:   475 LSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509
             LS N   G IPESL  L++L+ + LNGN L G+VP
Sbjct:   476 LSNNQLTGPIPESL-TLSSLKLVLLNGNELQGKVP 509

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2083023 AT3G05990 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 106/299 (35%), Positives = 155/299 (51%)

Query:   219 DRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDP 278
             DRFW P  S        R  E      S   N  P  ++ T L +T  QP L++T    P
Sbjct:   218 DRFWEPY-SLNSTVPNNRKLE-----VSGFWNLPPSRIFNTDLRATQVQP-LEFTWPPMP 270

Query:   279 NR--NYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA 336
              +   Y I L+FA  D+   G G RVFD+ +NG   ++ + V   +G    A++  +   
Sbjct:   271 LKMATYYIALYFAH-DSDSMGDGSRVFDVSVNGITYYKELSVTP-AG----AVIFASRWP 324

Query:   337 VNGRTLTVTLHPKGGSHA--IINAIEVFEIIAVESKTLPEEVRALQVLKNSL-DLPHRFG 393
             + G T T+ L P+ GS+   +IN  E+FE++++  KTL  +V AL  +KNS  + P    
Sbjct:   325 LEGLT-TLALSPRSGSNLPPLINGGEMFELLSLGGKTLVRDVTALNAIKNSFKNAPA--D 381

Query:   394 WNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSG 453
             W+GDPC+P+ + WSG  C       +  +  L L N G+ G L   ++KL  L SI L  
Sbjct:   382 WSGDPCLPKNYSWSGISCS---EGPRIRVVALNLTNMGVSGSLAPAVAKLTALSSIWLGN 438

Query:   454 NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
             NS+ G++P    ++  LE L    N F+GSIP SLG +  LR L L  N L+G+VP+ L
Sbjct:   439 NSLSGSLPD-FSSLKRLESLHFEDNLFSGSIPSSLGGVPHLRELFLQNNNLTGQVPSNL 496

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094103 AT3G19230 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 6.0e-34, P = 6.0e-34
 Identities = 125/455 (27%), Positives = 211/455 (46%)

Query:    67 ITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI 126
             + P L TLRYFP     ++CY         Y +R  +        ++ P+FD  + GT+ 
Sbjct:    60 LVPILSTLRYFPDKSSRKHCYNFPVAKTSKYLIRTTYYYGNFDGKNNPPVFDQIIGGTK- 118

Query:   127 YSLKSGWSDH--DDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQ 184
             +S+ +   D+     ++ E +V +    +S+C     H   +   +  L V         
Sbjct:   119 WSVVNTSEDYAKGQSSYYEIIVGVPGNRLSVCLAKNAHTLSSSPFISSLDVQSLEDTMYN 178

Query:   185 GWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQ 244
                 G    +    +   G  +  + Y  D +  +R W P       +DQ+  T +S  +
Sbjct:   179 STDLGSYKLSLIARNSFGGDGEI-ISYPDDKY--NRLWQPF------SDQKHLTVTSRSR 229

Query:   245 ASKAPNFY---PEALYQTALVSTDSQP-DLQYTMDVDPNRNYSIWLHFAEIDNTITG-VG 299
              + + NF+   P   +     ++  +P +LQ+     P   Y + L+F   DN   G + 
Sbjct:   230 INPS-NFWNIPPAEAFVEGFTASKGKPLELQWPPFPLPATKYYVALYFQ--DNRSPGPMS 286

Query:   300 QRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHA--IIN 357
              R FD+ +NG ++F    + K++      +V +    ++G+T  +TL P   +     IN
Sbjct:   287 WRAFDVSVNG-LSF----LRKLNVSTNGVMVYSGQWPLSGQT-QITLTPAKDAPVGPFIN 340

Query:   358 AIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTS 417
             A EVF+I+ +   T  ++  A++ L  S+  P    W+GDPC+P+ + W+G  C  D+ +
Sbjct:   341 AGEVFQILPLGGTTNIKDAIAMEDLLESIMKPP-VDWSGDPCLPRANSWTGLTCSKDKIA 399

Query:   418 HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477
                VI  L L N GL G LP  I+K+  L+ + L  N + G IP  L  +  LE L L  
Sbjct:   400 R--VIS-LNLTNLGLSGSLPPSINKMTALKDLWLGKNKLTGPIPD-LSPMTRLETLHLED 455

Query:   478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
             N F G+IPESL +L +LR L++  N L G +P+ L
Sbjct:   456 NQFTGAIPESLAKLPSLRTLSIKNNKLKGTIPSVL 490

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055160 AT2G14440 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 4.8e-33, P = 4.8e-33
 Identities = 143/496 (28%), Positives = 216/496 (43%)

Query:    32 CGARQNIH---SPPTNTLWFKDFAYT-GGIPANATRPSFITPPLKTLRYFP-LSEGPENC 86
             CG   N      P TN  +  D  +  GG   N    S I    +  +      EG  NC
Sbjct:    34 CGLPSNESPYIEPLTNLTYISDVNFVRGGKTGNIKNNSDIDFTSRPYKVLRYFPEGIRNC 93

Query:    87 YIINRVPKG-HYNVRIFFGLVTLTSFDHEPLFDISVEGTQIY-SLKSGWSDHDDRAFAEA 144
             Y ++ V +G  Y +R  F        +  P FD+ + G  I+ S+     D  D    E 
Sbjct:    94 YSLS-VKQGTKYLIRTLFFYGNYDGLNTSPRFDLFL-GPNIWTSVDVQKVDGGDGVIEEI 151

Query:   145 LVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGK 204
             +   R   + IC   TG   P I ++E+  +    Y    G  + ++    T     +GK
Sbjct:   152 IHVTRCNILDICLVKTGTTTPMISAIELRPLRYDTYTARTGSLKKILHFYFTN----SGK 207

Query:   205 PKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVST 264
                +V Y  D +  DR W P     Q    + +T  ++   S   N  P+ + +TA + T
Sbjct:   208 ---EVRYPEDVY--DRVWIP---HSQPEWTQINTTRNVSGFSDGYN-PPQDVIKTASIPT 258

Query:   265 DSQPDLQYTM--DVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMS 322
             +    L +T   +   +  Y+ +L+FAEI   +     R F IL+NG + +  +D +   
Sbjct:   259 NVSEPLTFTWMSESSDDETYA-YLYFAEIQQ-LKANETRQFKILVNG-VYY--IDYIPRK 313

Query:   323 GDRYTALVLNTTVAVNGRTLTVTLH--PKGGSHAIINAIEVFEIIAV-ESKTLPEEVRAL 379
              +  T L+    +   G    V L   PK      +NAIE+F +I   +S T  +EV A+
Sbjct:   314 FEAET-LITPAALKCGGGVCRVQLSKTPKSTLPPQMNAIEIFSVIQFPQSDTNTDEVIAI 372

Query:   380 QVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNG 439
             + ++++  +  R  W GDPCVP Q  W G  C     S    I  L L + GL G +   
Sbjct:   373 KNIQSTYKVS-RISWQGDPCVPIQFSWMGVSCNVIDISTPPRIISLDLSSSGLTGVITPS 431

Query:   440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
             I  L  L+ ++LS N++ G IP SL  +  L  LDLS N   G +PE L  +  L  ++L
Sbjct:   432 IQNLTMLRELDLSNNNLTGVIPPSLQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHL 491

Query:   500 NGNTLSGRVPAALGGR 515
              GN L G VP AL  R
Sbjct:   492 RGNNLRGSVPQALQDR 507

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2028446 AT1G49100 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 118/433 (27%), Positives = 195/433 (45%)

Query:    73 TLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSG 132
             TLRYFP  +G  NCY +N     +Y +R  F        +  P FD+ +   ++ ++   
Sbjct:    82 TLRYFP--DGERNCYNLNVTQGTNYLIRAAFLYGNYDGLNTVPNFDLFIGPNKVTTVN-- 137

Query:   133 WSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLIL 192
             ++      F E +   R   + IC   TG   P I +LE+  +    Y      G  L+L
Sbjct:   138 FNATGGGVFVEIIHMSRSTPLDICLVKTGTTTPMISTLELRPLRSDTYI--SAIGSSLLL 195

Query:   193 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFY 252
                  L+      ++  D +      DR W P   F     +  +T  ++  ++      
Sbjct:   196 YFRGYLNDSGVVLRYPDDVN------DRRWFP---FSYKEWKIVTTTLNVNTSNGFD--L 244

Query:   253 PEALYQTALVSTDSQPDLQYTMDV-DPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDI 311
             P+    +A    +     ++   + D    + I+LHFAE+  T+     R F++L+NG +
Sbjct:   245 PQGAMASAATRVNDNGTWEFPWSLEDSTTRFHIYLHFAELQ-TLLANETREFNVLLNGKV 303

Query:   312 AFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHP-KGGSHAIINAIEVFEIIAV-ES 369
              +       +S D  +    +T     G  L   +   K     +INAIE+F ++   +S
Sbjct:   304 YYGPYSPKMLSIDTMSPQPDSTLTCKGGSCLLQLVKTTKSTLPPLINAIELFTVVEFPQS 363

Query:   370 KTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
             +T  +EV A++ ++ +  L  R  W GDPCVP+Q  W+G  C    +S    I  L L +
Sbjct:   364 ETNQDEVIAIKKIQLTYGLS-RINWQGDPCVPEQFLWAGLKCSNINSSTPPTITFLNLSS 422

Query:   430 QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLG 489
              GL G +   I  L HLQ ++LS N + G +P  L  I SL +++LS N F+G +P+ L 
Sbjct:   423 SGLTGIISPSIQNLTHLQELDLSNNDLTGDVPEFLADIKSLLIINLSGNNFSGQLPQKLI 482

Query:   490 QLTALRRLNLNGN 502
                 L+ LN+ GN
Sbjct:   483 DKKRLK-LNVEGN 494

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2017572 AT1G51790 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 2.0e-30, P = 2.0e-30
 Identities = 139/493 (28%), Positives = 229/493 (46%)

Query:    11 VFCSAL-NSSSARHAPFAMRISCGAR-QNIHSPPTNT--LWFKDFAYTGGIPANATRPSF 66
             + C AL N + A+     + I CG + +N     T+T   +  D +YT    +    P  
Sbjct:    12 ICCVALLNLAIAQDQSGFISIDCGLQPENSSYTETSTDIKYVSDSSYTDTGTSYFVAPEN 71

Query:    67 ---ITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEG 123
                +   + ++R FP  EG  NCY I       Y +R  F      S +  P FD+ + G
Sbjct:    72 RQNMKQSMWSVRSFP--EGIRNCYTIAVNSSTKYLIRADFMYGNYDSRNEIPGFDLHL-G 128

Query:   124 TQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFG 183
                +      S     +  E + ++   T+ +C  +TG+G P I  LE+ Q+ + +Y   
Sbjct:   129 PNKWDTVELVSPLQTVS-KEIIYYVLTDTIQVCLVNTGNGTPFISVLELRQLPNSSY--- 184

Query:   184 QGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIK 243
                 E L L    RL  G+      V Y  D +  DR W P      N  +  S  S+  
Sbjct:   185 AAQSESLQL--FQRLDFGS-TTNLTVRYPNDVF--DRIWFPATP---NGTKPLSDPSTSL 236

Query:   244 QASKAPNF-YPEALYQTALVSTDSQP--DLQYTMDVDPNRNYSIWLHFAEIDNTITG-VG 299
              ++   NF  P+ + +T +V  + +   D  +  D DP+  +  +L+F E+    +G V 
Sbjct:   237 TSNSTGNFRLPQVVMRTGIVPDNPRGFVDFGWIPD-DPSLEFFFYLYFTELQQPNSGTVE 295

Query:   300 QRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHA--IIN 357
              R F IL+NG  +F G     +S + +  L L T+  +   +   +L     S    +IN
Sbjct:   296 TREFVILLNGK-SF-GEP---LSLNYFRTLALFTSNPLKAESFQFSLRQTQSSSLPPLIN 350

Query:   358 AIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRT 416
             A+E + +  + +S T P ++ A++ +K++  +     W GD CVPQ + W G +C F+ T
Sbjct:   351 AMETYFVNKLPQSSTDPNDLSAMRNIKSAYKVKRN--WEGDVCVPQAYTWEGLNCSFNGT 408

Query:   417 SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDL 475
             +   VI  L L + GL G + + IS+L  LQ ++LS N++ G A+P+ L  +  L VL L
Sbjct:   409 NMPRVI-ALNLSSAGLTGEITSDISRLSQLQILDLSNNNLSGPAVPAFLAQLQFLRVLHL 467

Query:   476 SYNFFNGSIPESL 488
             + N  +G IP SL
Sbjct:   468 ANNQLSGPIPSSL 480

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2195850 AT1G51860 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 2.0e-30, P = 2.0e-30
 Identities = 131/515 (25%), Positives = 239/515 (46%)

Query:     1 MLRFH-FLWLLVFC-SALNSSSARHAPFAMRISCGA--RQNIHSPPTNTLWFK---DFAY 53
             M   H FL LL+   + L S  A++    + + CG   ++  ++  +  + +K   D+  
Sbjct:     1 MKSLHWFLHLLIIAFTVLRSVEAQNQAGFISLDCGLVPKETTYTEKSTNITYKSDVDYID 60

Query:    54 TGGI-PANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFD 112
             +G +   N    +     +  +R FP+  G  NCY +N      Y +R  F        +
Sbjct:    61 SGLVGKINDAYKTQFQQQVWAVRSFPV--GQRNCYNVNLTANNKYLIRGTFVYGNYDGLN 118

Query:   113 HEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEI 172
               P FD+ +   +  S+K       + +  E +  +   ++ +C   TG   P I SLE+
Sbjct:   119 QFPSFDLHIGPNKWSSVKI--LGVTNTSMHEIIHVVPQDSLEVCLVKTGPTTPFISSLEV 176

Query:   173 LQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGD-HWGGDRFWNPILSFGQN 231
               +++++Y    G    L+L    R+   +    F + Y  D H   DR WN   SF  +
Sbjct:   177 RPLNNESYLTQSG---SLML--FARVYFPSSSSSF-IRYDEDIH---DRVWN---SFTDD 224

Query:   232 ADQRRSTESSIKQASKAPNFYPEALYQTALVSTD-SQPDLQY-TMDVDPNRNYSIWLHFA 289
                  ST+  I  ++      P+++ +TA V  + S+P L + T+D +  ++Y +++HFA
Sbjct:   225 ETVWISTDLPIDTSNSYD--MPQSVMKTAAVPKNASEPWLLWWTLDENTAQSY-VYMHFA 281

Query:   290 EIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPK 349
             E+ N +T    R F+I  NG + +     ++      + +     V+ +      T    
Sbjct:   282 EVQN-LTANETREFNITYNGGLRW--FSYLRPPNLSISTIFNPRAVSSSNGIFNFTFAMT 338

Query:   350 GGSHA--IINAIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPW 406
             G S    ++NA+E++ ++ + + +T  +EV A+  +K +  L  +  W GDPC PQ + W
Sbjct:   339 GNSTLPPLLNALEIYTVVDILQLETNKDEVSAMMNIKETYGLSKKISWQGDPCAPQLYRW 398

Query:   407 SGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGT 466
              G +C +  +    +I  L L+   L G + + ISKL  L  ++LS N + G IP+    
Sbjct:   399 EGLNCSYPDSEGSRIIS-LNLNGSELTGSITSDISKLTLLTVLDLSNNDLSGDIPTFFAE 457

Query:   467 IASLEVLDLSYN-FFN-GSIPESLGQLTALRRLNL 499
             + SL++++LS N   N  +IP+SL Q    + L L
Sbjct:   458 MKSLKLINLSGNPNLNLTAIPDSLQQRVNSKSLTL 492

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2078186 AT3G46340 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 103/345 (29%), Positives = 169/345 (48%)

Query:   149 RDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFD 208
             R  ++ +C   T    P +  LE+  +D+ +Y  G G      L+T  R    N +    
Sbjct:   157 RSNSLDVCLVKTDTSTPFLSLLELRPLDNDSYLTGSG-----SLKTFRRYYLSNSESV-- 209

Query:   209 VDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALV-STDSQ 267
             + Y  D    DR W P  +F     Q  +T   +K  +      P+ +  TA + + DS 
Sbjct:   210 IAYPEDV--KDRIWEP--TFDSEWKQIWTT---LKPNNSNGYLVPKNVLMTAAIPANDSA 262

Query:   268 PDLQYTMDVD-PNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRY 326
             P  ++T ++D P     ++LHF+E+ + +     R FDIL +G++A++      ++    
Sbjct:   263 P-FRFTEELDSPTDELYVYLHFSEVQS-LQANESREFDILWSGEVAYEAFIPEYLN---I 317

Query:   327 TALVLNTTVAVNGRTLTVTL-HPKGGSHA-IINAIEVFEIIAV-ESKTLPEEVRALQVLK 383
             T +  NT V   G    + L   K  +H  +INAIE + ++   + +T   +V A++ +K
Sbjct:   318 TTIQTNTPVTCPGGKCNLELKRTKNSTHPPLINAIEFYTVVNFPQLETNETDVVAIKDIK 377

Query:   384 NSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKL 443
              + +L +R  W GDPCVPQ+  W G DC          I  L L + GL G +  GI  L
Sbjct:   378 ATYEL-NRITWQGDPCVPQKFIWEGLDCNSKDALTLPRITSLNLSSTGLTGNIAAGIQNL 436

Query:   444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
              HL  ++LS N++ G +P  L ++ SL  ++LS N  NGSIP++L
Sbjct:   437 THLDKLDLSNNNLTGGVPEFLASMKSLSFINLSKNNLNGSIPQAL 481

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2059804 AT2G04300 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 119/440 (27%), Positives = 202/440 (45%)

Query:    70 PLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYS- 128
             P+  LRYFP  EG  NCY +N     +Y +R  F        + E  FD+ + G  +++ 
Sbjct:    81 PILQLRYFP--EGVRNCYTLNVTLGTNYLIRASFVYGNYDGLNKELEFDLYL-GPNLWAN 137

Query:   129 LKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGE 188
             + +     +     E +   +   + +C   TG   P I SLE+  + +  Y    G   
Sbjct:   138 VNTAVYLMNGVTTEEIIHSTKSKVLQVCLIKTGESIPIINSLELRPLINDTYNTQSG-SL 196

Query:   189 GLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKA 248
               + R     S      +  + Y  D    DR W P   F ++A    +T  ++  +   
Sbjct:   197 KYLFRNYFSTS------RRIIRYPNDV--NDRHWYPF--FDEDAWTELTTNLNVNSS--- 243

Query:   249 PNFYPEALYQTALVST--DSQPDLQYTMDVDPN--RNYSIWLHFAEIDNTITGVGQRVFD 304
              N Y    +  A  ST         +T  + P+  + YS ++HFA+I  T+     R FD
Sbjct:   244 -NGYDPPKFVMASASTPISKNAPFNFTWSLIPSTAKFYS-YMHFADIQ-TLQANETREFD 300

Query:   305 ILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHP-KGGSHAIINAIEVFE 363
             +++NG++A +       +    T   +   +   G+ +   L   K     + +A+EVF 
Sbjct:   301 MMLNGNLALERYRPKTFATG--TIYFIKPQICEGGQCIIELLKTSKSTLPPLCSALEVFT 358

Query:   364 IIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVI 422
             +I   E +T  ++V A++ ++N+  +  +  W GDPCVP++  W G +C     S    I
Sbjct:   359 VIDFPELETNQDDVIAIKNIQNTYGVS-KTSWQGDPCVPKRFMWDGLNCNNSYISTPPTI 417

Query:   423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
               L L +  L G + + I  L HLQ+++LS N++ G +P  L  + SL V++LS N  +G
Sbjct:   418 TFLNLSSSHLTGIIASAIQNLTHLQNLDLSNNNLTGGVPEFLAGLKSLLVINLSGNNLSG 477

Query:   483 SIPESLGQLTALRRLNLNGN 502
             S+P++L Q   L+ LNL GN
Sbjct:   478 SVPQTLLQKKGLK-LNLEGN 496

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00040482 hypothetical protein (596 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	531
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.0
pfam12819	335	pfam12819, Malectin_like, Carbohydrate-binding pro	6e-71
pfam11721	164	pfam11721, Malectin, Di-glucose binding within end	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  972 bits (2514), Expect = 0.0
 Identities = 412/520 (79%), Positives = 453/520 (87%), Gaps = 2/520 (0%)

Query: 7   LWLLVFCS--ALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRP 64
           LWLL   +  A+ +S A   PF MRISCGAR N+ + PTNTLW+KDFAYTGGIPANATRP
Sbjct: 3   LWLLAASALLAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRP 62

Query: 65  SFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGT 124
           SFI PPLKTLRYFPLS+GPENCY INRVPKGHY+VR+FFGLV   +FD EPLFD+SVEGT
Sbjct: 63  SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVEGT 122

Query: 125 QIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQ 184
           QI SLKSGWS HD++ FAEALVFL DG+ SICFHSTGHGDPAILS+EILQVDDKAY FG 
Sbjct: 123 QISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQVDDKAYNFGP 182

Query: 185 GWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQ 244
            WG+G+ILRTA RLSCG GK KFD DYSGDHWGGDRFWN + +FG  +DQ  STE+ IK+
Sbjct: 183 SWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKK 242

Query: 245 ASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFD 304
           AS APNFYPE+LYQ+ALVSTD+QPDL YTMDVDPNRNYS+WLHFAEIDN+IT  G+RVFD
Sbjct: 243 ASNAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFD 302

Query: 305 ILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEI 364
           +LINGD AF+ VD+VKMSG+RYTALVLN TVAV+GRTLT+ L PK G+HAIINAIEVFEI
Sbjct: 303 VLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHAIINAIEVFEI 362

Query: 365 IAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDG 424
           I  ESKTL EEV ALQ LK+SL LP RFGWNGDPCVPQQHPWSGADCQFD T  KW IDG
Sbjct: 363 ITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDG 422

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           LGLDNQGLRGF+PN ISKLRHLQSINLSGNSIRG IP SLG+I SLEVLDLSYN FNGSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKY 524
           PESLGQLT+LR LNLNGN+LSGRVPAALGGRLLHRASF +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522

Length = 623

>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER

 Score =  229 bits (586), Expect = 6e-71
 Identities = 106/351 (30%), Positives = 153/351 (43%), Gaps = 32/351 (9%)

Query: 30  ISCGARQNIH--SPPTNTLWFKDFAYT-GGIPANAT---RPSFITPPLKTLRYFPLSEGP 83
           I CG   N     P T   W  D  +   G   N +     SF++ P KTLR FP  +G 
Sbjct: 1   IDCGLPSNESYTDPSTGITWVSDAGFIDTGKSGNISKENSSSFLSKPYKTLRSFP--DGK 58

Query: 84  ENCYIINRVP--KGHYNVRIFF---GLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD 138
            NCY +   P     Y +R  F       L S    P FD+ +      ++       D 
Sbjct: 59  RNCYTLPVTPGKGTKYLIRATFLYGNYDGLNSVSSPPSFDLYLGVNLWTTVNLSNDSGDS 118

Query: 139 RAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRL 198
                 +   +  T+S+C  +TG G P I +LE+  + D  Y      G    L+   RL
Sbjct: 119 VVKEYIIHVTKSDTLSVCLVNTGTGTPFISALELRPLPDSLYPSS---GGSQALKLVARL 175

Query: 199 SCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSI-KQASKAPNFYPEALY 257
           + G  +    + Y  D    DR W P   F      + ST  S+   ++ AP   P A+ 
Sbjct: 176 NFGGSEG--TIRYPDDV--YDRIWEP--FFSSPGWSQISTSLSVDISSNNAPYIPPSAVL 229

Query: 258 QTALVSTDSQPDLQYTMD-VDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGV 316
           QTA+  T++   L +T D VDPN  Y ++LHFAEI +       R FDI ING   +  V
Sbjct: 230 QTAVTPTNASAPLNFTWDLVDPNFEYYVYLHFAEIQSL----ETREFDIYINGKTVYGDV 285

Query: 317 DVVKMSGDRYTALVLNTTVAVNGRT-LTVTLHPKGGS--HAIINAIEVFEI 364
               +  D   AL L+  V V+G   L ++L P  GS    ++NA+E+F++
Sbjct: 286 SPKYLGTD-TGALYLDFPVNVSGGGLLNISLVPTSGSTLPPLLNALEIFKV 335

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. Length = 335

>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 19/166 (11%)

Query: 197 RLSCGNGKP--KFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPE 254
            ++CG  +      + Y  D +      +  +S    +     T              PE
Sbjct: 4   AINCGGPEHTDSDGITYEADTYFTGGSADYYVSDTNGSSSIAGTT------------DPE 51

Query: 255 ALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQ 314
            LYQT   S  S     Y +    N NY++ LHFAEI     G+G+RVFD+ + G +  +
Sbjct: 52  -LYQTERYSPSS---FSYYIPCLENGNYTVILHFAEIYFGEDGLGRRVFDVYVQGKLVLK 107

Query: 315 GVDVVKMSG-DRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAI 359
             D+V  +G    TA      V V   TL +  +  G    +I   
Sbjct: 108 DFDIVAEAGGKGKTAHKEYIPVTVTDGTLEIHFYWAGKGTLLIPFR 153

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 33/93 (35%), Positives = 48/93 (51%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           ++ L L      G +P  +  L  L  + LS N + G IP  L +   L  LDLS+N  +
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           G IP S  ++  L +L+L+ N LSG +P  LG 
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N    G +P G   + +L++++LS N + G IP+ +G+ +SL+VLDL  N   G I
Sbjct: 123 LNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P SL  LT+L  L L  N L G++P  LG
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.8 bits (176), Expect = 5e-13
 Identities = 38/90 (42%), Positives = 52/90 (57%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  L G +PN I     L+ ++L GN + G IP+SL  + SLE L L+ N   G I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           P  LGQ+ +L+ + L  N LSG +P  +GG
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 35/89 (39%), Positives = 53/89 (59%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +PN ++ L  L+ + L+ N + G IP  LG + SL+ + L YN  +G I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P  +G LT+L  L+L  N L+G +P++LG
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.6 bits (165), Expect = 8e-12
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 17/145 (11%)

Query: 374 EEVRALQVLKNSLDLP--HRFGWN--GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
           EE+  L   K+S++ P  +   WN   D C+     W G  C  + +S    +  + L  
Sbjct: 29  EELELLLSFKSSINDPLKYLSNWNSSADVCL-----WQGITC--NNSSR---VVSIDLSG 78

Query: 430 QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA-SLEVLDLSYNFFNGSIPESL 488
           + + G + + I +L ++Q+INLS N + G IP  + T + SL  L+LS N F GSIP   
Sbjct: 79  KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-- 136

Query: 489 GQLTALRRLNLNGNTLSGRVPAALG 513
           G +  L  L+L+ N LSG +P  +G
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIG 161

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 35/88 (39%), Positives = 50/88 (56%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  L G +P  + +++ L+ I L  N++ G IP  +G + SL  LDL YN   G I
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAAL 512
           P SLG L  L+ L L  N LSG +P ++
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 34/84 (40%), Positives = 46/84 (54%)

Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
           L G +P  I  L+ L S++LS NS+ G IP  +  + +LE+L L  N F G IP +L  L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 492 TALRRLNLNGNTLSGRVPAALGGR 515
             L+ L L  N  SG +P  LG  
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKH 355

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 417 SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLS 476
           S KW+   LG +N  L G +P  I  L  L  ++L  N++ G IPSSLG + +L+ L L 
Sbjct: 213 SLKWIY--LGYNN--LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

Query: 477 YNFFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509
            N  +G IP S+  L  L  L+L+ N+LSG +P
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 6e-10
 Identities = 32/85 (37%), Positives = 51/85 (60%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +P+ +S  + L S++LS N + G IP+S   +  L  LDLS N  +G I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 485 PESLGQLTALRRLNLNGNTLSGRVP 509
           P++LG + +L ++N++ N L G +P
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 6e-10
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L+G + +    +  LQ ++L+ N   G +P S G+   LE LDLS N F+G++
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAV 491

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAAL 512
           P  LG L+ L +L L+ N LSG +P  L
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDEL 519

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 7e-10
 Identities = 35/89 (39%), Positives = 46/89 (51%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +    G +P  ++ L  LQ + L  N   G IP +LG   +L VLDLS N   G I
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           PE L     L +L L  N+L G +P +LG
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 32/88 (36%), Positives = 54/88 (61%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  L G +P  + +L++L+ ++L  N+  G IP +L ++  L+VL L  N F+G I
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAAL 512
           P++LG+   L  L+L+ N L+G +P  L
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           L +    G LP+  +KL  +  +++S N+++G I S    + SL++L L+ N F G +P+
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALG 513
           S G    L  L+L+ N  SG VP  LG
Sbjct: 471 SFGS-KRLENLDLSRNQFSGAVPRKLG 496

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 7e-08
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           +L+S++LS N +      +   + +L+VLDLS N      PE+   L +LR L+L+GN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
             G +P  + K  +L  ++LS N++ G IP  L +  +L  L L  N   G IP+SLG  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 492 TALRRLNLNGNTLSGRVP 509
            +LRR+ L  N+ SG +P
Sbjct: 404 RSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 29/84 (34%), Positives = 43/84 (51%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +P G+    +L  + L  NS+ G IP SLG   SL  + L  N F+G +
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 485 PESLGQLTALRRLNLNGNTLSGRV 508
           P    +L  +  L+++ N L GR+
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP  I  L  L+ ++LS NSI   + SSL  + +L  L+LS N     +PES+G L+ L 
Sbjct: 201 LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258

Query: 496 RLNLNGNTLS 505
            L+L+ N +S
Sbjct: 259 TLDLSNNQIS 268

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)

Query: 436 LPNGISKLR--------HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
             N I+ +         +L+ ++LS N I  ++PS L  + +L+ LDLS+N  +  +P+ 
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKL 181

Query: 488 LGQLTALRRLNLNGNTLS 505
           L  L+ L  L+L+GN +S
Sbjct: 182 LSNLSNLNNLDLSGNKIS 199

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478
           L L N  L          L +L+ ++LSGN++    P +   + SL  LDLS N
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP+ +  L +L++++LS N +   +P  L  +++L  LDLS N  +  +P  +  L+AL 
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE 212

Query: 496 RLNLNGN 502
            L+L+ N
Sbjct: 213 ELDLSNN 219

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 469 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
           +LE LDLS N     +P  L  L  L  L+L+GN ++
Sbjct: 2   NLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 441 SKLRHLQSINLSGNSIRGA-IPS---SLGTIASLEVLDLSYNFFN----GSIPESLGQLT 492
              R L+ +NL+ N I  A I +    L    +LEVLDL+ N        ++ E+L  L 
Sbjct: 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221

Query: 493 ALRRLNLNGNTLSGRVPAAL 512
           +L  LNL  N L+    AAL
Sbjct: 222 SLEVLNLGDNNLTDAGAAAL 241

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	531
PLN03150	623	hypothetical protein; Provisional	100.0
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	100.0
PLN03150	623	hypothetical protein; Provisional	99.85
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.81
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.6
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.46
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.08
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	98.91
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.6
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.39
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.33
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.33
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.29
KOG3593	355	consensus Predicted receptor-like serine/threonine	98.25
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.23
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.12
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.09
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.97
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.91
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.85
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.77
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.67
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.63
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.62
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.53
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.46
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.37
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.09
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.92
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.79
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.3
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.78
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.61
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.56
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.7
PRK15386	426	type III secretion protein GogB; Provisional	92.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.31
PRK15386	426	type III secretion protein GogB; Provisional	92.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.94
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.47
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.35
smart00370	26	LRR Leucine-rich repeats, outliers.	91.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.14
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	88.77
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	87.37
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.77
KOG3593	355	consensus Predicted receptor-like serine/threonine	85.5
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.4
smart00370	26	LRR Leucine-rich repeats, outliers.	84.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	83.5

>PLN03150 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-99  Score=831.46  Aligned_cols=512  Identities=80%  Similarity=1.308  Sum_probs=448.8

Q ss_pred             HhhccccccCCCCcEEEccCCCCCCcCCCCCceeeccCcccCCcccccCCCCCCCCCcceeeccCCCCCCcceEEeeecC
Q 009603           14 SALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVP   93 (531)
Q Consensus        14 ~~~~~~~~~~~~~~i~IdCG~~~~~~~~~~g~~w~~D~~~~~~~~~~~~~~~~~~~~y~t~R~F~~~~g~~~cY~~~~~~   93 (531)
                      +++.++++++++++|+||||++.+.++|.+||+|++|..|++|.......+....++|+|+|+||..+|+++||+||+++
T Consensus        12 ~~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~   91 (623)
T PLN03150         12 LAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNINRVP   91 (623)
T ss_pred             HHhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCcccccccceEeeecC
Confidence            34445566678899999999998754556899999998877655444444444567899999999767889999999999


Q ss_pred             CceeEEEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCCccceEEEEEEEecCCeEEEEEeecCCCCCcEEeEEEE
Q 009603           94 KGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEIL  173 (531)
Q Consensus        94 ~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~~~~~~~E~~~~~~~~~l~v~f~~~~~~~pfIsaiEl~  173 (531)
                      +|+|+|||||+||+||+.++.|.|||++|++.|.+|+.+|+..+..++||++++++++.++|||+|++.++||||+||||
T Consensus        92 ~g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~  171 (623)
T PLN03150         92 KGHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEIL  171 (623)
T ss_pred             CCcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEE
Confidence            99999999999999999889999999999999999999887667789999999999999999999998999999999999


Q ss_pred             EcCCCccccCCCCccceeEEEEeeecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCccccccccceecCCCCCCCCh
Q 009603          174 QVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYP  253 (531)
Q Consensus       174 ~l~~~~y~~~~~~~~~~~l~~~~Rin~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P  253 (531)
                      |+|+++|..+.+...+.+|+++||+||||....+.+||++|+|++||+|.+|..+....+..+++...|.++...++.+|
T Consensus       172 ~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P  251 (623)
T PLN03150        172 QVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYP  251 (623)
T ss_pred             EcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccCh
Confidence            99999997543223467899999999999877777999999999999999987655455666777777776556677899


Q ss_pred             HHHHHHhhccCCCCCCeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeccCCceeeecCCceeeEEEEE
Q 009603          254 EALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT  333 (531)
Q Consensus       254 ~~Vy~TAr~~~~~~~~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~  333 (531)
                      +.||||||++.+...+++|.|++++++.|+|||||||++......++|+|||+|||+.+++++|+...+++.+.++++++
T Consensus       252 ~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~  331 (623)
T PLN03150        252 ESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNK  331 (623)
T ss_pred             HHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEe
Confidence            99999999987655689999999999999999999999754456789999999999999999999887777778899998


Q ss_pred             EeeecCceEEEEEccCCCchhhhhhHhhhhhhhhccCCchHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccccc
Q 009603          334 TVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQF  413 (531)
Q Consensus       334 ~v~~~~~~l~i~~~p~~~~~p~lnalei~~~~~~~~~~~~~~~~aL~~~k~~~~~~~~~~W~~~~C~~~~~~w~gv~C~~  413 (531)
                      .+.++++.++|+|+|..+++|+||||||+++...+..+.+.|+.||+.+|+.+..+...+|+++||.|..++|.||.|..
T Consensus       332 ~v~~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~  411 (623)
T PLN03150        332 TVAVSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQF  411 (623)
T ss_pred             EEeecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeec
Confidence            88887888999999998888999999999999988888999999999999998766445899999998888999999975


Q ss_pred             CCCCcceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCC
Q 009603          414 DRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA  493 (531)
Q Consensus       414 ~~~~~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~  493 (531)
                      +.......++.|+|++|++.|.+|..+++|++|+.|+|++|.+.|.+|..++.|++|+.|+|++|+|+|.+|+.+++|++
T Consensus       412 ~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~  491 (623)
T PLN03150        412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS  491 (623)
T ss_pred             cCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence            44333356999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603          494 LRRLNLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       494 L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+.|+|++|+|+|.+|..++....++..+++.
T Consensus       492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFT  523 (623)
T ss_pred             CCEEECcCCcccccCChHHhhccccCceEEec
Confidence            99999999999999999998876666666655

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=100.00  E-value=2.3e-65  Score=522.92  Aligned_cols=323  Identities=30%  Similarity=0.487  Sum_probs=255.4

Q ss_pred             EccCCCCCC--c-CCCCCceeeccCcccC-CcccccC-----CCCCCCCCcceeeccCCCCCCcceEEeeec--CCceeE
Q 009603           30 ISCGARQNI--H-SPPTNTLWFKDFAYTG-GIPANAT-----RPSFITPPLKTLRYFPLSEGPENCYIINRV--PKGHYN   98 (531)
Q Consensus        30 IdCG~~~~~--~-~~~~g~~w~~D~~~~~-~~~~~~~-----~~~~~~~~y~t~R~F~~~~g~~~cY~~~~~--~~g~yl   98 (531)
                      ||||++.+.  + ++.+||+|++|..|+. |.+..+.     ......++|+|||+||  +|.|+||+||+.  +++|||
T Consensus         1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl   78 (347)
T PF12819_consen    1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL   78 (347)
T ss_pred             CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence            799998763  2 3478999999998874 5544441     1223567899999999  577899999987  456999


Q ss_pred             EEEEEecccCCCCC-----CCCcEEEEEcCeeEEEeecCCCCCccceEEEEEEEec-CCeEEEEEeecCCCC-CcEEeEE
Q 009603           99 VRIFFGLVTLTSFD-----HEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLR-DGTVSICFHSTGHGD-PAILSLE  171 (531)
Q Consensus        99 vRl~F~~~~y~~~~-----~~~~F~v~~~~~~w~~v~~~~~~~~~~~~~E~~~~~~-~~~l~v~f~~~~~~~-pfIsaiE  171 (531)
                      |||||+||+||+.+     +++.|||++|++.|.+|...- ....+++||+++++. ++.|+|||+|++.|. |||||||
T Consensus        79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiE  157 (347)
T PF12819_consen   79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIE  157 (347)
T ss_pred             EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEE
Confidence            99999999999864     256799999999999998532 233679999888887 799999999999887 9999999


Q ss_pred             EEEcCCCccccCCCCccceeEEEEeeecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCcccccccccee-cCCCCCC
Q 009603          172 ILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIK-QASKAPN  250 (531)
Q Consensus       172 l~~l~~~~y~~~~~~~~~~~l~~~~Rin~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~-~~~~~~~  250 (531)
                      |||||+++|+... ...+.+|++++|+||||...  .+||++|++  ||+|.++.  ....|..+++...+. .....++
T Consensus       158 l~~lp~~ly~~~~-~~~s~~L~~~~R~n~G~~~~--~iryp~D~~--dR~W~~~~--~~~~~~~ist~~~i~~~~~~~~~  230 (347)
T PF12819_consen  158 LRPLPDSLYPDTD-ANSSQALETVYRLNVGGSSS--FIRYPDDTY--DRIWQPYS--SSPGWSNISTTSNININSSNNPY  230 (347)
T ss_pred             EEECCccceeccc-cCCCceeEEEEeecCCCccc--ccCCCCCcc--eeeccccc--cCccccccccceeeecccCCccC
Confidence            9999999995221 13578999999999998753  289999998  99999763  135567777766665 3445677


Q ss_pred             CChHHHHHHhhccCCCC--CCeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeccCCceeeecCCceee
Q 009603          251 FYPEALYQTALVSTDSQ--PDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTA  328 (531)
Q Consensus       251 ~~P~~Vy~TAr~~~~~~--~~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~  328 (531)
                      .+|.+|||||+++.+.+  .+++|.+ ++++.+|+||||||||+......++|+|+|||||+.+.+++++.. .+....+
T Consensus       231 ~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~-~~~~~~~  308 (347)
T PF12819_consen  231 DAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPY-LGADTVP  308 (347)
T ss_pred             cChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCccc-ccCcceE
Confidence            89999999999976554  6789988 889999999999999987545566899999999999887554422 2223345


Q ss_pred             EEEEEEeeecC-ceEEEEEccCCCc--hhhhhhHhhhhh
Q 009603          329 LVLNTTVAVNG-RTLTVTLHPKGGS--HAIINAIEVFEI  364 (531)
Q Consensus       329 ~~~~~~v~~~~-~~l~i~~~p~~~~--~p~lnalei~~~  364 (531)
                      ++.++.+.+.+ +.++|+++|+.++  +|+|||+|||++
T Consensus       309 ~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v  347 (347)
T PF12819_consen  309 YYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV  347 (347)
T ss_pred             eecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence            66677776654 4689999997664  899999999975

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PLN03150 hypothetical protein; Provisional

Probab=99.85  E-value=1.6e-19  Score=198.88  Aligned_cols=89  Identities=30%  Similarity=0.564  Sum_probs=82.0

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCC-CCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL-TALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~L~L~  500 (531)
                      |+.|+|++|.+.|.+|..++.|++|+.|+|++|+++|.+|..+++|++|+.|+|++|+|+|.+|..++.+ .++..+++.
T Consensus       444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT  523 (623)
T ss_pred             CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence            7789999999999999999999999999999999999999999999999999999999999999988764 567899999


Q ss_pred             CCCCCCCCCh
Q 009603          501 GNTLSGRVPA  510 (531)
Q Consensus       501 ~N~l~g~iP~  510 (531)
                      +|...+.+|.
T Consensus       524 ~N~~lc~~p~  533 (623)
T PLN03150        524 DNAGLCGIPG  533 (623)
T ss_pred             CCccccCCCC
Confidence            9987665653

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.81  E-value=1.1e-20  Score=174.70  Aligned_cols=141  Identities=27%  Similarity=0.416  Sum_probs=84.2

Q ss_pred             EeeecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCcccccc---cc-ceecCCCCCCCChHHHHHHhhccCCCCCCe
Q 009603          195 ATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRST---ES-SIKQASKAPNFYPEALYQTALVSTDSQPDL  270 (531)
Q Consensus       195 ~~Rin~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t---~~-~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l  270 (531)
                      ++||||||...   .+..      +..|.+|..+....+.....   .. ............+..+|||+|++..   +|
T Consensus         2 ~~~IN~Gg~~~---~~~~------g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~---~f   69 (174)
T PF11721_consen    2 VLRINAGGPAY---TDSS------GIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS---SF   69 (174)
T ss_dssp             EEEEEETSSSE---EETT------TEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS---SE
T ss_pred             EEEEECCCCcc---cCCC------CCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC---ce
Confidence            68999999753   2333      55566665433232210000   00 0000111223346789999999755   39


Q ss_pred             EEEEecCCCCcEEEEEEeeeccCCC----CCCceEEEEEEECCeeeccCCceeeecCCceeeEEEEE-EeeecCceEEEE
Q 009603          271 QYTMDVDPNRNYSIWLHFAEIDNTI----TGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT-TVAVNGRTLTVT  345 (531)
Q Consensus       271 ~~~~~v~~~~~y~v~LhFaei~~~~----~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~-~v~~~~~~l~i~  345 (531)
                      +|.+|+.++|.|.|+|||||++...    ...++|+|||+|||++++++|||.+.+|+...+.++.+ .+.++++.|+|.
T Consensus        70 ~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~  149 (174)
T PF11721_consen   70 SYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQ  149 (174)
T ss_dssp             EEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETT
T ss_pred             EEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEE
Confidence            9999977889999999999997643    34889999999999999999999999987654666665 788889999999


Q ss_pred             Ec
Q 009603          346 LH  347 (531)
Q Consensus       346 ~~  347 (531)
                      |.
T Consensus       150 f~  151 (174)
T PF11721_consen  150 FV  151 (174)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.60  E-value=2.8e-15  Score=138.57  Aligned_cols=134  Identities=28%  Similarity=0.423  Sum_probs=85.8

Q ss_pred             EEEccCCCCCCcCCCCCceeeccCcccCCcccc----------cCC-C----CCCCCCcceeeccCCCCCCcceEEeeec
Q 009603           28 MRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN----------ATR-P----SFITPPLKTLRYFPLSEGPENCYIINRV   92 (531)
Q Consensus        28 i~IdCG~~~~~~~~~~g~~w~~D~~~~~~~~~~----------~~~-~----~~~~~~y~t~R~F~~~~g~~~cY~~~~~   92 (531)
                      ++||||++.-  ++..|..|.+|..|.+|...-          ... .    ...+++|+|.|+-+.    .+.|.||..
T Consensus         3 ~~IN~Gg~~~--~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~~   76 (174)
T PF11721_consen    3 LRINAGGPAY--TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPVV   76 (174)
T ss_dssp             EEEEETSSSE--EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE--
T ss_pred             EEEECCCCcc--cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEecC
Confidence            7899999763  566899999999887654410          000 0    012358999999763    489999988


Q ss_pred             CCceeEEEEEEecccCCC----C-CCCCcEEEEEcCeeEEEeecCCCCC------ccceEEEE-EEEecCCeEEEEEee-
Q 009603           93 PKGHYNVRIFFGLVTLTS----F-DHEPLFDISVEGTQIYSLKSGWSDH------DDRAFAEA-LVFLRDGTVSICFHS-  159 (531)
Q Consensus        93 ~~g~ylvRl~F~~~~y~~----~-~~~~~F~v~~~~~~w~~v~~~~~~~------~~~~~~E~-~~~~~~~~l~v~f~~-  159 (531)
                      ++|.|.|||||.+..+..    . ...+.|||+++|   .+|+.+|+..      ..++.+++ -+.++++.|.|+|.. 
T Consensus        77 ~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g---~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~  153 (174)
T PF11721_consen   77 PNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNG---ETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWA  153 (174)
T ss_dssp             S-EEEEEEEEEE-SSS--------SSSS-EEEEETT---EEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE
T ss_pred             CCcEEEEEEEeccccccccccccCCCceEEEEEecc---eEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEec
Confidence            899999999999875543    1 346789999999   7899888751      23577777 456799999999985 


Q ss_pred             ----------cCCCCCcEEeE
Q 009603          160 ----------TGHGDPAILSL  170 (531)
Q Consensus       160 ----------~~~~~pfIsai  170 (531)
                                ...+.|.||||
T Consensus       154 ~~~~~~i~~~~~~~~p~IsaI  174 (174)
T PF11721_consen  154 GKGTLCIPFIGSYGNPLISAI  174 (174)
T ss_dssp             --SEEEEEEESSSSSSSEEEE
T ss_pred             CCCcEEeeccccCCCcEEeeC
Confidence                      44677899887

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.46  E-value=3.8e-13  Score=157.09  Aligned_cols=145  Identities=32%  Similarity=0.562  Sum_probs=100.0

Q ss_pred             CchHHHHHHHHHHhhcCCCCC--CCCCC-CCCCCCCCCCCccccccCCCCcceEEEEEEccCCCCcccCcccccCCCCCC
Q 009603          371 TLPEEVRALQVLKNSLDLPHR--FGWNG-DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQ  447 (531)
Q Consensus       371 ~~~~~~~aL~~~k~~~~~~~~--~~W~~-~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~  447 (531)
                      ..++|..+|+++|+.+.++..  .+|+. +.|    |.|.|+.|+..     .+++.|+|++|+++|.++..+..+++|+
T Consensus        26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L~   96 (968)
T PLN00113         26 LHAEELELLLSFKSSINDPLKYLSNWNSSADV----CLWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYIQ   96 (968)
T ss_pred             CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCC----CcCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCCC
Confidence            366899999999999865532  47853 344    36999999732     2488888888888888888888888888


Q ss_pred             EEEccCCccCccCCcccc-CCCCCCEEecCCCcCCC----------------------CCcccccCCCCCCEEeccCCCC
Q 009603          448 SINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNG----------------------SIPESLGQLTALRRLNLNGNTL  504 (531)
Q Consensus       448 ~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g----------------------~iP~~l~~l~~L~~L~L~~N~l  504 (531)
                      .|+|++|+++|.+|..+. .+++|++|+|++|+++|                      .+|..++++++|++|+|++|.+
T Consensus        97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113         97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence            888888888888886654 66666666666666555                      4444555555666666666666


Q ss_pred             CCCCChhhhhhccccceeeec
Q 009603          505 SGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       505 ~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      .+.+|..+++ +.+|+.|+++
T Consensus       177 ~~~~p~~~~~-l~~L~~L~L~  196 (968)
T PLN00113        177 VGKIPNSLTN-LTSLEFLTLA  196 (968)
T ss_pred             cccCChhhhh-CcCCCeeecc
Confidence            5556655543 3345555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.08  E-value=1.6e-10  Score=135.11  Aligned_cols=105  Identities=31%  Similarity=0.544  Sum_probs=90.0

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++.+|..+.++++|+.|+|++|.+.|.+|..+..|++|+.|+|++|.++|.+|..+..+++|+.|+|+
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence            47788889998888888888888889999999999988888888888899999999999998888888888889999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|+++|.+|..+.. +..+..|++++
T Consensus       556 ~N~l~~~~p~~l~~-l~~L~~l~ls~  580 (968)
T PLN00113        556 QNQLSGEIPKNLGN-VESLVQVNISH  580 (968)
T ss_pred             CCcccccCChhHhc-CcccCEEeccC
Confidence            99998888888766 45677777764

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=98.91  E-value=5.5e-09  Score=107.41  Aligned_cols=156  Identities=24%  Similarity=0.318  Sum_probs=99.8

Q ss_pred             ecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCccccccccceecCCCCCCCChHHHHHHhhccCCCCCCeEEEEecC
Q 009603          198 LSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVD  277 (531)
Q Consensus       198 in~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l~~~~~v~  277 (531)
                      ||||+.....  .|.|+.-  +|.|.+|..+...+.     +..|....+.....+...|+|||...... .-.|+|++.
T Consensus         1 IdCG~~~~~s--~y~D~~t--g~~~~~D~~~~~~g~-----~~~i~~~~~~~~~~~~~~y~taR~F~~g~-r~cY~l~~~   70 (347)
T PF12819_consen    1 IDCGSSSNSS--SYVDDST--GRTWVSDDDFIDTGK-----SGNISSQPDSSSSDSSPPYQTARIFPEGS-RNCYTLPVT   70 (347)
T ss_pred             CcCCCCCCCc--ccccCCC--CcEEeCCCCcccCCC-----ccccccccCCcCCccccccceEEEcCCCC-ccEEEeecc
Confidence            6999975422  2555443  899998875432211     11221001111124556899999976332 378999986


Q ss_pred             --CCCcEEEEEEeeeccCCCC--C--CceEEEEEEECCeeeccCCceeeecCCceeeEEEEEEeeec-CceEEEEEccCC
Q 009603          278 --PNRNYSIWLHFAEIDNTIT--G--VGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVN-GRTLTVTLHPKG  350 (531)
Q Consensus       278 --~~~~y~v~LhFaei~~~~~--~--~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~~~-~~~l~i~~~p~~  350 (531)
                        .+++|+|||||.-......  +  ...-.|+++++...+.. +++.. .  ...++++++.+.+. ++.|.|.|.|+.
T Consensus        71 ~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~t-V~~~~-~--~~~~~~~E~ii~v~~~~~l~vclv~~~  146 (347)
T PF12819_consen   71 PPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWST-VNLSN-S--PSSPVVKEFIINVTWSDTLSVCLVPTG  146 (347)
T ss_pred             CCCCceEEEEEEeccccccccccccccCCcceEEEECCceeEE-EEecC-C--CcceEEEEEEEEEcCCCcEEEEEEeCC
Confidence              4569999999997653211  0  12356999999876521 22211 1  11468889888888 688999999988


Q ss_pred             Cc-hhhhhhHhhhhhhhh
Q 009603          351 GS-HAIINAIEVFEIIAV  367 (531)
Q Consensus       351 ~~-~p~lnalei~~~~~~  367 (531)
                      .. .|+|||||+..+.+.
T Consensus       147 ~g~~pFIsaiEl~~lp~~  164 (347)
T PF12819_consen  147 SGTFPFISAIELRPLPDS  164 (347)
T ss_pred             CCCCCceeEEEEEECCcc
Confidence            44 499999999988653

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.79  E-value=4.1e-10  Score=100.38  Aligned_cols=88  Identities=32%  Similarity=0.607  Sum_probs=57.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|.|++|.++ .+|+.+..|.+|+.|++++|++. .+|.++..|+.|+.|+++-|++. .+|..|+.++.|++|||..
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence            566667777766 45666677777777777777776 66667777777777777777766 6666777777777766666


Q ss_pred             CCCCC-CCChhh
Q 009603          502 NTLSG-RVPAAL  512 (531)
Q Consensus       502 N~l~g-~iP~~~  512 (531)
                      |+++. .+|..|
T Consensus       112 nnl~e~~lpgnf  123 (264)
T KOG0617|consen  112 NNLNENSLPGNF  123 (264)
T ss_pred             cccccccCCcch
Confidence            66542 344433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.61  E-value=2.6e-08  Score=75.32  Aligned_cols=61  Identities=36%  Similarity=0.572  Sum_probs=45.3

Q ss_pred             CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCC
Q 009603          444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL  504 (531)
Q Consensus       444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l  504 (531)
                      ++|+.|+|++|+++...+..|..+++|+.|++++|++....|..|.++++|++|+|++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3577778888877755456777788888888888888755556777888888888887764

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.60  E-value=3.5e-09  Score=94.48  Aligned_cols=91  Identities=36%  Similarity=0.630  Sum_probs=57.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-------------------
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-------------------  482 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-------------------  482 (531)
                      ++.|++.+|.+. .+|..++.|++|+.|+++-|.+. .+|..|+.++.|++|||.+|+++.                   
T Consensus        58 levln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~  135 (264)
T KOG0617|consen   58 LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG  135 (264)
T ss_pred             hhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc
Confidence            455666666655 45556666666666666666666 566666666666666666665542                   


Q ss_pred             -----CCcccccCCCCCCEEeccCCCCCCCCChhhhhh
Q 009603          483 -----SIPESLGQLTALRRLNLNGNTLSGRVPAALGGR  515 (531)
Q Consensus       483 -----~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~  515 (531)
                           .+|..+++|++|+.|.+..|.+. ++|.+++.+
T Consensus       136 dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~l  172 (264)
T KOG0617|consen  136 DNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL  172 (264)
T ss_pred             CCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHH
Confidence                 45666667777777777777666 677766654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.54  E-value=1.1e-08  Score=106.69  Aligned_cols=103  Identities=23%  Similarity=0.218  Sum_probs=87.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|+.|+++..-...+-+|++|+.|+||.|.+...-++.+..+++|++|+|++|+++.--+..|..|.+|++|+|++
T Consensus       271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~  350 (873)
T KOG4194|consen  271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH  350 (873)
T ss_pred             cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence            77899999999877777888899999999999999888888888999999999999999966667788888889999999


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+++ .|-+..+..+.+|..|||.
T Consensus       351 Nsi~-~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  351 NSID-HLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             cchH-HHHhhHHHHhhhhhhhcCc
Confidence            9888 6777766777788888876

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=1.6e-07  Score=70.88  Aligned_cols=59  Identities=31%  Similarity=0.548  Sum_probs=55.1

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF  480 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  480 (531)
                      ++.|+|++|.++...+..+.++++|+.|+|++|.+....|..|..|++|+.|++++|+|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            78899999999988778999999999999999999977788999999999999999985

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.39  E-value=2.4e-08  Score=104.74  Aligned_cols=101  Identities=28%  Similarity=0.451  Sum_probs=90.7

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCc-cCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      ++++|+|+.|.|+ .+|..+++|++|+.|.+.+|+++. -||+.+++|..|+++.+++|.+. .+|+.+..+.+|+.|.|
T Consensus       269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L  346 (1255)
T KOG0444|consen  269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL  346 (1255)
T ss_pred             hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence            4678889999887 679999999999999999999874 48999999999999999999999 89999999999999999


Q ss_pred             cCCCCCCCCChhhhhhccccceeeec
Q 009603          500 NGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +.|++- .+|+.+ .++..+..||+.
T Consensus       347 ~~NrLi-TLPeaI-HlL~~l~vLDlr  370 (1255)
T KOG0444|consen  347 DHNRLI-TLPEAI-HLLPDLKVLDLR  370 (1255)
T ss_pred             ccccee-echhhh-hhcCCcceeecc
Confidence            999998 899988 677788888886

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.33  E-value=1.5e-07  Score=98.33  Aligned_cols=104  Identities=22%  Similarity=0.273  Sum_probs=95.4

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|.|..|+++..-...|-.|.++++|+|+.|+++..-...+.+|++|+.|+||+|.+....++.+...++|++|+|++
T Consensus       247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~  326 (873)
T KOG4194|consen  247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS  326 (873)
T ss_pred             hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence            67788999999988788899999999999999999977778889999999999999999988899999999999999999


Q ss_pred             CCCCCCCChhhhhhccccceeeecc
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |+++ .+|++-...+..|+.|+|++
T Consensus       327 N~i~-~l~~~sf~~L~~Le~LnLs~  350 (873)
T KOG4194|consen  327 NRIT-RLDEGSFRVLSQLEELNLSH  350 (873)
T ss_pred             cccc-cCChhHHHHHHHhhhhcccc
Confidence            9999 88888778888899999884

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.33  E-value=9.2e-08  Score=100.42  Aligned_cols=102  Identities=29%  Similarity=0.437  Sum_probs=89.4

Q ss_pred             EEEEEEccCCCCcc-cCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCccc-ccCCCCCCEEe
Q 009603          421 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLN  498 (531)
Q Consensus       421 ~l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~  498 (531)
                      +++++.+..|+|.. -+|+.|..|..|+.||||+|++. ++|..+..-+++-+|+||+|+|. .||.. +-+|..|..|+
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhc
Confidence            47788899999864 47889999999999999999999 99999999999999999999999 88864 56899999999


Q ss_pred             ccCCCCCCCCChhhhhhccccceeeecc
Q 009603          499 LNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       499 L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ||+|++. .+|+.+.. +.+|+.|+|+.
T Consensus       157 LS~NrLe-~LPPQ~RR-L~~LqtL~Ls~  182 (1255)
T KOG0444|consen  157 LSNNRLE-MLPPQIRR-LSMLQTLKLSN  182 (1255)
T ss_pred             cccchhh-hcCHHHHH-HhhhhhhhcCC
Confidence            9999999 89998855 56788887764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.29  E-value=7.3e-07  Score=82.14  Aligned_cols=103  Identities=26%  Similarity=0.314  Sum_probs=45.0

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccc-cCCCCCCEEecCCCcCCCCC-cccccCCCCCCEEe
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLN  498 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~  498 (531)
                      .++.|+|++|.|+..  +.+..|+.|+.|+|++|.++ .+.+.+ ..+++|+.|+|++|++...- -..+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   43 KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             T--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            377888888888743  24677888888888888888 454444 35788888888888886311 13566788888888


Q ss_pred             ccCCCCCCCCCh---hhhhhccccceeeeccc
Q 009603          499 LNGNTLSGRVPA---ALGGRLLHRASFKYVWA  527 (531)
Q Consensus       499 L~~N~l~g~iP~---~~~~~~~~l~~l~l~~~  527 (531)
                      |.+|.++ ..+.   .+-..+++++.||..-+
T Consensus       120 L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  120 LEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -TT-GGG-GSTTHHHHHHHH-TT-SEETTEET
T ss_pred             ccCCccc-chhhHHHHHHHHcChhheeCCEEc
Confidence            8888887 3343   23455566777765533

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=98.25  E-value=1e-06  Score=84.24  Aligned_cols=107  Identities=20%  Similarity=0.277  Sum_probs=81.0

Q ss_pred             hHHHHHHhhccCCCCCCeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEEC-CeeeccCCceeeecCCceee--E
Q 009603          253 PEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN-GDIAFQGVDVVKMSGDRYTA--L  329 (531)
Q Consensus       253 P~~Vy~TAr~~~~~~~~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~in-g~~~~~~~di~~~~~~~~~~--~  329 (531)
                      -..+|||+|+....   +.|..|++..|.|-+.|.|||+++  +..+..+|||-+| +..+++++|++...|++..+  .
T Consensus       107 d~ily~ter~neet---Fgyd~pik~dgdyalvlkfaevyF--~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe  181 (355)
T KOG3593|consen  107 DIILYQTERYNEET---FGYDVPIKEDGDYALVLKFAEVYF--KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDE  181 (355)
T ss_pred             hhhhhhhcccchhh---hcccccccCCCceehhhhHHHHHH--HhhhhhheeeeeccceeEEeccchhhhcCCCcccccc
Confidence            44689999996443   778888888899999999999975  5678899999999 99999999999887743222  1


Q ss_pred             EEEEE-----------ee-ecCceEEEEEccCCCchhhhhhHhhhhh
Q 009603          330 VLNTT-----------VA-VNGRTLTVTLHPKGGSHAIINAIEVFEI  364 (531)
Q Consensus       330 ~~~~~-----------v~-~~~~~l~i~~~p~~~~~p~lnalei~~~  364 (531)
                      ++...           +. ...|+++|+|.+..-.+|.+||..|+..
T Consensus       182 ~i~~~i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~g  228 (355)
T KOG3593|consen  182 IIPCLIGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILVG  228 (355)
T ss_pred             eEEEEEcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhhc
Confidence            11111           11 2236789999887766799999988854

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.23  E-value=1.1e-07  Score=95.26  Aligned_cols=97  Identities=30%  Similarity=0.473  Sum_probs=72.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCcccc-CCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|..|.+. .+| +|.+++.|..|+++.|++. .+|.+.. +|.+|.+|||..|++. +.|+++..+.+|+.|||+
T Consensus       208 L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlS  283 (565)
T KOG0472|consen  208 LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLS  283 (565)
T ss_pred             hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhccc
Confidence            344556666655 333 5666666666666666666 5665554 7889999999999998 899999999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|.++ .+|.+++++  |++.|.++
T Consensus       284 NN~is-~Lp~sLgnl--hL~~L~le  305 (565)
T KOG0472|consen  284 NNDIS-SLPYSLGNL--HLKFLALE  305 (565)
T ss_pred             CCccc-cCCcccccc--eeeehhhc
Confidence            99999 788889887  77777665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.22  E-value=2.1e-07  Score=101.91  Aligned_cols=100  Identities=28%  Similarity=0.407  Sum_probs=87.7

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      +|..|+|++|.|.......+.+|..|+.|+||+|.|+ .+|..+.+|+.|++|...+|++. .+| ++.++++|+.+||+
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence            4889999999998776778999999999999999999 89999999999999999999999 888 79999999999999


Q ss_pred             CCCCCC-CCChhhhhhc-cccceeeecc
Q 009603          501 GNTLSG-RVPAALGGRL-LHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g-~iP~~~~~~~-~~l~~l~l~~  526 (531)
                      .|+|+- .+|.   ..+ .+|++|||+.
T Consensus       461 ~N~L~~~~l~~---~~p~p~LkyLdlSG  485 (1081)
T KOG0618|consen  461 CNNLSEVTLPE---ALPSPNLKYLDLSG  485 (1081)
T ss_pred             cchhhhhhhhh---hCCCcccceeeccC
Confidence            999973 3343   333 6788999873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.12  E-value=3e-06  Score=78.08  Aligned_cols=98  Identities=28%  Similarity=0.395  Sum_probs=35.8

Q ss_pred             EEEEEEccCCCCcccCccccc-CCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccc-cCCCCCCEEe
Q 009603          421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLN  498 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~  498 (531)
                      .+++|+|++|.|+-.  ..++ .|.+|+.|+|++|.++ .++ .+..|+.|+.|+|++|+++ .+.+.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            367899999998743  3465 5889999999999999 554 5788999999999999999 565545 4689999999


Q ss_pred             ccCCCCCCCCCh--hhhhhccccceeeec
Q 009603          499 LNGNTLSGRVPA--ALGGRLLHRASFKYV  525 (531)
Q Consensus       499 L~~N~l~g~iP~--~~~~~~~~l~~l~l~  525 (531)
                      |++|++. .+-+  .+ ..+.+|..|++.
T Consensus        95 L~~N~I~-~l~~l~~L-~~l~~L~~L~L~  121 (175)
T PF14580_consen   95 LSNNKIS-DLNELEPL-SSLPKLRVLSLE  121 (175)
T ss_dssp             -TTS----SCCCCGGG-GG-TT--EEE-T
T ss_pred             CcCCcCC-ChHHhHHH-HcCCCcceeecc
Confidence            9999997 3322  23 235567777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.09  E-value=8.1e-07  Score=89.24  Aligned_cols=86  Identities=40%  Similarity=0.574  Sum_probs=61.5

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccC----------------------ccCC-ccccCCCCCCEEecCCC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR----------------------GAIP-SSLGTIASLEVLDLSYN  478 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~----------------------g~ip-~~l~~l~~L~~L~Ls~N  478 (531)
                      ++-|+|++|-+. .+|.+++.+..|+.|+|+.|.|.                      |.++ ..+++|.+|..|||.+|
T Consensus       437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN  515 (565)
T KOG0472|consen  437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN  515 (565)
T ss_pred             ceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC
Confidence            566777766655 56777777777777777777664                      1223 23677788888888888


Q ss_pred             cCCCCCcccccCCCCCCEEeccCCCCCCCCChh
Q 009603          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAA  511 (531)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~  511 (531)
                      .+. .+|..+++|++|++|.|++|.|.  .|..
T Consensus       516 dlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  516 DLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             chh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            887 78888888888888888888887  5543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.97  E-value=1.3e-06  Score=87.60  Aligned_cols=106  Identities=26%  Similarity=0.346  Sum_probs=83.2

Q ss_pred             cccccCCCC-----cceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCC-CcCCC
Q 009603          409 ADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY-NFFNG  482 (531)
Q Consensus       409 v~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g  482 (531)
                      |.|+..+..     .+...++|.|..|+|+-..+..|..+.+|+.||||+|+|+..-|+.|..|.+|..|-+-+ |+|+ 
T Consensus        51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-  129 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-  129 (498)
T ss_pred             EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence            678754432     123578999999999988888999999999999999999988899999999988876554 9998 


Q ss_pred             CCc-ccccCCCCCCEEeccCCCCCCCCChhhhhhc
Q 009603          483 SIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRL  516 (531)
Q Consensus       483 ~iP-~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~  516 (531)
                      .+| ..|++|.+|+.|.+.-|++. .++......+
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL  163 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDL  163 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHh
Confidence            555 57888888888888888887 4544433333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.93  E-value=7.9e-05  Score=83.80  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             hccCCchHHHHHHHHHHhhcCCCCC-----CCCCC--CCCCC
Q 009603          367 VESKTLPEEVRALQVLKNSLDLPHR-----FGWNG--DPCVP  401 (531)
Q Consensus       367 ~~~~~~~~~~~aL~~~k~~~~~~~~-----~~W~~--~~C~~  401 (531)
                      ...++.++++..+.++.+.+..|..     ++|++  +.|.-
T Consensus        56 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~   97 (754)
T PRK15370         56 PPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCIL   97 (754)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCccccc
Confidence            4567788999999999998877652     35864  57743

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=1.4e-06  Score=75.45  Aligned_cols=89  Identities=24%  Similarity=0.421  Sum_probs=77.0

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      +++.++|++|.+....+.--.+.+.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|+-+..|.+|..|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            5888999999998665555555678999999999999 89999999999999999999999 788888889999999999


Q ss_pred             CCCCCCCCChhh
Q 009603          501 GNTLSGRVPAAL  512 (531)
Q Consensus       501 ~N~l~g~iP~~~  512 (531)
                      +|.+. +||-.+
T Consensus       132 ~na~~-eid~dl  142 (177)
T KOG4579|consen  132 ENARA-EIDVDL  142 (177)
T ss_pred             CCccc-cCcHHH
Confidence            99987 787653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=9.5e-06  Score=56.75  Aligned_cols=36  Identities=44%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             CCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCC
Q 009603          469 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS  505 (531)
Q Consensus       469 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~  505 (531)
                      +|++|+|++|+|+ .+|..+++|++|+.|+|++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666665 45555566666666666666655

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.91  E-value=9.5e-06  Score=90.83  Aligned_cols=85  Identities=31%  Similarity=0.386  Sum_probs=68.1

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .|+.|+|++|.|++ +|..   .++|+.|+|++|.|+ .+|..   +.+|+.|+|++|+|+ .+|..+.++++|+.|+|+
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            36778888888875 4432   357888899999988 46754   346788999999998 899999999999999999


Q ss_pred             CCCCCCCCChhhhh
Q 009603          501 GNTLSGRVPAALGG  514 (531)
Q Consensus       501 ~N~l~g~iP~~~~~  514 (531)
                      +|+|+|.+|..+..
T Consensus       454 ~N~Ls~~~~~~L~~  467 (788)
T PRK15387        454 GNPLSERTLQALRE  467 (788)
T ss_pred             CCCCCchHHHHHHH
Confidence            99999998887633

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.85  E-value=6.1e-06  Score=83.62  Aligned_cols=106  Identities=27%  Similarity=0.372  Sum_probs=71.9

Q ss_pred             EEEEEEccCCCCcc----cCcccccCC-CCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCC----Cccc
Q 009603          421 VIDGLGLDNQGLRG----FLPNGISKL-RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPES  487 (531)
Q Consensus       421 ~l~~L~L~~n~l~g----~~p~~l~~L-~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~  487 (531)
                      .++.|+|++|.+.+    .+...+..+ ++|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++.    ++..
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            37888888888773    333455666 7888888888888743    334566677888888888888752    3344


Q ss_pred             ccCCCCCCEEeccCCCCCCCCChhhhhh---ccccceeeecc
Q 009603          488 LGQLTALRRLNLNGNTLSGRVPAALGGR---LLHRASFKYVW  526 (531)
Q Consensus       488 l~~l~~L~~L~L~~N~l~g~iP~~~~~~---~~~l~~l~l~~  526 (531)
                      +..+++|++|+|++|.+++.-...+...   ..++..|+++.
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~  230 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD  230 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence            5566788888888888874433333322   34577777775

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.85  E-value=1.6e-06  Score=90.66  Aligned_cols=98  Identities=31%  Similarity=0.483  Sum_probs=84.6

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      |..|-+++|+++ .+|..++.+.+|..||.+.|.+. .+|..++.|.+|+.|.+..|++. .+|+++..| .|..||++.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence            667888888886 67888888899999999999998 88999999999999999999999 888888854 589999999


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+++ .||-.|.+ +.+|..|.|.
T Consensus       221 Nkis-~iPv~fr~-m~~Lq~l~Le  242 (722)
T KOG0532|consen  221 NKIS-YLPVDFRK-MRHLQVLQLE  242 (722)
T ss_pred             Ccee-ecchhhhh-hhhheeeeec
Confidence            9999 89998865 5678877776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.85  E-value=6.8e-06  Score=83.28  Aligned_cols=105  Identities=22%  Similarity=0.332  Sum_probs=66.8

Q ss_pred             EEEEEEccCCCCccc----CcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCCCccccc---
Q 009603          421 VIDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESLG---  489 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~---  489 (531)
                      .++.|+|++|++++.    ++..+..++.|+.|+|++|.+++.    ++..+..+++|+.|++++|.+++.....+.   
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~  245 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL  245 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence            477888888888742    344455667888888888887643    334566778888888888888753222222   


Q ss_pred             --CCCCCCEEeccCCCCCC----CCChhhhhhccccceeeecc
Q 009603          490 --QLTALRRLNLNGNTLSG----RVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       490 --~l~~L~~L~L~~N~l~g----~iP~~~~~~~~~l~~l~l~~  526 (531)
                        ..++|+.|++++|.++.    .+...+... .++..++++.
T Consensus       246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~  287 (319)
T cd00116         246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRG  287 (319)
T ss_pred             hccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCC
Confidence              23678888888888762    222222222 4566776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.82  E-value=3.9e-05  Score=91.30  Aligned_cols=101  Identities=24%  Similarity=0.279  Sum_probs=61.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+. .++..+..+++|+.|+|+++..-+.+| .+..+++|+.|+|++|.....+|..++++++|+.|+|++
T Consensus       613 L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        613 LVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             CcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            566677766665 345556666777777776655444555 356666777777766655556666666667777777766


Q ss_pred             CCCCCCCChhhhhhccccceeeecc
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |...+.+|..+  .+.+|..|++..
T Consensus       691 c~~L~~Lp~~i--~l~sL~~L~Lsg  713 (1153)
T PLN03210        691 CENLEILPTGI--NLKSLYRLNLSG  713 (1153)
T ss_pred             CCCcCccCCcC--CCCCCCEEeCCC
Confidence            54444666544  244555555543

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.81  E-value=6.2e-06  Score=90.79  Aligned_cols=91  Identities=33%  Similarity=0.515  Sum_probs=82.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .+..|+|++|.++ ..|..++.+.+|+.|+++.|.+. ..|.+..++.+|++|+|.+|++. .+|.++..+.+|+.|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            4889999999876 67888999999999999999999 88899999999999999999999 999999999999999999


Q ss_pred             CCCCCCCCChhhhhh
Q 009603          501 GNTLSGRVPAALGGR  515 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~  515 (531)
                      .|.|. .+|..+..+
T Consensus       123 ~N~f~-~~Pl~i~~l  136 (1081)
T KOG0618|consen  123 FNHFG-PIPLVIEVL  136 (1081)
T ss_pred             hhccC-CCchhHHhh
Confidence            99998 888766543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.77  E-value=4.1e-05  Score=86.05  Aligned_cols=81  Identities=32%  Similarity=0.486  Sum_probs=44.3

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      |+.|+|++|+|+ .+|..+.  .+|+.|+|++|.+. .+|..+.  ++|+.|+|++|+|+ .+|..+.  .+|+.|+|++
T Consensus       222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~  292 (754)
T PRK15370        222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD  292 (754)
T ss_pred             CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence            444555555544 2333222  24555555555555 4554443  35666777777666 4565443  3677777777


Q ss_pred             CCCCCCCChhh
Q 009603          502 NTLSGRVPAAL  512 (531)
Q Consensus       502 N~l~g~iP~~~  512 (531)
                      |+|+ .+|..+
T Consensus       293 N~Lt-~LP~~l  302 (754)
T PRK15370        293 NSIR-TLPAHL  302 (754)
T ss_pred             Cccc-cCcccc
Confidence            7776 455443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.74  E-value=2.6e-05  Score=54.55  Aligned_cols=37  Identities=35%  Similarity=0.625  Sum_probs=30.1

Q ss_pred             CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCC
Q 009603          444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN  481 (531)
Q Consensus       444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  481 (531)
                      ++|+.|+|++|+++ .+|+.+++|++|+.|+|++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46888999999998 67777889999999999999887

...

>PLN03210 Resistant to P

Probab=97.67  E-value=0.0001  Score=87.85  Aligned_cols=102  Identities=25%  Similarity=0.341  Sum_probs=63.7

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC------------------
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG------------------  482 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g------------------  482 (531)
                      .|+.|+|++|...+.+|..+++|++|+.|+|++|..-+.+|..+ .+++|+.|+|++|....                  
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~  857 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG  857 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence            47889999998888899999999999999999876555777654 45555555555543332                  


Q ss_pred             --CCcccccCCCCCCEEeccC-CCCCCCCChhhhhhccccceeeec
Q 009603          483 --SIPESLGQLTALRRLNLNG-NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       483 --~iP~~l~~l~~L~~L~L~~-N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                        .+|..+..+++|+.|+|++ |++. .+|..+.. +.++..+++.
T Consensus       858 i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~-L~~L~~L~l~  901 (1153)
T PLN03210        858 IEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISK-LKHLETVDFS  901 (1153)
T ss_pred             CccChHHHhcCCCCCEEECCCCCCcC-ccCccccc-ccCCCeeecC
Confidence              3444555555555555554 3333 34444332 2344444444

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.65  E-value=1.1e-05  Score=78.45  Aligned_cols=81  Identities=23%  Similarity=0.340  Sum_probs=56.6

Q ss_pred             eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      +.++.|+|+.|++...  ..+..|++|+.||||+|.++ .+-..-.+|.+++.|.|+.|.+. .+ ..+++|-+|..||+
T Consensus       307 Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  307 PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDL  381 (490)
T ss_pred             cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccc
Confidence            4567778888777632  23667777888888888777 44444456777778888887765 22 34667778889999


Q ss_pred             cCCCCC
Q 009603          500 NGNTLS  505 (531)
Q Consensus       500 ~~N~l~  505 (531)
                      ++|++.
T Consensus       382 ~~N~Ie  387 (490)
T KOG1259|consen  382 SSNQIE  387 (490)
T ss_pred             cccchh
Confidence            999885

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.63  E-value=7.4e-05  Score=83.85  Aligned_cols=72  Identities=25%  Similarity=0.321  Sum_probs=48.5

Q ss_pred             CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceee
Q 009603          444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFK  523 (531)
Q Consensus       444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~  523 (531)
                      .+|+.|+|++|.|+ .+|..   .++|+.|+|++|+|+ .+|...   .+|+.|+|++|+|+ .||..++++ .++..|+
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L-~~L~~Ld  451 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHL-SSETTVN  451 (788)
T ss_pred             cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhc-cCCCeEE
Confidence            35666777777776 35533   246777777777777 466532   45777888888888 788887654 4677777


Q ss_pred             ec
Q 009603          524 YV  525 (531)
Q Consensus       524 l~  525 (531)
                      ++
T Consensus       452 Ls  453 (788)
T PRK15387        452 LE  453 (788)
T ss_pred             CC
Confidence            75

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.62  E-value=5.1e-06  Score=71.94  Aligned_cols=98  Identities=28%  Similarity=0.397  Sum_probs=77.0

Q ss_pred             EEEEEccCCCCcccCc---ccccCCCCCCEEEccCCccCccCCccccC-CCCCCEEecCCCcCCCCCcccccCCCCCCEE
Q 009603          422 IDGLGLDNQGLRGFLP---NGISKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFNGSIPESLGQLTALRRL  497 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p---~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  497 (531)
                      +..++|+++.|- .++   ..+....+|+.++|++|.|. .+|+.|.. .+.++.|+|++|+++ .+|.++..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            345777777764 333   35666778888899999999 66766654 458999999999999 999999999999999


Q ss_pred             eccCCCCCCCCChhhhhhccccceeee
Q 009603          498 NLNGNTLSGRVPAALGGRLLHRASFKY  524 (531)
Q Consensus       498 ~L~~N~l~g~iP~~~~~~~~~l~~l~l  524 (531)
                      ++..|.|. ..|.-+.. +.++-.|+.
T Consensus       106 Nl~~N~l~-~~p~vi~~-L~~l~~Lds  130 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAP-LIKLDMLDS  130 (177)
T ss_pred             ccccCccc-cchHHHHH-HHhHHHhcC
Confidence            99999999 78887776 444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.53  E-value=4.8e-05  Score=79.85  Aligned_cols=86  Identities=36%  Similarity=0.649  Sum_probs=52.7

Q ss_pred             EEEEEccCCCCcccCcccccCCC-CCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLR-HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|++.+|.+. .+++....+. +|+.|++++|.+. .+|..++.++.|+.|+++.|+++ .+|...+.++.|+.|+++
T Consensus       118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence            556666666665 4444555553 6666666666666 55555666666666666666666 555555556666666666


Q ss_pred             CCCCCCCCChh
Q 009603          501 GNTLSGRVPAA  511 (531)
Q Consensus       501 ~N~l~g~iP~~  511 (531)
                      +|+++ .+|..
T Consensus       195 ~N~i~-~l~~~  204 (394)
T COG4886         195 GNKIS-DLPPE  204 (394)
T ss_pred             CCccc-cCchh
Confidence            66666 56654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.50  E-value=1.4e-05  Score=83.74  Aligned_cols=91  Identities=24%  Similarity=0.425  Sum_probs=81.2

Q ss_pred             eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      ..+..|+.+.|.+. .+|+.++.|.+|+.|++..|++. .+|.++..| .|..||+|.|+++ .||..|.+|..|++|-|
T Consensus       166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence            34667899999987 67889999999999999999999 889899855 5999999999999 99999999999999999


Q ss_pred             cCCCCCCCCChhhhhh
Q 009603          500 NGNTLSGRVPAALGGR  515 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~  515 (531)
                      .+|.|. +-|..+...
T Consensus       242 enNPLq-SPPAqIC~k  256 (722)
T KOG0532|consen  242 ENNPLQ-SPPAQICEK  256 (722)
T ss_pred             ccCCCC-CChHHHHhc
Confidence            999999 788877643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.46  E-value=3.7e-05  Score=77.42  Aligned_cols=86  Identities=21%  Similarity=0.242  Sum_probs=74.8

Q ss_pred             eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .+++.|+|++|.+++.-+..|.++.+|+.|.|..|++...--..|..+..|+.|+|.+|+|+-.-|.+|..+.+|..|+|
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            46889999999999888888999999999999999988555667888999999999999999888888999999999999


Q ss_pred             cCCCCC
Q 009603          500 NGNTLS  505 (531)
Q Consensus       500 ~~N~l~  505 (531)
                      -.|.|.
T Consensus       354 ~~Np~~  359 (498)
T KOG4237|consen  354 LSNPFN  359 (498)
T ss_pred             ccCccc
Confidence            888774

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.37  E-value=8.5e-05  Score=84.92  Aligned_cols=105  Identities=28%  Similarity=0.322  Sum_probs=84.0

Q ss_pred             EEEEEEccCCC--CcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEe
Q 009603          421 VIDGLGLDNQG--LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN  498 (531)
Q Consensus       421 ~l~~L~L~~n~--l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~  498 (531)
                      .+++|-+..|.  +.-.....|..|+.|+.|||++|.=-+.+|.+++.|-+|++|+|+...+. .+|..+++|.+|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            47788888886  33333344778999999999998888899999999999999999999999 8999999999999999


Q ss_pred             ccCCCCCCCCChhhhhhccccceeeeccc
Q 009603          499 LNGNTLSGRVPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       499 L~~N~l~g~iP~~~~~~~~~l~~l~l~~~  527 (531)
                      +..+.....+|. +...+.+|+.|.+-+-
T Consensus       625 l~~~~~l~~~~~-i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  625 LEVTGRLESIPG-ILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccccccccccc-hhhhcccccEEEeecc
Confidence            998876655644 4444667787777543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.09  E-value=0.00014  Score=70.81  Aligned_cols=80  Identities=31%  Similarity=0.394  Sum_probs=34.3

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc--ccccCCCCCCEEec
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNL  499 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~L  499 (531)
                      ++.|+|++|.++. +...-.+|-+++.|.|+.|.+. . -..+++|=+|..||+++|++. .+-  ..+++|+.|++|.|
T Consensus       331 L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  331 LQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             ceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhh
Confidence            4445555554431 1122223444444555555443 1 113344444555555555444 111  23444555555555


Q ss_pred             cCCCCC
Q 009603          500 NGNTLS  505 (531)
Q Consensus       500 ~~N~l~  505 (531)
                      -+|.+.
T Consensus       407 ~~NPl~  412 (490)
T KOG1259|consen  407 TGNPLA  412 (490)
T ss_pred             cCCCcc
Confidence            555554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.02  E-value=0.00083  Score=46.64  Aligned_cols=35  Identities=43%  Similarity=0.935  Sum_probs=23.9

Q ss_pred             hHHHHHHHHHHhhcCC-CC--CCCCCC----CCCCCCCCCCCccccc
Q 009603          373 PEEVRALQVLKNSLDL-PH--RFGWNG----DPCVPQQHPWSGADCQ  412 (531)
Q Consensus       373 ~~~~~aL~~~k~~~~~-~~--~~~W~~----~~C~~~~~~w~gv~C~  412 (531)
                      ++|+++|++||+.+.. +.  ..+|+.    +||     .|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence            5799999999999984 32  358974    455     69999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.92  E-value=0.00028  Score=74.05  Aligned_cols=79  Identities=30%  Similarity=0.530  Sum_probs=47.4

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+++.|.+. .+|..+..++.|+.|+++.|+++ .+|...+.++.|+.|++++|+++ .+|..+..+..|+.|.+++
T Consensus       142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN  218 (394)
T ss_pred             cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence            556666666665 33345666666666666666666 55555555666666666666666 5665544455556666655


Q ss_pred             CC
Q 009603          502 NT  503 (531)
Q Consensus       502 N~  503 (531)
                      |.
T Consensus       219 N~  220 (394)
T COG4886         219 NS  220 (394)
T ss_pred             Cc
Confidence            53

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.80  E-value=9.2e-05  Score=79.80  Aligned_cols=81  Identities=26%  Similarity=0.433  Sum_probs=65.1

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc-cccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|++...-  .+..|++|++|||+.|.|. .+|. ....|. |+.|.|++|.++ .+ ..+.+|.+|+.|||
T Consensus       188 ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDL  261 (1096)
T ss_pred             HhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccch
Confidence            4788999999987542  7888999999999999998 6663 233455 999999999887 33 34778999999999


Q ss_pred             cCCCCCCC
Q 009603          500 NGNTLSGR  507 (531)
Q Consensus       500 ~~N~l~g~  507 (531)
                      +.|.|++.
T Consensus       262 syNll~~h  269 (1096)
T KOG1859|consen  262 SYNLLSEH  269 (1096)
T ss_pred             hHhhhhcc
Confidence            99998854

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.79  E-value=0.00067  Score=77.70  Aligned_cols=83  Identities=33%  Similarity=0.406  Sum_probs=74.4

Q ss_pred             eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      ..+..|||++|.=-+.+|..+++|-+|++|+|+...+. .+|..+++|..|.+|++..+.-...+|..+..|++|++|.|
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL  649 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence            45889999998877899999999999999999999999 99999999999999999998877677777777999999998


Q ss_pred             cCCC
Q 009603          500 NGNT  503 (531)
Q Consensus       500 ~~N~  503 (531)
                      -.-.
T Consensus       650 ~~s~  653 (889)
T KOG4658|consen  650 PRSA  653 (889)
T ss_pred             eccc
Confidence            6544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.43  E-value=0.0026  Score=61.25  Aligned_cols=99  Identities=23%  Similarity=0.271  Sum_probs=71.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCC--ccCccCCccccCCCCCCEEecCCCcCCCCCccc---ccCCCCCCE
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN--SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES---LGQLTALRR  496 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N--~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~  496 (531)
                      ++.|++.+.+++-.  ..+..|++|+.|.+|.|  +.++.++.....+++|++|+|+.|++.  ++..   +..+.+|..
T Consensus        45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKS  120 (260)
T ss_pred             hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhh
Confidence            44555555555422  34667889999999999  777788777778899999999999987  2333   456677889


Q ss_pred             EeccCCCCCCCCC---hhhhhhccccceeeec
Q 009603          497 LNLNGNTLSGRVP---AALGGRLLHRASFKYV  525 (531)
Q Consensus       497 L~L~~N~l~g~iP---~~~~~~~~~l~~l~l~  525 (531)
                      |++.+|.-+. +-   ..++.++.+|++|+--
T Consensus       121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence            9999887764 32   3467777777777643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.30  E-value=0.00029  Score=76.11  Aligned_cols=94  Identities=26%  Similarity=0.406  Sum_probs=69.2

Q ss_pred             EEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCccc-ccCCCCCCEEeccCCC
Q 009603          425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLNLNGNT  503 (531)
Q Consensus       425 L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~L~~N~  503 (531)
                      .+.+.|.|. .+..++.-|+.|+.|||++|++. .+. .+..|++|+.|||+.|.|. .+|.. ...+ +|+.|.|.+|.
T Consensus       169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~  243 (1096)
T KOG1859|consen  169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNA  243 (1096)
T ss_pred             hhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccH
Confidence            344445444 34556777899999999999998 333 7889999999999999999 77753 2233 39999999999


Q ss_pred             CCCCCChhhhhhccccceeeecc
Q 009603          504 LSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       504 l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++ .+ .++.+ +.+|..||++|
T Consensus       244 l~-tL-~gie~-LksL~~LDlsy  263 (1096)
T KOG1859|consen  244 LT-TL-RGIEN-LKSLYGLDLSY  263 (1096)
T ss_pred             HH-hh-hhHHh-hhhhhccchhH
Confidence            88 44 23433 45677777774

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.03  E-value=0.0035  Score=66.39  Aligned_cols=83  Identities=30%  Similarity=0.388  Sum_probs=57.1

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|..|.|.+.. ..+..|++|+.|+|+.|.++...  .+..|+.|+.|++++|.++ .++ .+..+.+|+.|++++
T Consensus        97 l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   97 LEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSY  171 (414)
T ss_pred             eeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhcccCCc
Confidence            677888888877442 22667788888888888887333  4556667888888888877 333 345577788888888


Q ss_pred             CCCCCCCCh
Q 009603          502 NTLSGRVPA  510 (531)
Q Consensus       502 N~l~g~iP~  510 (531)
                      |++. .++.
T Consensus       172 n~i~-~ie~  179 (414)
T KOG0531|consen  172 NRIV-DIEN  179 (414)
T ss_pred             chhh-hhhh
Confidence            8877 4443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.0024  Score=62.51  Aligned_cols=72  Identities=21%  Similarity=0.265  Sum_probs=42.1

Q ss_pred             CCCccccccCCCCcceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccC-CccccCCCCCCEEecCCCc
Q 009603          405 PWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYNF  479 (531)
Q Consensus       405 ~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~L~Ls~N~  479 (531)
                      .|.-|.|-...   .++++.|+|+.|.|...|...-..+.+|+.|-|.+..+...- ...+..++.++.|++|.|+
T Consensus        85 dWseI~~ile~---lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen   85 DWSEIGAILEQ---LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             cHHHHHHHHhc---CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            37766664322   235777777777776444322234556777777666665432 2345566667777777663

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.78  E-value=0.0029  Score=66.93  Aligned_cols=98  Identities=32%  Similarity=0.468  Sum_probs=72.4

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      +..+.+..|.+.. +-..+..+.+|+.|+|..|.+. .+...+..|.+|++|+|++|.|+...+  +..+..|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheecc
Confidence            4455566666653 3345788999999999999999 555447889999999999999994333  56777899999999


Q ss_pred             CCCCCCCChhhhhhccccceeeecc
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |.++ .++. +.. +..+..+++.+
T Consensus       150 N~i~-~~~~-~~~-l~~L~~l~l~~  171 (414)
T KOG0531|consen  150 NLIS-DISG-LES-LKSLKLLDLSY  171 (414)
T ss_pred             Ccch-hccC-Ccc-chhhhcccCCc
Confidence            9998 5543 222 45566666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.0019  Score=66.22  Aligned_cols=104  Identities=21%  Similarity=0.206  Sum_probs=67.7

Q ss_pred             EEEEEEccCCCCcc-cCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc--ccccCCCCCCEE
Q 009603          421 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRL  497 (531)
Q Consensus       421 ~l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L  497 (531)
                      ++..|.|+.|+|+- .+...+..+++|..|+|..|..-+.--....-+..|+.|||++|++- ..+  ...+.|+.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence            57788888888872 23344566788888888888532222333445678889999988887 455  356778888888


Q ss_pred             eccCCCCCCC-CChh----hhhhccccceeeec
Q 009603          498 NLNGNTLSGR-VPAA----LGGRLLHRASFKYV  525 (531)
Q Consensus       498 ~L~~N~l~g~-iP~~----~~~~~~~l~~l~l~  525 (531)
                      +++.+.+... +|+.    .......+++|+..
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~  309 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS  309 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecc
Confidence            8888887621 2322    12334456666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.42  E-value=0.018  Score=53.52  Aligned_cols=100  Identities=21%  Similarity=0.303  Sum_probs=70.2

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc--ccccCCCCCCEEec
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNL  499 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~L  499 (531)
                      ...++|+.|.+...  ..|..++.|.+|.|.+|.++-.-|.--..+++|+.|.|.+|.|. .+-  +-+..+++|+.|.+
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeee
Confidence            45789999987632  34667888999999999999555544455778999999999887 333  23667889999999


Q ss_pred             cCCCCCCCCChh---hhhhccccceeeec
Q 009603          500 NGNTLSGRVPAA---LGGRLLHRASFKYV  525 (531)
Q Consensus       500 ~~N~l~g~iP~~---~~~~~~~l~~l~l~  525 (531)
                      -+|..+ ..+.-   +-..+.++..||+.
T Consensus       121 l~Npv~-~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  121 LGNPVE-HKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             cCCchh-cccCceeEEEEecCcceEeehh
Confidence            999876 33321   22334455666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.07  E-value=0.018  Score=55.62  Aligned_cols=83  Identities=19%  Similarity=0.275  Sum_probs=55.9

Q ss_pred             ccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC--cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhh--h
Q 009603          440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN--FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG--R  515 (531)
Q Consensus       440 l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~--~  515 (531)
                      .-.+..|+.|.+.+-.++ .+ ..+..|++|+.|.||.|  ..++.++.....+++|++|+|++|++.  +++.+..  .
T Consensus        39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~  114 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKE  114 (260)
T ss_pred             cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhh
Confidence            334455556666665555 21 24567899999999999  777777776777899999999999986  3444322  2


Q ss_pred             ccccceeeecc
Q 009603          516 LLHRASFKYVW  526 (531)
Q Consensus       516 ~~~l~~l~l~~  526 (531)
                      +.+|..|++..
T Consensus       115 l~nL~~Ldl~n  125 (260)
T KOG2739|consen  115 LENLKSLDLFN  125 (260)
T ss_pred             hcchhhhhccc
Confidence            33455666553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.0079  Score=61.83  Aligned_cols=83  Identities=23%  Similarity=0.325  Sum_probs=55.0

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCC--ccccCCCCCCEEecCCCcCCC-CCccc-----ccCCCC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP--SSLGTIASLEVLDLSYNFFNG-SIPES-----LGQLTA  493 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g-~iP~~-----l~~l~~  493 (531)
                      +..|.|+.|+..+.-......+..|+.|||++|++- ..+  ...+.++.|+.|+++.+.+.. .+|+.     ...+++
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k  302 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK  302 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence            667788888633333344455677888888888775 333  456777888888888877763 12322     345678


Q ss_pred             CCEEeccCCCCC
Q 009603          494 LRRLNLNGNTLS  505 (531)
Q Consensus       494 L~~L~L~~N~l~  505 (531)
                      |+.|+++.|++.
T Consensus       303 L~~L~i~~N~I~  314 (505)
T KOG3207|consen  303 LEYLNISENNIR  314 (505)
T ss_pred             ceeeecccCccc
Confidence            888888888874

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.61  E-value=0.0034  Score=60.92  Aligned_cols=65  Identities=32%  Similarity=0.367  Sum_probs=33.0

Q ss_pred             CCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc--cccCCCCCCEEeccCCCCCCCCC
Q 009603          442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLNLNGNTLSGRVP  509 (531)
Q Consensus       442 ~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~L~~N~l~g~iP  509 (531)
                      +|+.|+.|.||-|.++..-  .+..|++|+.|.|..|.|. .+-+  -+.++++|+.|-|..|.-.|.-+
T Consensus        39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence            4555555555555555222  2445555555555555554 2221  23455555555555555555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.56  E-value=0.015  Score=33.99  Aligned_cols=18  Identities=61%  Similarity=0.719  Sum_probs=8.1

Q ss_pred             CCEEecCCCcCCCCCcccc
Q 009603          470 LEVLDLSYNFFNGSIPESL  488 (531)
Q Consensus       470 L~~L~Ls~N~l~g~iP~~l  488 (531)
                      |++|||++|+|+ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444444444444 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.93  E-value=0.0071  Score=59.31  Aligned_cols=86  Identities=20%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             CCCEEEccCCccCcc-CCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC-CCCCCCCChhhhhhcccccee
Q 009603          445 HLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG-NTLSGRVPAALGGRLLHRASF  522 (531)
Q Consensus       445 ~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~-N~l~g~iP~~~~~~~~~l~~l  522 (531)
                      .|++||||+..++-. +-.-+.+|.+|+.|.|.++++.-.|-..+.+-.+|+.|+|+. |.|+..--..+...+..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            467777777666521 223355677777777777777766666777777777777775 334422122334455566777


Q ss_pred             eeccccCC
Q 009603          523 KYVWAMDY  530 (531)
Q Consensus       523 ~l~~~~~~  530 (531)
                      |++|+.++
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            77777653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.70  E-value=0.0042  Score=58.84  Aligned_cols=82  Identities=18%  Similarity=0.147  Sum_probs=72.5

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      +++.|||+.|.+. .+...+..++.|..|+|+-|++. .+|..++++..+..+++..|.++ ..|.+++++++++.+++.
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            5889999999876 34556777888999999999998 78999999999999999999998 899999999999999999


Q ss_pred             CCCCC
Q 009603          501 GNTLS  505 (531)
Q Consensus       501 ~N~l~  505 (531)
                      .|.|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99876

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.47  E-value=0.23  Score=51.82  Aligned_cols=12  Identities=33%  Similarity=0.564  Sum_probs=5.9

Q ss_pred             CCCEEeccCCCC
Q 009603          493 ALRRLNLNGNTL  504 (531)
Q Consensus       493 ~L~~L~L~~N~l  504 (531)
                      +|++|++++|..
T Consensus       157 SLk~L~Is~c~~  168 (426)
T PRK15386        157 SLKTLSLTGCSN  168 (426)
T ss_pred             cccEEEecCCCc
Confidence            355555554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.31  E-value=0.14  Score=47.76  Aligned_cols=60  Identities=25%  Similarity=0.361  Sum_probs=49.1

Q ss_pred             CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCC
Q 009603          444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS  505 (531)
Q Consensus       444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~  505 (531)
                      .....+||++|.+. .++ .|..++.|.+|.|++|+|+..-|.--..+++|..|.|.+|++.
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            45678999999997 333 6778999999999999999666654456788999999999986

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.26  E-value=0.33  Score=50.72  Aligned_cols=10  Identities=10%  Similarity=0.215  Sum_probs=5.2

Q ss_pred             CCCEEEccCC
Q 009603          445 HLQSINLSGN  454 (531)
Q Consensus       445 ~L~~L~Ls~N  454 (531)
                      +|+.|++++|
T Consensus        95 nLe~L~Ls~C  104 (426)
T PRK15386         95 GLEKLTVCHC  104 (426)
T ss_pred             hhhheEccCc
Confidence            4555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.94  E-value=0.1  Score=50.80  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=21.0

Q ss_pred             ccCCCCCCEEEccCCccCccCCcc----ccCCCCCCEEecCCCcCC
Q 009603          440 ISKLRHLQSINLSGNSIRGAIPSS----LGTIASLEVLDLSYNFFN  481 (531)
Q Consensus       440 l~~L~~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~  481 (531)
                      +.++++|+..+||.|.|.-..|+.    +.+-+.|..|.|++|.+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            444555555555555555444433    233445555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.47  E-value=0.061  Score=52.94  Aligned_cols=84  Identities=25%  Similarity=0.298  Sum_probs=66.6

Q ss_pred             EEEEEEccCCCCccc--CcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEE
Q 009603          421 VIDGLGLDNQGLRGF--LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRL  497 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L  497 (531)
                      +|.+++|.+|.|+..  +...+.+|++|+.|+|+.|.++..|-..-..+.+|++|-|.+..+.+.-- ..+..++.++.|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            478999999999853  45567889999999999999996665433567899999999988876544 345678888888


Q ss_pred             eccCCCC
Q 009603          498 NLNGNTL  504 (531)
Q Consensus       498 ~L~~N~l  504 (531)
                      +++.|++
T Consensus       152 HmS~N~~  158 (418)
T KOG2982|consen  152 HMSDNSL  158 (418)
T ss_pred             hhccchh
Confidence            8888844

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.35  E-value=0.13  Score=28.00  Aligned_cols=13  Identities=46%  Similarity=0.738  Sum_probs=5.3

Q ss_pred             CCCEEeccCCCCC
Q 009603          493 ALRRLNLNGNTLS  505 (531)
Q Consensus       493 ~L~~L~L~~N~l~  505 (531)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.23  E-value=0.19  Score=30.41  Aligned_cols=22  Identities=41%  Similarity=0.576  Sum_probs=14.9

Q ss_pred             CCCCCEEeccCCCCCCCCChhhh
Q 009603          491 LTALRRLNLNGNTLSGRVPAALG  513 (531)
Q Consensus       491 l~~L~~L~L~~N~l~g~iP~~~~  513 (531)
                      |++|+.|+|++|+++ .||...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            456777777777777 6776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.23  E-value=0.19  Score=30.41  Aligned_cols=22  Identities=41%  Similarity=0.576  Sum_probs=14.9

Q ss_pred             CCCCCEEeccCCCCCCCCChhhh
Q 009603          491 LTALRRLNLNGNTLSGRVPAALG  513 (531)
Q Consensus       491 l~~L~~L~L~~N~l~g~iP~~~~  513 (531)
                      |++|+.|+|++|+++ .||...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            456777777777777 6776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.14  E-value=0.12  Score=52.05  Aligned_cols=88  Identities=19%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             cCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCC--C--CcccccCCCCCCEEeccCCCCCCCCChhh
Q 009603          441 SKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNG--S--IPESLGQLTALRRLNLNGNTLSGRVPAAL  512 (531)
Q Consensus       441 ~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g--~--iP~~l~~l~~L~~L~L~~N~l~g~iP~~~  512 (531)
                      .+-+.|+.+...+|.+...    +...|..++.|+.+.++.|.+.-  .  +-..+..+++|++|||..|-|+-.--..+
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            3445666666666666421    12234556667777777776541  1  11345678889999999998873222223


Q ss_pred             hhh---ccccceeeecccc
Q 009603          513 GGR---LLHRASFKYVWAM  528 (531)
Q Consensus       513 ~~~---~~~l~~l~l~~~~  528 (531)
                      +..   ..+++.|++++|.
T Consensus       234 akaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             HHHhcccchheeecccccc
Confidence            322   2256777777664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.68  E-value=0.19  Score=27.26  Aligned_cols=13  Identities=46%  Similarity=0.562  Sum_probs=5.4

Q ss_pred             CCCEEecCCCcCC
Q 009603          469 SLEVLDLSYNFFN  481 (531)
Q Consensus       469 ~L~~L~Ls~N~l~  481 (531)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.81  E-value=0.21  Score=56.17  Aligned_cols=86  Identities=23%  Similarity=0.325  Sum_probs=51.3

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCc-cCCccccCCCCCCEEecCCCcCCCCC--cc----cccCCCC
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSI--PE----SLGQLTA  493 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~i--P~----~l~~l~~  493 (531)
                      .|..||+++.+++-.  ..+++|++|+.|.+.+=.+.. ..-..+.+|++|++||+|.......-  ..    .-..|++
T Consensus       174 NL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe  251 (699)
T KOG3665|consen  174 NLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE  251 (699)
T ss_pred             ccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence            366777777776633  456677777776665544431 22235667777888887766554211  11    1124777


Q ss_pred             CCEEeccCCCCCCCC
Q 009603          494 LRRLNLNGNTLSGRV  508 (531)
Q Consensus       494 L~~L~L~~N~l~g~i  508 (531)
                      |+.||.|+..+.+.+
T Consensus       252 LrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  252 LRFLDCSGTDINEEI  266 (699)
T ss_pred             ccEEecCCcchhHHH
Confidence            788887777666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.78  E-value=0.14  Score=57.45  Aligned_cols=102  Identities=18%  Similarity=0.211  Sum_probs=72.5

Q ss_pred             EEEEEEccCCCCcc-cCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-CCcccccCCCCCCEEe
Q 009603          421 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLN  498 (531)
Q Consensus       421 ~l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~  498 (531)
                      .|++|.+.+-.+.. .+.....++++|..||+|+.+++-.  ..+++|++|++|.+.+=.|.- ..-..+.+|++|++||
T Consensus       149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD  226 (699)
T KOG3665|consen  149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD  226 (699)
T ss_pred             ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence            47888888877643 2344567899999999999999833  688899999999888776662 2223577899999999


Q ss_pred             ccCCCCCCCCC---hh---hhhhccccceeeec
Q 009603          499 LNGNTLSGRVP---AA---LGGRLLHRASFKYV  525 (531)
Q Consensus       499 L~~N~l~g~iP---~~---~~~~~~~l~~l~l~  525 (531)
                      +|..... ..+   ..   .+..+++|+.||-+
T Consensus       227 IS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  227 ISRDKNN-DDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             ccccccc-cchHHHHHHHHhcccCccccEEecC
Confidence            9987655 233   21   23344566666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=88.77  E-value=0.57  Score=45.79  Aligned_cols=16  Identities=31%  Similarity=0.422  Sum_probs=12.7

Q ss_pred             CCCCCCEEeccCCCCC
Q 009603          490 QLTALRRLNLNGNTLS  505 (531)
Q Consensus       490 ~l~~L~~L~L~~N~l~  505 (531)
                      .+.+|++|+|..|-|+
T Consensus       212 y~~~LevLDlqDNtft  227 (388)
T COG5238         212 YSHSLEVLDLQDNTFT  227 (388)
T ss_pred             HhCcceeeeccccchh
Confidence            3677888888888886

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=87.37  E-value=0.093  Score=52.74  Aligned_cols=86  Identities=28%  Similarity=0.373  Sum_probs=52.2

Q ss_pred             eEEEEEEccCCCCcc----cCcccccCCCCCCEEEccCCccCccCCcc----c-cCCCCCCEEecCCCcCCCC----Ccc
Q 009603          420 WVIDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGAIPSS----L-GTIASLEVLDLSYNFFNGS----IPE  486 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~----l-~~l~~L~~L~Ls~N~l~g~----iP~  486 (531)
                      .+++.|+|..|-++-    .+...++.+++|+.|+++.+.+...=-..    + ...++|++|.|.+|.++-.    +-.
T Consensus       213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~  292 (382)
T KOG1909|consen  213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA  292 (382)
T ss_pred             CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence            456777777777652    23345666777777777777765221111    1 2356777777777777631    122


Q ss_pred             cccCCCCCCEEeccCCCCC
Q 009603          487 SLGQLTALRRLNLNGNTLS  505 (531)
Q Consensus       487 ~l~~l~~L~~L~L~~N~l~  505 (531)
                      .+...+.|+.|+|++|+|.
T Consensus       293 ~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  293 CMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHhcchhhHHhcCCccccc
Confidence            3445677888888888873

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.10  E-value=0.013  Score=55.64  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=68.9

Q ss_pred             ccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhcc
Q 009603          438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL  517 (531)
Q Consensus       438 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~  517 (531)
                      .++......+.|||+.|++- .+-..+..++.|..|||+.|++. .+|..++++..+..+++..|+++ ..|.+++..+ 
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~-  111 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP-  111 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC-
Confidence            46777788899999999997 55667778899999999999998 89999999999999999999998 8998887653 


Q ss_pred             ccceee
Q 009603          518 HRASFK  523 (531)
Q Consensus       518 ~l~~l~  523 (531)
                      ++..++
T Consensus       112 ~~k~~e  117 (326)
T KOG0473|consen  112 HPKKNE  117 (326)
T ss_pred             Ccchhh
Confidence            555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.77  E-value=1.4  Score=37.72  Aligned_cols=96  Identities=15%  Similarity=0.250  Sum_probs=42.2

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.+.+.. .+...-...+.++++|+.+.+..+ +...-...|..+.+|+.+.+.. .+.-.-...|..+.+|+.+.+..
T Consensus        14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred             CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence            55566553 444433445666667777777664 4423334566666677777754 33312223455566777777755


Q ss_pred             CCCCCCCChhhhhhccccceee
Q 009603          502 NTLSGRVPAALGGRLLHRASFK  523 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~  523 (531)
                      | +. .++....... .+..+.
T Consensus        91 ~-~~-~i~~~~f~~~-~l~~i~  109 (129)
T PF13306_consen   91 N-IT-EIGSSSFSNC-NLKEIN  109 (129)
T ss_dssp             T--B-EEHTTTTTT--T--EEE
T ss_pred             c-cc-EEchhhhcCC-CceEEE
Confidence            4 33 3444333333 344443

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=85.50  E-value=0.84  Score=44.58  Aligned_cols=88  Identities=16%  Similarity=0.156  Sum_probs=58.7

Q ss_pred             EEEccCCCCCCcCCCCCceeeccCcccC------CcccccC--CCCCCCCCcceeeccCCCCCCcceEEeeecCCceeEE
Q 009603           28 MRISCGARQNIHSPPTNTLWFKDFAYTG------GIPANAT--RPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNV   99 (531)
Q Consensus        28 i~IdCG~~~~~~~~~~g~~w~~D~~~~~------~~~~~~~--~~~~~~~~y~t~R~F~~~~g~~~cY~~~~~~~g~ylv   99 (531)
                      ..|+||.+..  +|..|+.|-.|..-.-      |....+.  ...-...+|+|+|+=..    .|.|..|+...|.|-+
T Consensus        62 ~aVncGgdaa--vd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgyd~pik~dgdyal  135 (355)
T KOG3593|consen   62 PAVNCGGDAA--VDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGYDVPIKEDGDYAL  135 (355)
T ss_pred             heeccCChhh--hcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhcccccccCCCceeh
Confidence            4599998764  4667999999842111      2111111  11112347999999643    4789999999999999


Q ss_pred             EEEEecccCCCCCCCCcEEEEEc
Q 009603          100 RIFFGLVTLTSFDHEPLFDISVE  122 (531)
Q Consensus       100 Rl~F~~~~y~~~~~~~~F~v~~~  122 (531)
                      =+.|....++. .+.-.|||.++
T Consensus       136 vlkfaevyF~~-~q~kvfdvrln  157 (355)
T KOG3593|consen  136 VLKFAEVYFKT-CQHKVFDVRLN  157 (355)
T ss_pred             hhhHHHHHHHh-hhhhheeeeec
Confidence            89997764432 24447999999

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.40  E-value=0.83  Score=27.52  Aligned_cols=20  Identities=40%  Similarity=0.610  Sum_probs=13.6

Q ss_pred             CCCCCEEecCCCcCCCCCccc
Q 009603          467 IASLEVLDLSYNFFNGSIPES  487 (531)
Q Consensus       467 l~~L~~L~Ls~N~l~g~iP~~  487 (531)
                      |++|+.|+|++|+|+ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456777778777777 55543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.40  E-value=0.83  Score=27.52  Aligned_cols=20  Identities=40%  Similarity=0.610  Sum_probs=13.6

Q ss_pred             CCCCCEEecCCCcCCCCCccc
Q 009603          467 IASLEVLDLSYNFFNGSIPES  487 (531)
Q Consensus       467 l~~L~~L~Ls~N~l~g~iP~~  487 (531)
                      |++|+.|+|++|+|+ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456777778777777 55543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.50  E-value=0.1  Score=51.03  Aligned_cols=77  Identities=23%  Similarity=0.311  Sum_probs=61.1

Q ss_pred             eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCC-ccccCCCCCCEEecCCCcCCCCCccc-----ccCCCC
Q 009603          420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPES-----LGQLTA  493 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~iP~~-----l~~l~~  493 (531)
                      ..|+.|.|+-|.|+..-|  +..++.|+.|.|..|.|...-. .-+.++++|+.|.|..|.-.|.-+..     +.-|++
T Consensus        41 p~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn  118 (388)
T KOG2123|consen   41 PLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN  118 (388)
T ss_pred             ccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence            348899999999985543  7788999999999999873211 34789999999999999999887753     445788


Q ss_pred             CCEEe
Q 009603          494 LRRLN  498 (531)
Q Consensus       494 L~~L~  498 (531)
                      |+.||
T Consensus       119 LkKLD  123 (388)
T KOG2123|consen  119 LKKLD  123 (388)
T ss_pred             chhcc
Confidence            88775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	531
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-10
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-08
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
            ++ L LD   L G +P+G+S   +L  I+LS N + G IP  +G + +L +L LS N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
           +G+IP  LG   +L  L+LN N  +G +PAA+
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
            ++ L LD   L G +P+G+S   +L  I+LS N + G IP  +G + +L +L LS N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
           +G+IP  LG   +L  L+LN N  +G +PAA+
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
           G++N  L G +P  I+KL  L  + ++  ++ GAIP  L  I +L  LD SYN  +G++P
Sbjct: 85  GINN--LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 486 ESLGQLTALRRLNLNGNTLSGRVPAALG 513
            S+  L  L  +  +GN +SG +P + G
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYG 170

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTA 493
           LP+G+  KL +L  +NL+ N ++         + +L  LDLSYN    S+PE +  +LT 
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQ 182
Query: 494 LRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWAMD 529
           L+ L L  N L   VP  +  RL    S +Y+W  D
Sbjct: 183 LKDLRLYQNQLKS-VPDGVFDRL---TSLQYIWLHD 214

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	531
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-21
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  113 bits (285), Expect = 4e-28
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 35/171 (20%)

Query: 373 PEEVRALQVLKNSLDLPHRF-GWNG--DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
           P++ +AL  +K  L  P     W    D C      W G  C  D  +  + ++ L L  
Sbjct: 5   PQDKQALLQIKKDLGNPTTLSSWLPTTDCC---NRTWLGVLC--DTDTQTYRVNNLDLSG 59

Query: 430 QGLRG------------FL---------------PNGISKLRHLQSINLSGNSIRGAIPS 462
             L              +L               P  I+KL  L  + ++  ++ GAIP 
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 463 SLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
            L  I +L  LD SYN  +G++P S+  L  L  +  +GN +SG +P + G
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  102 bits (256), Expect = 3e-24
 Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + +  + G +P+ +S+++ L +++ S N++ G +P S+ ++ +L  +    N  +G+I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 485 PESLGQLTALRR-LNLNGNTLSGRVPAALG 513
           P+S G  + L   + ++ N L+G++P    
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 97.6 bits (244), Expect = 1e-22
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L    L G         ++ Q I+L+ NS+   +   +G   +L  LDL  N   G++
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPA 510
           P+ L QL  L  LN++ N L G +P 
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 96.1 bits (240), Expect = 4e-22
 Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL-EVLDLSYNFFNGS 483
           L      L G LP  IS L +L  I   GN I GAIP S G+ + L   + +S N   G 
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALG 513
           IP +   L  L  ++L+ N L G      G
Sbjct: 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFG 218

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.0 bits (232), Expect = 5e-21
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + +    L G +P   + L +L  ++LS N + G      G+  + + + L+ N     +
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
              +G    L  L+L  N + G +P  L 
Sbjct: 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLT 265

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score =  107 bits (269), Expect = 2e-27
 Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 31/187 (16%)

Query: 189 GLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKA 248
           GL  +    ++ G       VD  G H+  D         G+ +D               
Sbjct: 1   GLADKVIWAVNAGGES---HVDVHGIHYRKDPLEG---RVGRASDYGMKLPILR------ 48

Query: 249 PNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN 308
            N   + LYQT   + DS     Y + +     Y + L FAE+        Q+VFD+ +N
Sbjct: 49  SNPEDQVLYQTERYNEDS---FGYDIPIKEEGEYVLVLKFAEVYFA--QSQQKVFDVRVN 103

Query: 309 GDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHP-------------KGGSHAI 355
           G    + +D+    G   TA      +++    L+V                     +  
Sbjct: 104 GHTVVKDLDIFDRVG-HSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPK 162

Query: 356 INAIEVF 362
           + A+ + 
Sbjct: 163 VCALFIM 169

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (265), Expect = 4e-24
 Identities = 37/89 (41%), Positives = 54/89 (60%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L LD   L G +P+G+S   +L  I+LS N + G IP  +G + +L +L LS N F+G+I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P  LG   +L  L+LN N  +G +PAA+ 
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (263), Expect = 6e-24
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 14/158 (8%)

Query: 364 IIAVESKTLPEEVRALQVLKNSLDLPHRF-GWNG--DPCVPQQHPWSGADCQFDRTSHKW 420
             A  S++L  E+  L   K+ L   +    W+   +PC      + G  C   R     
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCT-----FDGVTC---RDDKVT 53

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
            ID            + + +  L  L+S+ LS + I G++       ASL  LDLS N  
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112

Query: 481 NGSIPE--SLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
           +G +    SLG  + L+ LN++ NTL      + G +L
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (258), Expect = 3e-23
 Identities = 26/89 (29%), Positives = 47/89 (52%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             + ++   G           +  +++S N + G IP  +G++  L +L+L +N  +GSI
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P+ +G L  L  L+L+ N L GR+P A+ 
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (256), Expect = 5e-23
 Identities = 35/89 (39%), Positives = 49/89 (55%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N G  G +P  +S    L S++LS N + G IPSSLG+++ L  L L  N   G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P+ L  +  L  L L+ N L+G +P+ L 
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLS 487

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (256), Expect = 5e-23
 Identities = 32/89 (35%), Positives = 48/89 (53%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +P  +  ++ L+++ L  N + G IPS L    +L  + LS N   G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P+ +G+L  L  L L+ N+ SG +PA LG
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELG 535

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (254), Expect = 1e-22
 Identities = 30/89 (33%), Positives = 45/89 (50%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +P+ +  L  L+ + L  N + G IP  L  + +LE L L +N   G I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P  L   T L  ++L+ N L+G +P  +G
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =   99 bits (250), Expect = 2e-22
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
           L G++P  I  + +L  +NL  N I G+IP  +G +  L +LDLS N  +G IP+++  L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 492 TALRRLNLNGNTLSGRVP 509
           T L  ++L+ N LSG +P
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.3 bits (243), Expect = 2e-21
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 425 LGLDNQGLRGFLPNGI--SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
           L L +    G +   +  +    LQ + L  N   G IP +L   + L  L LS+N+ +G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
           +IP SLG L+ LR L L  N L G +P  L 
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 3e-21
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGS 483
           L L      G +P        L+S+ LS N+  G +P  +L  +  L+VLDLS+N F+G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 484 IPESLGQLTA-LRRLNLNGNTLSGRVPAALGGRLL 517
           +PESL  L+A L  L+L+ N  SG +   L     
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 3e-21
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    + G +   +S+  +L+ +++S N+    IP  LG  ++L+ LD+S N  +G  
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAAL 512
             ++   T L+ LN++ N   G +P   
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.7 bits (239), Expect = 6e-21
 Identities = 23/90 (25%), Positives = 40/90 (44%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
              +    +G     +++L      N++     G    +     S+  LD+SYN  +G I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           P+ +G +  L  LNL  N +SG +P  +G 
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGD 678

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 1e-20
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGS 483
           L + +    G +P     L+ LQ ++L+ N   G IP  L G   +L  LDLS N F G+
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
           +P   G  + L  L L+ N  SG +P     ++
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.6 bits (223), Expect = 5e-19
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 425 LGLDNQGLRGFLPNGI---SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           L L    + G    G         L+ + +SGN I G +   +    +LE LD+S N F+
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
             IP  LG  +AL+ L+++GN LSG    A+ 
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.0 bits (219), Expect = 2e-18
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L N  L G +P  I +L +L  + LS NS  G IP+ LG   SL  LDL+ N FNG+I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           P ++ + +      +  N ++G+    +  
Sbjct: 555 PAAMFKQS----GKIAANFIAGKRYVYIKN 580

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 425 LGLDNQGLRGFLPNG--ISKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFN 481
           L L    L G +     +     L+ +N+S N++      S G  + SLEVLDLS N  +
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 482 GSIPESL---GQLTALRRLNLNGNTLSGRVP 509
           G+             L+ L ++GN +SG V 
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 9e-16
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR--GAIPSSLGTIASLEVLDLSYNFFNG 482
             +    + G     I      +  + +GN +   G     L  +++    +++   + G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
               +     ++  L+++ N LSG +P  +G
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.9 bits (177), Expect = 2e-13
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
           + G +P+ +  LR L  ++LS N + G IP ++  +  L  +DLS N  +G IPE  GQ 
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQF 726

Query: 492 TALRRLNLNGN 502
                     N
Sbjct: 727 ETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N    G +P  +   R L  ++L+ N   G IP+++   +      ++ NF  G  
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKR 574

Query: 485 PESLGQLTALRRLNL--NGNTLSGRVPAALG 513
              +      +  +   N     G     L 
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.9 bits (221), Expect = 6e-19
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N     FLP+  ++LR+L  ++LS   +    P++  +++SL+VL++S+N F       
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGG 514
              L +L+ L+ + N +       L  
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++         L HL ++ L+GN I+     +   ++SL+ L           
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 485 PESLGQLTALRRLNLNGNTL-SGRVPAALGG 514
              +G L  L+ LN+  N + S ++P     
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.3 bits (209), Expect = 2e-17
 Identities = 17/88 (19%), Positives = 32/88 (36%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           L    LR            LQ ++LS   I+     +  +++ L  L L+ N        
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   L++L++L      L+      +G 
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGH 122

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYNFFNGSIPE 486
                R       + L  L+ + ++GNS +    P     + +L  LDLS        P 
Sbjct: 430 HTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   L++L+ LN++ N            
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L    P   + L  LQ +N+S N+           + SL+VLD S N    S 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 485 PESLGQL-TALRRLNLNGNTLSG 506
            + L    ++L  LNL  N  + 
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGS 483
           L      L       I  L+ L+ +N++ N I+   +P     + +LE LDLS N     
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 484 IPESLGQLTALR----RLNLNGNTLSGRVPAALGG 514
               L  L  +      L+L+ N ++   P A   
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 13/84 (15%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           + +    L  L+ ++   ++++     S   ++ +L  LD+S+     +       L++L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 495 RRLNLNGNTLSGRVPAALGGRLLH 518
             L + GN+        +   L +
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRN 471

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +P+ +      ++++LS N +R     S  +   L+VLDLS          +   L+ L 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 496 RLNLNGNTLSGRVPAALGG 514
            L L GN +      A  G
Sbjct: 80  TLILTGNPIQSLALGAFSG 98

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEV----LDLSYNFFNGS 483
            N      LP   S L +L+ ++LS N I+    + L  +  + +    LDLS N  N  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
            P +  ++  L +L L  N  S  V       L
Sbjct: 193 QPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGL 224

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 410 DCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSI--RGAIPSSLGTI 467
           +C+F +     +     L     +G        L  L+ ++LS N +  +G    S    
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 468 ASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
            SL+ LDLS+N     +  +   L  L  L+   + L      ++   L
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA-SLEVLDLSYNFFNGSIPE 486
            N             L  LQ ++ S N I  +    L     SL  L+L+ N F  +   
Sbjct: 503 HNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 487 S--LGQLTALRRLNLNGNTLSGRVPAALGGRLL 517
              L  +   R+L +    +    P+   G  +
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQ----SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           L L +  ++      +  L  +     S++LS N +    P +   I  L  L L  NF 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 212

Query: 481 NGSIPE-SLGQLTALRRLNLNGNTLSG 506
           + ++ +  +  L  L    L       
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--G 482
           L L N     F    +  L+ L   +  G         S   + SLE LDLS N  +  G
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR 519
              +S    T+L+ L+L+ N +       LG   L  
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 2/78 (2%)

Query: 429 NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
                  + +  + L ++ S +L   +I      S       + L+L    F       L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKL 324

Query: 489 GQLTALRRLNLNGNTLSG 506
             L  L   +  G     
Sbjct: 325 KSLKRLTFTSNKGGNAFS 342

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 9/100 (9%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGA------IPSSLGTIASLEVLDLSYNFFN 481
           +N      +   I  L  L+   L     R          S+L  + +L + +    + +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 482 GS---IPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
                I +    LT +   +L   T+      +      H
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 5e-17
 Identities = 19/90 (21%), Positives = 29/90 (32%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           L      G     +  L HL  +NL  N            +  L+++DL  N  N     
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
                 +L+ LNL  N ++       G   
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 9e-16
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  ++    N   K ++L +++LS N +      +   + +L+ L LS N      
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 485 PESLG--QLTALRRLNLNGNTLSGRVPAALGG 514
            E L     ++L++L L+ N +    P     
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N+ L        +   +L  ++L  NSI+    +      +L  LDLS+N  + +   +
Sbjct: 82  HNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALG 513
             QL  L+ L L+ N +       L 
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELD 166

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 18/90 (20%), Positives = 28/90 (31%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +    P    KL  L+ +NL  N +      +     +L  L L  N      
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                +   L  L+L+ N LS         
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGS 483
           L L    +     +  S L HL+ ++L  N I   +       + ++  + LSYN +   
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 484 IPESLGQLTALRRLNLNGNTLSG 506
              S   + +L+RL L    L  
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.0 bits (190), Expect = 6e-15
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFFNG 482
           L L + GL         +L +LQ + LS N I+      L   A  SL+ L+LS N    
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
             P     +  L  L LN   L   +   L   L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 8e-15
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  LR       ++   L S+++  N+I    P     +  L+VL+L +N  +   
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            ++    T L  L+L  N++          
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 8e-15
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 425 LGLDNQGLRGFLPNG-ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG- 482
           L L    +   L       L ++  I LS N       +S   + SL+ L L        
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 483 -SIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            S P     L  L  L+L+ N ++      L G
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
             +  L   +P+ +    ++  +NL+ N +R    ++    + L  LD+ +N  +   PE
Sbjct: 11  CSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
              +L  L+ LNL  N LS         
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSDKTFAF 95

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 425 LGLDNQGLRGFLPNGIS---KLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSYNF 479
           L L+N  L   L   +        +++++LS + +     ++       +L +LDLSYN 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            N    +S   L  L    L  N +      +L G
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSI--------RGAIPSSLGTIASLEVLDLS 476
           L L N  +     + +  L  L+ ++L  N++         G     L  ++ L +L+L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 477 YNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            N F+    E    L  L+ ++L  N L+    +    
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L     +  + L  L+   L  N+I+     SL  + ++  L+L  +F   SI
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 485 ---------PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                      S   L  L  LN+  N + G       G
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 7e-14
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNG 482
           + L          N  + +  LQ + L   +++   + PS    + +L +LDLS N    
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 483 SIPESLGQLTALRRLNLNGNTLS 505
              + L  L  L  L+L  N L+
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 8e-14
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 425 LGLDNQGLRGFLPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
           L L N  ++      +       L+ + LS N I+   P     I  L  L L+      
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 483 SIPESLG---QLTALRRLNLNGNTLSGRVPAALGG 514
           S+ E L      T++R L+L+ + LS        G
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L++ G           L  L+ I+L  N++     S      SL+ L+L  N      
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 485 PESLG-QLTALRRLNLNGNTLSG 506
            +  G     L  L++  N    
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 1e-12
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLR--HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
           L L N  L          L+  +L  ++LS N++      S   +  LE   L YN    
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 483 SIPESLGQLTALRRLNLNGNTLSG 506
               SL  L  +R LNL  +    
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQ 310

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG----TIASLEVLDLSYNFF 480
           L +++  + G   N  + L +L+ ++LS +       ++        + L +L+L+ N  
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPA 510
           +    ++   L  L  L+L  N +   +  
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             L       F+    S L  L   NL+ N I      +   +  LEVLDL  N     +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHIL---NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 485 P-ESLGQLTALRRLNLNGNTLSGRVPAALGG 514
             +    L  +  + L+ N        +   
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             +    L          L+ L+ +N+  N I G   +    + +L+ L LS +F +   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 485 PESLG----QLTALRRLNLNGNTLSGRVPAALGG 514
             +        + L  LNL  N +S     A   
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGN---------SIRGAIPSSLGTIASLEVLDLSYN 478
            N  ++    + +  L +++ +NL  +         S+      S   +  LE L++  N
Sbjct: 281 YNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 479 FFNGSIPESLGQLTALRRLNLNGNTLSGR 507
              G        L  L+ L+L+ +  S R
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTI-ASLEVLDLSYNFFNGSIPE 486
            N  L     +  +    L+S+NL  N I        G    +L  LD+ +N F+ +   
Sbjct: 569 LNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

Query: 487 SLGQLTALRRLNLNGNTLSGRV----PAALGGRLL 517
               +  +   + N   LS       P    G  +
Sbjct: 628 IAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPV 662

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA--------IPSSLGTIASLEVLDLS 476
           + + N      LP  +  L  +Q IN++ N               +       ++++ + 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 477 YN-FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           YN      +  SL ++  L  L    N L G    A G 
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGS 351

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 428 DNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVL------DLSYNFF 480
            N+ L     +   + L +L  I+LS NS     P+     ++L+        D   N  
Sbjct: 497 FNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
               PE +    +L +L +  N +   V   +   +
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNI 589

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N      +   + K++ L  +    N + G    + G+   L  L+L+YN         
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANF 372

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGGRLL 517
            G    +  L+   N L   +P     + +
Sbjct: 373 CGFTEQVENLSFAHNKLKY-IPNIFDAKSV 401

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG--- 482
            +D +     L     K  ++ SINLS N I         T + L  ++L  N       
Sbjct: 416 SVDGKNFDP-LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 483 ----SIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
                  E+      L  ++L  N L+  +     
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFR 508

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 9e-15
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 439 GISKLRHLQSINLSGNSIRG-------AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
               +  + +I+ S N I          +  +     ++  ++LS N  +    E     
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 492 TALRRLNLNGNTLSG 506
           + L  +NL GN L+ 
Sbjct: 457 SPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 11/139 (7%)

Query: 384 NSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKL 443
                     WN +  +       G     +       + GL L+  G  G +P+ I +L
Sbjct: 50  QGFGTQPGANWNFNKELDMWGAQPGVSL--NSNGR---VTGLSLEGFGASGRVPDAIGQL 104

Query: 444 RHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPESLG--QLTALRRL 497
             L+ + L  +  +       P  +    S E        +  +  +       + L + 
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 498 NLNGNTLSGRVPAALGGRL 516
            +N +     +  +    L
Sbjct: 165 CINSDPQQKSIKKSSRITL 183

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-------AIPSSLGTIASLEVLDLSY 477
           + L N  +  F     S    L SINL GN +             +      L  +DL +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 478 NFFNGSIPE-SLGQLTALRRLNLNGNTLSGRVPAALG 513
           N       +     L  L  ++L+ N+ S   P    
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG----SIPESLGQLTALR 495
           ++    +  ++L G    G +P ++G +  LEVL L  +          P+ +    +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 496 RLNLNGNTLSGRVPAALGGRLL 517
           +                     
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDF 158

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.2 bits (180), Expect = 8e-14
 Identities = 10/101 (9%), Positives = 28/101 (27%), Gaps = 20/101 (19%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-------------------AIPSSLG 465
           +G  +  +  F+   + +L  L+   +  +                              
Sbjct: 188 IGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 466 TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSG 506
            +  L  +++        +P  L  L  ++ +N+  N    
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 9/108 (8%), Positives = 25/108 (23%), Gaps = 20/108 (18%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             +++   +  +            I    N+I   +  ++  +  L    +  + F    
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 485 P-------------------ESLGQLTALRRLNLNGNTLSGRVPAALG 513
                                    L  L  + +       ++P  L 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL--GTIASLEVLDLSYNFFNG 482
           L L    +     N       +++++ + N ++  IP+     +++ +  +D SYN    
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 483 -------SIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
                   +  +  +   +  +NL+ N +S        
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            NQ L G           L S+NL+ N I     +  G    +E L  ++N     IP  
Sbjct: 339 YNQ-LEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395

Query: 488 L--GQLTALRRLNLNGNTLSGRVPAALGG 514
                ++ +  ++ + N +          
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 9/87 (10%)

Query: 436 LPNGISKLRHLQSI------NLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLG 489
            P        L+        +  GN      P  +    SL  L +  N     + E + 
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI- 585

Query: 490 QLTALRRLNLNGNTLSGRVPAALGGRL 516
               +  L++  N       + +   +
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYI 611

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 3/78 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
                       P GI+    L  + +  N IR  +   +    ++ VLD+  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP--NISVLDIKDNPNISID 603

Query: 485 PESLGQLTALRRLNLNGN 502
              +          L  +
Sbjct: 604 LSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 431 GLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSYNFFNGSIPESL 488
             R F P GIS     +         +            + L    ++ +    SI +S 
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 489 GQLTALRRLNLNGNTLSGRVPAALG 513
                  ++    N ++  V  A+ 
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVM 203

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L   L   I  L  L+ ++L G +     P   G  A L+ L L       ++
Sbjct: 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P  + +LT L +L+L G     R+P+ + 
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + +D  GL   LP+ + +   L+++ L+ N +R A+P+S+ ++  L  L +        +
Sbjct: 109 MTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 485 PESLGQ---------LTALRRLNLNGNTLSGRVPAALG 513
           PE L           L  L+ L L    +   +PA++ 
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 9e-14
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 436 LPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
            P        L+ + L   +++   +P  +  +  LE LDL        +P  + QL A 
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 495 RRLNLNGNTLS 505
             + +  +  +
Sbjct: 304 CIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA---------SLEVLDLSYNFFNGSIPE 486
           LP  I+ L  L+ +++        +P  L +           +L+ L L +     S+P 
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALG 513
           S+  L  L+ L +  + LS  +  A+ 
Sbjct: 201 SIANLQNLKSLKIRNSPLSA-LGPAIH 226

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSYNFFNGSI 484
            D            +   + Q    +G +++ A    L   T      L+L         
Sbjct: 41  ADRNRWH--SAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QF 96

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P+   +L+ L+ + ++   L   +P  + 
Sbjct: 97  PDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 10/59 (16%), Positives = 22/59 (37%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           LP  I +L  L+ ++L G      +PS +  + +  ++ +  +              A 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.2 bits (188), Expect = 8e-15
 Identities = 14/90 (15%), Positives = 26/90 (28%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +     +       L ++ L+ N +     ++L    +L+ L       +   
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
              L     L  L L  N +S         
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA---SLEVLDLSYNFFN 481
           L L +  L          L  LQ +NL GN           ++     LE+L LS+   +
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                +   L  +  ++L+ N L+     AL  
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 1/87 (1%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N  L       +S  + L+ +      I       L    +LE L L  N  +      
Sbjct: 90  ANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGG 514
                 L+ L+   N +       +  
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSS 175

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 17/90 (18%), Positives = 29/90 (32%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L      L        S+L +L  ++L+   I      +  +   L+ L L+ N      
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
             +L    AL+ L      +S      L  
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHN 127

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L          N       LQ ++L+   +   +PS L  +++L+ L LS N F    
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPA 510
             S     +L  L++ GNT    +  
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGS 483
           L L              +   L+ ++L+   ++     S    +  L+VL+LS++  + S
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 484 IPESLGQLTALRRLNLNGNTLSG 506
             +    L AL+ LNL GN    
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTAL 494
           LP+G+  L  L+ + LS N        S     SL  L +  N     +    L  L  L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 495 RRLNLNGNTLSG 506
           R L+L+ + +  
Sbjct: 353 RELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L     G+       +   + L+S+ L  N I             L+VLD   N  +   
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 485 PESLGQLTALRR--LNLNGNTLSGRVPAALGGRLLH 518
            E +  L       LNLNGN ++G  P A    +  
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 5e-12
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L L             S    L  +++ GN+ R  + +  L  + +L  LDLS++    S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 484 --IPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                 L  L+ L+ LNL+ N        A   
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 434 GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLT 492
                 +  L HLQS+NLS N        +      LE+LDL++        +S    L 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 493 ALRRLNLNGNTLSGRVPAALGG 514
            L+ LNL+ + L         G
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDG 447

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L     +  + L+ +  ++LS N +  +   +L  +  +  L+L+ N  +  +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  L+  R +NL  N L  
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 428 DNQ--GLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
            N          N +  L  L+ + LS   +      +  ++  +  +DLS+N    S  
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 486 ESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           E+L  L  +  LNL  N +S  +P+ L  
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPI 545

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLR--HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
              ++       P     L    ++SINL  +       ++    + L+ LDL+    + 
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            +P  L  L+ L++L L+ N        +   
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 428 DNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-- 484
             + L+          L  L+ +NLS + +  +       + +L+ L+L  N F      
Sbjct: 409 FTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 485 -PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
              SL  L  L  L L+   LS     A   
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
            +N GL   +P  +      + +  S N +     ++   + +L  LDL+         +
Sbjct: 19  CENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +      L  L L  N L      AL G
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSG 103

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 3/97 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEV--LDLSYNFFNG 482
           L L +  +             L+ ++   N+I       + ++       L+L+ N    
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-A 192

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR 519
            I          + LN  G      +   L    +  
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 425 LGLDNQGLRGFLPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFF 480
           L          +  G+    ++ L              P+    +   S+E ++L  ++F
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                 +    + L+ L+L    LS  +P+ L G
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 4/83 (4%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSYNFFNGSIPESLGQLTA 493
           +  G       QS+N  G      I   L   TI SL +            P     L  
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 494 --LRRLNLNGNTLSGRVPAALGG 514
             +  +NL  +            
Sbjct: 254 MSVESINLQKHYFFNISSNTFHC 276

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N+ L       +S L+ +  +NL+ N I   +PS L  ++    ++L  N  + +    
Sbjct: 509 HNR-LTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC--- 563

Query: 488 LGQLTALRR-LNLNGNTLSGRV------PAALGGRLL 517
                        N   L          P  L G  L
Sbjct: 564 --SNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRL 598

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +          L HL ++ L+GN I+   P S   + SLE L           
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 485 PESLGQLTALRRLNLNGNTLSG-RVPAALGG 514
              +GQL  L++LN+  N +   ++PA    
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 21/81 (25%), Positives = 31/81 (38%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L          L  LQ +N+S N++     S    + SL  LD S+N    S 
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 485 PESLGQLTALRRLNLNGNTLS 505
                   +L   NL  N+++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 7e-14
 Identities = 16/85 (18%), Positives = 31/85 (36%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N      L N  +   +L  ++LS   +         T+  L++L++S+N         
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

Query: 488 LGQLTALRRLNLNGNTLSGRVPAAL 512
             QL +L  L+ + N +        
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQ 541

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 1/91 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGS 483
           L +     +         L  L ++ ++GNS +    S+      +L  LDLS       
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                  L  L+ LN++ N L     +    
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPE 486
            N  ++ F P   S L  L+++      +       +G + +L+ L++++NF +   +P 
Sbjct: 89  GNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
               LT L  ++L+ N +       L  
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQF 175

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 429 NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
           N  L+       S    LQ ++LS   I      +   +  L  L L+ N      P S 
Sbjct: 42  NP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

Query: 489 GQLTALRRLNLNGNTLSGRVPAALGG 514
             LT+L  L      L+      +G 
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQ 126

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           +      L  LQ ++   ++++     S+  ++  L  LD+SY             LT+L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 495 RRLNLNGNTLSGRVPAALGGRLLH 518
             L + GN+      + +     +
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTN 474

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
             +Q L   +P+ I      ++I+LS N ++     S    + L+ LDLS         +
Sbjct: 18  CMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   L  L  L L GN +    P +  G
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGSFSG 102

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGS 483
           L      L       I +L  L+ +N++ N I    +P+    + +L  +DLSYN+    
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 484 IPESLGQLTALR----RLNLNGNTLS 505
               L  L         L+++ N + 
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSL----GTIASLEVLDLSYNFFNGSIPESLGQL 491
           LP   S L +L  ++LS N I+    + L            LD+S N  +  I +   Q 
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG 203

Query: 492 TALRRLNLNGNTLSGRVPAALGGRL 516
             L  L L GN  S  +       L
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNL 228

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    L+ F    +  L+ L    L+ N     I      + SL  LDLS N  + S 
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSL---TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSG 366

Query: 485 PESLGQL--TALRRLNLNGNTLS 505
             S   L   +LR L+L+ N   
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 432 LRGFLPNGISKLRHL----QSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
           ++    N +  LR       S+++S N I      +   I  L  L L  NF + +I ++
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT 223

Query: 488 LGQ-LTALRRLNLNGNTLSG 506
             Q L  L    L       
Sbjct: 224 CLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
                 L ++ +++L+G SI+      +      + L +         P     L  L+ 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKS 332

Query: 497 LNLNGNTLS 505
           L L  N  S
Sbjct: 333 LTLTMNKGS 341

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 10/99 (10%), Positives = 23/99 (23%), Gaps = 8/99 (8%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE--------VLDLSYNF 479
            N      +   +  L  L    L     +      +   + +E           L+Y  
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
                      L  +  ++L G ++          +   
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQ--SINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479
           I G   D + L  F P+ +  L  +      L+  +           +A++  + L+   
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 480 FNGSIPESLGQLTALRRLNLNGNTLSG 506
                 E + +    + L++    L  
Sbjct: 297 IKY--LEDVPKHFKWQSLSIIRCQLKQ 321

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG---- 482
            D            S L+ L  + L        +P  L  +  L+ L+++ N        
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

Query: 483 -----SIPESLGQLTALRRLNLNGNTLSG 506
                 + +       ++   +  N L  
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.8 bits (181), Expect = 6e-14
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 436 LPNGI--SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY------NFFNGSIPES 487
           L +    + L +L ++++S N      P+     + L+   + +      N      P  
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGGRL 516
           +    +L +L +  N +   V   L  +L
Sbjct: 802 ITTCPSLIQLQIGSNDIRK-VDEKLTPQL 829

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.8 bits (181), Expect = 7e-14
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 12/92 (13%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG---------AIPSSLGTIASLEVLDL 475
           + L N      LP+ +  L  LQS+N++ N              +     T   +++  +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 476 SYNFFNGSIPES--LGQLTALRRLNLNGNTLS 505
            YN      P S  L ++  L  L+   N + 
Sbjct: 556 GYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 6/90 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           +G     +  F+   I +L  LQ I  + +       +        E  +  Y     + 
Sbjct: 430 IGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENE 483

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
             S   L  L  + L       ++P  L  
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 436 LPN--GISKLRHLQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSYNFFNGSIPESL 488
           +PN      +  + S++ S N I     +   ++      +   + LSYN       E  
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 489 GQLTALRRLNLNGNTLS 505
              + +  + L+ N ++
Sbjct: 694 ATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 7/79 (8%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF-------NGSIPES 487
                  K  +  ++ LS N I+        T + +  + LS N               +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 488 LGQLTALRRLNLNGNTLSG 506
                 L  ++L  N L+ 
Sbjct: 724 YKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 10/96 (10%)

Query: 436 LPNGISKLRHLQSINL------SGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLG 489
            P        L++  +       GN I    P+ + T  SL  L +  N     + E L 
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL- 825

Query: 490 QLTALRRLNLNGNTL-SGRVPAALGGRLLHRASFKY 524
               L  L++  N   S  V +             Y
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-LTALR 495
              + K+  L  ++   N +R     + GT   L  L L YN     IPE        + 
Sbjct: 566 SASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622

Query: 496 RLNLNGNTLSGRVPAALGGRLLHR 519
            L  + N L   +P     + ++ 
Sbjct: 623 GLGFSHNKLKY-IPNIFNAKSVYV 645

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 9e-11
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 395 NGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN 454
             D  VP Q   +    + D  + K + + L   N        N      +  + N   +
Sbjct: 252 TKDANVPIQLKETAEYIK-DYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELD 309

Query: 455 SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                    L     +  L L+     G +P+++GQLT L+ L+   ++ +       G 
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGD 368

Query: 515 RLL 517
             L
Sbjct: 369 EEL 371

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 18/192 (9%)

Query: 326 YTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNS 385
           YT    +        T +V           +       I   E+    ++ +AL+ +  +
Sbjct: 221 YTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEA 280

Query: 386 LDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWV-IDGLGLDNQGLRGFLPNGISKLR 444
           LD  + + +               +  F++    W    G+ LDN G             
Sbjct: 281 LDGKN-WRYYSGTINNT---IHSLNWNFNKELDMWGDQPGVDLDNNG------------- 323

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL 504
            +  ++L+G   +G +P ++G +  L+VL    +    S      +           + +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 505 SGRVPAALGGRL 516
                       
Sbjct: 384 RMHYKKMFLDYD 395

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGS 483
              +   +    P GI+    L  + +  N IR  +   L     L +LD++ N   +  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTP--QLYILDIADNPNISID 843

Query: 484 IPESLGQLTA-LRRLNLNGNTL 504
           +      + A +  L  +    
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNFFNGSIPESLG--- 489
           +P    +    ++ +  S N ++  IP+  +  ++  +  +D SYN   GS   ++    
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSM 667

Query: 490 ---QLTALRRLNLNGNTLSGRVPAALGG 514
              +      + L+ N +          
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFAT 695

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.2 bits (165), Expect = 3e-12
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +     N +  L  L+ +N+  N I     S L  ++ L  L L+ N      
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
            E +G LT L  L L+ N ++ 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 4e-11
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  L S+ L+ N +       +G + +L  L LS N      P  L  L+ +   +
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

Query: 499 LNGNTLS 505
                + 
Sbjct: 340 FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 5e-11
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  +     + ++ L  L  + +  N I     +++  +  L++L++  N  +   
Sbjct: 226 LKIGNNKITDL--SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-- 279

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
              L  L+ L  L LN N L       +GG
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
            + +  L +L+ + L+ ++I    P  L  +  +  L+L  N  N S    L  +T L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH-NLSDLSPLSNMTGLNY 159

Query: 497 LNLNGNTLSG 506
           L +  + +  
Sbjct: 160 LTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 5e-10
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   +    P  +S L  L ++ +  N I     S+L  + +L  L L+ +  +   
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS 126

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           P  L  LT +  LNL  N       + L  
Sbjct: 127 P--LANLTKMYSLNLGANHNLS-DLSPLSN 153

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
           GI  L +L+ +NL+GN I    P  L  +  L  L +  N    +   +L  LT LR L 
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN--KITDISALQNLTNLRELY 116

Query: 499 LNGNTLSG 506
           LN + +S 
Sbjct: 117 LNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N  L     + +S +  L  + ++ + ++   P  +  +  L  L L+YN      P  
Sbjct: 141 ANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-- 194

Query: 488 LGQLTALRRLNLNGNTLSG 506
           L  LT+L       N ++ 
Sbjct: 195 LASLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ +  L S+ +  N I    P  L  ++ L  L++  N  +     ++  LT L+ LN
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLN 271

Query: 499 LNGNTLSG 506
           +  N +S 
Sbjct: 272 VGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            I+ L  L S++L+ N I    P  L ++ SL       N      P  +  +T L  L 
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227

Query: 499 LNGNTLSG 506
           +  N ++ 
Sbjct: 228 IGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   +    P  ++ L  L       N I    P  +  +  L  L +  N      
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  L+ L  L +  N +S 
Sbjct: 238 P--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             L    +   +     +L  +  + ++G  +       +  + +LE L+L+ N      
Sbjct: 27  AVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDIS 82

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P  L  L  L  L +  N ++
Sbjct: 83  P--LSNLVKLTNLYIGTNKIT 101

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 436 LPNGISK------LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLG 489
           LP  I++      L       L   S+   +      + S+  L ++      SI   + 
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IE 63

Query: 490 QLTALRRLNLNGNTLSG 506
            LT L  LNLNGN ++ 
Sbjct: 64  YLTNLEYLNLNGNQITD 80

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478
           L L+N  L       I  L +L ++ LS N I    P  L +++ ++  D +  
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 17/67 (25%), Positives = 34/67 (50%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
           N IS L +L+ + + G  +      +L  + SL +LD+S++  + SI   +  L  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 498 NLNGNTL 504
           +L+ N  
Sbjct: 142 DLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +  + +       +S L  L  +++S ++   +I + + T+  +  +DLSYN     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 485 PESLGQLTALRRLNLNGNTLS 505
              L  L  L+ LN+  + + 
Sbjct: 153 -MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
           GI    +++ + ++         + +  +++LE L +           +L  LT+L  L+
Sbjct: 61  GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 499 LNGNTLSGRVPAALGG 514
           ++ +     +   +  
Sbjct: 119 ISHSAHDDSILTKINT 134

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             + +  L+  L +      +++ ++LSGN +     + L     LE+L+LS N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ET 73

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            + L  L+ LR L+LN N + 
Sbjct: 74  LD-LESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +   +     L++++LS N +   +     + A +  + L  N     I ++L     L 
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 496 RLNLNGNTLSGRVPAALGGRLL 517
             +L GN            +  
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQ 262

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
               +   ++ +S++ A+ S   +  +++ LDLS N  +      L   T L  LNL+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 503 TLSG 506
            L  
Sbjct: 69  VLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 499
           S+ +  ++I L+ N I        G  + ++ LDL  N  +  +  E       L  LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 500 NGNTLS 505
             N + 
Sbjct: 177 QYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGS 483
           + L N  +             +Q ++L  N I          +  +LE L+L YNF    
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   +     L+ L+L+ N L+  +      
Sbjct: 184 VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQS 212

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +     +++++ + N+I   +  S G     + + L+ N          G  + ++ L+L
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 500 NGNTLSGRVPAALGGRL 516
             N +     A L    
Sbjct: 152 KLNEIDTVNFAELAASS 168

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +  L  L++++L+ N +       L    S+E L  + N  +  +  S GQ    + + L
Sbjct: 76  LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYL 127

Query: 500 NGNTLSGRVPAALGG 514
             N ++       G 
Sbjct: 128 ANNKITMLRDLDEGC 142

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 459 AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           AI          ++  ++ +    ++         ++ L+L+GN LS    A L  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501
           K +    ++  G+     +       A    +D     +   I +   +  A   L    
Sbjct: 311 KRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 502 NTLSGRVPAALG 513
             L  +V     
Sbjct: 370 KALDEQVSNGRR 381

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             + +  L+  L +      +++ ++LSGN +     + L     LE+L+LS N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ET 73

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            + L  L+ LR L+LN N + 
Sbjct: 74  LD-LESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +   +     L++++LS N +   +     + A +  + L  N     I ++L     L 
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 496 RLNLNGNTLS 505
             +L GN   
Sbjct: 241 HFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
            +    L+ +NL  N I   +   +   A L+ LDLS N     +         +  ++L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 500 NGNTLSGRVPAALGG 514
             N L   +  AL  
Sbjct: 222 RNNKLV-LIEKALRF 235

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
               +   ++ +S++ A+ S   +  +++ LDLS N  +      L   T L  LNL+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 503 TLS 505
            L 
Sbjct: 69  VLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N  L       ++    L+ +NLS N +       L ++++L  LDL+ N+      + 
Sbjct: 43  GNP-LSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QE 94

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGGRL 516
           L    ++  L+   N +S RV  + G   
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQGK 122

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 499
           S+ +  ++I L+ N I        G  + ++ LDL  N  +  +  E       L  LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 500 NGNTLS 505
             N + 
Sbjct: 177 QYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +     +++++ + N+I   +  S G     + + L+ N          G  + ++ L+L
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 500 NGNTLSGRVPAALGGRL 516
             N +     A L    
Sbjct: 152 KLNEIDTVNFAELAASS 168

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           +N+ +             +Q ++L  N I          +  +LE L+L YNF    +  
Sbjct: 129 NNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG 186

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
            +     L+ L+L+ N L+  +      
Sbjct: 187 QV-VFAKLKTLDLSSNKLA-FMGPEFQS 212

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN-GSIPESLGQLTAL 494
           +         +  I+L  N +   I  +L    +LE  DL  N F+ G++ +   +   +
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 495 RRLNLNGNT 503
           + +      
Sbjct: 265 QTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +  L  L++++L+ N +       L    S+E L  + N  +  +  S GQ    + + L
Sbjct: 76  LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYL 127

Query: 500 NGNTLSGRVPAALGG 514
             N ++       G 
Sbjct: 128 ANNKITMLRDLDEGC 142

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 459 AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           AI          ++  ++ +    ++         ++ L+L+GN LS    A L  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++         L HL ++ L+GN I+     +   ++SL+ L           
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 485 PESLGQLTALRRLNLNGNTL-SGRVPAALGG 514
              +G L  L+ LN+  N + S ++P     
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 17/81 (20%), Positives = 31/81 (38%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    LR            LQ ++LS   I+     +  +++ L  L L+ N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +   L++L++L      L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L + +   R       + L  L+ + ++GNS +          + +L  LDLS       
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
            P +   L++L+ LN+  N L 
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           + +    L  L+ ++   ++++     S   ++ +L  LD+S+     +       L++L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 495 RRLNLNGNTLSGRVPAAL 512
             L + GN+        +
Sbjct: 448 EVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGS 483
           L      L       I  L+ L+ +N++ N I+   +P     + +LE LDLS N     
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 484 IPESLGQLTALR----RLNLNGNTLS 505
               L  L  +      L+L+ N ++
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L +     +      I ++LR+L  ++LS   +    P++  +++SL+VL+++ N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 484 IPESLGQLTALRRLNLNGN 502
                 +LT+L+++ L+ N
Sbjct: 510 PDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
                    +P+ +      ++++LS N +R     S  +   L+VLDLS          
Sbjct: 14  CMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   L+ L  L L GN +      A  G
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSG 98

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIR--GAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L     +G        L  L+ ++LS N +   G    S     SL+ LDLS+N    ++
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +   L  L  L+   + L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEV----LDLSYNFFNGSIPESLGQL 491
           LP   S L +L+ ++LS N I+    + L  +  + +    LDLS N  N  I     + 
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 492 TALRRLNLNGNTLSGRVPAALGGRL 516
             L +L L  N  S  V       L
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGL 224

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--GSIPESLGQLTALRRLNL 499
           KL+ L+ +  + N   G   S +  + SLE LDLS N  +  G   +S    T+L+ L+L
Sbjct: 323 KLKSLKRLTFTSNKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 500 NGNTLS 505
           + N + 
Sbjct: 381 SFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQ----SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           L L +  ++      +  L  +     S++LS N +   I         L  L L  NF 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFD 212

Query: 481 NGSIPE-SLGQLTALRRLNLNGNTLSG 506
           + ++ +  +  L  L    L       
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 435 FLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA 493
            L     + L  LQ +N++ N ++         + SL+ + L  N ++ S P     +  
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR----IDY 539

Query: 494 LRR-LNLNGNTLSGRV 508
           L R LN N     G  
Sbjct: 540 LSRWLNKNSQKEQGSA 555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +   GL   LP+ +    H+ ++ +  N++  ++P+       L  L++S N    S+
Sbjct: 45  LNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SL 96

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAAL 512
           P     L  L   +     L   +P+ L
Sbjct: 97  PVLPPGLLELSIFSNPLTHLP-ALPSGL 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP   S+L+ L    +SGN +  ++P        L  L +  N     +PESL  L++  
Sbjct: 236 LPVLPSELKEL---MVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSET 287

Query: 496 RLNLNGNTLS 505
            +NL GN LS
Sbjct: 288 TVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
                 +N+  + +   +P  L     +  L +  N    S+P    +   LR L ++GN
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 503 TLSGRVPAALGG 514
            L+  +P    G
Sbjct: 92  QLT-SLPVLPPG 102

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP   S+L  L       N +  ++P        L+ L +S N    S+P    +L  L 
Sbjct: 156 LPALPSELCKL---WAYNNQLT-SLPMLPS---GLQELSVSDNQLA-SLPTLPSELYKLW 207

Query: 496 RLNLNGNTL 504
             N    +L
Sbjct: 208 AYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP   S+L  L       N +  ++P+       L+ L +S N    S+P    +L    
Sbjct: 196 LPTLPSELYKL---WAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPSELK--- 244

Query: 496 RLNLNGNTLSGRVPAALGG 514
            L ++GN L+  +P    G
Sbjct: 245 ELMVSGNRLT-SLPMLPSG 262

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 20/93 (21%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGT--------------IASLEVLDLSYNFFN 481
           LP     L  L   +     +  A+PS L                   L+ L +S N   
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 154

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            S+P    +L    +L    N L+  +P    G
Sbjct: 155 -SLPALPSELC---KLWAYNNQLT-SLPMLPSG 182

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L    L   + +   K++ L+ + +S N +  A+      I +L+VLDLS+N     +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +  Q   L  L L+ N++ 
Sbjct: 317 ERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           V   + +D Q    +       L + + +    +++R    + L +   +E+L+L+    
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 481 NGSIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
              I   +      +++L +  N +   +P  +   +
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV 122

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           +   N  +R      +   R ++ +NL+   I      +     +++ L + +N     +
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YL 114

Query: 485 PESLGQ-LTALRRLNLNGNTLS 505
           P  + Q +  L  L L  N LS
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           L      +  L+ ++LS N +   +  +      LE L L +N    ++   L     L+
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLK 348

Query: 496 RLNLNGNTLS 505
            L L+ N   
Sbjct: 349 NLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 8e-08
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
              +     L  ++LS N +   +      +  LE L +S N    ++      +  L+ 
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 497 LNLNGNTLSGRVPAALGG 514
           L+L+ N L   V      
Sbjct: 306 LDLSHNHLL-HVERNQPQ 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-LTA 493
           LP  +   +  L  + L  N +             L  L +S N     I +   Q  T+
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTS 172

Query: 494 LRRLNLNGNTLS 505
           L+ L L+ N L+
Sbjct: 173 LQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           LP GI      L ++++S N++      +     SL+ L LS N     +   L  + +L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 194

Query: 495 RRLNLNGNTLS 505
              N++ N LS
Sbjct: 195 FHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L     +       LQ++ LS N +   +   L  I SL   ++SYN      
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL---- 204

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +L    A+  L+ + N+++
Sbjct: 205 -STLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S +  L   N+S N +     S+L    ++E LD S+N  N  +   +     L  L L
Sbjct: 188 LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKL 239

Query: 500 NGNTLS 505
             N L+
Sbjct: 240 QHNNLT 245

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 7/72 (9%), Positives = 23/72 (31%), Gaps = 2/72 (2%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTA 493
            + + +        +++   +          T+ + +++    +     +P   L     
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 494 LRRLNLNGNTLS 505
           +  LNLN   + 
Sbjct: 77  VELLNLNDLQIE 88

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L  D  G++    +G+  L +L  IN S N +    P  L  +  L  + ++ N      
Sbjct: 51  LQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  LT L  L L  N ++ 
Sbjct: 107 P--LANLTNLTGLTLFNNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +    P  +S L  LQ +    N +     SSL  + ++  L   +N  +   
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  LT + +L LN    + 
Sbjct: 370 P--LANLTRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   L    P  IS L++L  + L  N+I    P  + ++  L+ L    N  +   
Sbjct: 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-- 345

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
             SL  LT +  L+   N +S 
Sbjct: 346 VSSLANLTNINWLSAGHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
              ++ L +L  ++L+ N I    P  L  +  L  L L  N  +   P  L  LTAL  
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 497 LNLNGNTLSG 506
           L LN N L  
Sbjct: 292 LELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + +  +     + ++KL +L+S+  + N I    P  LG + +L+ L L+ N      
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-- 235

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
             +L  LT L  L+L  N +S 
Sbjct: 236 IGTLASLTNLTDLDLANNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           +   N  L    P  +  L  L  I ++ N I    P  L  + +L  L L  N      
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  LT L RL L+ NT+S 
Sbjct: 129 P--LKNLTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  L ++ L+ N +     S +  + +L  L L +N  +   P  +  LT L+RL 
Sbjct: 282 PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 499 LNGNTLSG 506
              N +S 
Sbjct: 338 FYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +    P  +S L  L  + L  N I     S L  + +L  L+L+ N      
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDIS 303

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  +  L  L  L L  N +S 
Sbjct: 304 P--ISNLKNLTYLTLYFNNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             L    +   +    + L  + ++      I+      +  + +L  ++ S N      
Sbjct: 29  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  LT L  + +N N ++ 
Sbjct: 85  P--LKNLTKLVDILMNNNQIAD 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
             + L       L   ++   +      +  +  L            + +  L  L ++N
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQIN 74

Query: 499 LNGNTLSG 506
            + N L+ 
Sbjct: 75  FSNNQLTD 82

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +  L +L  + LS N+I     S+L  + SL+ L         +  + L  LT L RL++
Sbjct: 130 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDI 184

Query: 500 NGNTLSG 506
           + N +S 
Sbjct: 185 SSNKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  +     + +S L  LQ ++   N +    P  L  + +LE LD+S N    S 
Sbjct: 139 LELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKV--SD 191

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
              L +LT L  L    N +S 
Sbjct: 192 ISVLAKLTNLESLIATNNQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
            + ++ L ++  ++   N I    P  L  +  +  L L+   +  +       ++    
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 497 L-NLNGNTLS 505
           + N+ G  ++
Sbjct: 404 VKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L   +  +    P  ++ L  +  + L+  +   A  +      ++ + +   N     I
Sbjct: 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA---NVSIPNTVKNVTGALI 412

Query: 485 -PESLGQLTALRRLNLNGNTLS 505
            P ++    +    ++  N  S
Sbjct: 413 APATISDGGSYTEPDITWNLPS 434

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP  +     L+ I++  NS++  +P       SLE +    N     +PE L  L  L 
Sbjct: 146 LPE-LQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPE-LQNLPFLT 198

Query: 496 RLNLNGNTLS 505
            +  + N+L 
Sbjct: 199 AIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L      L   LP     L+ L   N +  ++    P        LE L +S N     +
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KL 146

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           PE L   + L+ ++++ N+L  ++P    
Sbjct: 147 PE-LQNSSFLKIIDVDNNSLK-KLPDLPP 173

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 8/78 (10%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP  +  L  L +I    NS++  +P       SLE +    N         L  L  L 
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNIL--EELPELQNLPFLT 240

Query: 496 RLNLNGNTLSGRVPAALG 513
            +  + N L   +P    
Sbjct: 241 TIYADNNLLK-TLPDLPP 257

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 19/101 (18%)

Query: 425 LGLDNQGLRGFLPNGISKLR-------------HLQSINLSGNSIRGAIPSSLGTIASLE 471
                       P G  + R                 + L+   +  ++P        LE
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP---HLE 94

Query: 472 VLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
            L  S N     +PE    L +L   N N   LS  +P  L
Sbjct: 95  SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD-LPPLL 133

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
              +  L  L +I    N ++  +P       SLE L++  N+    +PE    LT L  
Sbjct: 230 LPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDV 284

Query: 497 LNLNGNTLSGRVP 509
                + LS   P
Sbjct: 285 SENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 7e-08
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 25/94 (26%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT--- 492
           LP    +L  L     S N +   +P       +L+ L + YN      P+    +    
Sbjct: 332 LPALPPRLERL---IASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLR 383

Query: 493 -------------ALRRLNLNGNTLSGRVPAALG 513
                         L++L++  N L    P    
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE 416

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           L      L +L   N S N IR ++        SLE L++S N     +P    +L    
Sbjct: 292 LSELPPNLYYL---NASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRLE--- 340

Query: 496 RLNLNGNTLSGRVPAALG 513
           RL  + N L+  VP    
Sbjct: 341 RLIASFNHLA-EVPELPQ 357

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 15/92 (16%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA- 493
           F+         LQ      +++   +P     + S      +++ +  + P   G+    
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 494 ------------LRRLNLNGNTLSGRVPAALG 513
                          L LN   LS  +P    
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELPP 91

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 9/81 (11%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +++      +P     L+ L   ++  N +R   P       S+E L ++        
Sbjct: 382 LRMNSH--LAEVPELPQNLKQL---HVETNPLR-EFPDIPE---SVEDLRMNSERVVDPY 432

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +      L       +   
Sbjct: 433 EFAHETTDKLEDDVFEHHHHH 453

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L    L   + +   K++ L+ + +S N +  A+      I +L+VLDLS+N     +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 310

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +  Q   L  L L+ N++ 
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           +   N  +R      +   R ++ +NL+   I      +     +++ L + +N     +
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YL 108

Query: 485 PESLGQ-LTALRRLNLNGNTLSGRVPAALGGRL 516
           P  + Q +  L  L L  N LS  +P  +    
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 11/85 (12%), Positives = 32/85 (37%)

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           V   + +D Q    +       L + + +    +++R    + L +   +E+L+L+    
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 481 NGSIPESLGQLTALRRLNLNGNTLS 505
                 +      +++L +  N + 
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           L      +  L+ ++LS N +   +  +      LE L L +N    ++   L     L+
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLK 342

Query: 496 RLNLNGNTLS 505
            L L+ N   
Sbjct: 343 NLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +     L  ++LS N +   +      +  LE L +S N    ++      +  L+ L+L
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 500 NGNTLSGRVPAALGG 514
           + N L   V      
Sbjct: 303 SHNHLL-HVERNQPQ 316

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +R   P+    +  L  + L  N +             L  L +S N     I
Sbjct: 98  LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RI 156

Query: 485 PESLGQ-LTALRRLNLNGNTLS 505
            +   Q  T+L+ L L+ N L+
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L     +       LQ++ LS N +   +   L  I SL   ++SYN      
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL---- 198

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +L    A+  L+ + N+++
Sbjct: 199 -STLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++    ++ ++ S NSI   +         L +L L +N         L     L  ++L
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDL 255

Query: 500 NGNTLS 505
           + N L 
Sbjct: 256 SYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 6/71 (8%), Positives = 21/71 (29%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
            + + +        +++   +          T+ + +++    +         L     +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 495 RRLNLNGNTLS 505
             LNLN   + 
Sbjct: 72  ELLNLNDLQIE 82

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE----VLDLSYNFFNGSIPESLGQL 491
           LP     L  L   ++S N +  ++P+        E          N     IPE++  L
Sbjct: 175 LPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL 229

Query: 492 TALRRLNLNGNTLSGRVPAALG 513
                + L  N LS R+  +L 
Sbjct: 230 DPTCTIILEDNPLSSRIRESLS 251

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   L   LP+ +     +  + ++ N++  ++P       SLE LD   N  + ++
Sbjct: 64  LQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TL 115

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           PE       L+ L+++ N L+  +P     
Sbjct: 116 PELPAS---LKHLDVDNNQLT-MLPELPAL 141

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
            G +       L      +     + L+  ++  ++P +L     + VL+++ N    S+
Sbjct: 42  PGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL-ISL 95

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           PE    L     L+   N LS  +P    
Sbjct: 96  PELPASLE---YLDACDNRLS-TLPELPA 120

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP   + L+HL   ++  N +   +P      A LE ++   N     +PE       L 
Sbjct: 115 LPELPASLKHL---DVDNNQLT-MLPEL---PALLEYINADNNQLT-MLPELPTS---LE 163

Query: 496 RLNLNGNTLSGRVPAALG 513
            L++  N L+  +P    
Sbjct: 164 VLSVRNNQLT-FLPELPE 180

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQS----INLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           L +    L   LP    +  H +          N I   IP ++ ++     + L  N  
Sbjct: 185 LDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 481 NGSIPESLGQLTALRRLNLNGNTLS 505
           +  I ESL Q TA    +      S
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFS 267

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 4e-10
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 15/161 (9%)

Query: 345 TLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQH 404
            L P+     +   + +  +  +      E ++    LK  +D P R  +  D       
Sbjct: 376 ELEPENKWCLLTIILLMRALDPLLY--EKETLQYFSTLKA-VD-PMRAAYLDDLRSKFLL 431

Query: 405 PWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL 464
             S    ++           L L ++ L   +   + +L  +  ++LS N +R A+P +L
Sbjct: 432 ENSVLKMEYADVRV------LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPAL 482

Query: 465 GTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
             +  LEVL  S N    ++   +  L  L+ L L  N L 
Sbjct: 483 AALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 7e-09
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-S 483
           L L +  LR  LP  ++ LR L+ +  S N++   +   +  +  L+ L L  N     +
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSA 524

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
             + L     L  LNL GN+L 
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC 546

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 432 LRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ 490
           LR             L S+NLS   ++  +P  L     L VLDLSYN  +   P S  +
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLD-RNP-SPDE 294

Query: 491 LTALRRLNLNGNTLSG 506
           L  +  L+L GN    
Sbjct: 295 LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-LTA 493
             P     L+ L   N    +  G   +       L+ LDLS+N    +         + 
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 494 LRRLNLNGNTLSGRVPAALGGRL 516
           L  LNL+   L  +VP  L  +L
Sbjct: 255 LNSLNLSFTGLK-QVPKGLPAKL 276

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 5/84 (5%)

Query: 427 LDNQGLRGFLPNGISKL-RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
           +       +L      L   L+ ++++           +    +L  LDLS N   G   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 486 ES----LGQLTALRRLNLNGNTLS 505
                   +   L+ L L    + 
Sbjct: 191 LISALCPLKFPTLQVLALRNAGME 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRH--LQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSY 477
           L L+N  + G  P  + +     L  +NL   S      + L  +       L+VL ++ 
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQ 158

Query: 478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509
                   E +    AL  L+L+ N   G   
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 425 LGL-DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L + + +          + L  L  + +   S+R     SL +I  +  L L  +     
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 484 IPESLGQLTALRRLNLNGNTLSG 506
           +      L+++R L L    L+ 
Sbjct: 188 LEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           I  L +    L   L    S L  ++ I +  + +     S    + SLE LDLS N   
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 482 GSIPES---LGQLTALRRLNLNGNTLS 505
               ++    G   +L+ L L+ N L 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA---SLEVLDLSYN 478
           +    L N   +G  P+       LQ++ LS N +R ++  +   +    +L  LD+S N
Sbjct: 346 MVEEYLKNSACKGAWPS-------LQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRN 397

Query: 479 FFNGSIPESLGQLTALRRLNLNGNTLS 505
            F+  +P+S      +R LNL+   + 
Sbjct: 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +       +    +LQ + L  + I      +  ++ SLE LDLS N  +   
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90

Query: 485 PESLGQLTALRRLNLNGNTLS 505
               G L++L+ LNL GN   
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  +     +    L  L+ ++LS N +     S  G ++SL+ L+L  N +  ++
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TL 113

Query: 485 PES--LGQLTALRRLNLNGNTLSGRVPA 510
             +     LT L+ L +        +  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRR 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +P+       ++ +NLS   IR  + + +    +LEVLD+S N  + S       L  L+
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNLD-SFSLF---LPRLQ 454

Query: 496 RLNLNGNTLS 505
            L ++ N L 
Sbjct: 455 ELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
             ++     +P+G++    ++S++LS N I       L   A+L+VL L  +  N    +
Sbjct: 12  GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 487 SLGQLTALRRLNLNGNTLS 505
           +   L +L  L+L+ N LS
Sbjct: 69  AFYSLGSLEHLDLSDNHLS 87

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 425 LGLDNQGLRGFLPNG-ISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNG 482
           L L     +          L +LQ++ +        I       + SL  L++       
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 483 SIPESLGQLTALRRLNLNGNTLS 505
              +SL  +  +  L L+ +  +
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L       + +L+ L    +S N ++  +P +      L V+ +S N      
Sbjct: 436 LDVSNNNLD-SFSLFLPRLQEL---YISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVP 489

Query: 485 PESLGQLTALRRLNLNGN 502
                +LT+L+++ L+ N
Sbjct: 490 DGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 425 LGLDNQGLRGFLPNGISKLRH--------LQSINLSGNSIRGAIPSSLGTIASLEVLDLS 476
                 GL  F P+    +          ++ +++    +   + +    +  ++ + + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 477 YNFFNGSIPESLGQ-LTALRRLNLNGNTLS 505
            +     +P S  Q L +L  L+L+ N + 
Sbjct: 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 10/81 (12%), Positives = 23/81 (28%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    LR +    +  +R +  + L  +     +      ++S+  L+L         
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 485 PESLGQLTALRRLNLNGNTLS 505
              L        +       S
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGS 233

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  +          L+ L+ +NL+ N I      +   + +L+VL+LSYN      
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +   L  +  ++L  N ++
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIA-----SLEVLDLSYN 478
           L L+         +   S+   L+ + L  N ++ A  + L          L+VL L++N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
           + N   P     LTALR L+LN N L+      L   L  
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI 530

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L L +Q     +       L +L+ ++L  + I    P +   +  L  L L +   + +
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 484 I--PESLGQLTALRRLNLNGNTLS 505
           +        L AL RL+L+ N + 
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIR 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 19/81 (23%), Positives = 32/81 (39%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +          L +LQ +NLS N +     S+   +  +  +DL  N      
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            ++   L  L+ L+L  N L+
Sbjct: 355 DQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 425 LGLDNQGLRGFL--PNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFN 481
           L L   GL   +        L+ L  ++LS N IR   +  S G + SL+ +D S N   
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 482 GSIPESLGQLTA--LRRLNLNGNTLSGRVPAAL 512
                 L  L    L   +L  N+L  RV    
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYNFFNGS 483
           L L    +R    +    L  LQ + L        I   +   + +L +LDL  +     
Sbjct: 29  LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
            P++   L  L  L L    LS
Sbjct: 89  HPDAFQGLFHLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNLNG 501
           L   + + LS N IR    SS   +  L++L+L   +   +I  E+   L  LR L+L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 502 NTLS 505
           + + 
Sbjct: 83  SKIY 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           +    L          +    L HLQ + L+ N +    P     + +L  L L+ N   
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Query: 482 GSIPESLGQLTALRRLNLNGNTLS 505
             +  +      L  L+++ N L 
Sbjct: 518 -VLSHND-LPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           L  +  I+L  N I      +   +  L+ LDL  N        ++  + ++  + L+GN
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGN 391

Query: 503 TLSGRVPAALGGRLLH 518
            L       L   L+H
Sbjct: 392 KLVTLPKINLTANLIH 407

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRH--LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479
           I G G     ++    N  + L    ++ ++LS   +         T+  L+VL+L+YN 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 480 FNGSIPESLGQLTALRRLNLNGNTLS 505
            N    E+   L  L+ LNL+ N L 
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSI-----PESLGQLTA 493
           + ++ HLQ + L+ N               SLE L L  N    +       +    L+ 
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 494 LRRLNLNGNTLS 505
           L+ L LN N L+
Sbjct: 482 LQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 447 QSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSG 506
           +       ++   +P  L    + E L LS+N+       S   L  L+ L L       
Sbjct: 7   RIAFYRFCNLT-QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 507 RVP 509
            + 
Sbjct: 63  TID 65

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L++  L    P   S L  L+ ++L+ N +     + L    +LE+LD+S N    + 
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLL-AP 541

Query: 485 PESLGQLTALRRLNLNGNTLS 505
                   +L  L++  N   
Sbjct: 542 NPD--VFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 446 LQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLNLNGNT 503
              I+LS N +    I   L  +  L++L L+ N F+    +    +  +L +L L  N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 504 LSGRVPAALGGRLL 517
           L       L   + 
Sbjct: 463 LQLAWETELCWDVF 476

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 21/78 (26%), Positives = 42/78 (53%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N     FLP+  ++LR+L  ++LS   +    P++  +++SL+VL++S+N F       
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 488 LGQLTALRRLNLNGNTLS 505
              L +L+ L+ + N + 
Sbjct: 219 YKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSI--RGAIPSSLGTIASLEVLDLSYNFFNG 482
           L L++  L+        KL  L  ++LS N +  +G    S     SL+ LDLS+N    
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 91

Query: 483 SIPESLGQLTALRRLNLNGNTLS 505
           ++  +   L  L  L+   + L 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L   +  L+      +   LR+L  +++S    R A       ++SLEVL ++ N F  +
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 484 IPE-SLGQLTALRRLNLNGNTLS 505
                  +L  L  L+L+   L 
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF--FNGSI 484
            +++GL   +P GI        + L  N ++         +  L  L LS N   F G  
Sbjct: 14  CNSKGLTS-VPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            +S    T+L+ L+L+ N +   + +   G
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 99

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 12/78 (15%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           + +    L  L+ ++   ++++     S+  ++ +L  LD+S+     +       L++L
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 495 RRLNLNGNTLSGRVPAAL 512
             L + GN+        +
Sbjct: 153 EVLKMAGNSFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L    P   + L  LQ +N+S N+           + SL+VLD S N    + 
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TS 238

Query: 485 PESL--GQLTALRRLNLNGN 502
            +       ++L  LNL  N
Sbjct: 239 KKQELQHFPSSLAFLNLTQN 258

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRL 497
            + KL  L+ + LS N + G +        +L  L+LS N     S  E L +L  L+ L
Sbjct: 59  NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118

Query: 498 NLNGN 502
           +L   
Sbjct: 119 DLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 425 LGLDNQGL-RGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L LDN     G L     +   L+ ++     +  +I ++L  +  L+ L+LS N  +G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
           +     +   L  LNL+GN + 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIK 101

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           LGL    +       ++   HL+ ++L+ N +   +P  L     ++V+ L  N  + +I
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AI 278

Query: 485 PES-------LGQLTALRRLNLNGNTLS 505
             +         +  +   ++L  N + 
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L LD   +       +  L +L  + LS NSI      SL     L  L L+ N     +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P  L     ++ + L+ N +S
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 395 NGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN 454
              P VP+  P  G  C F    H  V+      + GL   +P  +        ++L  N
Sbjct: 10  EHFPEVPEIEPM-GPVCPFRCQCHLRVVQ---CSDLGLEK-VPKDLPP--DTALLDLQNN 62

Query: 455 SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
            I          + +L  L L  N  +   P +   L  L RL L+ N L   +P  +
Sbjct: 63  KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG------AIPSSLGTIASLEVLDLSYN 478
           L L+N  L   +P G++  +++Q + L  N+I          P      AS   + L  N
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 479 FFN-GSIPESL-GQLTALRRLNLNGN 502
                 I  S    +     + L   
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +          L++L ++ L  N I    P +   +  LE L LS N     +
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           PE +     L+ L ++ N ++
Sbjct: 116 PEKM--PKTLQELRVHENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGSIPE-SLGQLTA 493
           LP  +   + LQ + +  N I     S    +  + V++L  N   +  I   +   +  
Sbjct: 115 LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 494 LRRLNLNGNTLSGRVPAAL 512
           L  + +    ++  +P  L
Sbjct: 173 LSYIRIADTNIT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAI--PSSLGTIASLEVLDLSYNFFNGSIPESLGQLT 492
           +   + + L  +  + L  N ++ +     +   +  L  + ++      +IP+ L    
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PP 192

Query: 493 ALRRLNLNGNTLS 505
           +L  L+L+GN ++
Sbjct: 193 SLTELHLDGNKIT 205

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L +    +      G  S  + L S+N+S N +   I   L     ++VLDL  N    S
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK-S 435

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVP 509
           IP+ + +L AL+ LN+  N L   VP
Sbjct: 436 IPKQVVKLEALQELNVASNQLK-SVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +     + I  L  L+ + +S N I+    S       LE LDLS+N     I
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI 84

Query: 485 PESLGQLTALRRLNLNGNTLS 505
                    L+ L+L+ N   
Sbjct: 85  S--CHPTVNLKHLDLSFNAFD 103

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA---SLEVLDLSYNFFN 481
           L   N  L   +      L  L+++ L  N ++  +           SL+ LD+S N  +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 482 GSIPESL-GQLTALRRLNLNGNTLSGRVPAALGGRL 516
               +       +L  LN++ N L+  +   L  R+
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +P  +S  +    +N+S N I     S + +++ L +L +S+N               L 
Sbjct: 15  VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 496 RLNLNGNTLS 505
            L+L+ N L 
Sbjct: 73  YLDLSHNKLV 82

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
             + +     F  + I     ++   N + +  R         I+    LD S N    +
Sbjct: 281 HQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
           + E+ G LT L  L L  N L 
Sbjct: 340 VFENCGHLTELETLILQMNQLK 361

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L LD+  ++      + +   L  + L  N IR     SL  + +L  L L  N  +  +
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P  L  L  L+ + L+ N ++
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +        S LR LQ + +S N +   IP      +SL  L +  N     +
Sbjct: 83  LVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KV 138

Query: 485 PE-SLGQLTALRRLNLNGNTLS 505
           P+     L  +  + + GN L 
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L +    L G +P  +     L  ++L  N I+ AI    L   + L  L L +N     
Sbjct: 177 LRISEAKLTG-IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-M 231

Query: 484 IPE-SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           I   SL  L  LR L+L+ N LS RVPA L  
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
            +    L+HL ++ L  N I      +   +  L+ L +S N     IP +L   ++L  
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVE 127

Query: 497 LNLNGNTLS 505
           L ++ N + 
Sbjct: 128 LRIHDNRIR 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGS 483
           L + +  +R       S LR++  I + GN +              L  L +S       
Sbjct: 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-G 186

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
           IP+ L     L  L+L+ N + 
Sbjct: 187 IPKDL--PETLNELHLDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLNGNT 503
           HL+ +  S   ++ A+P  +       +LDL  N  +  + +     L  L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 504 LS 505
           +S
Sbjct: 90  IS 91

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGSIPESLGQLTAL 494
           +P  +     L  + +  N IR         + ++  +++  N   N            L
Sbjct: 117 IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 495 RRLNLNGNTLSGRVPAAL 512
             L ++   L+  +P  L
Sbjct: 175 NYLRISEAKLT-GIPKDL 191

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--GSIPESLGQLTALRR 496
            + KL  L+ + LS N I G +      + +L  L+LS N      ++ E L +L  L+ 
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKS 124

Query: 497 LNLNGN 502
           L+L   
Sbjct: 125 LDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 425 LGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L LDN     G +    ++  +L+ ++L    +     S+L  +  L+ L+LS N   G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
           +     +L  L  LNL+GN L 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--GSIPESLGQLTALRR 496
           G   LR L+++ ++ N I          +  L  L L+ N     G + + L  L +L  
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTY 117

Query: 497 LNLNGN 502
           L +  N
Sbjct: 118 LCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 432 LRGFLPNGISK-------LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           LRG     I         L    +I+ S N IR  +      +  L+ L ++ N     I
Sbjct: 26  LRG---YKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRIC-RI 79

Query: 485 PESLGQ-LTALRRLNLNGNTLS 505
            E L Q L  L  L L  N+L 
Sbjct: 80  GEGLDQALPDLTELILTNNSLV 101

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTA 493
           +P G+ + L +L  +++S N I   +      + +L+ L++  N     I   +   L +
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNS 153

Query: 494 LRRLNLNGNTLS 505
           L +L L    L+
Sbjct: 154 LEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
              +     +P GI      + ++L  N I+        +   LE L+L+ N  +   P 
Sbjct: 18  CHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74

Query: 487 SLGQLTALRRLNLNGNTLS 505
           +   L  LR L L  N L 
Sbjct: 75  AFNNLFNLRTLGLRSNRLK 93

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 22/81 (27%), Positives = 35/81 (43%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + +  L       +  L +L+ +NLS N I     S L  +  L+ + L         
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P +   L  LR LN++GN L+
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++    +  +   HL+ + L+ N +    P +   + +L  L L  N     I
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95

Query: 485 P-ESLGQLTALRRLNLNGNTLS 505
           P      L+ L +L+++ N + 
Sbjct: 96  PLGVFTGLSNLTKLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   L       +S L  L  + L   +I      S   +  L+VL++S+  +  ++
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPA 510
             +      L  L++    L+  VP 
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L + +      +        +L S++++  ++  A+P  ++  +  L  L+LSYN  + +
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-T 262

Query: 484 IPE-SLGQLTALRRLNLNGNTLS 505
           I    L +L  L+ + L G  L+
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +     + + +L  LQ I L G  +    P +   +  L VL++S N    ++
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TL 311

Query: 485 PESL-GQLTALRRLNLNGNTLS 505
            ES+   +  L  L L+ N L+
Sbjct: 312 EESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +   L      L +L+S+ +  N +      +   + SLE L L       SI
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SI 167

Query: 485 P-ESLGQLTALRRLNLNGNTLS 505
           P E+L  L  L  L L    ++
Sbjct: 168 PTEALSHLHGLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L + +  L        S L  L+ + L   ++  +IP+ +L  +  L VL L +   N  
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAAL 512
              S  +L  L+ L ++       +    
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 447 QSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
           +++         A+P  + T     +LDL  N       +       L  L LN N +S
Sbjct: 14  RAVLCHRKRFV-AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            +S + +L+ ++L  N I+  I +      +LE L +SYN    S+   + +L  LR L 
Sbjct: 65  SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLY 121

Query: 499 LNGNTLS 505
           ++ N ++
Sbjct: 122 MSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 438 NGISKL-------RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--GSIPESL 488
           N I K+         L+ + +S N I  ++ S +  + +L VL +S N     G I + L
Sbjct: 80  NLIKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEI-DKL 136

Query: 489 GQLTALRRLNLNGN 502
             L  L  L L GN
Sbjct: 137 AALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L      +   +   +S L+  + + LS N+I   I SSL  + +L +L L  N     I
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 485 PESLGQLTALRRLNLNGNTLS 505
                    L  L ++ N ++
Sbjct: 86  ENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 448 SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
            ++     I   + ++L T+ + + L LS N     I  SL  +  LR L+L  N + 
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNNI-EKI-SSLSGMENLRILSLGRNLIK 83

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 3e-07
 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGT---IASLEVLDLSYNFFNGS----IPESLGQLTA 493
            +  +L+ + +     +  +         +  LE +D+S           + + + ++  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 494 LRRLNLNGNTLSGRVPAALGGRL 516
           L+ +N+  N LS  +   L   L
Sbjct: 309 LKFINMKYNYLSDEMKKELQKSL 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L   N  +      GI KL  L  +  + N+I     S      +L  L    N    ++
Sbjct: 47  LDCHNSSITDM--TGIEKLTGLTKLICTSNNITTLDLSQN---TNLTYLACDSNKLT-NL 100

Query: 485 PESLGQLTALRRLNLNGNTLS 505
              +  LT L  LN + N L+
Sbjct: 101 D--VTPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
              + Q           +L  L S++   +SI     + +  +  L  L  + N    ++
Sbjct: 26  AAFEMQAT---DTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TL 79

Query: 485 PESLGQLTALRRLNLNGNTLS 505
              L Q T L  L  + N L+
Sbjct: 80  D--LSQNTNLTYLACDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S+ + L  +N   N+I   +   L     L  LD S N     I   +  LT L   + 
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDC 240

Query: 500 NGNTLS 505
           + N L+
Sbjct: 241 SVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S+  +L  +    N +   +   +  +  L  L+   N     +  S  Q   L  LN 
Sbjct: 81  LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNC 134

Query: 500 NGNTLS 505
             NTL+
Sbjct: 135 ARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 6/79 (7%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
              +G R      ++    L  ++     I   +   L     L  L L+       +  
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD- 334

Query: 487 SLGQLTALRRLNLNGNTLS 505
            +   T L+ L+     + 
Sbjct: 335 -VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S+   L  + L+   +   +   +     L+ L              +G++ AL     
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFE 368

Query: 500 NGNTLS 505
                 
Sbjct: 369 AEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           LD    +      ++    L +++ S N I       +     L  L+   N     +  
Sbjct: 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD- 207

Query: 487 SLGQLTALRRLNLNGNTLS 505
            L Q   L  L+ + N L+
Sbjct: 208 -LNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +++   L  ++ S N +   I   +  +  L   D S N     +  S   L+ L  L+ 
Sbjct: 208 LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHC 261

Query: 500 NGNTLS 505
               L 
Sbjct: 262 IQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S    L  ++   N     +   +     L  LD S+N     +   + Q   L RLN 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNC 198

Query: 500 NGNTLS 505
           + N ++
Sbjct: 199 DTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++ L  L  +N   N +     S       L  L+ + N     I   +   T L  L+ 
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLDVSQN---PLLTYLNCARNTLT-EID--VSHNTQLTELDC 155

Query: 500 NGNTLS 505
           + N   
Sbjct: 156 HLNKKI 161

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S+   L  +N + N++   I   +     L  LD   N         +   T L  L+ 
Sbjct: 123 VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDC 177

Query: 500 NGNTLS 505
           + N ++
Sbjct: 178 SFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
             S   +   ++     S   +A+L  LD   +     +   + +LT L +L    N ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNIT 77

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 6/65 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++ L  L   + S N +   +  S  T++ L  L          I   L   T L     
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQA 282

Query: 500 NGNTL 504
            G   
Sbjct: 283 EGCRK 287

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++    L      G      +  +  T   L +LD         +   L Q   L  L L
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNT--QLYLLDCQAAGIT-ELD--LSQNPKLVYLYL 325

Query: 500 NGNTLS 505
           N   L+
Sbjct: 326 NNTELT 331

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
           G+  L +L  + L  N I     + L  +  +  L+LS N        ++  L +++ L+
Sbjct: 58  GVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGN--PLKNVSAIAGLQSIKTLD 113

Query: 499 LNGNTLS 505
           L    ++
Sbjct: 114 LTSTQIT 120

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
           + I+ L+ +++++L+   I    P  L  +++L+VL L  N    +I   L  LT L+ L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYL 156

Query: 498 NLNGNTLS 505
           ++    +S
Sbjct: 157 SIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  +       ++ L +LQ + L  N I     S L  + +L+ L +     +  +
Sbjct: 112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DL 166

Query: 485 PESLGQLTALRRLNLNGNTLS 505
              L  L+ L  L  + N +S
Sbjct: 167 -TPLANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  L ++    N I     S L ++ +L  + L  N  +  +   L   + L  + 
Sbjct: 168 PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS-DV-SPLANTSNLFIVT 223

Query: 499 LNGNTLS 505
           L   T++
Sbjct: 224 LTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
             + L  + +++  G  +       +  + +L  L+L  N     +   L  LT +  L 
Sbjct: 36  TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELE 91

Query: 499 LNGNTLS 505
           L+GN L 
Sbjct: 92  LSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
               L +   I    +++      +   +  +  L         +I E +  L  L  L 
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLE 69

Query: 499 LNGNTLS 505
           L  N ++
Sbjct: 70  LKDNQIT 76

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L    +           R+L  + L  N +     ++   +A LE LDLS N    S+
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 485 P-ESLGQLTALRRLNLNGNTLS 505
              +   L  L  L+L+   L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L L +  L+  LP+     L +L  + L GN I      +   + SL+ L L  N     
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-H 191

Query: 484 IPE-SLGQLTALRRLNLNGNTLS 505
           +   +   L  L  L L  N LS
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE- 486
             QGL+  +P GI      Q I L GN I     +S     +L +L L  N     I   
Sbjct: 19  PQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAA 74

Query: 487 SLGQLTALRRLNLNGNTLSGRVPA 510
           +   L  L +L+L+ N     V  
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDP 98

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +          L  L  + L  N +    P +   +  L  L L  N  + ++
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-AL 216

Query: 485 PES-LGQLTALRRLNLNGN 502
           P   L  L AL+ L LN N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGS 483
           L L +  L        + L  L+ ++LS N+   ++  +    +  L  L L        
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-E 119

Query: 484 IPE-SLGQLTALRRLNLNGNTLS 505
           +       L AL+ L L  N L 
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ 142

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 438 NGISKLRHLQSINLSGNSIR-----GAIPSSLGTIASLEVLDLSYNFFNG----SIPESL 488
                 R L ++ +  N IR       +   L     L+VLDL  N F      ++  +L
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240

Query: 489 GQLTALRRLNLNGNTLS 505
                LR L LN   LS
Sbjct: 241 KSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 439 GISKLRHLQSINLSGNSI--RGA--IPSSLGTIASLEVLDLSYNFFN----------GSI 484
            + +   ++ I LSGN+I    A  +  ++ +   LE+ + S  F              +
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
            ++L +   L  + L+ N         L 
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 436 LPNGISKLRHLQSINLSGNSIRG----AIPSSLGTIA--SLEVLDLSYNFFNG----SIP 485
           L   +    +L+ + L+   +      A+  +   +    L+ L L YN        ++ 
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 486 ESLGQ-LTALRRLNLNGNTLS 505
             + + +  L  L LNGN  S
Sbjct: 296 TVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 10/90 (11%)

Query: 426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSI--RGA--IPSSLGTIASLEVLDLSYNFFN 481
           G+  +G+   L  G++  + L+ ++L  N+    G+  +  +L +  +L  L L+    +
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 482 G----SIPESLGQL--TALRRLNLNGNTLS 505
                ++ ++  +L    L+ L L  N + 
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 444 RHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFN-----GSIPESLGQLTAL 494
             L+SI    N +          +  +   L  + +  N          + E L     L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 495 RRLNLNGNTLS 505
           + L+L  NT +
Sbjct: 219 KVLDLQDNTFT 229

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 14/81 (17%)

Query: 439 GISKLRHLQSINLSGNSIR----------GAIPSSLGTIASLEVLDLSYNFF--NG--SI 484
            I+  + L+    S                 +  +L     L  + LS N F       +
Sbjct: 55  NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            + L + T L  L L+ N L 
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 17/86 (19%)

Query: 436 LPNGISKLRHLQSINLSGNSI--RGAIP--SSLGTIASLEVLDLSYN------------- 478
           L   + K   L ++ LS N+       P    L     LE L L  N             
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 479 FFNGSIPESLGQLTALRRLNLNGNTL 504
               ++ +       LR +    N L
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRL 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++    N    LRHL+ + LS N IR     +   +A+L  L+L  N    +I
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 485 PE-SLGQLTALRRLNLNGNTLS 505
           P  +   L+ L+ L L  N + 
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500
           + L  L  ++LSGN +    P S   +  L+ L +  +        +   L +L  +NL 
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 501 GNTLS 505
            N L+
Sbjct: 264 HNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L    P     L HLQ + +  + I+    ++   + SL  ++L++N     +
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL 270

Query: 485 PES-LGQLTALRRLNLNGN 502
           P      L  L R++L+ N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  L          L  L+ + L  N I      +   I SL  LDL        I
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 485 PE-SLGQLTALRRLNLNGNTLSGRVPA 510
            E +   L+ LR LNL    L   +P 
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIPN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L L N  +        +++  L+ ++L     +      +   +++L  L+L+       
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           IP +L  L  L  L+L+GN LS   P +  G
Sbjct: 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
              +GL   +P GI    + + +NL  N+I+     +   +  LEVL L  N     I  
Sbjct: 61  CTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEV 116

Query: 487 -SLGQLTALRRLNLNGNTLS 505
            +   L +L  L L  N L+
Sbjct: 117 GAFNGLASLNTLELFDNWLT 136

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 30/65 (46%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500
           + L  L+ + +SGN      P S   ++SL+ L +  +  +     +   L +L  LNL 
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 501 GNTLS 505
            N LS
Sbjct: 275 HNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++    +    L HL+ + L  NSIR     +   +ASL  L+L  N+    I
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VI 138

Query: 485 P-ESLGQLTALRRLNLNGNTLS 505
           P  +   L+ LR L L  N + 
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +         P     L  L+ + +  + +     ++   +ASL  L+L++N  + S+
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281

Query: 485 PES-LGQLTALRRLNLNGN 502
           P      L  L  L+L+ N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  L          L  L+ + L  N I      +   + SL  LDL        I
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 485 PE-SLGQLTALRRLNLNGNTLS 505
            E +   L  L+ LNL    + 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK 209

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 436 LPNGI-SKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA 493
           +P+   +++  L  ++L     +      +   + +L+ L+L        +P +L  L  
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVG 219

Query: 494 LRRLNLNGNTLS 505
           L  L ++GN   
Sbjct: 220 LEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503
                +  +   +   +P  + +  +   L+L  N       ++   L  L  L L  N+
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 504 LS 505
           + 
Sbjct: 111 IR 112

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNG 482
             L    +   L   + S    L+ + L+ N I   I   +   +  L  L+LS NF  G
Sbjct: 280 CDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-G 336

Query: 483 SIPE-SLGQLTALRRLNLNGNTLS 505
           SI       L  L  L+L+ N + 
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNG 482
           L ++ Q     + N     L  L  + L  N     + +     +A+LEVL L+    +G
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDG 117

Query: 483 SI--PESLGQLTALRRLNLNGNTLSGRVPAAL 512
           ++        LT+L  L L  N +    PA+ 
Sbjct: 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           + L    +        S+L+ LQ + +   +    I + +   ++SL +L L YN F   
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQ 93

Query: 484 IPES-LGQLTALRRLNLNGNTLSGRV 508
           +       L  L  L L    L G V
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAV 119

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLNGNT 503
           H+  ++LS NSI     +S   +  L+ L +        I   +   L++L  L L+ N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 504 LS 505
             
Sbjct: 91  FL 92

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTA 493
           + +     L HL  +NLS N +          +  LEVLDLSYN    ++ + S   L  
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPN 372

Query: 494 LRRLNLNGNTLS 505
           L+ L L+ N L 
Sbjct: 373 LKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLNGNT 503
            +++ +LS + I   + S       LE L L+ N  N  I + +   LT L +LNL+ N 
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF 334

Query: 504 LS 505
           L 
Sbjct: 335 LG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 425 LGLDNQGLRG-FLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFN 481
           L L    L G  L       L  L+ + L  N+I+   P+S    +    VLDL++N   
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

Query: 482 GSIPESLGQLTA--LRRLNLNGNTLS 505
               E L          L L+  TL 
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPES-LGQLT 492
           + + +   L  L+ ++LS N IR A+   S   + +L+ L L  N    S+P+    +LT
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLT 395

Query: 493 ALRRLNLNGN 502
           +L+++ L+ N
Sbjct: 396 SLQKIWLHTN 405

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 427 LDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
            +       +     + L  L+ + +  + ++   P SL +I ++  L L        + 
Sbjct: 157 GNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL 214

Query: 486 E-SLGQLTALRRLNLNGNTLSG----RVPAALGGRLLHRASFKYVW 526
           E  +   +++  L L    L       +       L+ + +F+ V 
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIA--------SLEVLDLSYNFFNGSIPE 486
           L          ++ + L    +     S L T          +   + ++       + +
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 487 SLGQLTALRRLNLNGNTLSG 506
            L Q++ L  L  + N L  
Sbjct: 272 LLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L L N  +     + + +  +LQ++ L+ N I   I   S  ++ SLE LDLSYN+   +
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SN 114

Query: 484 IPESL-GQLTALRRLNLNGNTLS 505
           +  S    L++L  LNL GN   
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
             +  L   +P+G+++   ++S++LS N I     S L    +L+ L L+ N  N +I E
Sbjct: 38  GSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEE 93

Query: 487 -SLGQLTALRRLNLNGNTLS 505
            S   L +L  L+L+ N LS
Sbjct: 94  DSFSSLGSLEHLDLSYNYLS 113

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRR 496
           N + K    +++ ++  S+   +   L  I+ L  L+ S N    S+P+    +LT+L++
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305

Query: 497 LNLNGN 502
           + L+ N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-- 482
           L +D   L+ + P  +  ++++  + L        +   +   +S+E L+L     +   
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 483 --SIPE----SLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR 519
              +      SL +    R + +   +L   +        L  
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L++L  + L  N ++  + SSL  +  L+ L L +N  +  I   L  L  L  L 
Sbjct: 85  PLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY 140

Query: 499 LNGNTLS 505
           L  N ++
Sbjct: 141 LGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +       +S+L  L +++L  N I   I   L  +  L+ L LS N  + S 
Sbjct: 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKN--HISD 192

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +L  L  L  L L      
Sbjct: 193 LRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRR 496
           GI  L ++  + L+GN +   I   L  + +L  L L  N     +    SL  L  L+ 
Sbjct: 63  GIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKS 116

Query: 497 LNLNGNTLS 505
           L+L  N +S
Sbjct: 117 LSLEHNGIS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
           NG+  L  L+S+ L  N I     + L  +  L+ L L  N  +  I   L  LT L+ L
Sbjct: 128 NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNL 183

Query: 498 NLNGNTLS 505
            L+ N +S
Sbjct: 184 YLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
                      NL   S+      +   + S++ +  + +    S+ + +  L  + +L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 74

Query: 499 LNGNTLS 505
           LNGN L+
Sbjct: 75  LNGNKLT 81

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
             ++L  +  I  + + I+      +  + ++  L L+ N     I + L  L  L  L 
Sbjct: 41  TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLF 96

Query: 499 LNGNTLS 505
           L+ N + 
Sbjct: 97  LDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  LQ++ LS N I      +L  + +L+VL+L               L     + 
Sbjct: 173 PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 499 LNGNTL 504
               +L
Sbjct: 231 NTDGSL 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRR 496
           GI  L ++  + L+GN +       L  + +L  L L  N     I    SL  L  L+ 
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKS 113

Query: 497 LNLNGNTLS 505
           L+L  N +S
Sbjct: 114 LSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L++L  + L  N I+  + SSL  +  L+ L L +N  +  I   L  L  L  L 
Sbjct: 82  PLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY 137

Query: 499 LNGNTLS 505
           L  N ++
Sbjct: 138 LGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
                      NL   S+  A+      + S++ +  + +    S+ + +  L  + +L 
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 71

Query: 499 LNGNTLS 505
           LNGN L+
Sbjct: 72  LNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
           NG+  L  L+S+ L  N I     + L  +  L+ L L  N  +  I   L  LT L+ L
Sbjct: 125 NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNL 180

Query: 498 NLNGNTLS 505
            L+ N +S
Sbjct: 181 YLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            +S+L  L +++L  N I       L  +  L+ L LS N  + S   +L  L  L  L 
Sbjct: 148 VLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKN--HISDLRALAGLKNLDVLE 203

Query: 499 LNGNTLS 505
           L      
Sbjct: 204 LFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             L  + +   +    ++L  +  I  + + I+ ++   +  + ++  L L+ N     I
Sbjct: 26  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI 80

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            + L  L  L  L L+ N + 
Sbjct: 81  -KPLTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  LQ++ LS N I  +   +L  + +L+VL+L               L     + 
Sbjct: 170 PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 499 LNGNTL 504
               +L
Sbjct: 228 NTDGSL 233

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L  F    +     L  +NL    +   +    GT+  L  LDLS+N    S+
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SL 92

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P     L AL  L+++ N L+
Sbjct: 93  PLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLNL 499
             L  L +++LS N ++ ++P    T+ +L VLD+S+N    S+P      L  L+ L L
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131

Query: 500 NGNTLS 505
            GN L 
Sbjct: 132 KGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNG 482
           L +    L   LP G    L  LQ + L GN ++  +P  L      LE L L+ N    
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT- 161

Query: 483 SIPESL-GQLTALRRLNLNGNTLSGRVPA 510
            +P  L   L  L  L L  N+L   +P 
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFNGS 483
           L L +  L+  LP     L  L  +++S N +  ++P      +  L+ L L  N    +
Sbjct: 82  LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-T 138

Query: 484 IPESL-GQLTALRRLNLNGNTLSGRVPAAL 512
           +P  L      L +L+L  N L+  +PA L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            +  L  L+ ++++ N ++          A L  L L  N       +SL  L  L  L+
Sbjct: 80  PLKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNN--ELRDTDSLIHLKNLEILS 134

Query: 499 LNGNTLS 505
           +  N L 
Sbjct: 135 IRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
               L +    NL   S+      S   ++ ++  +   +    S+   +   T L+ L+
Sbjct: 14  PDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELH 69

Query: 499 LNGNTLS 505
           L+ N +S
Sbjct: 70  LSHNQIS 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
              +L  +Q+ N   ++I+    + +    +L+ L LS+N    S    L  LT L  L+
Sbjct: 36  SQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHN--QISDLSPLKDLTKLEELS 91

Query: 499 LNGNTLS 505
           +N N L 
Sbjct: 92  VNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 438 NGISKLR-----HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT 492
           N +  L       L  + L  N +R     SL  + +LE+L +  N    SI   LG L+
Sbjct: 95  NRLKNLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SI-VMLGFLS 150

Query: 493 ALRRLNLNGNTLS 505
            L  L+L+GN ++
Sbjct: 151 KLEVLDLHGNEIT 163

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 441 SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLN 498
           ++L +L S+ LS N +   I S +   + +L  LDLS N  + ++       L AL  L 
Sbjct: 61  TRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118

Query: 499 LNGNTLS 505
           L  N + 
Sbjct: 119 LYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPE----SLG 489
           L   + S L+ L+ + L  N I   +   +   +A L+ L LS N  +   P        
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160

Query: 490 QLTALRRLNLNGNTLSGRVPAALGG 514
           +L  L  L+L+ N L       L  
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQK 185

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNG 482
           L L +  L  F+ +     + +L+ ++LS N +   +       + +LEVL L  N    
Sbjct: 69  LLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV- 125

Query: 483 SIPE-SLGQLTALRRLNLNGNTLSGRVPA 510
            +   +   +  L++L L+ N +S R P 
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 9/85 (10%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIP----SSLGTIASLEVLDLSYNF 479
           L L N  +   +       +  LQ + LS N I    P         +  L +LDLS N 
Sbjct: 117 LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 480 FNGSIPESLGQLTALRR--LNLNGN 502
                   L +L A  +  L L+ N
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNN 199

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
            + +    +L  + +        +    L  +  L  L +  +      P++      L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 496 RLNLNGNTLSGRVPAALGGRLLHR 519
           RLNL+ N L       + G  L  
Sbjct: 84  RLNLSFNALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 425 LGLD-NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L ++  Q L+      +  L  L+++ +  + +R   P +      L  L+LS+N    S
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 484 IPESLGQLTALRRLNLNGNTL 504
           +     Q  +L+ L L+GN L
Sbjct: 95  LSWKTVQGLSLQELVLSGNPL 115

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 427 LDNQGLRGFLPNGI-----SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           LD       L +       +    +  +NLS N + G++   L     ++VLDL  N   
Sbjct: 408 LDVS--LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM 463

Query: 482 GSIPESLGQLTALRRLNLNGNTL 504
            SIP+ +  L AL+ LN+  N L
Sbjct: 464 -SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES--LGQLT 492
           L   +    + L+ +++S N ++  I      +ASL  LDLS+N F+  +P     G LT
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLT 146

Query: 493 ALRRLNLNGNTLS 505
            L  L L+     
Sbjct: 147 KLTFLGLSAAKFR 159

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--- 481
           L          +  G S L+ LQ++ L  N ++           ++  L+      N   
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 482 -GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
             +   +     ++  LNL+ N L+G V   L  ++
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV 452

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 16/81 (19%), Positives = 26/81 (32%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             + NQ          S    +    LS +           + +S   L+ + N F  S+
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            +    L  L+ L L  N L 
Sbjct: 370 FQGCSTLKRLQTLILQRNGLK 390

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFNG 482
           L L++  L+  LP GI  +L++L+++ ++ N ++ A+P  +   + +L  L L  N    
Sbjct: 66  LYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK- 122

Query: 483 SIPESL-GQLTALRRLNLNGNTLS 505
           S+P  +   LT L  L+L  N L 
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGS 483
           L L +  L         +L  L+ + L+ N ++  +P+ +   + +LE L ++ N    +
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 484 IPESL-GQLTALRRLNLNGNTLS 505
           +P  +  QL  L  L L+ N L 
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK 122

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 444 RHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNG-------SIPESLGQLT 492
            H+ S+NL  N + G     +     ++  L+ + L Y+           ++  +   + 
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 493 ALRRLNLNGNTLS 505
            +  ++ NG  + 
Sbjct: 285 KIILVDKNGKEIH 297

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L L+N         GI  KL  L+ IN S N I      +    + +  + L+ N    +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 484 IPESL-GQLTALRRLNLNGNTLS 505
           +   +   L +L+ L L  N ++
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNG 482
           +   N  +   +  G       +  I L+ N +   +   +   + SL+ L L  N    
Sbjct: 62  INFSNNKITD-IEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT- 118

Query: 483 SIPE-SLGQLTALRRLNLNGNTLSGRVP 509
            +   S   L+++R L+L  N ++  V 
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 428 DNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIP--SSLGTIASLEVLDLSYNFFNGSI 484
           + + L  ++      +L  L+ + +    ++   P  + + +     +L+++ N +  SI
Sbjct: 89  NTRNLT-YIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 485 PESL--GQLTALRRLNLNGNTLS 505
           P +   G       L L  N  +
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNG--ISKLRHLQSINLSGNSIRGAIPSSL--GTIASLEVLDLSYNFF 480
           LG+ N GL+   P+   +        + ++ N    +IP +   G       L L  N F
Sbjct: 110 LGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

Query: 481 NGSIPESLGQLTALRRLNLNGN 502
             S+       T L  + LN N
Sbjct: 169 T-SVQGYAFNGTKLDAVYLNKN 189

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP----SSLGTIASLEVLDLSYNFF 480
           L L    LR    +  S L ++  I +S +     +      +L   + +  +++     
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL---SKVTHIEIRNTRN 92

Query: 481 NGSIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR 519
              I  ++L +L  L+ L +    L    P          
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDI 131

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 445 HLQSINLSGNSIR----GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL-----TALR 495
            +Q ++L    +     G + S+L T+ +L+ L LS N    +  + L +        L 
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 496 RLNLNGNTLSGRVPAALGGRLLH 518
           +L L   +LS      L   L  
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRA 168

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 438 NGISKLRHLQSINLSGNSIR--GAIPSSLGTIA---SLEVLDLSYNFFN----GSIPESL 488
           + +++ R L  + +S N +   G      G       L VL L+    +     S+  +L
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394

Query: 489 GQLTALRRLNLNGNTLS 505
               +LR L+L+ N L 
Sbjct: 395 LANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 13/88 (14%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSI--RGA--IPSSLGTIASLEVLDLSYNFFNG 482
           L +      LP     L+  Q + L    +       I S+L    +L  L+L  N    
Sbjct: 15  LSDARWAELLPL----LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70

Query: 483 SIPESLGQL-----TALRRLNLNGNTLS 505
                + Q        +++L+L    L+
Sbjct: 71  VGVHCVLQGLQTPSCKIQKLSLQNCCLT 98

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 22/102 (21%), Positives = 30/102 (29%), Gaps = 10/102 (9%)

Query: 426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSYNFF 480
            L        L + +      + + +S N I  A    L          LE L L     
Sbjct: 153 SLSAASCE-PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211

Query: 481 N----GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
                  +   +    +LR L L  N L     A L   LLH
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNG 482
           + L N  +   L       LR L S+ L GN I   +P SL   + SL++L L+ N  N 
Sbjct: 61  IDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN- 117

Query: 483 SIPESLGQ-LTALRRLNLNGNTLS 505
            +     Q L  L  L+L  N L 
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           + L+   ++   P   S  + L+ I+LS N I   +   +   + SL  L L  N     
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 484 IPESL-GQLTALRRLNLNGNTLSGRVPA 510
           +P+SL   L +L+ L LN N ++  +  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRV 121

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 436 LPNGI-SKLRHLQSINLSGN---SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQ 490
           + +G    L HL ++ L+GN   S+     S L   +SL+ L         S+     G 
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLA-SLENFPIGH 122

Query: 491 LTALRRLNLNGNTLS 505
           L  L+ LN+  N + 
Sbjct: 123 LKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSIPES--LGQL 491
           L  G  S L  LQ +     ++  ++ +   G + +L+ L++++N    S         L
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNL 148

Query: 492 TALRRLNLNGNTLS 505
           T L  L+L+ N + 
Sbjct: 149 TNLEHLDLSSNKIQ 162

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTAL 494
           +P  +S  +HL  I+LS N I      S   +  L  L LSYN     IP      L +L
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSL 104

Query: 495 RRLNLNGNTLSGRVP 509
           R L+L+GN +S  VP
Sbjct: 105 RLLSLHGNDIS-VVP 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	531
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.93
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.54
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.39
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.28
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.18
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.18
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.16
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.1
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.03
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.03
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.03
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.03
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.03
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.03
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.03
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.02
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.02
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.02
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.01
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.01
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.0
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.0
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.99
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.96
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.93
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.64
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.61
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.56
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.54
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.51
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.5
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.5
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.42
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.4
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.08
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.9
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.66
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.2
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.08
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.88
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.39
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.32
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.42
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.68
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.14
2w3j_A	145	Carbohydrate binding module; sugar-binding protein	86.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	86.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.34
2vzp_A	127	Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS	83.64
2w47_A	144	Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.	82.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	81.93
2wz8_A	156	Cellulosome protein dockerin type I; sugar binding	81.1
2w3j_A	145	Carbohydrate binding module; sugar-binding protein	80.16

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.93  E-value=3.1e-27  Score=217.64  Aligned_cols=154  Identities=19%  Similarity=0.214  Sum_probs=113.8

Q ss_pred             EEEeeecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCccccccccceecCCCCCCCChHHHHHHhhccCCCCCCeEE
Q 009603          193 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQY  272 (531)
Q Consensus       193 ~~~~Rin~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l~~  272 (531)
                      +++|||||||+..   .|    ..  +|.|.+|..+...+... .....+..  ...+.+|..||||||.+..   +++|
T Consensus         5 ~~~~~INcGg~~~---~d----~~--gr~w~~D~~~~~~g~~~-~~~~~~~~--~~~~~~~~~lY~TaR~~~~---~~tY   69 (174)
T 2jwp_A            5 KVIWAVNAGGESH---VD----VH--GIHYRKDPLEGRVGRAS-DYGMKLPI--LRSNPEDQVLYQTERYNED---SFGY   69 (174)
T ss_dssp             HEEEEEEETSSSE---EE----TT--TEEECSSCSSTTCCCCC-CCCTTSCC--SSSCHHHHHTTTCCCCCCS---CEEE
T ss_pred             cEEEEEECCCCCc---cC----CC--CCEEcCCcCcccCCccc-ccccceEe--cccCCCCchhhhhhccCCC---CeEE
Confidence            5789999999753   22    22  68888776432111100 00011111  1123468899999999765   4999


Q ss_pred             EEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeccCCceeeecCCceeeEEEEEEee-------------ecC
Q 009603          273 TMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA-------------VNG  339 (531)
Q Consensus       273 ~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~-------------~~~  339 (531)
                      .|+++++|+|+|||||||+..  .+.++|+|||+|||++++++||+.+++|+ ..++++++.+.             +.+
T Consensus        70 ~f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~~~~l~i~~~~~~~~  146 (174)
T 2jwp_A           70 DIPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKGKLSVQGEVSTFT  146 (174)
T ss_dssp             EEECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEETTEEEETTEEEECC
T ss_pred             EEEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEecCceeeeeeecccC
Confidence            999998899999999999975  45889999999999999999999988876 46777777665             356


Q ss_pred             ceEEEEEccCCCchhhhhhHhhhhh
Q 009603          340 RTLTVTLHPKGGSHAIINAIEVFEI  364 (531)
Q Consensus       340 ~~l~i~~~p~~~~~p~lnalei~~~  364 (531)
                      ++|+|+|.|.....|+||||||++.
T Consensus       147 g~L~I~f~p~~~~~a~inaIEI~~~  171 (174)
T 2jwp_A          147 GKLSVEFVKGYYDNPKVCALFIMKG  171 (174)
T ss_dssp             SEEEEEEECSSSCSSSEEEEEEESS
T ss_pred             CeEEEEEeccCCCCcEEEEEEEEeC
Confidence            7899999987666799999999864

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.87  E-value=1.7e-21  Score=179.23  Aligned_cols=141  Identities=17%  Similarity=0.158  Sum_probs=107.4

Q ss_pred             CcEEEccCCCCCCcCCCCCceeeccCccc-CCccccc------CCC-CCCCCCcceeeccCCCCCCcceEEeeecCCcee
Q 009603           26 FAMRISCGARQNIHSPPTNTLWFKDFAYT-GGIPANA------TRP-SFITPPLKTLRYFPLSEGPENCYIINRVPKGHY   97 (531)
Q Consensus        26 ~~i~IdCG~~~~~~~~~~g~~w~~D~~~~-~~~~~~~------~~~-~~~~~~y~t~R~F~~~~g~~~cY~~~~~~~g~y   97 (531)
                      ..++||||++..  .|..||+|.+|..|. .|.....      ... ..++.+|+|+|+|+.    ..+|.||+.++|+|
T Consensus         6 ~~~~INcGg~~~--~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y   79 (174)
T 2jwp_A            6 VIWAVNAGGESH--VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEY   79 (174)
T ss_dssp             EEEEEEETSSSE--EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEE
T ss_pred             EEEEEECCCCCc--cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEE
Confidence            358999998763  345799999998764 2321111      100 012348999999984    48999999889999


Q ss_pred             EEEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCC-----ccceEEEEEEEe-------------cCCeEEEEEee
Q 009603           98 NVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDH-----DDRAFAEALVFL-------------RDGTVSICFHS  159 (531)
Q Consensus        98 lvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~-----~~~~~~E~~~~~-------------~~~~l~v~f~~  159 (531)
                      +|||||.+..+.. ...+.|||+++|   .+++++|+..     ..++.||+.+.+             .+++|.|+|.|
T Consensus        80 ~VrLhF~ei~~~~-~~~rvFdV~ing---~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p  155 (174)
T 2jwp_A           80 VLVLKFAEVYFAQ-SQQKVFDVRVNG---HTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVK  155 (174)
T ss_dssp             EEEEEEECCSCCC-SSSSCEEEEETT---EEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEEC
T ss_pred             EEEEEEeccccCC-CCCeEeEEEECC---EEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEec
Confidence            9999999997754 467799999999   8899888752     347888888763             56789999998


Q ss_pred             cCCCCCcEEeEEEEEcC
Q 009603          160 TGHGDPAILSLEILQVD  176 (531)
Q Consensus       160 ~~~~~pfIsaiEl~~l~  176 (531)
                      .....||||||||++.+
T Consensus       156 ~~~~~a~inaIEI~~~~  172 (174)
T 2jwp_A          156 GYYDNPKVCALFIMKGT  172 (174)
T ss_dssp             SSSCSSSEEEEEEESSC
T ss_pred             cCCCCcEEEEEEEEeCc
Confidence            65678999999999754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=6.9e-18  Score=169.99  Aligned_cols=150  Identities=26%  Similarity=0.509  Sum_probs=109.7

Q ss_pred             CCchHHHHHHHHHHhhcCCCCC-CCCCC--CCCCCCCCCCCccccccCCCCcceEEEEEEccCCCCcc--cCcccccCCC
Q 009603          370 KTLPEEVRALQVLKNSLDLPHR-FGWNG--DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG--FLPNGISKLR  444 (531)
Q Consensus       370 ~~~~~~~~aL~~~k~~~~~~~~-~~W~~--~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g--~~p~~l~~L~  444 (531)
                      .|.++|++||++||+.+.++.. .+|+.  ++|.   +.|.||.|+...  ...+|+.|+|++|++.|  .+|..+.+++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~l~~l~   76 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLP   76 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCC--CCceEEEEECCCCCccCCcccChhHhCCC
Confidence            4678999999999999976542 47863  4552   359999997432  11358888888888888  7888888888


Q ss_pred             CCCEEEccC-CccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceee
Q 009603          445 HLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFK  523 (531)
Q Consensus       445 ~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~  523 (531)
                      +|+.|+|++ |.+.+.+|..++++++|++|+|++|++++.+|..+.++++|++|+|++|.++|.+|..+.. +.+++.|+
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~  155 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGIT  155 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEE
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEE
Confidence            888888884 7787777777777777777777777777777777777777777777777777666666644 34566666


Q ss_pred             ec
Q 009603          524 YV  525 (531)
Q Consensus       524 l~  525 (531)
                      ++
T Consensus       156 L~  157 (313)
T 1ogq_A          156 FD  157 (313)
T ss_dssp             CC
T ss_pred             Cc
Confidence            55

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=4.4e-17  Score=184.76  Aligned_cols=148  Identities=20%  Similarity=0.313  Sum_probs=125.4

Q ss_pred             CchHHHHHHHHHHhhcCCCCCCCCCCCC----CCCCCCCC------------CccccccCCCCcceEEEEEEccCCCCcc
Q 009603          371 TLPEEVRALQVLKNSLDLPHRFGWNGDP----CVPQQHPW------------SGADCQFDRTSHKWVIDGLGLDNQGLRG  434 (531)
Q Consensus       371 ~~~~~~~aL~~~k~~~~~~~~~~W~~~~----C~~~~~~w------------~gv~C~~~~~~~~~~l~~L~L~~n~l~g  434 (531)
                      +...|+.||++||+++.++   +|+...    +.|+.|.|            .||.|+..     .+|+.|+|+++++.|
T Consensus       266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~G  337 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAKG  337 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCEE
T ss_pred             cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecCC-----CCEEEEECccCCCCC
Confidence            3457999999999999765   786432    22334689            99999742     369999999999999


Q ss_pred             cCcccccCCCCCCEEEc-cCCccCcc------------------------------------------------------
Q 009603          435 FLPNGISKLRHLQSINL-SGNSIRGA------------------------------------------------------  459 (531)
Q Consensus       435 ~~p~~l~~L~~L~~L~L-s~N~l~g~------------------------------------------------------  459 (531)
                      .+|+.+++|++|+.|+| ++|.++|.                                                      
T Consensus       338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence            99999999999999999 88766555                                                      


Q ss_pred             ----------------------CCccccCCCCCCEEecCCCcCCC-----------------CCccccc--CCCCCCEEe
Q 009603          460 ----------------------IPSSLGTIASLEVLDLSYNFFNG-----------------SIPESLG--QLTALRRLN  498 (531)
Q Consensus       460 ----------------------ip~~l~~l~~L~~L~Ls~N~l~g-----------------~iP~~l~--~l~~L~~L~  498 (531)
                                            +|..|++|++|+.|+|++|+|+|                 .+|..++  ++++|+.|+
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                                  88899999999999999999998                 4999988  999999999


Q ss_pred             ccCCCCCCCCChhhhhhccccceeeeccc
Q 009603          499 LNGNTLSGRVPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       499 L~~N~l~g~iP~~~~~~~~~l~~l~l~~~  527 (531)
                      |++|++.|.+|..+++ +.+|+.|++++.
T Consensus       498 Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N  525 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYD-LPELQSLNIACN  525 (876)
T ss_dssp             EESCTTCCSCCGGGGG-CSSCCEEECTTC
T ss_pred             CcCCCCCccChHHHhC-CCCCCEEECcCC
Confidence            9999999999988866 457889988753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.64  E-value=2.7e-16  Score=173.58  Aligned_cols=145  Identities=19%  Similarity=0.290  Sum_probs=119.8

Q ss_pred             chHHHHHHHHHHhhcCCCCC----------CCCCCC-CCCCCCCCC---CccccccCCCCcceEEEEEEccCCCCcccCc
Q 009603          372 LPEEVRALQVLKNSLDLPHR----------FGWNGD-PCVPQQHPW---SGADCQFDRTSHKWVIDGLGLDNQGLRGFLP  437 (531)
Q Consensus       372 ~~~~~~aL~~~k~~~~~~~~----------~~W~~~-~C~~~~~~w---~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p  437 (531)
                      ...|+.||.+++..+..+..          .+|+.+ +|    |.|   .||.|+..     ++|+.|+|++++++|.+|
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~lp   98 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGRVP   98 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc----ccccCCCCeEEcCC-----CCEEEEEecCcccCCcCC
Confidence            34689999999998765421          257532 22    469   99999743     369999999999999999


Q ss_pred             ccccCCCCCCEEEccCCc--------------------------------------------------------------
Q 009603          438 NGISKLRHLQSINLSGNS--------------------------------------------------------------  455 (531)
Q Consensus       438 ~~l~~L~~L~~L~Ls~N~--------------------------------------------------------------  455 (531)
                      +.+++|++|+.|+|++|.                                                              
T Consensus        99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~  178 (636)
T 4eco_A           99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS  178 (636)
T ss_dssp             GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred             hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence            999999999999999883                                                              


Q ss_pred             ----------------cCccCCccccCCCCCCEEecCCCcCCCC-----------------Cccccc--CCCCCCEEecc
Q 009603          456 ----------------IRGAIPSSLGTIASLEVLDLSYNFFNGS-----------------IPESLG--QLTALRRLNLN  500 (531)
Q Consensus       456 ----------------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-----------------iP~~l~--~l~~L~~L~L~  500 (531)
                                      ++| +|..++++++|+.|+|++|+|+|.                 +|..++  ++++|++|+|+
T Consensus       179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~  257 (636)
T 4eco_A          179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY  257 (636)
T ss_dssp             CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence                            445 888899999999999999999986                 999988  99999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeeccc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~~  527 (531)
                      +|.+.|.+|..+++ +.+++.|++++.
T Consensus       258 ~n~l~~~~p~~l~~-l~~L~~L~Ls~n  283 (636)
T 4eco_A          258 NCPNLTKLPTFLKA-LPEMQLINVACN  283 (636)
T ss_dssp             CCTTCSSCCTTTTT-CSSCCEEECTTC
T ss_pred             CCcCCccChHHHhc-CCCCCEEECcCC
Confidence            99999999988866 457888888754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.54  E-value=5.4e-15  Score=166.77  Aligned_cols=148  Identities=24%  Similarity=0.301  Sum_probs=111.4

Q ss_pred             cCCchHHHHHHHHHHhhcCCCC-CCCCC-CCCCCCCCCCCCccccccCCCCcceEEEEEEccCCCCccc---Cc------
Q 009603          369 SKTLPEEVRALQVLKNSLDLPH-RFGWN-GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGF---LP------  437 (531)
Q Consensus       369 ~~~~~~~~~aL~~~k~~~~~~~-~~~W~-~~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~---~p------  437 (531)
                      ....++|++||++||+.+.+|. ..+|+ +..|    |.|.||.|+ .     ++|+.|+|+++++.|.   +|      
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~----C~w~gv~C~-~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L   76 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKNLLPDWSSNKNP----CTFDGVTCR-D-----DKVTSIDLSSKPLNVGFSAVSSSLLSL   76 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG----GGSTTEEEE-T-----TEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred             ccCCHHHHHHHHHHHhhCCCcccccCCCCCCCC----cCCcceEEC-C-----CcEEEEECCCCCcCCccCccChhHhcc
Confidence            3446789999999999998664 24796 3344    379999997 2     3699999999999987   44      


Q ss_pred             -----------------ccccCCCCCCEEEccCCccCccCCc--cccCCCCCCEEecCCCcCCCCCcccc-cCCCCCCEE
Q 009603          438 -----------------NGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRL  497 (531)
Q Consensus       438 -----------------~~l~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L  497 (531)
                                       ..++++++|++|+|++|.++|.+|.  .+++|++|++|+|++|.+.+.+|..+ .++++|++|
T Consensus        77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred             CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence                             4566777888888888888887777  78888888888888888887777665 677888888


Q ss_pred             eccCCCCCCCCChhh--hhhccccceeeecc
Q 009603          498 NLNGNTLSGRVPAAL--GGRLLHRASFKYVW  526 (531)
Q Consensus       498 ~L~~N~l~g~iP~~~--~~~~~~l~~l~l~~  526 (531)
                      +|++|++++..|..+  ...+.+++.|++++
T Consensus       157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~  187 (768)
T 3rgz_A          157 DLSANSISGANVVGWVLSDGCGELKHLAISG  187 (768)
T ss_dssp             ECCSSCCEEETHHHHHHTTCCTTCCEEECCS
T ss_pred             ECCCCccCCcCChhhhhhccCCCCCEEECCC
Confidence            888888887776652  23455677777764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.49  E-value=7.7e-15  Score=148.67  Aligned_cols=154  Identities=21%  Similarity=0.323  Sum_probs=99.2

Q ss_pred             cCCchHHHHHHHHHHhhcC-CCCC--CCCC-CCCCCCCCCCCCccccccCCC----CcceEEEEEEccCCCCcccCcccc
Q 009603          369 SKTLPEEVRALQVLKNSLD-LPHR--FGWN-GDPCVPQQHPWSGADCQFDRT----SHKWVIDGLGLDNQGLRGFLPNGI  440 (531)
Q Consensus       369 ~~~~~~~~~aL~~~k~~~~-~~~~--~~W~-~~~C~~~~~~w~gv~C~~~~~----~~~~~l~~L~L~~n~l~g~~p~~l  440 (531)
                      .....+|.+||++||..+. ++..  ..|. ...|.+..|.|.|+.|.....    ....+++.|+|++|++. .+|+.+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            4456789999999999773 3322  2452 112233345799999952100    00123667777777776 666667


Q ss_pred             cCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhh------
Q 009603          441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG------  514 (531)
Q Consensus       441 ~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~------  514 (531)
                      .+|++|+.|+|++|.++ .+|..++++++|+.|+|++|+++ .+|..++++++|++|+|++|++.|.+|..++.      
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            77777777777777777 77777777777777777777777 66777777777777777777666677665532      


Q ss_pred             --hccccceeeec
Q 009603          515 --RLLHRASFKYV  525 (531)
Q Consensus       515 --~~~~l~~l~l~  525 (531)
                        .+.+++.|+++
T Consensus       179 ~~~l~~L~~L~L~  191 (328)
T 4fcg_A          179 HQGLVNLQSLRLE  191 (328)
T ss_dssp             EEESTTCCEEEEE
T ss_pred             hccCCCCCEEECc
Confidence              23455555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.44  E-value=3.7e-13  Score=129.02  Aligned_cols=120  Identities=20%  Similarity=0.259  Sum_probs=95.2

Q ss_pred             CCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCc
Q 009603          405 PWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF  479 (531)
Q Consensus       405 ~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  479 (531)
                      .|.+|.|+......     ...++.|+|++|.+++..|..+.++++|+.|+|++|.+....+..|..+++|+.|+|++|+
T Consensus        20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            69999997543221     1347889999999998888889999999999999999975555667889999999999999


Q ss_pred             CCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       480 l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |++..+..+..+++|+.|+|++|+|+ .+|..+.. +.+++.|+++.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~  144 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQ  144 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCS
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCC
Confidence            98666667788888888888888888 78877744 45677777763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=2.7e-13  Score=126.33  Aligned_cols=121  Identities=21%  Similarity=0.252  Sum_probs=101.9

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcc-cccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY  477 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~  477 (531)
                      |.|..+.|+......     ...++.|+|++|.+++..+. .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            568888887543221     12578999999999887765 489999999999999999998899999999999999999


Q ss_pred             CcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603          478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       478 N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+|++..|..+.++++|++|+|++|++++.+|..+.. +.+++.|+++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~  134 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLA  134 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECT
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeC
Confidence            9999888888999999999999999999887877755 4578888876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.42  E-value=5.4e-13  Score=122.31  Aligned_cols=122  Identities=21%  Similarity=0.239  Sum_probs=102.3

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  478 (531)
                      |.|.++.|+......     ...++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            579999997543221     135789999999999877778899999999999999999776677899999999999999


Q ss_pred             cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++++..+..+.++++|+.|+|++|+++ .+|......+.+++.|++..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred             CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecC
Confidence            999777777899999999999999999 67776656567888888863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.41  E-value=5.8e-13  Score=124.29  Aligned_cols=120  Identities=27%  Similarity=0.318  Sum_probs=102.3

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  478 (531)
                      |.|..+.|+......     ...++.|+|++|.++ .+|..+.++++|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            567778886543221     135889999999998 67789999999999999999999888888999999999999999


Q ss_pred             cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|++..|..|.++++|+.|+|++|+++ .+|......+.++..|++.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeC
Confidence            999888889999999999999999999 6776655556788888887

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.39  E-value=1.7e-13  Score=137.83  Aligned_cols=106  Identities=30%  Similarity=0.511  Sum_probs=96.9

Q ss_pred             EEEEEEccC-CCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++ |++.+.+|..+.++++|++|+|++|.+++.+|..+.++++|+.|+|++|++++.+|..+.++++|++|+|
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            478899995 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCChhhhhhccccceeeecc
Q 009603          500 NGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++|+++|.+|..++.+..+++.|++++
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcC
Confidence            999999999999988776788888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.37  E-value=1.5e-12  Score=122.59  Aligned_cols=121  Identities=21%  Similarity=0.292  Sum_probs=81.5

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  478 (531)
                      |.|.++.|+......     ...++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|
T Consensus         7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            578888887533211     124677888888887666666777788888888888877555555677777777777777


Q ss_pred             cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      ++++..+..+.++++|++|+|++|+++ .+|......+.+++.|+++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~  132 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLY  132 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECC
Confidence            777555555677777777777777777 3444433444566666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.34  E-value=2.4e-12  Score=122.62  Aligned_cols=121  Identities=21%  Similarity=0.219  Sum_probs=75.7

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  478 (531)
                      |.|..+.|.......     ...++.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            567778886433211     123667777777777666666777777777777777777666667777777777777777


Q ss_pred             cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|+...+..|.++++|+.|+|++|++++..|..+.. +.+++.|+++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~  136 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD-LHNLNLLSLY  136 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC-CCCCCEEECC
Confidence            776433344566666666666666666444444433 3455555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.33  E-value=7e-13  Score=149.47  Aligned_cols=91  Identities=35%  Similarity=0.626  Sum_probs=87.4

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.++|.+|..+++|+.|+.|+|++|.++|.+|..+++|++|+.|||++|+++|.+|..++++++|++|+|+
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChh
Q 009603          501 GNTLSGRVPAA  511 (531)
Q Consensus       501 ~N~l~g~iP~~  511 (531)
                      +|+++|.||..
T Consensus       713 ~N~l~g~iP~~  723 (768)
T 3rgz_A          713 NNNLSGPIPEM  723 (768)
T ss_dssp             SSEEEEECCSS
T ss_pred             CCcccccCCCc
Confidence            99999999964

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.29  E-value=6e-12  Score=119.80  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      |+.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..|..+..+++|+.|+|++
T Consensus        59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  138 (220)
T 2v70_A           59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD  138 (220)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred             CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence            34444444444444444445555555555555555544444455555555555555555554455555555555555555


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |++++..|..+.. +.+++.|+++
T Consensus       139 N~l~~~~~~~~~~-l~~L~~L~L~  161 (220)
T 2v70_A          139 NQITTVAPGAFDT-LHSLSTLNLL  161 (220)
T ss_dssp             SCCCCBCTTTTTT-CTTCCEEECC
T ss_pred             CcCCEECHHHhcC-CCCCCEEEec
Confidence            5555433443332 3344455443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.28  E-value=5.8e-12  Score=114.93  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=90.0

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  478 (531)
                      |.|+.+.|+......     ...++.|+|++|.|++..|..+.++++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            568888887543221     134788999999999998999999999999999999999777777899999999999999


Q ss_pred             cCCCCCcccccCCCCCCEEeccCCCCCCCCC
Q 009603          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVP  509 (531)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP  509 (531)
                      +|++..|..+.++++|+.|+|++|.+.+..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9997666779999999999999999986654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.27  E-value=1e-11  Score=118.11  Aligned_cols=103  Identities=19%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             EEEEEccCCCCcccCc-ccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLP-NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p-~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|.+++..+ ..+.++++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            3455555555555433 234555555555555555555444455555555555555555555544555555555555555


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|++++..|..+.. +.+++.|+++
T Consensus       114 ~N~l~~~~~~~~~~-l~~L~~L~L~  137 (220)
T 2v70_A          114 SNRITCVGNDSFIG-LSSVRLLSLY  137 (220)
T ss_dssp             TSCCCCBCTTSSTT-CTTCSEEECT
T ss_pred             CCcCCeECHhHcCC-CccCCEEECC
Confidence            55555444444432 3345555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.26  E-value=1.7e-11  Score=116.70  Aligned_cols=104  Identities=24%  Similarity=0.286  Sum_probs=89.0

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..|..+.++++|+.|+|++|.++...+..|..+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            37889999999999889999999999999999999995555567889999999999999998888999999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|++++..|..+ ..+.++..|++.
T Consensus       137 ~N~l~~~~~~~~-~~l~~L~~L~L~  160 (220)
T 2v9t_B          137 DNKLQTIAKGTF-SPLRAIQTMHLA  160 (220)
T ss_dssp             SSCCSCCCTTTT-TTCTTCCEEECC
T ss_pred             CCcCCEECHHHH-hCCCCCCEEEeC
Confidence            999995444444 445678888876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.24  E-value=2.6e-11  Score=117.61  Aligned_cols=103  Identities=22%  Similarity=0.297  Sum_probs=48.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      |+.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|+|++..+..+..+++|+.|+|++
T Consensus        61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  140 (251)
T 3m19_A           61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT  140 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence            44444444444444444444445555555555555444334444555555555555555533333445555555555555


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+++ .+|......+.+++.|+++
T Consensus       141 N~l~-~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A          141 NQLQ-SIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CcCC-ccCHHHcCcCcCCCEEECC
Confidence            5555 2333222223445555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.24  E-value=1.9e-11  Score=119.79  Aligned_cols=132  Identities=18%  Similarity=0.231  Sum_probs=80.7

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccC
Q 009603          392 FGWNGDPCVPQQHPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGT  466 (531)
Q Consensus       392 ~~W~~~~C~~~~~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~  466 (531)
                      +.|.+..|.. ...|..+.|+......     +..++.|+|++|++++..+..+.++++|+.|+|++|.++...+..+..
T Consensus         5 C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~   83 (270)
T 2o6q_A            5 CKKDGGVCSC-NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE   83 (270)
T ss_dssp             BGGGTCSBEE-ETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS
T ss_pred             CCCCCCCCEe-CCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC
Confidence            4677777632 2246667776433221     123677888888887766667777777777777777777444444566


Q ss_pred             CCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603          467 IASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       467 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +++|+.|+|++|++++..+..+.++++|++|+|++|++++ +|......+.+++.|+++
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls  141 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLG  141 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECC
Confidence            7777777777777765444555666666666666666663 333222334455555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.21  E-value=1.8e-11  Score=113.82  Aligned_cols=90  Identities=26%  Similarity=0.352  Sum_probs=85.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.|++..|..+.++++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++.+|..+..+++|++|+|+
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            37899999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCh
Q 009603          501 GNTLSGRVPA  510 (531)
Q Consensus       501 ~N~l~g~iP~  510 (531)
                      +|.+.+..+-
T Consensus       135 ~N~l~c~c~l  144 (192)
T 1w8a_A          135 SNPFNCNCHL  144 (192)
T ss_dssp             TCCBCCSGGG
T ss_pred             CCCccCcCcc
Confidence            9999988763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=6.1e-11  Score=108.07  Aligned_cols=99  Identities=24%  Similarity=0.306  Sum_probs=85.5

Q ss_pred             EEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCC
Q 009603          423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN  502 (531)
Q Consensus       423 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N  502 (531)
                      +.|++++|+|+. +|..+  .+.|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            479999999985 66655  389999999999999888999999999999999999999777777899999999999999


Q ss_pred             CCCCCCChhhhhhccccceeeec
Q 009603          503 TLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       503 ~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|+ .+|......+.+++.|+++
T Consensus        89 ~l~-~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           89 QLK-SIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECC
T ss_pred             ccC-EeCHHHhcCCCCCCEEEeC
Confidence            999 4665544556788888887

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.20  E-value=3.7e-11  Score=121.42  Aligned_cols=103  Identities=23%  Similarity=0.280  Sum_probs=91.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++ +|+.+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.+.+|..+.++++|+.|+|+
T Consensus       207 ~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          207 NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred             CCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence            37889999999996 56679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|++.|.+|+.++++ .++..+.+.
T Consensus       286 ~n~~~~~iP~~l~~L-~~L~~l~l~  309 (328)
T 4fcg_A          286 GCVNLSRLPSLIAQL-PANCIILVP  309 (328)
T ss_dssp             TCTTCCCCCGGGGGS-CTTCEEECC
T ss_pred             CCCchhhccHHHhhc-cCceEEeCC
Confidence            999999999998775 446666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=7.2e-11  Score=108.09  Aligned_cols=89  Identities=19%  Similarity=0.241  Sum_probs=73.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.|++..|..+.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|+
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            47789999999998888888899999999999999986555567888999999999999986555568889999999999


Q ss_pred             CCCCCCCCCh
Q 009603          501 GNTLSGRVPA  510 (531)
Q Consensus       501 ~N~l~g~iP~  510 (531)
                      +|.+.. .|.
T Consensus       114 ~N~~~c-~~~  122 (174)
T 2r9u_A          114 NNPWDC-ECR  122 (174)
T ss_dssp             SSCBCT-TBG
T ss_pred             CCCccc-ccc
Confidence            998884 444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.19  E-value=5e-11  Score=114.10  Aligned_cols=102  Identities=21%  Similarity=0.271  Sum_probs=70.5

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      |+.|+|++|.|+...+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+|+ .+|..+..+++|++|+|++
T Consensus        66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~  144 (229)
T 3e6j_A           66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ  144 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred             CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence            667777777776555556677777777777777777555556677777777777777777 6777777777777777777


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+|+ .+|......+.++..|++.
T Consensus       145 N~l~-~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A          145 NQLK-SIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECT
T ss_pred             CcCC-ccCHHHHhCCCCCCEEEee
Confidence            7777 4444433444566666665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.19  E-value=5.5e-11  Score=115.22  Aligned_cols=105  Identities=23%  Similarity=0.306  Sum_probs=90.2

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+|++..|..+..+++|++|+|+
T Consensus        84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence            48899999999998888889999999999999999997766778999999999999999997777789999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|++++..|..+ ..+.++..|++..
T Consensus       164 ~N~l~~~~~~~~-~~l~~L~~L~l~~  188 (251)
T 3m19_A          164 TNQLQSVPHGAF-DRLGKLQTITLFG  188 (251)
T ss_dssp             SSCCSCCCTTTT-TTCTTCCEEECCS
T ss_pred             CCcCCccCHHHH-hCCCCCCEEEeeC
Confidence            999995444444 4456788888863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.18  E-value=1.7e-11  Score=129.01  Aligned_cols=89  Identities=22%  Similarity=0.294  Sum_probs=55.2

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCC-ccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|.+++..|..+.++++|+.|+|++|.+.+.++ ..|..+++|++|+|++|++++..|..++++++|++|+|
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            46677777777776666666666666666666666655543 34566666666666666666555555555555555555


Q ss_pred             cCCCCCCCCC
Q 009603          500 NGNTLSGRVP  509 (531)
Q Consensus       500 ~~N~l~g~iP  509 (531)
                      ++|.+++.+|
T Consensus       111 ~~n~l~~~~~  120 (455)
T 3v47_A          111 TQCNLDGAVL  120 (455)
T ss_dssp             TTSCCBTHHH
T ss_pred             CCCCCCcccc
Confidence            5555554333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.18  E-value=7.5e-11  Score=110.77  Aligned_cols=103  Identities=24%  Similarity=0.269  Sum_probs=52.3

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence            44555555555544444445555555555555555544334445555555555555555544444455555555555555


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+++ .+|......+.+++.|++.
T Consensus       134 N~l~-~~~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A          134 NQLK-SVPDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             SCCS-CCCTTTTTTCTTCCEEECC
T ss_pred             Cccc-eeCHHHhccCCCccEEEec
Confidence            5555 2333322333445555444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.18  E-value=3.4e-11  Score=131.56  Aligned_cols=105  Identities=18%  Similarity=0.164  Sum_probs=86.8

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            47899999999998888889999999999999999997777788999999999999999986666778889999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|++++ +|+.....+.+|+.|++++
T Consensus       133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~  157 (635)
T 4g8a_A          133 ETNLAS-LENFPIGHLKTLKELNVAH  157 (635)
T ss_dssp             TSCCCC-STTCCCTTCTTCCEEECCS
T ss_pred             CCcCCC-CChhhhhcCcccCeecccc
Confidence            998884 5544334456788888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.17  E-value=3.1e-11  Score=107.11  Aligned_cols=103  Identities=22%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCC-CcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|.+++.  ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++. .|..+..+++|++|+|
T Consensus        43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence            478899999999876  7788899999999999999987888888899999999999999863 4478889999999999


Q ss_pred             cCCCCCCCCC--hhhhhhccccceeeec
Q 009603          500 NGNTLSGRVP--AALGGRLLHRASFKYV  525 (531)
Q Consensus       500 ~~N~l~g~iP--~~~~~~~~~l~~l~l~  525 (531)
                      ++|.+++..+  ......+.+++.|+++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999985433  1344555677777764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.16  E-value=7.5e-11  Score=107.98  Aligned_cols=99  Identities=23%  Similarity=0.278  Sum_probs=85.2

Q ss_pred             EEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCC
Q 009603          423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN  502 (531)
Q Consensus       423 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N  502 (531)
                      +.+++++|++. .+|..+.  ++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            36899999995 6676664  89999999999999988999999999999999999999765566799999999999999


Q ss_pred             CCCCCCChhhhhhccccceeeec
Q 009603          503 TLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       503 ~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|+ .+|......+.++..|++.
T Consensus        92 ~l~-~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           92 HLK-SIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             CCC-CCCTTTTTTCTTCSEEECC
T ss_pred             ccc-eeCHHHhccccCCCEEEeC
Confidence            999 5676644556788888886

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.16  E-value=5.4e-11  Score=121.83  Aligned_cols=102  Identities=22%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCccccc-CCCCCCEEEccCCccCccCCccccCCCCCCEEecCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY  477 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~  477 (531)
                      |.+..+.|.......     ...++.|+|++|.|++..+..+. ++++|+.|+|++|.+++..|..|..+++|+.|+|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            456666675432211     11244566666666555544444 555555555555555544444455555555555555


Q ss_pred             CcCCCCCcccccCCCCCCEEeccCCCCC
Q 009603          478 NFFNGSIPESLGQLTALRRLNLNGNTLS  505 (531)
Q Consensus       478 N~l~g~iP~~l~~l~~L~~L~L~~N~l~  505 (531)
                      |+|++..+..|.++++|+.|+|++|+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~  125 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIV  125 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence            5555433344444455555555555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.15  E-value=2.4e-11  Score=107.82  Aligned_cols=103  Identities=22%  Similarity=0.247  Sum_probs=90.7

Q ss_pred             EEEEEEccCCCCc-ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|++++|.++ +.+|..+..+++|+.|+|++|.+++.  ..++.+++|+.|+|++|++++.+|..+.++++|++|+|
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            4789999999999 88999999999999999999999966  78999999999999999999889998888999999999


Q ss_pred             cCCCCCCC-CChhhhhhccccceeeecc
Q 009603          500 NGNTLSGR-VPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       500 ~~N~l~g~-iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++|.+++. .|..+.. +.+++.|++++
T Consensus        96 s~N~i~~~~~~~~~~~-l~~L~~L~l~~  122 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKK-LENLKSLDLFN  122 (149)
T ss_dssp             TTSCCCSHHHHGGGGG-CTTCCEEECTT
T ss_pred             CCCcCCChHHHHHHhh-CCCCCEEeCcC
Confidence            99999952 2355544 56789998874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.15  E-value=4.7e-11  Score=108.17  Aligned_cols=105  Identities=24%  Similarity=0.235  Sum_probs=88.8

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCC-CcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|.+++.  ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++. .+..+..+++|+.|+|
T Consensus        50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence            488999999999876  7899999999999999999988888888899999999999999953 2278999999999999


Q ss_pred             cCCCCCCCCCh---hhhhhccccceeeecccc
Q 009603          500 NGNTLSGRVPA---ALGGRLLHRASFKYVWAM  528 (531)
Q Consensus       500 ~~N~l~g~iP~---~~~~~~~~l~~l~l~~~~  528 (531)
                      ++|.++ .+|.   .....+.+++.|++....
T Consensus       128 ~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          128 FNCEVT-NLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CSSGGG-TSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             eCCcCc-chHHHHHHHHHhCccCcEecCCCCC
Confidence            999999 4555   344556688888887543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.14  E-value=1.5e-11  Score=135.60  Aligned_cols=95  Identities=12%  Similarity=0.144  Sum_probs=85.2

Q ss_pred             CCcccCcccccCCCCCCEEEccCCccCcc-----------------CCcccc--CCCCCCEEecCCCcCCCCCcccccCC
Q 009603          431 GLRGFLPNGISKLRHLQSINLSGNSIRGA-----------------IPSSLG--TIASLEVLDLSYNFFNGSIPESLGQL  491 (531)
Q Consensus       431 ~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-----------------ip~~l~--~l~~L~~L~Ls~N~l~g~iP~~l~~l  491 (531)
                      +++| +|..+++|++|+.|+|++|.++|.                 +|..++  +|++|+.|+|++|++.|.+|..++++
T Consensus       194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            3445 788899999999999999999986                 999999  99999999999999999999999999


Q ss_pred             CCCCEEeccCCC-CCC-CCChhhhhh-----ccccceeeecc
Q 009603          492 TALRRLNLNGNT-LSG-RVPAALGGR-----LLHRASFKYVW  526 (531)
Q Consensus       492 ~~L~~L~L~~N~-l~g-~iP~~~~~~-----~~~l~~l~l~~  526 (531)
                      ++|++|+|++|+ ++| .+|..++.+     +.+++.|++++
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence            999999999998 998 899998876     37788888874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.14  E-value=5.9e-11  Score=128.01  Aligned_cols=105  Identities=23%  Similarity=0.258  Sum_probs=89.0

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..|..+.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..++++++|++|+|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            58899999999998888889999999999999999998888889999999999999999998777778999999999999


Q ss_pred             CCCCCC-CCChhhhhhccccceeeecc
Q 009603          501 GNTLSG-RVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g-~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++ .+|..++. +.+++.|+++.
T Consensus       107 ~n~l~~~~~~~~~~~-l~~L~~L~L~~  132 (549)
T 2z81_A          107 GNPYQTLGVTSLFPN-LTNLQTLRIGN  132 (549)
T ss_dssp             TCCCSSSCSSCSCTT-CTTCCEEEEEE
T ss_pred             CCcccccchhhhhhc-cCCccEEECCC
Confidence            999885 35555544 45677777764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.14  E-value=7.2e-11  Score=120.27  Aligned_cols=105  Identities=26%  Similarity=0.334  Sum_probs=89.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..+.++++|+.|+|++|++++..+..+.++++|++|+|+
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            58899999999998777789999999999999999998888889999999999999999996555558899999999999


Q ss_pred             CCCCCCCCCh-hhhhhccccceeeecc
Q 009603          501 GNTLSGRVPA-ALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~-~~~~~~~~l~~l~l~~  526 (531)
                      +|+++ .+|. .....+.+++.|+++.
T Consensus       133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~  158 (353)
T 2z80_A          133 GNPYK-TLGETSLFSHLTKLQILRVGN  158 (353)
T ss_dssp             TCCCS-SSCSSCSCTTCTTCCEEEEEE
T ss_pred             CCCCc-ccCchhhhccCCCCcEEECCC
Confidence            99998 6776 4445566788888875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.13  E-value=9.3e-11  Score=120.07  Aligned_cols=83  Identities=27%  Similarity=0.278  Sum_probs=40.1

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCccc-c---cCCCCCCEE
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-L---GQLTALRRL  497 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l---~~l~~L~~L  497 (531)
                      |+.|+|++|.|++..+..+.+|++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++ +|.. +   ..+++|+.|
T Consensus        90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEE
T ss_pred             CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEE
Confidence            4445555555554444445555555555555555554444455555555555555555552 3322 2   334555555


Q ss_pred             eccCCCCC
Q 009603          498 NLNGNTLS  505 (531)
Q Consensus       498 ~L~~N~l~  505 (531)
                      +|++|+|+
T Consensus       169 ~L~~N~l~  176 (361)
T 2xot_A          169 DLSSNKLK  176 (361)
T ss_dssp             ECCSSCCC
T ss_pred             ECCCCCCC
Confidence            55555555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.13  E-value=1.3e-10  Score=122.66  Aligned_cols=121  Identities=22%  Similarity=0.244  Sum_probs=99.8

Q ss_pred             CCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCc
Q 009603          405 PWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF  479 (531)
Q Consensus       405 ~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  479 (531)
                      .|..+.|.......     ...++.|+|++|++++..+..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            35677786433211     1357899999999999999999999999999999999998888999999999999999999


Q ss_pred             CCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       480 l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +++..+..+..+++|++|+|++|.++ .+|......+.+++.|++..
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred             CCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCC
Confidence            99766677999999999999999998 56665555566777777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=1.1e-10  Score=118.49  Aligned_cols=102  Identities=25%  Similarity=0.327  Sum_probs=66.3

Q ss_pred             CCCCccccccC-CCC------cceEEEEEEccC-CCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEec
Q 009603          404 HPWSGADCQFD-RTS------HKWVIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDL  475 (531)
Q Consensus       404 ~~w~gv~C~~~-~~~------~~~~l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L  475 (531)
                      |.|..+.|+.. ...      ....|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|+.|+|
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            46777778643 111      112366777775 7777666667777777777777777777766667777777777777


Q ss_pred             CCCcCCCCCcccccCCCCCCEEeccCCCCCC
Q 009603          476 SYNFFNGSIPESLGQLTALRRLNLNGNTLSG  506 (531)
Q Consensus       476 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g  506 (531)
                      ++|+|++..|..+..++ |+.|+|.+|.|..
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            77777744444444444 7777777777763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.12  E-value=1.8e-10  Score=113.09  Aligned_cols=105  Identities=24%  Similarity=0.259  Sum_probs=87.8

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence            37889999999998877778999999999999999997777778899999999999999997777778899999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|++++..|..+ ..+.+++.|++..
T Consensus       190 ~N~l~~~~~~~~-~~l~~L~~L~l~~  214 (272)
T 3rfs_A          190 QNQLKSVPDGVF-DRLTSLQYIWLHD  214 (272)
T ss_dssp             SSCCSCCCTTTT-TTCTTCCEEECCS
T ss_pred             CCcCCccCHHHH-hCCcCCCEEEccC
Confidence            999996555444 4456788888763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.11  E-value=2.1e-10  Score=112.61  Aligned_cols=90  Identities=21%  Similarity=0.269  Sum_probs=80.7

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus       134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence            47899999999998877778999999999999999997777778999999999999999998888788999999999999


Q ss_pred             CCCCCCCCCh
Q 009603          501 GNTLSGRVPA  510 (531)
Q Consensus       501 ~N~l~g~iP~  510 (531)
                      +|.+.|..|.
T Consensus       214 ~N~~~~~~~~  223 (272)
T 3rfs_A          214 DNPWDCTCPG  223 (272)
T ss_dssp             SSCBCCCTTT
T ss_pred             CCCccccCcH
Confidence            9999988873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.11  E-value=2.2e-10  Score=113.66  Aligned_cols=103  Identities=23%  Similarity=0.235  Sum_probs=87.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+..+.++++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+.++++|+.|+|+
T Consensus       101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (290)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence            37889999999998878889999999999999999997777778899999999999999995555567889999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|+++ .+|..++... ++..+++.
T Consensus       181 ~N~l~-~ip~~~~~~~-~L~~l~L~  203 (290)
T 1p9a_G          181 ENSLY-TIPKGFFGSH-LLPFAFLH  203 (290)
T ss_dssp             SSCCC-CCCTTTTTTC-CCSEEECC
T ss_pred             CCcCC-ccChhhcccc-cCCeEEeC
Confidence            99999 8898887654 67777765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=1.6e-10  Score=125.38  Aligned_cols=101  Identities=27%  Similarity=0.335  Sum_probs=81.5

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCC-cccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~L  499 (531)
                      .|+.|+|++|.|+ .+|..+++|++|+.|+|++|.|++ +| .++.|++|+.|+|++|+|++.. |..++.+++|+.|+|
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            4778899999888 778888889999999999999886 67 7888899999999999998776 888888999999999


Q ss_pred             cCCCCCCCCCh--hhhhhccccceeee
Q 009603          500 NGNTLSGRVPA--ALGGRLLHRASFKY  524 (531)
Q Consensus       500 ~~N~l~g~iP~--~~~~~~~~l~~l~l  524 (531)
                      ++|.|++..|.  .+...+.+++.||+
T Consensus       541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          541 QGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99988865543  23344667777764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.10  E-value=3.1e-11  Score=136.86  Aligned_cols=91  Identities=20%  Similarity=0.213  Sum_probs=80.5

Q ss_pred             CcccccCCCCCCEEEccCCccCc-----------------cCCcccc--CCCCCCEEecCCCcCCCCCcccccCCCCCCE
Q 009603          436 LPNGISKLRHLQSINLSGNSIRG-----------------AIPSSLG--TIASLEVLDLSYNFFNGSIPESLGQLTALRR  496 (531)
Q Consensus       436 ~p~~l~~L~~L~~L~Ls~N~l~g-----------------~ip~~l~--~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~  496 (531)
                      +|..+++|++|+.|+|++|.|+|                 .+|..++  +|++|+.|+|++|++.|.+|..++++++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            78889999999999999999998                 4899988  9999999999999999999999999999999


Q ss_pred             EeccCCC-CCC-CCChhhhhhc------cccceeeecc
Q 009603          497 LNLNGNT-LSG-RVPAALGGRL------LHRASFKYVW  526 (531)
Q Consensus       497 L~L~~N~-l~g-~iP~~~~~~~------~~l~~l~l~~  526 (531)
                      |+|++|+ ++| .+|..++.+.      .+++.|++++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence            9999998 998 8998887654      4677787764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.10  E-value=1e-10  Score=106.00  Aligned_cols=101  Identities=26%  Similarity=0.304  Sum_probs=69.9

Q ss_pred             EEEEEccCCCCc-ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|.+. +.+|..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++.+|..+.++++|++|+|+
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            567777777776 66777677777777777777777754  567777777777777777776677666667777777777


Q ss_pred             CCCCCCCCC--hhhhhhccccceeeecc
Q 009603          501 GNTLSGRVP--AALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP--~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++ +|  ..+. .+.+++.|++++
T Consensus       104 ~N~l~~-~~~~~~l~-~l~~L~~L~l~~  129 (168)
T 2ell_A          104 GNKLKD-ISTLEPLK-KLECLKSLDLFN  129 (168)
T ss_dssp             SSSCCS-SGGGGGGS-SCSCCCEEECCS
T ss_pred             CCccCc-chhHHHHh-cCCCCCEEEeeC
Confidence            777773 43  3343 345666776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.10  E-value=1e-10  Score=116.49  Aligned_cols=104  Identities=22%  Similarity=0.284  Sum_probs=62.0

Q ss_pred             EEEEEccCCCCcc-cCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|.+.+ .+|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus       152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence            4556666666655 345556666666666666666665555566666666666666666665444455566666666666


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|++++..|..+..++.+++.|+++
T Consensus       232 ~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          232 LNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             TSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             CCCCcccCHHHHHhhhccCCEEEcc
Confidence            6666655555555554455555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=1.6e-10  Score=125.50  Aligned_cols=99  Identities=25%  Similarity=0.314  Sum_probs=90.1

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.|++ +|. ++.|++|+.|+|++|.|+ .+|..++.|++|+.|+|++|+|++ +| .++++++|+.|+|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            6789999999997 565 999999999999999999 899999999999999999999996 78 899999999999999


Q ss_pred             CCCCCCC-Chhhhhhccccceeeecc
Q 009603          502 NTLSGRV-PAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~i-P~~~~~~~~~l~~l~l~~  526 (531)
                      |+|++.+ |..++. +.+|..|+++.
T Consensus       518 N~l~~~~~p~~l~~-l~~L~~L~L~~  542 (567)
T 1dce_A          518 NRLQQSAAIQPLVS-CPRLVLLNLQG  542 (567)
T ss_dssp             SCCCSSSTTGGGGG-CTTCCEEECTT
T ss_pred             CCCCCCCCcHHHhc-CCCCCEEEecC
Confidence            9999776 888866 56789998873

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.09  E-value=1.2e-10  Score=127.25  Aligned_cols=105  Identities=22%  Similarity=0.282  Sum_probs=92.6

Q ss_pred             EEEEEEccCCCCc-ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|.+. +.+|..+..+++|+.|+|++|++++..|..|.+|++|+.|+|++|+|++..|..+.++++|++|+|
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence            3678999998754 456778999999999999999999888999999999999999999999888888999999999999


Q ss_pred             cCCCCCCCCChhhhhhccccceeeec
Q 009603          500 NGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      ++|+|++..|..+..++.+++.|+++
T Consensus       550 s~N~l~~~~~~~l~~l~~~L~~L~L~  575 (635)
T 4g8a_A          550 SLNHIMTSKKQELQHFPSSLAFLNLT  575 (635)
T ss_dssp             TTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred             CCCcCCCCCHHHHHhhhCcCCEEEee
Confidence            99999988888888877788888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.09  E-value=1.6e-10  Score=113.39  Aligned_cols=105  Identities=19%  Similarity=0.277  Sum_probs=76.9

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+.+..+..+.++++|+.|+|++|.+++..+..+.++++|+.|+|++|++.+..+..++++++|++|+|+
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  132 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence            36677777777776666667777777777777777776666777777777777777777776655567788888888888


Q ss_pred             CCCCCC-CCChhhhhhccccceeeecc
Q 009603          501 GNTLSG-RVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g-~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++ .+|..+.. +.+++.|++++
T Consensus       133 ~n~l~~~~l~~~~~~-l~~L~~L~Ls~  158 (276)
T 2z62_A          133 HNLIQSFKLPEYFSN-LTNLEHLDLSS  158 (276)
T ss_dssp             SSCCCCCCCCGGGGG-CTTCCEEECCS
T ss_pred             CCccceecCchhhcc-CCCCCEEECCC
Confidence            888875 36776655 45777887764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=3e-10  Score=115.34  Aligned_cols=98  Identities=17%  Similarity=0.178  Sum_probs=85.9

Q ss_pred             EEEccCC-CCcccCcccccCCCCCCEEEccC-CccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          424 GLGLDNQ-GLRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       424 ~L~L~~n-~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      .++++++ +|++ +|. |..+++|+.|+|++ |.|++..|..|+.|++|+.|+|++|+|++..|..|.+|++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4689998 8885 677 99999999999996 999988888999999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+|+ .+|..+...+. |..|+|.
T Consensus        90 N~l~-~~~~~~~~~~~-L~~l~l~  111 (347)
T 2ifg_A           90 NALE-SLSWKTVQGLS-LQELVLS  111 (347)
T ss_dssp             SCCS-CCCSTTTCSCC-CCEEECC
T ss_pred             Cccc-eeCHHHcccCC-ceEEEee
Confidence            9999 56666555443 7777776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.07  E-value=2.2e-10  Score=120.44  Aligned_cols=103  Identities=29%  Similarity=0.344  Sum_probs=63.1

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..++.+++|+.|+|++|++++..|..+.++++|++|+|++
T Consensus       301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  380 (455)
T 3v47_A          301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT  380 (455)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence            55666666666666666666666666666666666655566666666666666666666655566666666666666666


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+++ .+|......+.+++.|+++
T Consensus       381 N~l~-~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          381 NQLK-SVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             SCCS-CCCTTTTTTCTTCCEEECC
T ss_pred             Cccc-cCCHhHhccCCcccEEEcc
Confidence            6666 3444433444555666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.06  E-value=5.1e-10  Score=109.62  Aligned_cols=103  Identities=24%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.++++|++|+|++
T Consensus       111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  190 (270)
T 2o6q_A          111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN  190 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence            66777777777776666677777777777777777755555567777777777777777765555677777777777777


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+++ .+|......+.++..|++.
T Consensus       191 N~l~-~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          191 NQLK-RVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             SCCS-CCCTTTTTTCTTCCEEECC
T ss_pred             CcCC-cCCHHHhccccCCCEEEec
Confidence            7777 4554433445566666665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.05  E-value=5.3e-10  Score=110.92  Aligned_cols=83  Identities=22%  Similarity=0.271  Sum_probs=52.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+++..+..+..+++|+.|+|++|+++...+..+..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++
T Consensus       126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCS
T ss_pred             CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCC
Confidence            566666666666555555666666666666666666443444566666666666666666 5666666666666666666


Q ss_pred             CCCC
Q 009603          502 NTLS  505 (531)
Q Consensus       502 N~l~  505 (531)
                      |.+.
T Consensus       205 Np~~  208 (290)
T 1p9a_G          205 NPWL  208 (290)
T ss_dssp             CCBC
T ss_pred             CCcc
Confidence            6665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.05  E-value=2.9e-10  Score=120.51  Aligned_cols=121  Identities=16%  Similarity=0.167  Sum_probs=91.6

Q ss_pred             CCCccccccCCCC-----cceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCc
Q 009603          405 PWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF  479 (531)
Q Consensus       405 ~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  479 (531)
                      .|..|.|......     .+..++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|.+|++|+.|+|++|+
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            4667888643321     11247788999999988888888889999999999998888888888888888888888888


Q ss_pred             CCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       480 l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +++..+..|.++++|++|+|++|.+++..|..+.. +.+|+.|++..
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~l~~  137 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD-LYNLKSLEVGD  137 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEEECC
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccc-cccCCEEECCC
Confidence            88555556788888888888888888666655543 45677777653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.04  E-value=4.9e-10  Score=110.46  Aligned_cols=103  Identities=23%  Similarity=0.259  Sum_probs=69.1

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+.+..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus       131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence            56677777777766555667777777777777777755555567777777777777777766677777777777777777


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |.+++ +|......+.+++.|+++
T Consensus       211 n~l~~-~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          211 NNLSA-LPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             SCCSC-CCHHHHTTCTTCCEEECC
T ss_pred             CcCCc-CCHHHcccCcccCEEecc
Confidence            77774 444333344566666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.04  E-value=6e-10  Score=109.30  Aligned_cols=104  Identities=19%  Similarity=0.269  Sum_probs=89.5

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-CCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|.+.+..+..+.++++|+.|+|++|.+.+..+..++.+++|+.|+|++|++++ .+|..+.++++|++|+|
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L  156 (276)
T 2z62_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence            48899999999999988899999999999999999998777789999999999999999987 47999999999999999


Q ss_pred             cCCCCCCCCChhhhhhccccc----eeeec
Q 009603          500 NGNTLSGRVPAALGGRLLHRA----SFKYV  525 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~~~~l~----~l~l~  525 (531)
                      ++|++++..+..+..+ .++.    .|+++
T Consensus       157 s~N~l~~~~~~~~~~l-~~L~~l~l~L~ls  185 (276)
T 2z62_A          157 SSNKIQSIYCTDLRVL-HQMPLLNLSLDLS  185 (276)
T ss_dssp             CSSCCCEECGGGGHHH-HTCTTCCEEEECC
T ss_pred             CCCCCCcCCHHHhhhh-hhccccceeeecC
Confidence            9999996555555543 3444    56655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.03  E-value=6.1e-10  Score=109.75  Aligned_cols=105  Identities=23%  Similarity=0.296  Sum_probs=86.5

Q ss_pred             EEEEEEccCCC-CcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQG-LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~-l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|. +....+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+.++++|+.|+|
T Consensus        81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            47889999997 77666788889999999999999999877888889999999999999998766667888999999999


Q ss_pred             cCCCCCCCCChhhhhhccccceeeecc
Q 009603          500 NGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++|.++ .+|......+.+++.|++++
T Consensus       161 ~~n~l~-~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          161 HGNRIS-SVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             CCCccc-ccCHHHhcCccccCEEECCC
Confidence            999998 45554334456788888874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.03  E-value=2.3e-10  Score=124.90  Aligned_cols=105  Identities=17%  Similarity=0.046  Sum_probs=80.3

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..|..+.++++|++|+|++|.+.+..|..|.++++|+.|+|++|++++..|..++++++|++|+|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            47788888888888778888888888888888888887778888888888888888888887777778888888888888


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++..|..+ ..+.+++.|++++
T Consensus       114 ~n~i~~l~~~~~-~~l~~L~~L~L~~  138 (606)
T 3t6q_A          114 QTGISSIDFIPL-HNQKTLESLYLGS  138 (606)
T ss_dssp             TSCCSCGGGSCC-TTCTTCCEEECCS
T ss_pred             ccCcccCCcchh-ccCCcccEEECCC
Confidence            887774334444 3345666666664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.03  E-value=6.2e-10  Score=112.30  Aligned_cols=119  Identities=19%  Similarity=0.221  Sum_probs=94.2

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  478 (531)
                      |.|..+.|+......     ...++.|+|++|.+.+..+..+.++++|+.|+|++|.+++..|..++++++|+.|+|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            568888886433211     135789999999999888889999999999999999999888999999999999999999


Q ss_pred             cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +++ .+|..+.  ++|++|+|++|.++ .+|......+.+++.|++++
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~  156 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGG  156 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCS
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCC
Confidence            998 7776654  77888888888887 45554444456677777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.03  E-value=2.3e-10  Score=104.61  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=86.8

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc--cccCCCCCCEEe
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLN  498 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~  498 (531)
                      .++.|+|++|.+++.  +.+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            478999999999976  67899999999999999999654455589999999999999996 6776  788999999999


Q ss_pred             ccCCCCCCCCChh---hhhhccccceeeeccc
Q 009603          499 LNGNTLSGRVPAA---LGGRLLHRASFKYVWA  527 (531)
Q Consensus       499 L~~N~l~g~iP~~---~~~~~~~l~~l~l~~~  527 (531)
                      |++|.++ .+|..   +...+.++..|+++..
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence            9999998 77875   3445667888887743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.03  E-value=2.3e-10  Score=127.96  Aligned_cols=92  Identities=27%  Similarity=0.450  Sum_probs=72.4

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .|+.|+|++|.|+ .+|..|++|++|+.|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .+|..|++|++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            3667888888887 77777888888888888888888 77878888888888888888876 777778888888888888


Q ss_pred             CCCCCCCCChhhhhh
Q 009603          501 GNTLSGRVPAALGGR  515 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~  515 (531)
                      +|.|+|.+|..+..+
T Consensus       325 ~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          325 GNPLEKQFLKILTEK  339 (727)
T ss_dssp             TSCCCSHHHHHHHHH
T ss_pred             CCccCCCChHHHhhc
Confidence            888887777766553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.03  E-value=5.3e-10  Score=117.48  Aligned_cols=121  Identities=21%  Similarity=0.218  Sum_probs=95.1

Q ss_pred             CCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCc
Q 009603          405 PWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF  479 (531)
Q Consensus       405 ~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  479 (531)
                      .|..+.|.......     ...++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..|.++++|+.|+|++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            35678886433221     1246789999999998888889999999999999999998777889999999999999999


Q ss_pred             CCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       480 l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++...+..+..+++|++|+|++|.++ .+|......+.+++.|++..
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred             CCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCC
Confidence            99666667889999999999999988 55554445556677777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.03  E-value=3.9e-10  Score=103.06  Aligned_cols=89  Identities=19%  Similarity=0.279  Sum_probs=80.4

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|++|+|+
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            37899999999998777778999999999999999997777778999999999999999996655567889999999999


Q ss_pred             CCCCCCCCC
Q 009603          501 GNTLSGRVP  509 (531)
Q Consensus       501 ~N~l~g~iP  509 (531)
                      +|.+.+..|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            999998776

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.02  E-value=6.3e-10  Score=121.49  Aligned_cols=94  Identities=20%  Similarity=0.316  Sum_probs=62.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-CCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|.+++..|..+++|++|++|+|++|.+.+..|..++++++|+.|+|++|++.+ .+|..++++++|++|+|+
T Consensus        82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls  161 (606)
T 3vq2_A           82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS  161 (606)
T ss_dssp             CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred             cCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence            5667777777766666667777777777777777765555666677777777777777664 556667777777777777


Q ss_pred             CCCCCCCCChhhhhh
Q 009603          501 GNTLSGRVPAALGGR  515 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~  515 (531)
                      +|++++..|..++.+
T Consensus       162 ~n~l~~~~~~~~~~l  176 (606)
T 3vq2_A          162 YNYIQTITVNDLQFL  176 (606)
T ss_dssp             SSCCCEECTTTTHHH
T ss_pred             CCcceecChhhhhhh
Confidence            777765555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.02  E-value=4.7e-10  Score=104.46  Aligned_cols=101  Identities=18%  Similarity=0.224  Sum_probs=78.0

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+..+..|++|+.|+|++|.+++..|..++.+++|+.|+|++|++.+.+| .+..+++|+.|+|+
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence            36788888888887777788888888888888888887778888888888888888887444666 57888888888888


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|.+++ +| .+.. +.+++.|++.
T Consensus       168 ~n~i~~-~~-~l~~-l~~L~~L~l~  189 (197)
T 4ezg_A          168 FDGVHD-YR-GIED-FPKLNQLYAF  189 (197)
T ss_dssp             TBCCCC-CT-TGGG-CSSCCEEEEC
T ss_pred             CCCCcC-hH-Hhcc-CCCCCEEEee
Confidence            888874 55 4433 4567777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.02  E-value=6.4e-11  Score=132.45  Aligned_cols=101  Identities=27%  Similarity=0.396  Sum_probs=88.8

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .|+.|+|++|.+. .+|..+.+|++|+.|+|++|.|+ .+|..|+.|++|+.|+|++|+|+ .+|..|++|++|++|+|+
T Consensus       225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred             CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence            3778999999988 77888889999999999999999 88999999999999999999999 889999999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.|+ .||..++. +.+|..|+|+.
T Consensus       302 ~N~l~-~lp~~~~~-l~~L~~L~L~~  325 (727)
T 4b8c_D          302 DNMVT-TLPWEFGN-LCNLQFLGVEG  325 (727)
T ss_dssp             SSCCC-CCCSSTTS-CTTCCCEECTT
T ss_pred             CCCCC-ccChhhhc-CCCccEEeCCC
Confidence            99997 88988655 56788888864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.01  E-value=4.9e-10  Score=111.54  Aligned_cols=104  Identities=20%  Similarity=0.259  Sum_probs=93.5

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCc-cCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|.+.+..+..+.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus       128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            7899999999999999999999999999999999997 688899999999999999999998889999999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++..+..+ ..+.+++.|++++
T Consensus       208 ~N~l~~~~~~~~-~~l~~L~~L~L~~  232 (306)
T 2z66_A          208 HNNFFSLDTFPY-KCLNSLQVLDYSL  232 (306)
T ss_dssp             TSCCSBCCSGGG-TTCTTCCEEECTT
T ss_pred             CCccCccChhhc-cCcccCCEeECCC
Confidence            999995444455 4467889999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.01  E-value=8.4e-10  Score=120.49  Aligned_cols=104  Identities=24%  Similarity=0.340  Sum_probs=61.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+++..|..|.++++|+.|+|++|.+++..|..|++|++|++|+|++|++++..|..++++++|++|+|++
T Consensus        58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  137 (606)
T 3vq2_A           58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH  137 (606)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred             CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence            45555665555555555556666666666666666655555566666666666666666554445566666666666666


Q ss_pred             CCCCC-CCChhhhhhccccceeeecc
Q 009603          502 NTLSG-RVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g-~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |.+++ .+|..+++ +.+++.|++++
T Consensus       138 n~l~~~~lp~~~~~-l~~L~~L~Ls~  162 (606)
T 3vq2_A          138 NFIHSCKLPAYFSN-LTNLVHVDLSY  162 (606)
T ss_dssp             SCCCCCCCCGGGGT-CTTCCEEECCS
T ss_pred             CcccceechHhHhh-cCCCCEEEccC
Confidence            66654 45665544 34566666653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.00  E-value=1.2e-10  Score=116.65  Aligned_cols=105  Identities=18%  Similarity=0.156  Sum_probs=87.5

Q ss_pred             EEEEEEccCCCCcccCcccccCC-----CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCC--Ccccc--cCC
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IPESL--GQL  491 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~--iP~~l--~~l  491 (531)
                      .++.|+|++|.+++. |..+..+     ++|+.|+|++|.+.+..|..++.+++|+.|+|++|++.|.  +|..+  .++
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            478999999999988 7777777     8999999999999988888999999999999999998876  34455  889


Q ss_pred             CCCCEEeccCCCCCC--CCChhhhhhccccceeeecc
Q 009603          492 TALRRLNLNGNTLSG--RVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       492 ~~L~~L~L~~N~l~g--~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++|++|+|++|++++  .+|..+...+.+++.|++++
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~  237 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH  237 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence            999999999999983  34445555567889998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.00  E-value=1.1e-09  Score=110.18  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=86.8

Q ss_pred             CCCCccccccCCCC-----cceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (531)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  478 (531)
                      |.|..+.|+.....     ....++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..++.+++|+.|+|++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            56888888643221     1234788999999999888888999999999999999999888999999999999999999


Q ss_pred             cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +++ .+|..+.  ++|++|+|++|.+++ +|......+.+++.|+++
T Consensus       111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A          111 QLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             CCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECC
T ss_pred             cCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECC
Confidence            988 6665543  566667776666663 333322334455555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.00  E-value=3.8e-10  Score=108.32  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=76.7

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCc-cCccCCccccCCCCCCEEecCC-CcCCCCCcccccCCCCCCEEe
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTIASLEVLDLSY-NFFNGSIPESLGQLTALRRLN  498 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~  498 (531)
                      .++.|+|++|++++..+..+.++++|+.|+|++|. ++...+..|..+++|+.|+|++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            47788888888887777788888888888888886 7755556788888888888887 888866666778888888888


Q ss_pred             ccCCCCCCCCChhhhhhccccc---eeeec
Q 009603          499 LNGNTLSGRVPAALGGRLLHRA---SFKYV  525 (531)
Q Consensus       499 L~~N~l~g~iP~~~~~~~~~l~---~l~l~  525 (531)
                      |++|.+++ +|. +.. +.++.   .|+++
T Consensus       112 l~~n~l~~-lp~-~~~-l~~L~~L~~L~l~  138 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTK-VYSTDIFFILEIT  138 (239)
T ss_dssp             EEEECCCS-CCC-CTT-CCBCCSEEEEEEE
T ss_pred             CCCCCCcc-ccc-ccc-ccccccccEEECC
Confidence            88888874 765 332 33444   55554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.99  E-value=7.3e-10  Score=103.08  Aligned_cols=87  Identities=23%  Similarity=0.286  Sum_probs=80.1

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .|+.|+|++|.|++..+..|.+|++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+..+..+++|+.|+|+
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            37899999999999888899999999999999999998888899999999999999999996666679999999999999


Q ss_pred             CCCCCCC
Q 009603          501 GNTLSGR  507 (531)
Q Consensus       501 ~N~l~g~  507 (531)
                      +|.+...
T Consensus       135 ~N~~~C~  141 (193)
T 2wfh_A          135 ANPLYCD  141 (193)
T ss_dssp             SSCEECS
T ss_pred             CCCeecC
Confidence            9999754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.98  E-value=6.6e-10  Score=119.03  Aligned_cols=100  Identities=21%  Similarity=0.189  Sum_probs=68.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..|+++++|++|+|++|+++ .+|..  .+++|++|+|++
T Consensus        23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~   99 (520)
T 2z7x_B           23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF   99 (520)
T ss_dssp             CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred             ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence            566777777777666667777777777777777777666777777777777777777777 56655  667777777777


Q ss_pred             CCCCC-CCChhhhhhccccceeeec
Q 009603          502 NTLSG-RVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g-~iP~~~~~~~~~l~~l~l~  525 (531)
                      |.+++ .+|..++. +.+++.|+++
T Consensus       100 N~l~~~~~p~~~~~-l~~L~~L~L~  123 (520)
T 2z7x_B          100 NAFDALPICKEFGN-MSQLKFLGLS  123 (520)
T ss_dssp             SCCSSCCCCGGGGG-CTTCCEEEEE
T ss_pred             Cccccccchhhhcc-CCcceEEEec
Confidence            77765 45666654 3456666665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.97  E-value=7.9e-10  Score=122.49  Aligned_cols=84  Identities=24%  Similarity=0.313  Sum_probs=41.4

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..+++|++|++|+|++|++++..+..|+++++|++|+|++
T Consensus        27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~  106 (680)
T 1ziw_A           27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS  106 (680)
T ss_dssp             CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence            44555555555554444455555555555555555544444444455555555555554422222344444444444444


Q ss_pred             CCCC
Q 009603          502 NTLS  505 (531)
Q Consensus       502 N~l~  505 (531)
                      |.++
T Consensus       107 n~l~  110 (680)
T 1ziw_A          107 NSIQ  110 (680)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            4444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.97  E-value=6.2e-10  Score=121.68  Aligned_cols=105  Identities=15%  Similarity=0.143  Sum_probs=86.5

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .|+.|+|++|.+.+..+..+..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.|++..+..|+++++|++|+|+
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            46788999999988888888999999999999999998878788899999999999999985544556889999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++..|..++. +.++..|+++.
T Consensus       156 ~N~l~~~~~~~~~~-l~~L~~L~L~~  180 (597)
T 3oja_B          156 NNNLERIEDDTFQA-TTSLQNLQLSS  180 (597)
T ss_dssp             SSCCCBCCTTTTTT-CTTCCEEECTT
T ss_pred             CCcCCCCChhhhhc-CCcCcEEECcC
Confidence            99998766666654 56788888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.96  E-value=6.7e-10  Score=126.44  Aligned_cols=105  Identities=20%  Similarity=0.209  Sum_probs=68.2

Q ss_pred             EEEEEccCCCCcccC-cccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCccc--ccCCCCCCEEe
Q 009603          422 IDGLGLDNQGLRGFL-PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES--LGQLTALRRLN  498 (531)
Q Consensus       422 l~~L~L~~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~  498 (531)
                      |+.|+|++|.+.+.+ |..+.+|++|+.|+|++|.+.+..|..|++|++|+.|+|++|++++.+|..  ++++++|++|+
T Consensus        50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~  129 (844)
T 3j0a_A           50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD  129 (844)
T ss_dssp             CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred             CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence            555666666554444 455667777777777777777666777777777777777777777666554  66777777777


Q ss_pred             ccCCCCCCCCChhhhhhccccceeeecc
Q 009603          499 LNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       499 L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |++|.+++..|......+.+|+.|+++.
T Consensus       130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A          130 LSKNQIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             EESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             CCCCcccccccchhHhhCCCCCEEECCC
Confidence            7777776554433334455667776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.96  E-value=9.9e-10  Score=102.27  Aligned_cols=103  Identities=22%  Similarity=0.278  Sum_probs=89.0

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+.  .++.+..+++|+.|+|++|.+++..|..++.|++|+.|+|++|++++..|..++++++|++|+|+
T Consensus        67 ~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  144 (197)
T 4ezg_A           67 NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS  144 (197)
T ss_dssp             TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred             CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence            3789999999665  34579999999999999999999889999999999999999999998889999999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeeccc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~~  527 (531)
                      +|.+.+.+| .+.. +.+++.|++++.
T Consensus       145 ~n~~i~~~~-~l~~-l~~L~~L~l~~n  169 (197)
T 4ezg_A          145 YNGAITDIM-PLKT-LPELKSLNIQFD  169 (197)
T ss_dssp             SCTBCCCCG-GGGG-CSSCCEEECTTB
T ss_pred             CCCCccccH-hhcC-CCCCCEEECCCC
Confidence            998444787 4544 567899988753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.94  E-value=1.6e-09  Score=117.41  Aligned_cols=102  Identities=25%  Similarity=0.234  Sum_probs=85.4

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+.+..+..+.++++|+.|+|++|.+++..|..|.++++|++|+|++|+++ .+|..  .+++|++|+|+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            4788999999999888888999999999999999999888888999999999999999988 67776  78899999999


Q ss_pred             CCCCCC-CCChhhhhhccccceeeecc
Q 009603          501 GNTLSG-RVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g-~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|++++ .+|..+++ +.+++.|+++.
T Consensus       130 ~N~l~~l~~p~~~~~-l~~L~~L~L~~  155 (562)
T 3a79_B          130 FNDFDVLPVCKEFGN-LTKLTFLGLSA  155 (562)
T ss_dssp             SSCCSBCCCCGGGGG-CTTCCEEEEEC
T ss_pred             CCCccccCchHhhcc-cCcccEEecCC
Confidence            999885 44566655 45778887764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.93  E-value=3.2e-10  Score=113.58  Aligned_cols=106  Identities=19%  Similarity=0.182  Sum_probs=89.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCcc--CCccc--cCCCCCCEEecCCCcCCC--CCc-ccccCCCC
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA--IPSSL--GTIASLEVLDLSYNFFNG--SIP-ESLGQLTA  493 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~--ip~~l--~~l~~L~~L~Ls~N~l~g--~iP-~~l~~l~~  493 (531)
                      .++.|+|++|.+.+..+..+.++++|+.|+|++|.+.|.  +|..+  +.+++|+.|+|++|++++  .++ ..+.++++
T Consensus       150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  229 (312)
T 1wwl_A          150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ  229 (312)
T ss_dssp             TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred             CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence            488999999999999889999999999999999999876  34455  899999999999999993  333 34468899


Q ss_pred             CCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          494 LRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       494 L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |+.|+|++|++++.+|......+.+++.|++++
T Consensus       230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~  262 (312)
T 1wwl_A          230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF  262 (312)
T ss_dssp             CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred             CCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence            999999999999888655555567889999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.93  E-value=8.9e-10  Score=118.74  Aligned_cols=88  Identities=20%  Similarity=0.285  Sum_probs=44.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-CCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|.+++..|..+.++++|+.|+|++|.+++..|..++++++|+.|+|++|++++ .+|..++++++|++|+|+
T Consensus        52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  131 (549)
T 2z81_A           52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG  131 (549)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred             ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence            4455555555555544555555555555555555554444445555555555555555554 234445555555555555


Q ss_pred             CCCCCCCCC
Q 009603          501 GNTLSGRVP  509 (531)
Q Consensus       501 ~N~l~g~iP  509 (531)
                      +|.+.+.+|
T Consensus       132 ~n~~~~~~~  140 (549)
T 2z81_A          132 NVETFSEIR  140 (549)
T ss_dssp             ESSSCCEEC
T ss_pred             CCccccccC
Confidence            554333444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.92  E-value=2.1e-09  Score=98.10  Aligned_cols=99  Identities=19%  Similarity=0.161  Sum_probs=82.6

Q ss_pred             EEEEEccCCCCcccCcccccCCC-CCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLR-HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|+++. ++. +..+. +|+.|+|++|.+++.  ..+..+++|+.|+|++|++++..|..+..+++|++|+|+
T Consensus        21 L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           21 DRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             CEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             ceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            7899999999995 444 55555 999999999999975  689999999999999999996544555899999999999


Q ss_pred             CCCCCCCCCh--hhhhhccccceeeecc
Q 009603          501 GNTLSGRVPA--ALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~--~~~~~~~~l~~l~l~~  526 (531)
                      +|+++ .+|.  .+. .+.++..|++..
T Consensus        97 ~N~i~-~~~~~~~l~-~l~~L~~L~l~~  122 (176)
T 1a9n_A           97 NNSLV-ELGDLDPLA-SLKSLTYLCILR  122 (176)
T ss_dssp             SCCCC-CGGGGGGGG-GCTTCCEEECCS
T ss_pred             CCcCC-cchhhHhhh-cCCCCCEEEecC
Confidence            99996 7886  554 456788888874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.91  E-value=1.1e-09  Score=113.00  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=77.0

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|.+.+..+..+..+++|+.|+|++|.+++..|..++.+++|+.|+|++|+++ .+|. .+.++++|++|+|
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence            3667888888887777777888888888888888888777777788888888888888888 4454 3577888888888


Q ss_pred             cCCCCCCCCChhhhhhccccceeeecc
Q 009603          500 NGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++|.+++..|..+. .+.+++.|+++.
T Consensus       149 ~~n~l~~~~~~~~~-~l~~L~~L~l~~  174 (390)
T 3o6n_A          149 SNNNLERIEDDTFQ-ATTSLQNLQLSS  174 (390)
T ss_dssp             CSSCCCBCCTTTTS-SCTTCCEEECCS
T ss_pred             CCCccCccChhhcc-CCCCCCEEECCC
Confidence            88888754454453 345677777764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.91  E-value=2.8e-09  Score=109.95  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=85.4

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+.+..|..+.++++|+.|+|++|.++...+..+.++++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            48899999999999888889999999999999999994433446899999999999999998888889999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|.+++ ++.   ..+.++..|+++
T Consensus       174 ~n~l~~-~~~---~~l~~L~~L~l~  194 (390)
T 3o6n_A          174 SNRLTH-VDL---SLIPSLFHANVS  194 (390)
T ss_dssp             SSCCSB-CCG---GGCTTCSEEECC
T ss_pred             CCcCCc-ccc---ccccccceeecc
Confidence            999994 442   223455666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.91  E-value=2.5e-09  Score=116.87  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=86.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .|+.|+|++|.+++..|..+++|++|+.|+|++|.+++..+..|+.+++|+.|+|++|.+++..|..++++++|+.|+|+
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            48899999999999888889999999999999999996555567999999999999999999888899999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|.+++ +|.   ..+.++..|+++
T Consensus       180 ~N~l~~-~~~---~~l~~L~~L~l~  200 (597)
T 3oja_B          180 SNRLTH-VDL---SLIPSLFHANVS  200 (597)
T ss_dssp             TSCCSB-CCG---GGCTTCSEEECC
T ss_pred             CCCCCC-cCh---hhhhhhhhhhcc
Confidence            999995 442   223455666655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.90  E-value=1.3e-09  Score=116.72  Aligned_cols=102  Identities=20%  Similarity=0.264  Sum_probs=72.0

Q ss_pred             EEEEEEccCCCCcc--cCcccccCCCCCCEEEccCCccCccCCcc-ccCCCCCCEEecCCCcCCCCCcccccCCCCCCEE
Q 009603          421 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL  497 (531)
Q Consensus       421 ~l~~L~L~~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  497 (531)
                      .++.|+|++|.+.+  .+|..+.++++|+.|+|++|.+++.+|.. +..+++|+.|+|++|++++.+|..+.  ++|+.|
T Consensus       349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L  426 (520)
T 2z7x_B          349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVL  426 (520)
T ss_dssp             SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEE
T ss_pred             CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEE
Confidence            36677777777775  45566777777777777777777656653 66677777777777777776666553  678888


Q ss_pred             eccCCCCCCCCChhhhhhccccceeeecc
Q 009603          498 NLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       498 ~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|++|+++ .+|..++ .+.+++.|++++
T Consensus       427 ~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~  453 (520)
T 2z7x_B          427 DLHSNKIK-SIPKQVV-KLEALQELNVAS  453 (520)
T ss_dssp             ECCSSCCC-CCCGGGG-GCTTCCEEECCS
T ss_pred             ECCCCccc-ccchhhh-cCCCCCEEECCC
Confidence            88888887 7887776 456777777764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.90  E-value=2.5e-09  Score=112.75  Aligned_cols=101  Identities=23%  Similarity=0.225  Sum_probs=52.2

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~L~  500 (531)
                      |+.|+|++|.+++..+..+..+++|+.|+|++|.+....+..+.++++|+.|+|++|+..+.+|. .+.++++|+.|+|+
T Consensus       125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  204 (452)
T 3zyi_A          125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG  204 (452)
T ss_dssp             CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence            45555555555544444455555555555555555544344455555555555555333333332 45556666666666


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|+++ .+|. + ..+.+++.|+++
T Consensus       205 ~n~l~-~~~~-~-~~l~~L~~L~Ls  226 (452)
T 3zyi_A          205 MCNIK-DMPN-L-TPLVGLEELEMS  226 (452)
T ss_dssp             TSCCS-SCCC-C-TTCTTCCEEECT
T ss_pred             CCccc-cccc-c-cccccccEEECc
Confidence            66666 3443 2 223455666655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.89  E-value=2.2e-09  Score=122.20  Aligned_cols=106  Identities=20%  Similarity=0.205  Sum_probs=93.0

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCcc--ccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEE
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSS--LGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRL  497 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~--l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L  497 (531)
                      .|+.|+|++|.+.+..|..+.+|++|+.|+|++|.+++.+|..  +++|++|+.|+|++|.+.+..| ..++++++|++|
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            4889999999999999999999999999999999999877765  8999999999999999997655 578999999999


Q ss_pred             eccCCCCCCCCChhhhhhc-cccceeeecc
Q 009603          498 NLNGNTLSGRVPAALGGRL-LHRASFKYVW  526 (531)
Q Consensus       498 ~L~~N~l~g~iP~~~~~~~-~~l~~l~l~~  526 (531)
                      +|++|.+++..|..+..+. .++..|+++.
T Consensus       154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             EEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             ECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            9999999988888887652 5677777764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.89  E-value=2.3e-09  Score=117.07  Aligned_cols=93  Identities=17%  Similarity=0.099  Sum_probs=54.3

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..++++++|+.|+|++|++++..+..+..+++|++|+|++
T Consensus        83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  162 (606)
T 3t6q_A           83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN  162 (606)
T ss_dssp             CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred             cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence            55666666666666666666666666666666666654455566666666666666666652222233366666666666


Q ss_pred             CCCCCCCChhhhh
Q 009603          502 NTLSGRVPAALGG  514 (531)
Q Consensus       502 N~l~g~iP~~~~~  514 (531)
                      |.+++..|..++.
T Consensus       163 n~l~~~~~~~~~~  175 (606)
T 3t6q_A          163 NAIHYLSKEDMSS  175 (606)
T ss_dssp             SCCCEECHHHHHT
T ss_pred             CcccccChhhhhh
Confidence            6666444444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.89  E-value=3.2e-09  Score=112.43  Aligned_cols=104  Identities=18%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      |+.|+|++|.+.+..+..+.++++|+.|+|++|.+.+..|..|..+++|+.|+|++|++++..+..+.++++|+.|+|++
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence            66777777777777777777777777777777777776677777777777777777777765555677777777777777


Q ss_pred             CCCCCCCChhhhhhccccceeeecc
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |.+.+..+..+ ..+.+++.|+++.
T Consensus       186 n~i~~~~~~~~-~~l~~L~~L~l~~  209 (477)
T 2id5_A          186 LNINAIRDYSF-KRLYRLKVLEISH  209 (477)
T ss_dssp             CCCCEECTTCS-CSCTTCCEEEEEC
T ss_pred             CcCcEeChhhc-ccCcccceeeCCC
Confidence            77775433333 3345677777664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.88  E-value=3.1e-09  Score=111.62  Aligned_cols=101  Identities=26%  Similarity=0.283  Sum_probs=51.7

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~L~  500 (531)
                      |+.|+|++|.+++..+..+..+++|+.|+|++|.+....+..|.++++|+.|+|++|+..+.+|. .|.++++|+.|+|+
T Consensus       114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  193 (440)
T 3zyj_A          114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA  193 (440)
T ss_dssp             CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred             CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence            44555555555544444455555555555555555544444455555555555555333323332 45556666666666


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|+++ .+|. + ..+.+++.|+++
T Consensus       194 ~n~l~-~~~~-~-~~l~~L~~L~Ls  215 (440)
T 3zyj_A          194 MCNLR-EIPN-L-TPLIKLDELDLS  215 (440)
T ss_dssp             TSCCS-SCCC-C-TTCSSCCEEECT
T ss_pred             CCcCc-cccc-c-CCCcccCEEECC
Confidence            66665 4553 2 223455566555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.87  E-value=1.3e-09  Score=108.95  Aligned_cols=105  Identities=15%  Similarity=0.083  Sum_probs=86.6

Q ss_pred             EEEEEEccCCCCcccCc----ccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCC--Cc--ccccCCC
Q 009603          421 VIDGLGLDNQGLRGFLP----NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IP--ESLGQLT  492 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p----~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~--iP--~~l~~l~  492 (531)
                      .++.|+|++|.+.+..+    ..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|++.+.  ++  ..++.++
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  197 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP  197 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence            47889999999998665    3456899999999999999988889999999999999999998763  33  3347899


Q ss_pred             CCCEEeccCCCCCCCCChh---hhhhccccceeeecc
Q 009603          493 ALRRLNLNGNTLSGRVPAA---LGGRLLHRASFKYVW  526 (531)
Q Consensus       493 ~L~~L~L~~N~l~g~iP~~---~~~~~~~l~~l~l~~  526 (531)
                      +|++|+|++|+++ .+|..   +...+.+++.|++++
T Consensus       198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT
T ss_pred             CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC
Confidence            9999999999997 45543   445567899999885

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.87  E-value=2.6e-09  Score=115.41  Aligned_cols=103  Identities=21%  Similarity=0.288  Sum_probs=69.7

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccC-ccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|.+.+..|..+.++++|+.|+|++|.+. +.+|..+..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            566777777777766666777777777777777776 5667677777777777777777776667677777777777777


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|++++..|..+. .+.+++.|+++
T Consensus       503 ~n~l~~~~~~~~~-~l~~L~~L~l~  526 (570)
T 2z63_A          503 SNQLKSVPDGIFD-RLTSLQKIWLH  526 (570)
T ss_dssp             SSCCSCCCTTTTT-TCTTCCEEECC
T ss_pred             CCcCCCCCHHHhh-cccCCcEEEec
Confidence            7777754444343 34456666665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.87  E-value=3e-09  Score=114.92  Aligned_cols=105  Identities=19%  Similarity=0.277  Sum_probs=85.1

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..|+.+++|+.|+|++|++++..+..++++++|++|+|+
T Consensus        53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  132 (570)
T 2z63_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (570)
T ss_dssp             SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred             CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence            47788888888887777778888888888888888887777788888888888888888885555568888999999999


Q ss_pred             CCCCCC-CCChhhhhhccccceeeecc
Q 009603          501 GNTLSG-RVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g-~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++ .+|..+++ +.+++.|++++
T Consensus       133 ~n~l~~~~lp~~~~~-l~~L~~L~l~~  158 (570)
T 2z63_A          133 HNLIQSFKLPEYFSN-LTNLEHLDLSS  158 (570)
T ss_dssp             SSCCCCCCCCGGGGG-CTTCCEEECTT
T ss_pred             CCccceecChhhhcc-cCCCCEEeCcC
Confidence            998886 57887765 46788888874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.87  E-value=1.8e-09  Score=115.07  Aligned_cols=104  Identities=16%  Similarity=0.121  Sum_probs=77.2

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc----------------cccCCCCCCEEecCCCcCCCCC
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS----------------SLGTIASLEVLDLSYNFFNGSI  484 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~----------------~l~~l~~L~~L~Ls~N~l~g~i  484 (531)
                      .|+.|+|++|.+++.+|  +..+++|+.|+|++|.+++..+.                ....+++|+.|+|++|.+++..
T Consensus        59 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~  136 (487)
T 3oja_A           59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR  136 (487)
T ss_dssp             TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGG
T ss_pred             CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCC
Confidence            37889999999987665  78888888888887777643211                0123566777888888888777


Q ss_pred             cccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       485 P~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |..++.+++|+.|+|++|.+++.+|..+...+.++..|++++
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            778888888888888888888877777776666777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.86  E-value=4.5e-09  Score=105.80  Aligned_cols=84  Identities=25%  Similarity=0.319  Sum_probs=67.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|+|++
T Consensus       194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence            667888888888777777888888888888888888777777788888888888888887 7777788888888888888


Q ss_pred             CCCCC
Q 009603          502 NTLSG  506 (531)
Q Consensus       502 N~l~g  506 (531)
                      |++++
T Consensus       273 N~i~~  277 (330)
T 1xku_A          273 NNISA  277 (330)
T ss_dssp             SCCCC
T ss_pred             CcCCc
Confidence            88874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.85  E-value=7.7e-10  Score=110.58  Aligned_cols=101  Identities=22%  Similarity=0.196  Sum_probs=79.5

Q ss_pred             EEEEEEccCCCCccc--Cc--ccccCCCCCCEEEccCCccCccCCc----cccCCCCCCEEecCCCcCCCCCcccccCC-
Q 009603          421 VIDGLGLDNQGLRGF--LP--NGISKLRHLQSINLSGNSIRGAIPS----SLGTIASLEVLDLSYNFFNGSIPESLGQL-  491 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~--~p--~~l~~L~~L~~L~Ls~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-  491 (531)
                      .++.|+|++|.+.+.  ++  ..+..+++|+.|+|++|.++ .++.    .++.+++|+.|+|++|++++.+|..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            378899999988753  22  23467888999999999987 3333    25778999999999999998888877776 


Q ss_pred             --CCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          492 --TALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       492 --~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                        ++|++|+|++|+++ .+|..+.   .+++.|++++
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~  281 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSS  281 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCS
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCC
Confidence              69999999999999 8888764   5788888874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.85  E-value=2.4e-09  Score=116.05  Aligned_cols=104  Identities=23%  Similarity=0.252  Sum_probs=88.7

Q ss_pred             eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCc--cCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCE
Q 009603          420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRR  496 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~  496 (531)
                      ..++.|+|++|.+++.+|..+.++++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.+|. .+..+++|+.
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            357899999999999889999999999999999999996  4456789999999999999999986776 4788999999


Q ss_pred             EeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          497 LNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       497 L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |+|++|++++.+|..+.   .+++.|++++
T Consensus       433 L~l~~n~l~~~~~~~l~---~~L~~L~L~~  459 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP---PKVKVLDLHN  459 (562)
T ss_dssp             EECCSSCCCGGGGSSCC---TTCSEEECCS
T ss_pred             EECCCCCCCcchhhhhc---CcCCEEECCC
Confidence            99999999988877653   5678888774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.85  E-value=4.1e-09  Score=116.72  Aligned_cols=106  Identities=20%  Similarity=0.159  Sum_probs=89.8

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|+++++|+.|+|++|.+++..|..++++++|++|+|+
T Consensus        74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  153 (680)
T 1ziw_A           74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS  153 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred             CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence            37889999999987666679999999999999999987777889999999999999999998888889999999999999


Q ss_pred             CCCCCCCCChhhhh-hccccceeeecc
Q 009603          501 GNTLSGRVPAALGG-RLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~-~~~~l~~l~l~~  526 (531)
                      +|.+++..|..+.. ...+++.|++++
T Consensus       154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          154 NNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             SSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             CCcccccCHHHhhccccccccEEECCC
Confidence            99999766665543 235788888874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.84  E-value=4.5e-09  Score=111.98  Aligned_cols=101  Identities=20%  Similarity=0.126  Sum_probs=75.7

Q ss_pred             EEEEEEccCCCCcccCccccc-CCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. | .+..+++|+.|+|++|.|++. |..+..+++|+.|+|
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L  221 (487)
T 3oja_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISL  221 (487)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEEC
T ss_pred             CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEe
Confidence            478888888888887777775 688888888888888865 2 334588888888888888864 444788888888888


Q ss_pred             cCCCCCCCCChhhhhhccccceeeecc
Q 009603          500 NGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++|.++ .+|..+.. +.++..|++..
T Consensus       222 s~N~l~-~lp~~l~~-l~~L~~L~l~~  246 (487)
T 3oja_A          222 RNNKLV-LIEKALRF-SQNLEHFDLRG  246 (487)
T ss_dssp             TTSCCC-EECTTCCC-CTTCCEEECTT
T ss_pred             cCCcCc-ccchhhcc-CCCCCEEEcCC
Confidence            888888 47776543 45677777763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.84  E-value=2.6e-09  Score=107.65  Aligned_cols=83  Identities=20%  Similarity=0.276  Sum_probs=41.4

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccC------CCCCC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ------LTALR  495 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~------l~~L~  495 (531)
                      ++.|+|++|.+++..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..+..+..      ..+|+
T Consensus       219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~  297 (332)
T 2ft3_A          219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN  297 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred             CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence            444555555555544445555555555555555555 45555555555555555555555333333332      23445


Q ss_pred             EEeccCCCCC
Q 009603          496 RLNLNGNTLS  505 (531)
Q Consensus       496 ~L~L~~N~l~  505 (531)
                      .|+|++|.+.
T Consensus       298 ~L~l~~N~~~  307 (332)
T 2ft3_A          298 GISLFNNPVP  307 (332)
T ss_dssp             EEECCSSSSC
T ss_pred             ceEeecCccc
Confidence            5555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.83  E-value=2.9e-09  Score=102.11  Aligned_cols=101  Identities=15%  Similarity=0.223  Sum_probs=76.5

Q ss_pred             EEEEEccC-CCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCC---EEecCCC-cCCCCCcccccCCCCCC-
Q 009603          422 IDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE---VLDLSYN-FFNGSIPESLGQLTALR-  495 (531)
Q Consensus       422 l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~---~L~Ls~N-~l~g~iP~~l~~l~~L~-  495 (531)
                      ++.|+|++ |.+++..+..+.++++|+.|+|++|.+++ +|. +..+++|+   .|+|++| ++++..+..+.++++|+ 
T Consensus        82 L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~  159 (239)
T 2xwt_C           82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL  159 (239)
T ss_dssp             CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred             CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence            67788887 88877666777888888888888888875 665 77777777   8888888 77755556678888888 


Q ss_pred             EEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          496 RLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       496 ~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      .|+|++|.++ .+|...+.. .+++.|++..
T Consensus       160 ~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          160 TLKLYNNGFT-SVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEECCSCCCC-EECTTTTTT-CEEEEEECTT
T ss_pred             EEEcCCCCCc-ccCHhhcCC-CCCCEEEcCC
Confidence            8888888888 777765555 5677777664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.82  E-value=4.2e-09  Score=107.08  Aligned_cols=102  Identities=19%  Similarity=0.280  Sum_probs=57.2

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc--cccCCCCCCEEecCCCc-CCCCCcccccCCCCCCEEe
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNF-FNGSIPESLGQLTALRRLN  498 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L~  498 (531)
                      ++.|+|++|.+++..+..+.++++|+.|+|++|.++ .+|.  .+..+++|+.|+|++|+ +.+..|..+.++++|+.|+
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            556666666665444444566666666666666665 3333  45566666666666653 4433445566666666666


Q ss_pred             ccCCCCCCCCChhhhhhccccceeeec
Q 009603          499 LNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       499 L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |++|.+++..|..+.. +.+++.|+++
T Consensus       181 l~~n~l~~~~~~~l~~-l~~L~~L~l~  206 (353)
T 2z80_A          181 IDASDLQSYEPKSLKS-IQNVSHLILH  206 (353)
T ss_dssp             EEETTCCEECTTTTTT-CSEEEEEEEE
T ss_pred             CCCCCcCccCHHHHhc-cccCCeecCC
Confidence            6666666555555543 3345555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.81  E-value=3e-09  Score=115.27  Aligned_cols=87  Identities=24%  Similarity=0.311  Sum_probs=42.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.|+ .+|   ..+++|+.|+|++|.|++ +|. +..  +|+.|+|++|+|++ +|.   .+++|+.|+|++
T Consensus        82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A           82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADN  149 (571)
T ss_dssp             CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence            344444444444 233   234455555555555553 444 333  55555555555554 444   345566666666


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |.|++ +|.    .+.++..|+++
T Consensus       150 N~l~~-lp~----~l~~L~~L~Ls  168 (571)
T 3cvr_A          150 NQLTM-LPE----LPTSLEVLSVR  168 (571)
T ss_dssp             SCCSC-CCC----CCTTCCEEECC
T ss_pred             CccCc-CCC----cCCCcCEEECC
Confidence            66553 554    23445555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.77  E-value=2.8e-09  Score=106.94  Aligned_cols=104  Identities=16%  Similarity=0.121  Sum_probs=76.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc----------------cccCCCCCCEEecCCCcCCCCC
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS----------------SLGTIASLEVLDLSYNFFNGSI  484 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~----------------~l~~l~~L~~L~Ls~N~l~g~i  484 (531)
                      .++.|+|++|.+++..+  +..+++|+.|+|++|.+++..+.                ....+++|+.|+|++|++++..
T Consensus        59 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~  136 (317)
T 3o53_A           59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR  136 (317)
T ss_dssp             TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGG
T ss_pred             cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCcc
Confidence            37899999999987665  88999999999999988743210                0123456777777777777666


Q ss_pred             cccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603          485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       485 P~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |..++.+++|++|+|++|.+++..|..+...+.+++.|++++
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            667777888888888888888666666665566777777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.73  E-value=7.2e-09  Score=105.45  Aligned_cols=120  Identities=17%  Similarity=0.127  Sum_probs=91.9

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc-cccCCCCCCE-EecC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEV-LDLS  476 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~-L~Ls  476 (531)
                      |.|..|.|+..+...     +..++.|+|++|+|+...+..|.+|++|+.|+|++|.+.+.+|. .|.+|++|+. +.++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            578889997543221     13478999999999976667899999999999999999877774 5788888775 6677


Q ss_pred             CCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeee
Q 009603          477 YNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKY  524 (531)
Q Consensus       477 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l  524 (531)
                      .|+++...|..|..+++|++|++++|++.+ +|+........+..|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEE
T ss_pred             CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhh
Confidence            899997778889999999999999999984 44433222333444544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.72  E-value=3e-08  Score=98.18  Aligned_cols=78  Identities=32%  Similarity=0.549  Sum_probs=38.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+++.  +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++
T Consensus       114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK  187 (291)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence            44455555555442  2344555555555555555532  344555555555555555553322  45555555555555


Q ss_pred             CCCC
Q 009603          502 NTLS  505 (531)
Q Consensus       502 N~l~  505 (531)
                      |.++
T Consensus       188 N~i~  191 (291)
T 1h6t_A          188 NHIS  191 (291)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            5555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.71  E-value=1.7e-08  Score=101.12  Aligned_cols=101  Identities=20%  Similarity=0.139  Sum_probs=85.3

Q ss_pred             EEEEEEccCCCCcccCccccc-CCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|.+.+..+..+. .+++|+.|+|++|.+++. | ....+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L  221 (317)
T 3o53_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL  221 (317)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred             CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence            589999999999988777764 799999999999999955 3 34469999999999999995 5556899999999999


Q ss_pred             cCCCCCCCCChhhhhhccccceeeecc
Q 009603          500 NGNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      ++|+++ .+|..+.. +.+++.|+++.
T Consensus       222 ~~N~l~-~l~~~~~~-l~~L~~L~l~~  246 (317)
T 3o53_A          222 RNNKLV-LIEKALRF-SQNLEHFDLRG  246 (317)
T ss_dssp             TTSCCC-EECTTCCC-CTTCCEEECTT
T ss_pred             cCCccc-chhhHhhc-CCCCCEEEccC
Confidence            999999 68887644 56788888874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.68  E-value=4.9e-08  Score=96.63  Aligned_cols=97  Identities=26%  Similarity=0.314  Sum_probs=65.9

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++.  +.+..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|++++.  ..+..+++|+.|+|+
T Consensus        91 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~  164 (291)
T 1h6t_A           91 NLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  164 (291)
T ss_dssp             TCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence            366777777777652  3377777777777777777743  3567777777777777777753  457777888888888


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|++++. +. + ..+.+++.|++++
T Consensus       165 ~N~l~~~-~~-l-~~l~~L~~L~L~~  187 (291)
T 1h6t_A          165 DNQISDI-VP-L-AGLTKLQNLYLSK  187 (291)
T ss_dssp             SSCCCCC-GG-G-TTCTTCCEEECCS
T ss_pred             CCccccc-hh-h-cCCCccCEEECCC
Confidence            8888743 33 3 3345677777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.67  E-value=6.5e-08  Score=96.55  Aligned_cols=97  Identities=24%  Similarity=0.365  Sum_probs=61.3

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++.  +.+..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|++++. |. +..+++|+.|+|+
T Consensus        86 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~  159 (308)
T 1h6u_A           86 KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIG  159 (308)
T ss_dssp             SCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECC
T ss_pred             CCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEcc
Confidence            366677777776653  256667777777777777764 33 266777777777777777643 32 6677777777777


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++ +|. + ..+.+++.|++++
T Consensus       160 ~n~l~~-~~~-l-~~l~~L~~L~l~~  182 (308)
T 1h6u_A          160 NAQVSD-LTP-L-ANLSKLTTLKADD  182 (308)
T ss_dssp             SSCCCC-CGG-G-TTCTTCCEEECCS
T ss_pred             CCcCCC-Chh-h-cCCCCCCEEECCC
Confidence            777763 444 3 3345666666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.66  E-value=5e-08  Score=97.39  Aligned_cols=97  Identities=20%  Similarity=0.271  Sum_probs=78.7

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+  +..+++|+.|+|++|.+++ ++. +..+++|+.|+|++|++++. |. +..+++|++|+|+
T Consensus       130 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~  203 (308)
T 1h6u_A          130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLK  203 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECT
T ss_pred             CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEcc
Confidence            47889999999987644  8899999999999999985 443 88999999999999999854 43 7889999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|++++ +|+ + ..+.+++.|+++.
T Consensus       204 ~N~l~~-~~~-l-~~l~~L~~L~l~~  226 (308)
T 1h6u_A          204 NNQISD-VSP-L-ANTSNLFIVTLTN  226 (308)
T ss_dssp             TSCCCB-CGG-G-TTCTTCCEEEEEE
T ss_pred             CCccCc-ccc-c-cCCCCCCEEEccC
Confidence            999995 443 4 4456788888763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.66  E-value=5.2e-08  Score=106.41  Aligned_cols=95  Identities=31%  Similarity=0.512  Sum_probs=50.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      |+.|+|++|.+.+.  +.+..|++|+.|+|++|.+++.  ..+..|++|+.|+|++|+|++..|  +..+++|+.|+|++
T Consensus       111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK  184 (605)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence            45555666655542  3355555666666666665543  355555666666666666654444  55556666666666


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+|++ +| .+.. +.+|..|+|+
T Consensus       185 N~i~~-l~-~l~~-l~~L~~L~L~  205 (605)
T 1m9s_A          185 NHISD-LR-ALAG-LKNLDVLELF  205 (605)
T ss_dssp             SCCCB-CG-GGTT-CTTCSEEECC
T ss_pred             CCCCC-Ch-HHcc-CCCCCEEEcc
Confidence            65553 33 2322 3445555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.65  E-value=7.3e-08  Score=93.96  Aligned_cols=80  Identities=26%  Similarity=0.497  Sum_probs=41.2

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc--------------------cccCCCCCCEEecCCCcCC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS--------------------SLGTIASLEVLDLSYNFFN  481 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~--------------------~l~~l~~L~~L~Ls~N~l~  481 (531)
                      ++.|+|++|.+++..+  +.++++|+.|+|++|.+++ +|.                    .+..+++|+.|+|++|+++
T Consensus        65 L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC
T ss_pred             CCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCC
Confidence            4555555555554333  5555555555555555553 222                    3445555555555555555


Q ss_pred             CCCcccccCCCCCCEEeccCCCCCC
Q 009603          482 GSIPESLGQLTALRRLNLNGNTLSG  506 (531)
Q Consensus       482 g~iP~~l~~l~~L~~L~L~~N~l~g  506 (531)
                      + +| .+..+++|+.|+|++|++++
T Consensus       142 ~-~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          142 S-IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             B-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             C-Ch-HHccCCCCCEEECCCCcCcc
Confidence            3 22 34555555555555555553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.64  E-value=5.6e-08  Score=106.17  Aligned_cols=97  Identities=29%  Similarity=0.377  Sum_probs=74.1

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .|+.|+|++|.|.+.  +.+..|++|+.|+|++|.+.+ + +.+..|++|+.|+|++|+|++.  ..+..|++|+.|+|+
T Consensus        88 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           88 NLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  161 (605)
T ss_dssp             TCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred             CCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence            467788888887753  367788888888888888875 3 3577888888888888888854  567888889999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|+|++..|  + ..+.+|..|+|+.
T Consensus       162 ~N~l~~~~~--l-~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          162 DNQISDIVP--L-AGLTKLQNLYLSK  184 (605)
T ss_dssp             SSCCCCCGG--G-TTCTTCCEEECCS
T ss_pred             CCcCCCchh--h-ccCCCCCEEECcC
Confidence            998886555  4 4456788888874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.63  E-value=4.6e-08  Score=98.87  Aligned_cols=99  Identities=25%  Similarity=0.334  Sum_probs=82.4

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++.  +.+..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus       244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred             CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence            378899999998864  5688899999999999999854  468889999999999999998888889999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++..|  + ..+.+++.|++++
T Consensus       320 ~n~l~~~~~--~-~~l~~L~~L~l~~  342 (347)
T 4fmz_A          320 QNHITDIRP--L-ASLSKMDSADFAN  342 (347)
T ss_dssp             SSSCCCCGG--G-GGCTTCSEESSSC
T ss_pred             CCccccccC--h-hhhhccceeehhh
Confidence            999996555  4 3456788888764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.63  E-value=3.4e-09  Score=106.66  Aligned_cols=84  Identities=24%  Similarity=0.283  Sum_probs=36.7

Q ss_pred             EEEEEccCCCCccc-CcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC-cCCC-CCcccccCCCCCCEEe
Q 009603          422 IDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNG-SIPESLGQLTALRRLN  498 (531)
Q Consensus       422 l~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~L~  498 (531)
                      ++.|+|++|.+.+. ++..+..+++|+.|+|++|.+++..|..++++++|+.|+|++| .+++ .+|..+.++++|++|+
T Consensus        95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~  174 (336)
T 2ast_B           95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN  174 (336)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence            34444444444433 3344444444444444444444444444444444444444444 3333 1333344444444444


Q ss_pred             ccCC-CCC
Q 009603          499 LNGN-TLS  505 (531)
Q Consensus       499 L~~N-~l~  505 (531)
                      |++| .++
T Consensus       175 l~~~~~l~  182 (336)
T 2ast_B          175 LSWCFDFT  182 (336)
T ss_dssp             CCCCTTCC
T ss_pred             CCCCCCcC
Confidence            4444 443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.61  E-value=8e-10  Score=103.00  Aligned_cols=100  Identities=20%  Similarity=0.258  Sum_probs=83.2

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+.+ +| .+.++++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus        49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred             CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence            37889999999987 56 8899999999999999999 788888888999999999999995 66 68889999999999


Q ss_pred             CCCCCCCCCh-hhhhhccccceeeecc
Q 009603          501 GNTLSGRVPA-ALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~-~~~~~~~~l~~l~l~~  526 (531)
                      +|+++ .+|. .....+.+++.|++..
T Consensus       124 ~N~i~-~~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A          124 NNKIT-NWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             EEECC-CHHHHHHHTTTTTCSEEEECS
T ss_pred             CCcCC-chhHHHHHhcCCCCCEEEecC
Confidence            99998 4543 2233456788888874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.61  E-value=7.2e-09  Score=106.72  Aligned_cols=104  Identities=16%  Similarity=0.307  Sum_probs=50.2

Q ss_pred             EEEEEccCCCCc--c---cCcccccCCCCCCEEEccCCccC----ccCCccccCCCCCCEEecCCCcCCCC----Ccccc
Q 009603          422 IDGLGLDNQGLR--G---FLPNGISKLRHLQSINLSGNSIR----GAIPSSLGTIASLEVLDLSYNFFNGS----IPESL  488 (531)
Q Consensus       422 l~~L~L~~n~l~--g---~~p~~l~~L~~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l  488 (531)
                      ++.|+|++|.+.  |   .++..+..+++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+
T Consensus       189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence            445555555554  2   22224455555555555555553    34444555555555555555555443    33333


Q ss_pred             --cCCCCCCEEeccCCCCCC----CCChhhhhhccccceeeec
Q 009603          489 --GQLTALRRLNLNGNTLSG----RVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       489 --~~l~~L~~L~L~~N~l~g----~iP~~~~~~~~~l~~l~l~  525 (531)
                        +++++|+.|+|++|.+++    .+|..+...+.++..|++.
T Consensus       269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~  311 (386)
T 2ca6_A          269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  311 (386)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence              225555555555555554    2444443334445555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.60  E-value=7.2e-10  Score=103.30  Aligned_cols=104  Identities=21%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++..+ ..+..+++|++|+|
T Consensus        71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l  147 (198)
T 1ds9_A           71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred             CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence            4788999999998 678788888999999999999996 55 68889999999999999984222 47889999999999


Q ss_pred             cCCCCCCCCChh---------hhhhccccceeeeccc
Q 009603          500 NGNTLSGRVPAA---------LGGRLLHRASFKYVWA  527 (531)
Q Consensus       500 ~~N~l~g~iP~~---------~~~~~~~l~~l~l~~~  527 (531)
                      ++|.+++.+|..         ....+.+++.||-..+
T Consensus       148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i  184 (198)
T 1ds9_A          148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV  184 (198)
T ss_dssp             CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGG
T ss_pred             cCCccccccccccchHHHHHHHHHhCCCcEEECCccc
Confidence            999998776642         2344567788875444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.60  E-value=7.9e-08  Score=104.10  Aligned_cols=88  Identities=23%  Similarity=0.350  Sum_probs=71.4

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCC-------CEEecCCCcCCCCCcccccCCCC
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL-------EVLDLSYNFFNGSIPESLGQLTA  493 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~g~iP~~l~~l~~  493 (531)
                      .++.|+|++|.|++ +|. +.  ++|+.|+|++|.|+ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++
T Consensus       161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~  231 (571)
T 3cvr_A          161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP  231 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred             CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence            37789999999887 666 65  88999999999998 7776 554  67       99999999998 68888888999


Q ss_pred             CCEEeccCCCCCCCCChhhhhhcc
Q 009603          494 LRRLNLNGNTLSGRVPAALGGRLL  517 (531)
Q Consensus       494 L~~L~L~~N~l~g~iP~~~~~~~~  517 (531)
                      |+.|+|++|.|+|.+|..+..+..
T Consensus       232 L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          232 TCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             TEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCEEEeeCCcCCCcCHHHHHHhhc
Confidence            999999999999989888877643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.58  E-value=1.3e-07  Score=99.85  Aligned_cols=94  Identities=15%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++. |  ++.+++|+.|+|++|.+++. |  ++++++|+.|+|++|++++ +|  ++++++|++|+|+
T Consensus        65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA  135 (457)
T ss_dssp             TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred             CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence            478899999999875 3  88899999999999999864 4  8889999999999999986 55  8889999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeeccc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~~  527 (531)
                      +|++++ +|  ++ .+.+++.|++++.
T Consensus       136 ~N~l~~-l~--l~-~l~~L~~L~l~~n  158 (457)
T 3bz5_A          136 RNTLTE-ID--VS-HNTQLTELDCHLN  158 (457)
T ss_dssp             TSCCSC-CC--CT-TCTTCCEEECTTC
T ss_pred             CCccce-ec--cc-cCCcCCEEECCCC
Confidence            999986 54  33 3556788887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.57  E-value=1.4e-08  Score=102.18  Aligned_cols=105  Identities=19%  Similarity=0.193  Sum_probs=91.2

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCcc-CCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|++++|.+.+..+. +.++++|+.|+|++|.+++. +|..+..+++|+.|+|++|++++..|..++++++|++|+|
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            478899999999987665 66899999999999999876 8888999999999999999999999999999999999999


Q ss_pred             cCC-CCCCC-CChhhhhhccccceeeeccc
Q 009603          500 NGN-TLSGR-VPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       500 ~~N-~l~g~-iP~~~~~~~~~l~~l~l~~~  527 (531)
                      ++| .+++. +|..+. .+.+++.|++++.
T Consensus       150 ~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~  178 (336)
T 2ast_B          150 SGCSGFSEFALQTLLS-SCSRLDELNLSWC  178 (336)
T ss_dssp             TTCBSCCHHHHHHHHH-HCTTCCEEECCCC
T ss_pred             CCCCCCCHHHHHHHHh-cCCCCCEEcCCCC
Confidence            999 78763 555454 4568999998865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.56  E-value=1.5e-07  Score=91.74  Aligned_cols=96  Identities=26%  Similarity=0.384  Sum_probs=68.1

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc---------------
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE---------------  486 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~---------------  486 (531)
                      ++.|+|++|+++. ++ .+..+++|+.|+|++|.+++..+  +..+++|+.|+|++|++++ +|.               
T Consensus        43 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~  117 (263)
T 1xeu_A           43 VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNE  117 (263)
T ss_dssp             CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSC
T ss_pred             CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCc
Confidence            7789999999985 45 78999999999999999996544  8999999999999999885 332               


Q ss_pred             -----cccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603          487 -----SLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       487 -----~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                           .+..+++|+.|+|++|++++ +| .+.. +.+++.|+++
T Consensus       118 l~~~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~-l~~L~~L~L~  158 (263)
T 1xeu_A          118 LRDTDSLIHLKNLEILSIRNNKLKS-IV-MLGF-LSKLEVLDLH  158 (263)
T ss_dssp             CSBSGGGTTCTTCCEEECTTSCCCB-CG-GGGG-CTTCCEEECT
T ss_pred             cCCChhhcCcccccEEECCCCcCCC-Ch-HHcc-CCCCCEEECC
Confidence                 24445555555555555552 33 2222 3445555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.56  E-value=1.7e-08  Score=103.16  Aligned_cols=106  Identities=24%  Similarity=0.311  Sum_probs=72.5

Q ss_pred             EEEEEccCCCCcccCcccccCC-----CCCCEEEccCCccCccCCccc----cCC-CCCCEEecCCCcCCCCCccccc--
Q 009603          422 IDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSL----GTI-ASLEVLDLSYNFFNGSIPESLG--  489 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~ip~~l----~~l-~~L~~L~Ls~N~l~g~iP~~l~--  489 (531)
                      ++.|+|++|.+.+..+..+..+     ++|+.|+|++|.+++..+..+    ..+ ++|+.|+|++|++++..+..+.  
T Consensus        53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  132 (362)
T 3goz_A           53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA  132 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence            6778888888887766666664     788888888888876666543    334 7888888888888766554433  


Q ss_pred             --C-CCCCCEEeccCCCCCCCCChhh----hhhccccceeeeccc
Q 009603          490 --Q-LTALRRLNLNGNTLSGRVPAAL----GGRLLHRASFKYVWA  527 (531)
Q Consensus       490 --~-l~~L~~L~L~~N~l~g~iP~~~----~~~~~~l~~l~l~~~  527 (531)
                        . .++|++|+|++|.+++.-+..+    .....+++.|++++.
T Consensus       133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A          133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence              3 2578888888888875443333    333346777777643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.54  E-value=1.4e-07  Score=99.66  Aligned_cols=95  Identities=26%  Similarity=0.360  Sum_probs=49.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.+.+..+  +..+++|+.|+|++|.+++..|  +..+++|+.|++++|++++.  ..+.++++|+.|+|++
T Consensus       289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  362 (466)
T 1o6v_A          289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH  362 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred             cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence            4555555555554332  5555555555665555554433  45555555555555555543  2455555566666666


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |++++..|  + ..+.++..|++.
T Consensus       363 n~l~~~~~--~-~~l~~L~~L~l~  383 (466)
T 1o6v_A          363 NQISDLTP--L-ANLTRITQLGLN  383 (466)
T ss_dssp             SCCCBCGG--G-TTCTTCCEEECC
T ss_pred             CccCccch--h-hcCCCCCEEecc
Confidence            65555444  2 223344444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.51  E-value=2.2e-07  Score=93.81  Aligned_cols=100  Identities=23%  Similarity=0.398  Sum_probs=85.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+  +..+++|+.|+|++|.+++ + +.+..+++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus       222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLN  295 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECC
T ss_pred             cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECc
Confidence            47899999999987544  8999999999999999985 3 478999999999999999995 44 58899999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeeccc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~~  527 (531)
                      +|.+++..|..+.. +.+++.|++++.
T Consensus       296 ~n~l~~~~~~~l~~-l~~L~~L~L~~n  321 (347)
T 4fmz_A          296 NNQLGNEDMEVIGG-LTNLTTLFLSQN  321 (347)
T ss_dssp             SSCCCGGGHHHHHT-CTTCSEEECCSS
T ss_pred             CCcCCCcChhHhhc-cccCCEEEccCC
Confidence            99999777776765 567899998753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.50  E-value=4.5e-08  Score=99.95  Aligned_cols=106  Identities=23%  Similarity=0.249  Sum_probs=89.2

Q ss_pred             EEEEEccCCCCcccCc----ccccCCC-CCCEEEccCCccCccCCccccCC-----CCCCEEecCCCcCCCCCccccc--
Q 009603          422 IDGLGLDNQGLRGFLP----NGISKLR-HLQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSYNFFNGSIPESLG--  489 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p----~~l~~L~-~L~~L~Ls~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~iP~~l~--  489 (531)
                      ++.|+|++|.+++..+    ..+..++ +|+.|+|++|.+++..+..+..+     ++|+.|+|++|++++..+..+.  
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            8899999999998777    7788898 89999999999998878777765     9999999999999988777544  


Q ss_pred             --CC-CCCCEEeccCCCCCCCCChhhhhh----ccccceeeeccc
Q 009603          490 --QL-TALRRLNLNGNTLSGRVPAALGGR----LLHRASFKYVWA  527 (531)
Q Consensus       490 --~l-~~L~~L~L~~N~l~g~iP~~~~~~----~~~l~~l~l~~~  527 (531)
                        .+ ++|+.|+|++|.+++..+..+...    +.+++.|++++.
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  148 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN  148 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence              44 899999999999997666666554    457899998853

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.50  E-value=2.1e-07  Score=98.35  Aligned_cols=97  Identities=23%  Similarity=0.349  Sum_probs=73.2

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+  +..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|++++..|  +..+++|+.|+++
T Consensus       266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  339 (466)
T 1o6v_A          266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY  339 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred             CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence            36788888888876544  7788888888888888886443  7788888888888888887655  6788888888888


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|.+++. | .+. .+.+++.|++++
T Consensus       340 ~n~l~~~-~-~l~-~l~~L~~L~l~~  362 (466)
T 1o6v_A          340 NNKVSDV-S-SLA-NLTNINWLSAGH  362 (466)
T ss_dssp             SSCCCCC-G-GGT-TCTTCCEEECCS
T ss_pred             CCccCCc-h-hhc-cCCCCCEEeCCC
Confidence            8888853 3 343 356777887764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.48  E-value=2.3e-08  Score=102.94  Aligned_cols=105  Identities=20%  Similarity=0.199  Sum_probs=65.4

Q ss_pred             EEEEEccCC---CCcccCcccc-------cCCCCCCEEEccCCccCc----cCCccccCCCCCCEEecCCCcCCCCCccc
Q 009603          422 IDGLGLDNQ---GLRGFLPNGI-------SKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPES  487 (531)
Q Consensus       422 l~~L~L~~n---~l~g~~p~~l-------~~L~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~  487 (531)
                      ++.|+|++|   .+.+.+|..+       ..+++|+.|+|++|.+++    .+|..+..+++|+.|+|++|.+++..+..
T Consensus        62 L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  141 (386)
T 2ca6_A           62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK  141 (386)
T ss_dssp             CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH
T ss_pred             ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH
Confidence            667777774   3445555544       567777777777777776    46666777777777777777775433333


Q ss_pred             ----ccCC---------CCCCEEeccCCCCC-CCCCh--hhhhhccccceeeecc
Q 009603          488 ----LGQL---------TALRRLNLNGNTLS-GRVPA--ALGGRLLHRASFKYVW  526 (531)
Q Consensus       488 ----l~~l---------~~L~~L~L~~N~l~-g~iP~--~~~~~~~~l~~l~l~~  526 (531)
                          +..+         ++|++|+|++|+++ +.+|.  .....+.+++.|++++
T Consensus       142 l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  196 (386)
T 2ca6_A          142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ  196 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence                3233         67777777777776 33443  2223455666776664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.43  E-value=4.4e-07  Score=95.64  Aligned_cols=92  Identities=21%  Similarity=0.296  Sum_probs=46.6

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|++++|.+++ +|..   +.+|+.|+|++|.+++ +| .++++++|+.|++++|++++ +|...   ++|+.|++++
T Consensus       155 L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~  224 (454)
T 1jl5_A          155 LKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGN  224 (454)
T ss_dssp             CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCS
T ss_pred             CCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcC
Confidence            4455555555543 3322   1345555555555553 34 35555555555555555553 33321   3556666666


Q ss_pred             CCCCCCCChhhhhhccccceeeecc
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |.++ .+|. ++ .+.+++.|++++
T Consensus       225 n~l~-~lp~-~~-~l~~L~~L~l~~  246 (454)
T 1jl5_A          225 NILE-ELPE-LQ-NLPFLTTIYADN  246 (454)
T ss_dssp             SCCS-SCCC-CT-TCTTCCEEECCS
T ss_pred             CcCC-cccc-cC-CCCCCCEEECCC
Confidence            6665 5653 32 344566666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.42  E-value=6.2e-08  Score=94.46  Aligned_cols=86  Identities=24%  Similarity=0.301  Sum_probs=66.7

Q ss_pred             cCCCCCCEEEccCCccCc--cCCccccCCCCCCEEecCCCcCCCCCcccccCCC--CCCEEeccCCCCCCCCCh------
Q 009603          441 SKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT--ALRRLNLNGNTLSGRVPA------  510 (531)
Q Consensus       441 ~~L~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~L~~N~l~g~iP~------  510 (531)
                      .++++|+.|+|++|.|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            567889999999999997  6677778899999999999999864  3344444  899999999999988873      


Q ss_pred             hhhhhccccceeeecccc
Q 009603          511 ALGGRLLHRASFKYVWAM  528 (531)
Q Consensus       511 ~~~~~~~~l~~l~l~~~~  528 (531)
                      .+...+.+|..||-..+.
T Consensus       245 ~il~~~P~L~~LDg~~v~  262 (267)
T 3rw6_A          245 AIRERFPKLLRLDGHELP  262 (267)
T ss_dssp             HHHHHCTTCCEESSCBCC
T ss_pred             HHHHHCcccCeECCcCCC
Confidence            344566678888765544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.41  E-value=2.8e-07  Score=97.23  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=49.5

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCC-------CCCEEecCCCcCCCCCcccccCCCCC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA-------SLEVLDLSYNFFNGSIPESLGQLTAL  494 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~-------~L~~L~Ls~N~l~g~iP~~l~~l~~L  494 (531)
                      ++.|+|++|.+++ +|  +..+++|+.|+|++|.+++..+..+.+|.       +|+.|++++|.+.|.+|  ++.+++|
T Consensus       214 L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L  288 (457)
T 3bz5_A          214 LTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKI  288 (457)
T ss_dssp             CSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred             CCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccC
Confidence            5566666666665 33  55666666666666666654444444433       44555555555555555  3456666


Q ss_pred             CEEeccCCCCCCCCCh
Q 009603          495 RRLNLNGNTLSGRVPA  510 (531)
Q Consensus       495 ~~L~L~~N~l~g~iP~  510 (531)
                      +.|+|++|.+.|.+|.
T Consensus       289 ~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          289 KELDVTHNTQLYLLDC  304 (457)
T ss_dssp             CCCCCTTCTTCCEEEC
T ss_pred             CEEECCCCcccceecc
Confidence            7777777766666664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.41  E-value=2.7e-07  Score=100.96  Aligned_cols=86  Identities=30%  Similarity=0.396  Sum_probs=76.0

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.|++ +|   ..+++|+.|+|++|.|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++
T Consensus       223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred             CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence            7889999999997 45   55789999999999999 6776   6789999999999999 8899999999999999999


Q ss_pred             CCCCCCCChhhhhhc
Q 009603          502 NTLSGRVPAALGGRL  516 (531)
Q Consensus       502 N~l~g~iP~~~~~~~  516 (531)
                      |.++|.+|..+..+.
T Consensus       294 N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          294 NPLSERTLQALREIT  308 (622)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHhcc
Confidence            999999888776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.40  E-value=1.9e-07  Score=98.47  Aligned_cols=87  Identities=26%  Similarity=0.418  Sum_probs=53.5

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC--CCcccccCC-------
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG--SIPESLGQL-------  491 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~iP~~l~~l-------  491 (531)
                      .++.|+|++|.+++ +|..   +++|+.|+|++|.++ .+|.   .+++|+.|+|++|++++  .+|..++.+       
T Consensus       318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~  389 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA  389 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred             cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence            37889999999987 5543   588999999999999 5776   57899999999999998  888888877       


Q ss_pred             ------CCCCEEeccCCCCCC--CCChhhhhh
Q 009603          492 ------TALRRLNLNGNTLSG--RVPAALGGR  515 (531)
Q Consensus       492 ------~~L~~L~L~~N~l~g--~iP~~~~~~  515 (531)
                            ++|+.|+|++|+++|  .+|.++..+
T Consensus       390 ~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          390 EVPELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             --------------------------------
T ss_pred             ccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence                  889999999999997  888877554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.28  E-value=1.7e-06  Score=94.72  Aligned_cols=91  Identities=26%  Similarity=0.291  Sum_probs=72.1

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.++. +|.   .+++|+.|+|++|.+++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++
T Consensus       203 L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          203 LYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             CCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             hhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence            5566666666663 332   24789999999999985 66   45688999999999999 6776   678999999999


Q ss_pred             CCCCCCCChhhhhhccccceeeecc
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |+|+ .+|..+.. +.++..|++++
T Consensus       271 N~L~-~lp~~l~~-l~~L~~L~L~~  293 (622)
T 3g06_A          271 NQLT-RLPESLIH-LSSETTVNLEG  293 (622)
T ss_dssp             SCCC-SCCGGGGG-SCTTCEEECCS
T ss_pred             CCCC-cCCHHHhh-ccccCEEEecC
Confidence            9999 89988765 46788888874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.22  E-value=1.5e-06  Score=88.22  Aligned_cols=99  Identities=13%  Similarity=0.078  Sum_probs=78.7

Q ss_pred             EEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCE-EeccC
Q 009603          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRR-LNLNG  501 (531)
Q Consensus       424 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~-L~L~~  501 (531)
                      .++.++++|+ .+|..+  .++|+.|+|++|+|+..-+..|.+|++|+.|+|++|++.+.+|. .|.++++|+. +.++.
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4678899988 567665  46899999999999954446799999999999999999877775 6788988775 67778


Q ss_pred             CCCCCCCChhhhhhccccceeeecc
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |+++ .+|+.....+.+|+.|++..
T Consensus        90 N~l~-~l~~~~f~~l~~L~~L~l~~  113 (350)
T 4ay9_X           90 NNLL-YINPEAFQNLPNLQYLLISN  113 (350)
T ss_dssp             TTCC-EECTTSBCCCTTCCEEEEEE
T ss_pred             Cccc-ccCchhhhhccccccccccc
Confidence            9999 56555445567888888864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.08  E-value=3.1e-07  Score=96.36  Aligned_cols=82  Identities=17%  Similarity=0.119  Sum_probs=37.7

Q ss_pred             CCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCCCccccc-----CCCCCCEEeccCCCCCCC----CCh
Q 009603          444 RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESLG-----QLTALRRLNLNGNTLSGR----VPA  510 (531)
Q Consensus       444 ~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~-----~l~~L~~L~L~~N~l~g~----iP~  510 (531)
                      ++|+.|+|++|.+++.    ++..+..+++|+.|+|++|.++...+..+.     .+++|+.|+|++|.+++.    +|.
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  221 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  221 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence            3455555555554432    233344445555555555555433222222     234555555555555532    333


Q ss_pred             hhhhhccccceeeecc
Q 009603          511 ALGGRLLHRASFKYVW  526 (531)
Q Consensus       511 ~~~~~~~~l~~l~l~~  526 (531)
                      .+. .+.+++.|++++
T Consensus       222 ~l~-~~~~L~~L~Ls~  236 (461)
T 1z7x_W          222 IVA-SKASLRELALGS  236 (461)
T ss_dssp             HHH-HCTTCCEEECCS
T ss_pred             HHH-hCCCccEEeccC
Confidence            332 234455555553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.08  E-value=1.5e-06  Score=84.55  Aligned_cols=77  Identities=27%  Similarity=0.304  Sum_probs=64.5

Q ss_pred             EEEEEEccCCCCcc--cCcccccCCCCCCEEEccCCccCccCCccccCCC--CCCEEecCCCcCCCCCcc-------ccc
Q 009603          421 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFFNGSIPE-------SLG  489 (531)
Q Consensus       421 ~l~~L~L~~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L~Ls~N~l~g~iP~-------~l~  489 (531)
                      .|+.|+|++|.|++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|+.|+|++|.+++.+|.       .+.
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            48899999999998  5667788999999999999999975  3444444  999999999999988873       367


Q ss_pred             CCCCCCEEec
Q 009603          490 QLTALRRLNL  499 (531)
Q Consensus       490 ~l~~L~~L~L  499 (531)
                      .+++|+.||-
T Consensus       249 ~~P~L~~LDg  258 (267)
T 3rw6_A          249 RFPKLLRLDG  258 (267)
T ss_dssp             HCTTCCEESS
T ss_pred             HCcccCeECC
Confidence            8999998863

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.04  E-value=5.1e-07  Score=94.71  Aligned_cols=87  Identities=22%  Similarity=0.232  Sum_probs=68.0

Q ss_pred             EEEEEEccCCCCccc----CcccccCCCCCCEEEccCCccCccCCccccC-----CCCCCEEecCCCcCCC----CCccc
Q 009603          421 VIDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGAIPSSLGT-----IASLEVLDLSYNFFNG----SIPES  487 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~iP~~  487 (531)
                      .++.|+|++|.+++.    ++..+..+++|+.|+|++|.+++..+..+..     +++|+.|+|++|++++    .+|..
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  393 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  393 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence            477888888888765    5666777888888999888887655544432     6788899999988886    77888


Q ss_pred             ccCCCCCCEEeccCCCCCCC
Q 009603          488 LGQLTALRRLNLNGNTLSGR  507 (531)
Q Consensus       488 l~~l~~L~~L~L~~N~l~g~  507 (531)
                      +..+++|++|+|++|++++.
T Consensus       394 l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          394 LLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHCCCCCEEECCSSSCCHH
T ss_pred             HHhCCCccEEECCCCCCCHH
Confidence            88888899999998888754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.90  E-value=2.5e-06  Score=87.46  Aligned_cols=84  Identities=19%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             EEEEEccCCCCcccCcccc-----cCCCCCCEEEccCCccCc----cCCccccCCCCCCEEecCCCcCCC----CCcccc
Q 009603          422 IDGLGLDNQGLRGFLPNGI-----SKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNG----SIPESL  488 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l-----~~L~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g----~iP~~l  488 (531)
                      ++.|+|++|.|+..-...+     ...+.|+.|+|++|.++.    .++..+..+++|+.|+|++|.|+.    .++..+
T Consensus       128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L  207 (372)
T 3un9_A          128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL  207 (372)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred             ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence            4555555555543222222     123445555555555542    122333445555555555555442    123334


Q ss_pred             cCCCCCCEEeccCCCCC
Q 009603          489 GQLTALRRLNLNGNTLS  505 (531)
Q Consensus       489 ~~l~~L~~L~L~~N~l~  505 (531)
                      ...++|+.|+|++|.++
T Consensus       208 ~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             GGCSCCCEEECCSSCCC
T ss_pred             hcCCCcCeEECCCCCCC
Confidence            44445555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=2.3e-05  Score=78.58  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=82.9

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCC-EEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE-VLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|+++...+..|.++++|+.|+|++| +...-+..|..|++|+ .++|.. +++..-+..|.++++|+.|+|+
T Consensus       228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred             CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence            778999999998777778999999999999998 7755557899999999 999998 7774555789999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceee
Q 009603          501 GNTLSGRVPAALGGRLLHRASFK  523 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~  523 (531)
                      .|++. .|+...+..+.+|+.+.
T Consensus       306 ~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          306 GDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             SSCCC-EECTTTTCTTCCCCEEE
T ss_pred             CCccC-ccchhhhcCCcchhhhc
Confidence            99999 78776666666666553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.67  E-value=8.6e-06  Score=74.76  Aligned_cols=83  Identities=18%  Similarity=0.208  Sum_probs=34.3

Q ss_pred             EEEEEccCCCCcc----cCcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEec--CCCcCCCC----Cccc
Q 009603          422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDL--SYNFFNGS----IPES  487 (531)
Q Consensus       422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~L--s~N~l~g~----iP~~  487 (531)
                      ++.|+|++|.+..    .+...+...+.|+.|+|++|.++..    +...+...+.|+.|+|  ++|.+...    +...
T Consensus        67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~  146 (185)
T 1io0_A           67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM  146 (185)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred             cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence            4444555554432    1222233334445555555544422    2233344444555555  44444421    1122


Q ss_pred             ccCCCCCCEEeccCCCC
Q 009603          488 LGQLTALRRLNLNGNTL  504 (531)
Q Consensus       488 l~~l~~L~~L~L~~N~l  504 (531)
                      +...+.|+.|+|+.|.+
T Consensus       147 L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          147 LEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHCSSCCEEECCCSSH
T ss_pred             HHhCCCcCEEeccCCCC
Confidence            33334455555544443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.66  E-value=6e-06  Score=89.39  Aligned_cols=86  Identities=15%  Similarity=0.114  Sum_probs=54.0

Q ss_pred             EEEEEccCCC--CcccCcccccC-CCCCCEEEccCCccCc-cCCccccCCCCCCEEecCCCcCCCC-CcccccCCCCCCE
Q 009603          422 IDGLGLDNQG--LRGFLPNGISK-LRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRR  496 (531)
Q Consensus       422 l~~L~L~~n~--l~g~~p~~l~~-L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~  496 (531)
                      ++.|+|+.+.  +++.....+.. +++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++. ++..+..+++|+.
T Consensus       438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  517 (592)
T 3ogk_B          438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY  517 (592)
T ss_dssp             CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred             CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence            5667775432  44444444433 6777777777777765 3444556777777777777776543 3334456777777


Q ss_pred             EeccCCCCCCC
Q 009603          497 LNLNGNTLSGR  507 (531)
Q Consensus       497 L~L~~N~l~g~  507 (531)
                      |+|++|++++.
T Consensus       518 L~ls~n~it~~  528 (592)
T 3ogk_B          518 LWVQGYRASMT  528 (592)
T ss_dssp             EEEESCBCCTT
T ss_pred             eECcCCcCCHH
Confidence            77777777643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.60  E-value=9.4e-06  Score=83.15  Aligned_cols=93  Identities=22%  Similarity=0.276  Sum_probs=72.9

Q ss_pred             EEEEEccCCCCcc----cCcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCC----Cccccc
Q 009603          422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESLG  489 (531)
Q Consensus       422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~  489 (531)
                      ++.|+|++|.|+.    .++..+..+++|+.|+|++|.++..    ++..+..+++|+.|+|++|.|+..    ++..+.
T Consensus       157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~  236 (372)
T 3un9_A          157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR  236 (372)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred             cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence            7899999999874    3455667899999999999999753    356677888999999999999852    444566


Q ss_pred             CCCCCCEEeccCCCCCCCCChhhhh
Q 009603          490 QLTALRRLNLNGNTLSGRVPAALGG  514 (531)
Q Consensus       490 ~l~~L~~L~L~~N~l~g~iP~~~~~  514 (531)
                      ..++|++|+|++|.|+..-...+..
T Consensus       237 ~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          237 EHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             hCCCCCEEeccCCCCCHHHHHHHHH
Confidence            6789999999999998544444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.56  E-value=1.2e-05  Score=87.00  Aligned_cols=103  Identities=15%  Similarity=0.039  Sum_probs=62.5

Q ss_pred             EEEEEEccCCCCc----ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcC----------------
Q 009603          421 VIDGLGLDNQGLR----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF----------------  480 (531)
Q Consensus       421 ~l~~L~L~~n~l~----g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l----------------  480 (531)
                      .++.|+|++|.++    +.++..+.++++|+.|+|++|.+.+ +|..+..+++|+.|+++.+..                
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            4788999999987    3445566788999999999998874 455555555566555543211                


Q ss_pred             ----------CCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeee
Q 009603          481 ----------NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKY  524 (531)
Q Consensus       481 ----------~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l  524 (531)
                                .+.+|..+..+++|++|+|++|.+++.....+...+.+++.|++
T Consensus       272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L  325 (592)
T 3ogk_B          272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET  325 (592)
T ss_dssp             CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred             ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence                      12344445555566666666666544333232333444555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.38  E-value=1.6e-05  Score=85.97  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=50.3

Q ss_pred             EEEEEccCCCCcccCcccccC-CCCCCEEEccCCccCccCCccc-cCCCCCCEEecCCCcCCCCCcc-cccCCCCCCEEe
Q 009603          422 IDGLGLDNQGLRGFLPNGISK-LRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLN  498 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~-L~~L~~L~Ls~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~  498 (531)
                      ++.|+|++ .+++.....+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. .+..+++|+.|+
T Consensus       434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  512 (594)
T 2p1m_B          434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW  512 (594)
T ss_dssp             CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred             ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence            56677755 555444444544 6677777777777665544444 4567777777777776543332 233466777777


Q ss_pred             ccCCCCC
Q 009603          499 LNGNTLS  505 (531)
Q Consensus       499 L~~N~l~  505 (531)
                      |++|.++
T Consensus       513 l~~~~~~  519 (594)
T 2p1m_B          513 MSSCSVS  519 (594)
T ss_dssp             EESSCCB
T ss_pred             eeCCCCC
Confidence            7777664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.35  E-value=3.4e-05  Score=83.37  Aligned_cols=61  Identities=15%  Similarity=0.171  Sum_probs=25.8

Q ss_pred             EEEEEccCCCCcccCccccc-CCCCCCEEEccCC-ccCcc-CCccccCCCCCCEEecCCCcCCC
Q 009603          422 IDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGN-SIRGA-IPSSLGTIASLEVLDLSYNFFNG  482 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N-~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g  482 (531)
                      ++.|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+.++++|+.|+|++|.+++
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence            34445554444443333333 3444555555444 22211 22222344445555554444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.20  E-value=4.9e-05  Score=69.66  Aligned_cols=105  Identities=19%  Similarity=0.325  Sum_probs=79.5

Q ss_pred             EEEEEccCC-CCcc----cCcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCC----Ccccc
Q 009603          422 IDGLGLDNQ-GLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL  488 (531)
Q Consensus       422 l~~L~L~~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l  488 (531)
                      ++.|+|++| .+..    .+...+...++|+.|+|++|.+...    +...+...+.|+.|+|++|.|...    +...+
T Consensus        38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L  117 (185)
T 1io0_A           38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL  117 (185)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred             CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence            778999999 8864    2445677789999999999999743    344566678999999999999853    45667


Q ss_pred             cCCCCCCEEec--cCCCCCCCCChhhhhhc---cccceeeecc
Q 009603          489 GQLTALRRLNL--NGNTLSGRVPAALGGRL---LHRASFKYVW  526 (531)
Q Consensus       489 ~~l~~L~~L~L--~~N~l~g~iP~~~~~~~---~~l~~l~l~~  526 (531)
                      ...+.|++|+|  +.|.+...--..+...+   ..++.|++++
T Consensus       118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence            78889999999  88999854333344332   4678888875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.08  E-value=0.00074  Score=67.40  Aligned_cols=79  Identities=11%  Similarity=0.022  Sum_probs=53.4

Q ss_pred             CCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCC-EEeccCCCCCCCCChhhhhhccccce
Q 009603          443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR-RLNLNGNTLSGRVPAALGGRLLHRAS  521 (531)
Q Consensus       443 L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~-~L~L~~N~l~g~iP~~~~~~~~~l~~  521 (531)
                      +++|+.|+|++|+++..-+..|..|++|+.|+|++| +...-+..|.++.+|+ .|+|.+ .++ .|++..+..+.+|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence            567777777777777444456777777777777776 5533345677777777 777776 555 566655555666777


Q ss_pred             eee
Q 009603          522 FKY  524 (531)
Q Consensus       522 l~l  524 (531)
                      +++
T Consensus       302 l~l  304 (329)
T 3sb4_A          302 VLA  304 (329)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            766

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.88  E-value=0.00033  Score=63.42  Aligned_cols=84  Identities=13%  Similarity=0.123  Sum_probs=64.3

Q ss_pred             eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCc-cCccCCccccCC----CCCCEEecCCCc-CCCCCcccccCCCC
Q 009603          420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTI----ASLEVLDLSYNF-FNGSIPESLGQLTA  493 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~ip~~l~~l----~~L~~L~Ls~N~-l~g~iP~~l~~l~~  493 (531)
                      ..|+.|+|+++.++..--..+.++++|+.|+|+++. ++..--..+..+    ++|+.|+|+++. ++-.--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            359999999999875433567899999999999985 765444456654    479999999974 66332245778999


Q ss_pred             CCEEeccCCC
Q 009603          494 LRRLNLNGNT  503 (531)
Q Consensus       494 L~~L~L~~N~  503 (531)
                      |+.|+|++..
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.39  E-value=0.0056  Score=52.42  Aligned_cols=56  Identities=21%  Similarity=0.334  Sum_probs=41.8

Q ss_pred             EEEccCCCCc-ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCC
Q 009603          424 GLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN  481 (531)
Q Consensus       424 ~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  481 (531)
                      .++.++++|+ ..+|..+  -.+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5778888886 3455433  246889999999998555566788888999999998775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.32  E-value=0.00067  Score=68.98  Aligned_cols=39  Identities=23%  Similarity=0.435  Sum_probs=16.3

Q ss_pred             CCCCCEEecCCCcCCCC----CcccccCCCCCCEEeccCCCCC
Q 009603          467 IASLEVLDLSYNFFNGS----IPESLGQLTALRRLNLNGNTLS  505 (531)
Q Consensus       467 l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~  505 (531)
                      +++|+.|+|+.|.+...    ++..+..+++|+.|+|+.|.++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            34444444444444431    2222233444444444444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.08  E-value=0.0026  Score=64.53  Aligned_cols=105  Identities=14%  Similarity=0.148  Sum_probs=64.7

Q ss_pred             EEEEEccCCCCcccCccccc--CCCCCCEEEccC--CccCcc-----CCccc--cCCCCCCEEecCCCcCCCCCccccc-
Q 009603          422 IDGLGLDNQGLRGFLPNGIS--KLRHLQSINLSG--NSIRGA-----IPSSL--GTIASLEVLDLSYNFFNGSIPESLG-  489 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~--~L~~L~~L~Ls~--N~l~g~-----ip~~l--~~l~~L~~L~Ls~N~l~g~iP~~l~-  489 (531)
                      |+.|.|..+++....-..++  .+++|+.|+|+.  |...|.     +...+  ..+++|+.|+|.+|.+....+..+. 
T Consensus       195 L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~  274 (362)
T 2ra8_A          195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE  274 (362)
T ss_dssp             CSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH
T ss_pred             CcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh
Confidence            66777777766543333343  688888888753  222221     11122  2478899999988887754443333 


Q ss_pred             --CCCCCCEEeccCCCCCCCCChhhh---hhccccceeeecc
Q 009603          490 --QLTALRRLNLNGNTLSGRVPAALG---GRLLHRASFKYVW  526 (531)
Q Consensus       490 --~l~~L~~L~L~~N~l~g~iP~~~~---~~~~~l~~l~l~~  526 (531)
                        .+++|++|+|+.|.+.+.-+..+.   ..+.+|+.|++++
T Consensus       275 a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence              477899999999988754222222   2356788888864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.69  E-value=0.013  Score=60.17  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=65.5

Q ss_pred             EEEEEccCCCCc-----ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCE
Q 009603          422 IDGLGLDNQGLR-----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR  496 (531)
Q Consensus       422 l~~L~L~~n~l~-----g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~  496 (531)
                      |+.|.|.++.+.     ..-+..|.++++|+.++|. +.+.-.-...|..|++|+.+.|..| ++..-+..|.++ +|+.
T Consensus       273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~  349 (401)
T 4fdw_A          273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE  349 (401)
T ss_dssp             CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred             CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence            667777776654     2334567788888888888 4466444567788888888888654 553344577888 8899


Q ss_pred             EeccCCCCCCCCCh-hhhhhccccceeee
Q 009603          497 LNLNGNTLSGRVPA-ALGGRLLHRASFKY  524 (531)
Q Consensus       497 L~L~~N~l~g~iP~-~~~~~~~~l~~l~l  524 (531)
                      |.+++|.+. .++. .+.++..++..|.+
T Consensus       350 l~l~~n~~~-~l~~~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          350 VKVEGTTPP-QVFEKVWYGFPDDITVIRV  377 (401)
T ss_dssp             EEECCSSCC-BCCCSSCCCSCTTCCEEEE
T ss_pred             EEEcCCCCc-ccccccccCCCCCccEEEe
Confidence            999888876 4443 34444344444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.66  E-value=0.018  Score=49.15  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             EEEccCCccC-ccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCC
Q 009603          448 SINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS  505 (531)
Q Consensus       448 ~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~  505 (531)
                      .++.+++.|+ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777775 35554432  35777777777777433445666777777777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.48  E-value=0.0049  Score=55.69  Aligned_cols=84  Identities=13%  Similarity=0.082  Sum_probs=60.2

Q ss_pred             CCCCEEEccCCccCccCCccccCCCCCCEEecCCCc-CCCCCcccccCC----CCCCEEeccCCC-CCCCCChhhhhhcc
Q 009603          444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNGSIPESLGQL----TALRRLNLNGNT-LSGRVPAALGGRLL  517 (531)
Q Consensus       444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~L~~N~-l~g~iP~~~~~~~~  517 (531)
                      -.|+.|||+++.++..--..+..|++|+.|+|+++. ++..--..++.+    ++|++|+|+++. ++..==..+.. +.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence            369999999999876545567899999999999985 553222345554    379999999975 65211123443 47


Q ss_pred             ccceeeecccc
Q 009603          518 HRASFKYVWAM  528 (531)
Q Consensus       518 ~l~~l~l~~~~  528 (531)
                      +|+.|+++.+.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            78999998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.42  E-value=0.022  Score=58.51  Aligned_cols=98  Identities=12%  Similarity=0.116  Sum_probs=45.3

Q ss_pred             EEEEccCCCCcccCcccccCCCCCCEEEccCCccC-----ccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEE
Q 009603          423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-----GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL  497 (531)
Q Consensus       423 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  497 (531)
                      +.+.| .+++...-...|.++++|+.++|.+|.+.     ..-+..|..|++|+.++|. +.+.-.-...|.++.+|+.|
T Consensus       251 ~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          251 TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEE
T ss_pred             cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEE
Confidence            34444 23343333445555555666555555443     1222345555556665555 23442222345555556655


Q ss_pred             eccCCCCCCCCChhhhhhccccceeeec
Q 009603          498 NLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       498 ~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      .|..| ++ .|+...+..+ +++.+.+.
T Consensus       329 ~lp~~-l~-~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          329 TIPAN-VT-QINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             EECTT-CC-EECTTSSSSS-CCCEEEEC
T ss_pred             EECcc-cc-EEcHHhCCCC-CCCEEEEc
Confidence            55433 33 3443333333 45555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.68  E-value=0.0077  Score=55.39  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=15.9

Q ss_pred             EEEEEccCCCCcc----cCcccccCCCCCCEEEccCCccC
Q 009603          422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIR  457 (531)
Q Consensus       422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~  457 (531)
                      |+.|+|++|.|..    .+...+..-+.|+.|+|++|.|+
T Consensus        72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            4455555555442    11222333344555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.26  E-value=0.44  Score=47.84  Aligned_cols=78  Identities=13%  Similarity=0.135  Sum_probs=53.3

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L~  500 (531)
                      ++.+.+.. ++...-...+.++++|+.+.+.++.+.-.-...|.+|.+|+.+.|..+ ++ .|. .+|.++.+|+.+.+.
T Consensus       265 l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          265 LKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             hccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence            44555543 344333456778888888888888777444567888888998888754 55 333 467888888888776


Q ss_pred             CC
Q 009603          501 GN  502 (531)
Q Consensus       501 ~N  502 (531)
                      .+
T Consensus       342 ~~  343 (379)
T 4h09_A          342 KS  343 (379)
T ss_dssp             TT
T ss_pred             Cc
Confidence            54

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.59  E-value=1.1  Score=45.34  Aligned_cols=78  Identities=14%  Similarity=0.278  Sum_probs=49.0

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCC-cccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~L~  500 (531)
                      |+.+.+. +++...-...|.++.+|+.++|..+ ++-.-...|..|.+|+.+.|..+ ++ .| ..+|.++.+|+.+++.
T Consensus       290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEES
T ss_pred             cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEEC
Confidence            4556664 3344333456777778888877654 44233456777888888877644 55 34 3467778888888777


Q ss_pred             CCC
Q 009603          501 GNT  503 (531)
Q Consensus       501 ~N~  503 (531)
                      +|.
T Consensus       366 ~~~  368 (394)
T 4gt6_A          366 GSR  368 (394)
T ss_dssp             SCH
T ss_pred             Cce
Confidence            664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.71  E-value=0.22  Score=45.62  Aligned_cols=106  Identities=14%  Similarity=0.209  Sum_probs=71.1

Q ss_pred             EEEEEEccCC-CCcc----cCcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCC----Cccc
Q 009603          421 VIDGLGLDNQ-GLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPES  487 (531)
Q Consensus       421 ~l~~L~L~~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~  487 (531)
                      .++.|+|++| .|..    .+-..+..-+.|+.|+|++|.+...    +-..+..-+.|+.|+|+.|.|...    +-+.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            3789999986 6652    2345567778999999999999733    233455568899999999999842    3344


Q ss_pred             ccCCCCCCEEeccCCC---CCCCCChhhhhhc---cccceeeecc
Q 009603          488 LGQLTALRRLNLNGNT---LSGRVPAALGGRL---LHRASFKYVW  526 (531)
Q Consensus       488 l~~l~~L~~L~L~~N~---l~g~iP~~~~~~~---~~l~~l~l~~  526 (531)
                      +..-+.|+.|+|++|.   +....-..+...+   ..+..|++.+
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            5566779999998653   3322212233322   3566777764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.14  E-value=0.85  Score=46.08  Aligned_cols=78  Identities=13%  Similarity=0.128  Sum_probs=44.7

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.+.+..+ +...-...|.++++|+.++|..+ ++-.-...|.+|.+|+.++|..| ++-.-..+|.++.+|+.++|..
T Consensus       299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            445555432 44333445667777777777543 44222356667777777777655 4422234667777777777654


Q ss_pred             C
Q 009603          502 N  502 (531)
Q Consensus       502 N  502 (531)
                      +
T Consensus       376 ~  376 (394)
T 4fs7_A          376 R  376 (394)
T ss_dssp             G
T ss_pred             C
Confidence            4

>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}

Probab=86.96  E-value=13  Score=31.83  Aligned_cols=90  Identities=19%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             CCcceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCCcc---ceEEEEEEEecCCeEEEEEe
Q 009603           82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD---RAFAEALVFLRDGTVSICFH  158 (531)
Q Consensus        82 g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~~~---~~~~E~~~~~~~~~l~v~f~  158 (531)
                      |..-.|++.+.+.|.|.|++.+.-+.    ......+|++||..-.++.  |.....   .-...+.+..+.+.=.|.|.
T Consensus        38 G~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~  111 (145)
T 2w3j_A           38 GASIVWSLSAASAKTYTAQIRFGNGG----TSARRATVVVNDSQIKTLD--FPTNSNWTQWQTVNVDIPLKAGTNSIKLV  111 (145)
T ss_dssp             TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEC--CCCCSCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred             CCEEEEEEECCCCeEEEEEEEEECCC----CCCeEEEEEECCeEeeEEE--ecCCCCCCeeEEEEEEEEECCCceEEEEE
Confidence            44568888887889999999987432    2356799999996543443  322211   11222233446666666666


Q ss_pred             ec-CCCCCcEEeEEEEEcCC
Q 009603          159 ST-GHGDPAILSLEILQVDD  177 (531)
Q Consensus       159 ~~-~~~~pfIsaiEl~~l~~  177 (531)
                      .. +.+.|-|..|+|.+.+.
T Consensus       112 ~~~~~g~~niD~i~v~~~~~  131 (145)
T 2w3j_A          112 AETADGLANIDSIRVTGNGI  131 (145)
T ss_dssp             ECSTTCCCEEEEEEECSTTE
T ss_pred             EecCcCCEEEEEEEEEcCCC
Confidence            53 34668899999876553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=86.62  E-value=0.75  Score=46.51  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             ccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhcc
Q 009603          438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL  517 (531)
Q Consensus       438 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~  517 (531)
                      ..+..+.+|+.+.+..+ +...-...|..|.+|+.++|..+ ++-.-..+|.++.+|+.+.|..| ++ .|+...+.-+.
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~  366 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI  366 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC
Confidence            35778899999998765 55333467889999999999754 65233457889999999999877 65 67777666677


Q ss_pred             ccceeeec
Q 009603          518 HRASFKYV  525 (531)
Q Consensus       518 ~l~~l~l~  525 (531)
                      +|+.+++.
T Consensus       367 ~L~~i~lp  374 (394)
T 4fs7_A          367 NLKKVELP  374 (394)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEEC
Confidence            78877764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.34  E-value=1.4  Score=44.38  Aligned_cols=83  Identities=16%  Similarity=0.258  Sum_probs=39.7

Q ss_pred             cccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccc
Q 009603          439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH  518 (531)
Q Consensus       439 ~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~  518 (531)
                      .+.+++.|+.+.+. +.+...-...|..|.+|+.++|..+ ++-.-..+|.++.+|+.+.|..+ ++ .|+...+..+.+
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~  358 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTA  358 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTT
T ss_pred             ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCC
Confidence            44555556655554 2333222234555566666655533 33112234555556666655433 33 455444444455


Q ss_pred             cceeeec
Q 009603          519 RASFKYV  525 (531)
Q Consensus       519 l~~l~l~  525 (531)
                      |+.+.+.
T Consensus       359 L~~i~~~  365 (394)
T 4gt6_A          359 LNNIEYS  365 (394)
T ss_dssp             CCEEEES
T ss_pred             CCEEEEC
Confidence            5555443

>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*

Probab=83.64  E-value=4.3  Score=33.78  Aligned_cols=40  Identities=23%  Similarity=0.451  Sum_probs=32.2

Q ss_pred             CeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeec
Q 009603          269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAF  313 (531)
Q Consensus       269 ~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~  313 (531)
                      .++|+..++..|.|.+.++++.-.     ...|.++|+|||..+.
T Consensus        40 ~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~~   79 (127)
T 2vzp_A           40 SVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSISA   79 (127)
T ss_dssp             EEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEEE
T ss_pred             EEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEee
Confidence            488998888889999999998621     2468899999998753

>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A

Probab=82.10  E-value=5  Score=34.27  Aligned_cols=85  Identities=16%  Similarity=0.372  Sum_probs=49.1

Q ss_pred             CeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeccCCceeeecCC--ceeeEEEEEEeeecCceEEEEE
Q 009603          269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGD--RYTALVLNTTVAVNGRTLTVTL  346 (531)
Q Consensus       269 ~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~--~~~~~~~~~~v~~~~~~l~i~~  346 (531)
                      .++|+..++..|.|.|.+.++.-     ....|.++|+|||..+...+.+.. ++.  .....  ...+....|.-+|.|
T Consensus        41 ~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~~~~~v~~p~-Tg~w~~w~~~--~~~v~L~aG~ntI~l  112 (144)
T 2w47_A           41 YIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNIVKPSMDFVS-TGAWTTWNEA--GIVANLNQGNNVIRA  112 (144)
T ss_dssp             EEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEE--EEEEEECSEEEEEEE
T ss_pred             EEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeEeeeEEEecC-CCCCCeeEEE--EEEEEECCCccEEEE
Confidence            48899888878999999999852     124689999999986433333222 221  11212  223455555544444


Q ss_pred             c--cCCCchhhhhhHhhh
Q 009603          347 H--PKGGSHAIINAIEVF  362 (531)
Q Consensus       347 ~--p~~~~~p~lnalei~  362 (531)
                      .  ...+ .+-|..|++.
T Consensus       113 ~~~~~~g-~~niD~i~v~  129 (144)
T 2w47_A          113 TAIASDG-GPNVDYLKVF  129 (144)
T ss_dssp             EECSTTC-CCEEEEEEEE
T ss_pred             EEeCCCC-CEEEeEEEEE
Confidence            4  2222 2455555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=81.93  E-value=2.7  Score=41.84  Aligned_cols=99  Identities=9%  Similarity=0.093  Sum_probs=72.0

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.+.+..+ +...-...+.++..|+.+.+..+ +...-...|..|.+|+.+.+..+.++-.-...|.++.+|+.+.|..
T Consensus       242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            566777654 44444556788899999998654 5433345788999999999999888843446789999999999976


Q ss_pred             CCCCCCCChhhhhhccccceeee
Q 009603          502 NTLSGRVPAALGGRLLHRASFKY  524 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l  524 (531)
                      + ++ .|+...+..+.+|+.+.+
T Consensus       320 ~-l~-~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          320 A-LK-TIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             T-CC-EECTTTTTTCTTCCCCCC
T ss_pred             c-cc-EEHHHHhhCCCCCCEEEE
Confidence            5 55 677766666667776655

>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}

Probab=81.10  E-value=18  Score=31.27  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=55.3

Q ss_pred             ceEE-eeecCCceeEEEEEEecccCC-----CCC-CCCcEEEEEcCeeEEEeecCCCCC---ccceEEEEEEEecCCeEE
Q 009603           85 NCYI-INRVPKGHYNVRIFFGLVTLT-----SFD-HEPLFDISVEGTQIYSLKSGWSDH---DDRAFAEALVFLRDGTVS  154 (531)
Q Consensus        85 ~cY~-~~~~~~g~ylvRl~F~~~~y~-----~~~-~~~~F~v~~~~~~w~~v~~~~~~~---~~~~~~E~~~~~~~~~l~  154 (531)
                      -.++ +.+.+.|+|.|++.|.-+...     +.+ ..+..+|++||..-.++.  |...   +..-...+.+..+.+.=.
T Consensus        49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~--fp~Tg~W~~~~~~tv~V~L~aG~Nt  126 (156)
T 2wz8_A           49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHY--FFNTRGWNTYRTDIIDVYLNAGNNT  126 (156)
T ss_dssp             EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEE--ECCCSSTTCCEEEEEEEEECSEEEE
T ss_pred             EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEE--eCCCCCCCcceEEEEEEEECCCceE
Confidence            3555 666678999999999766321     111 356799999986422332  3221   122233334456777888


Q ss_pred             EEEeec--CCCCCcEEeEEEEEcC
Q 009603          155 ICFHST--GHGDPAILSLEILQVD  176 (531)
Q Consensus       155 v~f~~~--~~~~pfIsaiEl~~l~  176 (531)
                      |.|...  ....|-|-.|+|.+..
T Consensus       127 I~~~~~~~~~~~pdiD~i~v~~~~  150 (156)
T 2wz8_A          127 IRFYNGTSGSYAPNIDKIAIAALE  150 (156)
T ss_dssp             EEEECCSTTCBCCEEEEEEEEC--
T ss_pred             EEEEecCCCCCCcEEEEEEEeccc
Confidence            888876  3456889999987654

>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}

Probab=80.16  E-value=3.2  Score=35.68  Aligned_cols=39  Identities=13%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             CeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeee
Q 009603          269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIA  312 (531)
Q Consensus       269 ~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~  312 (531)
                      .++|+..++..|.|.+.+.++.-     ..+.|.++|+|||..+
T Consensus        40 ~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~   78 (145)
T 2w3j_A           40 SIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQI   78 (145)
T ss_dssp             EEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEE
T ss_pred             EEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEe
Confidence            48899888888999999999842     1246999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	531
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 8e-14
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 379 LQVLKNS-LDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLP 437
           L  LK     + +     G   +                S+   +  L L    +    P
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
             +S L  LQ +  + N +     SSL  + ++  L   +N  +   P  L  LT + +L
Sbjct: 325 --VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 378

Query: 498 NLNGN 502
            LN  
Sbjct: 379 GLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 7e-10
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           L++L  + L  N+I    P  + ++  L+ L  + N  +     SL  LT +  L+   N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 503 TLSGRVP 509
            +S   P
Sbjct: 362 QISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500
           + L       L   ++   +  +   +  +  L         SI + +  L  L ++N +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFS 74

Query: 501 GNTLSGRVP 509
            N L+   P
Sbjct: 75  NNQLTDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            + L  + ++      I+      +  + +L  ++ S N      P  L  LT L  + 
Sbjct: 40  QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 7e-13
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 1/119 (0%)

Query: 384 NSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKL 443
           N L       +            +  +                   +    F    +   
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243

Query: 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           ++L  ++L  N I G +P  L  +  L  L++S+N   G IP+  G L          N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 390 HRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSI 449
             FG + +         S A         K +      +N+ + G LP G+++L+ L S+
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSL 273

Query: 450 NLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
           N+S N++ G IP   G +   +V   + N      P
Sbjct: 274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 35/136 (25%)

Query: 373 PEEVRALQVLKNSLDLPHRF-GWN--GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
           P++ +AL  +K  L  P     W    D C      W G  C                  
Sbjct: 5   PQDKQALLQIKKDLGNPTTLSSWLPTTDCC---NRTWLGVLC------------------ 43

Query: 430 QGLRGFLPNGISKLRHLQSINLSGNSIRGA--IPSSLGTIASLEVLDLSYN-FFNGSIPE 486
                   +  ++   + +++LSG ++     IPSSL  +  L  L +       G IP 
Sbjct: 44  --------DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 487 SLGQLTALRRLNLNGN 502
           ++ +LT L  L +   
Sbjct: 96  AIAKLTQLHYLYITHT 111

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 474 DLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509
           DL  N   G++P+ L QL  L  LN++ N L G +P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.7 bits (138), Expect = 8e-10
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            + GL   +P  +        ++L  N I          + +L  L L  N  +   P +
Sbjct: 18  SDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 488 LGQLTALRRLNLNGNTLSG 506
              L  L RL L+ N L  
Sbjct: 75  FAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL 504
           HL+ +  S   +   +P  L       +LDL  N            L  L  L L  N +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 505 SGRVPAALGG 514
           S   P A   
Sbjct: 68  SKISPGAFAP 77

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 4/131 (3%)

Query: 377 RALQVLKNSL-DLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGF 435
             L + KN L +LP +           ++  +          ++ ++  LG +     G 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
                  ++ L  I ++  +I   IP  L    SL  L L  N        SL  L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 496 RLNLNGNTLSG 506
           +L L+ N++S 
Sbjct: 199 KLGLSFNSISA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 18/80 (22%), Positives = 27/80 (33%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +          L++L ++ L  N I    P +   +  LE L LS N      
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 485 PESLGQLTALRRLNLNGNTL 504
            +    L  LR        +
Sbjct: 96  EKMPKTLQELRVHENEITKV 115

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 4e-09
 Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 10/134 (7%)

Query: 389 PHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWV-IDGLGLDNQGLRGFLPNGISKLRHLQ 447
                W              +           + I    L++ G+R            L+
Sbjct: 313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 372

Query: 448 SINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-----LTALRRLN 498
            + L+   +      ++ ++L    SL  LDLS N    +    L +        L +L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 499 LNGNTLSGRVPAAL 512
           L     S  +   L
Sbjct: 433 LYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 3e-08
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 446 LQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNG----SIPESLGQLTALRRLNLN 500
           +QS+++    +  A     L  +   +V+ L            I  +L    AL  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 501 GNTLSGRVPAALGGRLLH 518
            N L       +   L  
Sbjct: 64  SNELGDVGVHCVLQGLQT 81

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 5e-08
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 440 ISKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL---- 491
           +  L+  Q + L    +       I S+L    +L  L+L  N         + Q     
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82

Query: 492 -TALRRLNLNGN 502
              +++L+L   
Sbjct: 83  SCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 469 SLEVLDLSYNFFNG----SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRAS 521
            L VL L+    +     S+  +L    +LR L+L+ N L       L   +     
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 469 SLEVLDLSYNFFNGS-IPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
            ++ LD+     + +   E L  L   + + L+   L+      +   L  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV 53

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 389 PHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQS 448
            +                +  D   +  S    +             + +       L+ 
Sbjct: 229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 288

Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSG 506
           +N+S N +   +P+       LE L  S+N     +PE       L++L++  N L  
Sbjct: 289 LNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLRE 338

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +SK+     +N    ++  A+P  L       +L LS N        +L   T L +LNL
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 500 NGN 502
           +  
Sbjct: 63  DRA 65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 2/114 (1%)

Query: 389 PHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQS 448
                      +        +           + +     N+      P  ++    L+ 
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEK 152

Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           ++L+ N++       L  + +L+ L L  N    +IP+       L    L+GN
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 411 CQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL 470
           C+  + +    ++    D + L   LP  + K      ++LS N +     ++L     L
Sbjct: 4   CEVSKVASHLEVN---CDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRL 57

Query: 471 EVLDLSYNFFN 481
             L+L      
Sbjct: 58  TQLNLDRAELT 68

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 24/104 (23%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS---------------------S 463
           L L ++ L       + +L  +  ++LS N +R   P+                      
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 464 LGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLNGNTLSG 506
           +  +  L+ L L  N     +  + L     L  LNL GN+L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 472 VLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVWAM 528
           VL L++     ++   L QL  +  L+L+ N L    PA    R L           
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 56

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 431 GLRGFLPNGISKL--RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPES 487
             +   P+   +L  + + +     + +   +         ++ +DLS +     ++   
Sbjct: 8   TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGI 66

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALG 513
           L Q + L+ L+L G  LS  +   L 
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLA 92

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 403 QHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSG-NSIRGAIP 461
           +     +D          ++     D+  L+        +L +LQ ++LS    I     
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218

Query: 462 SSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR 519
             LG I +L+ L +     +G++        AL  L +N +  +      +G +    
Sbjct: 219 LELGEIPTLKTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGS 483
                  +   L    S  R +Q ++LS + I    +   L   + L+ L L     +  
Sbjct: 28  FRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP 86

Query: 484 IPESLGQLTALRRLN 498
           I  +L + + L RLN
Sbjct: 87  IVNTLAKNSNLVRLN 101

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 7/119 (5%)

Query: 390 HRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFL-PNGISKLRHLQS 448
                  +              +      +  ++   L  +G    +      +   LQ+
Sbjct: 218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 277

Query: 449 INLSGNSIRGAIPSSLGTIA-----SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           + L  N I      +L T+       L  L+L+ N F     + + ++  +      G 
Sbjct: 278 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTI------ASLEVLDLSYNFFNGSIPESL-----GQLTA 493
           +L+ + L+   +     +++           L+ L L YN        +L      ++  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 494 LRRLNLNGNTLS 505
           L  L LNGN  S
Sbjct: 304 LLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
           +   + +   ++ I LSGN+I       +  ++ +   LE+ + S  F      E    L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 492 TALRRLNLNGNTL 504
             L +  L    L
Sbjct: 83  RLLLQALLKCPKL 95

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA 493
           L      +  L S+NLS N +     + S +    +L++L+LS N           +   
Sbjct: 57  LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 494 LRRLNLNGNTLSGRVPAALGGRLLHRASF 522
           L  L L+GN+LS             R  F
Sbjct: 117 LEELWLDGNSLSDTFRDQSTYISAIRERF 145

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 14/122 (11%), Positives = 33/122 (27%)

Query: 382 LKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGIS 441
           +K+  D+             Q +       +       +    L L+  G++       +
Sbjct: 115 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN 174

Query: 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501
             +  +      N++           +   +LD+S    +      L  L  LR  +   
Sbjct: 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234

Query: 502 NT 503
             
Sbjct: 235 LK 236

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++ L  L ++    N I    P  L ++ +L  + L  N  +   P  L   + L  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 500 N 500
            
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 388 LPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQ 447
           + +     G   +      +         ++   +  L  D+  +    P  ++ L +L 
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198

Query: 448 SINLSGNSIRGAIPSSLGTIASLEVLDLS 476
            ++L  N I    P  L   ++L ++ L+
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 22/168 (13%), Positives = 40/168 (23%), Gaps = 30/168 (17%)

Query: 379 LQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQF-----DRTSHKWVIDGLGLDNQGLR 433
           L  L          G      +         D        D       +  L L    + 
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 434 GFLPNGISKLRHLQSINLSGNSIRGAIPSSL------------------------GTIAS 469
                    L  L  + L  N +    P +                           + +
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 470 LEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL 517
           L+ L L+ N +      +      L++   + + +   +P  L GR L
Sbjct: 227 LQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL 273

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500
            + R L   +L G  I   I +   T+   + +D S N       +    L  L+ L +N
Sbjct: 18  VRDREL---DLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVN 71

Query: 501 GNTLSGRVP 509
            N +     
Sbjct: 72  NNRICRIGE 80

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 394 WNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSG 453
                    +  + G +   D T    +     L  +  +      ++ L  LQ++ LS 
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 187

Query: 454 NSIRGAIPSSLGTIASLEVLDLS 476
           N I      +L  + +L+VL+L 
Sbjct: 188 NHISD--LRALAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	531
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.37
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.15
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.14
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.01
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.97
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.97
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.92
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.83
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.7
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.36
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.36
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.35
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.34
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.31
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.29
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.26
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.01
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.92
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.71
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	97.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.33
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.02
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.99
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	96.95
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.34
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	87.85

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=1.5e-19  Score=179.55  Aligned_cols=149  Identities=26%  Similarity=0.505  Sum_probs=120.2

Q ss_pred             CchHHHHHHHHHHhhcCCCCC-CCCC--CCCCCCCCCCCCccccccCCCCcceEEEEEEccCCCCcc--cCcccccCCCC
Q 009603          371 TLPEEVRALQVLKNSLDLPHR-FGWN--GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG--FLPNGISKLRH  445 (531)
Q Consensus       371 ~~~~~~~aL~~~k~~~~~~~~-~~W~--~~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g--~~p~~l~~L~~  445 (531)
                      |.++|++||++||+.+.++.. .+|.  +|+|.   +.|.||.|+...  ...+|+.|+|+++++.|  .+|+.+++|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~---~~w~gv~C~~~~--~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~   77 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC---CcCCCeEEeCCC--CcEEEEEEECCCCCCCCCCCCChHHhcCcc
Confidence            678999999999999987643 4785  46663   469999997533  23479999999999998  58899999999


Q ss_pred             CCEEEccC-CccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeee
Q 009603          446 LQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKY  524 (531)
Q Consensus       446 L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l  524 (531)
                      |++|+|++ |+++|.+|.+|++|++|++|+|++|++.+..|..+..+.+|+.++++.|.+.+.+|..+..+ .++..+++
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l-~~L~~l~l  156 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITF  156 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCCEEEC
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccC-cccceeec
Confidence            99999986 89999999999999999999999999988777777777777777777777777777666543 34555555


Q ss_pred             c
Q 009603          525 V  525 (531)
Q Consensus       525 ~  525 (531)
                      .
T Consensus       157 ~  157 (313)
T d1ogqa_         157 D  157 (313)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=3.4e-13  Score=123.45  Aligned_cols=121  Identities=21%  Similarity=0.204  Sum_probs=102.4

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccC-cccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFL-PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY  477 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~  477 (531)
                      |.|..|.|+..+...     +..++.|+|++|.|++.+ +..+.++++|+.|+|++|.+.+..+..+..+++|+.|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            458888997544221     135789999999998765 55689999999999999999999999999999999999999


Q ss_pred             CcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603          478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       478 N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+|++..|..|.++++|++|+|++|+|+ .||+.....+.+++.|++.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECT
T ss_pred             ccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCccccccccc
Confidence            9999877888999999999999999999 5666555566788898886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.15  E-value=9.4e-12  Score=122.28  Aligned_cols=105  Identities=30%  Similarity=0.521  Sum_probs=97.2

Q ss_pred             EEEEEEccC-CCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603          421 VIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (531)
Q Consensus       421 ~l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L  499 (531)
                      .++.|+|++ |++.|.+|+.|++|++|++|+|++|++.+..|..+..+..|+.++++.|++.+.+|..++++++|+.+++
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            578999997 8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCChhhhhhccccceeeec
Q 009603          500 NGNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       500 ~~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      ++|.++|.+|..++.+...+..+++.
T Consensus       157 ~~n~l~~~ip~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         157 DGNRISGAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccc
Confidence            99999999999988876666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=9.6e-11  Score=98.97  Aligned_cols=97  Identities=28%  Similarity=0.370  Sum_probs=60.0

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCC-cccccCCCCCCEEecc
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNLN  500 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~L~  500 (531)
                      ++.|+|++|.|+ .+|+.++.+++|+.|++++|.++ .+| .++++++|+.|++++|+++... ...+..+++|+.|+|+
T Consensus        22 L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~   98 (124)
T d1dcea3          22 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ   98 (124)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECC
Confidence            566777777776 35556677777777777777776 344 4667777777777777776321 1356667777777777


Q ss_pred             CCCCCC--CCChhhhhhccccce
Q 009603          501 GNTLSG--RVPAALGGRLLHRAS  521 (531)
Q Consensus       501 ~N~l~g--~iP~~~~~~~~~l~~  521 (531)
                      +|+++.  .++..+...+.++..
T Consensus        99 ~N~i~~~~~~~~~l~~~lp~L~~  121 (124)
T d1dcea3          99 GNSLCQEEGIQERLAEMLPSVSS  121 (124)
T ss_dssp             TSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCcCCcCccHHHHHHHHCcCcce
Confidence            777652  223444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=5.5e-10  Score=94.20  Aligned_cols=97  Identities=26%  Similarity=0.299  Sum_probs=82.1

Q ss_pred             EEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCC
Q 009603          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT  503 (531)
Q Consensus       424 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~  503 (531)
                      .|+|++|+++ .++ .+..+++|++|+|++|.++ .+|+.++.+++|+.|++++|+|+ .+| .+.++++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            5899999998 444 5899999999999999998 78888999999999999999999 566 48999999999999999


Q ss_pred             CCCCCCh-hhhhhccccceeeecc
Q 009603          504 LSGRVPA-ALGGRLLHRASFKYVW  526 (531)
Q Consensus       504 l~g~iP~-~~~~~~~~l~~l~l~~  526 (531)
                      ++ .+|. .....+.++..|++.+
T Consensus        77 i~-~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          77 LQ-QSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CC-SSSTTGGGGGCTTCCEEECTT
T ss_pred             cC-CCCCchhhcCCCCCCEEECCC
Confidence            98 5553 2224456788888874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.98  E-value=3.7e-10  Score=102.69  Aligned_cols=89  Identities=26%  Similarity=0.361  Sum_probs=82.6

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+.+..+..+..+++|+.|+|++|++....|..|.++++|+.|+|++|+|++..|..|..+++|++|+|+
T Consensus        55 ~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccc
Confidence            48899999999999999999999999999999999998888889999999999999999998888889999999999999


Q ss_pred             CCCCCCCCC
Q 009603          501 GNTLSGRVP  509 (531)
Q Consensus       501 ~N~l~g~iP  509 (531)
                      +|.+.+..+
T Consensus       135 ~N~~~~~~~  143 (192)
T d1w8aa_         135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             ccccccccc
Confidence            999986543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9.8e-10  Score=96.49  Aligned_cols=100  Identities=25%  Similarity=0.302  Sum_probs=77.2

Q ss_pred             CCCccccccCCCC-------cceEEEEEEccCCC-CcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecC
Q 009603          405 PWSGADCQFDRTS-------HKWVIDGLGLDNQG-LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLS  476 (531)
Q Consensus       405 ~w~gv~C~~~~~~-------~~~~l~~L~L~~n~-l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls  476 (531)
                      .+.+++|...+..       ....+++|+|++|+ |+...+..|.+|++|+.|+|++|+|+...|..|..+++|+.|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            4677888643321       11357788997664 777667788999999999999999997777888999999999999


Q ss_pred             CCcCCCCCcccccCCCCCCEEeccCCCCC
Q 009603          477 YNFFNGSIPESLGQLTALRRLNLNGNTLS  505 (531)
Q Consensus       477 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~  505 (531)
                      +|+|+ .+|.......+|+.|+|++|.|.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            99998 66665545557999999999885

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.4e-10  Score=98.37  Aligned_cols=102  Identities=17%  Similarity=0.224  Sum_probs=67.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc--ccccCCCCCCEEec
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNL  499 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~L  499 (531)
                      ++.|+|++|.|+..  +.+..+++|+.|+|++|.++...+..+..+++|+.|+|++|++. .++  ..+..+++|++|++
T Consensus        43 L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l  119 (162)
T d1a9na_          43 FDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCI  119 (162)
T ss_dssp             CSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEEC
T ss_pred             CCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccchhhc
Confidence            66777777777643  34677777777777777777444444566777778888777776 344  35667777888888


Q ss_pred             cCCCCCCCCCh---hhhhhccccceeeeccc
Q 009603          500 NGNTLSGRVPA---ALGGRLLHRASFKYVWA  527 (531)
Q Consensus       500 ~~N~l~g~iP~---~~~~~~~~l~~l~l~~~  527 (531)
                      ++|.++ .+|.   .+...+.+++.||...+
T Consensus       120 ~~N~i~-~~~~~r~~~i~~lp~L~~LD~~~i  149 (162)
T d1a9na_         120 LRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV  149 (162)
T ss_dssp             CSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCccc-cccchHHHHHHHCCCcCeeCCCCC
Confidence            887776 5553   23344556777765543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.3e-09  Score=105.10  Aligned_cols=103  Identities=24%  Similarity=0.253  Sum_probs=68.7

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.+++++|.|++..+..+..+++|+.|+|++|++++..+..+..+++|+.+++++|++++..|..|..+++|++|++++
T Consensus       131 L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~  210 (284)
T d1ozna_         131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (284)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccc
Confidence            55677777777765556666677777777777777766666667777777777777777766677777777777777777


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |.+.+..|..+ ..+.+++.|+++
T Consensus       211 N~i~~~~~~~~-~~~~~L~~L~l~  233 (284)
T d1ozna_         211 NNLSALPTEAL-APLRALQYLRLN  233 (284)
T ss_dssp             SCCSCCCHHHH-TTCTTCCEEECC
T ss_pred             ccccccccccc-ccccccCEEEec
Confidence            77764333333 334556666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.3e-09  Score=93.01  Aligned_cols=99  Identities=16%  Similarity=0.134  Sum_probs=84.4

Q ss_pred             EEEccCCCCcccCcccccCCCCCCEEEccCC-ccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCC
Q 009603          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGN-SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN  502 (531)
Q Consensus       424 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N  502 (531)
                      .++.+++++. ..|..+..+++|+.|+|++| .++..-+..|..+++|+.|+|++|+|+...|..|..+++|+.|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            4788888887 45777889999999999866 588655678999999999999999999777888999999999999999


Q ss_pred             CCCCCCChhhhhhccccceeeec
Q 009603          503 TLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       503 ~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|+ .+|......+ .+..|+++
T Consensus        91 ~l~-~l~~~~~~~~-~l~~L~L~  111 (156)
T d2ifga3          91 ALE-SLSWKTVQGL-SLQELVLS  111 (156)
T ss_dssp             CCS-CCCSTTTCSC-CCCEEECC
T ss_pred             CCc-ccChhhhccc-cccccccC
Confidence            999 8888776654 57788776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.8e-09  Score=101.88  Aligned_cols=101  Identities=25%  Similarity=0.217  Sum_probs=78.1

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.|++..+..|.++++|+.|+|++|+|+ .+| .++.+++|+.|+|++|+++ .+|..+.++++|+.|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-cccccccccccccccccc
Confidence            4788999999999877778999999999999999998 455 4578899999999999988 456677788888888888


Q ss_pred             CCCCCCCCChhhhhhccccceeeec
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      +|.+. .++......+.++..|++.
T Consensus       109 ~~~~~-~~~~~~~~~l~~l~~L~l~  132 (266)
T d1p9ag_         109 FNRLT-SLPLGALRGLGELQELYLK  132 (266)
T ss_dssp             SSCCC-CCCSSTTTTCTTCCEEECT
T ss_pred             ccccc-eeecccccccccccccccc
Confidence            88776 4444444445555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.6e-09  Score=95.80  Aligned_cols=102  Identities=19%  Similarity=0.108  Sum_probs=83.5

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .+++|+|++|+|+.. +..+..+++|+.|+|++|.++ .++ .+..+++|+.|+|++|+++...+..+..+++|++|+|+
T Consensus        19 ~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            378999999999854 666788999999999999999 554 58899999999999999995444556789999999999


Q ss_pred             CCCCCCCCCh-hhhhhccccceeeecc
Q 009603          501 GNTLSGRVPA-ALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~-~~~~~~~~l~~l~l~~  526 (531)
                      +|+++ .++. .....+.+++.|++..
T Consensus        96 ~N~i~-~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          96 NNSLV-ELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             SCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred             ccccc-ccccccccccccccchhhcCC
Confidence            99998 5654 2223456788888874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=7.2e-09  Score=98.89  Aligned_cols=83  Identities=22%  Similarity=0.271  Sum_probs=53.5

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      +..|++++|.+....+..+..++.|+.|++++|++++..+..|..+++|+.|+|++|+|+ .+|+.+..+++|+.|+|++
T Consensus       126 l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCS
T ss_pred             cccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecC
Confidence            456666666666555555666666666666666666555555666666666666666666 6666666666666666666


Q ss_pred             CCCC
Q 009603          502 NTLS  505 (531)
Q Consensus       502 N~l~  505 (531)
                      |.+.
T Consensus       205 Np~~  208 (266)
T d1p9ag_         205 NPWL  208 (266)
T ss_dssp             CCBC
T ss_pred             CCCC
Confidence            6654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.79  E-value=5.2e-09  Score=101.71  Aligned_cols=92  Identities=16%  Similarity=0.231  Sum_probs=45.2

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc-------cccCCCCC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-------SLGQLTAL  494 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-------~l~~l~~L  494 (531)
                      ++.|++++|.+.+..+..+.++++|+.|+|++|.|+ .+|..+..+++|++|+|++|+|+ .++.       .+..+.+|
T Consensus       197 l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L  274 (305)
T d1xkua_         197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASY  274 (305)
T ss_dssp             CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCC
T ss_pred             ccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCC
Confidence            344555555555554555555555555555555555 44555555555555555555555 2221       12234445


Q ss_pred             CEEeccCCCCC-CCCChhhhhh
Q 009603          495 RRLNLNGNTLS-GRVPAALGGR  515 (531)
Q Consensus       495 ~~L~L~~N~l~-g~iP~~~~~~  515 (531)
                      +.|+|++|.+. +.+|+..+.+
T Consensus       275 ~~L~L~~N~~~~~~~~~~~f~~  296 (305)
T d1xkua_         275 SGVSLFSNPVQYWEIQPSTFRC  296 (305)
T ss_dssp             SEEECCSSSSCGGGSCGGGGTT
T ss_pred             CEEECCCCcCccCcCCHhHhcc
Confidence            55555555543 3444444343

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.6e-08  Score=97.19  Aligned_cols=105  Identities=23%  Similarity=0.235  Sum_probs=93.4

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|++....+..+..+..|+.+++++|++++..+..|..+++|+.|+|++|++++..|..+.++++|+.|+++
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            37889999999988888889999999999999999997767789999999999999999998888899999999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|++++..|..+.. +.++..|+++.
T Consensus       186 ~N~l~~i~~~~f~~-l~~L~~L~l~~  210 (284)
T d1ozna_         186 QNRVAHVHPHAFRD-LGRLMTLYLFA  210 (284)
T ss_dssp             SSCCCEECTTTTTT-CTTCCEEECCS
T ss_pred             hccccccChhHhhh-hhhcccccccc
Confidence            99999777777655 56788888874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.66  E-value=3.7e-08  Score=95.49  Aligned_cols=116  Identities=20%  Similarity=0.248  Sum_probs=89.2

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  478 (531)
                      |.|.++.|+..+...     +..++.|+|++|+|+...+..|.++++|+.|++++|.+....|..|.++++|+.|+|++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            578999997543221     134789999999998776678999999999999999999777888999999999999999


Q ss_pred             cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceee
Q 009603          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFK  523 (531)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~  523 (531)
                      +++ .+|..+  ...|+.|.+..|.+. .++............++
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~  130 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVE  130 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEE
T ss_pred             ccC-cCccch--hhhhhhhhccccchh-hhhhhhhhccccccccc
Confidence            998 677543  457888999999888 45554444333334443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.36  E-value=5.2e-07  Score=83.33  Aligned_cols=95  Identities=20%  Similarity=0.267  Sum_probs=71.6

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      +..+.++.+.+....  .+.++++|+.|++++|.+....  .++++++|+.|+|++|++++ +|. +.++++|++|+|++
T Consensus       131 ~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         131 LQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKN  204 (227)
T ss_dssp             CCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTT
T ss_pred             hhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcC
Confidence            456777777776443  3677888999999998887433  47888999999999999884 543 78889999999999


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+++ .+|+ +. .+.+|..|+++
T Consensus       205 N~lt-~i~~-l~-~l~~L~~L~ls  225 (227)
T d1h6ua2         205 NQIS-DVSP-LA-NTSNLFIVTLT  225 (227)
T ss_dssp             SCCC-BCGG-GT-TCTTCCEEEEE
T ss_pred             CcCC-CCcc-cc-cCCCCCEEEee
Confidence            9988 5654 43 45678888775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.36  E-value=4e-07  Score=90.27  Aligned_cols=96  Identities=24%  Similarity=0.326  Sum_probs=70.3

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.+.+..|.+.+.  ..+..+++|+.|+|++|++++. + .+..+++|+.|+|++|+++ .+| .++++++|++|+|++
T Consensus       287 l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         287 LTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGH  360 (384)
T ss_dssp             CSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCS
T ss_pred             cccccccccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCC
Confidence            44677777777753  3477788888888888888854 3 3778888888888888887 355 578888888888888


Q ss_pred             CCCCCCCChhhhhhccccceeeecc
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |++++..|  +.+ +.+|+.|+++.
T Consensus       361 N~l~~l~~--l~~-l~~L~~L~L~~  382 (384)
T d2omza2         361 NQISDLTP--LAN-LTRITQLGLND  382 (384)
T ss_dssp             SCCCBCGG--GTT-CTTCSEEECCC
T ss_pred             CcCCCChh--hcc-CCCCCEeeCCC
Confidence            88885433  433 45777777753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.35  E-value=1.9e-07  Score=92.69  Aligned_cols=75  Identities=24%  Similarity=0.362  Sum_probs=66.8

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|++++..  .+..+++|+.|+|++|++++ ++ .+++|++|+.|+|++|++++..|  +.++++|+.|+|++
T Consensus       309 l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~  382 (384)
T d2omza2         309 LTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  382 (384)
T ss_dssp             CSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCC
T ss_pred             cCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCC
Confidence            678999999999764  38899999999999999984 55 68999999999999999996554  89999999999998


Q ss_pred             C
Q 009603          502 N  502 (531)
Q Consensus       502 N  502 (531)
                      |
T Consensus       383 N  383 (384)
T d2omza2         383 Q  383 (384)
T ss_dssp             E
T ss_pred             C
Confidence            7

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.3e-07  Score=86.41  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=83.6

Q ss_pred             CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCC-ccccCCCCCCEEecC-
Q 009603          404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLS-  476 (531)
Q Consensus       404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls-  476 (531)
                      |....+.|+..+...     ...+++|+|++|.++...+..|.++++|++|+|++|.+...++ ..|..++.++.|.+. 
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            456778887433221     1358899999999987666789999999999999999987665 468889999999875 


Q ss_pred             CCcCCCCCcccccCCCCCCEEeccCCCCCC
Q 009603          477 YNFFNGSIPESLGQLTALRRLNLNGNTLSG  506 (531)
Q Consensus       477 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g  506 (531)
                      .|++....+..+.++++|++|++++|.+..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccccccccccccccchhhhcc
Confidence            578887777889999999999999999973

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=1e-06  Score=79.74  Aligned_cols=97  Identities=28%  Similarity=0.409  Sum_probs=78.2

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..+  +.+|++|+.|++++|.+. .++ .+..++.|+.|++++|.+...  ..+..+++|+.|+++
T Consensus        63 nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~  136 (199)
T d2omxa2          63 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELS  136 (199)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECC
T ss_pred             CcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhh
Confidence            47899999999987543  899999999999999987 444 488999999999999988843  347889999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      +|++. .+| .+. .+.++..|++.+
T Consensus       137 ~n~l~-~~~-~l~-~~~~L~~L~l~~  159 (199)
T d2omxa2         137 SNTIS-DIS-ALS-GLTSLQQLNFSS  159 (199)
T ss_dssp             SSCCC-CCG-GGT-TCTTCSEEECCS
T ss_pred             hhhhc-ccc-ccc-cccccccccccc
Confidence            99987 555 343 355677887764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=1e-06  Score=80.39  Aligned_cols=97  Identities=24%  Similarity=0.321  Sum_probs=76.8

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|+|++|.+++..  .++.|++|+.|++++|++++ +| .+..+++|+.|++++|.+. .++ .+..+++|+.++++
T Consensus        69 ~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLG  142 (210)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEECC
T ss_pred             CCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccccccccc-ccc-cccccccccccccc
Confidence            3789999999998743  37889999999999999984 55 5888999999999999887 444 57889999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeecc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      .|.+++ ++ .+ ..+.+++.+++..
T Consensus       143 ~n~l~~-~~-~~-~~l~~L~~l~l~~  165 (210)
T d1h6ta2         143 NNKITD-IT-VL-SRLTKLDTLSLED  165 (210)
T ss_dssp             SSCCCC-CG-GG-GGCTTCSEEECCS
T ss_pred             cccccc-cc-cc-ccccccccccccc
Confidence            999884 32 23 3356677877764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.29  E-value=1.2e-06  Score=79.27  Aligned_cols=98  Identities=22%  Similarity=0.357  Sum_probs=80.5

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|++++|.+... + .+.+++.|+.|++++|.+...  ..+..+++|+.|++++|++. .+| .+..+++|+.|+++
T Consensus        85 ~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~  158 (199)
T d2omxa2          85 KLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFS  158 (199)
T ss_dssp             TCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECC
T ss_pred             ccccccccccccccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccc
Confidence            488999999988743 3 488999999999999998853  35788999999999999998 454 58899999999999


Q ss_pred             CCCCCCCCChhhhhhccccceeeeccc
Q 009603          501 GNTLSGRVPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       501 ~N~l~g~iP~~~~~~~~~l~~l~l~~~  527 (531)
                      +|+++ .+|+ +++ +.+++.|++++.
T Consensus       159 ~n~l~-~l~~-l~~-l~~L~~L~ls~N  182 (199)
T d2omxa2         159 SNQVT-DLKP-LAN-LTTLERLDISSN  182 (199)
T ss_dssp             SSCCC-CCGG-GTT-CTTCCEEECCSS
T ss_pred             ccccc-CCcc-ccC-CCCCCEEECCCC
Confidence            99999 4553 544 568899998853

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.29  E-value=8.2e-09  Score=94.15  Aligned_cols=79  Identities=25%  Similarity=0.400  Sum_probs=40.5

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++|.|+. ++ .+.+|++|+.|+|++|.++ .+|.....+++|+.|++++|+++ .++ .+..+++|+.|+|++
T Consensus        50 L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             CCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESE
T ss_pred             cceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-ccccccccccccccc
Confidence            5566666666653 32 3566666666666666665 44433333344555555555554 222 234444444444444


Q ss_pred             CCCC
Q 009603          502 NTLS  505 (531)
Q Consensus       502 N~l~  505 (531)
                      |+++
T Consensus       125 N~i~  128 (198)
T d1m9la_         125 NKIT  128 (198)
T ss_dssp             EECC
T ss_pred             chhc
Confidence            4444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.26  E-value=1.4e-06  Score=79.47  Aligned_cols=95  Identities=31%  Similarity=0.467  Sum_probs=73.2

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|++++|.+..  .+.+..+++|+.++++.|.++.  +..+.++++|+.+++++|++++ ++. +.++++|+.|+|++
T Consensus       114 L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         114 LKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSK  187 (210)
T ss_dssp             CCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCS
T ss_pred             ccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCC
Confidence            6678888887653  2357778888888888888874  3356788999999999999985 443 88999999999999


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |+++ .+| .+.+ +.+|+.|+++
T Consensus       188 N~i~-~l~-~l~~-l~~L~~L~Ls  208 (210)
T d1h6ta2         188 NHIS-DLR-ALAG-LKNLDVLELF  208 (210)
T ss_dssp             SCCC-BCG-GGTT-CTTCSEEEEE
T ss_pred             CCCC-CCh-hhcC-CCCCCEEEcc
Confidence            9998 676 3544 4678888875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.10  E-value=1.8e-06  Score=79.49  Aligned_cols=75  Identities=19%  Similarity=0.313  Sum_probs=64.4

Q ss_pred             EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  500 (531)
                      .++.|++++|.+....  .+.++++|+.|+|++|.+++ ++ .+.++++|+.|+|++|+++ .+|. ++++++|+.|+|+
T Consensus       152 ~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEE
T ss_pred             ccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEee
Confidence            3788999999987543  38899999999999999985 44 4889999999999999999 4553 8899999999997


Q ss_pred             C
Q 009603          501 G  501 (531)
Q Consensus       501 ~  501 (531)
                      +
T Consensus       226 n  226 (227)
T d1h6ua2         226 N  226 (227)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.01  E-value=1.5e-07  Score=85.42  Aligned_cols=86  Identities=21%  Similarity=0.277  Sum_probs=71.2

Q ss_pred             cCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhh
Q 009603          435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG  514 (531)
Q Consensus       435 ~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~  514 (531)
                      .++..+..|++|+.|+|++|.++ .++ .+..|++|+.|+|++|+++ .+|.....+++|+.|++++|+++ .++ .+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccc
Confidence            34667999999999999999999 565 6889999999999999998 77776666778999999999998 564 3443


Q ss_pred             hccccceeeecc
Q 009603          515 RLLHRASFKYVW  526 (531)
Q Consensus       515 ~~~~l~~l~l~~  526 (531)
                       +.+++.|++++
T Consensus       114 -l~~L~~L~L~~  124 (198)
T d1m9la_         114 -LVNLRVLYMSN  124 (198)
T ss_dssp             -HHHSSEEEESE
T ss_pred             -ccccccccccc
Confidence             45788888874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.92  E-value=1.1e-05  Score=78.10  Aligned_cols=89  Identities=27%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (531)
Q Consensus       422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  501 (531)
                      ++.|+|++++|+ .+|+.   +++|++|+|++|+|+ .+|..+   .+|+.|++++|+++ .++..   .+.|++|+|++
T Consensus        40 l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          40 AHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             CSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCS
T ss_pred             CCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccccc
Confidence            345566666655 24432   345566666666665 555432   34555555555554 33321   12355555555


Q ss_pred             CCCCCCCChhhhhhccccceeeec
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYV  525 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~  525 (531)
                      |.+. .+|. + ..+.+++.|++.
T Consensus       108 n~l~-~lp~-~-~~l~~L~~L~l~  128 (353)
T d1jl5a_         108 NQLE-KLPE-L-QNSSFLKIIDVD  128 (353)
T ss_dssp             SCCS-SCCC-C-TTCTTCCEEECC
T ss_pred             cccc-cccc-h-hhhccceeeccc
Confidence            5555 4443 2 223344444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.4e-05  Score=73.84  Aligned_cols=99  Identities=13%  Similarity=0.129  Sum_probs=77.2

Q ss_pred             EEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEEeccC-
Q 009603          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNLNG-  501 (531)
Q Consensus       424 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L~~-  501 (531)
                      .++.++.+++ .+|..+.  ++++.|+|++|.++...+..|.++++|++|+|++|.+...+| ..|.+++++++|.+.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            5778888888 6776553  579999999999995545578999999999999999987665 4688899999998864 


Q ss_pred             CCCCCCCChhhhhhccccceeeecc
Q 009603          502 NTLSGRVPAALGGRLLHRASFKYVW  526 (531)
Q Consensus       502 N~l~g~iP~~~~~~~~~l~~l~l~~  526 (531)
                      |++.. ++......+.+++.+++..
T Consensus        89 n~l~~-~~~~~~~~l~~L~~l~l~~  112 (242)
T d1xwdc1          89 NNLLY-INPEAFQNLPNLQYLLISN  112 (242)
T ss_dssp             TTCCE-ECTTSEECCTTCCEEEEES
T ss_pred             ccccc-cccccccccccccccccch
Confidence            67774 4444445566788888864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=4.7e-06  Score=72.66  Aligned_cols=87  Identities=26%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             ccccCCCCCCEEEccCCccCcc--CCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCEEeccCCCCCCCCCh----
Q 009603          438 NGISKLRHLQSINLSGNSIRGA--IPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLNGNTLSGRVPA----  510 (531)
Q Consensus       438 ~~l~~L~~L~~L~Ls~N~l~g~--ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~L~~N~l~g~iP~----  510 (531)
                      .....++.|+.|+|++|+++..  ++..+..|++|+.|+|++|+++ .+++ ...+..+|+.|+|++|.+......    
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            3345688899999999999843  3445677899999999999998 4543 333455789999999998866553    


Q ss_pred             --hhhhhccccceeeec
Q 009603          511 --ALGGRLLHRASFKYV  525 (531)
Q Consensus       511 --~~~~~~~~l~~l~l~  525 (531)
                        .+...+.++..||=.
T Consensus       138 ~~~i~~~~P~L~~LDg~  154 (162)
T d1koha1         138 ISAIRERFPKLLRLDGH  154 (162)
T ss_dssp             HHHHHTTSTTCCEETTE
T ss_pred             HHHHHHHCCCCCEECcC
Confidence              234455667776633

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=97.64  E-value=2e-05  Score=67.04  Aligned_cols=79  Identities=15%  Similarity=0.293  Sum_probs=58.4

Q ss_pred             eEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeccCCceeeecCCceeeEEEEEEeeecCceEEEEEcc-
Q 009603          270 LQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHP-  348 (531)
Q Consensus       270 l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~~l~i~~~p-  348 (531)
                      ..|.+++ |+|.|.|.++|.|.         +..++.++|...+..+     .+.   ...+.+.|++++|+|+|.|.. 
T Consensus        65 ~~f~v~v-PnG~Y~Vtv~~Gd~---------~~~~~~~eg~~~~~~~-----~g~---~~~~~~~V~VtDG~L~l~ft~~  126 (146)
T d2o14a1          65 NTFNVDL-PNGLYEVKVTLGNT---------ARASVAAEGVFQVINM-----TGD---GAEDTFQIPVTDGQLNLLVTEG  126 (146)
T ss_dssp             CCEEEEC-CSEEEEEEEEESSC---------SEEEEEETTEEEEEEE-----EST---TCEEEEEEEECSSEEEEEEEES
T ss_pred             ceEEEEC-CCCeEEEEEEEecC---------CCccEEEeeEEecccc-----CCc---cEEEEEEEEEECCeEEEEEecC
Confidence            5788888 58999999999983         1246888887665432     333   234567788999999999974 


Q ss_pred             CCCchhhhhhHhhhhhhh
Q 009603          349 KGGSHAIINAIEVFEIIA  366 (531)
Q Consensus       349 ~~~~~p~lnalei~~~~~  366 (531)
                      ..+..|.||+|||-++.+
T Consensus       127 ~~G~~~~in~l~I~~~~d  144 (146)
T d2o14a1         127 KAGTAFTLSALKIKKLSD  144 (146)
T ss_dssp             STTSCCEEEEEEEEEEES
T ss_pred             CCCCccEEEEEEEEeccc
Confidence            445679999999977643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.52  E-value=9.6e-05  Score=71.27  Aligned_cols=74  Identities=26%  Similarity=0.394  Sum_probs=58.1

Q ss_pred             EEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCC
Q 009603          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT  503 (531)
Q Consensus       424 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~  503 (531)
                      ..++..+.+.+.    ...+++|+.|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|++|+|++|+
T Consensus       268 ~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         268 YLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             EEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred             ccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCc
Confidence            455666655543    234678999999999998 67754   578999999999998 78864   4679999999999


Q ss_pred             CCCCCCh
Q 009603          504 LSGRVPA  510 (531)
Q Consensus       504 l~g~iP~  510 (531)
                      ++ .+|.
T Consensus       336 L~-~lp~  341 (353)
T d1jl5a_         336 LR-EFPD  341 (353)
T ss_dssp             CS-SCCC
T ss_pred             CC-CCCc
Confidence            98 7885

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.2e-05  Score=74.80  Aligned_cols=108  Identities=20%  Similarity=0.193  Sum_probs=78.3

Q ss_pred             eEEEEEEccCCCCccc-CcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC-cCCCC-CcccccCCCCCCE
Q 009603          420 WVIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGS-IPESLGQLTALRR  496 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~-iP~~l~~l~~L~~  496 (531)
                      ..++.|+|+++.+... +...+..+++|++|+|+++.++...+..++++++|+.|+|+++ .++.. +..-..++++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3578899998887654 3455778899999999999998888888899999999999884 55421 2222456889999


Q ss_pred             EeccCC-CCCC-CCChhhhhhccccceeeeccc
Q 009603          497 LNLNGN-TLSG-RVPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       497 L~L~~N-~l~g-~iP~~~~~~~~~l~~l~l~~~  527 (531)
                      |+|+++ .++. .++..+.....+++.|+++.+
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccccccccccccchhhhcccccccchhhhccc
Confidence            999884 4442 233445555677888888743

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=1.4e-05  Score=69.46  Aligned_cols=78  Identities=24%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             EEEEEEccCCCCccc--CcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCccc-------ccCC
Q 009603          421 VIDGLGLDNQGLRGF--LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-------LGQL  491 (531)
Q Consensus       421 ~l~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-------l~~l  491 (531)
                      .++.|+|++|.|+..  ++..+..+++|+.|+|++|.++..-+-...+...|+.|+|++|.+.......       +..+
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~  145 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF  145 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHC
Confidence            478999999999864  3456788999999999999999433323334557999999999998765532       5678


Q ss_pred             CCCCEEe
Q 009603          492 TALRRLN  498 (531)
Q Consensus       492 ~~L~~L~  498 (531)
                      ++|+.||
T Consensus       146 P~L~~LD  152 (162)
T d1koha1         146 PKLLRLD  152 (162)
T ss_dssp             TTCCEET
T ss_pred             CCCCEEC
Confidence            9999886

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=1.4e-05  Score=76.28  Aligned_cols=108  Identities=21%  Similarity=0.278  Sum_probs=76.0

Q ss_pred             eEEEEEEccCCCCcccCcccccCCCCCCEEEccC-CccCcc-CCccccCCCCCCEEecCCC-cCCC-CCcccccC-CCCC
Q 009603          420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSG-NSIRGA-IPSSLGTIASLEVLDLSYN-FFNG-SIPESLGQ-LTAL  494 (531)
Q Consensus       420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~-ip~~l~~l~~L~~L~Ls~N-~l~g-~iP~~l~~-l~~L  494 (531)
                      ..++.|+|+++.+.+.....++.+++|+.|+|++ +.++.. +..-...+++|+.|+|+++ .++. .++..+.. .++|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            4588999999999888888899999999999998 456532 2233457899999999985 4442 12223333 4789


Q ss_pred             CEEeccCC--CCCCCCChhhhhhccccceeeeccc
Q 009603          495 RRLNLNGN--TLSGRVPAALGGRLLHRASFKYVWA  527 (531)
Q Consensus       495 ~~L~L~~N--~l~g~iP~~~~~~~~~l~~l~l~~~  527 (531)
                      +.|++++.  .++..--..+...+.+++.|+++.+
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             chhhhcccccccccccccccccccccccccccccc
Confidence            99999864  3442222334455678999999753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=3.4e-05  Score=77.28  Aligned_cols=59  Identities=22%  Similarity=0.261  Sum_probs=24.5

Q ss_pred             EEEEEccCCCCcccC-cccccCCCCCCEEEccCCccCc----cCCccccCCCCCCEEecCCCcC
Q 009603          422 IDGLGLDNQGLRGFL-PNGISKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFF  480 (531)
Q Consensus       422 l~~L~L~~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l  480 (531)
                      |+.|+|+.|++++.- ..-+..+++|+.|+|++|.++-    .+...+..+++|+.|||++|++
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i   67 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL   67 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcC
Confidence            444555555544311 1223334444444444444431    1222334444444444444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.02  E-value=8.2e-05  Score=72.45  Aligned_cols=60  Identities=18%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             EEEEEccCCCCccc-----CcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCC
Q 009603          422 IDGLGLDNQGLRGF-----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFN  481 (531)
Q Consensus       422 l~~L~L~~n~l~g~-----~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~  481 (531)
                      ++.|+|++|.+...     +...+..+++|+.|+|++|.++..    +...+..+++|+.|+|++|.++
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            44555555554421     222344455555555555555321    2233445555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=5.8e-05  Score=75.50  Aligned_cols=91  Identities=23%  Similarity=0.188  Sum_probs=42.9

Q ss_pred             EEEEEccCCCCccc----Cccccc-CCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCCCcc----cc
Q 009603          422 IDGLGLDNQGLRGF----LPNGIS-KLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPE----SL  488 (531)
Q Consensus       422 l~~L~L~~n~l~g~----~p~~l~-~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~iP~----~l  488 (531)
                      ++.|+|++|.+...    +...+. ..+.|+.|+|++|.++..    +...+..+++|+.|+|++|+|+..-..    .+
T Consensus       342 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  421 (460)
T d1z7xw1         342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  421 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             hhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHH
Confidence            55566666655421    222222 234456666666665532    333344555666666666655532111    12


Q ss_pred             c-CCCCCCEEeccCCCCCCCCChhh
Q 009603          489 G-QLTALRRLNLNGNTLSGRVPAAL  512 (531)
Q Consensus       489 ~-~l~~L~~L~L~~N~l~g~iP~~~  512 (531)
                      . +...|+.|++.+|.+....+..+
T Consensus       422 ~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         422 RQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             TSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             HhCCCccCEEECCCCCCCHHHHHHH
Confidence            1 22345666666665554443333

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=96.95  E-value=0.0035  Score=52.68  Aligned_cols=80  Identities=19%  Similarity=0.294  Sum_probs=59.5

Q ss_pred             cceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCCccceEEEEEEEecCCeEEEEEeecCC-
Q 009603           84 ENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGH-  162 (531)
Q Consensus        84 ~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~~~~~~~E~~~~~~~~~l~v~f~~~~~-  162 (531)
                      ...|.+ ..++|.|.|+++|.-        ....+|.+.|   ...+.++  .....-+.+.+.+++++|.|.|..... 
T Consensus        64 ~~~f~v-~vPnG~Y~Vtv~~Gd--------~~~~~~~~eg---~~~~~~~--~g~~~~~~~~V~VtDG~L~l~ft~~~~G  129 (146)
T d2o14a1          64 NNTFNV-DLPNGLYEVKVTLGN--------TARASVAAEG---VFQVINM--TGDGAEDTFQIPVTDGQLNLLVTEGKAG  129 (146)
T ss_dssp             SCCEEE-ECCSEEEEEEEEESS--------CSEEEEEETT---EEEEEEE--ESTTCEEEEEEEECSSEEEEEEEESSTT
T ss_pred             CceEEE-ECCCCeEEEEEEEec--------CCCccEEEee---EEecccc--CCccEEEEEEEEEECCeEEEEEecCCCC
Confidence            457888 455899999999874        1245788887   4444333  235567788889999999999976554 


Q ss_pred             CCCcEEeEEEEEcCC
Q 009603          163 GDPAILSLEILQVDD  177 (531)
Q Consensus       163 ~~pfIsaiEl~~l~~  177 (531)
                      ..|-||+|||.+.++
T Consensus       130 ~~~~in~l~I~~~~d  144 (146)
T d2o14a1         130 TAFTLSALKIKKLSD  144 (146)
T ss_dssp             SCCEEEEEEEEEEES
T ss_pred             CccEEEEEEEEeccc
Confidence            569999999998765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.91  E-value=8.3e-05  Score=72.37  Aligned_cols=105  Identities=24%  Similarity=0.302  Sum_probs=76.4

Q ss_pred             EEEEEccCCCCcc----cCcccccCCCCCCEEEccCCccCcc-----CCccccCCCCCCEEecCCCcCCCC----Ccccc
Q 009603          422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA-----IPSSLGTIASLEVLDLSYNFFNGS----IPESL  488 (531)
Q Consensus       422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l  488 (531)
                      ++.+.+++|.+..    .+...+..+..|+.|+|++|.++..     +...+..+++|+.|+|++|.++..    +...+
T Consensus       160 L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         160 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             cceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc
Confidence            5678888887752    2344567788999999999998742     334577889999999999998632    44567


Q ss_pred             cCCCCCCEEeccCCCCCCCCChhhhhhc-----cccceeeecc
Q 009603          489 GQLTALRRLNLNGNTLSGRVPAALGGRL-----LHRASFKYVW  526 (531)
Q Consensus       489 ~~l~~L~~L~L~~N~l~g~iP~~~~~~~-----~~l~~l~l~~  526 (531)
                      ..+++|++|+|++|.+++.-...++..+     ..+..|++++
T Consensus       240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~  282 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY  282 (344)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred             cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCC
Confidence            7889999999999998754334444322     3467788775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.95  E-value=0.0011  Score=57.27  Aligned_cols=84  Identities=17%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             EEEEEccCC-CCccc----CcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCC----Ccccc
Q 009603          422 IDGLGLDNQ-GLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL  488 (531)
Q Consensus       422 l~~L~L~~n-~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l  488 (531)
                      +++|+|+++ .++..    +-..+...+.|+.|+|++|.+...    +...+...+.|+.|+|++|.++..    +-..+
T Consensus        17 L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL   96 (167)
T d1pgva_          17 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST   96 (167)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred             CcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHH
Confidence            667777753 34321    223455667777777777777532    223344566777777777777632    12245


Q ss_pred             cCCCCCCEEeccCCCCC
Q 009603          489 GQLTALRRLNLNGNTLS  505 (531)
Q Consensus       489 ~~l~~L~~L~L~~N~l~  505 (531)
                      ...+.|++|+|++|.+.
T Consensus        97 ~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          97 LVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTTCCCSEEECCCCSSC
T ss_pred             HhCCcCCEEECCCCcCC
Confidence            55667777777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.99  E-value=0.005  Score=52.88  Aligned_cols=86  Identities=19%  Similarity=0.191  Sum_probs=60.0

Q ss_pred             cCCCCCCEEEccCC-ccCcc----CCccccCCCCCCEEecCCCcCCC----CCcccccCCCCCCEEeccCCCCCCCCChh
Q 009603          441 SKLRHLQSINLSGN-SIRGA----IPSSLGTIASLEVLDLSYNFFNG----SIPESLGQLTALRRLNLNGNTLSGRVPAA  511 (531)
Q Consensus       441 ~~L~~L~~L~Ls~N-~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~l~g~iP~~  511 (531)
                      .+.+.|+.|+|+++ .++..    +-..+...+.|+.|+|++|.+.-    .+...+...+.|++|+|++|.++..--..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45688999999974 56532    23457778899999999998873    22234556789999999999988433233


Q ss_pred             hhhhcc---ccceeeecc
Q 009603          512 LGGRLL---HRASFKYVW  526 (531)
Q Consensus       512 ~~~~~~---~l~~l~l~~  526 (531)
                      +...+.   .++.|++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHhCCcCCEEECCC
Confidence            444333   477888764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.34  E-value=0.0077  Score=51.43  Aligned_cols=61  Identities=21%  Similarity=0.357  Sum_probs=29.7

Q ss_pred             cccCCCCCCEEEccCCccCccC----CccccCCCCCCEEecCCCcCCCC----CcccccCCCCCCEEec
Q 009603          439 GISKLRHLQSINLSGNSIRGAI----PSSLGTIASLEVLDLSYNFFNGS----IPESLGQLTALRRLNL  499 (531)
Q Consensus       439 ~l~~L~~L~~L~Ls~N~l~g~i----p~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L  499 (531)
                      .+...++|+.|+|++|.++..-    -..+...+.|+.|+++.|.+...    +-..+...++|+.++|
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEee
Confidence            3445556666666666554321    12234455566666666655422    1123444555554433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.85  E-value=0.068  Score=45.14  Aligned_cols=68  Identities=22%  Similarity=0.246  Sum_probs=49.9

Q ss_pred             ccCCCCCCEEEccC-CccCcc----CCccccCCCCCCEEecCCCcCCCCCc----ccccCCCCCCEEeccCCCCCCC
Q 009603          440 ISKLRHLQSINLSG-NSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIP----ESLGQLTALRRLNLNGNTLSGR  507 (531)
Q Consensus       440 l~~L~~L~~L~Ls~-N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~iP----~~l~~l~~L~~L~L~~N~l~g~  507 (531)
                      ..+.+.|+.|+|++ +.++..    +-..+...++|+.|+|++|.++..--    ..+...+.|+.|++++|.+...
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            34567899999987 556532    23446678999999999998874322    3455678999999999998743