Citrus Sinensis ID: 009610

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-

MALSNASSTLSSKSLYANTHTLASKPHQPNFSLHPANTTKPRSLVQPITAVHAAQPAKNSAAVKESSSSPAKASGKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRLGTQRLHSLGL

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEEcccccHHHHHHHHHHHccccccccEEEEEcccHHHHHHHcHHHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccEccccEccccccccEccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcHHHHHccHHHHHHccccccccccccccEEEEEccccccccccEEEEHcccccccEEEEcccccHHHHHHHHHHHccccccccEEEEEEccHHHHHHHcHHHHHHHHHcccEEEEEEcccccccEEcccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEcccccHccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHccc

malsnasstlsskslyanthtlaskphqpnfslhpanttkprslvqpitavhaaqpaknsaavkesssspakasgkwalegwktkkalqlpeypdkaQLETVLKTLedfpplvfaGEARSLEERLAEAAMGNafllqggdcaeSFKEFNANNIRDTFRVLLQMGVVLmfggqmpiikvgrmagqfakprsdpfevkngvklpsykgdningdafdeksrvpdpeRLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDfaehseqgdrYQELAHRVDEALGFMAAagltldhpamtstefwtsheclllpyeqaltrrdstsgqyydcsahmLWVGERTRQLDGAHVEFLRGIanplgikvsdkmdpnELVKLVEIfnphnkagRITIICRMGAENMRVKLPHLIRAVRREGQIVTwvcdpmhgntikapcglktrpFDAILAEVRAFFDvheqegshpggihlemtgqnvteciggsrtvtfddlssryhthcdprlnasqSLELAFIIAERLRKKrlgtqrlhslgl

malsnasstlsSKSLYANTHTLASKPHQPNFSLHPANTTKPRSLVQPITAVHAAQPaknsaavkesssspakasgkwalEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAkprsdpfevkngvklpsykgdningdafdeksrvpdPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIanplgikvsdkMDPNELVKLVeifnphnkaGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHcdprlnasqSLELAFIIAERLrkkrlgtqrlhslgl

MalsnasstlsskslyaNTHTLASKPHQPNFSLHPANTTKPRSLVQPITAVHAAQPAKNSAAVKESSSSPAKASGKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGearsleerlaeaaMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRLGTQRLHSLGL

****************************************************************************WALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQF***************************************RLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR**************

*********************************************************************************WKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFA************VKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIA******************

***********SKSLYANTHTLASKPHQPNFSLHPANTTKPRSLVQPITAVH************************WALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRLGTQRLHSLGL

*******************************************************************************EGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRLG*********

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		531	2.2.26 [Sep-21-2011]
P29976		525	Phospho-2-dehydro-3-deoxy	yes	no	0.986	0.998	0.796	0.0
P27608		542	Phospho-2-dehydro-3-deoxy	N/A	no	0.922	0.904	0.814	0.0
P37216		541	Phospho-2-dehydro-3-deoxy	N/A	no	0.973	0.955	0.777	0.0
P21357		538	Phospho-2-dehydro-3-deoxy	N/A	no	0.973	0.960	0.775	0.0
P37822		511	Phospho-2-dehydro-3-deoxy	N/A	no	0.928	0.964	0.810	0.0
P37215		511	Phospho-2-dehydro-3-deoxy	N/A	no	0.928	0.964	0.804	0.0
Q75LR2		554	Phospho-2-dehydro-3-deoxy	no	no	0.905	0.868	0.776	0.0
Q00218		507	Phospho-2-dehydro-3-deoxy	no	no	0.945	0.990	0.759	0.0
Q75W16		539	Phospho-2-dehydro-3-deoxy	yes	no	0.879	0.866	0.820	0.0
A0MH68		493	Probable phospho-2-dehydr	N/A	no	0.898	0.967	0.646	0.0

>sp\|P29976\|AROF_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2	Back alignment and function desciption

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/526 (79%), Positives = 467/526 (88%), Gaps = 2/526 (0%)

Query: 1   MALSNASSTLSSKSLYANTHTLASKPHQPNFSLHPANTTKPRSLVQPITAVHAAQPAKNS 60
           MALSNASS LS++S+Y    +      Q +F+ HPA  TKP+S V  +TAVHAA+PA+N+
Sbjct: 1   MALSNASS-LSTRSIYGGDLSHRPSNRQSSFTFHPAVNTKPKS-VNLVTAVHAAEPARNA 58

Query: 61  AAVKESSSSPAKASGKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARS 120
            +VKES +S +  + KW  E WK KKALQLP+YP+  +LE+VLKT+E FPP+VFAGEAR+
Sbjct: 59  VSVKESVASSSSGALKWTPESWKLKKALQLPDYPNANELESVLKTIEAFPPIVFAGEARN 118

Query: 121 LEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGR 180
           LEERLA+AA+G AFLLQGGDCAESFKEFNA NIRDTFRVLLQM +VL FGGQ+P+IKVGR
Sbjct: 119 LEERLADAAVGKAFLLQGGDCAESFKEFNATNIRDTFRVLLQMSIVLTFGGQVPVIKVGR 178

Query: 181 MAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLL 240
           MAGQFAKPRSD FE K+GVKLPSYKGDNINGD FDEKSR+PDP R+IRAY QSAATLNLL
Sbjct: 179 MAGQFAKPRSDAFEEKDGVKLPSYKGDNINGDTFDEKSRIPDPNRMIRAYTQSAATLNLL 238

Query: 241 RSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTST 300
           R+FATGGYAA+QRVTQWNLDF E SEQ DRYQELA+RVDEALGFM+A GL  DHP MT+T
Sbjct: 239 RAFATGGYAAIQRVTQWNLDFVEQSEQADRYQELANRVDEALGFMSACGLGTDHPLMTTT 298

Query: 301 EFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLG 360
           +F+TSHECLLLPYEQ+LTR DSTSG YYDCSAHM+W GERTRQLDGAHVEFLRGIANPLG
Sbjct: 299 DFYTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMVWCGERTRQLDGAHVEFLRGIANPLG 358

Query: 361 IKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWV 420
           IKVS+KMDP ELVKLVEI NP+NK GRIT+I RMGAENMRVKLPHLIRAVRR GQIVTWV
Sbjct: 359 IKVSNKMDPFELVKLVEILNPNNKPGRITVIVRMGAENMRVKLPHLIRAVRRSGQIVTWV 418

Query: 421 CDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGS 480
           CDPMHGNTIKAPCGLKTR FD+ILAEVRAF DVHEQEGSH GGIHLEMTGQNVTECIGGS
Sbjct: 419 CDPMHGNTIKAPCGLKTRAFDSILAEVRAFLDVHEQEGSHAGGIHLEMTGQNVTECIGGS 478

Query: 481 RTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRLGTQRL 526
           RTVT+DDLSSRYHTHCDPRLNASQSLELAFI+AERLRK+R G+QR+
Sbjct: 479 RTVTYDDLSSRYHTHCDPRLNASQSLELAFIVAERLRKRRTGSQRV 524

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 4

>sp\|P27608\|AROF_TOBAC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1	Back alignment and function description

>sp\|P37216\|AROG_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1	Back alignment and function description

>sp\|P21357\|AROF_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2	Back alignment and function description

>sp\|P37822\|AROG_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1	Back alignment and function description

>sp\|P37215\|AROF_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1	Back alignment and function description

>sp\|Q75LR2\|AROF_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2	Back alignment and function description

>sp\|Q00218\|AROG_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2	Back alignment and function description

>sp\|Q75W16\|AROG_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1	Back alignment and function description

>sp\|A0MH68\|AROF_CATRO Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		531
255581748		533	Phospho-2-dehydro-3-deoxyheptonate aldol	0.986	0.983	0.857	0.0
222136861		532	3-deoxy-D-arabino-heptulosonate-7-phosph	0.994	0.992	0.842	0.0
359496691		532	PREDICTED: phospho-2-dehydro-3-deoxyhept	0.994	0.992	0.841	0.0
224083602		525	2-dehydro-3-deoxyphosphoheptonate aldola	0.979	0.990	0.845	0.0
224084626		531	2-dehydro-3-deoxyphosphoheptonate aldola	0.966	0.966	0.805	0.0
224063263		531	2-dehydro-3-deoxyphosphoheptonate aldola	0.966	0.966	0.799	0.0
2398679		535	3-deoxy-D-arabino-heptulosonate 7-phosph	0.973	0.966	0.808	0.0
76782190		539	putative 3-deoxy-D-arabino-heptulosonate	0.973	0.959	0.786	0.0
262181539		548	3-deoxy-D-arabino-heptulosonate-7-phosph	0.979	0.948	0.776	0.0
2546988		535	2-dehydro-3-deoxyphosphoheptonate aldola	0.981	0.973	0.802	0.0

>gi\|255581748\|ref\|XP_002531676.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis] gi\|223528707\|gb\|EEF30720.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/534 (85%), Positives = 486/534 (91%), Gaps = 10/534 (1%)

Query: 6   ASSTLSSKSLYANTHTLASKP----HQPNFSLHPANTTKPRSLVQPITAVHAAQPAKNS- 60
           A STLSSKSLYAN       P    HQ +FSL P N+ KPRSL   ITAVHAA+P KNS 
Sbjct: 2   ALSTLSSKSLYANNPRTVFNPNQQHHQSSFSLLPGNS-KPRSLPS-ITAVHAAEPTKNST 59

Query: 61  AAVKESSSSP---AKASGKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGE 117
            +VK + SSP   A  +GKW ++ WKTKKALQLPEYPD  +LE VLKT+E FPP+VFAGE
Sbjct: 60  VSVKTTPSSPPVAAPGTGKWTVDSWKTKKALQLPEYPDADKLENVLKTIEAFPPIVFAGE 119

Query: 118 ARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIK 177
           ARSLEE+LA+AAMGNAFLLQGGDCAESFKEF+ANNIRDTFR+LLQMGVVLMFGGQMP+IK
Sbjct: 120 ARSLEEKLADAAMGNAFLLQGGDCAESFKEFSANNIRDTFRILLQMGVVLMFGGQMPVIK 179

Query: 178 VGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATL 237
           VGRMAGQFAKPRSDPFE KNGVKLPSYKGDNINGDAFDEKSR+PDPERLIRAYCQSAATL
Sbjct: 180 VGRMAGQFAKPRSDPFEEKNGVKLPSYKGDNINGDAFDEKSRIPDPERLIRAYCQSAATL 239

Query: 238 NLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAM 297
           NLLR+FATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAA GLT++HP M
Sbjct: 240 NLLRAFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAATGLTVEHPVM 299

Query: 298 TSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIAN 357
           T+TEFWTSHECL LPYEQALTR DSTSG YYDCSAHMLW GERTRQLDGAH+EFLRGI+N
Sbjct: 300 TTTEFWTSHECLHLPYEQALTRLDSTSGLYYDCSAHMLWCGERTRQLDGAHMEFLRGISN 359

Query: 358 PLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIV 417
           PLGIKVS+KMDPNELVKL+EI NP+NK GRITIICRMGAENMRVKLPHLIRAVRR GQIV
Sbjct: 360 PLGIKVSNKMDPNELVKLIEILNPNNKPGRITIICRMGAENMRVKLPHLIRAVRRAGQIV 419

Query: 418 TWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 477
           TWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI
Sbjct: 420 TWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 479

Query: 478 GGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRLGTQRLHSLGL 531
           GGSRTVTFDDL SRYHTHCDPRLNASQSLELAFIIAERLRK+R+GTQRL SL L
Sbjct: 480 GGSRTVTFDDLGSRYHTHCDPRLNASQSLELAFIIAERLRKRRIGTQRLLSLSL 533

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|222136861\|gb\|ACM45080.1\| 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 01 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359496691\|ref\|XP_003635302.1\| PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224083602\|ref\|XP_002307072.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa] gi\|222856521\|gb\|EEE94068.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224084626\|ref\|XP_002307364.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa] gi\|118486265\|gb\|ABK94974.1\| unknown [Populus trichocarpa] gi\|222856813\|gb\|EEE94360.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224063263\|ref\|XP_002301067.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa] gi\|222842793\|gb\|EEE80340.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|2398679\|emb\|CAA75092.1\| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia]	Back alignment and taxonomy information

>gi\|76782190\|gb\|ABA54865.1\| putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 3 [Fagus sylvatica]	Back alignment and taxonomy information

>gi\|262181539\|gb\|ACY29660.1\| 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 02 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|2546988\|emb\|CAA75386.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase [Morinda citrifolia]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		531
TAIR\|locus:2005525		525	DHS1 "3-deoxy-D-arabino-heptul	0.949	0.96	0.785	1.3e-217
TAIR\|locus:2009547		527	AT1G22410 [Arabidopsis thalian	0.945	0.952	0.780	8.7e-214
TAIR\|locus:2005526		507	DHS2 "3-deoxy-d-arabino-heptul	0.909	0.952	0.778	1.4e-208
TIGR_CMR\|SPO_1942		465	SPO_1942 "3-deoxy-7-phosphohep	0.860	0.982	0.558	7.4e-137
TIGR_CMR\|CJE_0816		446	CJE_0816 "3-deoxy-7-phosphohep	0.834	0.993	0.525	1.1e-126
ASPGD\|ASPL0000049433		482	AN1673 [Emericella nidulans (t	0.423	0.466	0.478	2.2e-105
UNIPROTKB\|O53512		462	aroG "Phospho-2-dehydro-3-deox	0.834	0.958	0.464	1.2e-104
UNIPROTKB\|A0R033		464	aroG "Phospho-2-dehydro-3-deox	0.811	0.928	0.475	8.6e-104
UNIPROTKB\|G4N683		466	MGG_08596 "Phospho-2-dehydro-3	0.828	0.944	0.425	4.7e-96

TAIR\|locus:2005525 DHS1 "3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2102 (745.0 bits), Expect = 1.3e-217, P = 1.3e-217
 Identities = 398/507 (78%), Positives = 442/507 (87%)

Query:    22 LASKP--HQPNFSLHPANTTKPRSLVQPITAVHAAQPAKNSAAVKESSSSPAKASGKWAL 79
             L+ +P   Q +F+ HPA  TKP+S V  +TAVHAA+PA+N+ +VKES +S +  + KW  
Sbjct:    19 LSHRPSNRQSSFTFHPAVNTKPKS-VNLVTAVHAAEPARNAVSVKESVASSSSGALKWTP 77

Query:    80 EGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGXXXXXXXXXXXXXMGNAFLLQGG 139
             E WK KKALQLP+YP+  +LE+VLKT+E FPP+VFAG             +G AFLLQGG
Sbjct:    78 ESWKLKKALQLPDYPNANELESVLKTIEAFPPIVFAGEARNLEERLADAAVGKAFLLQGG 137

Query:   140 DCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGV 199
             DCAESFKEFNA NIRDTFRVLLQM +VL FGGQ+P+IKVGRMAGQFAKPRSD FE K+GV
Sbjct:   138 DCAESFKEFNATNIRDTFRVLLQMSIVLTFGGQVPVIKVGRMAGQFAKPRSDAFEEKDGV 197

Query:   200 KLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNL 259
             KLPSYKGDNINGD FDEKSR+PDP R+IRAY QSAATLNLLR+FATGGYAA+QRVTQWNL
Sbjct:   198 KLPSYKGDNINGDTFDEKSRIPDPNRMIRAYTQSAATLNLLRAFATGGYAAIQRVTQWNL 257

Query:   260 DFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTR 319
             DF E SEQ DRYQELA+RVDEALGFM+A GL  DHP MT+T+F+TSHECLLLPYEQ+LTR
Sbjct:   258 DFVEQSEQADRYQELANRVDEALGFMSACGLGTDHPLMTTTDFYTSHECLLLPYEQSLTR 317

Query:   320 RDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIF 379
              DSTSG YYDCSAHM+W GERTRQLDGAHVEFLRGIANPLGIKVS+KMDP ELVKLVEI 
Sbjct:   318 LDSTSGLYYDCSAHMVWCGERTRQLDGAHVEFLRGIANPLGIKVSNKMDPFELVKLVEIL 377

Query:   380 NPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRP 439
             NP+NK GRIT+I RMGAENMRVKLPHLIRAVRR GQIVTWVCDPMHGNTIKAPCGLKTR 
Sbjct:   378 NPNNKPGRITVIVRMGAENMRVKLPHLIRAVRRSGQIVTWVCDPMHGNTIKAPCGLKTRA 437

Query:   440 FDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPR 499
             FD+ILAEVRAF DVHEQEGSH GGIHLEMTGQNVTECIGGSRTVT+DDLSSRYHTHCDPR
Sbjct:   438 FDSILAEVRAFLDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTYDDLSSRYHTHCDPR 497

Query:   500 LNASQSLELAFIIAERLRKKRLGTQRL 526
             LNASQSLELAFI+AERLRK+R G+QR+
Sbjct:   498 LNASQSLELAFIVAERLRKRRTGSQRV 524

GO:0003849 "3-deoxy-7-phosphoheptulonate synthase activity" evidence=IEA;IGI;IDA;TAS

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;TAS

GO:0009423 "chorismate biosynthetic process" evidence=IGI;IDA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009617 "response to bacterium" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0005739 "mitochondrion" evidence=IDA

TAIR\|locus:2009547 AT1G22410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2005526 DHS2 "3-deoxy-d-arabino-heptulosonate 7-phosphate synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_1942 SPO_1942 "3-deoxy-7-phosphoheptulonate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|CJE_0816 CJE_0816 "3-deoxy-7-phosphoheptulonate synthase" [Campylobacter jejuni RM1221 (taxid:195099)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000049433 AN1673 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|O53512 aroG "Phospho-2-dehydro-3-deoxyheptonate aldolase AroG" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|A0R033 aroG "Phospho-2-dehydro-3-deoxyheptonate aldolase AroG" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N683 MGG_08596 "Phospho-2-dehydro-3-deoxyheptonate aldolase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A0MH68	AROF_CATRO	2, ., 5, ., 1, ., 5, 4	0.6463	0.8983	0.9675	N/A	no
P29976	AROF_ARATH	2, ., 5, ., 1, ., 5, 4	0.7965	0.9868	0.9980	yes	no
P80574	AROF_STRCO	2, ., 5, ., 1, ., 5, 4	0.5342	0.8210	0.9688	yes	no
P27608	AROF_TOBAC	2, ., 5, ., 1, ., 5, 4	0.8147	0.9227	0.9040	N/A	no
Q75LR2	AROF_ORYSJ	2, ., 5, ., 1, ., 5, 4	0.7764	0.9058	0.8682	no	no
P37822	AROG_SOLTU	2, ., 5, ., 1, ., 5, 4	0.8106	0.9284	0.9647	N/A	no
P37216	AROG_SOLLC	2, ., 5, ., 1, ., 5, 4	0.7771	0.9736	0.9556	N/A	no
Q00218	AROG_ARATH	2, ., 5, ., 1, ., 5, 4	0.7599	0.9453	0.9901	no	no
P37215	AROF_SOLLC	2, ., 5, ., 1, ., 5, 4	0.8047	0.9284	0.9647	N/A	no
O53512	AROG_MYCTU	2, ., 5, ., 1, ., 5, 4	0.4751	0.8154	0.9372	yes	no
P21357	AROF_SOLTU	2, ., 5, ., 1, ., 5, 4	0.7753	0.9736	0.9609	N/A	no
A0R033	AROG_MYCS2	2, ., 5, ., 1, ., 5, 4	0.4719	0.8135	0.9310	yes	no
Q75W16	AROG_ORYSJ	2, ., 5, ., 1, ., 5, 4	0.8208	0.8794	0.8664	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.54	0.979
3rd Layer	2.5.1	0.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	DHS4	SubName- Full=Putative uncharacterized protein; (531 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	DHQS6	SubName- Full=Putative uncharacterized protein; (375 aa)	•	0.912
	gw1.462.6.1	annotation not avaliable (183 aa)	•	0.800
	fgenesh4_pm.C_LG_X000906	transketolase (EC-2.2.1.1) (656 aa)	•	0.800
	eugene3.00180798	RecName- Full=Fructose-bisphosphate aldolase; EC=4.1.2.13; (358 aa)	•	0.800
	eugene3.00021349	SubName- Full=Putative uncharacterized protein; (745 aa)	•	0.800
	estExt_fgenesh4_pm.C_LG_VIII0532	fructose-bisphosphate aldolase (EC-4.1.2.13) (392 aa)	•	0.800
	estExt_fgenesh4_pm.C_LG_IX0211	RecName- Full=Fructose-bisphosphate aldolase; EC=4.1.2.13; (397 aa)	•	0.800
	estExt_fgenesh4_pm.C_1210019	RecName- Full=Fructose-bisphosphate aldolase; EC=4.1.2.13; (358 aa)	•	0.800
	estExt_fgenesh4_pg.C_LG_X1062	RecName- Full=Fructose-bisphosphate aldolase; EC=4.1.2.13; (392 aa)	•	0.800
	estExt_Genewise1_v1.C_LG_XIV0740	transketolase (EC-2.2.1.1) (635 aa)	•	0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		531
PLN02291		474	PLN02291, PLN02291, phospho-2-dehydro-3-deoxyhepto	0.0
pfam01474		437	pfam01474, DAHP_synth_2, Class-II DAHP synthetase	0.0
TIGR01358		443	TIGR01358, DAHP_synth_II, 3-deoxy-7-phosphoheptulo	0.0
COG3200		445	COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-p	0.0

>gnl\|CDD\|177928 PLN02291, PLN02291, phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

 Score = 1038 bits (2687), Expect = 0.0
 Identities = 408/481 (84%), Positives = 435/481 (90%), Gaps = 7/481 (1%)

Query: 51  VHAAQPAKNSAAVKESSSSPAKASGKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFP 110
           VHAA+P+K          S A    KW+ + W++KKALQLPEYPD+A+LE VLKTLE FP
Sbjct: 1   VHAAEPSKTPV-------SSAGGPKKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFP 53

Query: 111 PLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFG 170
           PLVFAGEARSLEERLAEAAMG AFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFG
Sbjct: 54  PLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFG 113

Query: 171 GQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAY 230
           GQMP++KVGRMAGQFAKPRSDPFE K+GVKLPSY+GDNINGDAFDEKSR PDP+R++RAY
Sbjct: 114 GQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAY 173

Query: 231 CQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGL 290
            QSAATLNLLR+FATGGYAAMQRVTQWNLDF EHSEQGDRY+ELAHRVDEALGFMAA GL
Sbjct: 174 SQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGL 233

Query: 291 TLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVE 350
           T DHP MT+TEFWTSHECLLLPYEQALTR DSTSG YYDCSAHMLWVGERTRQLDGAHVE
Sbjct: 234 TTDHPIMTTTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVE 293

Query: 351 FLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAV 410
           FLRG+ANPLGIKVSDKMDP ELVKL+EI NP NK GR+TII RMGAE +RVKLPHLIRAV
Sbjct: 294 FLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRMGAEKLRVKLPHLIRAV 353

Query: 411 RREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTG 470
           RR GQIVTWV DPMHGNTIKAP GLKTRPFDAI AEVRAFFDVHEQEGSHPGG+HLEMTG
Sbjct: 354 RRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTG 413

Query: 471 QNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRLGTQRLHSLG 530
           QNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK+R+ +    +L 
Sbjct: 414 QNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIRSGANTALA 473

Query: 531 L 531
            
Sbjct: 474 S 474

Length = 474

>gnl\|CDD\|216520 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	Back alignment and domain information

>gnl\|CDD\|130425 TIGR01358, DAHP_synth_II, 3-deoxy-7-phosphoheptulonate synthase, class II	Back alignment and domain information

>gnl\|CDD\|225741 COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		531
PLN02291		474	phospho-2-dehydro-3-deoxyheptonate aldolase	100.0
TIGR01358		443	DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthas	100.0
PF01474		439	DAHP_synth_2: Class-II DAHP synthetase family; Int	100.0
COG3200		445	AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (	100.0
PRK09261		349	phospho-2-dehydro-3-deoxyheptonate aldolase; Valid	97.82
PRK12755		353	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	97.78
TIGR00034		344	aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase	96.06
PRK12756		348	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	94.69
PRK12822		356	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	93.99
PF00793		270	DAHP_synth_1: DAHP synthetase I family; InterPro:	93.38
PLN03033		290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	91.55
PRK13398		266	3-deoxy-7-phosphoheptulonate synthase; Provisional	91.26
KOG2599		308	consensus Pyridoxal/pyridoxine/pyridoxamine kinase	89.41
TIGR01362		258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	87.5
PRK13396		352	3-deoxy-7-phosphoheptulonate synthase; Provisional	87.23
PRK08673		335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	85.05
COG2240		281	PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe	84.86
PRK05756		286	pyridoxamine kinase; Validated	84.13
PRK05198		264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	83.58
TIGR00687		286	pyridox_kin pyridoxal kinase. ThiD and related pro	83.22
PF10096		243	DUF2334: Uncharacterized protein conserved in bact	81.32
cd02803		327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	80.65
COG0722		351	AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (	80.27

>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

Probab=100.00  E-value=3.2e-211  Score=1627.53  Aligned_cols=449  Identities=89%  Similarity=1.397  Sum_probs=443.1

Q ss_pred             CCCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHH
Q 009610           75 GKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIR  154 (531)
Q Consensus        75 ~~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~  154 (531)
                      ..|+|+|||++|++|||.|||+++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus        18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir   97 (474)
T PLN02291         18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR   97 (474)
T ss_pred             CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence            44999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHH
Q 009610          155 DTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSA  234 (531)
Q Consensus       155 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Sa  234 (531)
                      +|+++|+|||.+|+|++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus        98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa  177 (474)
T PLN02291         98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA  177 (474)
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccc
Q 009610          235 ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYE  314 (531)
Q Consensus       235 aTLn~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE  314 (531)
                      +|||+||||..||||||++++.||++|+++++.+++|++++++|++||+||++||++.+...+++++||||||||||+||
T Consensus       178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE  257 (474)
T PLN02291        178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE  257 (474)
T ss_pred             HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999988657889999999999999999


Q ss_pred             cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009610          315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM  394 (531)
Q Consensus       315 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm  394 (531)
                      +||||.|+.+|.|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||
T Consensus       258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~Rm  337 (474)
T PLN02291        258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRM  337 (474)
T ss_pred             hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009610          395 GAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVT  474 (531)
Q Consensus       395 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VT  474 (531)
                      ||+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+|||||||||||||||
T Consensus       338 Ga~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~~ff~vh~~~Gt~~GGlHLElTG~dVT  417 (474)
T PLN02291        338 GAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVT  417 (474)
T ss_pred             chHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHHhhccc
Q 009610          475 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRLGT  523 (531)
Q Consensus       475 ECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~iA~~l~~~~~~~  523 (531)
                      ||+||+..++|+||.+||+|+||||||++|||||||+||++|+++|...
T Consensus       418 EC~Gg~~~i~e~dL~~rY~T~CDPRLN~~QsLelaf~va~~l~~~~~~~  466 (474)
T PLN02291        418 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIRS  466 (474)
T ss_pred             eeCCCccccCcchhhhccccCCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999998877654

>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II	Back alignment and domain information

>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2	Back alignment and domain information

>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	Back alignment and domain information

>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate	Back alignment and domain information

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]	Back alignment and domain information

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase	Back alignment and domain information

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed	Back alignment and domain information

>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]	Back alignment and domain information

>PRK05756 pyridoxamine kinase; Validated	Back alignment and domain information

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>TIGR00687 pyridox_kin pyridoxal kinase	Back alignment and domain information

>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function	Back alignment and domain information

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain	Back alignment and domain information

>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		531
3kgf_A		464	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		1e-114
2w19_A		472	Non-Covalent Complex Between Dahp Synthase And Chor		1e-114
3rzi_A		462	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		1e-114
2b7o_A		464	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		1e-105

>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Complexed With Phenylalanine And Tryptophan Length = 464

Back alignment and structure

Iteration: 1

Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/442 (46%), Positives = 276/442 (62%), Gaps = 9/442 (2%) Query: 79 LEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGXXXXXXXXXXXXXMGNAFLLQG 138 L+ K A Q P +P L + LE PP+ G AFLLQG Sbjct: 28 LDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 86 Query: 139 GDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNG 198 GDCAE+F + +IR R LLQM VVL +G MP++KV R+AGQ+AKPRS + Sbjct: 87 GDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADI---DA 143 Query: 199 VKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWN 258 + L SY+GD ING A D +R DP RL+RAY ++A +NL+R+ + G A++ V WN Sbjct: 144 LGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWN 203 Query: 259 LDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT 318 +F S G RY+ LA +D L FM+A G+ + + + E + SHE L+L YE+A+ Sbjct: 204 REFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLDYERAML 261 Query: 319 RR---DSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKL 375 R D Q +D SAH +W+GERTRQ+DGAH+ F + IANP+G+K+ M P V+ Sbjct: 262 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEY 321 Query: 376 VEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGL 435 VE +PHNK GR+T++ RMG +R LP ++ V+ G V W CDPMHGNT ++ G Sbjct: 322 VERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGF 381 Query: 436 KTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTH 495 KTR FD I+ EV+ FF+VH G+HPGGIH+E+TG+NVTEC+GG++ ++ DL+ RY T Sbjct: 382 KTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDISETDLAGRYETA 441 Query: 496 CDPRLNASQSLELAFIIAERLR 517 CDPRLN QSLELAF++AE LR Sbjct: 442 CDPRLNTQQSLELAFLVAEMLR 463

PyMOL of 3kgf

>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate Mutase From Mycobacterium Tuberculosis Length = 472

Back alignment and structure

>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Cocrystallized And Complexed With Phenylalanine And Tryptophan Length = 462

Back alignment and structure

>pdb|2B7O|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Length = 464

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		531
3rzi_A		462	Probable 3-deoxy-D-arabino-heptulosonate 7-phosph	0.0

>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A* Length = 462	Back alignment and structure

 Score =  580 bits (1496), Expect = 0.0
 Identities = 212/455 (46%), Positives = 288/455 (63%), Gaps = 9/455 (1%)

Query: 66  SSSSPAKASGKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERL 125
            S  P     +  L+    K A Q P +P    L  +   LE  PP+    E   L+E+L
Sbjct: 13  PSLPPLPTDLRTRLDAALAKPAAQQPTWPADQALA-MRTVLESVPPVTVPSEIVRLQEQL 71

Query: 126 AEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQF 185
           A+ A G AFLLQGGDCAE+F +    +IR   R LLQM VVL +G  MP++KV R+AGQ+
Sbjct: 72  AQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQY 131

Query: 186 AKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFAT 245
           AKPRS      + + L SY+GD ING A D  +R  DP RL+RAY  ++A +NL+R+  +
Sbjct: 132 AKPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTS 188

Query: 246 GGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTS 305
            G A++  V  WN +F   S  G RY+ LA  +D  L FM+A G+   +  + + E + S
Sbjct: 189 SGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYAS 246

Query: 306 HECLLLPYEQALTR---RDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIK 362
           HE L+L YE+A+ R    D    Q +D SAH +W+GERTRQ+DGAH+ F + IANP+G+K
Sbjct: 247 HEALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVK 306

Query: 363 VSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCD 422
           +   M P   V+ VE  +PHNK GR+T++ RMG   +R  LP ++  V+  G  V W CD
Sbjct: 307 LGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCD 366

Query: 423 PMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRT 482
           PMHGNT ++  G KTR FD I+ EV+ FF+VH   G+HPGGIH+E+TG+NVTEC+GG++ 
Sbjct: 367 PMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQD 426

Query: 483 VTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 517
           ++  DL+ RY T CDPRLN  QSLELAF++AE LR
Sbjct: 427 ISETDLAGRYETACDPRLNTQQSLELAFLVAEMLR 461

PyMOL of 3rzi

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		531
3rzi_A		462	Probable 3-deoxy-D-arabino-heptulosonate 7-phosph	100.0
1n8f_A		350	DAHP synthetase; (beta/alpha)8 barrel, metal bindi	98.05
3tqk_A		346	Phospho-2-dehydro-3-deoxyheptonate aldolase; trans	97.93
1of8_A		370	Phospho-2-dehydro-3-deoxyheptonate aldolase, tyros	97.74
3nvt_A		385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	88.5
2nwr_A		267	2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD	82.71

>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*	Back alignment and structure

Probab=100.00  E-value=2e-208  Score=1601.35  Aligned_cols=434  Identities=48%  Similarity=0.855  Sum_probs=427.1

Q ss_pred             CcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHHHHHH
Q 009610           79 LEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFR  158 (531)
Q Consensus        79 p~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~~k~~  158 (531)
                      ++|||++|++|||.|| +++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|++|++++|++|++
T Consensus        26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~  104 (462)
T 3rzi_A           26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR  104 (462)
T ss_dssp             HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred             ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence            4799999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 009610          159 VLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLN  238 (531)
Q Consensus       159 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~SaaTLn  238 (531)
                      +|+|||.||+|++++|||||||||||||||||+++|   |++||||||||||+.+||+++|+|||+|||+||++|++|||
T Consensus       105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN  181 (462)
T 3rzi_A          105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN  181 (462)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999   99999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc
Q 009610          239 LLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT  318 (531)
Q Consensus       239 ~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt  318 (531)
                      +||||++||||||+++++||++|+++++.+++|++++++|++||+||++||++.+  .+.+++||||||||||+||+|||
T Consensus       182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt  259 (462)
T 3rzi_A          182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML  259 (462)
T ss_dssp             HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred             HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence            9999999999999999999999999999999999999999999999999999987  67899999999999999999999


Q ss_pred             ccc---CCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009610          319 RRD---STSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMG  395 (531)
Q Consensus       319 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmG  395 (531)
                      |.|   +.+|.||+||||||||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+|||
T Consensus       260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~epGRlTLI~RmG  339 (462)
T 3rzi_A          260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMG  339 (462)
T ss_dssp             EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECCC
T ss_pred             cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCCCCCeEEEEEccC
Confidence            999   88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccc
Q 009610          396 AENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTE  475 (531)
Q Consensus       396 a~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTE  475 (531)
                      |+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+||||||||||||||||
T Consensus       340 a~kv~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~~~~G~KTR~fd~Il~Ev~~ff~vh~~~Gt~~GGvHlE~TG~dVTE  419 (462)
T 3rzi_A          340 NHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTE  419 (462)
T ss_dssp             TTTHHHHHHHHHHHHHHTSCCCEEEECCSTTSEEECTTSCEEEBHHHHHHHHHHHHHHHHHHTCCCCEEEEEBCSSCCCC
T ss_pred             CchhhhhHHHHHHHHHHCCCCeEEEeCCCCCCceeCCCCCccCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHH
Q 009610          476 CIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK  518 (531)
Q Consensus       476 CvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~iA~~l~~  518 (531)
                      |+||+..++|+||..||+|+||||||++|||||||+||++|+.
T Consensus       420 C~GG~~~i~e~dL~~rY~T~CDPRLN~~QsLelAflvAe~l~~  462 (462)
T 3rzi_A          420 CLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLRD  462 (462)
T ss_dssp             SBBTTTTBCTTGGGTTCCCSSSCCBCHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCcccChhhhhhcccccCCcccCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999973

PyMOL of 3rzi

>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*	Back alignment and structure

>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}	Back alignment and structure

>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*	Back alignment and structure

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*	Back alignment and structure

>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		531
d2b7oa1		462	c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,	0.0

>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} Length = 462	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class-II DAHP synthetase
domain: Probable DAHP synthetase AroG, phenylalanine-repressible
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  676 bits (1746), Expect = 0.0
 Identities = 212/454 (46%), Positives = 287/454 (63%), Gaps = 9/454 (1%)

Query: 67  SSSPAKASGKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLA 126
           S  P     +  L+    K A Q P +P    L  +   LE  PP+    E   L+E+LA
Sbjct: 14  SLPPLPTDLRTRLDAALAKPAAQQPTWPADQALA-MRTVLESVPPVTVPSEIVRLQEQLA 72

Query: 127 EAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFA 186
           + A G AFLLQGGDCAE+F +    +IR   R LLQM VVL +G  MP++KV R+AGQ+A
Sbjct: 73  QVAKGEAFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYA 132

Query: 187 KPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATG 246
           KPRS      + + L SY+GD ING A D  +R  DP RL+RAY  ++A +NL+R+  + 
Sbjct: 133 KPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSS 189

Query: 247 GYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSH 306
           G A++  V  WN +F   S  G RY+ LA  +D  L FM+A G+      + + E + SH
Sbjct: 190 GLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGV--ADRNLQTAEIYASH 247

Query: 307 ECLLLPYEQALTR---RDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKV 363
           E L+L YE+A+ R    D    Q +D SAH +W+GERTRQ+DGAH+ F + IANP+G+K+
Sbjct: 248 EALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKL 307

Query: 364 SDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDP 423
              M P   V+ VE  +PHNK GR+T++ RMG   +R  LP ++  V+  G  V W CDP
Sbjct: 308 GPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDP 367

Query: 424 MHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTV 483
           MHGNT ++  G KTR FD I+ EV+ FF+VH   G+HPGGIH+E+TG+NVTEC+GG++ +
Sbjct: 368 MHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDI 427

Query: 484 TFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 517
           +  DL+ RY T CDPRLN  QSLELAF++AE LR
Sbjct: 428 SETDLAGRYETACDPRLNTQQSLELAFLVAEMLR 461

PyMOL of d2b7oa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		531
d2b7oa1		462	Probable DAHP synthetase AroG, phenylalanine-repre	100.0
d2a21a1		263	3-deoxy-D-manno-octulosonate 8-phosphate synthase	91.57
d1n8fa_		343	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	80.68

>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class-II DAHP synthetase
domain: Probable DAHP synthetase AroG, phenylalanine-repressible
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.9e-205  Score=1580.15  Aligned_cols=436  Identities=48%  Similarity=0.856  Sum_probs=415.1

Q ss_pred             CCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHHHH
Q 009610           77 WALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDT  156 (531)
Q Consensus        77 Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~~k  156 (531)
                      |..++|+++||+|||.|||+.+| +|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus        24 ~~~~~~~~~Pa~QqP~ypd~~~l-~v~~~L~~~PPLV~a~Ei~~Lk~~La~va~G~AFlLQgGDCAEsF~~~~~~~Ir~k  102 (462)
T d2b7oa1          24 TRLDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGN  102 (462)
T ss_dssp             HHHHHHHTSCCTTCCCCCHHHHH-HHHHHHTSSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCSHHHHHHH
T ss_pred             hhhhhhhcCccccCCCCCCHHHH-HHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccccChhhcChHHHHHH
Confidence            78899999999999999999988 59999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 009610          157 FRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAAT  236 (531)
Q Consensus       157 ~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~SaaT  236 (531)
                      +++|+|||.||++++++|||||||||||||||||+++   ||++||||||||||+.+||+++|+|||+|||+||++|++|
T Consensus       103 ~k~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRS~~~---dgv~LpsYRGDiVN~~~f~~~aR~PDP~Rll~aY~~Saat  179 (462)
T d2b7oa1         103 VRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAA  179 (462)
T ss_dssp             HHHHHHHHHHHHHHHTSCEEEEEECSSCCCCCCSCSB---CTTSSBCCCCTTTSCSSSSHHHHSCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCCEEEeccchhcccCCccCcc---cccccccccCCcccCCCCChhccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999986   6889999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccc
Q 009610          237 LNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQA  316 (531)
Q Consensus       237 Ln~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~a  316 (531)
                      ||+||||++||||||++++.||++|+++++.+++|++++++|+++|+||++||++..  .+.+++||||||||||+||+|
T Consensus       180 LNllRa~~~gg~AdL~~v~~Wn~~f~~~s~~~~~y~~la~~I~~al~Fm~a~G~~~~--~l~~~~fyTSHEaLlL~YE~A  257 (462)
T d2b7oa1         180 MNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERA  257 (462)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHHTTCCGG--GTCCCCEEEEEECCCHHHHHH
T ss_pred             HHHHHHhhccCccchhhhhhcccccccCCchhHHHHHHHHHHHHHhhhHhhcCCCcc--cccccccccchHhhccchhhh
Confidence            999999999999999999999999999999999999999999999999999999865  678999999999999999999


Q ss_pred             cccc---cCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 009610          317 LTRR---DSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR  393 (531)
Q Consensus       317 ltR~---d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R  393 (531)
                      |||.   |+.+++|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+|
T Consensus       258 ltR~~~~d~~~~~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGiKvGP~~~pd~l~~L~~~LNP~nepGRltLI~R  337 (462)
T d2b7oa1         258 MLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSR  337 (462)
T ss_dssp             TEEECCSSSSSCCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEEC
T ss_pred             heecccccCCCCceeccccceeeecccccccccchhHHHHhccCcceeeeCCCCCHHHHHHHHHHhCcccccceEEEEeh
Confidence            9996   5667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCc
Q 009610          394 MGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNV  473 (531)
Q Consensus       394 mGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~V  473 (531)
                      |||+||++.||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+|||||||||||+||
T Consensus       338 mGa~ki~~~LP~LI~aV~~~g~~VvW~cDPMHGNT~~s~~G~KTR~f~~Il~Ev~~ff~vh~~~gt~~GGvHlE~TG~dV  417 (462)
T d2b7oa1         338 MGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENV  417 (462)
T ss_dssp             CCTTTHHHHHHHHHHHHHTTTCCCEEEECCSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHHHTCCCCEEEEEBCSSCC
T ss_pred             hchHHHHHHHHHHHHHHHhcCCceEEEecCCcCCceeCCCCcccCCHHHHHHHHHHHHHHHHHcCCccCeEEEEecCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHH
Q 009610          474 TECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK  518 (531)
Q Consensus       474 TECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~iA~~l~~  518 (531)
                      |||+||++.++|+||..||+|+||||||++|||||||+||++|++
T Consensus       418 TEC~Gg~~~i~e~dL~~rY~T~CDPRLN~~QslelAf~ia~~l~~  462 (462)
T d2b7oa1         418 TECLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLRD  462 (462)
T ss_dssp             C-------------CCTTCCCSSSCCBCHHHHHHHHHHHHHHHHC
T ss_pred             ceeCCCcccCChhhhhhccccCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999984

PyMOL of d2b7oa1

>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]}	Back information, alignment and structure