Citrus Sinensis ID: 009617
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | 2.2.26 [Sep-21-2011] | |||||||
| Q56ZZ7 | 546 | Plastidic glucose transpo | yes | no | 0.986 | 0.959 | 0.775 | 0.0 | |
| Q0WVE9 | 524 | Probable plastidic glucos | no | no | 0.836 | 0.847 | 0.417 | 1e-103 | |
| Q9FYG3 | 493 | Probable plastidic glucos | no | no | 0.888 | 0.957 | 0.424 | 1e-96 | |
| Q2V4B9 | 495 | Probable plastidic glucos | no | no | 0.807 | 0.866 | 0.431 | 2e-94 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.800 | 0.929 | 0.351 | 3e-67 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.789 | 0.908 | 0.334 | 3e-61 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.804 | 0.934 | 0.306 | 3e-59 | |
| P47842 | 495 | Solute carrier family 2, | yes | no | 0.789 | 0.846 | 0.326 | 4e-57 | |
| Q0WUU6 | 526 | Probable polyol transport | no | no | 0.841 | 0.849 | 0.339 | 1e-55 | |
| Q8TDB8 | 520 | Solute carrier family 2, | yes | no | 0.817 | 0.834 | 0.323 | 1e-55 |
| >sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/547 (77%), Positives = 462/547 (84%), Gaps = 23/547 (4%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F + R R FA +S+A + S MG
Sbjct: 1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
L RA G++++ S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116
Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176
Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236
Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356
Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTFSFT 401
QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVF GRK+LL SF
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFG 416
Query: 402 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 461
GMA SMLLLSLSFTWK LA YSGTLAV+GTVLYVLSFSLGAGPVPALLLPEIFASRIRAK
Sbjct: 417 GMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 476
Query: 462 AVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 521
AVALSLGMHWISNFVIGLYFLSVV KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLE
Sbjct: 477 AVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLE 536
Query: 522 EIERALN 528
EIE AL
Sbjct: 537 EIELALT 543
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/462 (41%), Positives = 294/462 (63%), Gaps = 18/462 (3%)
Query: 84 DIEEATPFKPQAKKSSGV----VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAEN 139
D E +P P+ K S+ + P V VA + LFGYH+GV+NG + +A++LG N
Sbjct: 58 DDHEISPVPPE-KFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGN 116
Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199
++L+G +VS +AGA +GS G L DKFG RTFQ+ +PL GA + A A S+ ++
Sbjct: 117 SILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILC 176
Query: 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259
GR L G+GIG+++ +VP+YISE++PT+ RG+LG++ Q+ C+GI+ +L+ G+P +P W
Sbjct: 177 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHW 236
Query: 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319
WRTM +A++P LLALGM + ESPRWL + G+ +A+ I+ ++G V + + D +
Sbjct: 237 WRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQS 296
Query: 320 AGQGS-AEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV 378
+ S + + W +L + +V +G +LF+ QQ AGIN V+Y+S+ F++VGI S
Sbjct: 297 VMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGA 356
Query: 379 AASALVGAANVF------------GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTL 426
AS VG N GRK LL S+ GMA SM L+ + + + S +L
Sbjct: 357 QASLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSL 416
Query: 427 AVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486
++LGT++Y+ SF++GAGPV L++PE+ ++R R K + S +HW+SNF++GL+FL +V
Sbjct: 417 SILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVE 476
Query: 487 KFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALN 528
K+G+ TVY F +V LLA + + VETKGRSLEEIE +LN
Sbjct: 477 KYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLN 518
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 208/490 (42%), Positives = 300/490 (61%), Gaps = 18/490 (3%)
Query: 54 MKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSS-GVVLPFVGVACLG 112
+ L R T + S + + S+G +E + + S LP V VA +
Sbjct: 2 LGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATIS 61
Query: 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR 172
+ LFGYHLGVVN LE ++ DLG + +T+ +G +VS L GA +GS G +AD FGR R
Sbjct: 62 SFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRR 121
Query: 173 TFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALG 232
FQ+ A+P+ GAF+ + S+ M++GR L G G+G+ + LY++E+SP +RG G
Sbjct: 122 AFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYG 181
Query: 233 SVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQG 292
S Q+ C+G++AAL G+P+ WWR F L+ IP+ LLALGM L ESP+WLF+QG
Sbjct: 182 SFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQG 241
Query: 293 KKSEAEKSIQTLYGKERVSEVMLDLTNAG-QGSAEPE-AGWFDLFSSRYWKVVSVGAALF 350
K +EAE + L G V M +L + EP+ +L R+ +VV +G+ LF
Sbjct: 242 KIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTLF 301
Query: 351 LFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTF 398
QQL+GINAV Y+S++VF+S G+ SD+ + VG +N+ GRK LL +
Sbjct: 302 ALQQLSGINAVFYFSSTVFKSAGVPSDL-GNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360
Query: 399 SFTGMAASMLLLSLSFTWKVLAPYSG-TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR 457
SF GMAA+M L + T L +S L+V GT+++VL+F+LGAGPVP LLLPEIF SR
Sbjct: 361 SFIGMAAAM-ALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSR 419
Query: 458 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKG 517
IRAKA+A + +HW+ NF +GL FL ++ K G +Y F+T CL+AV+++ NV+ETKG
Sbjct: 420 IRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKG 479
Query: 518 RSLEEIERAL 527
++L+EIE +L
Sbjct: 480 KTLQEIEISL 489
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/450 (43%), Positives = 286/450 (63%), Gaps = 21/450 (4%)
Query: 92 KPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLL 151
P K+S LP V VA L ++LFGYHLGVVN LE ++ DLG + NT+ +G +VS+ L
Sbjct: 48 NPSWKRS----LPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCL 103
Query: 152 AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGIS 211
GA +GS G +AD GR R FQL A+P+ GA + A+ +S+ M++GR L GIG+GI
Sbjct: 104 GGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIG 163
Query: 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271
++ LY++E+SP +RG GS Q+ C+G+L +L AG+P N WWR F ++ +P+
Sbjct: 164 PSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPA 223
Query: 272 ILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW 331
+LA+ M L ESP+WLF++G+ +EAE + L G V M +L + +G A
Sbjct: 224 AMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKL 283
Query: 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANV-- 389
+L R ++VV +G+ LF QQL+GINAV Y+S++VF+ G+ S +A+ VG N+
Sbjct: 284 SELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPS-ASANICVGVCNLLG 342
Query: 390 ----------FGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGT--LAVLGTVLYVLS 437
GRK LL SF GMA S+ L ++++T + +P+ GT L+V G +L+VLS
Sbjct: 343 STVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAYT-SLPSPF-GTLFLSVGGMLLFVLS 400
Query: 438 FSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGF 497
F+ GAGPVP+LLL EI R+RA A+A+ L +HW+ NF +GL FL ++ + G + F
Sbjct: 401 FATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIF 460
Query: 498 ATVCLLAVLYIAVNVVETKGRSLEEIERAL 527
C++AV+++ NVVETKG+SL+EIE +L
Sbjct: 461 GFFCVVAVIFVQKNVVETKGKSLQEIEISL 490
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 246/447 (55%), Gaps = 22/447 (4%)
Query: 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
KK S + L F G LG L+GY GV++GA+ ++ K+LG+ N +G +VSSLL GA
Sbjct: 2 KKQSNIWLYFFG--ALGGALYGYDTGVISGAILFMKKELGL--NAFTEGLVVSSLLVGAI 57
Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
+GS G L D+FGR + A+ G A A + M++ R++ G+ +G S+ IV
Sbjct: 58 LGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIV 117
Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275
PLY+SE++P RGAL S+NQL I VGIL + + A + WR M GLAA+PS+LL
Sbjct: 118 PLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFA-DAEAWRWMLGLAAVPSLLLL 176
Query: 276 LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335
+G+ PESPRWLF G++S+A+K ++ L G + + + + D+ A + E G +LF
Sbjct: 177 IGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKEA---EKQDEGGLKELF 233
Query: 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGI--ESDVAASALVGAANVF--- 390
+ G L QQ G N ++YY+ F +VG + + + +G NV
Sbjct: 234 DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTL 293
Query: 391 ---------GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLG 441
GRK LL F GM S+++L+L + P + V+ ++++ F++
Sbjct: 294 VAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVS 353
Query: 442 AGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 501
GPV ++LPE+F +R +S M + ++ L + ++ GIS ++L +A +
Sbjct: 354 WGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIG 413
Query: 502 LLAVLYIAVNVVETKGRSLEEIERALN 528
++A L++ V ETKGRSLEEIE+ L
Sbjct: 414 IMAFLFVRFKVTETKGRSLEEIEQDLR 440
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 151/452 (33%), Positives = 254/452 (56%), Gaps = 33/452 (7%)
Query: 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
K + ++ F G LG +L+GY GV++GAL ++ D I T+ +G +VS LL GA
Sbjct: 3 KDTRKYMIYFFG--ALGGLLYGYDTGVISGALLFINND--IPLTTLTEGLVVSMLLLGAI 58
Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
GS G+ +D++GR + + ++ GA CA +Q++ +I RV+ G+ +G S+A+V
Sbjct: 59 FGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALV 118
Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGL---PLAGNPLWWRTMFGLAAIPSI 272
P+Y+SE++PT+IRG LG++N L I GIL A + P WR M GLAA+P++
Sbjct: 119 PVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA----WRWMVGLAAVPAV 174
Query: 273 LLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWF 332
LL +G+ PESPRWL ++G + EA + + + + ++ ++L QG AE +
Sbjct: 175 LLLIGIAFMPESPRWLVKRGSEEEARRIMNITHDPK---DIEMELAEMKQGEAEKKETTL 231
Query: 333 DLFSSRYWK-VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASAL----VGAA 387
+ +++ + ++ +G L +FQQ GIN V+YY+ ++F G+ + +ASAL +G
Sbjct: 232 GVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGT--SASALGTMGIGIL 289
Query: 388 NVF------------GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 435
NV GRK LL + G+ S+ LS L+ + + V+ +Y+
Sbjct: 290 NVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTVVFLGVYI 349
Query: 436 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYL 495
+ + GPV +L+PE+F S+ R A + + +N ++ L F +++ GI+ V++
Sbjct: 350 VFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFM 409
Query: 496 GFATVCLLAVLYIAVNVVETKGRSLEEIERAL 527
F+ +CLL+ + V ETKG+SLEEIE +L
Sbjct: 410 VFSVICLLSFFFAFYMVPETKGKSLEEIEASL 441
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 137/447 (30%), Positives = 240/447 (53%), Gaps = 20/447 (4%)
Query: 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
K S+G V F LG +LFGY GV++GA+ ++ K + + QGW+VS++L GA
Sbjct: 3 KVSTGFVYFF---GALGGLLFGYDTGVISGAILFIQKQMNLGSWQ--QGWVVSAVLLGAI 57
Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
+G+ G +D+FGR + L A+ GA A + T+II R++ G+ +G +SA++
Sbjct: 58 LGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALI 117
Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275
P Y++E++P++ RG + S+ QL + GIL A + +G WR M G AAIP+ LL
Sbjct: 118 PTYLAELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLF 177
Query: 276 LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335
LG + PESPR+L + G EA + T+ ++V+ V ++ + + + GW +LF
Sbjct: 178 LGGLILPESPRFLVKSGHLDEARHVLDTMNKHDQVA-VNKEINDIQESAKIVSGGWSELF 236
Query: 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAA-------- 387
+ +G L +FQQ+ G N V+YY+ ++F VG A A +G
Sbjct: 237 GKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSAALLAHIGIGIFNVIVTA 296
Query: 388 ------NVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLG 441
+ RK ++ GM S+ ++S+ + + + ++V+ +Y+ FS
Sbjct: 297 IAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAIISVIALTVYIAFFSAT 356
Query: 442 AGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 501
GPV +++ E+F IR + + ++W +N ++ L F S+++ FG ++++G+ +C
Sbjct: 357 WGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDFFGTGSLFIGYGILC 416
Query: 502 LLAVLYIAVNVVETKGRSLEEIERALN 528
++ ++ V ET+ RSLE+IE L
Sbjct: 417 FASIWFVQKKVFETRNRSLEDIEATLR 443
|
Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|P47842|GTR3_CANFA Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 242/453 (53%), Gaps = 34/453 (7%)
Query: 108 VACLGAILFGYHLGVVNGALEYLAKDL------GIAEN-------TVLQGWIVSSLLAGA 154
+A +G+ FGY+ GV+N A E + KD +EN T L V+ G
Sbjct: 16 IATIGSFQFGYNTGVIN-APETIIKDFLNYTLEEKSENLPTEVLLTSLWSLSVAIFSVGG 74
Query: 155 TVGSFTGGSLADKFGRTRT-FQLDAVPLAAGAFL--CATAQSVQTMIIGRVLAGIGIGIS 211
+GSF+ G ++FGR + ++ + +A G + C AQSV+ +I+GR++ G+ G+
Sbjct: 75 MIGSFSVGLFVNRFGRRNSMLMVNLLAVAGGCLMGFCKIAQSVEMLILGRLIIGLFCGLC 134
Query: 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP-LAGNPLWWRTMFGLAAIP 270
+ VP+YI EISPT +RGA G++NQL I +GIL A + GL + G W + G IP
Sbjct: 135 TGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQIFGLKVIMGTEELWPLLLGFTIIP 194
Query: 271 SILLALGMGLSPESPRWLFQQGKKSEAEKSI-QTLYGKERVSEVMLDLTN-AGQGSAEPE 328
++L + + PESPR+L K+ E K I Q L+G + VS+ + ++ + + + + E +
Sbjct: 195 AVLQSAALPFCPESPRFLLINRKEEENAKEILQRLWGTQDVSQDIQEMKDESARMAQEKQ 254
Query: 329 AGWFDLFSSR-YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAA 387
+LF SR Y + + + L L QQL+GINAV YYST +F+ G+E + A+ G
Sbjct: 255 VTVLELFRSRSYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGVEEPIYATIGAGVV 314
Query: 388 NVF------------GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 435
N GR+ L GMA +L+++S K + + + +++V
Sbjct: 315 NTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSILMTISLLLKDNYNWMSFVCIGAILVFV 374
Query: 436 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYL 495
F +G GP+P ++ E+F+ R A+A++ +W SNF++GL F S G + V++
Sbjct: 375 AFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAFYLG-AYVFI 433
Query: 496 GFATVCLLAVLYIAVNVVETKGRSLEEIERALN 528
F ++ +++ V ET+GR+ EEI RA
Sbjct: 434 IFTGFLIVFLVFTFFKVPETRGRTFEEITRAFE 466
|
Facilitative glucose transporter. Probably a neuronal glucose transporter. Canis familiaris (taxid: 9615) |
| >sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 165/486 (33%), Positives = 250/486 (51%), Gaps = 39/486 (8%)
Query: 70 TVKPRSVKAQASAGDIEEATPFKPQAKKSSGV---VLPFVGVACLGAILFGYHLGVVNGA 126
+V + K Q D EE+ + ++S V+ A L +L GY +GV++GA
Sbjct: 20 SVGNKKNKYQRMDSDAEESQNHREAEARNSRTRKYVMACAFFASLNNVLLGYDVGVMSGA 79
Query: 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186
+ ++ +DL I E V ++ SL + GS GG +D GR T L A+ GA
Sbjct: 80 VLFIQQDLKITE--VQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQTGAA 137
Query: 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAA 246
+ A A S + ++IGR LAGIGIG+ I P+YI+EISPT RG S ++FI +GIL
Sbjct: 138 VMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIFINLGILLG 197
Query: 247 LVAGLPLAGNPLW--WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSI--- 301
V+ +G + WR M + +PS+ + + + PESPRWL +G+ A + +
Sbjct: 198 YVSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRWLVMKGRVDSAREVLMKT 257
Query: 302 --QTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR--YWKVVSVGAALFLFQQLAG 357
+ +ER++E+ L A +E W +L S K++ VG + FQQ+ G
Sbjct: 258 NERDDEAEERLAEI--QLAAAHTEGSEDRPVWRELLSPSPVVRKMLIVGFGIQCFQQITG 315
Query: 358 INAVVYYSTSVFRSVGIESD---VAASALVGAAN-VF-----------GRKNLLTFSFTG 402
I+A VYYS + + GI+ + +AA+ VG VF GRK LL S G
Sbjct: 316 IDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVFILFATFLIDSVGRKPLLYVSTIG 375
Query: 403 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLS----FSLGAGPVPALLLPEIFASRI 458
M ++ L LSFT L GTL + +L+V FS+G GPV +L EIF R+
Sbjct: 376 M--TLCLFCLSFTLTFLG--QGTLGITLALLFVCGNVAFFSIGMGPVCWVLTSEIFPLRL 431
Query: 459 RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 518
RA+A AL + + + ++ + FLSV + + F+ V L+V+++ V V ET G+
Sbjct: 432 RAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSLVSALSVIFVYVLVPETSGK 491
Query: 519 SLEEIE 524
SLE+IE
Sbjct: 492 SLEQIE 497
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8TDB8|GTR14_HUMAN Solute carrier family 2, facilitated glucose transporter member 14 OS=Homo sapiens GN=SLC2A14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 245/470 (52%), Gaps = 36/470 (7%)
Query: 92 KPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGA----LEYLAKDLGIAEN-------- 139
KP + ++ + VA +G+ FGY+ GV+N E++ K L N
Sbjct: 24 KPHTLAVTPALIFAITVATIGSFQFGYNTGVINAPETIIKEFINKTLTDKANAPPSEVLL 83
Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQT 196
T L V+ G +GSF+ G ++FGR + + + A G L C A+SV+
Sbjct: 84 TNLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAATGGCLMGLCKIAESVEM 143
Query: 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-G 255
+I+GR++ G+ G+ + VP+YI EISPT +RGA G++NQL I +GIL A + GL L G
Sbjct: 144 LILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQIFGLELILG 203
Query: 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSE-AEKSIQTLYGKERVSEVM 314
+ W + G +P+IL + + PESPR+L KK E A + +Q L+G + VS+ +
Sbjct: 204 SEELWPVLLGFTILPAILQSAALPCCPESPRFLLINRKKEENATRILQRLWGTQDVSQDI 263
Query: 315 LDLTN-AGQGSAEPEAGWFDLFS-SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV 372
++ + + + S E + +LF S Y + + + L L QQL+GINAV YYST +F+
Sbjct: 264 QEMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDA 323
Query: 373 GIESDVAASALVGAANVF------------GRKNLLTFSFTGMAASMLLLSLSFTWKVLA 420
G++ + A+ G N GR+ L GMA L+++S K
Sbjct: 324 GVQQPIYATISAGVVNTIFTLLSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLK--N 381
Query: 421 PYSG-TLAVLGTVL-YVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIG 478
Y+G + +G +L +V F +G GP+P ++ E+F+ R A+A++ +W SNF++G
Sbjct: 382 HYNGMSFVCIGAILVFVACFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVG 441
Query: 479 LYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALN 528
L F S G + V++ F + + + V ET+GR+ E+I RA
Sbjct: 442 LLFPSAAYYLG-AYVFIIFTGFLITFLAFTFFKVPETRGRTFEDITRAFE 490
|
Facilitative glucose transporter (By similarity). May have a specific function related to spermatogenesis. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | ||||||
| 225452080 | 542 | PREDICTED: plastidic glucose transporter | 0.984 | 0.964 | 0.780 | 0.0 | |
| 9858106 | 555 | putative glucose translocator [Mesembrya | 0.988 | 0.945 | 0.755 | 0.0 | |
| 297807643 | 545 | GLT1 [Arabidopsis lyrata subsp. lyrata] | 0.986 | 0.961 | 0.772 | 0.0 | |
| 8347250 | 515 | hexose transporter [Arabidopsis thaliana | 0.932 | 0.961 | 0.804 | 0.0 | |
| 398806194 | 547 | hexose transporter [Camellia sinensis] | 0.990 | 0.961 | 0.775 | 0.0 | |
| 18417892 | 546 | Plastidic glucose transporter 4 [Arabido | 0.986 | 0.959 | 0.775 | 0.0 | |
| 15625046 | 544 | hexose transporter pGlT [Olea europaea] | 0.986 | 0.963 | 0.763 | 0.0 | |
| 222423889 | 546 | AT5G16150 [Arabidopsis thaliana] | 0.986 | 0.959 | 0.773 | 0.0 | |
| 356545878 | 547 | PREDICTED: plastidic glucose transporter | 0.983 | 0.954 | 0.752 | 0.0 | |
| 8347244 | 534 | hexose transporter [Nicotiana tabacum] | 0.903 | 0.898 | 0.803 | 0.0 |
| >gi|225452080|ref|XP_002284052.1| PREDICTED: plastidic glucose transporter 4 [Vitis vinifera] gi|51574116|gb|AAU07980.1| plastid hexose transporter [Vitis vinifera] gi|296087262|emb|CBI33636.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/546 (78%), Positives = 454/546 (83%), Gaps = 23/546 (4%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNS-----ICMRDMGMK 55
MQ STYA K S+ + +NRR F S N T+N + I MG +
Sbjct: 1 MQTSTYAAKGSIGLELQNRRVFPRFGE-FRKQSSCVKNLRVTNNTTSSGLRIGSVVMGAE 59
Query: 56 LTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAIL 115
R +E +FR PRSVKA+AS GDIE+ PQ K SSG VLPFVGVACLGAIL
Sbjct: 60 FGRPRTRIEAVFR----PRSVKARASGGDIEDVDVTAPQGK-SSGTVLPFVGVACLGAIL 114
Query: 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175
FGYHLGVVNGALEYL+KDLGIAEN VLQGW+VS+LLAGAT+GSFTGG+LADKFGRTRTFQ
Sbjct: 115 FGYHLGVVNGALEYLSKDLGIAENAVLQGWVVSTLLAGATLGSFTGGALADKFGRTRTFQ 174
Query: 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235
LDA+PLA GAFLCATAQSVQTMIIGR+LAGIGIGISSA+VPLYISEISPTEIRGALGSVN
Sbjct: 175 LDAIPLAVGAFLCATAQSVQTMIIGRLLAGIGIGISSALVPLYISEISPTEIRGALGSVN 234
Query: 236 QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKS 295
QLFIC+GILAALVAGLPLA NPLWWRTMFG+A +PSILLALGM SPESPRWLFQQGK S
Sbjct: 235 QLFICIGILAALVAGLPLARNPLWWRTMFGVAVVPSILLALGMAFSPESPRWLFQQGKIS 294
Query: 296 EAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 355
EAEKSI+TL GKERV+EVM DL QGS+E EAGWFDLFS RYWKVVSVGAALFLFQQL
Sbjct: 295 EAEKSIKTLNGKERVAEVMNDLREGLQGSSEQEAGWFDLFSGRYWKVVSVGAALFLFQQL 354
Query: 356 AGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTFSFTGM 403
AGINAVVYYSTSVFRS GI SDVAASALVGA+NVF GRK+LL SF GM
Sbjct: 355 AGINAVVYYSTSVFRSAGIASDVAASALVGASNVFGTAIASSLMDRQGRKSLLITSFAGM 414
Query: 404 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 463
AASM+LLS SFTW LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV
Sbjct: 415 AASMMLLSFSFTWSALAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 474
Query: 464 ALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEI 523
ALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGF+ VCLLAVLYIA NVVETKGRSLEEI
Sbjct: 475 ALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFSAVCLLAVLYIAGNVVETKGRSLEEI 534
Query: 524 ERALNP 529
ERALNP
Sbjct: 535 ERALNP 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9858106|gb|AAG00995.1|AF286906_1 putative glucose translocator [Mesembryanthemum crystallinum] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/561 (75%), Positives = 467/561 (83%), Gaps = 36/561 (6%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAG---FANTRSV---------------ALNCNFT 42
MQAS+ +K ++ F+ +NRRR + AG F N+ + + +C T
Sbjct: 1 MQASSCLVKGNLGFEVQNRRRGVLAVAGLGGFKNSSPILSSNLRFVNGVINKKSSSCKLT 60
Query: 43 SNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVV 102
++ S+ M G L R G++ +F+ST K RSVKAQA++GD E+ P K Q K SS V
Sbjct: 61 TSGSVLM---GAGLAR--MGLDHVFQSTAKYRSVKAQAASGDYEDPAPVKFQGK-SSASV 114
Query: 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
LP+VGVACLGAILFGYHLGVVNGALEYL+ DLGIA NTVLQGW+VS LLAGATVGSFTGG
Sbjct: 115 LPYVGVACLGAILFGYHLGVVNGALEYLSPDLGIAGNTVLQGWVVSILLAGATVGSFTGG 174
Query: 163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222
SLADKFGRTRTFQLDA+PLA GA+LCATAQSVQTM+IGR+L GIGIGISSA+VPLYISEI
Sbjct: 175 SLADKFGRTRTFQLDAIPLAIGAYLCATAQSVQTMMIGRLLCGIGIGISSALVPLYISEI 234
Query: 223 SPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282
SPTEIRGALGSVNQLFIC+GILAALVAGLPLAGNPLWWRTMFG+AAIPS+LLALGM + P
Sbjct: 235 SPTEIRGALGSVNQLFICIGILAALVAGLPLAGNPLWWRTMFGIAAIPSVLLALGMAMCP 294
Query: 283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342
ESPRWLFQQGK +EAEK+ LYGKERV EVM DL + QGS+EPEAGWFDLFSSRY KV
Sbjct: 295 ESPRWLFQQGKVAEAEKASAALYGKERVPEVMNDLKASVQGSSEPEAGWFDLFSSRYRKV 354
Query: 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------ 390
VSVGAALFLFQQ+AGINAVVYYSTSVFRS GIESDVAASALVGAANVF
Sbjct: 355 VSVGAALFLFQQMAGINAVVYYSTSVFRSAGIESDVAASALVGAANVFGTAIASSLMDRQ 414
Query: 391 GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLL 450
GRK+LL SF+GMAASMLLLSLSFTW VLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLL
Sbjct: 415 GRKSLLITSFSGMAASMLLLSLSFTWPVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLL 474
Query: 451 PEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 510
PEIFASRIRAKAVALSLGMHW SNFVIGLYFLSVV KFGIS VYLGFA+VC+LAVLYIA
Sbjct: 475 PEIFASRIRAKAVALSLGMHWASNFVIGLYFLSVVTKFGISRVYLGFASVCMLAVLYIAG 534
Query: 511 NVVETKGRSLEEIERALNPVV 531
NVVETKGRSLEEIERAL+P V
Sbjct: 535 NVVETKGRSLEEIERALSPAV 555
|
Source: Mesembryanthemum crystallinum Species: Mesembryanthemum crystallinum Genus: Mesembryanthemum Family: Aizoaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807643|ref|XP_002871705.1| GLT1 [Arabidopsis lyrata subsp. lyrata] gi|297317542|gb|EFH47964.1| GLT1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/546 (77%), Positives = 465/546 (85%), Gaps = 22/546 (4%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F R R A FA+ +S+A + S + MG K
Sbjct: 1 MQSSTYAVKGNAAFAFHRRTLSSNRSATSTGIRFADKKSIATTGPLYCSGS---KAMGAK 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAI 114
L RA G++++ S+VK RSV+AQAS+GD EEA P + + K+S G VLPFVGVACLGAI
Sbjct: 58 LARAENGIQSVMSFSSVKARSVRAQASSGDAEEAIPLRSEGKRS-GTVLPFVGVACLGAI 116
Query: 115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174
LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVS+LLAGATVGSFTGG+LADKFGRTRTF
Sbjct: 117 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSALLAGATVGSFTGGALADKFGRTRTF 176
Query: 175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV 234
QLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGSV
Sbjct: 177 QLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSV 236
Query: 235 NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKK 294
NQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 NQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKV 296
Query: 295 SEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 354
S+AEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQQ
Sbjct: 297 SQAEKAIKTLYGKERVVELVRDLSTSGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 356
Query: 355 LAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTFSFTG 402
LAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVF GRK+LL SF G
Sbjct: 357 LAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGG 416
Query: 403 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 462
MA SMLLLSLSFTWK LA YSGTLAV+GTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA
Sbjct: 417 MALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 476
Query: 463 VALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEE 522
VALSLGMHWISNFVIGLYFLSVV +FGIS+VYLGFA VC+LAVLYIA NVVETKGRSLEE
Sbjct: 477 VALSLGMHWISNFVIGLYFLSVVTRFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEE 536
Query: 523 IERALN 528
IE AL
Sbjct: 537 IELALT 542
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8347250|gb|AAF74569.1|AF215855_1 hexose transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/512 (80%), Positives = 446/512 (87%), Gaps = 17/512 (3%)
Query: 29 FANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFR-STVKPRSVKAQASAGDIEE 87
FA +S+A + S MG L RA G++++ S+VK RSV+AQAS+GD EE
Sbjct: 1 FAGYKSLATTGPLYCSGS---EAMGATLARADNGIQSVMSFSSVKARSVRAQASSGDEEE 57
Query: 88 ATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV 147
A P + + K SSG VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV
Sbjct: 58 AIPLRSEGK-SSGTVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV 116
Query: 148 SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207
SSLLAGATVGSFTGG+LADKFGRTRTFQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIG
Sbjct: 117 SSLLAGATVGSFTGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIG 176
Query: 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267
IGISSAIVPLYISEISPTEIRGALGSVNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A
Sbjct: 177 IGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVA 236
Query: 268 AIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEP 327
IPS+LLA+GM SPESPRWL QQGK SEAEK+I+TLYGKERV E++ DL+ +GQGS+EP
Sbjct: 237 VIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEP 296
Query: 328 EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAA 387
EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS GI+SDVAASALVGA+
Sbjct: 297 EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGAS 356
Query: 388 NV------------FGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 435
NV GRK+LL SF GM SMLLLSLSFTWK LA YSGTLAV+GTVLYV
Sbjct: 357 NVAGTAVASSLMDKMGRKSLLLTSFGGMVHSMLLLSLSFTWKALAAYSGTLAVVGTVLYV 416
Query: 436 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYL 495
LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV KFGIS+VYL
Sbjct: 417 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYL 476
Query: 496 GFATVCLLAVLYIAVNVVETKGRSLEEIERAL 527
GFA VC+LAVLYIA NVVETKGRSLEEIE AL
Sbjct: 477 GFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 508
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|398806194|gb|AFP19448.1| hexose transporter [Camellia sinensis] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/552 (77%), Positives = 466/552 (84%), Gaps = 26/552 (4%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVAL---NCNFTSNNSICMRDMG---- 53
MQA+TYA K S FD + RR GF+ R L N T +S +G
Sbjct: 1 MQAATYASKGSXRFDNQKRR----FLPGFSELRKRGLGFNNLRMTERSSCFGLRLGSVAM 56
Query: 54 -MKLTRATQGVETLFRSTVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACL 111
+L R GV+ +FRS+ K RSV+AQASA GD+E+ P K QAK SSG VLP VGVACL
Sbjct: 57 EAELGRVRTGVDRVFRSSAKARSVRAQASADGDMEDLVPAKIQAK-SSGNVLPXVGVACL 115
Query: 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT 171
GAILFGYHLGVVNGALEYL+KDLGIAENTV+QGWIVS+LLAGATVGSFTGG+LADKFGRT
Sbjct: 116 GAILFGYHLGVVNGALEYLSKDLGIAENTVIQGWIVSTLLAGATVGSFTGGALADKFGRT 175
Query: 172 RTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL 231
+TFQLDA+PLA GAFLC TAQSVQTMIIGR+LAGIGIGISSAIVPLYISEISPTEIRG L
Sbjct: 176 KTFQLDAIPLAVGAFLCTTAQSVQTMIIGRLLAGIGIGISSAIVPLYISEISPTEIRGTL 235
Query: 232 GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQ 291
GSVNQLFIC+GILAALVAGLPLAGNPLWWR+MFG+A IPS+LLALGM SPESPRWL+QQ
Sbjct: 236 GSVNQLFICIGILAALVAGLPLAGNPLWWRSMFGIAMIPSVLLALGMAFSPESPRWLYQQ 295
Query: 292 GKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFL 351
GK S+AE SI+TL+GKE+V+EVM DL+ A QGS+EPEAGWFDLFSSRYWKV SVGAALFL
Sbjct: 296 GKISQAEMSIKTLFGKEKVAEVMNDLSAASQGSSEPEAGWFDLFSSRYWKVDSVGAALFL 355
Query: 352 FQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTFS 399
FQQLAGINAVVYYSTSVFRSVGI SDVAASALVGA+NVF GRK+LL S
Sbjct: 356 FQQLAGINAVVYYSTSVFRSVGIASDVAASALVGASNVFGTTIASSLMDKQGRKSLLMTS 415
Query: 400 FTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR 459
F GMAASMLLLSLS TW VLAPY+G LAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR
Sbjct: 416 FAGMAASMLLLSLSLTWTVLAPYAGILAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR 475
Query: 460 AKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRS 519
AKAVALSLGMHWISNFVIGLYFLSVVNKFGIS+VYLGF+ VCLLAV+YIA NVVETKGRS
Sbjct: 476 AKAVALSLGMHWISNFVIGLYFLSVVNKFGISSVYLGFSMVCLLAVIYIASNVVETKGRS 535
Query: 520 LEEIERALNPVV 531
LEEIERALNP +
Sbjct: 536 LEEIERALNPAI 547
|
Source: Camellia sinensis Species: Camellia sinensis Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18417892|ref|NP_568328.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|30685706|ref|NP_850828.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|42573381|ref|NP_974787.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|117940139|sp|Q56ZZ7.2|PLST4_ARATH RecName: Full=Plastidic glucose transporter 4; Short=AtpGlcT gi|16648753|gb|AAL25568.1| AT5g16150/T21H19_70 [Arabidopsis thaliana] gi|20259506|gb|AAM13873.1| putative sugar transporter [Arabidopsis thaliana] gi|21436467|gb|AAM51434.1| putative sugar transporter [Arabidopsis thaliana] gi|332004870|gb|AED92253.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|332004871|gb|AED92254.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|332004872|gb|AED92255.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/547 (77%), Positives = 462/547 (84%), Gaps = 23/547 (4%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F + R R FA +S+A + S MG
Sbjct: 1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
L RA G++++ S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116
Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176
Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236
Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356
Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTFSFT 401
QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVF GRK+LL SF
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFG 416
Query: 402 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 461
GMA SMLLLSLSFTWK LA YSGTLAV+GTVLYVLSFSLGAGPVPALLLPEIFASRIRAK
Sbjct: 417 GMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 476
Query: 462 AVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 521
AVALSLGMHWISNFVIGLYFLSVV KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLE
Sbjct: 477 AVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLE 536
Query: 522 EIERALN 528
EIE AL
Sbjct: 537 EIELALT 543
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15625046|gb|AAK62031.1| hexose transporter pGlT [Olea europaea] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/545 (76%), Positives = 452/545 (82%), Gaps = 21/545 (3%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRAT 60
MQ ST+A+K ++C +N R N A++ + S C G+ L
Sbjct: 1 MQVSTHAVKGNLCLGLQNLRPLPSSRELRENNLGFAVSELRMTKRSSCF---GIGLDSIA 57
Query: 61 QGV-----ETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAIL 115
G ++++ S K RSV+AQA GD+E+ P K Q K SSG VLP+VGVACLGAIL
Sbjct: 58 MGARGNWPKSVYGSLAKARSVRAQAYEGDVEDVAPAKIQVK-SSGTVLPYVGVACLGAIL 116
Query: 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175
FGYHLGVVNGALEYLAKDLGIAEN VLQGW+VS+LLAGATVGSFTGGSLADKFGRT+TF
Sbjct: 117 FGYHLGVVNGALEYLAKDLGIAENAVLQGWVVSTLLAGATVGSFTGGSLADKFGRTKTFL 176
Query: 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235
LDA+PLA GAFLCATAQ+++TMIIGR+LAGIGIGISSAIVPLYISEISPTEIRG LGSVN
Sbjct: 177 LDAIPLAVGAFLCATAQNIETMIIGRLLAGIGIGISSAIVPLYISEISPTEIRGTLGSVN 236
Query: 236 QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKS 295
QLFIC+GILAALVAGLPLAGNPLWWRTMFG+A IPSILLALGM SPESPRWL+QQGK S
Sbjct: 237 QLFICIGILAALVAGLPLAGNPLWWRTMFGVAIIPSILLALGMAFSPESPRWLYQQGKIS 296
Query: 296 EAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 355
EAE SI+ L GKERV+EVM DL A QGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQQL
Sbjct: 297 EAEVSIRKLNGKERVAEVMSDLDAAAQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 356
Query: 356 AGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTFSFTGM 403
AGINAVVYYSTSVFRS GI SDVAASALVGAANVF GRK+LL SF GM
Sbjct: 357 AGINAVVYYSTSVFRSAGITSDVAASALVGAANVFGTTIASSLMDKQGRKSLLLTSFAGM 416
Query: 404 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 463
A SMLLLSL+FTWK LAPY+GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV
Sbjct: 417 AVSMLLLSLTFTWKTLAPYAGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 476
Query: 464 ALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEI 523
ALSLGMHWISNFVIGLYFLSVV KFGISTVYLGFA+VCLLAV+YIA NVVETKGRSLEEI
Sbjct: 477 ALSLGMHWISNFVIGLYFLSVVTKFGISTVYLGFASVCLLAVMYIAGNVVETKGRSLEEI 536
Query: 524 ERALN 528
ERAL
Sbjct: 537 ERALT 541
|
Source: Olea europaea Species: Olea europaea Genus: Olea Family: Oleaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222423889|dbj|BAH19908.1| AT5G16150 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/547 (77%), Positives = 461/547 (84%), Gaps = 23/547 (4%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F + R R FA +S+A + S MG
Sbjct: 1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
L RA G++++ S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116
Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176
Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236
Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356
Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTFSFT 401
QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVF GRK+LL SF
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFG 416
Query: 402 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 461
GMA SMLLLSLSFTWK LA YSGTL V+GTVLYVLSFSLGAGPVPALLLPEIFASRIRAK
Sbjct: 417 GMALSMLLLSLSFTWKALAAYSGTLVVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 476
Query: 462 AVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 521
AVALSLGMHWISNFVIGLYFLSVV KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLE
Sbjct: 477 AVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLE 536
Query: 522 EIERALN 528
EIE AL
Sbjct: 537 EIELALT 543
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545878|ref|XP_003541360.1| PREDICTED: plastidic glucose transporter 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/550 (75%), Positives = 460/550 (83%), Gaps = 28/550 (5%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVAL-----NCNFTSNNSICMRDMG-- 53
MQAST+ ++ + F + RR GF R+ ++ C +N +C +G
Sbjct: 1 MQASTFGVEGA-TFGVQERRGLV----GFGEFRNGSVLRPRRVCMTKNNTDLCGLRLGSV 55
Query: 54 ---MKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVAC 110
+LT A G +F +VKPRSV+ AS G+IE+ P PQ K SSG VLP+VGVAC
Sbjct: 56 TMETELTSARIGFGGIFGPSVKPRSVRVMASDGNIEDVVPATPQGK-SSGNVLPYVGVAC 114
Query: 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
LGAILFGYHLGVVNGALEYLAKDLGI ENTV+QGWIVS+LLAGATVGSFTGGSLAD+FGR
Sbjct: 115 LGAILFGYHLGVVNGALEYLAKDLGITENTVIQGWIVSTLLAGATVGSFTGGSLADQFGR 174
Query: 171 TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA 230
TRTFQL ++PLA GAFL ATAQSVQ MIIGR+LAGIGIG++SAIVPLYISEISPTEIRGA
Sbjct: 175 TRTFQLASIPLAIGAFLGATAQSVQPMIIGRLLAGIGIGVTSAIVPLYISEISPTEIRGA 234
Query: 231 LGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
LGSVNQLFIC+GIL ALVAGLPLAGNP+WWR+MFG+A +PS+LLALGM +SPESPRWL Q
Sbjct: 235 LGSVNQLFICIGILLALVAGLPLAGNPIWWRSMFGIAIVPSVLLALGMAISPESPRWLVQ 294
Query: 291 QGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALF 350
QGK SEAEK+I+TLYG+ERV+ VM DLT A QGS+EPEAGW DLFSSRYWKVVSVGAALF
Sbjct: 295 QGKISEAEKAIKTLYGQERVAAVMNDLTTASQGSSEPEAGWLDLFSSRYWKVVSVGAALF 354
Query: 351 LFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTF 398
LFQQLAGINAVVYYSTSVFRS GI SDVAASALVGA+NVF GRK+LL
Sbjct: 355 LFQQLAGINAVVYYSTSVFRSAGIASDVAASALVGASNVFGTCIASSLMDKQGRKSLLIT 414
Query: 399 SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI 458
SF+GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI
Sbjct: 415 SFSGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI 474
Query: 459 RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 518
RAKAV+LSLG HWISNFVIGLYFLSVVNKFGIS+VYLGF+ VC+LAVLYIA NVVETKGR
Sbjct: 475 RAKAVSLSLGTHWISNFVIGLYFLSVVNKFGISSVYLGFSAVCVLAVLYIAGNVVETKGR 534
Query: 519 SLEEIERALN 528
SLEEIERAL+
Sbjct: 535 SLEEIERALS 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8347244|gb|AAF74566.1|AF215852_1 hexose transporter [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/493 (80%), Positives = 435/493 (88%), Gaps = 13/493 (2%)
Query: 51 DMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVAC 110
MG++L RA + V+++F S+ K RS + +AS GDIE+ATP K Q + SSG VLP+VGVAC
Sbjct: 43 SMGIELGRARKTVQSVFGSSAKARSHRVRASGGDIEDATPLKVQGQ-SSGSVLPYVGVAC 101
Query: 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
LGAILFGYHLGVVNGALEYLAKDLGI ENTV+QGWIVSS+LAGATVGSFTGG+LADKFGR
Sbjct: 102 LGAILFGYHLGVVNGALEYLAKDLGIVENTVIQGWIVSSVLAGATVGSFTGGALADKFGR 161
Query: 171 TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA 230
T+TF LDA+PLA GAFLC TAQSVQ MIIGR+L GIGIGISSAIVPLYISEISPTEIRG
Sbjct: 162 TKTFVLDAIPLAVGAFLCTTAQSVQAMIIGRLLTGIGIGISSAIVPLYISEISPTEIRGT 221
Query: 231 LGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
LG+VNQLFIC+GIL ALVAGLPL+GNPLWWRTMFG+A IPS+LLALGM SPESPRWLFQ
Sbjct: 222 LGTVNQLFICIGILVALVAGLPLSGNPLWWRTMFGIALIPSVLLALGMAFSPESPRWLFQ 281
Query: 291 QGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALF 350
QG+ SEAE SI+ LYGKERV+EVM DL + QGS+EP+AGW DLFSSRYWKVVS+GAALF
Sbjct: 282 QGRISEAETSIKRLYGKERVAEVMGDLEASAQGSSEPDAGWLDLFSSRYWKVVSIGAALF 341
Query: 351 LFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF------------GRKNLLTF 398
LFQQ AGINAVVYYST+VFRS GI SDVAASALVGAANVF GRK+LL
Sbjct: 342 LFQQFAGINAVVYYSTAVFRSAGISSDVAASALVGAANVFGTMVASSLMDKQGRKSLLLV 401
Query: 399 SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI 458
SFTGMAASM+LLSLSFTWKVL PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI
Sbjct: 402 SFTGMAASMMLLSLSFTWKVLTPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI 461
Query: 459 RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 518
RAKAVALSLGMHWISNF IGLYFLS+V KFGISTVYLGFA+VCLLAV+YI NVVETKGR
Sbjct: 462 RAKAVALSLGMHWISNFFIGLYFLSIVTKFGISTVYLGFASVCLLAVMYIVGNVVETKGR 521
Query: 519 SLEEIERALNPVV 531
SLE+IER L+P +
Sbjct: 522 SLEDIERELSPAI 534
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | ||||||
| TAIR|locus:2181422 | 546 | PGLCT "plastidic GLC transloca | 0.984 | 0.957 | 0.692 | 7.6e-183 | |
| TAIR|locus:2205548 | 524 | AT1G05030 [Arabidopsis thalian | 0.887 | 0.898 | 0.362 | 6.6e-81 | |
| TAIR|locus:2019554 | 494 | AT1G67300 [Arabidopsis thalian | 0.800 | 0.860 | 0.407 | 6.8e-79 | |
| TAIR|locus:2017899 | 495 | SGB1 "SUPPRESSOR OF G PROTEIN | 0.794 | 0.852 | 0.380 | 1.5e-74 | |
| TAIR|locus:2058193 | 509 | INT1 "inositol transporter 1" | 0.589 | 0.614 | 0.323 | 3.7e-54 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.544 | 0.498 | 0.342 | 1.9e-52 | |
| UNIPROTKB|Q96QE2 | 648 | SLC2A13 "Proton myo-inositol c | 0.653 | 0.535 | 0.303 | 9.6e-50 | |
| UNIPROTKB|E1BML6 | 648 | SLC2A13 "Uncharacterized prote | 0.685 | 0.561 | 0.290 | 1.6e-49 | |
| UNIPROTKB|F1PGX9 | 652 | SLC2A13 "Uncharacterized prote | 0.638 | 0.519 | 0.312 | 1.7e-49 | |
| DICTYBASE|DDB_G0278261 | 630 | DDB_G0278261 "solute carrier f | 0.517 | 0.436 | 0.324 | 1.2e-48 |
| TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1774 (629.5 bits), Expect = 7.6e-183, P = 7.6e-183
Identities = 378/546 (69%), Positives = 415/546 (76%)
Query: 1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
MQ+STYA+K + F + R R FA +S+A + S MG
Sbjct: 1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57
Query: 56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
L RA G++++ S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116
Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176
Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGS 233
FQLDA+PLA GAFLCATAQSVQTMI+GR+L VPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236
Query: 234 VNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
VNQLFIC+GI WWRTMFG+A IPS+LLA+GM SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356
Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFG------------RKNLLTFSFT 401
QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFG RK+LL SF
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFG 416
Query: 402 GXXXXXXXXXXXFTWKVLAPYSGTLAVLGTVLYVLSFSXXXXXXXXXXXXEIFASRIRAK 461
G FTWK LA YSGTLAV+GTVLYVLSFS EIFASRIRAK
Sbjct: 417 GMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 476
Query: 462 AVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 521
AVALSLGMHWISNFVIGLYFLSVV KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLE
Sbjct: 477 AVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLE 536
Query: 522 EIERAL 527
EIE AL
Sbjct: 537 EIELAL 542
|
|
| TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 178/491 (36%), Positives = 269/491 (54%)
Query: 57 TRATQGVETLFRSTVKPRSVKAQASA--GDIEEATPFKPQAKKSSGV----VLPFVGVAC 110
+R FRS+ + + V ++ D E +P P+ K S+ + P V VA
Sbjct: 29 SRKASSFSRFFRSSKRKKRVTTLSTKKPDDDHEISPVPPE-KFSADLGWLSAFPHVSVAS 87
Query: 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
+ LFGYH+GV+NG + +A++LG N++L+G +VS +AGA +GS G L DKFG
Sbjct: 88 MANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGY 147
Query: 171 TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGA 230
RTFQ+ +PL GA + A A S+ ++ GR L VP+YISE++PT+ RG+
Sbjct: 148 RRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 207
Query: 231 LGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
LG++ Q+ C+GI WWRTM +A++P LLALGM + ESPRWL +
Sbjct: 208 LGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGMQFAVESPRWLCK 267
Query: 291 QGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEP-EAGWFDLFSSRYWKVVSVGAAL 349
G+ +A+ I+ ++G V + + D + + S + W +L + +V +G +L
Sbjct: 268 VGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSL 327
Query: 350 FLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFG------------RKNLLT 397
F+ QQ AGIN V+Y+S+ F++VGI S AS VG N G RK LL
Sbjct: 328 FVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASYLIDKQGRKKLLI 387
Query: 398 FSFTGXXXXXXXXXXXFTWKVLAPYSGTLAVLGTVLYVLSFSXXXXXXXXXXXXEIFASR 457
S+ G + + S +L++LGT++Y+ SF+ E+ ++R
Sbjct: 388 GSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNR 447
Query: 458 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKG 517
R K + S +HW+SNF++GL+FL +V K+G+ TVY F +V LLA + + VETKG
Sbjct: 448 TRGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKG 507
Query: 518 RSLEEIERALN 528
RSLEEIE +LN
Sbjct: 508 RSLEEIELSLN 518
|
|
| TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 179/439 (40%), Positives = 252/439 (57%)
Query: 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
LP V VA + + LFGYHLGVVN LE ++ DLG + +T+ +G +VS L GA +GS G
Sbjct: 52 LPHVLVATISSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSG 111
Query: 163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEI 222
+AD FGR R FQ+ A+P+ GAF+ + S+ M++GR L LY++E+
Sbjct: 112 GVADGFGRRRAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEV 171
Query: 223 SPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSP 282
SP +RG GS Q+ C+G+ WWR F L+ IP+ LLALGM L
Sbjct: 172 SPAFVRGTYGSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCA 231
Query: 283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSA-EPEA-GWFDLFSSRYW 340
ESP+WLF+QGK +EAE + L G V M +L EP+ +L R+
Sbjct: 232 ESPQWLFKQGKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHS 291
Query: 341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD-----VAASALVGA--ANVF--- 390
+VV +G+ LF QQL+GINAV Y+S++VF+S G+ SD V S L+G+ A V
Sbjct: 292 RVVFIGSTLFALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDK 351
Query: 391 -GRKNLLTFSFTGXXXXXXXXXXXFTWKVLAPYSGT-LAVLGTVLYVLSFSXXXXXXXXX 448
GRK LL +SF G T L +S L+V GT+++VL+F+
Sbjct: 352 VGRKLLLLWSFIGMVCSAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGL 411
Query: 449 XXXEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYI 508
EIF SRIRAKA+A + +HW+ NF +GL FL ++ K G +Y F+T CL+AV+++
Sbjct: 412 LLPEIFPSRIRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFV 471
Query: 509 AVNVVETKGRSLEEIERAL 527
NV+ETKG++L+EIE +L
Sbjct: 472 KRNVIETKGKTLQEIEISL 490
|
|
| TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 167/439 (38%), Positives = 248/439 (56%)
Query: 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
LP V VA L ++LFGYHLGVVN LE ++ DLG + NT+ +G +VS+ L GA +GS G
Sbjct: 55 LPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSG 114
Query: 163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEI 222
+AD GR R FQL A+P+ GA + A+ +S+ M++GR L LY++E+
Sbjct: 115 LVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEV 174
Query: 223 SPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSP 282
SP +RG GS Q+ C+G+ WWR F ++ +P+ +LA+ M L
Sbjct: 175 SPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCV 234
Query: 283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342
ESP+WLF++G+ +EAE + L G V M +L + +G A +L R ++V
Sbjct: 235 ESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRV 294
Query: 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFG----------- 391
V +G+ LF QQL+GINAV Y+S++VF+ G+ S +A+ VG N+ G
Sbjct: 295 VFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPS-ASANICVGVCNLLGSTVAVVLMDKL 353
Query: 392 -RKNLLTFSFTGXXXXXXXXXXXFTWKVLAPYSGTL--AVLGTVLYVLSFSXXXXXXXXX 448
RK LL SF G +T + +P+ GTL +V G +L+VLSF+
Sbjct: 354 GRKVLLIGSFAGMAVSLGLQAIAYT-SLPSPF-GTLFLSVGGMLLFVLSFATGAGPVPSL 411
Query: 449 XXXEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYI 508
EI R+RA A+A+ L +HW+ NF +GL FL ++ + G + F C++AV+++
Sbjct: 412 LLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFV 471
Query: 509 AVNVVETKGRSLEEIERAL 527
NVVETKG+SL+EIE +L
Sbjct: 472 QKNVVETKGKSLQEIEISL 490
|
|
| TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 104/321 (32%), Positives = 163/321 (50%)
Query: 78 AQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA 137
A S+G ++ P + + + +L A +G +LFGY GV++GAL Y+ D +
Sbjct: 8 APGSSGYLD-MFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVV 66
Query: 138 -ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT 196
+++ LQ IVS L GA +G+ GG + D +GR + V AAGA + A A
Sbjct: 67 KQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYV 126
Query: 197 MIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXX 256
+I GR+L P+YI+E SP+E+RG L S N L I G
Sbjct: 127 LISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQV 186
Query: 257 XXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLD 316
WR M G++ +P+++ + M PESPRWLF + +K+EA + + Y R+ + +
Sbjct: 187 PGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDH 246
Query: 317 LTNAGQGSAEPE--AGWFDLFSSRYWKVVSV-GAALFLFQQLAGINAVVYYSTSVFRSVG 373
L+ A + + + G+ D+F S+ ++ + GA L FQQ GIN V+YYS ++ + G
Sbjct: 247 LSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG 306
Query: 374 IESDVAA---SALVGAANVFG 391
S+ A S +V A N G
Sbjct: 307 FHSNQLALFLSLIVAAMNAAG 327
|
|
| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 103/301 (34%), Positives = 149/301 (49%)
Query: 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFT 160
VL A +G +LFGY GV++GAL Y+ D + NT LQ IVS +AGA VG+
Sbjct: 28 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAI 87
Query: 161 GGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYIS 220
GG DK GR + GA + A A + +++GRV PLYIS
Sbjct: 88 GGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYIS 147
Query: 221 EISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGL 280
E SP +IRGAL S N I G WR M G+A IP++L + M
Sbjct: 148 EASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPALLQFVLMFT 207
Query: 281 SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNA------GQGSAEPEAGWFDL 334
PESPRWL+++G++ EA+ ++ +Y E V + + L ++ +GS+E + L
Sbjct: 208 LPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSE-KINMIKL 266
Query: 335 FSSR-YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA---SALVGAANVF 390
++ + + G L +FQQ GIN V+YYS ++ + G S+ A S + N F
Sbjct: 267 CKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAF 326
Query: 391 G 391
G
Sbjct: 327 G 327
|
|
| UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 9.6e-50, Sum P(2) = 9.6e-50
Identities = 110/362 (30%), Positives = 173/362 (47%)
Query: 83 GDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVL 142
GD+E A + Q ++ V + LG LFGY GVV+GA+ L + L + + +
Sbjct: 62 GDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSL--DALW 119
Query: 143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202
Q +VSS + A V + GG+L FGR L + AG+ + A A + +T++ GR+
Sbjct: 120 QELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRL 179
Query: 203 LXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVG-IXXXXXXXXXXXXXXXWWR 261
+ VP+YI+E+SP +RG L ++N LFI G WR
Sbjct: 180 VVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWR 239
Query: 262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG 321
M GLAA+P+++ G PESPRWL Q+G+ +A + + + G + + E + N
Sbjct: 240 YMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNI 299
Query: 322 QGSAEPEAGWFDLFSSRYW------KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIE 375
+ E E G R + + VG L +FQQL+GIN ++YYS ++ + G+E
Sbjct: 300 E-EEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVE 358
Query: 376 SDVAASALVGAANVFGRKNLLTFSFTGXXXXXXXXXXXFTWKVLAPYSGTLAVLGTVLYV 435
D A + A+V N + F+ G T+ LA + L +L + +V
Sbjct: 359 DDRLA---IWLASVTAFTNFI-FTLVGVWLVEKVGRRKLTFGSLAGTTVALIILA-LGFV 413
Query: 436 LS 437
LS
Sbjct: 414 LS 415
|
|
| UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 111/382 (29%), Positives = 178/382 (46%)
Query: 59 ATQGVETLFRSTVKPRSVKAQASAG----DIEEATPFKPQAKKSSGVVLPFVGVACLGAI 114
+T G +L + S++ + G D+E A + Q ++ V + LG
Sbjct: 34 STAGERSLLAAAESSASLQGAGAGGGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGF 93
Query: 115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174
LFGY GVV+GA+ L + L + + + Q +VSS + A V + GG+L FGR
Sbjct: 94 LFGYDTGVVSGAMLLLKRQLSL--DAMWQELLVSSTVGAAAVSALAGGALNGVFGRRAAI 151
Query: 175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSV 234
L + AG+ + A A + +T++ GR++ VP+YI+E+SP +RG L ++
Sbjct: 152 LLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTI 211
Query: 235 NQLFICVG-IXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
N LFI G WR M GLAAIP+++ G PESPRWL Q+G+
Sbjct: 212 NTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQ 271
Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW------KVVSVGA 347
+A + + + G + + E + N + E E G R + + VG
Sbjct: 272 TQKARRILSQMRGNQTIDEEYDSIKNNIE-EEEKEVGSAGPVICRMLSYPPTRRALIVGC 330
Query: 348 ALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGRKNLLTFSFTGXXXXX 407
L +FQQL+GIN ++YYS ++ + G+E D A + A++ N + F+ G
Sbjct: 331 GLQMFQQLSGINTIMYYSATILQMSGVEDDRLA---IWLASITAFTNFI-FTLVGVWLVE 386
Query: 408 XXXXXXFTWKVLAPYSGTLAVL 429
T+ LA + L +L
Sbjct: 387 KVGRRKLTFGSLAGTTVALIIL 408
|
|
| UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 1.7e-49, Sum P(2) = 1.7e-49
Identities = 111/355 (31%), Positives = 172/355 (48%)
Query: 83 GDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVL 142
GD+E A + Q ++ V + LG LFGY GVV+GA+ L + L + + +
Sbjct: 66 GDLERAARRQFQQDETPAFVYVAAVFSALGGFLFGYDTGVVSGAMLLLKRQLSL--DALW 123
Query: 143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202
Q +VSS + A V + GG+L FGR L + AAG+ + A A + +T++ GR+
Sbjct: 124 QELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFAAGSAVLAAAGNRETLLAGRL 183
Query: 203 LXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVG-IXXXXXXXXXXXXXXXWWR 261
+ VP+YI+E+SP +RG L ++N LFI G WR
Sbjct: 184 VVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWR 243
Query: 262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG 321
M GLAAIP+++ G PESPRWL Q+G+ +A + + + G + + E + N
Sbjct: 244 YMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNI 303
Query: 322 Q------GSAEPEAGWFDLFS-SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGI 374
+ GSA P + + S + + VG L +FQQL+GIN ++YYS ++ + G+
Sbjct: 304 EEEEKEVGSAGPVI--YRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGV 361
Query: 375 ESDVAASALVGAANVFGRKNLLTFSFTGXXXXXXXXXXXFTWKVLAPYSGTLAVL 429
E D A + A+V N + F+ G T+ LA + L VL
Sbjct: 362 EDDRLA---IWLASVTAFTNFI-FTLVGVWLVEKVGRRKLTFGSLAGTTVALLVL 412
|
|
| DICTYBASE|DDB_G0278261 DDB_G0278261 "solute carrier family 2 member protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 93/287 (32%), Positives = 142/287 (49%)
Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
V + L + FGY+ GV++ + + G+ N + +VSS+L GA +GSF G
Sbjct: 183 VSFSVLSTLQFGYNTGVISPTILDIQTIFGLNVNE--KSMLVSSVLFGAMLGSFLSGFFV 240
Query: 166 DKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPT 225
D FGR +T + + G LC+ ++ T++IGR++ VPLYI+EISP
Sbjct: 241 DIFGRKKTLLGNNLFYLLGPLLCSVGKNYATLLIGRLITGVGVGIASSVVPLYITEISPP 300
Query: 226 EIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSIL-LALGMGLSPES 284
RG+LG + Q + +GI WR F +A+IPS+ LG ES
Sbjct: 301 SFRGSLGLLRQSTVTLGIMLSSLFAYGLLVYSNGWRYTFAIASIPSLFQFILGYWFV-ES 359
Query: 285 PRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDL--TNAGQGSAEPEAG--WFDLFSSRYW 340
PRWL + ++ EA++ ++ + + VSE ++DL T E + W LF +Y
Sbjct: 360 PRWLVSKNREDEAKQIMKKI--EPHVSEDLIDLQITRIRSSVLEQKGNDNWLQLFQYQYL 417
Query: 341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA--SALVG 385
K+ +G L + QQ GIN V+YYS + G + A ALVG
Sbjct: 418 KIYIIGFGLNMLQQFVGINCVIYYSGIILEDAGFAKNAAVLIGALVG 464
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8TDB8 | GTR14_HUMAN | No assigned EC number | 0.3234 | 0.8173 | 0.8346 | yes | no |
| P28568 | GTR3_CHICK | No assigned EC number | 0.3126 | 0.8154 | 0.8729 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3512 | 0.8003 | 0.9299 | yes | no |
| Q56ZZ7 | PLST4_ARATH | No assigned EC number | 0.7751 | 0.9868 | 0.9597 | yes | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3064 | 0.8041 | 0.9343 | yes | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3156 | 0.8097 | 0.9267 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | scaffold_601651.1 | annotation not avaliable (545 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | Al_scaffold_0003_483 | annotation not avaliable (221 aa) | • | 0.429 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 531 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-92 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-85 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-69 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-19 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-18 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 3e-16 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 7e-14 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-12 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 4e-11 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-10 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 9e-10 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-09 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 2e-07 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 7e-06 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-05 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.001 | |
| PRK10504 | 471 | PRK10504, PRK10504, putative transporter; Provisio | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 4e-92
Identities = 158/448 (35%), Positives = 235/448 (52%), Gaps = 30/448 (6%)
Query: 108 VACLGAILFGYHLGVVNGALEYLAKDL---------GIAENTVLQGWIVSSLLAGATVGS 158
VA LG LFGY GV+ L + A +TVL G IVS G +GS
Sbjct: 4 VAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGS 63
Query: 159 FTGGSLADKFGRTRTFQLDAVPLAAGAFL--CATAQSVQTMIIGRVLAGIGIGISSAIVP 216
G L D+FGR ++ + V GA L A +S +I+GRV+ G+G+G S +VP
Sbjct: 64 LFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVP 123
Query: 217 LYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA--GNPLWWRTMFGLAAIPSILL 274
+YISEI+P ++RGALGS+ QL I GIL A + GL L N WR GL +P+ILL
Sbjct: 124 MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILL 183
Query: 275 ALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEV---MLDLTNAGQGSAEPEAGW 331
+G+ PESPRWL +GK EA + L G V + D + +
Sbjct: 184 LIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASWLE 243
Query: 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANV-- 389
+ + +G L +FQQL GINA+ YYS ++F ++G+ + + +VG N
Sbjct: 244 L-FRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFVF 302
Query: 390 ----------FGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFS 439
FGR+ LL GMA L+L ++ + +G +A++ +L++ F+
Sbjct: 303 TFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFA 362
Query: 440 LGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFAT 499
LG GPVP +++ E+F +R KA+A++ +W++NF+IG F + G V+L FA
Sbjct: 363 LGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGY-VFLVFAG 421
Query: 500 VCLLAVLYIAVNVVETKGRSLEEIERAL 527
+ +L +L++ V ETKGR+LEEI+
Sbjct: 422 LLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 271 bits (696), Expect = 2e-85
Identities = 162/450 (36%), Positives = 250/450 (55%), Gaps = 34/450 (7%)
Query: 108 VACLGAILFGYHLGVVNGALE------YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTG 161
+A +G ++FGY GV+ GAL + ++ L G +VS L G +G+
Sbjct: 32 IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFA 91
Query: 162 GSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIGRVLAGIGIGISSAIVPLY 218
G L+D+FGR ++ + A+ GA L A A SV+ +I+GRVL GIG+GI+SA+VP+Y
Sbjct: 92 GWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMY 151
Query: 219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLP--LAGNPLWWRTMFGLAAIPSILLAL 276
+SEI+P +RGAL S+ QL I GIL A G N L WR GL IP+ LL L
Sbjct: 152 LSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL 211
Query: 277 GMGLSPESPRWLFQQGKKSEAEKSIQTLYG-----KERVSEVMLDLTNAGQGSAEPEAGW 331
G+ PESPRWL +G+ EA KS+ L G KE + E+ L + W
Sbjct: 212 GLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSW 271
Query: 332 FDLFSS--RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAA 387
LFSS R + + +G L FQQ GINA++YYS ++F + G+ +D S +VGA
Sbjct: 272 GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAV 331
Query: 388 NV------------FGRKNLLTFSFTGMAASMLLLSLSFTWKV--LAPYSGTLAVLGTVL 433
N FGR+ LL GMA + +L + V + SG +A++ +L
Sbjct: 332 NFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL 391
Query: 434 YVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTV 493
++ F++G GPVP +++ EIF +R K +++++ +W++NF++G F +++ G+ V
Sbjct: 392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV 451
Query: 494 YLGFATVCLLAVLYIAVNVVETKGRSLEEI 523
++ F + +L ++++ + ETKGR+LEEI
Sbjct: 452 FIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 2e-69
Identities = 144/479 (30%), Positives = 238/479 (49%), Gaps = 61/479 (12%)
Query: 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYL------AKDLGIAENTVLQGWIVSS 149
+ +S + VA LG +LFGY V++G +E L ++L + L G+ V+S
Sbjct: 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVAS 63
Query: 150 LLAGATVGSFTGGSLADKFGRTRT-------FQLDAVPLAAGAFLCATAQS-----VQTM 197
L G +G GG +++FGR + F + A+ A F + V
Sbjct: 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF 123
Query: 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257
+I R++ GIG+G++S + P+YI+EI+P IRG L S NQ I G L +A +
Sbjct: 124 VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSG 183
Query: 258 --LW-----WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERV 310
W WR MF AIP++L + + PE+PR+L +GK+ +AE ++ + G
Sbjct: 184 DASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA 243
Query: 311 SEVMLDLTNA---GQGSAEPEAGWFDLFSSRYWK-VVSVGAALFLFQQLAGINAVVYYST 366
++ + ++ ++ G+ + L + V+ +G L +FQQ GIN V+YY+
Sbjct: 244 TQALQEIKHSLDHGRKTGGK------LLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAP 295
Query: 367 SVFRSVGIESDVA--ASALVGAANV------------FGRKNLLTFSFTGMAASMLLLSL 412
+F+++G +D+A + +VG N+ FGRK L GMA M L
Sbjct: 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 355
Query: 413 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWI 472
+F + G +A+L + YV +F++ GPV +LL EIF + IR KA+A+++ WI
Sbjct: 356 AFYTQA----PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411
Query: 473 SNFVIGLYF------LSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIER 525
+N+ + F +V F Y + + +LA L++ V ETKG++LEE+E
Sbjct: 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 6e-19
Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
+ + LG L G G+++ AL LA+DLG++ + G IVS+ G +GS G L+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58
Query: 166 DKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
D+FGR R L + A G+ L A A S+ +++GR L G+G G I+E P
Sbjct: 59 DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118
Query: 226 EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278
+ RG + +G L + G LA + L WR +F + AI +LLAL +
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAILGLLLALLL 170
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-18
Identities = 89/380 (23%), Positives = 158/380 (41%), Gaps = 32/380 (8%)
Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
+ ++ L ++ GY L + A ++ + G+ + V G++ S+ L G G+ G LA
Sbjct: 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGL--DPVQLGFLFSAGLIGMAFGALFFGPLA 76
Query: 166 DKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
D+ GR R + + LCA A +V ++I R LAG+G+G + +SE +P
Sbjct: 77 DRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK 136
Query: 226 EIRG-ALGSVNQLFICVGILAALVAG--LPLAGNPLWWRTMFGLAAI-PSILLALGMGLS 281
RG A+G + + + +AG +P+ G WR++F + I P +LL L M
Sbjct: 137 RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG----WRSLFYVGGIAPLLLLLLLMRFL 192
Query: 282 PESPRWLFQQGKKSEAEK--SIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339
PES +L + ++ +I E S + G + +A LF +
Sbjct: 193 PESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKA----LFQGKT 248
Query: 340 WKVVSVGAALFLFQQLAGINAVVYYSTS--VFRSVGIESDVAASALVGAANVFGRKNLLT 397
++ + L+ + VY+ T+ V + ++ +A GA FG + +
Sbjct: 249 ARITVLLWLLYFMLLV-----GVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGV-IGS 302
Query: 398 FSFTGMA--------ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALL 449
F +A A +LLL F V + +L F G L
Sbjct: 303 IIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYAL 362
Query: 450 LPEIFASRIRAKAVALSLGM 469
+ + + IRA V ++G+
Sbjct: 363 MALFYPTAIRATGVGWAIGI 382
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 3e-16
Identities = 96/407 (23%), Positives = 160/407 (39%), Gaps = 44/407 (10%)
Query: 136 IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ 195
+ E+ S G +GSF G L+D+FGR + L + A L A + +
Sbjct: 122 VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT 181
Query: 196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255
++ R+L G+GIG + +E P + R +G++ Q+F +G++ L+ +
Sbjct: 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV--LLPLVAYFI 239
Query: 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQ---TLYGKERVSE 312
WR + ++P+ L L PESPRWL QG+ EA K +Q + GK+ +E
Sbjct: 240 PD--WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE 297
Query: 313 V-MLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS 371
V L L S++ + + DLF + + + L A YY +
Sbjct: 298 VLSLSLEKDL-SSSKKQYSFLDLFRTPNLRKTT-----LCLMMLWFTTAFSYYGLVLDLG 351
Query: 372 ---VGIESDVAASALVG---------AANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVL 419
I D+ S LV + GR+ + S ++LLL +
Sbjct: 352 NLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF------V 405
Query: 420 APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM----HWISNF 475
L VL A + L E++ + +R V + M IS F
Sbjct: 406 PVDLYFLRTALAVLGK-FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPF 464
Query: 476 VIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEE 522
++ L + + F + LLA + + + + ETKG L E
Sbjct: 465 LVYLGEKWLFLPLVL------FGGLALLAGI-LTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 7e-14
Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 20/196 (10%)
Query: 117 GYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176
G + VV L KDL I ++ +G + + G VG+F G LADK GR + +
Sbjct: 180 GVEVFVVGFVLPSAEKDLCIPDSG--KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237
Query: 177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA-LGSVN 235
AF + Q + R+L+G GIG + IV Y +E E RG L +
Sbjct: 238 CLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC 297
Query: 236 QLFICVGILAALVAG--LPLAGNPLW------------WRTMFGLAAIPSILLALGMGLS 281
++ GI AA +A +P G W WR + A P + +
Sbjct: 298 MFWMIGGIYAAAMAWAIIPHYG---WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM 354
Query: 282 PESPRWLFQQGKKSEA 297
PESPR+ + GK EA
Sbjct: 355 PESPRFFLENGKHDEA 370
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 79/371 (21%), Positives = 137/371 (36%), Gaps = 32/371 (8%)
Query: 110 CLGAILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF 168
L A L G ++ AL YLA+DLGI+ + G ++++ G + G L+D+F
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLSDRF 59
Query: 169 GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR 228
GR R + + A G L A S+ +++ RVL G+G G I++ P E R
Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 229 GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA-LGMGLSPESPRW 287
G + +G + G LA WR F + AI ++L A L L P P
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASL-FGWRAAFLILAILALLAAVLAALLLPRPPPE 178
Query: 288 LFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGA 347
+ EA + + V+ + ++
Sbjct: 179 SKRPKPAEEAPAPLVPAWKLLLRDPVLW---------------LLLALLLFGFAFFALLT 223
Query: 348 ALFLFQQLAGINAVVYYST-SVFRSVGIESDVAASALVGAANVFGRKNLLTFSFTGMAAS 406
L L+Q++ G++A++ + +G + L ++ GR+ L + + +
Sbjct: 224 YLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRL---SDRLGRRRRLLLALLLLILA 280
Query: 407 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLG-AGPVPALLLPEIFASRIRAKAVAL 465
L L L + + L L +L F G P L+ ++ R A L
Sbjct: 281 ALGL-------ALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGL 333
Query: 466 SLGMHWISNFV 476
+ +
Sbjct: 334 YNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 79/344 (22%), Positives = 123/344 (35%), Gaps = 37/344 (10%)
Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199
TV ++S+ L G+ G D++GR V +AG C A TM I
Sbjct: 46 TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFI 105
Query: 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPL 258
R++ GIG+G Y+ E P +R + VG ++AA V L +
Sbjct: 106 ARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165
Query: 259 WWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKE-RVSEVMLDL 317
WR +F ++ +P I PE+ W + K+ + LYG E R++ +++ L
Sbjct: 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTL 225
Query: 318 TNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD 377
A SA + W L LF L T + +G+
Sbjct: 226 AAAMVQSAG-----------KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPH 274
Query: 378 VAASALV----GAA----------NVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 423
A+ +V GA + GR+ S LL V A
Sbjct: 275 TVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCS--------LLAGQLLIIPVFA-IG 325
Query: 424 GTLAVLGTVLYVLSFSL-GAGPVPALLLPEIFASRIRAKAVALS 466
+AVLG L+ + G + L E F + RA + +
Sbjct: 326 ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 116/467 (24%), Positives = 177/467 (37%), Gaps = 105/467 (22%)
Query: 142 LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV-----PLAAGAFLCATAQSVQT 196
+ + S G G G LADK GR R + ++ + +A+G ++ +SV
Sbjct: 57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMA 116
Query: 197 MIIG-RVLAGIGIG----ISSAIVPLYISEISPTEIRGAL-GSV--NQLFICVGILA-AL 247
+ R G+GIG +S+ I SE + + RGA+ +V Q F GILA A+
Sbjct: 117 TLCFWRFWLGVGIGGDYPLSAIIT----SEFATKKWRGAMMAAVFAMQGF---GILAGAI 169
Query: 248 VAGLPLAG--NPL-------------------WWRTMFGLAAIPSILLALGMGLSPESPR 286
VA + LAG + L WR + G A+P++L PE+PR
Sbjct: 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPR 229
Query: 287 WLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS-RYWK--VV 343
+ K E S + + ++ ++ A P+A W D F+ W+
Sbjct: 230 YTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKH 289
Query: 344 SVGAAL--------FLFQQL--AGINAVVYYSTSVFRSVGIES--DVAAS----ALVGAA 387
+G A F L I + + YS + E A AL G
Sbjct: 290 LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTV 349
Query: 388 -----NVF-----GRK--NLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 435
VF GRK L+ F + L L F + L+ + G LA +YV
Sbjct: 350 PGYWVTVFLVDIIGRKPIQLMGFFILTV----LFFVLGFAYNHLSTH-GFLA-----IYV 399
Query: 436 LS-FSLGAGP------VPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV--- 485
L+ F GP VP E+F +R R+ A +S + FL +
Sbjct: 400 LAQFFANFGPNATTFIVPG----EVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455
Query: 486 -------NKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIER 525
+ V FA L +L+ + + ETKG+SLEE+
Sbjct: 456 DPTKGYPTGIWMGHVLEIFALFMFLGILFTLL-IPETKGKSLEELSG 501
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 9e-10
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 18/212 (8%)
Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ-GWIVSSLLAGATVGSFTGGSL 164
+G+ L A+L G L A +A++ G+ V Q GW S+ + G G+ GG L
Sbjct: 17 IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLD---VAQMGWAFSAGILGLLPGALLGGRL 73
Query: 165 ADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYI--- 219
AD+ GR R L G F ATAQ ++++ R+L G+G+G +P I
Sbjct: 74 ADRIGRKRI--LIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLG---GALPNLIALT 128
Query: 220 SEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAGNPLWWRTMFGLAAI-PSILLALG 277
SE +RG S+ + G LA+++ LA WR +F + + P +L+ L
Sbjct: 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIG--VLAAGDAAWRHIFYVGGVGPLLLVPLL 186
Query: 278 MGLSPESPRWLFQQGKKSEAEKSIQTLYGKER 309
M PES + G + ++ L+G+ R
Sbjct: 187 MRWLPESRAFAQAAGAGKQRAPVLRALFGEGR 218
|
Length = 406 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181
V G L +A DLG++E G ++++ G +G+ L + R R
Sbjct: 31 VPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88
Query: 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFIC 240
L A A S +++ R LAG+ G+ +I + + P RG AL V
Sbjct: 89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVF----- 143
Query: 241 VGILAALVAGLPLA---GNPLWWRTMFGLAAIPSILLALGM 278
G+ A V G+PL G WR F A+ ++L L +
Sbjct: 144 TGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLL 184
|
Length = 394 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181
+VN A+ +A DLG + + V W+++S + + G LA +FG R F +
Sbjct: 20 IVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF 77
Query: 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFIC 240
G+ LC A +++ MII RV+ G G G + + I P E RG A+
Sbjct: 78 TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMA-----IWG 132
Query: 241 VGILAALVAGLPLAG---NPLWWRTMFGLAAIPSI 272
+ +L A G L G WR +F + I
Sbjct: 133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGI 167
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188
L +DLG+ + G++ S+ G VG F GG L D+FG +T + V G F
Sbjct: 19 MLQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIV--IWGVFTG 74
Query: 189 ATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG--IL 244
A + ++ I RVL G + L ++ P R S+ +G I
Sbjct: 75 LQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIG 134
Query: 245 AALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276
LV + + W+ F + + I+ +
Sbjct: 135 GPLVGWILIH---FSWQWAFIIEGVLGIIWGV 163
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 3/177 (1%)
Query: 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFT 160
++ + +A +L + G++ YL + LG++ G ++S G +G+
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALL 230
Query: 161 GGSLADKFGRTRTFQLDAVPLAA-GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYI 219
GG L+D+ GR R L + LAA G L A A S+ +++ +L G G+G + +
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA 290
Query: 220 SEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276
SE++P E RG + F +G + L + LAA+ + L
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 345 VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA---SALVGAANVFG---------- 391
+ AL F G ++ Y + V S A +L G + G
Sbjct: 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR 237
Query: 392 ---RKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPAL 448
R+ LL A +LLL+L+ + L ++ +L + L
Sbjct: 238 LGRRRLLLLIGLLLAALGLLLLALAPSL--------ALLLVALLLLGFGLGFAFPALLTL 289
Query: 449 LLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYI 508
E+ R A L + + L +++ G V+L A + LLA L +
Sbjct: 290 A-SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
Query: 509 AV 510
+
Sbjct: 349 LL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 7e-06
Identities = 35/141 (24%), Positives = 53/141 (37%)
Query: 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203
G +++ G + S G L D+FGR + + A + ++ +II R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263
G G + I++I P E RG + I +G L G LA W
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 264 FGLAAIPSILLALGMGLSPES 284
LA + L L PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
Query: 148 SSLLAGATVGSFTGG----SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203
+SL++ A + + GG ++ D++GR + V + G C A T+ I R++
Sbjct: 58 ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLV 117
Query: 204 AGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFICVGILAALVAGLPLAGNPLW-WR 261
G+G+ Y+ E P +R A G + F ++AA V L + P+W WR
Sbjct: 118 IGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV---PVWGWR 174
Query: 262 TMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKER 309
+F + +P I+ AL + + PE+ W + K+ + LY E
Sbjct: 175 ALFFIGILP-IIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH 222
|
Length = 496 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG 169
L +L + V NG L Y + N L ++ A +G+ LA +FG
Sbjct: 228 LLLYLLNALAMAVRNGLLLYYFTY--VLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFG 285
Query: 170 RTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222
+ RTF L + A G L S+ ++ VLAGIG+G+++ + ++++
Sbjct: 286 KKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADV 340
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 65/341 (19%), Positives = 123/341 (36%), Gaps = 67/341 (19%)
Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT--------MIIGRVLAGIG 207
+G+ G D+ GR +T + + + G L S T +++ R++ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL------AGNPLW-W 260
+G LY++E +P RG GS Q+ VG+L A + L L W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 261 RTMFGLAA-IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319
R F ++A + I L L L E+P + Q K + I
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLE-ETPVFEKAQEKHKKKRGPIAETL-------------- 214
Query: 320 AGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA 379
+++ K +G L + Y T + +++G+ ++ A
Sbjct: 215 -----------------TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSA 257
Query: 380 ASALVGAANVFGRKNLLTFSFTGMAA-------SMLLLSLS---FTWKVLAPYSG----T 425
L+ + +F +T +G + +++ ++ +L T
Sbjct: 258 LLVLMLSLILFF----ITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFT 313
Query: 426 LAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS 466
L + L + GP+ + LPE+F + +R +L+
Sbjct: 314 LFFFLVLGMALIGGMYTGPMGS-FLPELFPTEVRYTGASLA 353
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
Query: 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQG-WIVSSLLAGATVGSFTGGSLADK 167
A LG + G+ ++ + + DLG+ T ++G ++ ++ G G G LADK
Sbjct: 23 AWLGYVFDGFDFMLIFYIMYLIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADK 79
Query: 168 FGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI 227
FGR V + G L A V + + R + G+G+ A Y E P +
Sbjct: 80 FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139
Query: 228 RGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286
+ + +G I+AA +P WR F + +P +L+ +PES
Sbjct: 140 KSKASAFLVSGFGIGNIIAAYF--MPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKE 197
Query: 287 W----LFQQGKKSEAEKSIQTL 304
W L +GK S++ S+ +L
Sbjct: 198 WEEAKLSGKGKHSQSAWSVFSL 219
|
Length = 426 |
| >gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 122 VVNGALEYLAKDLGIAENTV-LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180
+VN AL +A+ LG E+ + + IVS +L A + +G LAD+ G F V
Sbjct: 28 IVNTALPSMAQSLG--ESPLHMHMVIVSYVLTVAVMLPASGW-LADRVGVRNIFFTAIVL 84
Query: 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226
G+ CA + ++ +++ RVL G+G + + L + +I P E
Sbjct: 85 FTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE 130
|
Length = 471 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.98 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.98 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.98 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.92 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.91 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.88 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.88 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.86 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.85 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.83 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.83 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.83 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.82 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.79 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.78 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.77 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.77 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.76 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.74 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.73 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.72 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.68 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.65 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.59 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.59 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.58 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.58 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.56 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.56 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.54 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.54 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.51 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.5 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.5 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.49 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.46 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.46 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.45 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.44 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.44 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.43 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.43 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.41 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.4 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.39 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.39 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.39 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.38 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.37 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.37 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.36 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.35 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.34 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.32 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.32 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.32 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.31 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.28 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.27 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.27 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.26 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.26 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.25 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.25 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.24 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.23 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.22 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.22 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.22 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.2 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.19 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.19 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.19 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.19 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.18 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.18 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.17 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.17 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.15 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.15 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.15 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.14 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.13 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.13 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.13 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.12 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.09 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.09 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.07 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.07 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.07 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.07 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.07 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.07 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.06 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.06 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.04 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.04 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.03 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.03 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.02 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.02 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.01 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.99 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.97 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.96 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.95 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.93 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.92 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.9 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.87 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.85 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.84 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.83 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.82 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.82 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.81 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.79 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.78 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.73 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.71 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.7 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.68 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.66 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.66 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.65 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.65 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.63 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.62 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.61 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.61 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.57 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.56 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.55 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.53 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.52 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.52 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.5 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.49 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.49 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.48 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.48 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.42 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.4 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.36 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.32 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.3 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.3 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.26 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.22 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.08 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.07 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.0 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.97 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.8 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.78 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.78 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.75 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.71 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.64 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.62 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.57 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.52 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.49 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.14 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.1 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.91 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.67 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.63 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.32 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.17 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.02 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.11 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.87 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 94.77 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 94.45 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 94.13 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.36 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 93.17 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.9 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 90.62 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 90.43 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 90.0 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 89.38 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 89.01 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 88.59 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 88.34 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 85.06 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 84.95 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 84.73 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 83.68 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 82.58 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=347.63 Aligned_cols=407 Identities=21% Similarity=0.223 Sum_probs=310.1
Q ss_pred CcchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhh
Q 009617 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (531)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 178 (531)
.+..|.++++++++.+..+++...+++++|.+.+++|++..+. +++.++++++.+++++++|+++||+|||+++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l 239 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL 239 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3456777788888888999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC---
Q 009617 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG--- 255 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--- 255 (531)
++++++.++++++++++.++++|++.|++.++..+....+++|++|+++|++.++++.+++.+|.++++.++..+..
T Consensus 240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876654331
Q ss_pred ---------CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccch-----HHH--HHHHHH
Q 009617 256 ---------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERV-----SEV--MLDLTN 319 (531)
Q Consensus 256 ---------~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 319 (531)
...+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+.. ... ....+.
T Consensus 320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~ 399 (742)
T TIGR01299 320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399 (742)
T ss_pred chhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence 1247999999988888877777888999999999999999999988887655321 000 001111
Q ss_pred hc--------cCCCCC----------------ccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc---
Q 009617 320 AG--------QGSAEP----------------EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV--- 372 (531)
Q Consensus 320 ~~--------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 372 (531)
.. +..... ..+++++|+++..+..++..++++...+ +++.+..|.|.++...
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~ 478 (742)
T TIGR01299 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQAD 478 (742)
T ss_pred hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 00 000000 0135667877777777777666665554 4666677777653221
Q ss_pred ---------------------------------------CC---------------------------------------
Q 009617 373 ---------------------------------------GI--------------------------------------- 374 (531)
Q Consensus 373 ---------------------------------------g~--------------------------------------- 374 (531)
|+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 558 (742)
T TIGR01299 479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN 558 (742)
T ss_pred HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence 00
Q ss_pred -----------------------------C------------h-------hhHHHHHHHHhhhcCccHHHHHHhHHHHHH
Q 009617 375 -----------------------------E------------S-------DVAASALVGAANVFGRKNLLTFSFTGMAAS 406 (531)
Q Consensus 375 -----------------------------~------------~-------~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~ 406 (531)
+ . ....++.+.++||+|||+++.++.++.+++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~ 638 (742)
T TIGR01299 559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS 638 (742)
T ss_pred cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0 0 012233344699999999999998888888
Q ss_pred HHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 407 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
.+++++.. +....++..++++++ ..+..+...++++|++|++.|++++|+.+++..+|++++|++++.+.+
T Consensus 639 ~ll~~~~~--------s~~~ll~~~~l~g~~-~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 639 CFFLSFGN--------SESAMIALLCLFGGL-SIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHc--------cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776531 112222223333333 333455677799999999999999999999999999999999998877
Q ss_pred hhccchhhHHHHHHHHHHHHHhheecccCCCCC
Q 009617 487 KFGISTVYLGFATVCLLAVLYIAVNVVETKGRS 519 (531)
Q Consensus 487 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (531)
. +...+|++.+++.++++++.+ ++||++++.
T Consensus 710 ~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 710 I-TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 5 445677777777767666555 458888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=321.01 Aligned_cols=428 Identities=32% Similarity=0.574 Sum_probs=352.0
Q ss_pred chhHHHHHHHHHHHHhhHhHHhhhhhHHHHHH--------hcC--CCcchh--HHHHHHHHHHHHHHHHHHhHHhhhhhc
Q 009617 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAK--------DLG--IAENTV--LQGWIVSSLLAGATVGSFTGGSLADKF 168 (531)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~--~s~~~~--~~~~~~s~~~~~~~i~~~~~g~l~dr~ 168 (531)
+........+++.+-.++..+..++..+.+.+ .+| .++++. .++.+.+++.+|.++|+++.|+++||+
T Consensus 8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~ 87 (485)
T KOG0569|consen 8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF 87 (485)
T ss_pred HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666668888888888776655443 345 444333 468889999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHHHHH---hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHH
Q 009617 169 GRTRTFQLDAVPLAAGAFLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILA 245 (531)
Q Consensus 169 Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 245 (531)
|||..+.++.++..++.++..+ .+++..++++|++.|+..|........++.|..|++.||......+.+..+|..+
T Consensus 88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll 167 (485)
T KOG0569|consen 88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL 167 (485)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence 9999999998888887776665 4789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc-cCCCCchhHHHHHHhHHHHHHHHHHhcccccchhHHHH-hCChHHHHHHHHHHhCccchHHHHHH---HHHh
Q 009617 246 ALVAGLP-LAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ-QGKKSEAEKSIQTLYGKERVSEVMLD---LTNA 320 (531)
Q Consensus 246 g~~~~~~-l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 320 (531)
+..++.. +..+...|++.+.+..+++++..+...++||+|+|+.. +++.+++++.++.+++.++.+++.++ ..++
T Consensus 168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~ 247 (485)
T KOG0569|consen 168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEE 247 (485)
T ss_pred HHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 9776644 33344679999999999999999999999999999988 78999999999999988765444433 3333
Q ss_pred ccCCCCCccchhhhhccc-hhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhh--------------HHHHHHH
Q 009617 321 GQGSAEPEAGWFDLFSSR-YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV--------------AASALVG 385 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------~~~~~~~ 385 (531)
++.+++++.+++++++++ ..+...+.+.+....++.+.+...+|...++.+.|++... .......
T Consensus 248 ~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~ 327 (485)
T KOG0569|consen 248 EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPF 327 (485)
T ss_pred hccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445778899999985 4555677778888899999999999999999999988762 2233334
Q ss_pred HhhhcCccHHHHHHhHHHHHHHHHHHHHhhccccc-CcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHH
Q 009617 386 AANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLA-PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 464 (531)
Q Consensus 386 ~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 464 (531)
+.||+|||+.++.+..++.+..+++.......... ....+..+.+.+++..+++.|.+|+.+.+.+|++|++.|+.+.+
T Consensus 328 lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 328 LIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 68999999999999999998888877655433322 11223346777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccCCCCCHHHHHHhhCC
Q 009617 465 LSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALNP 529 (531)
Q Consensus 465 ~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (531)
+...+..+..++-...+..+.+..|. ..|+.+.+.+++..+..++++||||+|+.+|+.+++++
T Consensus 408 ~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 408 VATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 99999999999999999999999995 88888999999999999999999999999999888764
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=328.16 Aligned_cols=419 Identities=33% Similarity=0.561 Sum_probs=308.9
Q ss_pred chhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhc--------CCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchh
Q 009617 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL--------GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR 172 (531)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 172 (531)
....++.+++++.+.++++...+++..|.+++++ +.+..+. +++.+++.++..++++++|+++||+|||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr~ 86 (479)
T PRK10077 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRRD 86 (479)
T ss_pred HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3455666777888999999999999999999988 7787888 99999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHh------------chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHH
Q 009617 173 TFQLDAVPLAAGAFLCATA------------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFIC 240 (531)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 240 (531)
+++++.++++++.++++++ ++++.+++.|+++|++.|...+...++++|++|+++|++++++.+.+..
T Consensus 87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence 9999999999998888763 2356788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCC-------CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHH
Q 009617 241 VGILAALVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEV 313 (531)
Q Consensus 241 ~G~~~g~~~~~~l~~-------~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (531)
+|.++++++++.+.. ...|||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++..+.++....
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence 999998887664431 2368999999988888777666777899999887777766666555555433322222
Q ss_pred HHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh--------------hH
Q 009617 314 MLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--------------VA 379 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------------~~ 379 (531)
..+.++....+... .+..+. ..............+....++....++.|.+.+..|.+.. ..
T Consensus 247 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~ 322 (479)
T PRK10077 247 LQEIKHSLDHGRKT---GGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTF 322 (479)
T ss_pred HHHHHHHHHHhhhh---hhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 22211111000000 011111 1111222222223333444455667788888888777543 11
Q ss_pred HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhh
Q 009617 380 ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR 459 (531)
Q Consensus 380 ~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 459 (531)
....+.++||+|||+.++.+.++++++.+++...... ...........+++..++.....|..+.++.|.+|++.|
T Consensus 323 ~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 398 (479)
T PRK10077 323 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 398 (479)
T ss_pred HHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHH
Confidence 2223346899999999999998888888777643211 111223333444555555555567777899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHH------HhhccchhhHHHHHHHHHHHHHhheecccCCCCCHHHHHHhhCC
Q 009617 460 AKAVALSLGMHWISNFVIGLYFLSVV------NKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALNP 529 (531)
Q Consensus 460 ~~~~g~~~~~~~~g~~i~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (531)
++++|+.+.++.++.++++.+.+.+. +..++...|.+++++++++.++.+++.+|+|+++.+|.++++++
T Consensus 399 ~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 399 GKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence 99999999999999999987776544 46777788888888888888877888899999999998888765
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=331.31 Aligned_cols=419 Identities=21% Similarity=0.275 Sum_probs=298.3
Q ss_pred CcchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhc-----CCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhh
Q 009617 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-----GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173 (531)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 173 (531)
.+..+.++.+++++.+.++++....+.+.|.+.+++ +.+..+. +++.+.+.+++.++++++|+++||+|||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~ 88 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVS--AAVNGSASIGTLAGQLFFGWLADKLGRKRV 88 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 344566777888899999999999999999888753 2334455 899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhch------HHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHH
Q 009617 174 FQLDAVPLAAGAFLCATAQS------VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (531)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 247 (531)
+.++++++.++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|.++++
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876 788999999999999999999999999999999999999999999999999888
Q ss_pred HhhcccCC----------------------CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChH-HHHHHHHHH
Q 009617 248 VAGLPLAG----------------------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKS-EAEKSIQTL 304 (531)
Q Consensus 248 ~~~~~l~~----------------------~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~ 304 (531)
.++..+.. ...+||+.|.+.++++++..+..+++||+|+|+..+++++ ++.+.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~ 248 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV 248 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence 88764321 1147999999888888877777788999999998877764 355555544
Q ss_pred hCccchHHHHHHHHHhccCCCCCccchhhhhccc---hhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh----
Q 009617 305 YGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR---YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD---- 377 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---- 377 (531)
...+..++ .++.++.+++++..+.+++++++++ ..++..+......+.....++....+.|.++++.|++..
T Consensus 249 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~ 327 (502)
T TIGR00887 249 LQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATN 327 (502)
T ss_pred hccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccch
Confidence 33211111 0000000001111223577777632 121222222222222222234445567777777776421
Q ss_pred --------------h--------HHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHH
Q 009617 378 --------------V--------AASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYV 435 (531)
Q Consensus 378 --------------~--------~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (531)
. .....+.++||+|||+.++.+.++.+++.+++....... .....+...+++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~ 402 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL-----STHGFLAIYVLAQ 402 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHH
Confidence 0 112234479999999998888877777766665432100 0111122222222
Q ss_pred HHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh----------ccchhhHHHHHHHHHHH
Q 009617 436 LSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF----------GISTVYLGFATVCLLAV 505 (531)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~----------g~~~~~~~~~~~~~~~~ 505 (531)
..+..+..+..+.+..|.+|++.|+++.|+.+.++.++++++|.+.+.+.+.. ++...|.+++++++++.
T Consensus 403 ~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (502)
T TIGR00887 403 FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGI 482 (502)
T ss_pred HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHH
Confidence 33345566777778899999999999999999999999999999999998843 34567788887777776
Q ss_pred HHhheecccCCCCCHHHHHHh
Q 009617 506 LYIAVNVVETKGRSLEEIERA 526 (531)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~ 526 (531)
++ ++++||++++++||+++|
T Consensus 483 i~-~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 483 LF-TLLIPETKGKSLEELSGE 502 (502)
T ss_pred HH-heEeccCCCCCHHhhhCC
Confidence 54 467799999999887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=315.95 Aligned_cols=418 Identities=36% Similarity=0.655 Sum_probs=306.1
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCC--------cchhHHHHHHHHHHHHHHHHHHhHHhhhhhccch
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA--------ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT 171 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr 171 (531)
++.+...+++.+..+...++...+++..+.+..+++.+ ..+. +++.+++.++..++++++|+++||+|||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW--GLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH--HHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 44455556666677788888888999999999998887 6667 9999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhc---hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHH
Q 009617 172 RTFQLDAVPLAAGAFLCATAQ---SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALV 248 (531)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 248 (531)
++++++.+++.++.+++.+.. +++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|.+++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999886643 45589999999999999999999999999999999999999999999999999999
Q ss_pred hh---cccCCCCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHH------HHHH
Q 009617 249 AG---LPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVML------DLTN 319 (531)
Q Consensus 249 ~~---~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 319 (531)
++ ..... ..+||+.|++.++..++..+..+++||+|++...+++.++..+..++............ +...
T Consensus 182 ~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 182 FGSGKVSLNN-TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred HHHHhhcCCC-CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 98 66543 37999999997777777666777789999877666665554444443322211111100 0000
Q ss_pred hccCCCCCccchhhhhccc--hhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh--------------hHHHHH
Q 009617 320 AGQGSAEPEAGWFDLFSSR--YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--------------VAASAL 383 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~ 383 (531)
..+ .+..+..++++++.. ..+...+...+..+..........++.+++.++.|++.. ....+.
T Consensus 261 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (481)
T TIGR00879 261 SIE-KRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVA 339 (481)
T ss_pred HHH-HhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 000 011111244444322 223334444444444444455667788888888887663 122223
Q ss_pred HHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhccccc--CcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhH
Q 009617 384 VGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLA--PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 461 (531)
Q Consensus 384 ~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 461 (531)
+.+.||+|||+.+..+.++.+++++++.+........ .......+....++..+++.+..+....++.|.+|++.|++
T Consensus 340 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (481)
T TIGR00879 340 IFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK 419 (481)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHH
Confidence 4468999999999888877777777665322111100 00133334444555556666667777778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccCCCCCHH
Q 009617 462 AVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 521 (531)
Q Consensus 462 ~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (531)
++|+.+...+++++++|.+.+.+.+..++...|++.+++++++.++.+++.+|+++++.+
T Consensus 420 ~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 420 GISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 999999999999999999999999999999999999999888888888888888877654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=310.04 Aligned_cols=427 Identities=39% Similarity=0.673 Sum_probs=343.9
Q ss_pred hHHHHHHHHHHHHhhHh--HHhhhhhHHHHHHhcCCCcch-----hHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhh
Q 009617 103 LPFVGVACLGAILFGYH--LGVVNGALEYLAKDLGIAENT-----VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~s~~~-----~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 175 (531)
........+..+..+++ .+..+++...+.++...+... ...+++.+.+.++..++++++|+++|++|||+.++
T Consensus 44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~ 123 (513)
T KOG0254|consen 44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL 123 (513)
T ss_pred HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444555556666665 556667777777754322211 12289999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
++.+++.++.+++++++|+++++++|++.|+|.|........+++|..|++.||...+..+....+|..++.+++....+
T Consensus 124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~ 203 (513)
T KOG0254|consen 124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK 203 (513)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777776653
Q ss_pred CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhC--ccchHHHHHHHHHhc--cC-CCCCccc
Q 009617 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYG--KERVSEVMLDLTNAG--QG-SAEPEAG 330 (531)
Q Consensus 256 ~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~ 330 (531)
...+||..+.+..+.+++..+..+++||+|+|+.++++.+++++.+.++.+ +.+...+..+.+.+. +. ..+.+..
T Consensus 204 ~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
T KOG0254|consen 204 VYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKAS 283 (513)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccccc
Confidence 224899999999999988888888899999999999999999999999887 334443333333111 11 1122225
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh-------------hHHHHHHHHhhhcCccHHHH
Q 009617 331 WFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD-------------VAASALVGAANVFGRKNLLT 397 (531)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~~~~gr~~~~~ 397 (531)
+.+++++...+...++..+..++++++++...+|.+.+++..|.... ........+.||+|||+.++
T Consensus 284 ~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll 363 (513)
T KOG0254|consen 284 WGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLL 363 (513)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 77778777888888899999999999999999999999999988753 12222235689999999999
Q ss_pred HHhHHHHHHHHHHHHHhhcccc----cCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHH
Q 009617 398 FSFTGMAASMLLLSLSFTWKVL----APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWIS 473 (531)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 473 (531)
.+...+.++.++++........ .....+..+...+++...+..++.++.+.+.+|.+|.+.|+.+.++...+..+.
T Consensus 364 ~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~ 443 (513)
T KOG0254|consen 364 FGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW 443 (513)
T ss_pred HhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence 9999999999998876554332 223456677777888888899999999999999999999999999999999998
Q ss_pred HHHHHHhhHHHHHhhccchhhHHHHHHHHHHHH-HhheecccCCCCCHHHHHHhhCC
Q 009617 474 NFVIGLYFLSVVNKFGISTVYLGFATVCLLAVL-YIAVNVVETKGRSLEEIERALNP 529 (531)
Q Consensus 474 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 529 (531)
..+-...+..+.+..+....|..+++++.+... ..+.+.||+|+++++++++.+++
T Consensus 444 ~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 444 NFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 888777766666655545677777777777777 78899999999999999987764
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=284.80 Aligned_cols=394 Identities=15% Similarity=0.101 Sum_probs=285.9
Q ss_pred ccccCcchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhh
Q 009617 95 AKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174 (531)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~ 174 (531)
.+..++.++.++..+++++...++.+..++.+.|.+.++.++|.+|. |++.+++.+.|.++.++.|.++||.++|+.+
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm 97 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFM 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceee
Confidence 44556677889999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhh--cc
Q 009617 175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LP 252 (531)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~ 252 (531)
.+++++.++.+++++++++.+.+.+..++.|+.+|..+|++...++.|++++|||+..++++++-++|..+.|++. +.
T Consensus 98 ~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~ 177 (448)
T COG2271 98 AFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF 177 (448)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888888 66
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccC--CCCCcc
Q 009617 253 LAGNPLWWRTMFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQG--SAEPEA 329 (531)
Q Consensus 253 l~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 329 (531)
+..+ .+||..|++.++++++..+.. +..+|+|+..-.+.-+ +..++.... + +++++. ....+.
T Consensus 178 ~~~~-~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie--------~~~~d~~e~----~-~~~~~~~~ls~~~i 243 (448)
T COG2271 178 FAFH-GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIE--------EYRGDPLEI----Y-EEEKENEGLTAWQI 243 (448)
T ss_pred HHhc-cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHH--------HhhcCchhh----h-hhhccCCCccHHHH
Confidence 6644 699999999999997665544 4568887632111110 000000000 0 000000 001112
Q ss_pred chhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChh--------------hHHHHHHHHhhhc--Cc
Q 009617 330 GWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESD--------------VAASALVGAANVF--GR 392 (531)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~--------------~~~~~~~~~~~~~--gr 392 (531)
-++-++++|..|.+.++..+... . =+.+..|.|.++ +..|++.. ...++.++++||+ ||
T Consensus 244 ~~~YVL~Nk~iW~la~a~vfvYi---v-R~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr 319 (448)
T COG2271 244 FVKYVLKNKLIWLLALANVFVYV---V-RYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR 319 (448)
T ss_pred HHHHHHcChHHHHHHHHHHHHHH---H-HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc
Confidence 23345666666655554433333 2 244555555554 44566554 4556667789997 56
Q ss_pred cHHHHH-HhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHH
Q 009617 393 KNLLTF-SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHW 471 (531)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 471 (531)
|.+..+ .++...++++.+.. .+..........+...+++-.+...+......|+.|++..|++.|+...+++
T Consensus 320 R~p~~~i~~~~i~~~~~~~w~-------~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Y 392 (448)
T COG2271 320 RGPMALIFMLLITASLVLYWL-------APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAY 392 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHc-------CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHH
Confidence 655443 33333333333322 1112222333222333333333344455567899999999999999999999
Q ss_pred H-HHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccC
Q 009617 472 I-SNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVET 515 (531)
Q Consensus 472 ~-g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (531)
+ |.+.+....|.+.|..||...|.++.+.++++.++.....+..
T Consensus 393 l~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~~ 437 (448)
T COG2271 393 LIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNAE 437 (448)
T ss_pred HhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 9 8888999999999999999999998888888777665554433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=297.43 Aligned_cols=384 Identities=16% Similarity=0.208 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchh---HHHH-HHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTV---LQGW-IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~-~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (531)
++...+++.+.+++|...++...|.+.++++.+.++. ...+ +.++.++++.++++++|+++||+|||+++.+++++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5566778899999999999999999999997554331 0111 25788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHH--------HHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcc
Q 009617 181 LAAGAFLCATAQSVQT--------MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (531)
Q Consensus 181 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 252 (531)
++++++++++++|++. +++.|+++|++.|+.++....+++|++|+++||++.++...+..+|.++|+.+...
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 88999999999999999999999999999999999999998888888887765543
Q ss_pred cC----C---CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCC
Q 009617 253 LA----G---NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSA 325 (531)
Q Consensus 253 l~----~---~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (531)
+. + ...|||+.|++.++++++..++...+||+|++...+++.++..+ +...+
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------~~~~~ 235 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------EGLQD 235 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------ccccc
Confidence 22 1 13799999999877666555555678999886532211110000 00001
Q ss_pred CCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhH--------------HHHHHHHhhhc
Q 009617 326 EPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--------------ASALVGAANVF 390 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--------------~~~~~~~~~~~ 390 (531)
.++.++++++++ .++.........++.. ..++....|.|.++ +..|++.... ....+.++||+
T Consensus 236 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 313 (490)
T PRK10642 236 GPKVSFKEIATK-HWRSLLTCIGLVIATN-VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF 313 (490)
T ss_pred cccCCHHHHHHH-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123346666654 2333333332222222 23444555666665 4457665311 11234468999
Q ss_pred CccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHH
Q 009617 391 GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMH 470 (531)
Q Consensus 391 gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 470 (531)
|||+.+..+.++..++...+.... ...+....++..++.+.+.+.... ....+..|.+|++.|++++|+.+.+.
T Consensus 314 grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~ 387 (490)
T PRK10642 314 GRRPFVILGSVALFVLAIPAFILI-----NSNVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNIS 387 (490)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHH
Confidence 999988777654333322211110 011122222222333332222222 33346778999999999999877777
Q ss_pred HHHHHHHHHhhHHHHHhhc-cchhhHHHHHHHHHHHHHhheecccCCCC
Q 009617 471 WISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLYIAVNVVETKGR 518 (531)
Q Consensus 471 ~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (531)
.+++.++|.+.+.+.+..+ +..++....+.++++.+..+ +.||++++
T Consensus 388 ~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~ 435 (490)
T PRK10642 388 VLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCC
Confidence 8888999999999988655 45555555555555444433 44776543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=308.34 Aligned_cols=377 Identities=21% Similarity=0.284 Sum_probs=277.4
Q ss_pred hhHHHHHHhcCCC---cchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHH
Q 009617 125 GALEYLAKDLGIA---ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR 201 (531)
Q Consensus 125 ~~~~~i~~~~~~s---~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 201 (531)
+..+.+.+|+|++ ..+. +++.+++.+++.++++++|+++||+|||++++++.++.+++.+++++++|++.+++.|
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5678899999998 7777 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhccc
Q 009617 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (531)
Q Consensus 202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 281 (531)
++.|++.+...+....++.|++|+++|+++.++...+..+|.++++++++.+. +||+.|++.+++.++..+..+++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987664 39999999999888777777889
Q ss_pred ccchhHHHHhCChHHHHHHHHHHhCccchH--HHHHHHH-HhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhH
Q 009617 282 PESPRWLFQQGKKSEAEKSIQTLYGKERVS--EVMLDLT-NAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGI 358 (531)
Q Consensus 282 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (531)
||+|+|+..+++.+++.+.+++..+.+... .+..+.. ++...+.+++.+++++++++..+...+......+.....+
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888777766554322111 1111110 1111111224578888988776665555443333222222
Q ss_pred HHHHHhHHHHHHHcCCCh-----------hhHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHH
Q 009617 359 NAVVYYSTSVFRSVGIES-----------DVAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLA 427 (531)
Q Consensus 359 ~~~~~~~~~~~~~~g~~~-----------~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (531)
+....+ ....+.+. .......+.+.||+|||+.+.++.++.+++.+++.+.. .......
T Consensus 344 ~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~------~~~~~~~ 413 (505)
T TIGR00898 344 YGLVLD----LGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP------VDLYFLR 413 (505)
T ss_pred HHHhcc----ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC------CCchHHH
Confidence 222222 22222221 12334445579999999999998888887777665431 1111222
Q ss_pred HHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHH
Q 009617 428 VLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLY 507 (531)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 507 (531)
+...++..++. ....+..+.+..|.+|++.|++++|+.+++..+|++++|.+.+ + +..++..++.+++++.+++.++
T Consensus 414 ~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 414 TALAVLGKFGI-TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH
Confidence 22222222222 2234455668899999999999999999999999999999998 3 4456667788877777777665
Q ss_pred hheecccCCCCCHH
Q 009617 508 IAVNVVETKGRSLE 521 (531)
Q Consensus 508 ~~~~~~~~~~~~~~ 521 (531)
.+ +++|+++++++
T Consensus 491 ~~-~lpet~~~~l~ 503 (505)
T TIGR00898 491 TL-FLPETKGVPLP 503 (505)
T ss_pred HH-cCcCCCCCCCC
Confidence 44 56888887654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=286.78 Aligned_cols=380 Identities=13% Similarity=0.096 Sum_probs=255.5
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
.|.++..+++..+.+++++...+...|.+++|+|++..+. |++.+++.+++.+++++.|+++||+|||+++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 4567777788888999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC-----C
Q 009617 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-----N 256 (531)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-----~ 256 (531)
+++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|.++++++++.+.+ .
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887653 2
Q ss_pred CchhHHHHHHhHHHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhh
Q 009617 257 PLWWRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335 (531)
Q Consensus 257 ~~gwr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (531)
..|||+.|++.++++++..+ ..+++||+|+.... -.+++.+...+.........++. + +...+.....+..+++++
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 240 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQP-E-GAFAHAAMPQRSMLREIF 240 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhcccccccc-c-cccccccccHHHHHHHhc
Confidence 35899999999888865444 44567888752100 00111111101110000000000 0 000000000011233444
Q ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc--CCChhh--------------HHHHHHHHhhhcCccHHH-HH
Q 009617 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV--GIESDV--------------AASALVGAANVFGRKNLL-TF 398 (531)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--------------~~~~~~~~~~~~gr~~~~-~~ 398 (531)
+ +..+... ...+.....+..+..|.|.++++. +++... .....+.++||+++|+.. ..
T Consensus 241 ~-~~~~~~~----~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~ 315 (412)
T TIGR02332 241 T-PAIMLYT----LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTAL 315 (412)
T ss_pred C-hHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHH
Confidence 3 2222222 222222233555667777777764 444331 123334468999977753 33
Q ss_pred HhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHH
Q 009617 399 SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIG 478 (531)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 478 (531)
..+...++. ++... .. .....+....+...+.. ...+.......|.+|++.|++++|+.+..+++|++++|
T Consensus 316 ~~~~~~~~~-~~~~~------~~-~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p 386 (412)
T TIGR02332 316 PYLFAAAGW-LLASA------TD-HNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSP 386 (412)
T ss_pred HHHHHHHHH-HHHHh------cC-CHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhh
Confidence 333333332 22111 01 11111222222222221 12233344556789999999999999999999999999
Q ss_pred HhhHHHHHhhc-cchhhHHHHHH
Q 009617 479 LYFLSVVNKFG-ISTVYLGFATV 500 (531)
Q Consensus 479 ~~~g~~~~~~g-~~~~~~~~~~~ 500 (531)
.+.|.+.+..| |...+.+.+++
T Consensus 387 ~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 387 FLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhcccccccCCCCchhHHHHHHH
Confidence 99999999875 77777765554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=337.71 Aligned_cols=418 Identities=35% Similarity=0.600 Sum_probs=326.3
Q ss_pred HHHHHHhhHhHHhhhhhHHHHH--HhcCCCcch-------hHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHH
Q 009617 110 CLGAILFGYHLGVVNGALEYLA--KDLGIAENT-------VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (531)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~s~~~-------~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (531)
.++.+..+++...++...+... .+++.+... ...+++.+...+|..+|++++|.++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4455788888888777666555 233322221 2348999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC-
Q 009617 181 LAAGAFLCATAQ---SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN- 256 (531)
Q Consensus 181 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~- 256 (531)
..++.++.++++ +++.++++|++.|++.|...+....++.|..|++.|++..++.+.+..+|.+++..++..+...
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 9999999999999999999999999999999999999999999999999999988887666422
Q ss_pred -CchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhh
Q 009617 257 -PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335 (531)
Q Consensus 257 -~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (531)
..+||+.+++.++++++..+..+++||+|+|+..+++.+++++.+++.++.+..+++..+..++.++.++++.++++++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF 245 (451)
T ss_pred ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 1359999999999998877788889999999999999999998888866554444444444444443433346788888
Q ss_pred ccch-hHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh------------hHHHHHHHHhhhcCccHHHHHHhHH
Q 009617 336 SSRY-WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD------------VAASALVGAANVFGRKNLLTFSFTG 402 (531)
Q Consensus 336 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~~gr~~~~~~~~~~ 402 (531)
+++. .+.+.+...+.....+.++....+|.+.+.+..+.+.. ........+.||+|||+.++.+..+
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~ 325 (451)
T PF00083_consen 246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLL 325 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8754 45555666666666666667777888888877766655 1111222458999999999998888
Q ss_pred HHHHHHHHH-HHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhh
Q 009617 403 MAASMLLLS-LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYF 481 (531)
Q Consensus 403 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 481 (531)
++++.+.+. ................+....++..++..++.+..+.+..|.+|++.|+++.|+...++.+++++++.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~ 405 (451)
T PF00083_consen 326 MAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLF 405 (451)
T ss_pred ccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 887777765 1111111000112333444444555666678888888999999999999999999999999999999999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHhheecccCCCCCHHHHHHhh
Q 009617 482 LSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERAL 527 (531)
Q Consensus 482 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (531)
..+.+..+....+.++++++++..++.+++.||||+++++|+++++
T Consensus 406 ~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 406 PYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 8888887766788888888888888899999999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=295.72 Aligned_cols=387 Identities=12% Similarity=0.039 Sum_probs=260.8
Q ss_pred CcchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhh
Q 009617 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (531)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 178 (531)
.+..+.++..+++.++..++++..+++..|.+.+|+|++..+. |++.+++.+++.++++++|+++||+|||+++.+++
T Consensus 24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~ 101 (467)
T PRK09556 24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLL 101 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHH
Confidence 3445667778888888899999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-----hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhccc
Q 009617 179 VPLAAGAFLCAT-----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (531)
Q Consensus 179 ~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 253 (531)
++++++.++.++ +++++.+++.|+++|++.+...+....+++||+|+++||++++++..+.++|.++++++...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 102 ILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence 888888776665 589999999999999999999999999999999999999999999999999999998887655
Q ss_pred CCC--CchhHHHHHHhHHHHHHHHHHhc-ccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccc
Q 009617 254 AGN--PLWWRTMFGLAAIPSILLALGMG-LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAG 330 (531)
Q Consensus 254 ~~~--~~gwr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (531)
... ..+||..|.+.++++++..+..+ +.+++|+..... ++ ++. . .+. ...+ + +..++++......
T Consensus 182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~---~~-~~~---~-~~~-~~~~--~-~~~~~~~~~~~~~ 249 (467)
T PRK09556 182 ANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG---KA-EEI---F-GEP-ISEE--D-KETESTDMTKWQI 249 (467)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC---Ch-hhc---c-cCc-cchh--h-hccccccCcHHHH
Confidence 432 13699999988888766554443 456665421100 00 000 0 000 0000 0 0000000000011
Q ss_pred h-hhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhH--------------HHHHHHHhhhcCccH
Q 009617 331 W-FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--------------ASALVGAANVFGRKN 394 (531)
Q Consensus 331 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--------------~~~~~~~~~~~gr~~ 394 (531)
+ +..++++..+...+...+. .. .+.....|.|.++ +..|++.... ....+.++||++||+
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~ 325 (467)
T PRK09556 250 FVEYVLKNPVIWLLCFANIFL---YI-VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR 325 (467)
T ss_pred HHHHHHcChHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 1 2255665554443332222 22 2334556666555 5578776432 223344689999988
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHH-H
Q 009617 395 LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWI-S 473 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g 473 (531)
.......+..++..++.... ..+.....+..++++.+ ..+..........|.+|++.+|++.|+.+.++++ |
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g 398 (467)
T PRK09556 326 ALVACIALALIIFTLGVYQH------ATSEYMYLASLFALGFL-VFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFG 398 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHHH-HhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHh
Confidence 76654443333322222110 11222222222222221 1122212223566999999999999999999997 7
Q ss_pred HHHHHHhhHHHHH------------hhccchhhHHHHHHHHHHHHHhhe
Q 009617 474 NFVIGLYFLSVVN------------KFGISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 474 ~~i~~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 510 (531)
++++|.+.|.+.| ..||...|.+++++++++.++.+.
T Consensus 399 ~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 399 DSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999 567888998887777777665543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=264.30 Aligned_cols=361 Identities=19% Similarity=0.172 Sum_probs=275.3
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
+..++.+.++.|..+........++|++.+|+|+|..+. |++.+.|.+++.++.++...+.||+.||++++..+.++.
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 556667788888888888899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~ 262 (531)
++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|..+|.++.+. .|||+
T Consensus 90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~-~GWR~ 168 (394)
T COG2814 90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-FGWRA 168 (394)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-hhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865 89999
Q ss_pred HHHHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhH
Q 009617 263 MFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
+|++.+.++++..+.. ..+| |+... +.+.. +..+..+.+|++..+
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP--~~~~~-~~~~~-------------------------------~~~~~~~~l~~p~v~ 214 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP--PSEIS-GSLPG-------------------------------PLRTLLRLLRRPGVL 214 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CccCC-CCCCc-------------------------------chhHHHHHhcCchHH
Confidence 9999999997766544 4567 21000 00000 011123445555544
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHH
Q 009617 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASM 407 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~ 407 (531)
..++...+.+. ..+..++|..|++.+..|++.... ....+.+.|| +.++.+.....+.++.+
T Consensus 215 ~~l~~t~l~~~---g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~ 290 (394)
T COG2814 215 LGLLATFLFMT---GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL 290 (394)
T ss_pred HHHHHHHHHHc---chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHH
Confidence 44444333333 335666777888888888776532 2223345888 88888888877777777
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009617 408 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 487 (531)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 487 (531)
+.+.+.. .+.+..+....++++....... .......+.. ++.+..+.+++....++|..+|..++|.++|+
T Consensus 291 l~l~~~~-------~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~ 361 (394)
T COG2814 291 LALTFTG-------ASPALALALLFLWGFAFSPALQ-GLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA 361 (394)
T ss_pred HHHHHhc-------chHHHHHHHHHHHHHHhhhhhh-HHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7765531 1222233333332222222111 1222344433 47899999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHhheecc
Q 009617 488 FGISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 488 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
.|+....++.+.+.+++.++.+...+
T Consensus 362 ~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 362 LGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988888888887776655443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=282.27 Aligned_cols=381 Identities=17% Similarity=0.197 Sum_probs=264.8
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
.+..+..+++..+.++++.....+..|.+++++|+++.+. +++.+++.+++.++++++|+++||+|||+++..+.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3445667788888899999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhH
Q 009617 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (531)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr 261 (531)
+++.++++++++++.++++|+++|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+.+.+. .+||
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~-~~w~ 172 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA-YGWR 172 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-CCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888877744 7999
Q ss_pred HHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhH
Q 009617 262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (531)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
+.|++..+..++........||++++...+.+. +++ +.+...+..+..++++++++..+
T Consensus 173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 231 (426)
T PRK12307 173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGK---------HSQSAWSVFSLSMKGLFNRAQFP 231 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------ccc---------ccccchhhhhHHHHHHHhhchHH
Confidence 999875544333332222345554322111000 000 00000001122456777776655
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHH
Q 009617 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASM 407 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~ 407 (531)
.........+.. +........+.|.++++.|.+.... ....+.+.||++||+....+.++..+..
T Consensus 232 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 310 (426)
T PRK12307 232 LTLCVFIVLFSI-FGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFI 310 (426)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 444333322221 2222334456666666677765422 2223446899999998887776665554
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHH-hcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 408 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSF-SLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
+.+.... . ... .....++++.++ ..+..+....++.|.+|++.||+++|+.+.+..+++.++|.+.|.+.+
T Consensus 311 ~~~~~~~------~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 311 FPLFRIP------Q-DNY-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHHHHHc------c-ccH-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 4433210 0 111 222222332222 222333444577899999999999999999999999999999999999
Q ss_pred hhccchh-hHHHHHHHHHHHHHhheecccC
Q 009617 487 KFGISTV-YLGFATVCLLAVLYIAVNVVET 515 (531)
Q Consensus 487 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 515 (531)
..|+... +.+.++.+.++........+++
T Consensus 383 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 383 TMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 8886543 3333333334333333334443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=286.46 Aligned_cols=384 Identities=14% Similarity=0.123 Sum_probs=261.6
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
+.++...++..+...++...+++.+|.+.+++|++..+. |++.+++.+++.+++++.|+++||+|||+++.++.++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 22 RHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 445556677777778888888889999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~ 262 (531)
++.++++++++++.+++.|++.|++.|..++....++.|++|+++|++++++++.+..+|.++++++++.+.+. .|||+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~ 178 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-YGWRY 178 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888754 79999
Q ss_pred HHHHhHHHHHHHH-HHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhh-----hhc
Q 009617 263 MFGLAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFD-----LFS 336 (531)
Q Consensus 263 ~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 336 (531)
.|++.+++.++.. +..++++|+|++...+...+...+ .. +..+ +.++++.++++ .++
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------~~----~~~~---~~~~~~~~~~~~~~~~~~~ 241 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD----------AL----ELAQ---QQEGAGLSRKEILTKYVLL 241 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc----------cc----ccch---hccccCCChhhhHHHHHhc
Confidence 9999888775443 344456877653211110000000 00 0000 00001112222 344
Q ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhH--------------HHHHHHHhhhc--CccHHH-HH
Q 009617 337 SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--------------ASALVGAANVF--GRKNLL-TF 398 (531)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--------------~~~~~~~~~~~--gr~~~~-~~ 398 (531)
++..+........... .+..+..|.|.++ ++.|++.... ....+.++||+ ++|+.. ..
T Consensus 242 ~~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~ 317 (434)
T PRK11663 242 NPYIWLLSFSYVLVYV----VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLI 317 (434)
T ss_pred ChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHH
Confidence 4444433332222211 2334445656555 5567765432 22233458998 333332 22
Q ss_pred HhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHH-hcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHH
Q 009617 399 SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSF-SLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVI 477 (531)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 477 (531)
..+...+....+.... ..+...... .++..++ ..+..........|.+|++.|++++|+.++..++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 389 (434)
T PRK11663 318 FAAGILLSVGSLWLMP------FASYVMQAA--CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALS 389 (434)
T ss_pred HHHHHHHHHHHHHHcc------cccHHHHHH--HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHh
Confidence 2222222222211110 001111111 1222222 111222223466899999999999999999999999999
Q ss_pred HHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccCCCC
Q 009617 478 GLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 518 (531)
Q Consensus 478 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (531)
|.+.|.+.+..|+...|.+.+++++++++..+...++++++
T Consensus 390 p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 390 GYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred cccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999999999999999888888777666555554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=281.60 Aligned_cols=365 Identities=21% Similarity=0.262 Sum_probs=263.8
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhH
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 179 (531)
++.|.+++++++..+.++++....++..|.+.+++|.++.+. +++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 366778888889999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch
Q 009617 180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (531)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g 259 (531)
+.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+. .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~ 167 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD-AA 167 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777644 78
Q ss_pred hHHHHHHhHHHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccc
Q 009617 260 WRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSR 338 (531)
Q Consensus 260 wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (531)
||+.|++.+++.++..+ ...++||+|++...+.+.++.++ ..+.+++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~ 217 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP------------------------------VLRALFGEG 217 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh------------------------------hHHHHhhhh
Confidence 99999998876655443 44557888764322111110000 001111111
Q ss_pred ---hhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhh--------------HHHHHHHHhhhcCccHHHHHHhH
Q 009617 339 ---YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV--------------AASALVGAANVFGRKNLLTFSFT 401 (531)
Q Consensus 339 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------~~~~~~~~~~~~gr~~~~~~~~~ 401 (531)
.......... ...........+.|.+.++.|++... .....+.+.||+|||+.+..+.+
T Consensus 218 ~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 293 (406)
T PRK11551 218 RATATLLLWISYF----FTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYA 293 (406)
T ss_pred hhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1111111111 11122334455667777777776542 22233446899999998887666
Q ss_pred HHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhh
Q 009617 402 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYF 481 (531)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 481 (531)
..+++.+++... + +.....+..++.+.+. .+..+....+..|.+|++.|+++.|+.+.+..+|++++|.+.
T Consensus 294 ~~~~~~~~~~~~-------~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 294 GILASLAALAAA-------P-SFAGMLLAGFAAGLFV-VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred HHHHHHHHHHhc-------C-cHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 655555444331 1 1222222222222222 234455666889999999999999999999999999999999
Q ss_pred HHHHHhhc-cchhhHHHHHHHHHHHHHhhe
Q 009617 482 LSVVNKFG-ISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 482 g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 510 (531)
|.+.+..+ +...+.....+.+++.++.+.
T Consensus 365 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 365 GQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred hhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99998755 334444444444444444443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=278.74 Aligned_cols=367 Identities=17% Similarity=0.182 Sum_probs=237.6
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcC---CCcchh-HHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhh
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG---IAENTV-LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLD 177 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 177 (531)
++..+...+++.+.+++|...++...|.+.++++ .+..+. ..+.+.+..+++..++++++|+++||+|||+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445666678889999999999999999999995 444433 113334444555559999999999999999999999
Q ss_pred hHHHHHHHHHHHHhchHH--------HHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHh
Q 009617 178 AVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA 249 (531)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~ 249 (531)
+++++++++++++++++. .+++.|+++|++.|..++...++++|++|+++|+++.++.+.+...|.++++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 588999999999999999999999999999999999999988888888888776
Q ss_pred hcccCC-------CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhcc
Q 009617 250 GLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQ 322 (531)
Q Consensus 250 ~~~l~~-------~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (531)
...+.. ...|||++|++.+++.++.......+||++++..++ .
T Consensus 180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~------~------------------------ 229 (432)
T PRK10406 180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA------L------------------------ 229 (432)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh------h------------------------
Confidence 544321 137999999998887766655555567765421000 0
Q ss_pred CCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhH--------------HHHHHHHh
Q 009617 323 GSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--------------ASALVGAA 387 (531)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--------------~~~~~~~~ 387 (531)
+++.+++++++++..+...+... ..... .++....|.|.++ +..|++.... ....+.++
T Consensus 230 ---~~~~~~~~l~~~~~~~~~~~~~~--~~~~~-~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~ 303 (432)
T PRK10406 230 ---KEAGSLKGLWRNRRAFIMVLGFT--AAGSL-CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALS 303 (432)
T ss_pred ---cccccHHHHHhhHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123566666544333222221 11122 2333444555554 4567765321 12234469
Q ss_pred hhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHH
Q 009617 388 NVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL 467 (531)
Q Consensus 388 ~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 467 (531)
||++||+.+....++.++....+..... ...+....+....+.....+ ...+....+.+|.+|++.|++++|+.+
T Consensus 304 Dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp~~~r~t~~g~~~ 378 (432)
T PRK10406 304 DKIGRRTSMLCFGSLAALFTVPILSALQ----NVSSPYAAFGLVMCALLIVS-FYTSISGILKAEMFPAQVRALGVGLSY 378 (432)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCccchhhhHHH
Confidence 9999998877665543333322211110 00011111111111111111 122344557889999999999999999
Q ss_pred HHHHH-HHHHHHHhhHHHHHhhc-cchhhHHHHHHHHHHHHHhhe
Q 009617 468 GMHWI-SNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 468 ~~~~~-g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 510 (531)
.++++ .+...|.+.+. .+..| +...+...+++.+++.+..++
T Consensus 379 ~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 379 AVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 88775 34457777774 45556 444555555555555554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=275.48 Aligned_cols=345 Identities=12% Similarity=0.038 Sum_probs=239.9
Q ss_pred hhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHH
Q 009617 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ 195 (531)
Q Consensus 116 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 195 (531)
+......+++.+|.+++|+|++..+. |++.+.+.+++.+++++.|+++||+|||+++..++.....+.+.....+|++
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYE 80 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHH
Confidence 44556678899999999999999999 9999999999999999999999999999887665555545443333447999
Q ss_pred HHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHH
Q 009617 196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (531)
Q Consensus 196 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~ 275 (531)
.+++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++.+.+. .|||+.|++.++++++..
T Consensus 81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-GGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 999999999999985 556666779999999999999999999999999999999998854 799999999888876554
Q ss_pred H-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHH
Q 009617 276 L-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 354 (531)
Q Consensus 276 ~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (531)
+ ..+++||+|++. ++..+..+ ....++++++++..+...+..++...
T Consensus 159 ~~~~~~lp~~p~~~---~~~~~~~~---------------------------~~~~~~~ll~~~~~~~~~~~~~~~~~-- 206 (368)
T TIGR00903 159 ILVLAALPALPFQA---AEGFGFKD---------------------------AVKEFGALAGRKDLWIIGAILGFGVA-- 206 (368)
T ss_pred HHHHHHcCCCCCCC---CCCcchHH---------------------------HHHHHHHHHcChhHHHHHHHHHHHHH--
Confidence 4 445679887642 11000000 00124567777666555444333322
Q ss_pred hhhHHHHHHhHHHHHHHcCCChhhH----------HHHHHHHhhhcCcc---HHHH-HHhHHHHHHHHHHHHHhhccccc
Q 009617 355 LAGINAVVYYSTSVFRSVGIESDVA----------ASALVGAANVFGRK---NLLT-FSFTGMAASMLLLSLSFTWKVLA 420 (531)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~~~~~gr~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 420 (531)
.++.+..|.|.++++.|++.... ....+.++||..|| +... ...++.++....+...
T Consensus 207 --~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~------- 277 (368)
T TIGR00903 207 --LFDNLAIWLEAALRPAGLEDIAGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE------- 277 (368)
T ss_pred --HHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 34556678888888777765311 11112347777543 3222 2233333332222211
Q ss_pred CcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHH
Q 009617 421 PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATV 500 (531)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~ 500 (531)
. +....+....+.+ .+.....+..+++.+|.+|++.|+++.|+.+..++++++++|.+.+.+.. +....|.++++.
T Consensus 278 ~-~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~ 353 (368)
T TIGR00903 278 L-NRLALFAFIGIAG-LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAIL 353 (368)
T ss_pred c-ccHHHHHHHHHHH-HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 0 1122222222222 22223334566688999999999999999999999999999999988773 666778888887
Q ss_pred HHHHHHHhh
Q 009617 501 CLLAVLYIA 509 (531)
Q Consensus 501 ~~~~~~~~~ 509 (531)
.+++.+..+
T Consensus 354 ~~i~~~~~~ 362 (368)
T TIGR00903 354 ITIAFAIAL 362 (368)
T ss_pred HHHHHHHHH
Confidence 777776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=277.14 Aligned_cols=378 Identities=18% Similarity=0.215 Sum_probs=257.8
Q ss_pred CcchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhh
Q 009617 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (531)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 178 (531)
.++.|..+..++++.+.++++....++..|.+++++|.+..+. +++.+++.++..+++++.|+++||+|||++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3455777888899999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC-
Q 009617 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP- 257 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~- 257 (531)
++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988876431
Q ss_pred chhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhcc
Q 009617 258 LWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS 337 (531)
Q Consensus 258 ~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (531)
.+||+.|++.++..++..+....+||++++...++++++..+..++..+.++... . ..++.....++..+
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~- 234 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA------N---IVMTLAAAMVQSAG- 234 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh------h---hhhhhhHHhhhhhh-
Confidence 2599999887766666555556678876543222211111111111111000000 0 00000000111111
Q ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHH
Q 009617 338 RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGM 403 (531)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~ 403 (531)
+.+...........+..........++.+++.++.|++.... ....+.+.||+|||+.+..+.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence 111111111111222122112222233334444567665422 223345689999999888776554
Q ss_pred HHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 009617 404 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLS 483 (531)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 483 (531)
.+....+... ..+.....+..++.+. ...+..+....++.|.+|++.|++++|+.+.+.++++.++|++.|.
T Consensus 315 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~ 386 (405)
T TIGR00891 315 QLLIIPVFAI-------GANVAVLGLGLFFQQM-LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL 386 (405)
T ss_pred HHHHHHHHHh-------CCchHHHHHHHHHHHH-HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3322222111 0112222222222222 2233444555688999999999999999999999999999999999
Q ss_pred HHHhhc-cchhhHH
Q 009617 484 VVNKFG-ISTVYLG 496 (531)
Q Consensus 484 ~~~~~g-~~~~~~~ 496 (531)
+.+..| |...+..
T Consensus 387 l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 387 LAQRLDEYGTALAS 400 (405)
T ss_pred HHHhccccchhHHh
Confidence 999988 6655444
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=276.23 Aligned_cols=359 Identities=17% Similarity=0.125 Sum_probs=253.0
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
|..+..+.+..+..........+.+|.+.+++|.+..+. |++.+++.+++.++++++|+++||+|||+++..+.++++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 333444444444443444455667899999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~ 262 (531)
++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+.++|.++||++++.+.+. .|||+
T Consensus 86 ~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-~gw~~ 164 (390)
T PRK03545 86 ASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-LGWRT 164 (390)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-hcHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999988743 79999
Q ss_pred HHHHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhH
Q 009617 263 MFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
.|++.++++++..+.. .++||.++ + ++.+ ..+.++.++++..+
T Consensus 165 ~f~~~~~~~~l~~~~~~~~~~~~~~----~-~~~~-------------------------------~~~~~~~~~~~~~~ 208 (390)
T PRK03545 165 TFLAIGGGALITLLLLIKLLPLLPS----E-HSGS-------------------------------LKSLPLLFRRPALV 208 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC----C-Ccch-------------------------------HHHHHHHHhCcHHH
Confidence 9999998876654443 33565432 0 0000 00123455555544
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHH--------------HHHHHHhhhcCccHHHHHHhHHHHHHH
Q 009617 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA--------------SALVGAANVFGRKNLLTFSFTGMAASM 407 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~~~~~~~~~~~ 407 (531)
.......+.... .+....+..+++.+..|++....+ ...+.+.||+++|... .+..+..++.
T Consensus 209 ~~~~~~~~~~~~---~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 209 SLYLLTVVVVTA---HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHH
Confidence 433322222221 122233334444444566654222 2223358999887654 3333333333
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009617 408 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 487 (531)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 487 (531)
..+... ..+.+...+...+.+.+. ....+.....+.+..| +.+++++|+++...++|..+||.+.|.+.+.
T Consensus 285 ~~l~~~-------~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~ 355 (390)
T PRK03545 285 LLLLPA-------ANSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH 355 (390)
T ss_pred HHHHHH-------hchHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332221 012222333333333333 2333444456667766 6789999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHhheecc
Q 009617 488 FGISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 488 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
.|++..|...+++.+++.++.+...+
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 356 LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999998888887777665443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=249.01 Aligned_cols=404 Identities=19% Similarity=0.225 Sum_probs=308.9
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhH
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 179 (531)
+..|...+...+....+.+-......+.|.+.+.+|.+..+. .++....+.|..+++..||.++|++|||+.+.+..+
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 344566666677777777766666778899999999988888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch
Q 009617 180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (531)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g 259 (531)
..++..++.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.++...+......+ .|
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~-~g 228 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-FG 228 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-hh
Confidence 9999999999999999999999999999998 888888999999998888877776 88999999999998887755 79
Q ss_pred hHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchH------------HHHH---HH-HHhccC
Q 009617 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVS------------EVML---DL-TNAGQG 323 (531)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~---~~-~~~~~~ 323 (531)
|||.....+.+..+.+...+++||+|+++..++++.++.+.++++...|... +.++ +. +.+...
T Consensus 229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a 308 (528)
T KOG0253|consen 229 WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSA 308 (528)
T ss_pred HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcc
Confidence 9999999998888888888899999999999999999988888776543211 0000 01 111122
Q ss_pred CCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc---CCCh------------------------
Q 009617 324 SAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV---GIES------------------------ 376 (531)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~------------------------ 376 (531)
.++......+++.++..+..++....++...+..| ..+.....+++.. +..+
T Consensus 309 ~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyy-g~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdl 387 (528)
T KOG0253|consen 309 AKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYY-GSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDL 387 (528)
T ss_pred ccccccchHhhcChHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHH
Confidence 34445667788887777777666666665544433 3333333333221 1110
Q ss_pred -------hhHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccc
Q 009617 377 -------DVAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALL 449 (531)
Q Consensus 377 -------~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (531)
....++.+.+.||+|||+.+..++++.++..+++.... ......+..+..-.+.. +...+.+.|
T Consensus 388 litslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~--------~rn~~tvllf~arafis-g~fqvaYvY 458 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK--------TRNAYTVLLFTARAFIS-GAFQVAYVY 458 (528)
T ss_pred HHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHh-chheEEEEe
Confidence 02344556679999999999999999888888776542 22223333333333333 344467779
Q ss_pred cccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccCCCCCH
Q 009617 450 LPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSL 520 (531)
Q Consensus 450 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (531)
..|.+|+..|+++.|....+..+|+++.|.+. +........+..+++++++++.+...++.-|+|+|..
T Consensus 459 tPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 459 TPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred cCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999999999999999999999999999988 4444455677888888999998888888889998864
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=270.27 Aligned_cols=364 Identities=13% Similarity=0.098 Sum_probs=256.2
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
|.....++.+.+.... ....++++|.+++|+|+|..+. +++.+++.+++.+++++.|+++||+|||+++..++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~ 85 (393)
T PRK09705 9 FMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA 85 (393)
T ss_pred HHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence 4444444554444333 3567889999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~ 262 (531)
++.+++++++|++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++.+.+...+||+
T Consensus 86 ~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 86 VGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred HHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999997 6799999999999999999999999887755458999
Q ss_pred HHHHhHHHHHHHHHHhccc-ccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhH
Q 009617 263 MFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
.+.+.++..++..+..+.. ++.|+ ++ + + ++...++.++++..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~--------------------------~---~~~~~~~~l~~~~~~ 208 (393)
T PRK09705 165 TLAWWALPAVVALFAWWWQSAREVA-----SS--H--------------------------K---TTTTPVRVVFTPRAW 208 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc-----cc--c--------------------------C---CCcCCcccccCHhHH
Confidence 9877766654433333222 11111 00 0 0 000112233333333
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHH--------------HHHHhhhcCccHHHHHHhHHHHHHH
Q 009617 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASA--------------LVGAANVFGRKNLLTFSFTGMAASM 407 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~gr~~~~~~~~~~~~~~~ 407 (531)
...+...+. ...+.....+.|.++.+.|.+....+.. .+.+.||++||+....+..+..++.
T Consensus 209 ~l~~~~~~~----~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 209 TLGVYFGLI----NGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 322222111 2234455566666667778776533222 2335899999988888777666666
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCccccccccccccc-ChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 408 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIF-ASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
+++... +. +... ...++.+.+.+. ..+.......+.. |++.+++++|+.+.++++++.++|.+.|++.|
T Consensus 285 ~~~~~~------~~-~~~~--~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~ 354 (393)
T PRK09705 285 CGFIWL------PL-QLPV--LWAMVCGLGLGG-AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRS 354 (393)
T ss_pred HHHHHc------cc-hHHH--HHHHHHHHhccc-hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554321 11 1111 112223333332 2333333444555 46789999999999999999999999999999
Q ss_pred hhc-cchhhHHHHHHHHHHHHHhheecccCCCCCH
Q 009617 487 KFG-ISTVYLGFATVCLLAVLYIAVNVVETKGRSL 520 (531)
Q Consensus 487 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (531)
..| +...|.+.++++++..++.+.+.+|+++|.+
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 355 ISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 987 6677777777777777777777888776643
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=267.52 Aligned_cols=373 Identities=15% Similarity=0.147 Sum_probs=245.0
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHH-HHHhc--CCCcchhHHHHHH-----HHHHHHHHHHHHhHHhhhhhccchhhh
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEY-LAKDL--GIAENTVLQGWIV-----SSLLAGATVGSFTGGSLADKFGRTRTF 174 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~~~ 174 (531)
+.++...+++.+.+++|...++.+.|. +.+++ +.++. . +++. ++.++++.+++++.|+++||+|||+++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l 97 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-M--GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-H--HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 345667778889999999999888774 56666 66665 3 5443 355667789999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhchHH--------HHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHH
Q 009617 175 QLDAVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAA 246 (531)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 246 (531)
..++++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++..+....+..+|.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 588999999999999999999999999999999999999999999998888
Q ss_pred HHhhcccCC-------CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHH
Q 009617 247 LVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319 (531)
Q Consensus 247 ~~~~~~l~~-------~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (531)
..+...+.. ...|||+.|++.+++.++........||+|++...+++.++.
T Consensus 178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~---------------------- 235 (438)
T PRK09952 178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA---------------------- 235 (438)
T ss_pred HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc----------------------
Confidence 766654431 136899999988877655544444568877643221110000
Q ss_pred hccCCCCCccc-hhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHHcCCChhh--------------HHHHH
Q 009617 320 AGQGSAEPEAG-WFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FRSVGIESDV--------------AASAL 383 (531)
Q Consensus 320 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~--------------~~~~~ 383 (531)
+++.+ .+.+++++..+.... ...+...+. ++....+.+.+ .+..|++... .....
T Consensus 236 ------~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~ 306 (438)
T PRK09952 236 ------KKRIPVIEALLRHPGAFLKII--ALRLCELLT-MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCF 306 (438)
T ss_pred ------cccCCHHHHHHHchHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111 122333333222221 112222222 22333344443 3456665531 11123
Q ss_pred HHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHH
Q 009617 384 VGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 463 (531)
Q Consensus 384 ~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 463 (531)
+.++||+|||+.+..+.++..++.+.+..... ........+...++...+.+ ...+..+++..|.+|++.|+++.
T Consensus 307 g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~e~~p~~~r~tg~ 381 (438)
T PRK09952 307 AWLADRFGRRRVYITGALIGTLSAFPFFMALE----AQSIFWIVFFSIMLANIAHD-MVVCVQQPMFTEMFGASYRYSGA 381 (438)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCcchhHHHH
Confidence 45799999999888776655544433322110 01111112222222223322 22344566889999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhHHHHHhh--ccchhhHHHHHHHHHHHHHhheecccC
Q 009617 464 ALSLGMHW-ISNFVIGLYFLSVVNKF--GISTVYLGFATVCLLAVLYIAVNVVET 515 (531)
Q Consensus 464 g~~~~~~~-~g~~i~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (531)
|+.+..+. +++.++|.+.+.+.+.. +|...+...+++.+++.+..+. .+++
T Consensus 382 g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~~ 435 (438)
T PRK09952 382 GVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-MKDN 435 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-cccc
Confidence 99776654 89999999999998854 3666666666666666555443 3543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=271.77 Aligned_cols=393 Identities=15% Similarity=0.136 Sum_probs=250.3
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
.|.++..+++.....+.++..++...|++.++ |++..+. +++.+.+.+++.++++++|+++||+|||++++.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~ 103 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 103 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence 45555555666666777777777888999988 9999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHH-HHHHHhhcccCCC
Q 009617 182 AAGAFLCATAQ----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGN 256 (531)
Q Consensus 182 ~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~ 256 (531)
+++.+++++++ +++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+.++|. +.+++++..+...
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 183 (452)
T PRK11273 104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF 183 (452)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999888763 788899999999999998888888899999999999999999999999886 4566654333222
Q ss_pred CchhHHHHHHhHHHHHHH-HHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccc-hhhh
Q 009617 257 PLWWRTMFGLAAIPSILL-ALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAG-WFDL 334 (531)
Q Consensus 257 ~~gwr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 334 (531)
.+||+.|++.++++++. .+..+++||+|+....++ .++.++ +.+. +.+++++++.+.+.. .+.+
T Consensus 184 -~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~------~~~~------~~~~~~~~~~~~~~~~~~~~ 249 (452)
T PRK11273 184 -NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN------DYPD------DYNEKHEQELTAKQIFMQYV 249 (452)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh------cccc------ccccccCCCccHHHHHHHHH
Confidence 58999999998877654 444556788775321111 000000 0000 000000000000111 1224
Q ss_pred hccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhH--------------HHHHHHHhhhc--CccHHHH
Q 009617 335 FSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--------------ASALVGAANVF--GRKNLLT 397 (531)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--------------~~~~~~~~~~~--gr~~~~~ 397 (531)
++++..+...+...+.... .+....|.|.++++ .|++.... ....+.++||+ +||....
T Consensus 250 ~~~~~~~~~~l~~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~ 325 (452)
T PRK11273 250 LPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 325 (452)
T ss_pred HcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence 5555544444333332221 23344556666654 56664422 22334568998 4454322
Q ss_pred -HHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHH
Q 009617 398 -FSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFV 476 (531)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 476 (531)
....+..++.+++... ...+.....+....++... .+.......+..|.+|++.+|+++|+.+...++|+.+
T Consensus 326 ~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 398 (452)
T PRK11273 326 VFFMTLVTIATIVYWLN------PAGNPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 398 (452)
T ss_pred HHHHHHHHHHHHHHHHh------cccChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHH
Confidence 2222222222222111 0111111222222222211 1112222335679999999999999999999998765
Q ss_pred -HHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccCCCCCHHHH
Q 009617 477 -IGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEI 523 (531)
Q Consensus 477 -~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (531)
+|.+.|.+.|..||...|.+.+++++++.+....+.+ .++|++|+.
T Consensus 399 ~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 445 (452)
T PRK11273 399 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI-GEKRHHEEL 445 (452)
T ss_pred hhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc-cccchHHHH
Confidence 7999999999999999998888877777665544333 333444443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=267.64 Aligned_cols=356 Identities=16% Similarity=0.147 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 184 (531)
++....+..+..+. ....++..|.+.+++|++..+. +++.+++.+++.++++++|+++||+|||+++..+.++.+++
T Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~ 81 (377)
T TIGR00890 5 VLVGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG 81 (377)
T ss_pred EeHHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence 33333333344333 4466789999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHH
Q 009617 185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (531)
Q Consensus 185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f 264 (531)
.+++++++|++.+++.|++.|++.+..++.....+.+++| ++|+++.++...+.++|.++++.+.+.+.+. .+||+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~f 159 (377)
T TIGR00890 82 FTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-EGVPAAF 159 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-ccHHHHH
Confidence 9999999999999999999999999888888889999997 4699999999999999987655555444433 6899999
Q ss_pred HHhHHHHHHHHHHhc-ccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHH
Q 009617 265 GLAAIPSILLALGMG-LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVV 343 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (531)
++.+++.++..+..+ +++|+++.. .+++.+ .+.++.+.++.++++..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 210 (377)
T TIGR00890 160 IYMGIIFLLVIVLGAFLIGYPPGQL-IKTNIE----------------------------VSVKDYTVWEMLRTPQFWVL 210 (377)
T ss_pred HHHHHHHHHHHHHHHHheecCchhc-cccCcc----------------------------cchhhhhHHHHHcCccHHHH
Confidence 999988876655444 344433210 000000 00011123455566555444
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhh--------------HHHHHHHHhhhcCccHHHHHHhHHHHHHHHH
Q 009617 344 SVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV--------------AASALVGAANVFGRKNLLTFSFTGMAASMLL 409 (531)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~ 409 (531)
.+........ ......+.+.+.++.+.+... .....+.+.||++||+.+..+.++.+++.++
T Consensus 211 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 286 (377)
T TIGR00890 211 YLSFFLNAVS----GLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAA 286 (377)
T ss_pred HHHHHHHhHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 4333222221 112222333344566665532 2223344689999999988888777777766
Q ss_pred HHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 009617 410 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG 489 (531)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 489 (531)
+.... .......+....+.+.+.+ ...+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..|
T Consensus 287 ~~~~~------~~~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 359 (377)
T TIGR00890 287 MLFIP------MLNDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG 359 (377)
T ss_pred HHHcc------cchhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 54421 1111112222223333332 2333445578899999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHH
Q 009617 490 ISTVYLGFATVCLLAV 505 (531)
Q Consensus 490 ~~~~~~~~~~~~~~~~ 505 (531)
|...|.+.+++++++.
T Consensus 360 ~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 360 FEYTFIVTGAFALTSL 375 (377)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 9988888777666653
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=268.86 Aligned_cols=370 Identities=14% Similarity=0.013 Sum_probs=258.2
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
.|.++..++++.+...++.++.+..+|.+.+|+|.+.++. +|+.+.|.+++.++++++|+++||+|||++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4667888899999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcC-CccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchh
Q 009617 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
+++++++++++|++.++++|+++|++.+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+.+. .||
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~-~gw 160 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH-FYW 160 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCh
Confidence 999999999999999999999999999998888888887776 678899999999999999999999999999865 799
Q ss_pred HHHHHHhHHHHHHHHH-HhcccccchhHHHHhCChHHHHHH------------HHHHhCccchHH-H----------HHH
Q 009617 261 RTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKS------------IQTLYGKERVSE-V----------MLD 316 (531)
Q Consensus 261 r~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~----------~~~ 316 (531)
||.|++...++++..+ ..+++||+++.. +++.+..... .+.......... . ...
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 238 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGL 238 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 9999998877755444 444567755311 1111111100 000000000000 0 000
Q ss_pred HHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhHH--------------H
Q 009617 317 LTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVAA--------------S 381 (531)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~--------------~ 381 (531)
....+. ..+.+.--.++++++.+....+..+..... +....++.+.++ ...|++....+ .
T Consensus 239 f~~~e~-~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~ 313 (495)
T PRK14995 239 FIRTQL-AASRPMIDMRLFTHRIILSGVVMAMTAMIT----LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGP 313 (495)
T ss_pred HHHHHh-cCCCCCcCHHHhCCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000011 111111224567766554443332222221 233344445444 44677765332 3
Q ss_pred HHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhH
Q 009617 382 ALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 461 (531)
Q Consensus 382 ~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 461 (531)
..+.+.||+|+|+.+..+.++.+++.+++.... ...+.+......++.+.+.+.... .......+..|+++++.
T Consensus 314 ~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~g~ 387 (495)
T PRK14995 314 IAGILVSRLGLRLVATGGMALSALSFYGLAMTD-----FSTQQWQAWGLMALLGFSAASALL-ASTSAIMAAAPPEKAAA 387 (495)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHhHHHHHH-HHHHHHHhcCCHHhcch
Confidence 334468999999988888877777766554321 111222233344444555443333 33336677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009617 462 AVALSLGMHWISNFVIGLYFLSVVNK 487 (531)
Q Consensus 462 ~~g~~~~~~~~g~~i~~~~~g~~~~~ 487 (531)
+.++.++.+++|+.+|+.+.|.+.+.
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988753
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=263.61 Aligned_cols=347 Identities=16% Similarity=0.174 Sum_probs=225.3
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHH-HHH-----HHHHHHHHHhHHhhhhhccchhhhhh
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV-SSL-----LAGATVGSFTGGSLADKFGRTRTFQL 176 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~-s~~-----~~~~~i~~~~~g~l~dr~Grr~~~~~ 176 (531)
+.....++++.+.+++|+..+++..|.+.+|++.++.+. +.+. +.. .++..+++++.|+++||+|||++++.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEF--ASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 335777888999999999999999999999999988775 4332 222 22334789999999999999999999
Q ss_pred hhHHHHHHHHHHHHhchHHH--------HHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHH
Q 009617 177 DAVPLAAGAFLCATAQSVQT--------MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALV 248 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 248 (531)
+.+++++++++++++++++. ++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 6899999999999999989999999999999999999999888888877777
Q ss_pred hhcccCC-------CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhc
Q 009617 249 AGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG 321 (531)
Q Consensus 249 ~~~~l~~-------~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (531)
+++.+.. ...|||++|++..+...+........||++++...+++
T Consensus 172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---------------------------- 223 (434)
T PRK15075 172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR---------------------------- 223 (434)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc----------------------------
Confidence 7666521 23789999987554332222222223333221100000
Q ss_pred cCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhH--------------HHHHHHH
Q 009617 322 QGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--------------ASALVGA 386 (531)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--------------~~~~~~~ 386 (531)
.+.+..++...++ ++.........+. ....+.....|.|.++++ .|++.... ....+.+
T Consensus 224 ---~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 297 (434)
T PRK15075 224 ---PSMREIFRSLAAN--WRIVLAGMLMVAM-TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGAL 297 (434)
T ss_pred ---cccccHHHHHHHh--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111122222 1222222222222 233355566677776654 57765421 1222446
Q ss_pred hhhcCccHHHHHHhHHHHHHHHH-HHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHH
Q 009617 387 ANVFGRKNLLTFSFTGMAASMLL-LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL 465 (531)
Q Consensus 387 ~~~~gr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 465 (531)
+||+|||+.+..+.++..+.... +.... .............+.+.+++ ...+....+..|.+|++.|+++.|+
T Consensus 298 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~ 371 (434)
T PRK15075 298 SDRIGRRPVLIAFTVLAILTAYPALSWLV-----AAPSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSL 371 (434)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHH-----cCCchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeH
Confidence 89999999877665443322211 11110 01111111121222222222 2233444578899999999999999
Q ss_pred HHHHHHH-HHHHHHHhhHHHHHhhccc
Q 009617 466 SLGMHWI-SNFVIGLYFLSVVNKFGIS 491 (531)
Q Consensus 466 ~~~~~~~-g~~i~~~~~g~~~~~~g~~ 491 (531)
.+.++.. ++.++|.+.|.+.+..|+.
T Consensus 372 ~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 372 AYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 7666554 5888999999999988853
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=254.20 Aligned_cols=417 Identities=21% Similarity=0.268 Sum_probs=297.1
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhc-CC-------CcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccch
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-GI-------AENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT 171 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-------s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr 171 (531)
|+-...+.+..++.+.+.++...++.+.|.+...+ |- +.... +.+..+..+|..+||+++|++.||+|||
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~--~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVL--ALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHH--HHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 34456677788899999999999999999887765 22 23334 8889999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhc-------hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHH
Q 009617 172 RTFQLDAVPLAAGAFLCATAQ-------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL 244 (531)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 244 (531)
+++...++++.+++++++++. -..++...|+++|+|.|+-+|...++.+|...++.||...+...+..++|..
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 999999999999999888762 2467889999999999999999999999999999999998888877777777
Q ss_pred HHHHhhcccC----CC----------CchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccch
Q 009617 245 AALVAGLPLA----GN----------PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERV 310 (531)
Q Consensus 245 ~g~~~~~~l~----~~----------~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (531)
.|.+++-.+. .. ..=||..|.+.+++.+......+.+||++++.....++.+... ++..+....
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~--~d~~k~~~~ 272 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA--GDMKKVLSV 272 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh--hcccccccc
Confidence 6666654432 10 0139999999999988888888889999987643332221111 111111111
Q ss_pred HHHHHHHHHhccCCCCCccchh---hhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhH--------
Q 009617 311 SEVMLDLTNAGQGSAEPEAGWF---DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA-------- 379 (531)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------- 379 (531)
...+..+.......++.+.. ..+..+..+.++.....++.... .++....+...+++..|+.+...
T Consensus 273 --~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDi-afy~~nL~~s~I~~~ig~~~~~~~~~~~~~v 349 (538)
T KOG0252|consen 273 --DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDI-AFYGQNLFQSVIFSAIGVIPSANTYHELFKV 349 (538)
T ss_pred --ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccccHHHHHHHhhccCCCcchHHHHHHH
Confidence 11111111111111222222 22222222333333333333333 34455556667777666544311
Q ss_pred ---HHHHH------------HHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCccc
Q 009617 380 ---ASALV------------GAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGP 444 (531)
Q Consensus 380 ---~~~~~------------~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (531)
..+++ .++|++||++..+.++.++.+..+.++..+.. ..+....++...+..++...+...
T Consensus 350 A~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~----~~~~~Gf~v~y~l~~ff~NFGPn~ 425 (538)
T KOG0252|consen 350 AEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ----LENTIGFVVLYSLTFFFGNFGPNA 425 (538)
T ss_pred HHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc----ccccCceeehHHHHHHHHhcCCCc
Confidence 11111 13899999999999999999988888765432 113333444444555555667777
Q ss_pred ccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH-----hhccchhhHHHHHHHHHHHHHhheecccCCCCC
Q 009617 445 VPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN-----KFGISTVYLGFATVCLLAVLYIAVNVVETKGRS 519 (531)
Q Consensus 445 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (531)
....+.+|.+|++.|+++.|+....+.+|++++...++++.+ ..|.++++++++++++++.++.++ .||+++|+
T Consensus 426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~~~ 504 (538)
T KOG0252|consen 426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKGKS 504 (538)
T ss_pred eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-eecccccC
Confidence 777789999999999999999999999999999999999999 778899999999999888776655 56999999
Q ss_pred HHHHHHhhC
Q 009617 520 LEEIERALN 528 (531)
Q Consensus 520 ~~~~~~~~~ 528 (531)
+++++++.+
T Consensus 505 leei~~e~~ 513 (538)
T KOG0252|consen 505 LEEISNEEE 513 (538)
T ss_pred HHHhcChhh
Confidence 999876654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=269.69 Aligned_cols=390 Identities=14% Similarity=0.194 Sum_probs=257.4
Q ss_pred chhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHH
Q 009617 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (531)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (531)
+.+..+..+++..+.+.++....++.+|.+.+++|++..+. +++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34567777788888899999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchh
Q 009617 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
.+++.++++++++++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+.+. .+|
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w 173 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV-WGW 173 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988754 799
Q ss_pred HHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHH-HH------HHHhccCCCCCccchh-
Q 009617 261 RTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVM-LD------LTNAGQGSAEPEAGWF- 332 (531)
Q Consensus 261 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~- 332 (531)
|+.|++..+..++..+....+||++++...+++..+..+..+.....+...... .. ....... .....+.
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 251 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAG--NLQNAAIV 251 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHh--hhcchhHH
Confidence 999987555444444444456776654322211111111111000000000000 00 0000000 0000000
Q ss_pred ---------------hhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhH--------------HHH
Q 009617 333 ---------------DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--------------ASA 382 (531)
Q Consensus 333 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--------------~~~ 382 (531)
...+.+.+.. ........+..+........+.|.++ ++.|++.... ...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~ 330 (496)
T PRK03893 252 AVLGLLCAAIFISFMVQSSGKRWPT-GVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCV 330 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001111 11111111111111112334555555 4677766432 233
Q ss_pred HHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHH
Q 009617 383 LVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 462 (531)
Q Consensus 383 ~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 462 (531)
.+.+.||+|||+.+..+.++..+..+++... .. ..........+...+.+.+..+....++.|.+|++.|+++
T Consensus 331 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 403 (496)
T PRK03893 331 GGFLGDWLGTRKAYVCSLLISQLLIIPVFAI------GG-ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAG 403 (496)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhhc------cc-cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcc
Confidence 3446899999998887765555444333221 01 1112222222222222333344555578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHH
Q 009617 463 VALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLL 503 (531)
Q Consensus 463 ~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~ 503 (531)
+|+.+....+|+.++|.+.|.+.+..|+...+...++++.+
T Consensus 404 ~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 404 LGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999988777665544433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=264.27 Aligned_cols=375 Identities=18% Similarity=0.147 Sum_probs=256.6
Q ss_pred HHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhch
Q 009617 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS 193 (531)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 193 (531)
+...++...++...|.+.+++|.+..+. +++.+++.++..++++++|+++||+|||+++..+.++++++.++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 4456677788889999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHH
Q 009617 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (531)
Q Consensus 194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~ 273 (531)
++.+++.|++.|++.+...+....++.|++|+++|++++++......+|.++++.+++.+.+. .+||+.|++.+++.++
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-FSWQWAFIIEGVLGII 160 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987744 7899999999888766
Q ss_pred HHHHhc-ccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHH
Q 009617 274 LALGMG-LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLF 352 (531)
Q Consensus 274 ~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (531)
..+..+ +.||+++... ..++++.....+.. ....++++.++.++...++.++++..+...+...+...
T Consensus 161 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (399)
T TIGR00893 161 WGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGL----------LAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI 229 (399)
T ss_pred HHHHhhheecCCCCccc-cCCHHHHhhcchhh----------ccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence 555443 4566543110 00111100000000 00000111122233456677776655444443333222
Q ss_pred HHhhhHHHHHHhHHHHH-HHcCCChhh--------------HHHHHHHHhhhcCccHHHH-HHhHHHHHHHHHHHHHhhc
Q 009617 353 QQLAGINAVVYYSTSVF-RSVGIESDV--------------AASALVGAANVFGRKNLLT-FSFTGMAASMLLLSLSFTW 416 (531)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-~~~g~~~~~--------------~~~~~~~~~~~~gr~~~~~-~~~~~~~~~~~~~~~~~~~ 416 (531)
.......+.+.+. +..|.+... .....+.+.||++||+... .......++.+........
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (399)
T TIGR00893 230 ----GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA 305 (399)
T ss_pred ----HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 2333444444444 445665432 2223344689999886211 1111111111111111000
Q ss_pred ccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhH
Q 009617 417 KVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYL 495 (531)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~ 495 (531)
. .........+..... .++..+..+....+..|.+|++.|+++.|+.+.+.++|+.++|.+.|.+.+..| +...+.
T Consensus 306 ~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~ 382 (399)
T TIGR00893 306 T--NYVNIPYAALALVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALM 382 (399)
T ss_pred h--ccchhHHHHHHHHHH-HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHH
Confidence 0 000112222222222 223333567777799999999999999999999999999999999999999988 888888
Q ss_pred HHHHHHHHHHHHhh
Q 009617 496 GFATVCLLAVLYIA 509 (531)
Q Consensus 496 ~~~~~~~~~~~~~~ 509 (531)
+.+++++++.++.+
T Consensus 383 ~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 383 VVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877777666544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=259.78 Aligned_cols=351 Identities=19% Similarity=0.175 Sum_probs=245.1
Q ss_pred HHHHHHHHHHhhHhHHhhhhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHH
Q 009617 106 VGVACLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (531)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 184 (531)
+..+++..+...++..+..+.+|. +.+++|.+..+. |++.+++.+++.+++++.|+++||+|||++++.+.++++++
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (399)
T PRK05122 17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS 94 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence 334556666677777788888886 688999999999 99999999999999999999999999999999999998887
Q ss_pred HHHHHHh--------chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009617 185 AFLCATA--------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (531)
Q Consensus 185 ~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 256 (531)
.++++++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++|+.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 174 (399)
T PRK05122 95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW 174 (399)
T ss_pred HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence 7766553 25678999999999999999999999999999999999999999999999999999999888754
Q ss_pred CchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhc
Q 009617 257 PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFS 336 (531)
Q Consensus 257 ~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (531)
.||++.+++.+++.++..+.....|++++. ++++ .++++.++
T Consensus 175 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------------~~~~~~~~ 216 (399)
T PRK05122 175 -GGLAGLGLLIMLLALLGLLLARPRPAVPPV---KGER----------------------------------LPFRRVLG 216 (399)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cccc----------------------------------hhHHHHHH
Confidence 789999887776655444333223332210 0000 01111111
Q ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh------------hHHHHHHHHhhhcCccHHHHHHhHHHH
Q 009617 337 SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD------------VAASALVGAANVFGRKNLLTFSFTGMA 404 (531)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~~gr~~~~~~~~~~~~ 404 (531)
. .+.. .....+... .+.....+.+.+..+.+.+.. ......+.+.||+++|+.+..+..+.+
T Consensus 217 ~-~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 290 (399)
T PRK05122 217 R-VWPY-GMGLALASI----GFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEI 290 (399)
T ss_pred H-HHHH-HHHHHHHHH----HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 1111 111111111 122223333444444444221 122233446899999998888877777
Q ss_pred HHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 009617 405 ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSV 484 (531)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~ 484 (531)
++.+++.... +.+..++..++.+.+.+. ..+.......|..|++.|+++.|+++....+|..++|++.|.+
T Consensus 291 ~~~~~~~~~~--------~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 361 (399)
T PRK05122 291 LGLLLLWLAP--------SPWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV 361 (399)
T ss_pred HHHHHHHHhc--------cHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554421 223333333444444432 2334444667888999999999999999999999999999999
Q ss_pred HHhhccchhhHHHHHHHHHHHHHhhee
Q 009617 485 VNKFGISTVYLGFATVCLLAVLYIAVN 511 (531)
Q Consensus 485 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 511 (531)
.+..|++..+.+.+++++++.++.+.+
T Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 362 ASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998888777776665543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=252.36 Aligned_cols=364 Identities=13% Similarity=0.044 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHHhhHhHHhhhhhHHHHHH-hcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 104 PFVGVACLGAILFGYHLGVVNGALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
..+.+..++.+.........+++.+.+.+ ++|+|.+|. +++.+++.+++.+++++.|++.||+|.|+++.++.++++
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 35555666667777778888899998876 899999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC---
Q 009617 183 AGAFLCATA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA--- 254 (531)
Q Consensus 183 ~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--- 254 (531)
+.+++++++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999987 8999999999999998 7788999999999999999999999997777777665544443211
Q ss_pred --------------CCCchhHHHHHHhHHHHHHHHHHhccc-ccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHH
Q 009617 255 --------------GNPLWWRTMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319 (531)
Q Consensus 255 --------------~~~~gwr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (531)
....+||.++++..++.++..++.+++ ++.+. .+.
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~--------------------------- 240 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRA--------------------------- 240 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---ccc---------------------------
Confidence 013469999888888776666555443 33221 000
Q ss_pred hccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh--------------hHHHHHHH
Q 009617 320 AGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--------------VAASALVG 385 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~~ 385 (531)
...+..+.+|++..|...+.++. .+.++..+.++.|++.++ .++.. ....+.+.
T Consensus 241 -------~~~~~~~vlk~~~~Wllslly~~----tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~ 308 (462)
T PRK15034 241 -------SIADQLPVLQRLHLWLLSLLYLA----TFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGA 308 (462)
T ss_pred -------CHHHHHHHhCCCchhHHHHHHHH----HHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHH
Confidence 01123345566655554444333 233355566566666544 22111 11223455
Q ss_pred HhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccCh---------
Q 009617 386 AANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS--------- 456 (531)
Q Consensus 386 ~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------- 456 (531)
++||+|+++++.++.+.+.++...+..... .....+.+......+......+.+..++.. ++.+.+|+
T Consensus 309 LADRiG~~~vl~~~~i~~~i~~~~~~l~lp--~~~~~~~~~~~~~~~~l~~~~G~gngsvfk-~ip~~f~~~~~~~~~~~ 385 (462)
T PRK15034 309 ISDKFGGVRVTLINFIFMAIFSALLFLTLP--GTGSGNFIAFYAVFMGLFLTAGLGSGSTFQ-MIAVIFRQITIYRVKMK 385 (462)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHhcccchHHHH-hhHHHHhhhhhhccccc
Confidence 799999999999888877776654333211 000112222233232223333444444443 56666663
Q ss_pred ------------hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhHHHHHHHHHHHHHhheecccC
Q 009617 457 ------------RIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLYIAVNVVET 515 (531)
Q Consensus 457 ------------~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (531)
++.|.+.|+...++.+|+++.|.+.|...+..| +...|..+.+..+++.++.|..+.++
T Consensus 386 ~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 386 GGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred ccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 267899999999999999999999999988876 66678888888888888877655443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=252.34 Aligned_cols=352 Identities=18% Similarity=0.108 Sum_probs=241.1
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
|..+..+.+..+..........+.+|.+.+++|.+..+. ++..+++.++..++++++|+++||+|||++++.+.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~ 96 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 444444444444444444455567899999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~ 262 (531)
++.++++++++++.+++.|+++|++.+...+....++.|++|+++|++++++...+.++|.+++|.+++.+.+. .|||+
T Consensus 97 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-~gw~~ 175 (394)
T PRK10213 97 LSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-IGWRN 175 (394)
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998854 79999
Q ss_pred HHHHhHHHHHHHHHHhc-ccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhH
Q 009617 263 MFGLAAIPSILLALGMG-LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
.|++.++++++..+..+ ..||+++. +++ .....++.++++..+
T Consensus 176 ~f~~~~~l~~~~~l~~~~~~p~~~~~----~~~--------------------------------~~~~~~~~l~~~~~~ 219 (394)
T PRK10213 176 VFNAAAVMGVLCIFWIIKSLPSLPGE----PSH--------------------------------QKQNTFRLLQRPGVM 219 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCcc----ccc--------------------------------chhHHHHHhcCHHHH
Confidence 99998877765444332 35654321 000 001123345555444
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHHH--------------HHHhhhcCccHHHHHHhHHHHHH-
Q 009617 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASAL--------------VGAANVFGRKNLLTFSFTGMAAS- 406 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~gr~~~~~~~~~~~~~~- 406 (531)
...+...+.... .+....+..|.+.++.|++....+... +.+.||.+ ++.+.....+..+.
T Consensus 220 ~~~~~~~~~~~~---~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~ 295 (394)
T PRK10213 220 AGMIAIFMSFAG---QFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHH
Confidence 433332222221 122233445777777787765322211 12345533 33333333332222
Q ss_pred HHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 407 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
.++.... .+.+......++.+.+++. ..+....++.+..| ++++.+.++.....++|..+||.+.|.+.|
T Consensus 296 ~~l~~~~--------~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~ 365 (394)
T PRK10213 296 LVLTLWG--------SDKIVATGVAIIWGLTFAL-VPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD 365 (394)
T ss_pred HHHHHHh--------hhHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222221 0223333334444444433 33344446667777 456777888888889999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHHH
Q 009617 487 KFGISTVYLGFATVCLLAVLY 507 (531)
Q Consensus 487 ~~g~~~~~~~~~~~~~~~~~~ 507 (531)
..|+...+...+++.++..+.
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 366 NIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred ccChhhHHHHHHHHHHHHHHH
Confidence 999877777766655555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=254.29 Aligned_cols=357 Identities=15% Similarity=0.111 Sum_probs=248.0
Q ss_pred HHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHH
Q 009617 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (531)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 185 (531)
+..+++..+..+.......+.+|.+++|+|.+..+. |++.+++.+++.++++++|+++||+|||+++..+.++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 445566677777878888899999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHH
Q 009617 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (531)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~ 265 (531)
+++++++|++.+++.|++.|++.+...+....++.|++++++|+++++++..+..+|..+++.+++.+.+. .+||++|+
T Consensus 83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~gwr~~f~ 161 (382)
T PRK10091 83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-FSWRYTFL 161 (382)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-ccHHHHHH
Confidence 99999999999999999999999988888889999999999999999999999999999999999888754 78999999
Q ss_pred HhHHHHHHHHHH-hcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHH
Q 009617 266 LAAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVS 344 (531)
Q Consensus 266 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (531)
+.+++.++..+. .+++||.++ +.+. +.++ .+ +.++++..+...
T Consensus 162 ~~~~~~~~~~~~~~~~lp~~~~----~~~~-~~~~------------------------------~~-~~~~~~~~~~~~ 205 (382)
T PRK10091 162 LIAVFNIAVLASIYFWVPDIRD----EAKG-GLRE------------------------------QF-HFLRSPAPWLIF 205 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc----cccc-CHHH------------------------------HH-HHhcChHHHHHH
Confidence 998877655443 344676532 0000 0000 00 112233222222
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHHH--------------HHHhhhcCccHHHHHHhHHHHHHHHHH
Q 009617 345 VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASAL--------------VGAANVFGRKNLLTFSFTGMAASMLLL 410 (531)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~gr~~~~~~~~~~~~~~~~~~ 410 (531)
.... ......+....+..+++.+..|++....+... +.+.||+++|+.+..+..+.+++.+++
T Consensus 206 ~~~~---~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~ 282 (382)
T PRK10091 206 AATM---FGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML 282 (382)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence 2111 11111112223334555555677765333222 224799999998888877777766554
Q ss_pred HHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh-hc
Q 009617 411 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK-FG 489 (531)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~-~g 489 (531)
.... + ..+..++..++...+......+.......+..|.+.++.+ ..+....+|.+++|.+.|.+.|. .+
T Consensus 283 ~~~~------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~ 353 (382)
T PRK10091 283 FFFG------G-MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLA 353 (382)
T ss_pred HHHH------h-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccC
Confidence 3321 0 1222233333333333222222332244454555555544 44677899999999999999996 57
Q ss_pred cchhhHHHHHHHHHHHHHhheecc
Q 009617 490 ISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
|...+...++++++.......+.+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 354 YNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhh
Confidence 888888877666666555444333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=257.76 Aligned_cols=356 Identities=12% Similarity=0.091 Sum_probs=250.7
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
+.+...+++..+..+......++.+|.+.+++|++..+. +++.+.+.+++.++++++|++.||+|||+++..+.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345556677788888888889999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~ 262 (531)
++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.....+||+
T Consensus 84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~ 163 (394)
T PRK03699 84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW 163 (394)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999999999999999999999999999999999888999988999888776544479999
Q ss_pred HHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHH
Q 009617 263 MFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (531)
.|++.+++.++..+..++ .+.|+. ++++++ + .++ ..+..+ ++..+.
T Consensus 164 ~f~~~~~~~~~~~~~~~~-~~~p~~---~~~~~~----------~---------------~~~----~~~~~~-~~~~~~ 209 (394)
T PRK03699 164 VYACIGLVYVAIFILTLF-SEFPAL---GKHAPK----------A---------------DKP----VAKEKW-GIGVLF 209 (394)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCccc---cccCcc----------c---------------cCc----cccccC-ChHHHH
Confidence 999988877655544332 222210 000000 0 000 000111 111222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhHH--------------HHHHHHhhhcCccHHHHHHhHHHHHHH
Q 009617 343 VSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVAA--------------SALVGAANVFGRKNLLTFSFTGMAASM 407 (531)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~~~~~~~~~~~ 407 (531)
..+...+. ...+.....|.|.+. +..|++....+ ...+.++||+++|+.+.....+..+..
T Consensus 210 ~~~~~~~~----~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~ 285 (394)
T PRK03699 210 LAIAALLY----ILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLM 285 (394)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 22222221 222344455666666 55677664322 222345899999998887666555544
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009617 408 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 487 (531)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 487 (531)
.++... + +.....+..++.+.+.+ +..+...++..+..| +.++...|....+.++|+.++|.+.|.+.+.
T Consensus 286 ~~~~~~-------~-~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~ 355 (394)
T PRK03699 286 YLFVNT-------D-DPSHLLYAILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH 355 (394)
T ss_pred HHHHHc-------C-CchHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 444321 1 12222222233333222 233444445666666 4467788999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHh
Q 009617 488 FGISTVYLGFATVCLLAVLYI 508 (531)
Q Consensus 488 ~g~~~~~~~~~~~~~~~~~~~ 508 (531)
.|++..++..+++++++.++.
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 356 FGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred hCchhhhhhhHHHHHHHHHHH
Confidence 999988888877776665543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=254.20 Aligned_cols=349 Identities=18% Similarity=0.216 Sum_probs=239.9
Q ss_pred HHHHHHHhhHhHHhhhhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHH
Q 009617 109 ACLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (531)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 187 (531)
+.++.+...+..+...|.+|. +.+++|.|..+. |++.+++.+++.++++++|+++||+|||++++.+.++..++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (392)
T PRK12382 20 IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA 97 (392)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 334445555566777778875 688999999999 99999999999999999999999999999999998887776543
Q ss_pred HHH--------hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch
Q 009617 188 CAT--------AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (531)
Q Consensus 188 ~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g 259 (531)
... .++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++||++++.+.+. .|
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~-~g 176 (392)
T PRK12382 98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH-FG 176 (392)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc-cC
Confidence 321 357889999999999999988888889999999999999999999999999999999999888754 78
Q ss_pred hHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccch
Q 009617 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339 (531)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (531)
||+.+++..+..++........||.++. +++ +.+.++.++. .
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----------------------------------~~~~~~~~~~-~ 218 (392)
T PRK12382 177 FAALALTTMVLPLLAWAFNGTVRKVPAH---AGE----------------------------------RPSLWSVVGL-I 218 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCC---ccc----------------------------------CchHHHHHHH-H
Confidence 9988776655443333322222332110 000 0001111110 0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh------------hHHHHHHHHhhhcCccHHHHHHhHHHHHHH
Q 009617 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD------------VAASALVGAANVFGRKNLLTFSFTGMAASM 407 (531)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~ 407 (531)
+... +...+.. ........+.+.++++.+.+.. ......+.+.||+|+|+.+..+..+.+++.
T Consensus 219 ~~~~-~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~ 293 (392)
T PRK12382 219 WKPG-LGLALQG----VGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGL 293 (392)
T ss_pred HHhH-HHHHHHH----HHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHH
Confidence 1110 1111111 1122233344444444444322 112223345899999999888887777776
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009617 408 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 487 (531)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 487 (531)
+++... + +....++...+.+.+.+. ..+.......|.+|+++||++.|+.++...+|..++|.+.|.+.+.
T Consensus 294 ~~~~~~-------~-~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~ 364 (392)
T PRK12382 294 LLLWLA-------P-TAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS 364 (392)
T ss_pred HHHHHc-------c-cHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655432 1 222333333344443332 3344444677888999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHhheec
Q 009617 488 FGISTVYLGFATVCLLAVLYIAVNV 512 (531)
Q Consensus 488 ~g~~~~~~~~~~~~~~~~~~~~~~~ 512 (531)
.||+..|.+.+++.+++.++.+...
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 365 FGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred hCchHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998888877777665443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=261.58 Aligned_cols=369 Identities=15% Similarity=0.060 Sum_probs=261.9
Q ss_pred HHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHH---
Q 009617 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT--- 190 (531)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--- 190 (531)
+...+......+.+|.+.++++.+..+. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~ 104 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF 104 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence 3444455666778899999999988888 99999999999999999999999999999999998888877665542
Q ss_pred --hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 191 --AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 191 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
.++++.+++.|++.|++.+...+...+++.|++|+++|+++.++......+|..+|+.+++.+.+. .+|++.|++.+
T Consensus 105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-~~~~~~~~~~~ 183 (417)
T PRK10489 105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA-GGVAWNYGLAA 183 (417)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-HhhHHHHHHHH
Confidence 567889999999999998888888899999999999999999999999999999999999988743 68999999888
Q ss_pred HHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHH
Q 009617 269 IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAA 348 (531)
Q Consensus 269 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (531)
+..++..+..+.+||+++.. +++++..+ +.+..++..++++..+...+...
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~---~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T PRK10489 184 AGTFITLLPLLRLPALPPPP---QPREHPLR--------------------------SLLAGFRFLLASPVVGGIALLGG 234 (417)
T ss_pred HHHHHHHHHHHhCCCCCCCC---cccccchH--------------------------HHHHHHHHHHcChHHHHHHHHHH
Confidence 77766666666677654311 00000000 00112334455555444333322
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHH-cCCChhhHHHH--------------HHHHhhhcCccHHHHHHhHHHHHHHHHHHHH
Q 009617 349 LFLFQQLAGINAVVYYSTSVFRS-VGIESDVAASA--------------LVGAANVFGRKNLLTFSFTGMAASMLLLSLS 413 (531)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~--------------~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~ 413 (531)
+... ......+.|.+.++ .|.+....+.. .+.+.||.++++.+..+.++.+++.+++...
T Consensus 235 ~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T PRK10489 235 LLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM 309 (417)
T ss_pred HHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc
Confidence 2111 12233345555555 67665432222 1223666666667777766666665554331
Q ss_pred hhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchh
Q 009617 414 FTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTV 493 (531)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~ 493 (531)
+ +.....+..++++.+.+ ...+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+..|+...
T Consensus 310 -------~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~ 380 (417)
T PRK10489 310 -------P-MWILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVAS 380 (417)
T ss_pred -------c-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhH
Confidence 0 22222233333333322 22344556788999999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHhheecccCCCCCHHHHHHhhC
Q 009617 494 YLGFATVCLLAVLYIAVNVVETKGRSLEEIERALN 528 (531)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (531)
+...+++.++..++.+...++.|+++++|.+++-.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (417)
T PRK10489 381 ASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS 415 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 88888777777777777778888888888777644
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=260.73 Aligned_cols=364 Identities=12% Similarity=0.053 Sum_probs=227.4
Q ss_pred HHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHH
Q 009617 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (531)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 185 (531)
+...+...+...+......+..|.+.+++|++..+. +++.+.+.+++.+++++.|+++||+|||+++..+.++++++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~ 115 (476)
T PLN00028 38 FHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAV 115 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 334444455555556677788999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC----C----CC
Q 009617 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA----G----NP 257 (531)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~----~----~~ 257 (531)
++++++++++.+++.|+++|++.+.. +....+++|++|+++|++++++...+.++|..+++.+...+. . ..
T Consensus 116 ~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 116 FCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 99999999999999999999998764 445668999999999999999998777777766655554331 1 12
Q ss_pred chhHHHHHHhHHHHHHHHHHhccccc-chhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhc
Q 009617 258 LWWRTMFGLAAIPSILLALGMGLSPE-SPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFS 336 (531)
Q Consensus 258 ~gwr~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (531)
.|||+.|++.++++++..+..+++++ .|+. +.++..+ +.+.++.+....+++.++
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 250 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-----NYRELKK-------------------SGTMPKDSFSKVLRYGVT 250 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----chhhHHh-------------------cCccccccHHHHHHHHHc
Confidence 58999999999988766655555443 3320 0000000 000000000112344455
Q ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHHcCCChhhHH--------------HHHHHHhhhcCccH-------
Q 009617 337 SRYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FRSVGIESDVAA--------------SALVGAANVFGRKN------- 394 (531)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~--------------~~~~~~~~~~gr~~------- 394 (531)
++..+...+........ ......+.|.+ .+..|++..... ...+.++||++||+
T Consensus 251 ~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~ 326 (476)
T PLN00028 251 NYRTWILALTYGYSFGV----ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLW 326 (476)
T ss_pred CchhHHHHHHHHHHHHH----HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHH
Confidence 54444333332222111 22233344444 455677755322 23345689998652
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHH
Q 009617 395 LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISN 474 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 474 (531)
......++.++..+++.. ..+....++..+++..+...+ .+..+.+..+..| +.+|++.|+.+..+++|+
T Consensus 327 ~~~~~~~l~~i~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~ 396 (476)
T PLN00028 327 ALWIVQTLGGVFCIWLGR--------ANSLGAAIVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAGGNVGA 396 (476)
T ss_pred HHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhccccHHH
Confidence 222222222222221111 111222222223333332222 2233445566654 789999999988888888
Q ss_pred HHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhhee
Q 009617 475 FVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVN 511 (531)
Q Consensus 475 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 511 (531)
+++|.+.+ ..+..+|...|.+.+++.+++.++.++.
T Consensus 397 ~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 397 VLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 88877654 1123357888888887777776665543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=264.24 Aligned_cols=385 Identities=13% Similarity=0.065 Sum_probs=259.4
Q ss_pred cCcchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHH----------------------hcCCCcchhHHHHHHHHHHHHHH
Q 009617 98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAK----------------------DLGIAENTVLQGWIVSSLLAGAT 155 (531)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~~~~~s~~~~~~~ 155 (531)
..+.++.++.+++++....+.++...+...+.+.+ |++++..+. |++.+.+.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHH
Confidence 34556778888888888899999999999888877 789999888 999999999999
Q ss_pred HHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh--chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHH
Q 009617 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233 (531)
Q Consensus 156 i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 233 (531)
+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.||+|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999998887554 568889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc-cccchhHHHHhCChHHHHHHHHHHhCccchHH
Q 009617 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSE 312 (531)
Q Consensus 234 ~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (531)
+...+..+|.++++++++.+.+...|||+.|++.++++++..+.+++ .+|+|+.. +...++.++..+
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~i~---------- 238 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEKKYIN---------- 238 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHHHHHH----------
Confidence 99999999999999999988754249999999999988776655544 45666421 111111000000
Q ss_pred HHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhHH-----------
Q 009617 313 VMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVAA----------- 380 (531)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~----------- 380 (531)
+..++++.+.+.+..++++++++..+...+..+.... .+..+..|.|.++ +..|++....+
T Consensus 239 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~ 311 (465)
T TIGR00894 239 ---SSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAW 311 (465)
T ss_pred ---hhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHH
Confidence 0000111111223457788887665555443322222 2445555666555 44677654322
Q ss_pred ---HHHHHHhhhcCccHHH--------HHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccc
Q 009617 381 ---SALVGAANVFGRKNLL--------TFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALL 449 (531)
Q Consensus 381 ---~~~~~~~~~~gr~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (531)
...+.++||+++|+.. ..+......+..++.... ........++...+...+ ..+..+.....
T Consensus 312 i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~ 385 (465)
T TIGR00894 312 LCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-----LSAAFYLTIIILTLANAV-SSGPLAGVLIN 385 (465)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCchHHHHHHHHHHHHH-hhhhhhhhhhc
Confidence 2233457887543211 111111111111111110 011122222222222222 22222333334
Q ss_pred cccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh---ccchhhHHHHHHHHHHHHHhhe
Q 009617 450 LPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF---GISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 450 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~ 510 (531)
..|..| +.+|.+.|+.+..+.++++++|.+.|.+.+.. +|...|.+.+++.+++.++...
T Consensus 386 ~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 386 SLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 557766 58999999999999999999999999987653 3677888888777777665544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=254.97 Aligned_cols=369 Identities=20% Similarity=0.266 Sum_probs=252.5
Q ss_pred chhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHH
Q 009617 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (531)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (531)
+.+..+..+++..+..+++....++..|.+.+++|.+..+. +++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34556666677777888888888889999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchh
Q 009617 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+. .||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~ 170 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-FGW 170 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888754 789
Q ss_pred HHHHHHhHHHHHH-HHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccch
Q 009617 261 RTMFGLAAIPSIL-LALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339 (531)
Q Consensus 261 r~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (531)
++.|++.+++.++ ..+..+++||++++...+ +.++..+..++.......+.. .+..++.+..+..+..++.+++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGKT 248 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcchh
Confidence 9999998765544 444555678887654433 222222222211110000000 0000000000111112233444433
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHH
Q 009617 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAA 405 (531)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~ 405 (531)
.+.......... .....+.....+.|++.++.|.+.... ....+.+.||+++|+... ...+..+
T Consensus 249 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 326 (398)
T TIGR00895 249 ARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHH
Confidence 333332222222 222334455666777777777765422 223344689999884433 3333333
Q ss_pred HHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 009617 406 SMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSV 484 (531)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~ 484 (531)
...++.... .+....+...++.+.+.+ ...+...+++.|.+|++.|+++.|+.+.+..+|.+++|.+.|.+
T Consensus 327 ~~~~~~~~~-------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 327 FAVLVGSTL-------FSPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHh-------hCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 333322210 022233333344444433 23455666899999999999999999999999999999999875
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=262.30 Aligned_cols=379 Identities=22% Similarity=0.194 Sum_probs=268.7
Q ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhh
Q 009617 131 AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGI 210 (531)
Q Consensus 131 ~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 210 (531)
.+.+..+.... .+..+++++|..+|++++|+++||+|||++++.++++..++.+++++++|++.+++.|++.|++.++
T Consensus 110 ~~~~c~~~~~~--~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 110 WNLVCDSSTLV--ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred hceeeCcHhHH--HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccc
Confidence 35566666666 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcccccchhHHHH
Q 009617 211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290 (531)
Q Consensus 211 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~ 290 (531)
....+..+++|++++++|+.+..+ ......|+.+++..++++.. +||+.+++..+++++.++..++.||+|+|+..
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~ 263 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLS 263 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHH
Confidence 999999999999999999999999 66666667777777777763 79999999999998877776667899999999
Q ss_pred hCChHHHHHHHHHHhCcc----chHHHH-H--HHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHH
Q 009617 291 QGKKSEAEKSIQTLYGKE----RVSEVM-L--DLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVY 363 (531)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~----~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (531)
+++.+++.+.+++..+.+ ...... . ..+.......+++..+.++++.+..+...+...+........++....
T Consensus 264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~ 343 (521)
T KOG0255|consen 264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL 343 (521)
T ss_pred cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 999999988888765322 111111 1 111122222234456888888764333333222222211111222222
Q ss_pred hHHHHHHHcCCChh-----------hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHH
Q 009617 364 YSTSVFRSVGIESD-----------VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTV 432 (531)
Q Consensus 364 ~~~~~~~~~g~~~~-----------~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (531)
.....|.+.. ..........|++|||.....+..+..++++..++..... ......+...
T Consensus 344 ----~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 414 (521)
T KOG0255|consen 344 ----NVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL-----GGWLHWILPL 414 (521)
T ss_pred ----hhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc-----hhHHHHHHHH
Confidence 1222222222 1122223457889999999999999999998888753211 1012222233
Q ss_pred HHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheec
Q 009617 433 LYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNV 512 (531)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 512 (531)
+..++.+.++... +.+..|++|+..|..+.+.......++++++|.+...... ......+..++....+..++...++
T Consensus 415 ~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l 492 (521)
T KOG0255|consen 415 LGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLL 492 (521)
T ss_pred HHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcC
Confidence 3333333334434 5689999999999999999999999999999988755443 3323333335666677777777889
Q ss_pred ccCCCCCHHHHHHh
Q 009617 513 VETKGRSLEEIERA 526 (531)
Q Consensus 513 ~~~~~~~~~~~~~~ 526 (531)
||++.+.+.+..++
T Consensus 493 pet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 493 PETKGKPLPGTLLD 506 (521)
T ss_pred cccCCCCCchhHHH
Confidence 99999887554433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-30 Score=252.94 Aligned_cols=356 Identities=17% Similarity=0.105 Sum_probs=254.5
Q ss_pred CcchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhh
Q 009617 99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (531)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 178 (531)
.++.+.....+.+..+...+....+.+.+|.+.+++|.+..+. ++..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 85 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV 85 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 4566777778888888888888999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCc
Q 009617 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL 258 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 258 (531)
++.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|++++++......+|..+||.+++.+.+. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~ 164 (406)
T PRK15402 86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV-L 164 (406)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence 999999999999999999999999999999988888899999999999999999999888889999999999888754 7
Q ss_pred hhHHHHHHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhcc
Q 009617 259 WWRTMFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS 337 (531)
Q Consensus 259 gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (531)
+||+.|++.+++.++..+.. +..||+++.. +++.+..+ ...+++.++++
T Consensus 165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------------------------~~~~~~~~~~~ 214 (406)
T PRK15402 165 PWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLSLKE---------------------------LGRDYKLVLKN 214 (406)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cccccHHH---------------------------HHHHHHHHHcC
Confidence 89999999888876655543 3457664311 00000000 01123455666
Q ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHHcCCChhhHH--------------HHHHHHhhhcCccHHHHHHhHH
Q 009617 338 RYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FRSVGIESDVAA--------------SALVGAANVFGRKNLLTFSFTG 402 (531)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~~~~~~ 402 (531)
+.++...+...+.... ......+.|.+ .+..|.+....+ ...+.+.||+++|+.+..+.++
T Consensus 215 ~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~ 290 (406)
T PRK15402 215 RRFVAGALALGLVSLP----LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWP 290 (406)
T ss_pred cHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6555444433322221 12222333433 344666654221 2223457999999998888877
Q ss_pred HHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 009617 403 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFL 482 (531)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 482 (531)
..++.+++....... .....+.++..++++.+.+... +......... +++++|++.++++....++..+++.+.+
T Consensus 291 ~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~ 365 (406)
T PRK15402 291 MVAGLLLAALATVIS---SHAYLWLTAGLSLYAFGIGLAN-AGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSK 365 (406)
T ss_pred HHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHHHHHHh-hhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665532111 1122233334444444444322 2222233333 3478999999999999999999999999
Q ss_pred HHHHhhccchhhHH
Q 009617 483 SVVNKFGISTVYLG 496 (531)
Q Consensus 483 ~~~~~~g~~~~~~~ 496 (531)
.+.+..+.......
T Consensus 366 ~l~~~~~~~~~~~~ 379 (406)
T PRK15402 366 HAYLGGGNGLFNLF 379 (406)
T ss_pred hcccCCchHHHHHH
Confidence 99887775443333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=255.27 Aligned_cols=369 Identities=19% Similarity=0.165 Sum_probs=254.8
Q ss_pred HHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHH
Q 009617 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (531)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 185 (531)
+..++++.+...++...+++.+|.+.+++|.+..+. +++.+.+.++..++.+++|+++||+|||++++.+.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 344566677788888888899999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHH
Q 009617 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (531)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~ 265 (531)
++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.++.....++|..+||.+++.+.+. .|||+.|+
T Consensus 90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-~gw~~~f~ 168 (471)
T PRK10504 90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-ASWHWIFL 168 (471)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-ccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998854 78999999
Q ss_pred HhHHHHHHHHHHhcc-cccchhHHHHhCChHHHHHHHH---------HHhCccc---hHHHH-----------HHHHHhc
Q 009617 266 LAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQ---------TLYGKER---VSEVM-----------LDLTNAG 321 (531)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~-----------~~~~~~~ 321 (531)
+.....++..+.... .|+.+. .+.+.+....... ...+.+. ..... .....++
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (471)
T PRK10504 169 INIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHA 245 (471)
T ss_pred HHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 987776554444433 344332 1111111110000 0000000 00000 0000001
Q ss_pred cCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhHH--------------HHHHHH
Q 009617 322 QGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVAA--------------SALVGA 386 (531)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~--------------~~~~~~ 386 (531)
....++..+. ++++++.+.......++.... +....++.|++++. .|.+....+ ...+.+
T Consensus 246 ~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 320 (471)
T PRK10504 246 RNNNRALFSL-KLFRTRTFSLGLAGSFAGRIG----SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV 320 (471)
T ss_pred hcCCCCccCH-HHhcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222233 467777766655444433322 33445556666653 566654222 223446
Q ss_pred hhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHH
Q 009617 387 ANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS 466 (531)
Q Consensus 387 ~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 466 (531)
.||+|+|+.+..+.++.++..+++.+.. .........+...+.+.+.+.... ....+..+..|++.++.++|+.
T Consensus 321 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~ 394 (471)
T PRK10504 321 VNRFGYRRVLVATTLGLALVSLLFMLVA-----LLGWYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLL 394 (471)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHhcc-----ccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHH
Confidence 8999999999888887777766554421 011111112222233333333223 3344677888999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhccc
Q 009617 467 LGMHWISNFVIGLYFLSVVNKFGIS 491 (531)
Q Consensus 467 ~~~~~~g~~i~~~~~g~~~~~~g~~ 491 (531)
++...+|..+++.+.|.+.+..|+.
T Consensus 395 ~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 395 SMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999998877753
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=258.00 Aligned_cols=391 Identities=12% Similarity=0.075 Sum_probs=250.7
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
++..+..+.+.....+.++..+....|.+++ +|++.++. +++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 3555666666677777777777778888876 59999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q 009617 182 AAGAFLCATA----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257 (531)
Q Consensus 182 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 257 (531)
+++.++.++. ++++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..+++.+.+......
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 9998887764 467788899999999999988989999999999999999999999999999988887765543333
Q ss_pred chhHHHHHHhHHHHHHHH-HHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccc-hhhhh
Q 009617 258 LWWRTMFGLAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAG-WFDLF 335 (531)
Q Consensus 258 ~gwr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 335 (531)
.+||+.|++.++++++.. +..+++||+|+....++ .+.. +++.. +. ..++.+.+.+.+.. .+.++
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~-~~----~~~~~~~~~~~~~~~~~~~~ 248 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP--IEEY------RNDYP-DD----YNEKAEQELTAKEIFMQYVL 248 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC--chhc------ccccc-cc----cccccccccchHHHHHHHHc
Confidence 689999999988876644 44555687765311000 0000 00000 00 00000000000111 12355
Q ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhH--------------HHHHHHHhhhcCccHHHHHHh
Q 009617 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--------------ASALVGAANVFGRKNLLTFSF 400 (531)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~ 400 (531)
+++..+...+...+... .......|.|.++++ .|++.... ....+.+.||+++++....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~ 324 (438)
T TIGR00712 249 PNKLLWYIAIANVFVYL----LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGV 324 (438)
T ss_pred cCchHHHHHHHHHHHHH----HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHH
Confidence 66655554333322222 123444556666554 56665422 222233589986433222222
Q ss_pred HHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHH-HHHHH
Q 009617 401 TGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISN-FVIGL 479 (531)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~~ 479 (531)
....+..+....... ....+........+.++.+. .+..........|.+|++.|++++|+.+..+++++ +++|.
T Consensus 325 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~ 400 (438)
T TIGR00712 325 FFMTLVTIAVIVYWM---NPAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 400 (438)
T ss_pred HHHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcch
Confidence 222111111111000 00111121222222222111 11111222356789999999999999999988875 68999
Q ss_pred hhHHHHHhhccchhhHHHHHHHHHHHHHhheecccCC
Q 009617 480 YFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETK 516 (531)
Q Consensus 480 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (531)
+.|.+.|..|+...+.+.+++++++.+..+..++|.|
T Consensus 401 l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 401 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998888888888777777677655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-31 Score=260.32 Aligned_cols=379 Identities=15% Similarity=0.101 Sum_probs=244.9
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
.|.++..+++...........++...|.+.+++|.+.++. +++.+.+.++..++.+++|+++||+|||++++.+.+++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA 94 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence 3556666666655555555567778999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHH-HHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchh
Q 009617 182 AAGAFLCATAQSVQTMII-GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
++++++++++++++.+++ .|++.|++.+...+....++.++++ ++|++++++.+.+..+|..++|.+++.+.+. .||
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-~gw 172 (455)
T TIGR00892 95 SLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES-FGW 172 (455)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hCh
Confidence 999999999999998875 5699999998777777888899996 6799999999999999999999999888754 799
Q ss_pred HHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchh
Q 009617 261 RTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW 340 (531)
Q Consensus 261 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (531)
|+.|++.+++.++..+..+++.+.+... .+.+.++.. ........+ +.+.....++..+....++++++.+
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQ-RVSKSKSKE----GLPPDGSTK----KLSKKSTAEKINRFLDFSLFTHRGF 243 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccc-ccccccccc----cCCCCCccc----cccccchhhhhhhhcchHHhcCchH
Confidence 9999999988765554443332221100 000000000 000000000 0000000000001111245666655
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHH--------------HHHHhhhc--CccHHHHHHh--HH
Q 009617 341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASA--------------LVGAANVF--GRKNLLTFSF--TG 402 (531)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~--gr~~~~~~~~--~~ 402 (531)
+.......+.... +.....+.+.+.++.|++....+.. .+.+.||. ++++...+.. ++
T Consensus 244 ~~~~~~~~l~~~~----~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 244 LVYLSGNVIMFLG----FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred HHHHHHHHHHHHH----ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 5444433322221 2233344455556677765533222 22346653 3333333222 22
Q ss_pred HHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 009617 403 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFL 482 (531)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 482 (531)
.+++.+++... .+.+..++..++.+.+++ ...+...+++.|.+|++++++++|+++...++|++++|.+.|
T Consensus 320 ~~l~~ll~~~~--------~~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G 390 (455)
T TIGR00892 320 NGLTHLLCALA--------GDYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAG 390 (455)
T ss_pred HHHHHHHHHHh--------chHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccccee
Confidence 22222222211 122333333444444433 334455567889999999999999999999999999999999
Q ss_pred HHHHhhc-cchhhHHHHHHHHHHHH
Q 009617 483 SVVNKFG-ISTVYLGFATVCLLAVL 506 (531)
Q Consensus 483 ~~~~~~g-~~~~~~~~~~~~~~~~~ 506 (531)
.+.+..| |...|.+.+++.+++.+
T Consensus 391 ~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 391 RLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred eeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999874 88888887776666554
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-29 Score=243.91 Aligned_cols=346 Identities=13% Similarity=0.117 Sum_probs=244.8
Q ss_pred HHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHH
Q 009617 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (531)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 185 (531)
+..++++.+.........++.+|.+.+++|.|..+. |++.+++.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677778888899999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHH
Q 009617 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (531)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~ 265 (531)
+++++++|++.+++.|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.+++.+.+. ..|... +
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~-~ 163 (381)
T PRK03633 86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE-LMSVLP-W 163 (381)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccchHH-H
Confidence 99999999999999999999999988888888888999999999999999999999999999999988753 222222 2
Q ss_pred HhHHHHHHHH-HHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHH
Q 009617 266 LAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVS 344 (531)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (531)
..++...... +.....++++. ++ ++..+.++.++++.++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-----~~--------------------------------~~~~~~~~~~~~~~~~~~~ 206 (381)
T PRK03633 164 VTGLVLAAILPLLFTRILNQQA-----EN--------------------------------HDSTSIWPMLKLRQARLGV 206 (381)
T ss_pred HHHHHHHHHHHHHHhcccCCCC-----CC--------------------------------CCCCCHHHHHHhcchHHHH
Confidence 2222221111 11111111100 00 0011234445555444332
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHH--------------HHHHHhhhcCccHHHHHHhHHHHHHHHHH
Q 009617 345 VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAAS--------------ALVGAANVFGRKNLLTFSFTGMAASMLLL 410 (531)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------~~~~~~~~~gr~~~~~~~~~~~~~~~~~~ 410 (531)
........ .+.....+.|.+.++.|.+....+. ..+.+.||+++|+.+..+..+..++.+.+
T Consensus 207 ~~~~~~~~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 282 (381)
T PRK03633 207 NGCIISGI----VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM 282 (381)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 22222111 1223334566677777776553222 12335899999998887777666655443
Q ss_pred HHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhcc
Q 009617 411 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGI 490 (531)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~ 490 (531)
.. . ........+++.+. ....|.....+.|..|+++++.+.+..+...++|++++|.+.|.+.|..|+
T Consensus 283 ~~----------~-~~~~~~~~l~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~ 350 (381)
T PRK03633 283 LS----------Q-AAMAPALFILGAAG-FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD 350 (381)
T ss_pred hh----------h-HHHHHHHHHHHHHH-HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 21 0 11111222222222 234566666778888888888888898888999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHh
Q 009617 491 STVYLGFATVCLLAVLYI 508 (531)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ 508 (531)
...|.+.+.+.++..+..
T Consensus 351 ~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 351 NLLFIMIASVSFIYLLML 368 (381)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 888888877776665443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=255.13 Aligned_cols=368 Identities=18% Similarity=0.190 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 184 (531)
++..++++.+...++....++.+|.+.+++|.+..+. +++.+.+.++..++.+++|+++||+|||++++.+.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 4556677888888999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHH
Q 009617 185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (531)
Q Consensus 185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f 264 (531)
.+++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|..+||.+++.+.+. .+||+.|
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~w~~~f 159 (485)
T TIGR00711 81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-YHWRWIF 159 (485)
T ss_pred HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-cCceehh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998854 7999999
Q ss_pred HHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHH------------HHHHhCcc--chHHHH-----------HHHH
Q 009617 265 GLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKS------------IQTLYGKE--RVSEVM-----------LDLT 318 (531)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~------------~~~~~~~~--~~~~~~-----------~~~~ 318 (531)
++.++++++..+.. +++||+++. .+++.+..... ..+-.... ...... ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV 237 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99888776554443 345654331 11111111000 00000000 000000 0000
Q ss_pred HhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCChhhH--------------HHHH
Q 009617 319 NAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVA--------------ASAL 383 (531)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~--------------~~~~ 383 (531)
.+. ..+++..-.++++++.+....+...+.... +....++.|.+++ ..|++.... ....
T Consensus 238 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 311 (485)
T TIGR00711 238 WEL--TDDNPLVDLRLFKYRNFTIGCVYMSLLGLG----LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIA 311 (485)
T ss_pred HHH--cCCCCccCHHHHcCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 111111223466666655544433333222 2333445555554 357765422 2223
Q ss_pred HHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHH
Q 009617 384 VGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 463 (531)
Q Consensus 384 ~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 463 (531)
+.+.||+|||+.+..+.++.+++..++.+... .............+.+.+.+....+... ...+..|+++++++.
T Consensus 312 g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~~~~-~~~~~~~~~~~g~~~ 386 (485)
T TIGR00711 312 GRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMPLTT-IALSGLPPHKIARGS 386 (485)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHhHHH
Confidence 34589999999988888777777766552210 1112222333334444444433334443 556778999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhh
Q 009617 464 ALSLGMHWISNFVIGLYFLSVVNKF 488 (531)
Q Consensus 464 g~~~~~~~~g~~i~~~~~g~~~~~~ 488 (531)
|+.++.+.+|+.+++.+.+.+.++.
T Consensus 387 ~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 387 SLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=252.84 Aligned_cols=360 Identities=14% Similarity=0.117 Sum_probs=237.4
Q ss_pred HHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh
Q 009617 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA 191 (531)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 191 (531)
.++...+++..+++..|.+.+++|.+..+. +++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 345666778888889999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHH-HhhcccCCCCchhHHHHHHhHHH
Q 009617 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL-VAGLPLAGNPLWWRTMFGLAAIP 270 (531)
Q Consensus 192 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~~~~l~~~~~gwr~~f~~~~~~ 270 (531)
++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++ ++++.+.+ ..+||+.|++.+++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-LYSWHWVFIVPGII 159 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-cCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 46655553 37899999998887
Q ss_pred HHHHH-HHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHH
Q 009617 271 SILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAAL 349 (531)
Q Consensus 271 ~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (531)
.++.. +..++.+|+++....++.+++. .++ ...+.+++++.....+..++.+++++..+...+...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
T TIGR00881 160 AIIVSLICFLLLRDSPQSCGLPPAEEMP---------NEE---PDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF 227 (379)
T ss_pred HHHHHHHHheeeCCCccccccCccccCc---------ccc---cccccccccccccchHHHHHHHHhcchHHHHHHHHHH
Confidence 75544 4444567665421110000000 000 0000000001111122234556666655554443333
Q ss_pred HHHHHhhhHHHHHHhHHHHH-HHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHh
Q 009617 350 FLFQQLAGINAVVYYSTSVF-RSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSF 414 (531)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 414 (531)
.... ......+.+.++ +..|++.... ....+.+.||..+++...............+....
T Consensus 228 ~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (379)
T TIGR00881 228 VYVV----RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW 303 (379)
T ss_pred HHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 3222 223333444444 4456665422 22233457876333222221111111111111110
Q ss_pred hcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhh
Q 009617 415 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVY 494 (531)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 494 (531)
. ....+.....+...+.+. ...+..+....+..|.+|++.|+++.|+.+.+..+|+.++|.+.|.+.+..||+..|
T Consensus 304 ~---~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 304 L---NPAANPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred c---CcchhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 0 001111222222222222 222333344457889999999999999999999999999999999999999987654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-29 Score=243.13 Aligned_cols=360 Identities=16% Similarity=0.103 Sum_probs=238.8
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
......+.+..+...+....+.|.+|.+.+++|.+..+. ++..+++.+++.++++++|+++||+|||++++.+.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 92 (413)
T PRK15403 15 LFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFT 92 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHH
Confidence 344445566667777888999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~ 262 (531)
++++++++++|++.++++|+++|++.+...+....++.|++++++|+++++++..+..+|..+||++++.+.+. .|||+
T Consensus 93 ~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-~gw~~ 171 (413)
T PRK15403 93 LACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-VHWKV 171 (413)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHH
Confidence 99999999999999999999999998876677778899999999999999999999999999999999988743 79999
Q ss_pred HHHHhHHHHHHHHHH-hcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhH
Q 009617 263 MFGLAAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
.|++.+++.++..+. .+++||+++. ++++.+... ....++.+++++..+
T Consensus 172 ~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~~~~---------------------------~~~~~~~ll~~~~~~ 221 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFSAKS---------------------------VLRDFRNVFRNRLFL 221 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCChHH---------------------------HHHHHHHHHcCHHHH
Confidence 999999887665554 4457876531 111000000 011345566676665
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhHHHHH----------HHH----hhhcCccHHHHHHhHHHHHH
Q 009617 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVAASAL----------VGA----ANVFGRKNLLTFSFTGMAAS 406 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~----------~~~----~~~~gr~~~~~~~~~~~~~~ 406 (531)
...+...+... .+.....+.|.++++ .|++....+... ..+ .++..+++.......+..++
T Consensus 222 ~~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 222 TGAATLSLSYI----PMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHH----HHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 54444333222 123344445555544 477665322211 111 22222333332222333333
Q ss_pred HHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 407 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
.+++....... .......++..++++.+.+... |......-.. ....+|++.++.+.....+..+++.+.+++.+
T Consensus 298 ~~l~~~~~~~~---~~~~~~~~~~~~l~~~G~~~~~-p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~ 372 (413)
T PRK15403 298 LALLIVGNLLW---PHVWLWSVLGTSLYAFGIGLIF-PTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWF 372 (413)
T ss_pred HHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHHh-HHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332221110 1122222334444444444322 2222111111 12236999999999999999999999998776
Q ss_pred hhccchhhHHHHHHHHHHH
Q 009617 487 KFGISTVYLGFATVCLLAV 505 (531)
Q Consensus 487 ~~g~~~~~~~~~~~~~~~~ 505 (531)
. +-...|...++++.+..
T Consensus 373 ~-~~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 373 N-GGRLPFHLLAVVAGVIV 390 (413)
T ss_pred c-CCchHHHHHHHHHHHHH
Confidence 6 54666666555544433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=244.13 Aligned_cols=339 Identities=13% Similarity=0.056 Sum_probs=243.8
Q ss_pred HHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH
Q 009617 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (531)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 189 (531)
..+.+...+......+.+|.+..+++.+..+. +++.+++.+++.++++++|+++||+|||++++.+.++.+++.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 34555566667777788899999999999999 9999999999999999999999999999999999999999998888
Q ss_pred Hhc-----hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHH
Q 009617 190 TAQ-----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (531)
Q Consensus 190 ~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f 264 (531)
+.+ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++||++++.+.+. .|||+.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~g~~~~~ 161 (365)
T TIGR00900 83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-LGIKWAI 161 (365)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHH
Confidence 887 9999999999999999999999999999999999999999999999999999999999998754 7899999
Q ss_pred HHhHHHHHHHHHHhccc--ccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHH
Q 009617 265 GLAAIPSILLALGMGLS--PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (531)
++.++..++..+..+.+ ||+++. ++++..++..+ + .+..++.+++++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------~----------~~~~~~~~~~~~~~~~ 214 (365)
T TIGR00900 162 WVDAVGFAISALLIVSVRIPELAAS----EIQALSNAVLR-------------D----------TREGIKFVLKNPLLRT 214 (365)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCc----cccccchhHHH-------------H----------HHhHHHHHHcCcHHHH
Confidence 98887766554444333 332210 00000000000 0 0123455666666555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHH
Q 009617 343 VSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASM 407 (531)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~ 407 (531)
......+..... ......+.|++.++ .|.+.... ....+.+.||.+|++....+..+.+++.
T Consensus 215 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 291 (365)
T TIGR00900 215 LLLLALLFNLVF---APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAI 291 (365)
T ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 444433332221 12222445555554 56654422 2222345789999988887766666665
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009617 408 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 487 (531)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 487 (531)
+.+.... + +.+...+..++.+.+.+. ..+....+..|..|++.|+++.|+.+...+++..++|.+.|.+.|.
T Consensus 292 ~~~~~~~------~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 292 LVVGLTP------P-NFPLFLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHhhc------h-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554421 1 122333333444444332 3455666889999999999999999999999999999999999987
Q ss_pred hc
Q 009617 488 FG 489 (531)
Q Consensus 488 ~g 489 (531)
.|
T Consensus 364 ~g 365 (365)
T TIGR00900 364 LG 365 (365)
T ss_pred cC
Confidence 54
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=244.91 Aligned_cols=183 Identities=21% Similarity=0.289 Sum_probs=170.9
Q ss_pred chhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHH
Q 009617 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (531)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (531)
..+..+.++++.+.++++++..+....+.+++.||++++.. |++.+.+.+.+.+++|+.|+++|||.||+++.+|..+
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 34567788899999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchh
Q 009617 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
|.++.++++++..||+++++|.+.|+|++...|.++.+++|.+|..+|++++++++.+..+|..+|.+.+..+.+....|
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765569
Q ss_pred HHHHHHhHHHHHHHHHHhcc-cccch
Q 009617 261 RTMFGLAAIPSILLALGMGL-SPESP 285 (531)
Q Consensus 261 r~~f~~~~~~~~~~~~~~~~-~~e~~ 285 (531)
||.|+..+++++++.++.++ .+|++
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCcc
Confidence 99999999999887766655 45544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=244.11 Aligned_cols=359 Identities=19% Similarity=0.146 Sum_probs=246.7
Q ss_pred HHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchh---HHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHH
Q 009617 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTV---LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (531)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 184 (531)
.++++.+...+......+.+|.+.+++|.+..+. ..|++.+++.++..++++++|+++||+|||+++..+.++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence 3455556667777788889999999999986652 2388999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHH
Q 009617 185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (531)
Q Consensus 185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f 264 (531)
.++++++++++.+++.|++.|++.+ ..+....++.|++++++|++++++...+..+|.+++|.+++.+.+. .+||+.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~ 175 (408)
T PRK09874 98 MVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS-YGLRPVF 175 (408)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHH
Confidence 9999999999999999999999865 5677788899999999999999999999999999999999988754 6899999
Q ss_pred HHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHH-
Q 009617 265 GLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV- 342 (531)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 342 (531)
++.+++.++..+.. ++++|+++.. ++++ ..+ .+ +..+.++++....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~-~~---------------------------~~~~~~~~~~~~~~ 223 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIRENFQPV---SKKE-MLH-MR---------------------------EVVTSLKNPKLVLS 223 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccc---cchh-hhH-HH---------------------------HHHHhCcCCchHHH
Confidence 99988776555443 3455543210 0000 000 00 0111222332222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCChh-----------------hHHHHHHHHhhhcCccHHHHHHhHHHH
Q 009617 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSV-GIESD-----------------VAASALVGAANVFGRKNLLTFSFTGMA 404 (531)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~-----------------~~~~~~~~~~~~~gr~~~~~~~~~~~~ 404 (531)
........... ......+.+.+..+. +.... ......+.+.||++||+.+..+.++..
T Consensus 224 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 299 (408)
T PRK09874 224 LFVTTLIIQVA----TGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSV 299 (408)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 21111111111 111112222222221 11110 111122346899999999888877666
Q ss_pred HHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 009617 405 ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSV 484 (531)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~ 484 (531)
++.+.+.... +.+...+...+.+.+.+ ...+....+..+..|++.+|+.+++.+.+..+|..++|.+.|.+
T Consensus 300 ~~~~~~~~~~--------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l 370 (408)
T PRK09874 300 LLLIPMSFVQ--------TPLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAI 370 (408)
T ss_pred HHHHHHHHhc--------cHHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHH
Confidence 6555443320 22222333333333333 23444445667778888999999999999999999999999999
Q ss_pred HHhhccchhhHHHHHHHHHHHHHhheecc
Q 009617 485 VNKFGISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 485 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
.+..|++..|.+.+++.+++.++.+...+
T Consensus 371 ~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 371 SANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887776655443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=240.22 Aligned_cols=332 Identities=18% Similarity=0.201 Sum_probs=233.3
Q ss_pred HHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHH
Q 009617 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT 190 (531)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 190 (531)
...+........+.+..|.+.+++|.++.+. +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 89 (385)
T TIGR00710 12 CLSILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL 89 (385)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 3345556777888899999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHH
Q 009617 191 AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (531)
Q Consensus 191 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~ 270 (531)
+++++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+. .+||+.|++.+++
T Consensus 90 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~~~~~~~~ 168 (385)
T TIGR00710 90 SNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-LSWHAIFAFLSLA 168 (385)
T ss_pred HccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988754 7899999998887
Q ss_pred HHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHH
Q 009617 271 SILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAAL 349 (531)
Q Consensus 271 ~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (531)
.++..+.. ++.||+++.. ++ ++..+ ....++++++++..+...+....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 217 (385)
T TIGR00710 169 GILLSALIFFILPETLPYE---AR-IQIST---------------------------YFETFLLLLKSKMFWGYALIYGA 217 (385)
T ss_pred HHHHHHHHHHhCCCCCCCc---cc-CCHHH---------------------------HHHHHHHHHcCchhHHHHHHHHH
Confidence 76555443 4456654311 00 00000 01123344555555444333222
Q ss_pred HHHHHhhhHHHHHHhHHHHH-HHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHh
Q 009617 350 FLFQQLAGINAVVYYSTSVF-RSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSF 414 (531)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 414 (531)
... .+.....+.|.++ +..|.+.... ....+.+.||+++|+.+..+..+..++.+++....
T Consensus 218 ~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (385)
T TIGR00710 218 SFG----GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITA 293 (385)
T ss_pred HHH----HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1223333344443 3566665422 22233458999999988887777776666554432
Q ss_pred hcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009617 415 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV 485 (531)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 485 (531)
.... ...........+.+.+.+. ..+....+..|..| +.++++.++.+.....++.+.+.+.+.+.
T Consensus 294 ~~~~---~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 294 ILGL---GSWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred Hhcc---chHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1110 0111222222233333332 33344446677777 57899999999998877777777777443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=238.79 Aligned_cols=346 Identities=12% Similarity=0.069 Sum_probs=228.8
Q ss_pred hhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH---H-hchHHHHHH
Q 009617 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---T-AQSVQTMII 199 (531)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~ 199 (531)
.+.++.+.+|+|.+..+. |++.+.+.+++.++++++|+++||+|||+++..+.++++++++++. + .++++.+++
T Consensus 33 ~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (402)
T TIGR00897 33 QGWLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILL 110 (402)
T ss_pred HHhHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHH
Confidence 345556668999999999 9999999999999999999999999999999999999999877653 3 357888999
Q ss_pred HHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHH-HHHHHhhcccCCCCchhHHHHHHhHHHHHHHHH-H
Q 009617 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-G 277 (531)
Q Consensus 200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~-~ 277 (531)
.|+++|++.+...+.....+.+++|+++|++++|+.+++.++|. ++++++++.+.+. .||+..++......++..+ .
T Consensus 111 ~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~ 189 (402)
T TIGR00897 111 FYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA-FGEMNTLWSALAFVLTGGVIA 189 (402)
T ss_pred HHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHHHHHHH
Confidence 99999999888878888889999999999999999999999996 6899998877744 6766555444333322222 2
Q ss_pred hcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhh
Q 009617 278 MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAG 357 (531)
Q Consensus 278 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (531)
.++.++.++.. .++++++. ++.+..++.+++++..+...+...+.. ..
T Consensus 190 ~~~~~~~~~~~-~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 237 (402)
T TIGR00897 190 LFSNKDIFTPQ-HMQTREKF---------------------------SELGKAATILFTNPNVLLGGMVRIINT----IG 237 (402)
T ss_pred HhccCCCCCcc-cccCCcch---------------------------hhHHHHHHHHHcChhHHHHHHHHHHHH----HH
Confidence 23334322100 00000000 000112345666665554433322222 22
Q ss_pred HHHHHHhHHHHHHHcCCChhhHH--------------HHHHHHhhhcCccHHHH-HHhHHHHHHHHHHHHHhhcccccCc
Q 009617 358 INAVVYYSTSVFRSVGIESDVAA--------------SALVGAANVFGRKNLLT-FSFTGMAASMLLLSLSFTWKVLAPY 422 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (531)
+.....+.|.+.++.|++..... ...+.++||++||+... .+.+..+++.+.+...... ...
T Consensus 238 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~---~~~ 314 (402)
T TIGR00897 238 LFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH---FGH 314 (402)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc---cCC
Confidence 44555677777788887765322 22334589999888764 3333333333332221100 011
Q ss_pred chhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHH
Q 009617 423 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCL 502 (531)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~ 502 (531)
+.+..++..++.+.+.+ ...+.. ....|..| ++|++++|+.+....++++++|.+.|.+.+..|+...+++.+++.+
T Consensus 315 ~~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~ 391 (402)
T TIGR00897 315 SFAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYV 391 (402)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 22223333333333333 233333 35567655 6899999999999999999999999999999999999998888877
Q ss_pred HHHHHhhe
Q 009617 503 LAVLYIAV 510 (531)
Q Consensus 503 ~~~~~~~~ 510 (531)
++.++..+
T Consensus 392 i~~~~~~~ 399 (402)
T TIGR00897 392 VSAFLTAF 399 (402)
T ss_pred HHHHHHHH
Confidence 77665543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=240.14 Aligned_cols=334 Identities=17% Similarity=0.158 Sum_probs=234.3
Q ss_pred HHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhc
Q 009617 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (531)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 192 (531)
.....+....+.|.+|.+.+++|.++.+. +++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 44445667788889999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
+++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+. .|||+.|++.+++.+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~~~~~~~~~~ 171 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-FGWQAIFATLFAITL 171 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Confidence 9999999999999998887788888999999999999999999888999999999999988754 799999999988887
Q ss_pred HHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHH
Q 009617 273 LLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLF 352 (531)
Q Consensus 273 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (531)
+..+..++++|+++. +++++ ++.+++++++++.++...+.......
T Consensus 172 ~~~~~~~~~~~~~~~----~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (401)
T PRK11043 172 LLILPTLRLKPSKKA----RKQSQ------------------------------DALTFKQLLKSKTYLGNVLIFAACSA 217 (401)
T ss_pred HHHHHHHHcCCCCCc----cccch------------------------------HHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 666655555554321 00000 01123444555444333222221111
Q ss_pred HHhhhHHHHHHhHHHHHHHcCCChhhHHHHH--------------HHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhccc
Q 009617 353 QQLAGINAVVYYSTSVFRSVGIESDVAASAL--------------VGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKV 418 (531)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (531)
.+.....+.|.+.++.|++....+... ..+.||+++|+......+..+++.+.+......
T Consensus 218 ----~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 291 (401)
T PRK11043 218 ----AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL-- 291 (401)
T ss_pred ----HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 123334456666777788765433221 224688898887665555554444433222111
Q ss_pred ccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccch
Q 009617 419 LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIST 492 (531)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~ 492 (531)
........++...+.+.+.+ ...+.......+..| +.+|++.|+.++....++..++.+.|.+.+......
T Consensus 292 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 292 -SHPSLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred -ccCcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 11122222232333333333 233444445556666 579999999999999999999999999876543333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=237.11 Aligned_cols=348 Identities=15% Similarity=0.084 Sum_probs=239.5
Q ss_pred HHHHhhHhHHhhhhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhh-hhhHHHHHHHHHHH
Q 009617 112 GAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCA 189 (531)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~ 189 (531)
.++..++..+...|.+|. +++++|.+..+. |++.+++.++..+.++++|.++||+||||.++ .+.++..++.++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 455666667777787775 678999999999 99999999999999999999999999988765 45666677788889
Q ss_pred HhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchh--HHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHh
Q 009617 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL--GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267 (531)
Q Consensus 190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~ 267 (531)
++++++.+++.|+++|.+.+...|...+++.|+.++++|++. .+....+.++|.++|+.+++.+.+. .+||+.|++.
T Consensus 83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~f~~~ 161 (375)
T TIGR00899 83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-FGFTVMFLTA 161 (375)
T ss_pred hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-cccHHHHHHH
Confidence 999999999999999988888888888889999887777654 5778888899999999999988754 7899999999
Q ss_pred HHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHH
Q 009617 268 AIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG 346 (531)
Q Consensus 268 ~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (531)
+++.++..+.. +++||.|+....+. ++.+.++.++++.++.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~ 207 (375)
T TIGR00899 162 ALAFVLCGVLVWLFLPSYPRGAPGAL----------------------------------TRLEVRGLLASRDTRLLFVA 207 (375)
T ss_pred HHHHHHHHHHHHHhCCCcccCccccc----------------------------------CcchhhhhhcCcchHHHHHH
Confidence 88776655444 44787654210000 00011223444444433333
Q ss_pred HHHHHHHHhhhHHHHHHhHH-HHHHHcCCChhhHH--------------HHHHHHhhhcCccHHHHHHhHHHHHHHHHHH
Q 009617 347 AALFLFQQLAGINAVVYYST-SVFRSVGIESDVAA--------------SALVGAANVFGRKNLLTFSFTGMAASMLLLS 411 (531)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~ 411 (531)
..+.... ......+.+ ++.+..|.+....+ ...+.+.||+|||+.+..+.++..+....+.
T Consensus 208 ~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 283 (375)
T TIGR00899 208 CTLMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLA 283 (375)
T ss_pred HHHHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 2222221 112222233 33455666654221 1223468999999988776665444443332
Q ss_pred HHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Q 009617 412 LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIS 491 (531)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~ 491 (531)
... +.+.......+.+.+.+. ..+....+..|..|+ +++++.|+.+...++|..++|.+.|.+.+..|++
T Consensus 284 ~~~--------~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~ 353 (375)
T TIGR00899 284 ADN--------SLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYH 353 (375)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 210 122222222233333332 234455577888875 5679999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhe
Q 009617 492 TVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~ 510 (531)
..|.+.+++++++.++..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 354 AVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred hHHHHHHHHHHHHHHHHhe
Confidence 9998888877777666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=234.61 Aligned_cols=331 Identities=28% Similarity=0.350 Sum_probs=260.3
Q ss_pred HHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHH
Q 009617 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (531)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 188 (531)
+++..+...++.....+..|.+.+++|.+..+. +++.+.+.++..++++++|+++||+|||+.+..+.++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 445566777778888889999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
.+.++++.+++.|++.|++.+...+....++.|++|+++|++.+++......+|..+++.+++.+.+. .+||+.|++.+
T Consensus 82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 160 (352)
T cd06174 82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILA 160 (352)
T ss_pred HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998754 67999999998
Q ss_pred HHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHH
Q 009617 269 IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAA 348 (531)
Q Consensus 269 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (531)
++.++..+..++++ +..+...+...
T Consensus 161 ~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~~ 185 (352)
T cd06174 161 ILGLLLALLLLFLL-------------------------------------------------------RLLLLLALAFF 185 (352)
T ss_pred HHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHHHH
Confidence 88776665554332 00111111111
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHc-CCChhh--------------HHHHHHHHhhhcCccH-HHHHHhHHHHHHHHHHHH
Q 009617 349 LFLFQQLAGINAVVYYSTSVFRSV-GIESDV--------------AASALVGAANVFGRKN-LLTFSFTGMAASMLLLSL 412 (531)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--------------~~~~~~~~~~~~gr~~-~~~~~~~~~~~~~~~~~~ 412 (531)
.. .........+.+.+..+. +.+... .....+.+.||++||+ .+..+.++..++.+.+..
T Consensus 186 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 186 LL----SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HH----HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 11 112334444555555443 555442 2233334589999999 888888888887777665
Q ss_pred HhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccch
Q 009617 413 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIST 492 (531)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~ 492 (531)
.. +.+...+...+.+.+.+ ...+....+..|..|+++|++.+|+.+....++..++|.+.|.+.+..+++.
T Consensus 262 ~~--------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~ 332 (352)
T cd06174 262 AP--------SLALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGG 332 (352)
T ss_pred hc--------cHHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Confidence 31 12333333444444433 4456667799999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhe
Q 009617 493 VYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~ 510 (531)
.+.+.+++.+++.++.+.
T Consensus 333 ~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 333 VFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 999988888887765543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=240.46 Aligned_cols=332 Identities=24% Similarity=0.324 Sum_probs=235.9
Q ss_pred HHHHHHhhHhHHhhhhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHH
Q 009617 110 CLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (531)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 188 (531)
+++.+...++.....+.+| .+.+++|.+..+. +++.+++.++..++++++|+++||+|||+++..+.++.+++.++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 4556677777888888999 8999999999999 999999999999999999999999999999999999999997777
Q ss_pred HHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
.++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+++.+.+ ..+||+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-~~~~~~~~~~~~ 158 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-YFGWRWAFLISA 158 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HCHHCCHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-cccccccccccc
Confidence 7778888999999999999999999999999999999999999999999999999999999999984 378999999999
Q ss_pred HHHHHHHHH-hcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCcc-chhhhhccchhHHHHHH
Q 009617 269 IPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEA-GWFDLFSSRYWKVVSVG 346 (531)
Q Consensus 269 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 346 (531)
++.++..++ .++++++++....+++.++..+ .+++.. .++.+++++..+...+.
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 214 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESPKESESK------------------------KPKPLKPGFKSLFKNPVLWILLIA 214 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred chhhhhhhhHhhhhhhcccccccccccccccc------------------------cccccccccccccccchhhhhhhh
Confidence 998777654 2444444331111111110000 000111 25556666544423332
Q ss_pred HHHHHHHHhhhHHHHHHhHHHH-HHHcCCC-hhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHH
Q 009617 347 AALFLFQQLAGINAVVYYSTSV-FRSVGIE-SDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASMLLL 410 (531)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~ 410 (531)
.....+ .+.....+.+.+ .+..|.+ .... ....+.+.||+++++..........+..+.+
T Consensus 215 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 290 (352)
T PF07690_consen 215 FFLFFF----VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGL 290 (352)
T ss_dssp HHHHHH----HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHH----HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 222221 133355555554 5666776 3322 2233446899998877776666655555554
Q ss_pred HHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHH
Q 009617 411 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIG 478 (531)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 478 (531)
.+.... .+....+....+.+.+.+ ...+....+..|..|++++|++.|+.+...+++++++|
T Consensus 291 ~~~~~~-----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 291 LLLPFS-----SSPVWLIIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CCSHHH-----CHHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-----hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 432111 122333334444444333 34556666899999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=234.72 Aligned_cols=337 Identities=20% Similarity=0.213 Sum_probs=226.0
Q ss_pred HHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH
Q 009617 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (531)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 189 (531)
....+........+.+.+|.+.+++|.+..+. ++..+++.++..+++++.|+++||+|||++++.+.++++++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 33444455555666689999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHH
Q 009617 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (531)
Q Consensus 190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~ 269 (531)
++++++.+++.|+++|++.+...+....++.|++++++|++++++.+....+|..++|.+++.+.+. .+||+.|++.++
T Consensus 87 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-~g~~~~~~~~~~ 165 (392)
T PRK10473 87 LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-FPWQSLFYTMAA 165 (392)
T ss_pred HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cChHHHHHHHHH
Confidence 9999999999999999999988999999999999999999999999999999999999999887644 789999999988
Q ss_pred HHHHHHHH-hcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHH
Q 009617 270 PSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAA 348 (531)
Q Consensus 270 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (531)
+.++..+. .+++||+++.. ++++... ....++.++++.++.......
T Consensus 166 ~~~i~~~~~~~~~~~~~~~~--~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 213 (392)
T PRK10473 166 MGILVLLLSLFILKETRPAR--APAASSK------------------------------PRENSESLLNRFFLSRLVITT 213 (392)
T ss_pred HHHHHHHHHHHHcCCCCCcc--cCCccch------------------------------HHHHHHHHhCHHHHHHHHHHH
Confidence 77655443 34466654210 0000000 001123344443333222222
Q ss_pred HHHHHHhhhHHHHHHhHHH-HHHHcCCChhhHH--------------HHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHH
Q 009617 349 LFLFQQLAGINAVVYYSTS-VFRSVGIESDVAA--------------SALVGAANVFGRKNLLTFSFTGMAASMLLLSLS 413 (531)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~ 413 (531)
+.... ......+.+. +.++.|++....+ ...+.+.||+|+|+.+..+.++..++.+++.+.
T Consensus 214 ~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 214 LSVTV----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHH----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1122223333 3345576654322 222345899999999888887777776666543
Q ss_pred hhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchh
Q 009617 414 FTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTV 493 (531)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~ 493 (531)
. .....+....+...+++.+... ....+..|.++|+ |.......++..+++.+.+.+.+..|+...
T Consensus 290 ~--------~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~ 355 (392)
T PRK10473 290 P--------SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAW 355 (392)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 1 1112222223333333322211 1223444544343 444455567777888888888888886554
Q ss_pred hHHHHH
Q 009617 494 YLGFAT 499 (531)
Q Consensus 494 ~~~~~~ 499 (531)
....+.
T Consensus 356 ~~~~~~ 361 (392)
T PRK10473 356 NMLIGI 361 (392)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=243.23 Aligned_cols=369 Identities=15% Similarity=0.127 Sum_probs=242.9
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhh-hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhh
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA 178 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 178 (531)
+..+.++..++...+....+...++- .+..+.+|++...+++ +.+.++|+++|+++++++|.+.||++..+.+....
T Consensus 41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~ 118 (495)
T KOG2533|consen 41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG 118 (495)
T ss_pred HHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH
Confidence 33455556666666666666655532 3445669999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC---
Q 009617 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG--- 255 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--- 255 (531)
+++++..++....+|++.+++.|++.|+.+++.+|....+++.||.++||++.++++.+..++|.++|++++..+.+
T Consensus 119 ~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~ 198 (495)
T KOG2533|consen 119 ILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG 198 (495)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999988532
Q ss_pred --CCchhHHHHHHhHHHHHHHHH-HhcccccchhH--HHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccc
Q 009617 256 --NPLWWRTMFGLAAIPSILLAL-GMGLSPESPRW--LFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAG 330 (531)
Q Consensus 256 --~~~gwr~~f~~~~~~~~~~~~-~~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (531)
...||||.|++.|+++++..+ .++++|+.|.. ...++++.-. .++.+ +..+....++.++..
T Consensus 199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~---~~~~~----------~~~~~~~~~~~~~~~ 265 (495)
T KOG2533|consen 199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV---VERLR----------ESPSGGIENKFKWKG 265 (495)
T ss_pred CCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH---HHHHH----------hccCCCcccccCHHH
Confidence 236899999999999977665 44558998862 1111110000 01100 000001111134456
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChh--------------hHHHHHHHHhhh----cC
Q 009617 331 WFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--------------VAASALVGAANV----FG 391 (531)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--------------~~~~~~~~~~~~----~g 391 (531)
+++.++++..+...+..++.... .+.+.+|.|.++.+ .|++.. ....+.+.++|| ..
T Consensus 266 ~~~a~~dp~vw~~~l~~~~~~lv----~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~ 341 (495)
T KOG2533|consen 266 FKEALKDPGVWPFSLCYFFLKLV----NYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFA 341 (495)
T ss_pred HHHHHhchhHHHHHHHHHHHhhc----cccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHH
Confidence 67777777776665554444433 55677788888877 335432 455566677999 45
Q ss_pred ccHHHHHHhHHHHHHH-HHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccc-cChhhhhHHHHHHHHH
Q 009617 392 RKNLLTFSFTGMAASM-LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEI-FASRIRAKAVALSLGM 469 (531)
Q Consensus 392 r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~ 469 (531)
+|........+..+.. +.+... .........++.+........++.....++. -+..++-+..++....
T Consensus 342 ~~~~~~~~~~~~~~~g~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~ 412 (495)
T KOG2533|consen 342 RRLLFIVFLCLYAIIGAISLLAA---------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDG 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcc
Confidence 5555544444333333 333221 1011111111111111111222333334444 3444555566666666
Q ss_pred HHHHHHHHHHhhHHHHHh-hccchhhHH
Q 009617 470 HWISNFVIGLYFLSVVNK-FGISTVYLG 496 (531)
Q Consensus 470 ~~~g~~i~~~~~g~~~~~-~g~~~~~~~ 496 (531)
.+.+++++|++....... +++...|..
T Consensus 413 ~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 413 TGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred hhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 677777777766554433 466667733
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=222.85 Aligned_cols=367 Identities=18% Similarity=0.139 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 184 (531)
.+.+..++.....+.+...+++.+.|.+|+|+|++|. +++.++..+...+..++.|.+.||+|.|++..+++++..+.
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP 92 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP 92 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence 4445555556666667788889999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHH---HHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch--
Q 009617 185 AFLCATAQSVQ---TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-- 259 (531)
Q Consensus 185 ~~~~~~~~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g-- 259 (531)
++..+++.+++ ++++.+++.|++ |+.+...+.++++||||+++|.++|++. ..|+|..+..+++..+... .+
T Consensus 93 ~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~-~g~~ 169 (417)
T COG2223 93 CLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA-FGFL 169 (417)
T ss_pred HHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH-HhhH
Confidence 99999986555 999999999998 4588899999999999999999999999 8899988877777776644 55
Q ss_pred -hHHHHHHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhcc
Q 009617 260 -WRTMFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS 337 (531)
Q Consensus 260 -wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (531)
|+....+..+..++..+.. +.+.|.|......++.. +..++.++++
T Consensus 170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~--------------------------------~~~~~~v~~~ 217 (417)
T COG2223 170 AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL--------------------------------PAQLKAVFSN 217 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc--------------------------------hhHHHHHhcC
Confidence 9999988888887655544 44555554311111100 0234455656
Q ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHHcCCChhhHHHHH--------------HHHhhhcCccHHHHHHhHH
Q 009617 338 RYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FRSVGIESDVAASAL--------------VGAANVFGRKNLLTFSFTG 402 (531)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~--------------~~~~~~~gr~~~~~~~~~~ 402 (531)
+..|.+.+.+...+. ++..+..+.+.+ ..++|.+...++... +.++||+|.++.+...+..
T Consensus 218 ~~~W~lsllY~~tFG----~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~ 293 (417)
T COG2223 218 KDTWLLSLLYFATFG----GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG 293 (417)
T ss_pred cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHH
Confidence 666665554443333 345555555544 456788776532222 2359999999999999988
Q ss_pred HHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 009617 403 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFL 482 (531)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 482 (531)
++++............ ...+....+...+......+.+...+.. ++...+| ++.|.+.|+...++.+|++.-|...|
T Consensus 294 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~l~~~~G~GnGsvfk-~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g 370 (417)
T COG2223 294 MALAAALLSLFLTGFG-HGGSFVVFVAVFLALFVFAGLGNGSVFK-MIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFG 370 (417)
T ss_pred HHHHHHHHHccccccc-cCcchHHHHHHHHHHHHHhccCcchhee-echHHHH-hhhhHHHHHHHHhccccccchhHHHH
Confidence 8888888776432111 0112333333344444444555554444 7788887 46899999999999999999999999
Q ss_pred HHHHhhc-cchhhHHHHHHHHHHHHHhheecccC
Q 009617 483 SVVNKFG-ISTVYLGFATVCLLAVLYIAVNVVET 515 (531)
Q Consensus 483 ~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (531)
...+.+| +...|+++..+.+++.+..+....+.
T Consensus 371 ~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 371 VSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 77888888888888888776655443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-28 Score=234.75 Aligned_cols=349 Identities=16% Similarity=0.126 Sum_probs=240.1
Q ss_pred HHhhHhHHhhhhhH-HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhc
Q 009617 114 ILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (531)
Q Consensus 114 ~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 192 (531)
+..........+.+ +++++++|.+..+. |++.+++.+++.+++++.|+++||+|||++++++.++.+++.++.++++
T Consensus 17 ~~~~~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~ 94 (395)
T PRK10054 17 LLLTIGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence 33344444544544 56778999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
+++.+++.|++.|.+.+...+....+..|.+++++|++++++.....++|.++||.+++.+.+ .+|+..|++.+++.+
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--QSINLPFWLAAICSA 172 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcHHHHHHHHHH
Confidence 999999999999988887888889999999999999999999999999999999999998873 689999998887776
Q ss_pred HHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHH
Q 009617 273 LLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFL 351 (531)
Q Consensus 273 ~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (531)
+..+.. +++||+++. +++++ . +..+.++.++++..+.......+..
T Consensus 173 i~~i~~~~~~~~~~~~----~~~~~-~----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (395)
T PRK10054 173 FPLVFIQIWVQRSEKA----IATET-G----------------------------SVWSPSVLLQDKALLWFTCSGFLAS 219 (395)
T ss_pred HHHHHHHHHHhccccc----cccch-h----------------------------hhhhhhhhccCceehHHHHHHHHHH
Confidence 654433 334544320 00000 0 0001134555555544443333222
Q ss_pred HHHhhhHHHHHHhHHHHHHHcCCChhhHH--------------HHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcc
Q 009617 352 FQQLAGINAVVYYSTSVFRSVGIESDVAA--------------SALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWK 417 (531)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (531)
............+.+.. .+.+.+....+ ...+...||.++|+.+..+.++..++.+.+...
T Consensus 220 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---- 294 (395)
T PRK10054 220 FVSGAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS---- 294 (395)
T ss_pred HHHHHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc----
Confidence 22111111112222211 12233222111 222334788888988888877777776655432
Q ss_pred cccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHH
Q 009617 418 VLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGF 497 (531)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~ 497 (531)
..+.+..++...+++.+.. ...|....++.+..|++.++++.+..+ ...+|..++|.+.|.++|..|+...|.+.
T Consensus 295 ---~~~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 295 ---GNSLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred ---chHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 0122223333334444432 234555567888899999999998765 57799999999999999999988888877
Q ss_pred HHHHHHHHHHhh
Q 009617 498 ATVCLLAVLYIA 509 (531)
Q Consensus 498 ~~~~~~~~~~~~ 509 (531)
+.+..+..++..
T Consensus 370 ~~~~~~~~~~~~ 381 (395)
T PRK10054 370 ALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHHH
Confidence 666666655554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=234.26 Aligned_cols=331 Identities=14% Similarity=0.073 Sum_probs=228.6
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
..+++.+++|.+..+. |++.+.+.++..+.++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|
T Consensus 33 ~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 110 (400)
T PRK11646 33 ISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSG 110 (400)
T ss_pred HHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4446789999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH-hcccccc
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGLSPES 284 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~-~~~~~e~ 284 (531)
++.+...+...+++.|++|+++|++++++......+|..+||.+++.+. . .|||+.|++.++..++..+. .++.||.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~-~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q-YDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9998888999999999999999999999999999999999999999987 3 79999999988777554433 3334542
Q ss_pred hhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHh
Q 009617 285 PRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYY 364 (531)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (531)
+. ++..+ +.+.+++++++++.+....+........ ......+
T Consensus 189 ~~----~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 230 (400)
T PRK11646 189 KL----STVRT------------------------------PVREGMTRVLRDKRFVTYVLTLTGYYML----AVQVMLM 230 (400)
T ss_pred cc----cccch------------------------------hhHHHHHHHHcCchHHHHHHHHHHHHHH----HHHHHHh
Confidence 11 00000 0011244455555444333322221111 1122345
Q ss_pred HHHHHHHcCCChhhHHHH--------------HHHHh-hhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHH
Q 009617 365 STSVFRSVGIESDVAASA--------------LVGAA-NVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVL 429 (531)
Q Consensus 365 ~~~~~~~~g~~~~~~~~~--------------~~~~~-~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (531)
.|.+.++.+.+....+.. ..... ||++.++.+..+.++.+++.+++.... +.....+
T Consensus 231 ~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~ 302 (400)
T PRK11646 231 LPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------NLQQLFT 302 (400)
T ss_pred hhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--------hHHHHHH
Confidence 566655544443321111 01122 344545555666666666655554321 1222222
Q ss_pred HHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc----cchhhHHHHHHHHHHH
Q 009617 430 GTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG----ISTVYLGFATVCLLAV 505 (531)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g----~~~~~~~~~~~~~~~~ 505 (531)
...+++.+.. ...|...+++.+..|+++||+++|+.+....+|..++|.+.|.+.+..+ ....+...+++++++.
T Consensus 303 ~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 303 LICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred HHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 2233333333 2335555688899999999999999999999999999999999998753 2344444444444444
Q ss_pred HH
Q 009617 506 LY 507 (531)
Q Consensus 506 ~~ 507 (531)
+.
T Consensus 382 ~~ 383 (400)
T PRK11646 382 LA 383 (400)
T ss_pred HH
Confidence 43
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=235.56 Aligned_cols=350 Identities=18% Similarity=0.194 Sum_probs=248.9
Q ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhch--HHHHHHHHHHHHhhh
Q 009617 131 AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS--VQTMIIGRVLAGIGI 208 (531)
Q Consensus 131 ~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~ 208 (531)
..+++.+..+. +++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++.+ ++.+++.|+++|++.
T Consensus 65 ~~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~ 142 (466)
T KOG2532|consen 65 AGEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ 142 (466)
T ss_pred CceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence 34678888888 99999999999999999999999999999999999999999999988754 457799999999999
Q ss_pred hhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc-cccchhH
Q 009617 209 GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPESPRW 287 (531)
Q Consensus 209 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~~ 287 (531)
|..+|+...+.+.|.|++||++..++..++..+|.+++..++|.+.+...||+++|++.++++++..+++++ ..|+|..
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999999999999999876689999999999999887776655 4666652
Q ss_pred HHHhCChHHHHHHHHHHhCccchHHHHHHHHHhc---cCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHh
Q 009617 288 LFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG---QGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYY 364 (531)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (531)
++...+ +|.+.+++.+ ..+++.+.+|+++++++..+.++++.+.... ++..+..|
T Consensus 223 ---h~~is~---------------~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~----~~~~l~~y 280 (466)
T KOG2532|consen 223 ---HPNISE---------------KELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNW----GFYLLLTY 280 (466)
T ss_pred ---CCCCCH---------------HHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 111111 1111111111 1122257899999999877776666544433 35556666
Q ss_pred HHHHHH-HcCCChh--------------hHHHHHHHHhhhcCc---------cHHHHHHhHHHHHHHHHHHHHhhccccc
Q 009617 365 STSVFR-SVGIESD--------------VAASALVGAANVFGR---------KNLLTFSFTGMAASMLLLSLSFTWKVLA 420 (531)
Q Consensus 365 ~~~~~~-~~g~~~~--------------~~~~~~~~~~~~~gr---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (531)
.|.+++ ..+++.. ......+.++||+-+ |..-.++....+++++.+.+. .
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~------~ 354 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT------S 354 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec------C
Confidence 666665 4566544 233334456888754 223334554455555544432 1
Q ss_pred CcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH---hhccchhhHHH
Q 009617 421 PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN---KFGISTVYLGF 497 (531)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~---~~g~~~~~~~~ 497 (531)
..+....++.+.+ ..++.....+-.+....+.. +++.+..+|+.+.+..+.++++|.+.|.+.. ...|+.+|++.
T Consensus 355 ~~~~~~a~~~l~~-~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~ 432 (466)
T KOG2532|consen 355 DEHRLLAVILLTI-AIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIA 432 (466)
T ss_pred CCcchHHHHHHHH-HHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHH
Confidence 1122222222222 22222222222221222323 4789999999999999999999999999984 34689999999
Q ss_pred HHHHHHHHHHhheec
Q 009617 498 ATVCLLAVLYIAVNV 512 (531)
Q Consensus 498 ~~~~~~~~~~~~~~~ 512 (531)
+++.+++.++..++-
T Consensus 433 a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 433 AGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHhchheeEee
Confidence 999999887665553
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=230.92 Aligned_cols=355 Identities=16% Similarity=0.043 Sum_probs=229.8
Q ss_pred HHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH
Q 009617 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (531)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 189 (531)
+++.+...+....+....+.+.++++.+..+. +++.+.+.+++.++++++|+++||+|||++++.+.+++++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 9 MAAQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 44455555544444556666789999998888 9999999999999999999999999999999999999999998888
Q ss_pred HhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHH
Q 009617 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (531)
Q Consensus 190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~ 269 (531)
++.+. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+.+ ..|+..+.+.+.
T Consensus 87 ~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~--~~~~~~~~i~~~ 161 (393)
T PRK11195 87 FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD--PHAEAALAVCAL 161 (393)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 77664 7889999999999999999999999999999999999999999999999999999885 348877777666
Q ss_pred HHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHH
Q 009617 270 PSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAAL 349 (531)
Q Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (531)
..++..+..+.+||++.... +++.+..+..++. ...++.+++++..+.......+
T Consensus 162 ~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~-----------------------~~~~~~l~~~~~~~~~~~~~~~ 216 (393)
T PRK11195 162 IYLLAALFNLFIPRLGARRP--GQSWNPIALLRDF-----------------------FHACRVLWRDKLGRFSLAGTTL 216 (393)
T ss_pred HHHHHHHHHhcCCCCccccc--ccCCCHHHHHHHH-----------------------HHHHHHHHhCchhHHHHHHHHH
Confidence 55544555566787653211 0100000000000 0112345555554443333222
Q ss_pred HHHHHhhhHHHHHHhHH-HHHHHcCCChhhHHHHH--------------HHHhhhcCccHHHHHHhHHHHHHHHHHHHHh
Q 009617 350 FLFQQLAGINAVVYYST-SVFRSVGIESDVAASAL--------------VGAANVFGRKNLLTFSFTGMAASMLLLSLSF 414 (531)
Q Consensus 350 ~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~--------------~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 414 (531)
.... .....+..+ +..+..|.+....+... +.+.||.++++.+..+. +.++..+.+...
T Consensus 217 ~~~~----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~- 290 (393)
T PRK11195 217 FWGA----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ- 290 (393)
T ss_pred HHHH----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-
Confidence 2211 111222222 22233465554322221 22346666666665553 333332222221
Q ss_pred hcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhh-hhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchh
Q 009617 415 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI-RAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTV 493 (531)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~ 493 (531)
.+.+...+...+.+.+.+....+. .+...+..|++. +|.+.++.+..++++..++..+.+.+ +..|....
T Consensus 291 -------~~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 361 (393)
T PRK11195 291 -------HSLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVV 361 (393)
T ss_pred -------hHHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHH
Confidence 022222333334444444333333 346667766554 79999999999999999999998855 67887777
Q ss_pred hHHHHHHHHHHHHHhhee
Q 009617 494 YLGFATVCLLAVLYIAVN 511 (531)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~ 511 (531)
+.+.+...+++..+.+.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 362 AVIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666555555544433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=236.51 Aligned_cols=360 Identities=18% Similarity=0.113 Sum_probs=243.0
Q ss_pred HHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-----cchhh-hhhhhHHHHHH
Q 009617 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRT-FQLDAVPLAAG 184 (531)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~ 184 (531)
+..+..+......++.+|...++.|.+.+++ +.. +.....+ ++.+++|+++||+ |||+. +..+.++.+++
T Consensus 19 ~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~ 94 (491)
T PRK11010 19 ILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVA 94 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHH
Confidence 3334455556677788999999999999888 776 4444444 6899999999999 99885 66777777788
Q ss_pred HHHHHHh---chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhH
Q 009617 185 AFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (531)
Q Consensus 185 ~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr 261 (531)
..++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+...|||
T Consensus 95 ~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr 174 (491)
T PRK11010 95 IAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ 174 (491)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 7777775 4788899999999999998899999999999999999999999999999999999999988875346999
Q ss_pred HHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhH
Q 009617 262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341 (531)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
..|++.+++.++..+..++.||+++.. +++++..+ ....+++++++++..+
T Consensus 175 ~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~~~--------------------------~~~~~l~~~~~~~~~~ 225 (491)
T PRK11010 175 GMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTLEQ--------------------------AVVAPLRDFFGRNNAW 225 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccc---ccccchhh--------------------------hHHHHHHHHHcCcCHH
Confidence 999999988776666555677765311 00000000 0011244555544444
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHH---------------HHHHhhhcCccHHHHHHhHHHHHH
Q 009617 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASA---------------LVGAANVFGRKNLLTFSFTGMAAS 406 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------~~~~~~~~gr~~~~~~~~~~~~~~ 406 (531)
.......++... ......+..+++.+..|++....+.. .+.++||+|+|+.+..+.++.++.
T Consensus 226 ~~ll~~~l~~~~---~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 226 LILLLIVLYKLG---DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333332222221 12223344455555677776633222 223589999988777666555554
Q ss_pred HHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 407 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
.+.+...... ..+........++.....+.+. +...++..+..+++.+++..|+.+....+|+.+++++.|.+.+
T Consensus 303 ~l~~~~l~~~----~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~ 377 (491)
T PRK11010 303 NAGYWLLSIT----DKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE 377 (491)
T ss_pred HHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333221110 1111111212222121222222 2334577788888899999999999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHHHhhee
Q 009617 487 KFGISTVYLGFATVCLLAVLYIAVN 511 (531)
Q Consensus 487 ~~g~~~~~~~~~~~~~~~~~~~~~~ 511 (531)
..||...|.+.+++++++.++....
T Consensus 378 ~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 378 AHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888887776665543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=233.22 Aligned_cols=354 Identities=16% Similarity=0.116 Sum_probs=238.3
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
+..+..+++..+..++.....++..|.+++++|+++.+. |++.+.+.+++.+++++.|+++||+|||+++..++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 344455566777888888889999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC----
Q 009617 183 AGAFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---- 255 (531)
Q Consensus 183 ~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---- 255 (531)
++++++ +++++++.++++|+++|+|.+...+....++.|+.++++|++.+++.+..+.+|..+|+++++.+..
T Consensus 103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~ 182 (438)
T PRK10133 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999875 5689999999999999999999999999999998877777778999999999999999988764320
Q ss_pred -------------CC--------chhHHHHHHhHHHH-HHHHHH-hcccccchhHHHHhCChHHHHHHHHHHhCccchHH
Q 009617 256 -------------NP--------LWWRTMFGLAAIPS-ILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSE 312 (531)
Q Consensus 256 -------------~~--------~gwr~~f~~~~~~~-~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (531)
.. .+||++|+....+. ++..+. ...+||.+. +++.++.
T Consensus 183 ~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~~~~--------------- 243 (438)
T PRK10133 183 HQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHSDAK--------------- 243 (438)
T ss_pred ccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccccccc---------------
Confidence 00 25666776444333 232222 222444221 0000000
Q ss_pred HHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCChhhHHH----------
Q 009617 313 VMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVAAS---------- 381 (531)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~---------- 381 (531)
..+.....+++++++.++...+..+++.... .....+..+++.+ ..|++....+.
T Consensus 244 -----------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~ 309 (438)
T PRK10133 244 -----------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQ---TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF 309 (438)
T ss_pred -----------ccchhhhHHHHHhCchHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Confidence 0001122445666666555444333333221 2222233334333 45777663332
Q ss_pred ----HHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChh
Q 009617 382 ----ALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR 457 (531)
Q Consensus 382 ----~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 457 (531)
..+.+.||+|+|+.+..+.++.++++++..+. .....+....+.+++.+ ...|..++...+..|+
T Consensus 310 vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~glg~~-~i~P~~~s~a~~~~~~- 378 (438)
T PRK10133 310 IGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQ- 378 (438)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHH-HHHHHHHHHHHcccch-
Confidence 22335899999999888776665555444321 11122333344444443 3556666677788775
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhHHHHHHHHH
Q 009617 458 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLL 503 (531)
Q Consensus 458 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~ 503 (531)
..+++.++..+ ..+|+.++|++.|.+.+..| .+..|++...+.+.
T Consensus 379 ~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 379 DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 46778888864 55788999999999999887 56666654443333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=235.03 Aligned_cols=347 Identities=18% Similarity=0.179 Sum_probs=227.6
Q ss_pred HHhhHhHHhhhhhHHHHHHhcC--CCcchhHHHHHHHH-----HHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHH
Q 009617 114 ILFGYHLGVVNGALEYLAKDLG--IAENTVLQGWIVSS-----LLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (531)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 186 (531)
+.+.+++..+++..+.+.+++. .++.+. +.+.+. .+++..+++++.|+++||+|||+++..+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 80 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLV--ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTL 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4567788888888888888865 344444 444433 3334457899999999999999999999999999999
Q ss_pred HHHHhchHH--------HHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC---
Q 009617 187 LCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG--- 255 (531)
Q Consensus 187 ~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--- 255 (531)
++++++++. .+++.|+++|++.+...+....++.|++++++|++..++...+..+|.+++++++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~ 160 (394)
T TIGR00883 81 LIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG 160 (394)
T ss_pred HHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999875 488999999999999999999999999999999999999999999999999888765431
Q ss_pred ----CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccch
Q 009617 256 ----NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW 331 (531)
Q Consensus 256 ----~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (531)
...+||+.|++.+++.++..+....++|++++...+++ +++.+.+.
T Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 210 (394)
T TIGR00883 161 DDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK------------------------------HKKKRGPI 210 (394)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc------------------------------cccccCCH
Confidence 23689999998877766655554556666542211000 01112334
Q ss_pred hhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhHH--------------HHHHHHhhhcCccHHH
Q 009617 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVAA--------------SALVGAANVFGRKNLL 396 (531)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~ 396 (531)
++.++++.+. ........+.... .+.....+.+.+. +..|.+..... ...+.+.||+|||+.+
T Consensus 211 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 211 RETLTKHRKP-FLLGLGLVIATTT-TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHHHhchHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 4555544311 1222222222222 2334444555555 55666554222 2233468999999977
Q ss_pred HHHhHHHHHHH-HHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHH-HHHHHHH
Q 009617 397 TFSFTGMAASM-LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL-GMHWISN 474 (531)
Q Consensus 397 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~ 474 (531)
.....+..+.. ..+.... ...+.+..+...++.+.+.+. ..+...+++.|.+|++.|+++.++.+ ....+|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~ 362 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMALL-----DSGSFTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG 362 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh
Confidence 65544433332 2221110 011222223333333333332 34455668899999999999999854 4456788
Q ss_pred HHHHHhhHHHHHhhc-cchhhHHHHHH
Q 009617 475 FVIGLYFLSVVNKFG-ISTVYLGFATV 500 (531)
Q Consensus 475 ~i~~~~~g~~~~~~g-~~~~~~~~~~~ 500 (531)
.++|.+.|.+.+..| +...++..+++
T Consensus 363 ~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 363 GFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred hHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 899999999999888 55555444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=231.23 Aligned_cols=341 Identities=13% Similarity=0.108 Sum_probs=241.0
Q ss_pred HHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHH
Q 009617 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185 (531)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 185 (531)
+.+++...+..++..+..++.+|.+++++|++..+. |++.+.+.+++.+++++.|++.||+|||++++.++++++++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 445667778888888898999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHH---hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC------
Q 009617 186 FLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN------ 256 (531)
Q Consensus 186 ~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------ 256 (531)
+++.. .++++.+++.|++.|+|.|...+....++.++.|+++|++++++.+...++|..+|+.+++.+...
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 88644 468999999999999999999999999999999999999999999999999999999998776421
Q ss_pred -------------------CchhHHHHHHhHHHHHHHHHHhcc--cccchhHHHHhCChHHHHHHHHHHhCccchHHHHH
Q 009617 257 -------------------PLWWRTMFGLAAIPSILLALGMGL--SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVML 315 (531)
Q Consensus 257 -------------------~~gwr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (531)
..+||++|++.+++.++..+...+ .||.++ ++ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~------------------- 217 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK------------------- 217 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc-------------------
Confidence 136999999998877665544433 333111 00 00
Q ss_pred HHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc--CCChh--------------hH
Q 009617 316 DLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV--GIESD--------------VA 379 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~--------------~~ 379 (531)
+.....+.+++++++.++...+..+++...+. ....+.+.+..+. +.+.. ..
T Consensus 218 --------~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~----~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vG 285 (410)
T TIGR00885 218 --------QISFSASLSRLARIRHYREGVIAQFFYVGVQI----MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFIS 285 (410)
T ss_pred --------cccchhhHHHHHhChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 00011123455666666555555444444332 2223334433333 22211 11
Q ss_pred HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhh
Q 009617 380 ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR 459 (531)
Q Consensus 380 ~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 459 (531)
..+.+.+.||+++|+.+.+..++..+..++.... .....+....+.+++.+. ..|..++...+..+++.+
T Consensus 286 R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---------~~~~~~~~l~~~glf~s~-~fp~i~sl~~~~~g~~~~ 355 (410)
T TIGR00885 286 RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---------GGHVGLYCLTLCSAFMSL-MFPTIYGIALKGLGQDTK 355 (410)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhh
Confidence 2223345899999998888777777666665542 112233444444444443 447777788888887655
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHhh------ccchhhHHH
Q 009617 460 AKAVALSLGMHWISNFVIGLYFLSVVNKF------GISTVYLGF 497 (531)
Q Consensus 460 ~~~~g~~~~~~~~g~~i~~~~~g~~~~~~------g~~~~~~~~ 497 (531)
..+.++...+ +|+++.|++.|.+.|.. ++...|++-
T Consensus 356 ~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 356 YGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred hhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 4455555543 99999999999999964 355566653
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=226.62 Aligned_cols=334 Identities=17% Similarity=0.150 Sum_probs=224.1
Q ss_pred HHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHH
Q 009617 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (531)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 188 (531)
..+..+...+....+.|.+|.+.+++|.+..+. +++.+++.+++.++++++|+++||+|||+++..+.++..++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~ 90 (394)
T PRK11652 13 LVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA 90 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 333344555667788889999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
.++++++.+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|.+++.+.+. .|||+.|++.+
T Consensus 91 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~f~~~~ 169 (394)
T PRK11652 91 LFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-FGWRACYLFLL 169 (394)
T ss_pred HHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHH
Confidence 99999999999999999999888888888999999999999999999999999999999999988754 78999999988
Q ss_pred HHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHH
Q 009617 269 IPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGA 347 (531)
Q Consensus 269 ~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (531)
++.++..+ ..++.||+++.. +++.+ .+..++++++++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 216 (394)
T PRK11652 170 LLGAGVTFSMARWMPETRPAD---ARRTR------------------------------VLASYRTLLSNRRFNCYLLML 216 (394)
T ss_pred HHHHHHHHHHHHhCCccCccc---cchhH------------------------------HHHHHHHHHcChHHHHHHHHH
Confidence 77755443 344567764310 00000 011233445555444433322
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhHHHHH----------HHHhhhcCccH--HHHHHhHHHHHHHHHHHHHh
Q 009617 348 ALFLFQQLAGINAVVYYSTSVFRS-VGIESDVAASAL----------VGAANVFGRKN--LLTFSFTGMAASMLLLSLSF 414 (531)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~----------~~~~~~~gr~~--~~~~~~~~~~~~~~~~~~~~ 414 (531)
..... .......+.+.+.++ .|.+....+... ..+.+|+.+|. ..........++.+.+....
T Consensus 217 ~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
T PRK11652 217 IGTLA----GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPG 292 (394)
T ss_pred HHHHH----HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 122222233333333 676655332221 12345554433 22222222222222222111
Q ss_pred hcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 009617 415 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK 487 (531)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 487 (531)
.. .....+.......+.+.+.+. ..|....+..|..| +.++++.++.+....+|+++++.+.+.+...
T Consensus 293 ~~---~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 293 WF---GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred Hh---ccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 00 011222233333344444433 34555557778887 5789999999999999999999998887544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=226.47 Aligned_cols=322 Identities=20% Similarity=0.231 Sum_probs=216.7
Q ss_pred HhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHH
Q 009617 118 YHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTM 197 (531)
Q Consensus 118 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (531)
+....+.|.+|.+.+++|++..+. +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 345567789999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH
Q 009617 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (531)
Q Consensus 198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~ 277 (531)
++.|++.|++.+...+...+++.|++++++|++++++.+.+..+|..++|.+++.+.+. .+||+.|++.+++.++..+.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-FSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988754 68999999988877665443
Q ss_pred -hcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhh
Q 009617 278 -MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLA 356 (531)
Q Consensus 278 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (531)
.+++||+++.. ++++.+.+ +...++++.++++..+...+...+.. .
T Consensus 162 ~~~~~~~~~~~~--~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 208 (377)
T PRK11102 162 VFFFIPETLPKE--RRQPFHLR---------------------------TTIRNFASLFRHKRVLGYMLASGFSF----A 208 (377)
T ss_pred HHHhCCccCccc--ccCCCChH---------------------------HHHHHHHHHHcChHHHHHHHHHHHHH----H
Confidence 44566654310 00000000 00112334555554433333222211 1
Q ss_pred hHHHHHHhHH-HHHHHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccC
Q 009617 357 GINAVVYYST-SVFRSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAP 421 (531)
Q Consensus 357 ~~~~~~~~~~-~~~~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (531)
+......+.+ ++.+..|++.... ....+.+.||+|+|+.+..+..+..+..+.+...... .
T Consensus 209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----~ 284 (377)
T PRK11102 209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL----D 284 (377)
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 1222222333 3444567665532 2223345899999998887776544433332221100 0
Q ss_pred cchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHH-HHHHHHHHhh
Q 009617 422 YSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHW-ISNFVIGLYF 481 (531)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~~~ 481 (531)
...+...+...++..+... ..+....+..|..| +.++++.++.+.... ++..+++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 285 LGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222222223322222 22223335667777 789999999887654 4555555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-26 Score=221.54 Aligned_cols=347 Identities=13% Similarity=0.066 Sum_probs=242.8
Q ss_pred HHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhh----hhhhHHHHHH
Q 009617 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF----QLDAVPLAAG 184 (531)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~~~ 184 (531)
+.+.++...+..+...|.+|.+.+++|.+..++ |++.+++.+...++++++|+++||+|||+.. ..+..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 345566666777888899999999999999999 9999999999999999999999999985433 222222222
Q ss_pred HHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHH
Q 009617 185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (531)
Q Consensus 185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f 264 (531)
..+..+++++.+++.|+++|.+.+...|...+++.++ +++|++++|....+.++|.+++|++++.+.+. .|||+.|
T Consensus 86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-~g~~~~f 161 (382)
T TIGR00902 86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-FDEQNIL 161 (382)
T ss_pred -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-cChhHHH
Confidence 2445678999999999999999888888888887665 46789999999999999999999999998854 7999999
Q ss_pred HHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHH
Q 009617 265 GLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVS 344 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (531)
++.++..++..+.. .++|+++. +++.++ ++.++..++++++|++.++...
T Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~l~~~~~~~~l 211 (382)
T TIGR00902 162 AILTAGLAFMLIGF-LIKPTIPP---KDAIPE--------------------------DESQGDSAFIALLKNPMNLRFL 211 (382)
T ss_pred HHHHHHHHHHHHHH-HcCCCCCC---Cccccc--------------------------cccccchhHHHHHcChHHHHHH
Confidence 88766543333322 33333210 000000 0001122356677777666655
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHHHH--------------HHhhhcCccHHHHHHhHHHHHHHHHH
Q 009617 345 VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALV--------------GAANVFGRKNLLTFSFTGMAASMLLL 410 (531)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------~~~~~~gr~~~~~~~~~~~~~~~~~~ 410 (531)
+...+.... ......+.+.+.++.|.+....+.... .+.||+|.|+.+.++.+...+..+++
T Consensus 212 ~~~~l~~~~----~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~ 287 (382)
T TIGR00902 212 AAVCLIQGA----HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII 287 (382)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 544443332 233334555566778888764433332 24789999999999988888887777
Q ss_pred HHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHH-HHHHHHHHHHHhhHHHHHhhc
Q 009617 411 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLG-MHWISNFVIGLYFLSVVNKFG 489 (531)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~i~~~~~g~~~~~~g 489 (531)
.... +.+..+....+.+..++..... ...++.+. |++.++++.++++. ...+|..++|.+.|.++|..|
T Consensus 288 ~~~~--------~~~~~~~~q~l~g~~~~~~~~~-~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 288 GAIE--------AFPLIFLLQILHCGTFAVCHLA-AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HhHh--------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5431 2333444555555555544333 44477887 88899999999874 567999999999999999998
Q ss_pred cchhhHHHHHHHHHHHHH
Q 009617 490 ISTVYLGFATVCLLAVLY 507 (531)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~ 507 (531)
+ ..|...+++.+++.++
T Consensus 358 ~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred H-HHHHHHHHHHHHHHHH
Confidence 5 6677777776665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-26 Score=221.57 Aligned_cols=345 Identities=12% Similarity=0.078 Sum_probs=215.3
Q ss_pred HHHhhHhHHhhhhhHH-HHHHhcCCCcchhHHHHHHHHHHH-HHHHHHHhHHhhhhhccchhhh-hhhhHHHHHHHHHHH
Q 009617 113 AILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTF-QLDAVPLAAGAFLCA 189 (531)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~ 189 (531)
.+...+......|.+| ++.+++|.+..++ |++.+.+.+ ++.++++++|+ +||+||||.+ ..+.++.+++..+.+
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence 3444444455556554 4788999999999 999876544 66666665666 9999999875 566677778888888
Q ss_pred HhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCcccc--chhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHh
Q 009617 190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267 (531)
Q Consensus 190 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~ 267 (531)
++++++.+++.+.+.|...+...+....++.|+.++++| +...++.+++.++|.++||++++.+.+. .|||+.|++.
T Consensus 101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-~gw~~~f~~~ 179 (393)
T PRK15011 101 WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-FSFTVMYLSA 179 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cChHHHHHHH
Confidence 999999887766555544556778888888888877655 3445788889999999999999998854 7999999999
Q ss_pred HHHHHHHHHH-hcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHH
Q 009617 268 AIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG 346 (531)
Q Consensus 268 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (531)
++++++..+. .+++||.++. +++.. + + ....++ +.+........
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~---~~~~~---~-------~--------------------~~~~~~--~~~~~~~~~~~ 224 (393)
T PRK15011 180 AVAFIVCGVMVWLFLPSMRKE---LPLAT---G-------T--------------------LEAPRR--NRRDTLLLFVI 224 (393)
T ss_pred HHHHHHHHHHHHhhcCccCCC---Ccccc---c-------c--------------------cccccc--ccccHHHHHHH
Confidence 8877665544 4446776431 00000 0 0 000000 01111111111
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHH
Q 009617 347 AALFLFQQLAGINAVVYYSTSVF-RSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASMLLLS 411 (531)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~ 411 (531)
...... .+.....+.|.+. +..+++.... ....+.++||++||+.+..+.+...+....+.
T Consensus 225 ~~~~~~----~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~ 300 (393)
T PRK15011 225 CTLMWG----TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML 300 (393)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 111111 1222333444443 4556665422 12234458999999877766554444332222
Q ss_pred HHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Q 009617 412 LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIS 491 (531)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~ 491 (531)
.. + +.+..+....+.....+.. .+....+..|..|+ ++++++++++...++|..++|.+.|.+.+..|++
T Consensus 301 ~~-------~-~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~ 370 (393)
T PRK15011 301 MA-------H-SPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYH 370 (393)
T ss_pred HH-------h-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 11 0 1222222222222222211 11223466788885 5999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhhe
Q 009617 492 TVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~ 510 (531)
..+.+.+++++++.++.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 371 AVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888777777776655543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-26 Score=220.52 Aligned_cols=318 Identities=19% Similarity=0.195 Sum_probs=220.8
Q ss_pred HHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHH
Q 009617 120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199 (531)
Q Consensus 120 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (531)
...+++.+|.+.+++|.+..+. +++.+++.+++.+++++.|+++||+|||+++.++.++..++.+++ .+++++.+++
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 3567889999999999999999 999999999999999999999999999999999999988888877 7889999999
Q ss_pred HHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC-chhHHHHHHhHHHHHHHHHHh
Q 009617 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-LWWRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~gwr~~f~~~~~~~~~~~~~~ 278 (531)
.|++.|++.+...+....++.|+++ ++|+++++++..+..+|..+++.+++.+.+.. .+||+.|.+.+++.++..+
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-- 169 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-- 169 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence 9999999999888888889999996 57999999999999999999999888776442 2499999877765443322
Q ss_pred cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhH
Q 009617 279 GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGI 358 (531)
Q Consensus 279 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (531)
.++|+.++ ++++ ++...+...+++++++..+...+...+... .+
T Consensus 170 ~~~~~~~~----~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 213 (355)
T TIGR00896 170 AWIPQVRR----RVAA----------------------------NQTTTRLTPVRIWRSPLAWQVTVFFGLQSG----LY 213 (355)
T ss_pred HHhhhhcc----ccCC----------------------------CCCCCCCCCchhhcCHhHHHHHHHHHHHHH----HH
Confidence 22333221 0000 000011234456666554443332222211 23
Q ss_pred HHHHHhHHHHHHHcCCChhhH--------------HHHHHHHhhhc-CccHHHHHHhHHHHHHHHHHHHHhhcccccCcc
Q 009617 359 NAVVYYSTSVFRSVGIESDVA--------------ASALVGAANVF-GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 423 (531)
Q Consensus 359 ~~~~~~~~~~~~~~g~~~~~~--------------~~~~~~~~~~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (531)
.....+.|.++++.|.+.... ....+.+.||+ +||+.+..+.++.+++.+.+.+.. .
T Consensus 214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 285 (355)
T TIGR00896 214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--------M 285 (355)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--------h
Confidence 444556677777777766432 22233458999 456666666666666665554321 1
Q ss_pred hhHHHHHHHHHHHHHhcCcccccccccc-cccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 009617 424 GTLAVLGTVLYVLSFSLGAGPVPALLLP-EIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG 489 (531)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 489 (531)
.... ....+++.+.+ ...+....... +..+++.++...++.+.+++++.+++|.+.|.+.|..|
T Consensus 286 ~~~~-~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 286 HGLW-AWALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hHHH-HHHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 12233333332 22333333443 44456778999999999999999999999999999887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=221.56 Aligned_cols=361 Identities=16% Similarity=0.112 Sum_probs=232.1
Q ss_pred HHHHHHhhHhHHhh-hhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccc-hhhhhhhhHHHHHHHHH
Q 009617 110 CLGAILFGYHLGVV-NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFL 187 (531)
Q Consensus 110 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~ 187 (531)
++..+..+...+.. ++..+++.+++|.+..++ |++.+++.++..++++++|.++||+|| |+++.++.++.+++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 33344444445554 556778888999999999 999999999999999999999999965 77888889999888888
Q ss_pred HHHhchHHHHHHHHHHHHhhhhhccchhhhhhh--------hcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch
Q 009617 188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYIS--------EISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (531)
Q Consensus 188 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g 259 (531)
..+.++++.+++.|++.|++.+...+...++.. |......|.+.+| .+|.++|+++++.+. ....
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~-~~~~ 158 (418)
T TIGR00889 86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD-IELS 158 (418)
T ss_pred HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc-ccch
Confidence 899999999999999999987766666555432 2223234455555 367788888887763 2234
Q ss_pred hHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccch
Q 009617 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339 (531)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (531)
|+. |++.+++.++..+..+++||+|+.. ++++.+..+ ..+.+.++++|++.
T Consensus 159 ~~~-f~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~--------------------------~~~~~~~~~~k~~~ 209 (418)
T TIGR00889 159 NIQ-LYITAGSSALLGVFALTLPDIPVAK--STAKMSIKV--------------------------MLGLDAFILFKNKR 209 (418)
T ss_pred hHH-HHHHHHHHHHHHHHHhcCCCCCCCc--cccccCHHH--------------------------HhhhhHHHHhcCCC
Confidence 654 5555655555555566778875310 000000000 00112334555655
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCh--------h--------------hHHHHHHHHhhhcCccHHHH
Q 009617 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES--------D--------------VAASALVGAANVFGRKNLLT 397 (531)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~--------------~~~~~~~~~~~~~gr~~~~~ 397 (531)
++...+..++.... ......+.+.+.++.|.+. . ......+.+.||+|+|+.+.
T Consensus 210 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~ 285 (418)
T TIGR00889 210 MAIFFFFSMLLGAP----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVML 285 (418)
T ss_pred eeeHHHHHHHHHhH----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 44444433332221 1122233344444444321 1 12233344699999999999
Q ss_pred HHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHH-HHHHHHHHH
Q 009617 398 FSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL-GMHWISNFV 476 (531)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i 476 (531)
.+.++..++..++..... .....+..++..++.+.+.+. ..+....++.|.+|++.|+++.|+.+ ....+|.++
T Consensus 286 ~~~~~~~v~~~l~~~~~~----~~~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 286 LSLVAWALRFGFFAYGDP----EYFGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHHHHHHHcCc----chhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 998888777665544210 000112222333334444332 33444557899999999999999997 567899999
Q ss_pred HHHhhHHHHHhh------ccchhhHHHHHHHHHHHHHhheecccCCC
Q 009617 477 IGLYFLSVVNKF------GISTVYLGFATVCLLAVLYIAVNVVETKG 517 (531)
Q Consensus 477 ~~~~~g~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (531)
+|.+.|.+.+.. ||+..|.+.+++.+++.++.+++.+|+++
T Consensus 361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999984 47788888888888877777777776644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=218.01 Aligned_cols=358 Identities=19% Similarity=0.089 Sum_probs=239.8
Q ss_pred HHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-----cchh-hhhhhhHHHHH
Q 009617 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTR-TFQLDAVPLAA 183 (531)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~ 183 (531)
...++..+...+.....+|.+-++.|.+.+++ |++..+... .+.++++|+++||+ |||| +++++.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 34456667777788889999999999999999 999777765 58999999999999 8875 78888888888
Q ss_pred HHHHHHHh---chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchh
Q 009617 184 GAFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 184 ~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
+..+.++. .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+...||
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 88887877 357778888888888888888999999999999999999999999999999999999888887543599
Q ss_pred HHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchh
Q 009617 261 RTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW 340 (531)
Q Consensus 261 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (531)
|..|++.+++.++..+..++.||+++. ++++++..+ +.+.+++++++++.+
T Consensus 161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~~--------------------------~~~~~~~~l~~~~~~ 211 (402)
T PRK11902 161 GNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLGE--------------------------AVVGPLRDFFSRRGA 211 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchhHH--------------------------HHHHHHHHHHhCcCH
Confidence 999999988776655555566766431 111000000 011235566777766
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHH---------------HHHHhhhcCccHHHHHHhHHHHH
Q 009617 341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASA---------------LVGAANVFGRKNLLTFSFTGMAA 405 (531)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------~~~~~~~~gr~~~~~~~~~~~~~ 405 (531)
+...+...+...... ....+..+++.++.|++....+.. .+.+.||+++|+.+..+.++..+
T Consensus 212 ~~~l~~~~l~~~~~~---~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l 288 (402)
T PRK11902 212 WALLLLIVLYKLGDA---FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAV 288 (402)
T ss_pred HHHHHHHHHHHhHHH---HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 665554433332211 111223344555567766532222 12247999998887766665555
Q ss_pred HHHHHHHHhhcccccCcchhHHHHHHHH---HHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 009617 406 SMLLLSLSFTWKVLAPYSGTLAVLGTVL---YVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFL 482 (531)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 482 (531)
..+.+...... ..+.+..+....+ ...............++.+.+|.+. .++.+.+..++..+++.+.|
T Consensus 289 ~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G 360 (402)
T PRK11902 289 SNLGYWVLAVT----PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSG 360 (402)
T ss_pred HHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 54433221111 1122222222211 1111112223344456777777554 45566666777777778999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHhhee
Q 009617 483 SVVNKFGISTVYLGFATVCLLAVLYIAVN 511 (531)
Q Consensus 483 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 511 (531)
.+.|..|++..|.+.+.+++++.++.+..
T Consensus 361 ~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 361 YLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887776665443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=223.22 Aligned_cols=359 Identities=14% Similarity=0.033 Sum_probs=211.8
Q ss_pred HhHHhhhhhH-HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH---Hhch
Q 009617 118 YHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---TAQS 193 (531)
Q Consensus 118 ~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~ 193 (531)
+..+...+.+ .++.+++|++..+. |++.+++.+++.++++++|+++||+|||++++++..+.+++..... .++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (420)
T PRK09528 24 FIWSSWFSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPL 101 (420)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444 45677799999999 9999999999999999999999999999999887766655443221 1111
Q ss_pred HH-HHHHHHHHHHhhhhhccchhhhhhhhcCC--ccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHH
Q 009617 194 VQ-TMIIGRVLAGIGIGISSAIVPLYISEISP--TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (531)
Q Consensus 194 ~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~ 270 (531)
+. ......++.++..+.........+.++.+ .+++++.++......++|..++|++++.+.+ .+|++.|++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~f~~~~~~ 179 (420)
T PRK09528 102 LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN--INPQINFWLGSGS 179 (420)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh--cCchHhHHHHHHH
Confidence 11 01112222233333222222222333322 2356888899999999999999999998864 5899999998888
Q ss_pred HHHHHHHhccc-ccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHH
Q 009617 271 SILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAAL 349 (531)
Q Consensus 271 ~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (531)
.++..+..+++ +|+++....+++ ++. +++.......++.+|++..+...+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------------~~~~~~~~~~~~~l~~~~~~~l~l~~~~ 234 (420)
T PRK09528 180 ALILLVLLFFAKPDAPSTAKVANA-LGA------------------------NASAVSLKDALALLKLPKFWFLVLYVIG 234 (420)
T ss_pred HHHHHHHHhcccccccchhhhccc-hhc------------------------ccccccHHHHHHHccCCCeEeehHHHHH
Confidence 76666555554 333221000000 000 0000011123345555544433332222
Q ss_pred HHHHHhhhHHHHHHhHHHHHHHcCCChh--------------hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhh
Q 009617 350 FLFQQLAGINAVVYYSTSVFRSVGIESD--------------VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFT 415 (531)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~ 415 (531)
..............|......+.+.+.. ......+.+.||+|+|+.+..+.++..++.+++.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~- 313 (420)
T PRK09528 235 VACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-
Confidence 2111111111122222222222233322 2223344569999999998888887777766665421
Q ss_pred cccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHH-HHHHHHHHHHHHHHhhHHHHHhhccchhh
Q 009617 416 WKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL-SLGMHWISNFVIGLYFLSVVNKFGISTVY 494 (531)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 494 (531)
+.+..+....+.+.+... ..+....++.|.+|++.+++..+. .++...+|.+++|.+.|.+.|..||+..|
T Consensus 314 -------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f 385 (420)
T PRK09528 314 -------GPLEVSILKLLHAFEVPF-LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTY 385 (420)
T ss_pred -------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence 222222223333333222 122333477888899999888766 67778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeccc
Q 009617 495 LGFATVCLLAVLYIAVNVVE 514 (531)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~ 514 (531)
...+++.++..++.+...++
T Consensus 386 ~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 386 LILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99888877776666554444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=219.76 Aligned_cols=333 Identities=21% Similarity=0.197 Sum_probs=214.7
Q ss_pred HHHHHHHHhhHhHHhhhhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHH
Q 009617 108 VACLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (531)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 186 (531)
..+++.+........+.+..|. +++++|++..+. +++.+++.+++.++++++|+++||+|||+++.++.++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3455555666667788889995 999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhc-hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC---------C
Q 009617 187 LCATAQ-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------N 256 (531)
Q Consensus 187 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------~ 256 (531)
++++++ +++.+++.|+++|++.+ ..+....+++|++|+++|++++++.....++|..+++.+++.+.. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999 99999999999999965 456678899999999999999999997777777777766655432 1
Q ss_pred CchhHHHH-HHhHHHHHH-HHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhh
Q 009617 257 PLWWRTMF-GLAAIPSIL-LALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDL 334 (531)
Q Consensus 257 ~~gwr~~f-~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (531)
..+||+.| +..+++..+ ..+...+.+|+|+.. ++++ +...+ .. .. ..+++.....++.
T Consensus 162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~---~~-~~-----------~~~~~~~~~~~~~ 221 (366)
T TIGR00886 162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK----PATG-KLSFK---GA-RW-----------SVGTGALGDQLKV 221 (366)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcccCCccc----ccch-hcccc---cc-cc-----------cccchhHHHHHHH
Confidence 24899999 444554433 333344456655311 0000 00000 00 00 0000001134455
Q ss_pred hccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhHHHHH--------------HHHhhhcCccHHHHHH
Q 009617 335 FSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVAASAL--------------VGAANVFGRKNLLTFS 399 (531)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~--------------~~~~~~~gr~~~~~~~ 399 (531)
++++..+...+........ ......+.+.++ +..|++....+... +.+.||+|+|+....+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~ 297 (366)
T TIGR00886 222 FRDRHTWILALLYSVTFGS----FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMS 297 (366)
T ss_pred HhccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHH
Confidence 6665554444433332221 223334444444 44576655332211 2358999998887777
Q ss_pred hHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHH
Q 009617 400 FTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWIS 473 (531)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 473 (531)
......+..++.+.... ..+....+....+...+.+.+. +..+++..+..| +.+|+++|+.+.++++|
T Consensus 298 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 298 FLGVAMGAFLVVLGLVS----PLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 66666555555432110 0012222222333333333333 344457778887 68999999999988765
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=211.48 Aligned_cols=341 Identities=13% Similarity=0.057 Sum_probs=227.4
Q ss_pred HHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccch----hhhhhhhHHHHHHHHHH
Q 009617 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT----RTFQLDAVPLAAGAFLC 188 (531)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~ 188 (531)
++......+.+.|.+|.+.+|+|.+..++ |++.+++.++..++++++|+++||+||| +.+.++..+. .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence 34444556788889999999999999999 9999999999999999999999999994 3332222221 22334
Q ss_pred HHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
..+++++.+++.|++.|++.+...+...+++.++ +++|+++.+.......+|.++||++++++.+. .|||..|++.+
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-~g~~~~f~~~~ 165 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-FGEQAILWILT 165 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-cChhHHHHHHH
Confidence 4468899999999999999988889888887777 35588899999999999999999999999854 79999998887
Q ss_pred HHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHH
Q 009617 269 IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAA 348 (531)
Q Consensus 269 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (531)
+..++..+..++.||+++ ++++++ +.++...++++++|++..+......+
T Consensus 166 ~~~~~~~~~~~~~~~~~~----~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~ 215 (382)
T PRK11128 166 AGVASMLLGQLLRPTIMP----QGESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVS 215 (382)
T ss_pred HHHHHHHHHHHccCCCCC----cccccc--------------------------ccccccchHHHHHcChhHHHHHHHHH
Confidence 655544443334444321 000000 00011335677888876665554433
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHH--------------HHHHhhhcCccHHHHHHhHHHHHHHHHHHHHh
Q 009617 349 LFLFQQLAGINAVVYYSTSVFRSVGIESDVAASA--------------LVGAANVFGRKNLLTFSFTGMAASMLLLSLSF 414 (531)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 414 (531)
+.... +.....+.+.+.++.|.+....+.. .+.+.||+++|+.+..+.+..+++.+++...
T Consensus 216 l~~~~----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~- 290 (382)
T PRK11128 216 LLQGS----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST- 290 (382)
T ss_pred HHHHH----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-
Confidence 33322 2222233344446677765432222 2235799999999888888777776655432
Q ss_pred hcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHH-HHHHHHHHHHhhHHHHHhhccchh
Q 009617 415 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM-HWISNFVIGLYFLSVVNKFGISTV 493 (531)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~~~g~~~~~~g~~~~ 493 (531)
.+.+..++..++.+.+++.. .+....+..+. +++++++..++.+.. ..+|..++|.+.|.+.|..|. ..
T Consensus 291 -------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~ 360 (382)
T PRK11128 291 -------TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GV 360 (382)
T ss_pred -------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HH
Confidence 12333444444444444433 33344466666 556678888988744 466778999999999999886 45
Q ss_pred hHHHHHHHHHHH
Q 009617 494 YLGFATVCLLAV 505 (531)
Q Consensus 494 ~~~~~~~~~~~~ 505 (531)
++..+++.+++.
T Consensus 361 ~~~~~~~~~~~~ 372 (382)
T PRK11128 361 FWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-27 Score=212.83 Aligned_cols=331 Identities=13% Similarity=0.070 Sum_probs=229.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchh
Q 009617 136 IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215 (531)
Q Consensus 136 ~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 215 (531)
.++.++ |++.+.+.+.+.+.+++.|.+.||+|+|..+++|++++...++++++.++++.++++|.+||+|.+...+.+
T Consensus 103 ~e~~~i--G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 103 RENTQI--GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccch--hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 344556 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCcc-ccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCCh
Q 009617 216 PLYISEISPTE-IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKK 294 (531)
Q Consensus 216 ~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (531)
.++++|.||++ ||++++|+...+.++|..+||.+||++.+. .|.+.+|++.++++++-..+.+++-|..+. ++
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~---~~-- 254 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAPFLVLAIVLLLDGALQLLVIEPTEM---DP-- 254 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCcHHHHHHHHHHHHHHHHheeCcccc---Cc--
Confidence 99999999975 579999999999999999999999999965 899999999999998877766665333210 00
Q ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcC-
Q 009617 295 SEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVG- 373 (531)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 373 (531)
+...+...+++++++++........... +......-..+.....+...
T Consensus 255 ----------------------------~~~~~~~~~~~Ll~dP~I~~~agai~~~---n~~lafLePtlslwm~e~m~~ 303 (464)
T KOG3764|consen 255 ----------------------------DSTEQGTPMWSLLMDPYILLIAGAITFS---NSSLAFLEPTLSLWMLETMFT 303 (464)
T ss_pred ----------------------------cccccCccHHHHHhCchHhhhhcchhhc---cchHHHhCcccHHHHHHhccC
Confidence 0112334566667666554433222111 11111111112222233322
Q ss_pred -------------CChhhHHHHHHHHhhhcCccHHHH--HHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHH
Q 009617 374 -------------IESDVAASALVGAANVFGRKNLLT--FSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSF 438 (531)
Q Consensus 374 -------------~~~~~~~~~~~~~~~~~gr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (531)
++......+.+.+.||++..+.+. .+.+...+......+...+. ..+.....+.+.+...
T Consensus 304 p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~-----~L~vp~~~l~~~i~~~ 378 (464)
T KOG3764|consen 304 PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA-----QLWVPNFGLGFGIGLA 378 (464)
T ss_pred CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH-----HHhhhhHHHHHHHHHH
Confidence 223355666677899998433332 33333332222222221110 1111222222222222
Q ss_pred hcCcccccccccccccChh---hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhhee
Q 009617 439 SLGAGPVPALLLPEIFASR---IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVN 511 (531)
Q Consensus 439 ~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 511 (531)
.....|... +..|....+ ..|..+++......+|.++||.++|.+.+..|++|...+.+...++..-++.++
T Consensus 379 dasl~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 379 DASLIPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHhhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445554 455554444 789999999999999999999999999999999999998888888777655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=216.69 Aligned_cols=379 Identities=15% Similarity=0.093 Sum_probs=227.5
Q ss_pred hhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh-ccchhhhhhhhHHHHHHHHHHHHhchHHH-HHHHH
Q 009617 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQT-MIIGR 201 (531)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r 201 (531)
..+..++.+++|.+..+. +++.+.+.....+..+++|+++|| +|||++++++.+++++++++++++.+... ++++|
T Consensus 35 ~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~ 112 (489)
T PRK10207 35 GILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIAL 112 (489)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 346678889999999998 999999998888889999999999 99999999999999999999999877554 55899
Q ss_pred HHHHhhhhhccchhhhhhhhcCCcc--ccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc
Q 009617 202 VLAGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 202 ~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
+++|+|.|...+...++++|++|++ +|++++++++.+.++|.++||.+++++.+. .|||+.|++.++..++..+.+.
T Consensus 113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~-~gw~~~F~i~~i~~~~~~~~~~ 191 (489)
T PRK10207 113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK-FGYSVTYNLCGAGLIIALLVYF 191 (489)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 457899999999999999999999999865 7999999987654333333333
Q ss_pred ccccchhHHH--HhCChHHHHHHH-------------HHHhCccchHHHH-H--------HHHHhccCCCCCccchhhhh
Q 009617 280 LSPESPRWLF--QQGKKSEAEKSI-------------QTLYGKERVSEVM-L--------DLTNAGQGSAEPEAGWFDLF 335 (531)
Q Consensus 280 ~~~e~~~~~~--~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~ 335 (531)
+.++..+... .++++.+..... ............. . ....++ .+. .+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~-~~~------~~~~ 264 (489)
T PRK10207 192 ACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREA-FKL------DKTG 264 (489)
T ss_pred HcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hcC------CHHH
Confidence 3332111000 000001100000 0000000000000 0 000000 000 1344
Q ss_pred ccchhHHHHHH--HHHHHHHHhhhHHHHHHhHHHHHH--HcCCC--hh-----------hHHHHHHHHhhhcCccH----
Q 009617 336 SSRYWKVVSVG--AALFLFQQLAGINAVVYYSTSVFR--SVGIE--SD-----------VAASALVGAANVFGRKN---- 394 (531)
Q Consensus 336 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~--~~-----------~~~~~~~~~~~~~gr~~---- 394 (531)
|++.+....+. ..++.............+...... ..|+. +. ....+.+.+.||+++|+
T Consensus 265 r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~ 344 (489)
T PRK10207 265 RNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLS 344 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 44433322211 111111111111222222221111 11222 10 22223345678888876
Q ss_pred ---HHHHHhHHHHHHHHHHHHHhh-ccccc-CcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHH
Q 009617 395 ---LLTFSFTGMAASMLLLSLSFT-WKVLA-PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM 469 (531)
Q Consensus 395 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 469 (531)
.+.++.++.+++++.+..... ..... ..+.++.+...++.+.+.. ...+....++.+..|++.+|.++|+.+..
T Consensus 345 ~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~-~~~~~g~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 345 MPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGEL-FISALGLAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 366677777767654432111 11111 1123333334444444443 34556566888889999999999999999
Q ss_pred HHHHHHHHHHhhHHHHH----------hhccchhhHHHHHHHHHHHHHhheecc
Q 009617 470 HWISNFVIGLYFLSVVN----------KFGISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 470 ~~~g~~i~~~~~g~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
.++|+.++..+...... ...+.+.|...++.++++.++.+...|
T Consensus 424 ~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 424 QAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred HHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887765421 112456677777666666655544333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-26 Score=223.82 Aligned_cols=393 Identities=16% Similarity=0.136 Sum_probs=264.8
Q ss_pred chhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHH
Q 009617 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180 (531)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 180 (531)
+.|.+++..++......-....++...+.++++++.+..++ +|+.++....+.+..++.+.+.||+|.|.+.+.|.++
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v 120 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV 120 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence 34666666666655544445566678999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHH-HHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch
Q 009617 181 LAAGAFLCATAQSVQTMIIGR-VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (531)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~r-~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g 259 (531)
.+++.++.+++++++++++.. ++.|+|.|..+.....++..||+++ |+.+.|+...+.++|.++-|.+...+.+. .|
T Consensus 121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l~~~l~~~-~G 198 (509)
T KOG2504|consen 121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPLLKYLLSK-YG 198 (509)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHHHHHHHHH-hC
Confidence 999999999999999998877 8999999999999999999888765 99999999999999988777777777744 89
Q ss_pred hHHHHHHhHHHHHHHHHHhccc-ccchhHHHHhCChHH-HHHHHH--------HHh--CccchH---HHHHHHHHhccCC
Q 009617 260 WRTMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSE-AEKSIQ--------TLY--GKERVS---EVMLDLTNAGQGS 324 (531)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~-~~~~~~--------~~~--~~~~~~---~~~~~~~~~~~~~ 324 (531)
||+.+++.+.+.+-.++....+ |..+.....+.++.+ ..+..+ +.. +..... ......++...+.
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKW 278 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccc
Confidence 9999999998886655544443 322221000000000 000000 000 000000 0000111111111
Q ss_pred C--CCccch----hhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHHH--------------H
Q 009617 325 A--EPEAGW----FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASAL--------------V 384 (531)
Q Consensus 325 ~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~ 384 (531)
+ ..+... .++++++.+..+.+...+..+ ++.....+.+.+....|++......+. +
T Consensus 279 ~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~----g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G 354 (509)
T KOG2504|consen 279 RNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL----GFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILG 354 (509)
T ss_pred cccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhh
Confidence 1 111122 467777665555554444333 456666777777777777766444333 3
Q ss_pred HHhhhcCc--cHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHH
Q 009617 385 GAANVFGR--KNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 462 (531)
Q Consensus 385 ~~~~~~gr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 462 (531)
.++|+... +....++.++.+++.+.+.+.. +....+....+++...+ .+.......+.|+++.++-..+
T Consensus 355 ~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~--------~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a 425 (509)
T KOG2504|consen 355 LLADKPGIRALVLFLLTLLIAGLARLFLPFAT--------TYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNA 425 (509)
T ss_pred hhcCccccchHHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchH
Confidence 45676663 3344455555555554443321 11222233333333322 3344444578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhHHHHHHHHHHHHHhhe
Q 009617 463 VALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 463 ~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 510 (531)
.|+...+..++..++|++.|.+.|..| |...|...+.+.+++..+.+.
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 999999999999999999999999988 888888888887777765443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=213.00 Aligned_cols=360 Identities=16% Similarity=0.091 Sum_probs=226.1
Q ss_pred HHHHHHhhHhHHhhhhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHH
Q 009617 110 CLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188 (531)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 188 (531)
....+........+.|.+| ++.+++|.+..+. |++.+++.+++.++++++|+++||+|||+.++.+++..+++....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~ 85 (396)
T TIGR00882 8 GLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF 85 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666665 4567799999999 999999999999999999999999999999988777766544332
Q ss_pred H---Hh-----chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchh
Q 009617 189 A---TA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 189 ~---~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
. +. +.+..+++.|++.|++.+...+....++.|..+ +++..++......++|.++||++++.+.+ .+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--~~~ 161 (396)
T TIGR00882 86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS--IDP 161 (396)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc--cCc
Confidence 1 22 223445677888899888888888777777532 34567788888889999999999998864 589
Q ss_pred HHHHHHhHHHHHHHHHHhccc-ccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccch
Q 009617 261 RTMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339 (531)
Q Consensus 261 r~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (531)
|+.|++.+++.++..+..++. +|+|+. +++ ++.. +.+.++++..+.+++++++.
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~---------------------~~~~~~~~~~~~~~~l~~~~ 216 (396)
T TIGR00882 162 QIVFWLGSGFALILMLLLMFAKPKAPSS---ATV-ANAL---------------------GANASAFSLKLALELFRQRK 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCchh---hhh-hccc---------------------ccccCCCCHHHHHHHHcCCc
Confidence 999999988887665544443 443321 000 0000 00011112234567777776
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh--------------hHHHHHHHHhhhcCccHHHHHHhHHHHH
Q 009617 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--------------VAASALVGAANVFGRKNLLTFSFTGMAA 405 (531)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~~~~~~~gr~~~~~~~~~~~~~ 405 (531)
++...+..................|...+....+.+.. ......+.+.||+|+|+.+.++.++.++
T Consensus 217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l 296 (396)
T TIGR00882 217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSV 296 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 54443332222111110011112222222111122221 1122333468999999998888877777
Q ss_pred HHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHH-HHHHHHHHHHHHHHhhHHH
Q 009617 406 SMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL-SLGMHWISNFVIGLYFLSV 484 (531)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~g~~ 484 (531)
...+.... .+.+..++..++.+.+.... ......+..+..|++.++++.+. .+....+|+++++.+.|.+
T Consensus 297 ~~~~~~~~--------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l 367 (396)
T TIGR00882 297 RIIGSSFA--------TTALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNM 367 (396)
T ss_pred HHHHHHhc--------CChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHH
Confidence 66554431 02222333333333332211 11222355677788888887766 6788999999999999999
Q ss_pred HHhhccchhhHHHHHHHHHHHHHhh
Q 009617 485 VNKFGISTVYLGFATVCLLAVLYIA 509 (531)
Q Consensus 485 ~~~~g~~~~~~~~~~~~~~~~~~~~ 509 (531)
.|..|+...|.+.+++.++..++..
T Consensus 368 ~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 368 YDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888877766543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=212.59 Aligned_cols=181 Identities=17% Similarity=0.131 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENT-VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 183 (531)
+.+++|+..|+..+ +...+.+.|++.+|+|+++.+ . |.+.++++.+|++++++.|+++||+|.|+++.++++.+++
T Consensus 28 ~~~~lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv~--G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl 104 (511)
T TIGR00806 28 LVLYLCFYGFMAQF-RPGESFITPYLLTVLNFTEETVT--NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC 104 (511)
T ss_pred HHHHHHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 44445666666555 777788999999999999999 8 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHH
Q 009617 184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (531)
Q Consensus 184 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~ 263 (531)
.+++.++++++..+.+.|++.|+++|+.+ +...++..|+|+++|+++.++..++..+|.++++++++.+. . .|||+-
T Consensus 105 ~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-~gWr~y 181 (511)
T TIGR00806 105 VWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-LGWISY 181 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCchhH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999854 3 689876
Q ss_pred HHHhH---HHHHHHHHHhcccccchhHHHHh
Q 009617 264 FGLAA---IPSILLALGMGLSPESPRWLFQQ 291 (531)
Q Consensus 264 f~~~~---~~~~~~~~~~~~~~e~~~~~~~~ 291 (531)
+.+.- ...++.++..+++|..++.+.-+
T Consensus 182 ~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~ 212 (511)
T TIGR00806 182 STLNIISLVFMTFSVFLALFLKRPKRSLFFN 212 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence 55442 22244556667788666544333
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=212.62 Aligned_cols=391 Identities=16% Similarity=0.112 Sum_probs=238.4
Q ss_pred HHHHHhhHhHHhhhhhHH-HHHHh--cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh-ccchhhhhhhhHHHHHHHH
Q 009617 111 LGAILFGYHLGVVNGALE-YLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAF 186 (531)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~-~i~~~--~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~ 186 (531)
+..+...+......+.+| ++.++ +|.+..+. +++.+.+.+++.++++++|+++|| +|||+++.++.++++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~ 94 (475)
T TIGR00924 17 FVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF 94 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 344444454444445555 45555 89999999 999999999999999999999999 8999999999999999999
Q ss_pred HHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccc---cchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHH
Q 009617 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (531)
Q Consensus 187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~ 263 (531)
+.+++++++.++++|++.|++.|...+...++++|++|+++ |++++++++.+.++|.++||++++.+.+. .||++.
T Consensus 95 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~-~g~~~~ 173 (475)
T TIGR00924 95 MLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN-YGYHVG 173 (475)
T ss_pred HHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh-cChHHH
Confidence 99999999999999999999999999999999999998764 88899999999999999999999998754 689999
Q ss_pred HHHhHHHHHHHHHHhcccc----cchhHHHHhCChHHHHHHHHH---------------HhCccchHHHH---------H
Q 009617 264 FGLAAIPSILLALGMGLSP----ESPRWLFQQGKKSEAEKSIQT---------------LYGKERVSEVM---------L 315 (531)
Q Consensus 264 f~~~~~~~~~~~~~~~~~~----e~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~---------~ 315 (531)
|++.++..++..+.+++.+ +.|+.. .+.+.++....... ........... .
T Consensus 174 f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (475)
T TIGR00924 174 FNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVII 252 (475)
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9998865554444333322 211100 00000000000000 00000000000 0
Q ss_pred HHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-c-----CCC--hh-------hHH
Q 009617 316 DLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-V-----GIE--SD-------VAA 380 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~--~~-------~~~ 380 (531)
...+... +++.+..+-.|......+.+...++... +.-.....+.+.++ . ++. .. ...
T Consensus 253 ~~~~~~~---~~~~~~~~~~~~~~~l~l~~~~~~~~~~----~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~i 325 (475)
T TIGR00924 253 FFFRLAF---KPRLDAVARNKMYAYIVLFLEAVVFWVL----YAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWV 325 (475)
T ss_pred HHHHHHH---hccCCHHHHhHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHH
Confidence 0000000 0000000101111111112222222221 22222212222211 1 111 11 111
Q ss_pred HHHHHH----hhhcCc-----cHHH--HHHhHHHHHHHHHHHHHhhccccc-CcchhHHHHHHHHHHHHHhcCccccccc
Q 009617 381 SALVGA----ANVFGR-----KNLL--TFSFTGMAASMLLLSLSFTWKVLA-PYSGTLAVLGTVLYVLSFSLGAGPVPAL 448 (531)
Q Consensus 381 ~~~~~~----~~~~gr-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (531)
.+...+ ..+.+| +... .++.++.+++++.+.+........ ..+.++.+...++.+.+. ....|....
T Consensus 326 il~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge-~~~~p~~~~ 404 (475)
T TIGR00924 326 VVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGE-LMISPLGLS 404 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH-HHHhHHHHH
Confidence 111111 123333 2333 567777777777765432211111 223444444444444444 456777777
Q ss_pred ccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecc
Q 009617 449 LLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 449 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
++.+..|++.||+++|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus 405 ~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 405 WWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888777777777888887777777666655444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=200.00 Aligned_cols=338 Identities=16% Similarity=0.120 Sum_probs=199.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhh
Q 009617 141 VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYIS 220 (531)
Q Consensus 141 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 220 (531)
...|.+.+.|.+++.+.++.||.++||+|||+++.+|++..++...+.++++|+..++++|++.|+..| ...+..++++
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAiis 146 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAIIS 146 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999999999777777999999987 6788999999
Q ss_pred hcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC--Cch---hHHHHHHhHHHHHH-HHHHhcccccchhHHHHhCCh
Q 009617 221 EISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--PLW---WRTMFGLAAIPSIL-LALGMGLSPESPRWLFQQGKK 294 (531)
Q Consensus 221 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--~~g---wr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~ 294 (531)
|.+++++|+++++......++|.++||.+|+++.+. ..| .-.+-++..++... .....+++||+-+...+++..
T Consensus 147 dV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~ 226 (451)
T KOG2615|consen 147 DVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEH 226 (451)
T ss_pred hhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccc
Confidence 999999999999999999999999999999999861 111 12222333333333 445567789984322111000
Q ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHH---HHHHHHHHHhhhHHHHHHhHHHH-HH
Q 009617 295 SEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV---GAALFLFQQLAGINAVVYYSTSV-FR 370 (531)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~ 370 (531)
.+..+.. +.+.+..+.. ...-....+++.....+. .+.+..+.+...+....++...+ .+
T Consensus 227 ~~~~~~~-------~~~~~~~~~~---------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~ 290 (451)
T KOG2615|consen 227 STLQEAA-------DDRLALLKFA---------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHG 290 (451)
T ss_pred cchhhhh-------hhhhhhcchh---------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC
Confidence 0000000 0000000000 000011112211111111 11111111111133333333333 35
Q ss_pred HcCCChhhH-------HHHHHH----H---hhhcC--ccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHH
Q 009617 371 SVGIESDVA-------ASALVG----A---ANVFG--RKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLY 434 (531)
Q Consensus 371 ~~g~~~~~~-------~~~~~~----~---~~~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (531)
.+|+++... ++.... + .++.+ -+-.+..+..++.-.++++... + ..........+.
T Consensus 291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------~-~~~~l~~~s~l~ 362 (451)
T KOG2615|consen 291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------R-TPVVLYLGSTLK 362 (451)
T ss_pred ccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------c-cchhhhHHHHHH
Confidence 566666522 111111 1 22222 2223333433333333333322 1 122222333333
Q ss_pred HHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh-ccchhhHHHHHHHHHH
Q 009617 435 VLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF-GISTVYLGFATVCLLA 504 (531)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~-g~~~~~~~~~~~~~~~ 504 (531)
.+... ...+....++....|+++||+++|+..+.+.++.++||.+.|.+..+. +-+..+...+.+.++.
T Consensus 363 sf~~A-~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 363 SFSTA-SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred HHHHH-HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence 33333 233445558889999999999999999999999999999998876532 2233344334433333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=240.25 Aligned_cols=344 Identities=17% Similarity=0.041 Sum_probs=223.2
Q ss_pred hhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHH---HHhchHHHHHH
Q 009617 123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATAQSVQTMII 199 (531)
Q Consensus 123 ~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~ 199 (531)
...+.+.+..+++.+......+++.+++.+++.++++++|+++||+|||++++++.++.+++.++. ..+++++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (1146)
T PRK08633 29 KILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFA 108 (1146)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 334666777788877666555999999999999999999999999999999999887766655543 34578999999
Q ss_pred HHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC--------CchhHHHHHHhHHHH
Q 009617 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--------PLWWRTMFGLAAIPS 271 (531)
Q Consensus 200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~~gwr~~f~~~~~~~ 271 (531)
+|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+++++++... ..+|++.+.+..+..
T Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1146)
T PRK08633 109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAV 188 (1146)
T ss_pred HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988643 234555554444433
Q ss_pred -HHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHH
Q 009617 272 -ILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALF 350 (531)
Q Consensus 272 -~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (531)
++.+++.+.+||.+.....+.+... .. ... .....++.+++++..+...+...+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 189 AVLGLIFAYRLPKVPAAAPEVFDKKK-YL---------FPK--------------LLWRNLKLLRSDRVLWLAIIGLSYF 244 (1146)
T ss_pred HHHHHHHHhcCcCCCCCCcccccccc-cc---------cHH--------------HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344445556776542111000000 00 000 0011244556666555544443333
Q ss_pred HHHHhhhHHHHHHhHHHHHHHcCCChh-hH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhh
Q 009617 351 LFQQLAGINAVVYYSTSVFRSVGIESD-VA--------------ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFT 415 (531)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~ 415 (531)
.... .....++..++....|++.. .. ..+.+.+.||+++++.+.++.++.+++.+++.+..
T Consensus 245 ~~~~---~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~- 320 (1146)
T PRK08633 245 WFIS---QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP- 320 (1146)
T ss_pred HHHH---HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh-
Confidence 2221 22223334444455566554 22 22223346888877777777776666666655421
Q ss_pred cccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc--cchh
Q 009617 416 WKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG--ISTV 493 (531)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g--~~~~ 493 (531)
+.+..++..++++.+.+.. .+...+++.+..|++.||+++|+.+++..++.++++.+.+.+.. .+ +...
T Consensus 321 -------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~ 391 (1146)
T PRK08633 321 -------SLASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGL 391 (1146)
T ss_pred -------hHHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHH
Confidence 2223333334444444332 33445588899999999999999999999999888777665543 33 3334
Q ss_pred hHHHHHHHHH
Q 009617 494 YLGFATVCLL 503 (531)
Q Consensus 494 ~~~~~~~~~~ 503 (531)
+.+.+.++++
T Consensus 392 ~~~~~~~~~~ 401 (1146)
T PRK08633 392 FYLIALVTLI 401 (1146)
T ss_pred HHHHHHHHHH
Confidence 4444443333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=237.22 Aligned_cols=366 Identities=14% Similarity=0.020 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhh---hhHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL---DAVP 180 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~---~~~~ 180 (531)
.+...++..+.+++....+.+... .+..+.+.+... ..++..+++.+++.++++++|+++||+|||+++.. +.++
T Consensus 16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~ 94 (1140)
T PRK06814 16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNA-LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIG 94 (1140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHH
Confidence 334445555555555544333333 344444443322 23888999999999999999999999999998633 2333
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchh
Q 009617 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
+.+..+.+...+++++++++|+++|++.+...|+..+++.|++++++|++++++.+++.++|.++||++++++... .+|
T Consensus 95 ~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-~~~ 173 (1140)
T PRK06814 95 IAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-GNF 173 (1140)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 3333333444589999999999999999999999999999999999999999999999999999999999999854 789
Q ss_pred HHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchh
Q 009617 261 RTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW 340 (531)
Q Consensus 261 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (531)
++.|+..++..++.+++.+++|+++... ++...+ ....+. ....++.+++++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~-----------------------~~~~~~~~~~~~~~ 227 (1140)
T PRK06814 174 VILVALLMGIAVLGWLASLFIPKTGNAA--PDLKID-RNIIRS-----------------------TITLLKYAKADKRI 227 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec-cchHHH-----------------------HHHHHHHHhcCchH
Confidence 9999555555565555666666654210 000000 000000 01134455666666
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChhhHHHH--------------HHHHhhhcCccHHHHHHhHHHHH
Q 009617 341 KVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESDVAASA--------------LVGAANVFGRKNLLTFSFTGMAA 405 (531)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~--------------~~~~~~~~gr~~~~~~~~~~~~~ 405 (531)
+...+...+..+. ...+..+.|.+. +..|.+....+.+ .+.+.++.++++.+..+.++.++
T Consensus 228 ~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 228 WLAILGISWFWLV----GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGL 303 (1140)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHH
Confidence 6555544433322 222233344444 4456665432222 22234555555555545444444
Q ss_pred HHHHHHHHhhc------------ccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHH
Q 009617 406 SMLLLSLSFTW------------KVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWIS 473 (531)
Q Consensus 406 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 473 (531)
+.+.+.+.... ......+.+..++..++++++.+. ..+...+++.+..|++.+|+++|+.+++..++
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~ 382 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGL-YIVPLFAALQAWANPAHRARVIAANNVLNAAF 382 (1140)
T ss_pred HHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHH-hHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence 44333321000 000001233333444444444433 33345568899999999999999999999999
Q ss_pred HHHHHHhhHHHHHh-hccchhhHHHHHHHHH
Q 009617 474 NFVIGLYFLSVVNK-FGISTVYLGFATVCLL 503 (531)
Q Consensus 474 ~~i~~~~~g~~~~~-~g~~~~~~~~~~~~~~ 503 (531)
..+++.+.|.+.+. .++...+.+.+.++++
T Consensus 383 ~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 383 MVAGTIILALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999998753 3445555544443333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=191.22 Aligned_cols=352 Identities=19% Similarity=0.163 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 184 (531)
.+..++...++.++......+++|.+++.|+++..+. +++..+++.||.+++++.|++.+|+|+|+-++.|+.+++++
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg 91 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG 91 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445566667888888888999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHH---HhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC-----
Q 009617 185 AFLCA---TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN----- 256 (531)
Q Consensus 185 ~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----- 256 (531)
+.+.. ...+|..++++-|+.|.|.+...+.+..+++...++++..+.+++.+..+++|.++||++++.+...
T Consensus 92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~ 171 (422)
T COG0738 92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT 171 (422)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence 99884 6688999999999999999999999999999999998889999999999999999999999887641
Q ss_pred -------------CchhHHHHHHhHHHHHHHHHHhcc--cccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhc
Q 009617 257 -------------PLWWRTMFGLAAIPSILLALGMGL--SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG 321 (531)
Q Consensus 257 -------------~~gwr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (531)
...|+++|...+...+++.+.... .|+.+... ++
T Consensus 172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~-----~~-------------------------- 220 (422)
T COG0738 172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAA-----PS-------------------------- 220 (422)
T ss_pred cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccc-----cc--------------------------
Confidence 124888888888777665555443 23332100 00
Q ss_pred cCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhHHHHHH--------------HH
Q 009617 322 QGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVAASALV--------------GA 386 (531)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~--------------~~ 386 (531)
..+++.....++++++.++...++.+++...+... -.+.+.+..+ .|++......... .+
T Consensus 221 -~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~----gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~l 295 (422)
T COG0738 221 -LGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAI----GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSAL 295 (422)
T ss_pred -ccccccchHHHHHhChHHHHHHHHHHHHHhHHHHH----HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111114667888888888888888777765433 3344444444 6666553322221 13
Q ss_pred hhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHH
Q 009617 387 ANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS 466 (531)
Q Consensus 387 ~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 466 (531)
..|+...+.+.+..++..+.++...+. +....+.+..+.+.+ .....|..++...+..| + .....|..
T Consensus 296 m~~~~~~k~Laf~a~~~ill~~~~~l~---------~g~v~~~~l~~ig~F-~simfPTIfslal~~l~-~-~ts~~s~~ 363 (422)
T COG0738 296 MSRIKPEKYLAFYALIAILLLLAVALI---------GGVVALYALFLIGLF-NSIMFPTIFSLALKNLG-E-HTSVGSGL 363 (422)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHh---------cChHHHHHHHHHHHH-hHHHHHHHHHHHHhccC-c-ccccccee
Confidence 456666777776665555444444443 223334444444443 44567777778888888 3 34445555
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHH
Q 009617 467 LGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVL 506 (531)
Q Consensus 467 ~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 506 (531)
..+..+|+++.|++.|++.|..|....+.....+|.+..+
T Consensus 364 l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~ 403 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVL 403 (422)
T ss_pred eeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 6667899999999999999999977776655566655553
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=185.11 Aligned_cols=357 Identities=20% Similarity=0.194 Sum_probs=264.5
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
+..+..+.+..+...-..+..+|+++.+++|+|+|.+.. |+++++..+.+.+.+++..+++.|+|.++.+..++++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 344444455555666677888999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~ 262 (531)
++.++-... +.+.++.+-.+.|.|.+...+..+.++-+.||++ -+..+|+|.+..++|..+++.+...+.++..|||.
T Consensus 89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~ 166 (395)
T COG2807 89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG 166 (395)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence 999998887 7888999999999999999999999999999987 69999999999999999999999888876568999
Q ss_pred HHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHH
Q 009617 263 MFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (531)
...+-++++++.++.++. ...| ++... ...+..+...+++++.-|.
T Consensus 167 aL~~WAl~allAl~~WlP--q~~r-----~~~~~---------------------------~~~~~~~~~~vw~~~~aW~ 212 (395)
T COG2807 167 ALGFWALLALLALLIWLP--QALR-----EQAAS---------------------------IATKLVSVRKVWRSPLAWQ 212 (395)
T ss_pred HHHHHHHHHHHHHHHHhh--hccc-----ccccc---------------------------cccccccccccccCchhHH
Confidence 999999988777665532 1111 00000 0112223345677765555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHHHHH--------------Hhhh-cCccHHHHHHhHHHHHHH
Q 009617 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVG--------------AANV-FGRKNLLTFSFTGMAASM 407 (531)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------~~~~-~gr~~~~~~~~~~~~~~~ 407 (531)
+.+. +..+...++....|.|.++.+.|++....+..... +.+| -++|+......+++.++.
T Consensus 213 vtLf----mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 213 VTLF----MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred HHHH----HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4443 33444457788889999999999998866644443 3454 466777777777778887
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccc-cccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 408 LLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALL-LPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
+.+.+.. ....+.+ .++++.+.+. ..|+.... ....-.++..+.-.|+.+.++++-.+++|.++|.+.|
T Consensus 289 ~G~~~~P------~~~~~lw---~~llG~G~G~-~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 289 VGLLLAP------GQLPILW---ALLLGLGQGG-AFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred HHHHHhh------hhHHHHH---HHHHhCccch-HHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 7776531 1122222 2333333332 23333323 3344456778888999999999999999999999999
Q ss_pred hhc-cchhhHHHHHHHHHHHHHhhee
Q 009617 487 KFG-ISTVYLGFATVCLLAVLYIAVN 511 (531)
Q Consensus 487 ~~g-~~~~~~~~~~~~~~~~~~~~~~ 511 (531)
..| |...+..++.+.++..+..+..
T Consensus 359 a~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 359 ATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 887 6666666666666655555443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=215.13 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 184 (531)
.++.+++..+...+..+..+.+++.++++|+++..+. |++.+.+.++++++.++.|+++||+|||+++.+++++++++
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg 111 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLG 111 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHH
Confidence 3344455667777778888999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---------------------------------------------------hHHHHHHHHHHHHhhhhhccc
Q 009617 185 AFLCATAQ---------------------------------------------------SVQTMIIGRVLAGIGIGISSA 213 (531)
Q Consensus 185 ~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~ 213 (531)
++++++.+ .+..++++|+++|+|.+..++
T Consensus 112 ~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~ 191 (633)
T TIGR00805 112 SFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP 191 (633)
T ss_pred HHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh
Confidence 99988763 245678999999999999999
Q ss_pred hhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC---------------------chhHHHHHHhHHHHH
Q 009617 214 IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------------------LWWRTMFGLAAIPSI 272 (531)
Q Consensus 214 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---------------------~gwr~~f~~~~~~~~ 272 (531)
.+.+++.|++|+++|+++++++..+..+|.++|+++++.+.+.. .+|+..|++.+++.+
T Consensus 192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~ 271 (633)
T TIGR00805 192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL 271 (633)
T ss_pred cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876321 137888999888887
Q ss_pred HHHHHhcccccc
Q 009617 273 LLALGMGLSPES 284 (531)
Q Consensus 273 ~~~~~~~~~~e~ 284 (531)
+..+.++++|++
T Consensus 272 l~~v~l~~~p~~ 283 (633)
T TIGR00805 272 LTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHhCccc
Confidence 766666666654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=208.70 Aligned_cols=323 Identities=15% Similarity=0.136 Sum_probs=212.6
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh----ccchh-hhhhhhHHHHHHHHHHHHhch------H
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTR-TFQLDAVPLAAGAFLCATAQS------V 194 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~ 194 (531)
..+++.+++|++..+. |++.++..+..++.+++.|+++|| +|||| .++.+.+.++++.+++.+.++ .
T Consensus 22 l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 6677888999999999 999999999999999999999997 68754 567888888888888877654 4
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhcccC------CCCchhHHHHHHh
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLA------GNPLWWRTMFGLA 267 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~------~~~~gwr~~f~~~ 267 (531)
..+++.+++.+++.+...+...++..|..+ ++||++..++.+.+..+|..+++.+.+.+. ....+||+.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~ 179 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL 179 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 566778888999988888888888899874 688999999988888888766555443332 1236899999999
Q ss_pred HHHHHHHHHH-hcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHH
Q 009617 268 AIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG 346 (531)
Q Consensus 268 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (531)
++++++..+. .++.+|+++.. +.++ +++.+.+..++.+++++.++.....
T Consensus 180 ~~l~~~~~~~~~~~~~e~~~~~----~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 180 ALIGVVSLIICFFGTKERYSEI----PKNI-------------------------EKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHHHHcCCEecCCCC----Cccc-------------------------ccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 9888665544 34556654210 0000 0000112234556667665554444
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHH-cC-------------CChhhHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHH
Q 009617 347 AALFLFQQLAGINAVVYYSTSVFRS-VG-------------IESDVAASALVGAANVFGRKNLLTFSFTGMAASMLLLSL 412 (531)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g-------------~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~ 412 (531)
..+..... .....+.+++.+. .+ ..........+.+.||+|+|+.+..+.++.+++.+.+.+
T Consensus 231 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 306 (437)
T TIGR00792 231 YLFYNLAF----NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF 306 (437)
T ss_pred HHHHHHHH----HHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 33332221 1111122222211 11 111122333445689999999998888777777666543
Q ss_pred HhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009617 413 SFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSVV 485 (531)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 485 (531)
.. .+.+..++..++.+.+.+. ..+..+++.+|..+ ++.+|.+.|+.+.+..+|..+++.+.|.+.
T Consensus 307 ~~-------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 307 AG-------SNLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred cc-------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1222233333333333332 34455556777654 566899999999999999999999999999
Q ss_pred Hhhccc
Q 009617 486 NKFGIS 491 (531)
Q Consensus 486 ~~~g~~ 491 (531)
+..|+.
T Consensus 379 ~~~G~~ 384 (437)
T TIGR00792 379 GIIGYV 384 (437)
T ss_pred HHcCCC
Confidence 987763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=201.82 Aligned_cols=315 Identities=15% Similarity=0.061 Sum_probs=204.4
Q ss_pred HhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-----cchhh-hhhhhHHHHHHHHHHHHh---
Q 009617 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRT-FQLDAVPLAAGAFLCATA--- 191 (531)
Q Consensus 121 ~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~--- 191 (531)
...++.+|.+.+|+|+|.++. |+.... .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++.
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 456678999999999999999 988655 555555 89999999998 89887 467788888887777777
Q ss_pred chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch--------hHHH
Q 009617 192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW--------WRTM 263 (531)
Q Consensus 192 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g--------wr~~ 263 (531)
.+++.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+... .+ ||..
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP-EFANTGLITLWGYI 159 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccHHH
Confidence 45666777788889888888899999999999999999999999999999999999999887744 45 9999
Q ss_pred HHHhHHHHHHHHHHhcc-cccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHH
Q 009617 264 FGLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342 (531)
Q Consensus 264 f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (531)
|++.++..++..+..++ .||+++. ++++++..+. .+..++++++++..+.
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA--------------------------VLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH--------------------------HHHHHHHHHHhcCchH
Confidence 99998877665555443 4554321 0000000000 0112344455543222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHH---------------HHHHHhhhcCccHHHHHHhHHHHHHH
Q 009617 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAAS---------------ALVGAANVFGRKNLLTFSFTGMAASM 407 (531)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~~~~~gr~~~~~~~~~~~~~~~ 407 (531)
........++... .+.....+.+.+..+.|++....+. ..+.+.||+|+|+.+..+.++.+++.
T Consensus 211 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~ 289 (356)
T TIGR00901 211 ALLLLLLIVLYKL-GDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTN 289 (356)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2222222222222 2333344455555557776653221 12235899999999888887777666
Q ss_pred HHHHHHhhccc---ccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHH
Q 009617 408 LLLSLSFTWKV---LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHW 471 (531)
Q Consensus 408 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 471 (531)
.++.+...... .+....+......++...+.+ ...+...++..|.+|+++||+.+|+.++..+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 290 AGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHhcCcccccccchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 55443211000 000111222222222233333 3445566699999999999999999988654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-23 Score=203.06 Aligned_cols=356 Identities=20% Similarity=0.150 Sum_probs=240.0
Q ss_pred HHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH
Q 009617 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (531)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 189 (531)
+.+.+...+...+....++.+..++.-|.... +++..+..+...+.++++|.++||++||++++.+-++.++..++.+
T Consensus 16 w~a~~iS~lG~~~~~va~~wlv~~lt~S~~~v--alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~ 93 (524)
T PF05977_consen 16 WIAQLISNLGDWMQTVALAWLVTQLTGSPLMV--ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLA 93 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence 34444445555555667777777777777677 9999999999999999999999999999999999888776655444
Q ss_pred Hh-----chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHH
Q 009617 190 TA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (531)
Q Consensus 190 ~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f 264 (531)
+. .+.+.+++.-++.|++.+...|...+++.|..|+++...+.++.+...++..++||.++|.+... .|-.+.|
T Consensus 94 ~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~-~G~~~~f 172 (524)
T PF05977_consen 94 VLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF-FGAAAAF 172 (524)
T ss_pred HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHH
Confidence 32 47888999999999999999999999999999999999999999999999999999999998743 6778888
Q ss_pred HHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHH
Q 009617 265 GLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVS 344 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (531)
++.++..++.++....++.+++ .++.. .++..+. -+..++-+.+++..+..+
T Consensus 173 ~inalsfl~~i~~l~~~~~~~~---~~~~~--~e~~~~~-----------------------l~~G~ryv~~~~~l~~~l 224 (524)
T PF05977_consen 173 LINALSFLISILALLRWKPPPP---PSSLP--RERFFSA-----------------------LREGLRYVRSSPPLRSVL 224 (524)
T ss_pred HHHHHHHHHHHHHHHHcccccc---ccccc--hhhhhhh-----------------------HHHHHHHHhcchHHHHHH
Confidence 8887766554444433332211 00000 0000000 112233334444444443
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHH
Q 009617 345 VGAALFLFQQLAGINAVVYYSTSVFR-SVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASMLL 409 (531)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~ 409 (531)
+...++.+. ........|.+.+ ..|.+.... +.....+.+++++++.+..+.++.+++.+.
T Consensus 225 ~~~~~~~l~----~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~ 300 (524)
T PF05977_consen 225 LRSFLFNLF----ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLL 300 (524)
T ss_pred HHHHHHHHh----hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHH
Confidence 332222221 1122223444433 344444422 222223456667777777787777777766
Q ss_pred HHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 009617 410 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG 489 (531)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 489 (531)
+++.. +.+...+..++.+.+... ......+...+..|++.||+++++++++...+..+|..+.|.+.+..|
T Consensus 301 lal~~--------~~~~~~~~l~l~G~~~~~-~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 301 LALSP--------SFWLALIALFLAGAAWII-ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred Hhcch--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65531 223333333333333332 333444578899999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhh
Q 009617 490 ISTVYLGFATVCLLAVLYIA 509 (531)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~ 509 (531)
....+.+.+++.+++.++.+
T Consensus 372 ~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 372 VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888777666656555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-22 Score=193.86 Aligned_cols=369 Identities=19% Similarity=0.187 Sum_probs=222.3
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
.+..+..+++.....++.....+..++++.+|+|-++ .. .|+.+...++.+++.++.|+++|.||||.+++.+.++.
T Consensus 42 ~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~-~~--~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 42 FIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSD-NW--SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCc-cc--hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 3444444555555555666666778899999999875 44 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhH
Q 009617 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (531)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr 261 (531)
.+|++.++-++|...++++..+.|+|.|... .....++|..|.|.|+...++...........++.++..+..+ .+||
T Consensus 119 vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-~~WR 196 (599)
T PF06609_consen 119 VVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-SGWR 196 (599)
T ss_pred HhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-CCcc
Confidence 9999999999999999999999999977655 4556689999999998877776665555555677777665533 6899
Q ss_pred HHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHh---------------------Cc--cc--hHHHHH-
Q 009617 262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLY---------------------GK--ER--VSEVML- 315 (531)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~---------------------~~--~~--~~~~~~- 315 (531)
|.|++.+++..+.+++.+++..+|++...++++...++.++++. +. .+ ......
T Consensus 197 w~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~ 276 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAP 276 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhh
Confidence 99999988876655444333222322222222111111122110 00 00 000000
Q ss_pred ---------H-HHHhccCCCCCccchhhhhcc-chhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCh--------
Q 009617 316 ---------D-LTNAGQGSAEPEAGWFDLFSS-RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES-------- 376 (531)
Q Consensus 316 ---------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------- 376 (531)
- ..-+.....+++.--.+++++ +.+...++..++.. ...+....+|+......++-+.
T Consensus 277 lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G---~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~ 353 (599)
T PF06609_consen 277 LVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISG---MNFFSVNILWPQQVVNVFGSDPISITEIGW 353 (599)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhccCCCcccceeeh
Confidence 0 000000111222233456665 33333222222222 1223333445444443332221
Q ss_pred ---------hhHHHHHHHHhhhcCcc-HHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCccccc
Q 009617 377 ---------DVAASALVGAANVFGRK-NLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVP 446 (531)
Q Consensus 377 ---------~~~~~~~~~~~~~~gr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (531)
.....+++.+..+++|- +.++++.+++.+++.++... .+.+....+...++.+.+.+....+.
T Consensus 354 ~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~------~~~n~~~~i~~~~l~g~giG~~~~~~- 426 (599)
T PF06609_consen 354 ISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV------RPDNKNAAIAFLVLAGFGIGGILVPA- 426 (599)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc------cCCCcchHHHHHHHHHHhHHHHHHHH-
Confidence 12223334456666664 44456655555544444332 12222233333444444444333333
Q ss_pred ccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009617 447 ALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV 485 (531)
Q Consensus 447 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 485 (531)
...+.-..|++.-|++.|+..+++.+|+.++..++..++
T Consensus 427 ~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 427 IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 335566789999999999999999999999998886655
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=202.59 Aligned_cols=147 Identities=24% Similarity=0.259 Sum_probs=125.0
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh-ccchhhhhhhhHHHHHHHHHHHHhc-hHHHHHHHHH
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRV 202 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 202 (531)
....++.+++|++..+. +++.+.+........+++|+++|| +|||++++.+.++.+++.+++++++ +.+.++++|+
T Consensus 43 ~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~ 120 (500)
T PRK09584 43 IMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMA 120 (500)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35667789999999888 888888776666667899999999 5999999999999999999998874 5667778899
Q ss_pred HHHhhhhhccchhhhhhhhcCCccc--cchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHH
Q 009617 203 LAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL 274 (531)
Q Consensus 203 l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~ 274 (531)
++|++.|...+...+++.|++|+++ |..++++++.+.++|.++||++++++.+. .|||+.|++.++..++.
T Consensus 121 l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 121 TIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK-YGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHH
Confidence 9999999989999999999998653 45688999999999999999999999854 79999999887654443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=192.18 Aligned_cols=360 Identities=13% Similarity=0.006 Sum_probs=226.9
Q ss_pred HHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHH--HHHHHHHHHHHHHhH-HhhhhhccchhhhhhhhHHH-
Q 009617 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWI--VSSLLAGATVGSFTG-GSLADKFGRTRTFQLDAVPL- 181 (531)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~--~s~~~~~~~i~~~~~-g~l~dr~Grr~~~~~~~~~~- 181 (531)
+..++..++..+...+...|.+|.+.+|.|.+.+++ |++ .++..+...+.++++ ++..||+||||.+++.+.+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 445566678888888999999999999999999999 987 466788888888888 44799999999876555332
Q ss_pred HHHHHHHH-H--hch-HHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q 009617 182 AAGAFLCA-T--AQS-VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257 (531)
Q Consensus 182 ~~~~~~~~-~--~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 257 (531)
++.....+ + ..+ ...++..-++.++..+...+..-++..|..++++++...+....+..+|.++|+...+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~- 159 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK- 159 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 22222222 1 222 334445555666666767777777888998888888888888888899999999888777744
Q ss_pred chhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhcc
Q 009617 258 LWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS 337 (531)
Q Consensus 258 ~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (531)
.|||..|++.+++.++..+..++++|+++. +++.++ ++..++++++|+
T Consensus 160 ~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~-----------------------------~~~~~~~~~l~~ 207 (390)
T TIGR02718 160 FGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL-----------------------------ARRASLFRFFRR 207 (390)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch-----------------------------hhHHHHHHHHcC
Confidence 799999999998887655555555443210 000000 001124556666
Q ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHH---------------HHHHhhhcCccHHHHHHhHH
Q 009617 338 RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASA---------------LVGAANVFGRKNLLTFSFTG 402 (531)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------~~~~~~~~gr~~~~~~~~~~ 402 (531)
+..+......++..... .....+.+.+..+.|++....+.. .+.+.||+|+|+.+..+.++
T Consensus 208 ~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~ 283 (390)
T TIGR02718 208 PLAWSLLALALLSAMTA----VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGL 283 (390)
T ss_pred cCHHHHHHHHHHHHHHH----HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 65555444433333221 222223445556678776632222 22358999999988877665
Q ss_pred HHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccCh-hhhhHHHHHHHHHHHHHHHHHHHhh
Q 009617 403 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS-RIRAKAVALSLGMHWISNFVIGLYF 481 (531)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~i~~~~~ 481 (531)
.++..+......... .............+.....+... +.......+..++ +.+++.+++.+...++|..++|.+.
T Consensus 284 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~ 360 (390)
T TIGR02718 284 AGSLALLWFAQAAFW--LAPGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA 360 (390)
T ss_pred HHHHHHHHHHHHHcc--cCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 533332222111000 00011111111111112222222 2223344444454 7899999999999999999999999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHH
Q 009617 482 LSVVNKFGISTVYLGFATVCLLAVLY 507 (531)
Q Consensus 482 g~~~~~~g~~~~~~~~~~~~~~~~~~ 507 (531)
|.+++..|+...|.+.+++.+++.++
T Consensus 361 G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 361 GYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 99999999888888877766665544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-21 Score=192.23 Aligned_cols=169 Identities=12% Similarity=0.079 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
+|.++..........+.. ..++...+.+++++|++..+. +++.++. ..+.+++++.|+++||+|+|+++.++.+++
T Consensus 26 Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~ 101 (591)
T PTZ00207 26 RFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF 101 (591)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 344444444444443332 244567788999999999999 8888774 455678889999999999999999999999
Q ss_pred HHHHHHHHHh------chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHH-HHHHhhcccC
Q 009617 182 AAGAFLCATA------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL-AALVAGLPLA 254 (531)
Q Consensus 182 ~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~ 254 (531)
++++++++++ ++++.+++.|++.|+|.+...+.+...+.+||| ++||+++|+...+.++|.+ ++++..+++.
T Consensus 102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997 689999999999999999999999999999997 5699999999999999986 4666666554
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHh
Q 009617 255 GNPLWWRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 255 ~~~~gwr~~f~~~~~~~~~~~~~~ 278 (531)
.+|++.|++.+++.++..++.
T Consensus 181 ---~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 181 ---DNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred ---HhHHHHHHHHHHHHHHHHHHH
Confidence 468888988888886654443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=183.67 Aligned_cols=380 Identities=14% Similarity=0.102 Sum_probs=239.5
Q ss_pred HHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhh----hccchhhhhhh-hHHHHH
Q 009617 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTFQLD-AVPLAA 183 (531)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~~ 183 (531)
++...+...+......+.++.+.+++|.+.... +++..+..+...+.+++.|+++| |+|||+.++++ .+...+
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~ 86 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAF 86 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHH
Confidence 344445556667777777777889999999888 99999999999999999999999 59999998874 666666
Q ss_pred HHHHHHHhchHH-----------------HHHHHHHHHHhhhhhccchhhhhhhhcCCcccc--chhHHHHHHHHHHHHH
Q 009617 184 GAFLCATAQSVQ-----------------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGIL 244 (531)
Q Consensus 184 ~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~ 244 (531)
+.++.++++++. .++++-.+..++.....++..++++|.+|+++| +.+.++.+...++|.+
T Consensus 87 ~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i 166 (477)
T TIGR01301 87 AVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV 166 (477)
T ss_pred HHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 667777776653 223333344557777888899999999998865 6899999999999999
Q ss_pred HHHHhhcccC--C-------C-----CchhHHHHHHhHHHHHHHHHH-hcccccchhHHHHhCChHHHHHHHHHHhCccc
Q 009617 245 AALVAGLPLA--G-------N-----PLWWRTMFGLAAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKER 309 (531)
Q Consensus 245 ~g~~~~~~l~--~-------~-----~~gwr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (531)
+|+.+++... . . ..+.|+.|++.+++.++..+. .+..+|.|... +++.++ + +..+
T Consensus 167 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~---~~~~--- 236 (477)
T TIGR01301 167 LGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S---EAAP--- 236 (477)
T ss_pred HHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h---hccc---
Confidence 9999987641 0 0 026799999988877665544 45578865311 000000 0 0000
Q ss_pred hHHHHHHHHHhccCCCCCccchhhhhcc-----chhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH--cCCCh------
Q 009617 310 VSEVMLDLTNAGQGSAEPEAGWFDLFSS-----RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS--VGIES------ 376 (531)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~------ 376 (531)
.++...+..++++++. +..+.+.+..++.++ ++..+..|.+.+..+ ++-++
T Consensus 237 ------------~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~----a~f~~~~y~T~~vg~~v~~~~~~~~~~y 300 (477)
T TIGR01301 237 ------------PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWI----AWFPFILFDTDWMGREVYGGSVNQGAKY 300 (477)
T ss_pred ------------ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHH----HHHHHHHhccHHHHHHHcCCCCcchhHH
Confidence 0000011123333332 233333332222222 223333333322221 11100
Q ss_pred ------------------hhHHHHHHHHhhhcCc-cHHHHHHhHHHHHHHHHHHHHhhccc-----------ccCcc--h
Q 009617 377 ------------------DVAASALVGAANVFGR-KNLLTFSFTGMAASMLLLSLSFTWKV-----------LAPYS--G 424 (531)
Q Consensus 377 ------------------~~~~~~~~~~~~~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~ 424 (531)
...+..+..+.+++|+ |+....+.++.++++....+...... ..+.. .
T Consensus 301 ~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 380 (477)
T TIGR01301 301 DDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIK 380 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhH
Confidence 0122233345788885 67778888888888877765432111 00000 1
Q ss_pred hHHHHHHHHHHHHHhcCcccccccccccccCh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc--cchhhHHHHHH
Q 009617 425 TLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS--RIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG--ISTVYLGFATV 500 (531)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g--~~~~~~~~~~~ 500 (531)
+..++.....+..+. ....++++++++..++ +..|..+|+.|.+..+..++.....|.+.+..| ....+.+.++.
T Consensus 381 ~~~l~~~~~~Gi~~A-~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~ 459 (477)
T TIGR01301 381 ASALIVFAILGIPLA-ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVA 459 (477)
T ss_pred HHHHHHHHHhhHHHH-HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHH
Confidence 333333444444443 3456778888888884 566999999999999999999999888777665 34556666777
Q ss_pred HHHHHHHhheecccCCC
Q 009617 501 CLLAVLYIAVNVVETKG 517 (531)
Q Consensus 501 ~~~~~~~~~~~~~~~~~ 517 (531)
.++++++.++.+|+.+.
T Consensus 460 ~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 460 AFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 77888888888887654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-19 Score=177.15 Aligned_cols=148 Identities=23% Similarity=0.223 Sum_probs=121.7
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-cchhhhhhhhHHHHHHHHHHHHhc-hHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRVL 203 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l 203 (531)
...++.+++|.++.+. +.+.+.+.....++++++|+++||+ |||++++++.++.+++.++.+... +...++++..+
T Consensus 32 L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~l 109 (493)
T PRK15462 32 LILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAI 109 (493)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4456678899999999 9999999999999999999999999 999999999999999988776543 22334444555
Q ss_pred HHhhhhhccchhhhhhhhcCCcc--ccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHH
Q 009617 204 AGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~ 276 (531)
.++|.|...+...++++|.+|++ +|..++++.+.+.++|..++|++.+++.+. .||++.|.+.++..++..+
T Consensus 110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-~Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-YSWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHH
Confidence 56667777787889999999875 689999999999999999999999999754 7999999987664444333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=171.48 Aligned_cols=381 Identities=14% Similarity=0.079 Sum_probs=236.1
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh-ccchhhhhhhh
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDA 178 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~ 178 (531)
.++...+..+|+..|..++.....+....+...|.+++.++. .++.+.|.....+..+++|++.|| +|-|..-++-+
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~ 117 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC 117 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH
Confidence 345667778888889999999988888889999999999999 999999999999999999999997 68887777766
Q ss_pred HHHHHHHHHHHH---hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 179 VPLAAGAFLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 179 ~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
....++.++++. .+.+|.++++||+.|+|.-...+....++.-||..||.+.++|+.....-+|..+-..+.+++.+
T Consensus 118 ~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 118 IFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 677777776654 68999999999999999888888899999999999999999999998888887665555555543
Q ss_pred CCchhHHHH--HHhHHHHHHHHHHhcccccchhHHHHhC-ChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchh
Q 009617 256 NPLWWRTMF--GLAAIPSILLALGMGLSPESPRWLFQQG-KKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWF 332 (531)
Q Consensus 256 ~~~gwr~~f--~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (531)
. .+ ..| .....+++...+-...+..+-......+ .++.+++.+. +++....+.++.+-.
T Consensus 198 ~-~~--~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh---------------~e~g~~Ge~pkLtdv 259 (459)
T KOG4686|consen 198 T-MG--RMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILH---------------LEEGFLGEEPKLTDV 259 (459)
T ss_pred H-HH--HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh---------------hhcCcccCCcccccc
Confidence 1 11 000 0000000000000000000000000000 0111111111 111111122222223
Q ss_pred hhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh--------------hHHHHHHHHhhhcCccHHHHH
Q 009617 333 DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--------------VAASALVGAANVFGRKNLLTF 398 (531)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~~~~~~~gr~~~~~~ 398 (531)
.-++++.|....++...+... +-.+..-...+.+.+|+++. ......+.++|+.|++..++.
T Consensus 260 ~~f~ppfw~~~iicv~yyva~----fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~ 335 (459)
T KOG4686|consen 260 NTFYPPFWVLVIICVLYYVAW----FPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA 335 (459)
T ss_pred cccCccHHHHHHHHHHHHHHH----HHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence 334455554444443333221 22222223344566788765 334445667999999877766
Q ss_pred HhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHH
Q 009617 399 SFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIG 478 (531)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 478 (531)
+..+..+..-..... +.+.+.....+.+..+.+ .....+.+++.++|.++.|++.|..+.+.++|-++.|
T Consensus 336 ~a~~~tl~~H~~l~F---------t~lsPy~~m~~lGLsysl-lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~ 405 (459)
T KOG4686|consen 336 SACILTLLGHSGLFF---------TFLSPYTSMTFLGLSYSL-LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIP 405 (459)
T ss_pred HHHHHHHHHhhhHHh---------hhccHHHHHHHHhhhHHH-HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHh
Confidence 554443333222211 112233444455554443 2334566778888999999999999999999999999
Q ss_pred HhhHHHHHhhc-cc---hhhHHHHHHHHHHHHHhheeccc
Q 009617 479 LYFLSVVNKFG-IS---TVYLGFATVCLLAVLYIAVNVVE 514 (531)
Q Consensus 479 ~~~g~~~~~~g-~~---~~~~~~~~~~~~~~~~~~~~~~~ 514 (531)
++.|.+.|.-| +. ..|+....+.+.+..+.+.+-++
T Consensus 406 Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 406 IIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred hhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheecc
Confidence 99999998766 32 33444455555555555544333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=173.52 Aligned_cols=361 Identities=19% Similarity=0.163 Sum_probs=233.7
Q ss_pred HHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhcc-chhhhhhhhHHHHHHHHHH
Q 009617 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-RTRTFQLDAVPLAAGAFLC 188 (531)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~ 188 (531)
+..++...+..+.+.|.++..-++.|.|..|+ |.+.++..+...++++++|.++||++ +|+++.+..++.++.....
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33445555556677788888888999999999 99999999999999999999999986 5778878888888877777
Q ss_pred HHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHh-hcccCCC--CchhHHHHH
Q 009617 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA-GLPLAGN--PLWWRTMFG 265 (531)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~~~--~~gwr~~f~ 265 (531)
...++++.+++..++..+......|..-++..+... +++.-.|-.-.++++|.+++.+. ++.+... ..+..+.++
T Consensus 86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PF03825_consen 86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY 163 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 888999999888888888888888888888888776 34566666677777776666433 1222111 122334566
Q ss_pred HhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHH
Q 009617 266 LAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (531)
Q Consensus 266 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (531)
+.++.+++.....+.+|+.|.. ++.+++. ++....+..+++|+|.....++
T Consensus 164 i~~~~~~ll~~~~l~lp~~~~~---~~~~~~~--------------------------~~~~~~~~~~llk~~~~~~Fll 214 (400)
T PF03825_consen 164 IAAILSLLLAGFALFLPKTPPK---RSAKESV--------------------------KKLLGLDALKLLKNPRFLVFLL 214 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCccc---cccCCCc--------------------------ccccchHHHHHhcCccHHHHHH
Confidence 6666665555555667777621 0000000 0011122346777776665555
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHcC-CChhhHHHHH--------------HHHhhhcCccHHHHHHhHHHHHHHHHH
Q 009617 346 GAALFLFQQLAGINAVVYYSTSVFRSVG-IESDVAASAL--------------VGAANVFGRKNLLTFSFTGMAASMLLL 410 (531)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~--------------~~~~~~~gr~~~~~~~~~~~~~~~~~~ 410 (531)
..++.... ......|.+.++++.| .+....+... ..+..|+|.++++.++.+..++=..++
T Consensus 215 ~~~l~~~~----~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~ 290 (400)
T PF03825_consen 215 AAFLIGIS----HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY 290 (400)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 44333322 3344455566667766 4444322221 223677788888888888877777776
Q ss_pred HHHhhcccccCcchhHHHHH----HHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHH-HHHHHHHHHHhhHHHH
Q 009617 411 SLSFTWKVLAPYSGTLAVLG----TVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM-HWISNFVIGLYFLSVV 485 (531)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~~~g~~~ 485 (531)
.... + +.+..... ..+.+..++.... ....|+.+..|++.|+++.++++.. ..+|..++..++|+++
T Consensus 291 a~~~------~-~~~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 291 AYFS------D-PWPFIVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred HHhc------C-CcHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6531 0 11221111 1234555544333 3334899999999999999998876 5799999999999999
Q ss_pred Hhhccchh------hHHHHHHHHHHHHHhheecccC
Q 009617 486 NKFGISTV------YLGFATVCLLAVLYIAVNVVET 515 (531)
Q Consensus 486 ~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~ 515 (531)
|..|.+.. +.+.+++.++..++.+++.||+
T Consensus 363 ~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 363 DAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99885543 3444444444444444444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=183.93 Aligned_cols=326 Identities=13% Similarity=0.101 Sum_probs=205.1
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh----ccch-hhhhhhhHHHHHHHHHHHHhch------
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRT-RTFQLDAVPLAAGAFLCATAQS------ 193 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------ 193 (531)
.+..++.+++|++...+ |.+.++..+..++..|+.|+++|| +||| +.++.+.+..+++.++....++
T Consensus 31 ~l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~ 108 (444)
T PRK09669 31 FLAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK 108 (444)
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 36677889999999999 999999999999999999999998 7875 5555777777777766555543
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhhhcC-CccccchhHHHHHHHHHHHHHHHHHhhcc----cCC--CCchhHHHHHH
Q 009617 194 VQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLP----LAG--NPLWWRTMFGL 266 (531)
Q Consensus 194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~----l~~--~~~gwr~~f~~ 266 (531)
+..+++..++.+++......+..++.+|+. +++||.+..++-..+..+|..+++.+... +.+ ...+|+..+.+
T Consensus 109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i 188 (444)
T PRK09669 109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 455666677777777777777888999998 45789988888887777776666554322 221 13589999988
Q ss_pred hHHHHHHHHHHhc-ccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHH
Q 009617 267 AAIPSILLALGMG-LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (531)
Q Consensus 267 ~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (531)
.++++++..+..+ ..+|.++. +++ ++.+....++.+++++.++.+..
T Consensus 189 ~~ii~~v~~~~~~~~~~e~~~~----~~~----------------------------~~~~~~~~~~~~~~n~~~~~l~~ 236 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKERYTP----EVD----------------------------NSSSVWKDLKLLLGNSQWRIMFI 236 (444)
T ss_pred HHHHHHHHHHHHhCCeEEecCC----CCc----------------------------CCCCHHHHHHHHhCCchHHHHHH
Confidence 8887765544433 34443210 000 00011234556677777776655
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHc---------C-CChhhHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhh
Q 009617 346 GAALFLFQQLAGINAVVYYSTSVFRSV---------G-IESDVAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFT 415 (531)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g-~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~ 415 (531)
..++.............+|..+..... + +.......+...+.||+|+|+....+.++..+..+.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-- 314 (444)
T PRK09669 237 FNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-- 314 (444)
T ss_pred HHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--
Confidence 444332222111122222222221110 0 0001122233457899999999887766555433322221
Q ss_pred cccccCcchhHHHHHHHHHHHHHhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 009617 416 WKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF 488 (531)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~ 488 (531)
.+.+.+..++..++.+.+.+ ...+..+++++|..+ .+..|...|+.+.+..+|.++++.+.|.+.+..
T Consensus 315 ----~~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 315 ----PPSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred ----CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11122333333344444443 345666778888764 344677889999999999999999999999988
Q ss_pred ccc
Q 009617 489 GIS 491 (531)
Q Consensus 489 g~~ 491 (531)
|+.
T Consensus 390 Gy~ 392 (444)
T PRK09669 390 DYV 392 (444)
T ss_pred CCC
Confidence 863
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-20 Score=181.87 Aligned_cols=372 Identities=15% Similarity=0.073 Sum_probs=220.8
Q ss_pred HHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhcc-----chhhhhhhhHH
Q 009617 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQLDAVP 180 (531)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~ 180 (531)
+.++...++..++.........+.+.+++|++..++ +...++..+.+.+-.+ +|+++||++ ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 334444556666663344456777888999999999 9999999999999766 999999998 77777777776
Q ss_pred HH-HHHHHHHHhchHHHHH-HHHHHHHhhhhhccchhhhhhhhcCCccccchhHH---HHHHHHHHHHHHHHHhhcccCC
Q 009617 181 LA-AGAFLCATAQSVQTMI-IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS---VNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 181 ~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~---~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
.+ ++....+..++..... +.+++.+++.+...++.-++..|..+ +++....+ .......+|.++|+.+++.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 4434444445544444 47899999999999999999999998 55544333 3333345899999999998875
Q ss_pred CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhh
Q 009617 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335 (531)
Q Consensus 256 ~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (531)
. .+|+..|++.+++.++..+..++++|++.....+.++++.. ..... .... ....+ +...+.+..+
T Consensus 184 ~-~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~-~~~~~--~~~~---~~~~~-------~~~~~l~~~l 249 (468)
T TIGR00788 184 K-TLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM-NMALL--TLGV---LANVK-------VQILGLRGAI 249 (468)
T ss_pred h-cCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh-hhhhh--hhhH---HHHHH-------HHHHHHHHHH
Confidence 4 68999999998888776666667777641100000000000 00000 0000 00000 0011122334
Q ss_pred ccchhHHHHHHHHH-HHHHHhhhHHHHHHhHHHHHHHcCCChhhHH--------------HHHHHHhhhcCccHHHHHHh
Q 009617 336 SSRYWKVVSVGAAL-FLFQQLAGINAVVYYSTSVFRSVGIESDVAA--------------SALVGAANVFGRKNLLTFSF 400 (531)
Q Consensus 336 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~~~~ 400 (531)
+++..+......++ +... .+. ....+. ......|+++...+ .......+|++.|+++.++.
T Consensus 250 ~~~~i~~~l~fifl~~~~~--~~~-~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~ 325 (468)
T TIGR00788 250 QLLEIAKPLIFIFLSYANL--PGA-SGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTT 325 (468)
T ss_pred hcHHHHHHHHHHHHHHhhc--CCC-CceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 44444333332222 1111 111 000000 11123455444222 22222357788888888887
Q ss_pred HHHHHHHHHHHHHh-hccccc-CcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHH
Q 009617 401 TGMAASMLLLSLSF-TWKVLA-PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIG 478 (531)
Q Consensus 401 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 478 (531)
++.+++.+...+.. .+.... .......+....+...+++....+.. .++.+..|++.+|+..++.+++.++|..+++
T Consensus 326 ~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~ 404 (468)
T TIGR00788 326 LLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSSVSG 404 (468)
T ss_pred HHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHHHHH
Confidence 77777665432111 010000 01112223333444445555555554 4888999999999999999999999999999
Q ss_pred HhhHHHHHhhc-----cchhhHHHHHH
Q 009617 479 LYFLSVVNKFG-----ISTVYLGFATV 500 (531)
Q Consensus 479 ~~~g~~~~~~g-----~~~~~~~~~~~ 500 (531)
.++|.+.+..| +...+....+.
T Consensus 405 ~~gg~l~~~~g~~~~~~~~~~~~i~i~ 431 (468)
T TIGR00788 405 FLGVLLMETIGITCDNSNNLWLLILGH 431 (468)
T ss_pred HHHHHHHHHcCCCcccccchHHHHHHH
Confidence 99999999888 66555544433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=158.59 Aligned_cols=388 Identities=14% Similarity=0.062 Sum_probs=257.3
Q ss_pred cccCcchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhh
Q 009617 96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175 (531)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 175 (531)
.+..+++|.+++.+++.++.+++.+..++++..+....|| +.+.. -|+.-+|++.+....+++-|+.|++|-|...+
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence 3556778999999999999999999999999999999999 55556 79999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHh------chHH--HHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHH
Q 009617 176 LDAVPLAAGAFLCATA------QSVQ--TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (531)
Q Consensus 176 ~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 247 (531)
++.++-+++..+-..+ +.++ ....+..+.+.++-.....-..+..-||+++||..+..+-..+..+|.++|.
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ 193 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF 193 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence 9999999999887665 2344 5667778888877666566567888999999999999999999999999999
Q ss_pred HhhcccCCCC-----chhHH--HHHHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHH
Q 009617 248 VAGLPLAGNP-----LWWRT--MFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319 (531)
Q Consensus 248 ~~~~~l~~~~-----~gwr~--~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (531)
++...+..+. ..|-. .|+..++++.+.+++. +..++.|+. .+..+....+
T Consensus 194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t-----Pps~s~~~~~----------------- 251 (480)
T KOG2563|consen 194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT-----PPSASQAALQ----------------- 251 (480)
T ss_pred hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCchhHhhhh-----------------
Confidence 9988877532 34654 3554555543333333 233443321 0000000000
Q ss_pred hccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh--------------hHHHHHHH
Q 009617 320 AGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--------------VAASALVG 385 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~~ 385 (531)
+..-..+.+++++++.+....+++...... ++.+...+...+...|+... ..+...+.
T Consensus 252 ----~~~f~~si~~~~~n~~F~il~~~ygi~~g~----F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi 323 (480)
T KOG2563|consen 252 ----DASFPKSIKSCFKNRQFIILAICYGIGLGL----FNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI 323 (480)
T ss_pred ----cCcHHHHHHHHHcCccHHHHHHHHhhhHHH----HHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh
Confidence 111344567788888777766665555443 33333333322333344321 33444455
Q ss_pred HhhhcCccH-HHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHH
Q 009617 386 AANVFGRKN-LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 464 (531)
Q Consensus 386 ~~~~~gr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 464 (531)
+.||.+.-+ ..++......++...+.... ......+.+...+...+.+..+..|+..-+..|..-|..-++..|
T Consensus 324 i~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-----~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsG 398 (480)
T KOG2563|consen 324 IADKTKKFKLTTLVLYLFALVGTLMLLTCT-----LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSG 398 (480)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-----ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccce
Confidence 688886544 34444444444422221111 011122233334444455566788888878888855577788999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhc----cchhhHHHHHHHHHHHHHhheecccCCCCCHH
Q 009617 465 LSLGMHWISNFVIGLYFLSVVNKFG----ISTVYLGFATVCLLAVLYIAVNVVETKGRSLE 521 (531)
Q Consensus 465 ~~~~~~~~g~~i~~~~~g~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (531)
+.+..+++-+++-..+.+...+..+ +...-+.....+.+..++..+++++.++++.|
T Consensus 399 ll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 399 LLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred eEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 9999999999999999999888776 44445556666666666666666655544443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-19 Score=165.11 Aligned_cols=357 Identities=17% Similarity=0.142 Sum_probs=214.1
Q ss_pred HHhhHhHHhhhhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH--HHH-HHHH
Q 009617 114 ILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA--AGA-FLCA 189 (531)
Q Consensus 114 ~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~--~~~-~~~~ 189 (531)
+...+..+..-|..+ .+.++.|++.+++ |.+.++..+...+.+++.|.++||+|.||-++..+.+.. .+. +...
T Consensus 17 f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v 94 (412)
T PF01306_consen 17 FFYFFIWGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYV 94 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555554 4556799999999 999999999999999999999999997776544333222 122 2222
Q ss_pred Hh----chH-HHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHH
Q 009617 190 TA----QSV-QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (531)
Q Consensus 190 ~~----~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f 264 (531)
+. .|+ ...+++-+..|+...+..|+.-+++.++.. +.+.-.|-.-+++++|.+++..++|.+.. .+-...|
T Consensus 95 ~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~--i~p~~~f 170 (412)
T PF01306_consen 95 FGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFN--INPNIIF 170 (412)
T ss_dssp HHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeee--eCccHHH
Confidence 22 222 223333344444444444555555544432 23677788888999999999999998874 4566788
Q ss_pred HHhHHHHHHHHHHhccc-ccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCc---cchhhhhccchh
Q 009617 265 GLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPE---AGWFDLFSSRYW 340 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 340 (531)
|+..+.+++..++.++. |+.++.....+... .++++ ....+++|.+.+
T Consensus 171 wi~s~~~~il~lll~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~l~k~~~f 222 (412)
T PF01306_consen 171 WIASAAAIILLLLLLLLKPDVPPQAEVADALG----------------------------AKKDKVSLKDVLSLFKMRNF 222 (412)
T ss_dssp HHHHHHHHHHHHHHHSS---SSSSS-SSTTSS----------------------------S------HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCchhhhhhcccc----------------------------cCCCCCcHHHHHHHhcchhH
Confidence 87766665554444333 33332111111000 00111 123466777766
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCh----h--------------hHHHHHHHHhhhcCccHHHHHHhHH
Q 009617 341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES----D--------------VAASALVGAANVFGRKNLLTFSFTG 402 (531)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~--------------~~~~~~~~~~~~~gr~~~~~~~~~~ 402 (531)
+.+.+........ |.......+.++..+--+. . ........+.+|+|.|+.++++..+
T Consensus 223 w~~~l~v~g~~~~----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i 298 (412)
T PF01306_consen 223 WFFVLFVIGVAAI----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHH
Confidence 6655433322221 2222222232332222111 1 1122223358999999999999998
Q ss_pred HHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHH-HHHHHHHHHHHHHhh
Q 009617 403 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS-LGMHWISNFVIGLYF 481 (531)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~ 481 (531)
+.+=....++.. +.+.....-.+-+.-+.....+..- |+++.+|++..++...+. +...+++.++.+.+.
T Consensus 299 ~~iRi~~~~~~~--------~~~~i~~~klLH~~e~~l~lva~fk-YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~ 369 (412)
T PF01306_consen 299 MAIRIIGSGFAT--------NPWVISLIKLLHALEFPLLLVAAFK-YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLA 369 (412)
T ss_dssp HHHHHHHHHT----------SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc--------chHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 888888877641 3444555555555555554444555 899999999999999885 677889999999999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHhheecccCCC
Q 009617 482 LSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKG 517 (531)
Q Consensus 482 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (531)
|.++|+.|++.+|++++++.++..++..+.+++.++
T Consensus 370 G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 370 GYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 999999999999999998888887777776665554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-19 Score=175.12 Aligned_cols=340 Identities=12% Similarity=0.062 Sum_probs=204.1
Q ss_pred HHhhHhHHhhhh-hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhh----hccc-hhhhhhhhHHHHHHHHH
Q 009617 114 ILFGYHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGR-TRTFQLDAVPLAAGAFL 187 (531)
Q Consensus 114 ~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~ 187 (531)
+...+..+...+ ...++.+.+|++...+ |.+..+.-+.-++..+++|.++| |+|| |+.++++.+..+++.++
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l 93 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL 93 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHH
Confidence 333333344333 5567778889999999 99999999999999999999999 6698 55666788887777665
Q ss_pred HHHhch------HHHHHHHHHHHHhhhhhccchhhhhhhhcC-CccccchhHHHHHHHHHHHHHHHHHhhcc----cC--
Q 009617 188 CATAQS------VQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLP----LA-- 254 (531)
Q Consensus 188 ~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~----l~-- 254 (531)
+...++ +..+++..++.+++.....+...+++.|.. +++||.+..++-..+.++|..+.+.+... +.
T Consensus 94 lf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~ 173 (473)
T PRK10429 94 LFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGG 173 (473)
T ss_pred HHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 544332 345666677788888888888999999998 57899998888666666665444433322 11
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhh
Q 009617 255 GNPLWWRTMFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFD 333 (531)
Q Consensus 255 ~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (531)
+...+|+....+.+++.++..+.. +..+|.++.. +.+.+ ++++.+.+..++.
T Consensus 174 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~--~~~~~-------------------------~~~~~~~~~~~~~ 226 (473)
T PRK10429 174 DRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSD--NQVSA-------------------------EGSHLTLKDIVAL 226 (473)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcc--ccccc-------------------------cccCCCHHHHHHH
Confidence 122468888877777765544433 3355543200 00000 0000111223344
Q ss_pred hhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-C-------------CChhhHHHHHHHHhhhcCccHHHHHH
Q 009617 334 LFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV-G-------------IESDVAASALVGAANVFGRKNLLTFS 399 (531)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-------------~~~~~~~~~~~~~~~~~gr~~~~~~~ 399 (531)
+++++.++.+....++.... ......+.+++.+.. + +.........+.+.||+|+|+.+..+
T Consensus 227 ~~~n~~~~~ll~~~~~~~~~----~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~ 302 (473)
T PRK10429 227 IYKNDQLSCLLGMALAYNIA----SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGA 302 (473)
T ss_pred HhcCHHHHHHHHHHHHHHHH----HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 55666555544443333322 112222222222111 1 11112233344568999999998887
Q ss_pred hHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccC-------hhhhhHHHHHHHHHHHH
Q 009617 400 FTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWI 472 (531)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~ 472 (531)
.++..++.+.+...... ...+.+..++...+.+.+.+. ..+...++++|..+ .+..|..+|....+..+
T Consensus 303 ~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~ 378 (473)
T PRK10429 303 SIFPVLSCGVLLLMGLA---APHNALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG 378 (473)
T ss_pred HHHHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence 77666555544332111 111223333333333333332 33455557778754 45567789999999999
Q ss_pred HHHHHHHhhHHHHHhhcc
Q 009617 473 SNFVIGLYFLSVVNKFGI 490 (531)
Q Consensus 473 g~~i~~~~~g~~~~~~g~ 490 (531)
+..+++.+.|.+.+..||
T Consensus 379 ~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 379 GSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999988776
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-18 Score=166.73 Aligned_cols=328 Identities=19% Similarity=0.171 Sum_probs=232.9
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhh----hccchhhh-hhhhHHHHHHHHHHHHh-c------
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTF-QLDAVPLAAGAFLCATA-Q------ 192 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~-~~~~~~~~~~~~~~~~~-~------ 192 (531)
...+++.+.+|++.... |++..+..+-.++..|+.|.++| |+||||.+ +++.++.+++.+++... +
T Consensus 23 ~~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 46778888899999988 99999999999999999999999 89977665 56778888887777766 4
Q ss_pred -hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCc-cccchhHHHHHHHHHHHHHHHHHhhcccCC----CC--chhHHHH
Q 009617 193 -SVQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLPLAG----NP--LWWRTMF 264 (531)
Q Consensus 193 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~~--~gwr~~f 264 (531)
....+.+..++..++.........++..|..++ +||.+..+.-..+..+|.++...+...+.+ .. .+|++..
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 233467777778999999999999999999984 789999999888888888655555555442 11 2799999
Q ss_pred HHhHHHHHHHHHHhcc-cccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHH
Q 009617 265 GLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVV 343 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (531)
++.+++.++..+..++ .+|.++ +.+ +++++.+-+..+++++++|.+..+
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~------~~~------------------------~~~~~~~~~~~~~~~~~nr~~~~l 230 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSV------EVT------------------------EQEKKISLRDSLRSLFRNRPFRIL 230 (428)
T ss_pred HHHHHHHHHHhhhhhheeeeccc------ccc------------------------ccccccccccchhhhcccchHHHH
Confidence 9999888766555444 566111 000 001112234557788888888777
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh----------hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHH
Q 009617 344 SVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD----------VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLS 413 (531)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~ 413 (531)
.....+..+..........+|..+..+..+.... ....+...++||+|+|+....+.++.+++.+++.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 7766665554444444555555555443322111 333444557999999999999999988888877664
Q ss_pred hhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 414 FTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
.. .+.+..++...+.+.+.+ ......+++.+|+.+ ++..|..+|+.+....++..+++.+.+.+.+
T Consensus 311 ~~------~~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 311 GP------GSPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred Hh------hhHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 21 234444444555555544 344667778888876 3456999999999999999999999999998
Q ss_pred hhccc
Q 009617 487 KFGIS 491 (531)
Q Consensus 487 ~~g~~ 491 (531)
..|+.
T Consensus 384 ~~Gy~ 388 (428)
T PF13347_consen 384 LVGYD 388 (428)
T ss_pred HhCcC
Confidence 87754
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-16 Score=152.85 Aligned_cols=340 Identities=16% Similarity=0.099 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhccchhhhh-hhhHHHHHHHHHHHHh-c-hHHHHHHHHHHHHhhhhhccchhhhhh
Q 009617 143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCATA-Q-SVQTMIIGRVLAGIGIGISSAIVPLYI 219 (531)
Q Consensus 143 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~~i 219 (531)
.++..++..+..++..|+.|.++|+-|+||.++ +..++..+++.+..+. + +++...+.-++.-++.+...+...+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477888999999999999999999998776665 4455555566666664 3 344444555666677777888889999
Q ss_pred hhcCCcccc--------------------------chhHHHHHHHHHHHHHHHHHhhcccCCC-------CchhHHHHHH
Q 009617 220 SEISPTEIR--------------------------GALGSVNQLFICVGILAALVAGLPLAGN-------PLWWRTMFGL 266 (531)
Q Consensus 220 ~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~gwr~~f~~ 266 (531)
.|..+++++ ++..+.-.+.+.+|.++.-++.-.+... ...-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999888 8888888888888877666654443211 2346888888
Q ss_pred hHHHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHH
Q 009617 267 AAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (531)
Q Consensus 267 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (531)
.++.-++..+ .++++||.|+....+..........+++ ...++++.+.+.....++
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l-----------------------~~t~k~~~~~~~~~~fLi 288 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL-----------------------WRTFKEIRKLRQLFLFLI 288 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH-----------------------HHHHHHHHhChHHHHHHH
Confidence 8887765554 4455777764211111111111111211 122334444444444444
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHH-HHHcCCChh--------------hHHHHHHHHhhhcCcc--HHHHHHhHHHHHHHH
Q 009617 346 GAALFLFQQLAGINAVVYYSTSV-FRSVGIESD--------------VAASALVGAANVFGRK--NLLTFSFTGMAASML 408 (531)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~--------------~~~~~~~~~~~~~gr~--~~~~~~~~~~~~~~~ 408 (531)
+.+++. -+...+......+ .+..|++.. ..+.+.+.+.||+|.| +++..+.++..+..+
T Consensus 289 a~~l~~----dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 289 AYFLYS----DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 433322 2233444433333 346777765 3344445568999988 676665554422222
Q ss_pred HHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 009617 409 LLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF 488 (531)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~ 488 (531)
.-.+..........+.+...+..++.+.+ ..+..+..-++.+++.|+++.+..+|++...+...+++||.+.|.+.+..
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~-~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLF-MGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHhhhcccCcccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21111111111122333333333333333 34566777789999999999999999999999999999999999999998
Q ss_pred c-cchhhHHHHHHHHHHHHHhhe
Q 009617 489 G-ISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 489 g-~~~~~~~~~~~~~~~~~~~~~ 510 (531)
| .+..+..+.++.+++.++.+.
T Consensus 444 g~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 444 GSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred CCchhHHHHHHHHHHHHHHHHhh
Confidence 8 777888887777777776644
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=150.51 Aligned_cols=385 Identities=18% Similarity=0.128 Sum_probs=236.1
Q ss_pred hhHHHHHHhcC----CCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-cchhhhhhhhHHHHHHHHHHHHhc--hHHHH
Q 009617 125 GALEYLAKDLG----IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ--SVQTM 197 (531)
Q Consensus 125 ~~~~~i~~~~~----~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l 197 (531)
++.-++..+++ .++++. .-+.+.|..-.-+..+++|+++||+ |+|+.+.+|.+++.+|.++.+.+. +...+
T Consensus 43 iL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl 120 (498)
T COG3104 43 ILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGL 120 (498)
T ss_pred HHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHH
Confidence 35667777777 998888 7788888887788999999999996 999999999999999999999884 78899
Q ss_pred HHHHHHHHhhhhhccchhhhhhhhcCCcc--ccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHH
Q 009617 198 IIGRVLAGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (531)
Q Consensus 198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~ 275 (531)
+++-.+.++|.|..-+....+++|.+|++ +|-..+++++++.++|.+++|++.+.+.+. .||...|...++-..+.+
T Consensus 121 ~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~-~g~~~gF~~aavGm~~gl 199 (498)
T COG3104 121 YIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN-YGWHVGFGLAAVGMIIGL 199 (498)
T ss_pred HHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874 368889999999999999999999999865 899999988887776655
Q ss_pred HHhcccccc---------hhHHHHhCChHHHHHH----HHH----HhCccchHHHHH------HHHHhccCCCCCccchh
Q 009617 276 LGMGLSPES---------PRWLFQQGKKSEAEKS----IQT----LYGKERVSEVML------DLTNAGQGSAEPEAGWF 332 (531)
Q Consensus 276 ~~~~~~~e~---------~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 332 (531)
+.+++.+.. +..+..+......... ... ....+....... ...--.+....++.. .
T Consensus 200 ~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~ 278 (498)
T COG3104 200 VIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-D 278 (498)
T ss_pred HHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-H
Confidence 555443321 1111000000000000 000 000000000000 000000000001100 1
Q ss_pred hhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc--C--CChh-------hH----HHHHHHHhhhcCcc----
Q 009617 333 DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV--G--IESD-------VA----ASALVGAANVFGRK---- 393 (531)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g--~~~~-------~~----~~~~~~~~~~~gr~---- 393 (531)
+.-|-.....+.+...+++..+....+.+..|.....+.. | +.+. .. +.++..+..+.+++
T Consensus 279 er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~p 358 (498)
T COG3104 279 ERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQP 358 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCC
Confidence 1111111122222223333333333444444444433222 2 2222 11 22222233342222
Q ss_pred ---HHHHHHhHHHHHHHHHHHHHhhcccc-cCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHH
Q 009617 394 ---NLLTFSFTGMAASMLLLSLSFTWKVL-APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM 469 (531)
Q Consensus 394 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 469 (531)
.-..++..+++.+++++.....+... ......++++...++.....+...|+..+++....|+...+..+++....
T Consensus 359 s~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt 438 (498)
T COG3104 359 STPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438 (498)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 22456677777777777666333332 22234444444455555556778888888999999999999999999988
Q ss_pred HHHHHHHHHHhhHH------HHHhhccchhhHHHHHHHHHHHHHhheecc
Q 009617 470 HWISNFVIGLYFLS------VVNKFGISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 470 ~~~g~~i~~~~~g~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
...+..++..+.+. ..+.......|..++.+.++..+......|
T Consensus 439 ~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 439 VAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 88888888877763 334455566777777776666665544333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=157.38 Aligned_cols=323 Identities=13% Similarity=0.121 Sum_probs=198.6
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh----ccchhhh-hhhhHHHHHHHHHHHHhch------H
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTRTF-QLDAVPLAAGAFLCATAQS------V 194 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~-~~~~~~~~~~~~~~~~~~~------~ 194 (531)
+..++.+.+|++...+ |.+..+.-+--++..|+.|.++|| +||||.. +++.+..+++.+++-..++ +
T Consensus 32 l~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~ 109 (460)
T PRK11462 32 MMFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM 109 (460)
T ss_pred HHHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 5667788899999888 999999999999999999999995 7986555 5676778877766655543 3
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhcccCC------CCchhHHHHHHh
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAG------NPLWWRTMFGLA 267 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~gwr~~f~~~ 267 (531)
..+++.-++..++......+-.++.+|..+ ++||++..++-..+..+|..+++.+...+.. ...+|+....+.
T Consensus 110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~ 189 (460)
T PRK11462 110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL 189 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 456667777888888888888899999987 6889999999999988887776665433221 124688888777
Q ss_pred HHHHHHHHHHhcc-cccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHH
Q 009617 268 AIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG 346 (531)
Q Consensus 268 ~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (531)
+++.++..+..++ .+|.++. +.++ .+.+..++.+++++.++.+...
T Consensus 190 ~ii~~i~~~i~~~~~kE~~~~---~~~~------------------------------~~~~~~l~~~~~Nk~~~~l~~~ 236 (460)
T PRK11462 190 SVVAFMMLAFCFFTTKERVEA---PPTT------------------------------TSMREDLRDIWQNDQWRIVGLL 236 (460)
T ss_pred HHHHHHHHHHHHhcceeccCC---CccC------------------------------CCHHHHHHHHhCChHHHHHHHH
Confidence 7776555443333 3443210 0000 0011234456667766665544
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHcCC----------ChhhHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhc
Q 009617 347 AALFLFQQLAGINAVVYYSTSVFRSVGI----------ESDVAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTW 416 (531)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 416 (531)
.++.............+|..+..+.... .......+...++||+++|+....+..+..+..+++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--- 313 (460)
T PRK11462 237 TIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--- 313 (460)
T ss_pred HHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---
Confidence 4444333332233444444444321111 011122233456899999888765544333333322221
Q ss_pred ccccCcchhHHHHHHHHHHHHHhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 009617 417 KVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG 489 (531)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 489 (531)
+.......++..++.+.+. ....+..+++..|..+ .+..|...+....+..+|.++++.+.|.+.+..|
T Consensus 314 ---~~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 314 ---PMQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred ---chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1111112222223333332 2234444556666655 3344565677778999999999999999998777
Q ss_pred c
Q 009617 490 I 490 (531)
Q Consensus 490 ~ 490 (531)
+
T Consensus 390 y 390 (460)
T PRK11462 390 Y 390 (460)
T ss_pred C
Confidence 6
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-16 Score=154.64 Aligned_cols=319 Identities=15% Similarity=0.108 Sum_probs=187.9
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc----cchhhh-hhhhHHHHHHHHHHHHhc-------h
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF----GRTRTF-QLDAVPLAAGAFLCATAQ-------S 193 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~~~~-------~ 193 (531)
..+++.+.+|++..++ |.+.++..+..++..+++|+++||. |||+.+ ..+.+...+..++....+ .
T Consensus 31 l~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (448)
T PRK09848 31 LLSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK 108 (448)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence 4567888899999999 9999999999999999999999996 777655 555555554444432111 1
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhhhcCCc-cccchhHHHHHHH-----HHHHHHHHHHhhcccCCC-CchhHHHHHH
Q 009617 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLF-----ICVGILAALVAGLPLAGN-PLWWRTMFGL 266 (531)
Q Consensus 194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~g~~~~~~l~~~-~~gwr~~f~~ 266 (531)
...+++..++.+++.+...+...++..+...+ ++|.+..++-..+ ..+|..++|+++...... ..+|.....+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~ 188 (448)
T PRK09848 109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIV 188 (448)
T ss_pred HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 23345556778888888888777877777655 6787776655433 345566777776554321 1123222223
Q ss_pred hHHHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHH
Q 009617 267 AAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (531)
Q Consensus 267 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (531)
.++++++..+ .....+|+++. +.++ ...+..++.+++++.+....+
T Consensus 189 ~~v~~~~~~~~~~~~~~e~~~~---~~~~------------------------------~~~~~~~~~l~~n~~f~~~~~ 235 (448)
T PRK09848 189 LAIAGMVLYFICFKSTRENVVR---IVAQ------------------------------PSLKISLQTLKRNRPLFMLCI 235 (448)
T ss_pred HHHHHHHHHHHHHcCcEeccCC---CccC------------------------------CCHHHHHHHHhCCchHHHHHH
Confidence 3333332222 22334554220 0000 011223556777777766555
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhh--------------HHHHHHHHhhhcCccHHHHHHhHHHHHHHHHH
Q 009617 346 GAALFLFQQLAGINAVVYYSTSVFRS-VGIESDV--------------AASALVGAANVFGRKNLLTFSFTGMAASMLLL 410 (531)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--------------~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~ 410 (531)
..++..... .......+++.+. .|.+... .......+.||+|+|+.+..+.++.+++.+++
T Consensus 236 ~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~ 311 (448)
T PRK09848 236 GALCVLIST----FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLF 311 (448)
T ss_pred HHHHHHHHH----HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 444433322 2222233333221 2322221 12222335899999999998888877776665
Q ss_pred HHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChh-------hhhHHHHHHHHHHHHHHHHHHHhhHH
Q 009617 411 SLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR-------IRAKAVALSLGMHWISNFVIGLYFLS 483 (531)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~i~~~~~g~ 483 (531)
.+. ...+.+.......+.+.+.+. ..+...++..|..|.+ .+|...|+.+....+|..+++.+.+.
T Consensus 312 ~~~------~~~~~~~~~~~~~l~g~G~~~-~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 312 FWV------SVWSLPVALVALAIASIGQGV-TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHc------CchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 111222233333344444433 2344555777776543 46999999999999999999999999
Q ss_pred HHHhhcc
Q 009617 484 VVNKFGI 490 (531)
Q Consensus 484 ~~~~~g~ 490 (531)
+.+..||
T Consensus 385 ~l~~~G~ 391 (448)
T PRK09848 385 ILGLSGY 391 (448)
T ss_pred HHHHcCC
Confidence 9887775
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-15 Score=143.85 Aligned_cols=328 Identities=18% Similarity=0.160 Sum_probs=222.9
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh----ccchh-hhhhhhHHHHHHHHHHHHhch------H
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTR-TFQLDAVPLAAGAFLCATAQS------V 194 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~ 194 (531)
++-+..+.+|++...+ |.+..+--+--++..|+.|.+.|| +|||| .++.+.+..++.++++-.+++ .
T Consensus 35 Ll~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~ 112 (467)
T COG2211 35 LLFFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL 112 (467)
T ss_pred HHHHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence 5556788899999888 999988888899999999999995 88754 556777888888888887774 4
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhc----ccCCC--CchhHHHHHHh
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGL----PLAGN--PLWWRTMFGLA 267 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~----~l~~~--~~gwr~~f~~~ 267 (531)
...++...+.+++......+-.++.+|+.+ ++||.+..++-+.+.++|.++...+.. .+.+. ..||+..-++.
T Consensus 113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~ 192 (467)
T COG2211 113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVL 192 (467)
T ss_pred HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence 456777899999999999999999999986 478999999988888888544433332 22222 45899888888
Q ss_pred HHHHHHHHHHhcc-cccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHH
Q 009617 268 AIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG 346 (531)
Q Consensus 268 ~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (531)
++++++..+..++ .+|.+... .+.+. ..+.+.+.++..+++++.+....+.
T Consensus 193 ~vi~~i~~l~~~~~v~ER~~~~-~~~~~---------------------------~~~~~~~~~~~~~~~Nrp~~~~l~~ 244 (467)
T COG2211 193 GVIGVILLLFCFFNVKERVVET-QPTKT---------------------------GVKLKLKDSFLLIFKNRPLLLLLLM 244 (467)
T ss_pred HHHHHHHHHHHHHHhhcccCcc-ccCcc---------------------------cccccHHHHHHHHHccchHHHHHHH
Confidence 8888776665544 34433200 00000 0011112234467788877777665
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHcCCCh-----------hhHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhh
Q 009617 347 AALFLFQQLAGINAVVYYSTSVFRSVGIES-----------DVAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFT 415 (531)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----------~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~ 415 (531)
..+.............||..+.++...... .........+.+|+|+|++..++.++.+++.+++.+..
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~- 323 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP- 323 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-
Confidence 544444333333344444333322211111 11234444568999999999999999999888887642
Q ss_pred cccccCcchhHHHHHHHHHHHHHhcCcccccccccccccC-------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 009617 416 WKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFA-------SRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF 488 (531)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~ 488 (531)
..+....++..++...+.+ ...++.+++++|..+ .+..|...|.+..+.-+|.+++..+.|++.+..
T Consensus 324 -----~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 324 -----AGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred -----CcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2223333333344444443 456788888888763 456788899999999999999999999999887
Q ss_pred cc
Q 009617 489 GI 490 (531)
Q Consensus 489 g~ 490 (531)
||
T Consensus 398 Gy 399 (467)
T COG2211 398 GY 399 (467)
T ss_pred CC
Confidence 75
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=158.88 Aligned_cols=381 Identities=16% Similarity=0.156 Sum_probs=223.5
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhh-HHHHHH-hcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccc-hhhhhhhhH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGA-LEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAV 179 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~-~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~ 179 (531)
|..+.++.+..++.....+++.+. .|++++ |.+.+.+.. |++.++..++.+++++.+|+...|.|. |+.++.|.+
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ff--G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i 110 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFF--GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL 110 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchh--hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence 445556666677777777776654 465544 466666666 999999999999999999999999997 999999999
Q ss_pred HHHHHHHHH-HHh---c-hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 180 PLAAGAFLC-ATA---Q-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 180 ~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
+..+++++. ++. + ..+.++++|++.|+|.| .....-+|+++....++|.++++....+..+|.++||.++.++.
T Consensus 111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 999999888 332 3 57789999999999977 56778899999999999999999999988888888888876654
Q ss_pred CCC-ch-----------hHHHHHHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhc
Q 009617 255 GNP-LW-----------WRTMFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG 321 (531)
Q Consensus 255 ~~~-~g-----------wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (531)
.-. .| +-.+-|+.+++.++.++.. +++.|.++....++.+.+ ++.+.+.
T Consensus 190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~------------------~~~~~~~ 251 (488)
T KOG2325|consen 190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV------------------EEEKSDI 251 (488)
T ss_pred hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc------------------hhhccch
Confidence 210 11 3345567777776655444 446666542111110000 0000000
Q ss_pred cCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhH-----------HHHHHHH----
Q 009617 322 QGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA-----------ASALVGA---- 386 (531)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------~~~~~~~---- 386 (531)
++.+. .+..+...++++...+...+.....-..+.+.....++...... +.+...+
T Consensus 252 ~~~~~---------~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~ 322 (488)
T KOG2325|consen 252 EKVKK---------PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLY 322 (488)
T ss_pred hhhcc---------CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHH
Confidence 00000 01233344444444444333333323333444444444433311 1111111
Q ss_pred ----hhhcCccHHHHHHhHHHHHHHHHHHHHh--hcccccC--------------------cchhHHHHHHHHHHHHHhc
Q 009617 387 ----ANVFGRKNLLTFSFTGMAASMLLLSLSF--TWKVLAP--------------------YSGTLAVLGTVLYVLSFSL 440 (531)
Q Consensus 387 ----~~~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 440 (531)
..++.+|..+..+.+.......+..... ...+... ..+...++......++.+.
T Consensus 323 ~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~ 402 (488)
T KOG2325|consen 323 IFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAF 402 (488)
T ss_pred HHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheecccc
Confidence 1232334444433222222222221111 0000000 0011111111111111111
Q ss_pred C-cccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecc
Q 009617 441 G-AGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 441 ~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
- ......+.-+|..+++.++++.|++...+..+..++|.+...+....|++..+.+..+..++...+...+.+
T Consensus 403 P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~ 476 (488)
T KOG2325|consen 403 PFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLK 476 (488)
T ss_pred ccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122233466788899999999999999999999999999999999999888777766665555554443333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=163.49 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=136.0
Q ss_pred hHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHH---HHHhchHHHHHHHH
Q 009617 126 ALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIGR 201 (531)
Q Consensus 126 ~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r 201 (531)
.+| ++++++|.+..+. ++..+...++..++.+++|+++||+|||+++..+.++..++.+. ...+++...+++++
T Consensus 272 ~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
T PRK10642 272 YMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL 349 (490)
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 444 4557789888777 78888889999999999999999999999988877654443322 22345677788899
Q ss_pred HHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhccc
Q 009617 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (531)
Q Consensus 202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 281 (531)
++.|++.+........++.|.+|++.|++++++......++..++|.+.+.+.+...+|+..+++..+.+++..+..+++
T Consensus 350 ~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 350 LMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99998877777777888999999999999999754445555677787777766443457877777777777666666778
Q ss_pred ccchhHHHHh-----CChHHHHHHHHHHh
Q 009617 282 PESPRWLFQQ-----GKKSEAEKSIQTLY 305 (531)
Q Consensus 282 ~e~~~~~~~~-----~~~~~~~~~~~~~~ 305 (531)
||+|+++.++ ++.+++.+.+++++
T Consensus 430 pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 430 KETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred ccccCCCCCCccccccchhhHHHHhhccc
Confidence 9999987654 77788888887776
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=142.87 Aligned_cols=262 Identities=15% Similarity=0.094 Sum_probs=166.6
Q ss_pred HHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC-----------
Q 009617 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP----------- 257 (531)
Q Consensus 189 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----------- 257 (531)
+...+|+.++++-++.|.|.+...+....++++..+++++++.+++.+..+++|..++|++++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 456789999999999999999999999999999999999999999999999999999999999766211
Q ss_pred ----chhHHHHHHhHHHHHHHHHHhcc--cccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccch
Q 009617 258 ----LWWRTMFGLAAIPSILLALGMGL--SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW 331 (531)
Q Consensus 258 ----~gwr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (531)
.+|+++|++.+.+.++..+.+.+ +||.+. +++ ++.. . ++....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~~~-~~~~----------------------~----~~~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----ADV-ARVS----------------------S----GDTTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----ccc-cccc----------------------c----ccccch
Confidence 37999999777766554444433 344321 000 0000 0 000011
Q ss_pred hhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH---cCCChhhHHHH--------------HHHHhhhcCccH
Q 009617 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS---VGIESDVAASA--------------LVGAANVFGRKN 394 (531)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~--------------~~~~~~~~gr~~ 394 (531)
+..++++..+...+..+++. ........|.+.++.+ .|++....+.. ...+.||+++++
T Consensus 134 ~~~~~~~~~~l~~~~~f~yv----g~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSAFQFTHLVLGALGIFVYV----GAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 12333333333333333332 2234445555555543 36665432222 223589999998
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHH
Q 009617 395 LLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISN 474 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 474 (531)
.+..+.++..++.+++... +.........+++.+.+ ...|...+...+..|+ ..+++.++. .++.+|+
T Consensus 210 ~l~~~~~l~~~~~~l~~~~---------~~~~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg 277 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT---------HGYVAMWFVLALGLFNS-IMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGG 277 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcc
Confidence 8887777666665444321 11222233333443333 3455655577777774 456677775 5688999
Q ss_pred HHHHHhhHHHHHhhccchhhHHH
Q 009617 475 FVIGLYFLSVVNKFGISTVYLGF 497 (531)
Q Consensus 475 ~i~~~~~g~~~~~~g~~~~~~~~ 497 (531)
++.|++.|.+.|..|.+..+++.
T Consensus 278 ~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 278 AIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred hHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999998987777643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-14 Score=130.17 Aligned_cols=340 Identities=15% Similarity=0.113 Sum_probs=211.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhh-hhhHHHHHHHHHHHHhch--HH-HHHHHHHHHHhhhhhccchh
Q 009617 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCATAQS--VQ-TMIIGRVLAGIGIGISSAIV 215 (531)
Q Consensus 140 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~~~~~ 215 (531)
+...+...++..+..++.+++.|.++|+.|+||... +...+..++..+..++++ ++ ..++...+..++.....+.-
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 345588899999999999999999999999776655 555555566666666655 44 44555678888888888899
Q ss_pred hhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhh--cccCC---------------CCchhHHHHHHhHHHHHHHHHHh
Q 009617 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LPLAG---------------NPLWWRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 216 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l~~---------------~~~gwr~~f~~~~~~~~~~~~~~ 278 (531)
.+++.+..++++-++..++-.....+|..+.-++. .++.. ....=|..+.+.++.-++..+..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 99999999998777776665555555544433332 11111 22457888888888887766655
Q ss_pred cc-cccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhh
Q 009617 279 GL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAG 357 (531)
Q Consensus 279 ~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (531)
++ .++.++-. ...........+++ +.+++++.+.+....++++.+++.- +
T Consensus 217 ~~~v~~~~~~~--~~~~~~l~~g~k~L-----------------------~~t~k~i~~~~~i~~FLiA~~~~~D----G 267 (438)
T COG2270 217 ILNVHDAEKIS--SPPPTALRNGFKEL-----------------------KSTFKEIRGRKNLVLFLIARFFYID----G 267 (438)
T ss_pred Hhccccccccc--ccchHHHHHHHHHH-----------------------HHHHHHHhcccchHHHHHHHHHHHh----h
Confidence 44 45544310 00111111111111 2344555555555555554433322 2
Q ss_pred HHHHHHhHHHHHH-HcCCChh--------------hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCc
Q 009617 358 INAVVYYSTSVFR-SVGIESD--------------VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 422 (531)
Q Consensus 358 ~~~~~~~~~~~~~-~~g~~~~--------------~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (531)
.+.+......+-. +.|++.. ..+.+.+.+.+|+|.|+++..+.++..+..+...+..
T Consensus 268 v~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~-------- 339 (438)
T COG2270 268 VNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE-------- 339 (438)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc--------
Confidence 3333333333333 5666654 3344455678999999888888776666555544421
Q ss_pred chhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhHHHHHHH
Q 009617 423 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVC 501 (531)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~ 501 (531)
.....++..++++.. ..+.....-+|..+++|+++.+..+|+++..+...++.+|...+.+.+.+| .+..+..+.++.
T Consensus 340 ~~~~f~i~gll~g~s-~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll 418 (438)
T COG2270 340 GELDFWILGLLVGTS-LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLL 418 (438)
T ss_pred ccHHHHHHHHHHHHh-cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 112222222333333 334566777799999999999999999999999999999999999998877 344455555555
Q ss_pred HHHHHHhheecccCCCC
Q 009617 502 LLAVLYIAVNVVETKGR 518 (531)
Q Consensus 502 ~~~~~~~~~~~~~~~~~ 518 (531)
.++.++. ...|..+++
T Consensus 419 ~iGl~~L-~~v~~~~~~ 434 (438)
T COG2270 419 LIGLLLL-LRVKVPGRR 434 (438)
T ss_pred HhhHhhE-EeecCCCCc
Confidence 5555443 334444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-14 Score=139.63 Aligned_cols=181 Identities=17% Similarity=0.159 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHH
Q 009617 104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183 (531)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 183 (531)
..+.++++..+..++..+.+...+..+.+.|+++.++. |++.+.+-++..+...+..+..-|.-|-+++-+|++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 34556677777888888888889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--------------------c---------------------------h----HH-HHHHHHHHHHhhhhhc
Q 009617 184 GAFLCATA--------------------Q---------------------------S----VQ-TMIIGRVLAGIGIGIS 211 (531)
Q Consensus 184 ~~~~~~~~--------------------~---------------------------~----~~-~l~~~r~l~G~~~~~~ 211 (531)
+++++++- + + ++ .++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 99998762 0 0 22 4677889999999999
Q ss_pred cchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC------------------chhHHHHHHhHHHHHH
Q 009617 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP------------------LWWRTMFGLAAIPSIL 273 (531)
Q Consensus 212 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------------------~gwr~~f~~~~~~~~~ 273 (531)
++.+..|+=|...+++-...+|+......+|.++|.++++++.+-+ .-|..-|++.+.+.++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875310 1277778888888888
Q ss_pred HHHHhcccccchh
Q 009617 274 LALGMGLSPESPR 286 (531)
Q Consensus 274 ~~~~~~~~~e~~~ 286 (531)
..+.++++|.+..
T Consensus 335 ~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 335 SAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHhCcccCc
Confidence 8888888876543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-15 Score=122.52 Aligned_cols=136 Identities=26% Similarity=0.339 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCcc
Q 009617 147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226 (531)
Q Consensus 147 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 226 (531)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+++.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc-ccc
Q 009617 227 IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPE 283 (531)
Q Consensus 227 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e 283 (531)
+|++..++......+|..+++.+++.+.+. .+|++.|++.+++.++..+..++ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999988754 78999999988877665554443 344
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=145.69 Aligned_cols=140 Identities=15% Similarity=0.051 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCC
Q 009617 145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP 224 (531)
Q Consensus 145 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 224 (531)
+...+..++..++.++.|+++||+|||+++++++++++++.++.+++++...+++.+++.|++.++.++...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556678889999999999999999999999999999999999999998888999999999888889999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcccccchh
Q 009617 225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286 (531)
Q Consensus 225 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~ 286 (531)
.++|++++|+..+...+|.++||++++.+.+ .+...+|++.+++.++.+++.+++||+..
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~--~~~~~pf~i~a~~lll~~ll~~~LPET~~ 738 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVG--ITKAAPILFASAALACGGLLALKLPDTRG 738 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999987764 34567788888777777777777788753
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=135.61 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=126.9
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Q 009617 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207 (531)
Q Consensus 128 ~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 207 (531)
.++++++|.+..+. +++.+...++..++.+++|+++||+|||+.+..+.+...+......+.++.+.+++.+++.+++
T Consensus 241 ~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 318 (393)
T PRK15011 241 LFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIY 318 (393)
T ss_pred HHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35677899998888 8888887788888999999999999999988877776666655556677888888899999888
Q ss_pred hhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhccccc
Q 009617 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283 (531)
Q Consensus 208 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 283 (531)
.+...+....+..|.+|+ +|+++.++++....+|..+++.+++.+.+. .||+..|++.+++.++..+..++.||
T Consensus 319 ~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 319 IGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI-WNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 887777777888999986 589999999999999999999999998854 68999999888888777766666654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-12 Score=118.91 Aligned_cols=340 Identities=15% Similarity=0.046 Sum_probs=209.7
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhcc-----chhhhh-hhhHHHHHHHHHHHHh-----c-----
Q 009617 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQ-LDAVPLAAGAFLCATA-----Q----- 192 (531)
Q Consensus 129 ~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~-~~~~~~~~~~~~~~~~-----~----- 192 (531)
-|..|++++..-. +.+.++..+. ....+.+|+.+|+.+ ||..++ .|.++...+..+..++ .
T Consensus 5 VMIvEL~vpA~lv--~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~ 81 (403)
T PF03209_consen 5 VMIVELGVPAWLV--ALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS 81 (403)
T ss_pred hHHHHhccHHHHH--HHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 3667899988777 8888887775 456899999999999 887665 5555555555444432 2
Q ss_pred ---hHH---HHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHH
Q 009617 193 ---SVQ---TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (531)
Q Consensus 193 ---~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~ 266 (531)
.+. ...+...+.|+|.+...+...++++|..++++|+++.++......+|.+++.++.+.+.+....-|..-.+
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI 161 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 222 24445678899999999999999999999999999999999999999999999988877653334443333
Q ss_pred hHH--HHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHH
Q 009617 267 AAI--PSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVS 344 (531)
Q Consensus 267 ~~~--~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (531)
.+. +.+...++..+-.|.+.....+ .+++++......++++..++..+++.
T Consensus 162 ~~~a~i~~~l~~ia~wg~E~r~~~~~~---------------------------~~~~~~~~f~~a~~~~~~~~~a~~f~ 214 (403)
T PF03209_consen 162 QGVALIALLLNLIALWGQEPRRSRRAA---------------------------AAERPRPPFREAWRQVWASPQARRFF 214 (403)
T ss_pred HHHHHHHHHHHHHHHHhcccCCccccc---------------------------CCCCCCccHHHHHHHHHhCCChhHHH
Confidence 333 2222222332223322110000 00011112233455566666666655
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHHHH--------------HH-HhhhcCccHHHHHHhHHHHHHHHH
Q 009617 345 VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASAL--------------VG-AANVFGRKNLLTFSFTGMAASMLL 409 (531)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~-~~~~~gr~~~~~~~~~~~~~~~~~ 409 (531)
+..++..+..+ .--...-||--+.+|++.....-+. +. +..+.++++...++....++++.+
T Consensus 215 ~fl~l~t~a~~---~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 215 VFLFLGTLAFF---MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred HHHHHHHHHHH---hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 55444433211 1122233454556677655221111 11 245677888888888888888777
Q ss_pred HHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh-
Q 009617 410 LSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF- 488 (531)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~- 488 (531)
+.+..... +.+......++++++.+........ ..-+..++++.|+.+|.....+.+...++..++|.+.|..
T Consensus 292 ii~a~~~~-----~~~~~~~~~~l~G~g~G~f~vgals-~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 292 IILAGPLG-----SPWLFRPGVFLLGLGNGLFTVGALS-LMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred HHHHHhcc-----cchHHHHHHHHHHHhhhHHHHHHHH-HHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76653221 2344444555555554443333333 4456777788999999999999999999999999888742
Q ss_pred ---------ccchhhHHHHHHHHHHHHH
Q 009617 489 ---------GISTVYLGFATVCLLAVLY 507 (531)
Q Consensus 489 ---------g~~~~~~~~~~~~~~~~~~ 507 (531)
+|..+|.+=++..+++..+
T Consensus 366 ~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 366 ALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 2444555544444444443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=141.62 Aligned_cols=148 Identities=12% Similarity=0.031 Sum_probs=125.5
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccc
Q 009617 134 LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSA 213 (531)
Q Consensus 134 ~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 213 (531)
.+.+..+. |++.++..++..++.+++|+++||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+
T Consensus 257 ~~~~~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~ 334 (420)
T PRK09528 257 PEQGTRVF--GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV 334 (420)
T ss_pred cCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 35666667 9999999999999999999999999999999999999999989999999999999999999999888778
Q ss_pred hhhhhhhhcCCccccchhHHH-HHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc-ccccc
Q 009617 214 IVPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-LSPES 284 (531)
Q Consensus 214 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~e~ 284 (531)
....++.|.+|++.|+...+. ++....+|.++++.+.|.+.+. .||+..|++.+++.++..+..+ .++++
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-IGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888899999999988877655 6677889999999999999865 6899999998887765444433 34443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=139.55 Aligned_cols=158 Identities=14% Similarity=0.097 Sum_probs=127.8
Q ss_pred hHHHHHHhcCCCc--------chhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhc----h
Q 009617 126 ALEYLAKDLGIAE--------NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ----S 193 (531)
Q Consensus 126 ~~~~i~~~~~~s~--------~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~ 193 (531)
..+...++.|.+. +.. +...++..++..++.++.|+++||+|+|+++..+.++.+++..+..... +
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~--g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~ 307 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNA--SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG 307 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence 3344445666443 455 8899999999999999999999999999999999999988877666632 2
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHH-HHHHHHHHHHHHhhcccCCCC-----chhHHHHHHh
Q 009617 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNP-----LWWRTMFGLA 267 (531)
Q Consensus 194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~-----~gwr~~f~~~ 267 (531)
++.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ....+|.++||+++|.+.+.. .||+..|++.
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~ 387 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFF 387 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence 4567788999999999888888999999999999999999997 678899999999999887542 4699999998
Q ss_pred HHHHHHHHHHh-cccccch
Q 009617 268 AIPSILLALGM-GLSPESP 285 (531)
Q Consensus 268 ~~~~~~~~~~~-~~~~e~~ 285 (531)
+++.++..++. ++++|+.
T Consensus 388 ~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 388 AGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 88876555444 4456653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=136.31 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=130.7
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
..|.+.++.|.+..+. +++.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+.-++.|
T Consensus 242 ~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (406)
T PRK11551 242 WLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4567777889999888 99999999999999999999999999999998887777777777777888888888888899
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhccc
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 281 (531)
++.+...+...+++.|.+|+++|++++++.+....+|..+||.+++.+.+...+|...++......++..+..+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9888788888999999999999999999999999999999999999988654567777776666665555544443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.5e-16 Score=153.67 Aligned_cols=372 Identities=14% Similarity=0.120 Sum_probs=3.0
Q ss_pred HHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHH
Q 009617 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (531)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 187 (531)
.+++..+...+..+.....+..+++.|+++..+. |++.+.+-++..+..++..++.+|..|-|++.+|.+++++++++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l 84 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL 84 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence 3344455556667777788999999999999999 99999999999999999999999988888999999999999988
Q ss_pred HHHh----c----------------------------------------------hHHHHHHHHHHHHhhhhhccchhhh
Q 009617 188 CATA----Q----------------------------------------------SVQTMIIGRVLAGIGIGISSAIVPL 217 (531)
Q Consensus 188 ~~~~----~----------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~ 217 (531)
+++= . -+..++++.++.|+|....++.+.+
T Consensus 85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t 164 (539)
T PF03137_consen 85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT 164 (539)
T ss_dssp -------------------------------------------------------------------SSS----------
T ss_pred HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence 7651 0 1234788899999999999999999
Q ss_pred hhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC--------------------c-hhHHHHHHhHHHHHHHHH
Q 009617 218 YISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP--------------------L-WWRTMFGLAAIPSILLAL 276 (531)
Q Consensus 218 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--------------------~-gwr~~f~~~~~~~~~~~~ 276 (531)
|+=|..++++-+..+|++.+...+|.++|.++++.+...+ . .|..-|++.+++.++..+
T Consensus 165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai 244 (539)
T PF03137_consen 165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI 244 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998775310 1 266667777777776666
Q ss_pred HhcccccchhHHHHhCChHHHHHHHHHHhCccchHH-HHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHh
Q 009617 277 GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSE-VMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 355 (531)
Q Consensus 277 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (531)
.++++|+.-+... +..++.+...++..+.+..+. +..+.+...+..+.-....+.+++++.+....++......
T Consensus 245 pl~~FPk~lp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~--- 319 (539)
T PF03137_consen 245 PLFFFPKKLPGTS--ERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF--- 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCccCCCcc--cccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH---
Confidence 6666665432110 000000000000000000000 0000000011122334456667777665555444333332
Q ss_pred hhHHHHHHhHHHHH-HHcCCChhhHHHHHHH---------------HhhhcC--ccHHHHHHhHHHHHHHHHHHHH----
Q 009617 356 AGINAVVYYSTSVF-RSVGIESDVAASALVG---------------AANVFG--RKNLLTFSFTGMAASMLLLSLS---- 413 (531)
Q Consensus 356 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~---------------~~~~~g--r~~~~~~~~~~~~~~~~~~~~~---- 413 (531)
....+..|.|.++ .+++.+...+..+.+. +.+|++ .|..+....+...++.+++...
T Consensus 320 -~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~ 398 (539)
T PF03137_consen 320 -IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLG 398 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence 2445555555554 4566666543333322 345542 3444444433333333321110
Q ss_pred ----------hhcc------c-c----------------------cCc---chhHHHHHHHHHHHHHhcCcccccccccc
Q 009617 414 ----------FTWK------V-L----------------------APY---SGTLAVLGTVLYVLSFSLGAGPVPALLLP 451 (531)
Q Consensus 414 ----------~~~~------~-~----------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (531)
..+. . . ... .....++..++..+.......|... ..-
T Consensus 399 C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~-i~L 477 (539)
T PF03137_consen 399 CPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTL-ITL 477 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhe-eee
Confidence 0000 0 0 000 0111222222222333334445554 556
Q ss_pred cccChhhhhHHHHHHHHHHH-HHHHHHHHhhHHHHHhh
Q 009617 452 EIFASRIRAKAVALSLGMHW-ISNFVIGLYFLSVVNKF 488 (531)
Q Consensus 452 ~~~p~~~~~~~~g~~~~~~~-~g~~i~~~~~g~~~~~~ 488 (531)
.++|+++|+.|.|+...+.. +|.+-+|+++|.++|..
T Consensus 478 R~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 478 RCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp --------------------------------------
T ss_pred ccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 88899999999999987765 56677999999999874
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=133.19 Aligned_cols=146 Identities=15% Similarity=0.041 Sum_probs=125.6
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchH--HHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVL 203 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l 203 (531)
..+.+.+++|.++.+. +++.+.+.++..+++++.|+++||+|||+.+.++.++.+++.++..+.++. ..+++..++
T Consensus 227 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 4455567899888888 999999999999999999999999999999999999998888887777643 334566788
Q ss_pred HHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHH
Q 009617 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL 274 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~ 274 (531)
.|++.+...+....++.|.+|+++|+++.|+......+|..++|.+.+.+.+. .||++.|++.+++.++.
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-IGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHh
Confidence 89888888888888999999999999999999999999999999999988754 78999998888776654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=128.46 Aligned_cols=163 Identities=24% Similarity=0.347 Sum_probs=143.4
Q ss_pred HhhHhHHhhhhhHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchh-hhhhhhHHHHHHHHHHHHhc
Q 009617 115 LFGYHLGVVNGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR-TFQLDAVPLAAGAFLCATAQ 192 (531)
Q Consensus 115 ~~~~~~~~~~~~~~~i~~~~-~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~ 192 (531)
.............|.+.++. |.+..+. ++..+...++..++.+++|++.||+|||+ .+..+.++..++.++..+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444445556655554 8888888 99999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
+.+.+++..++.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+.+.+. .+|++.+++.+++.+
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-~~~~~~~~~~~~~~~ 342 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-GGYGGVFLILAALAL 342 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998854 789999999999887
Q ss_pred HHHHHhcc
Q 009617 273 LLALGMGL 280 (531)
Q Consensus 273 ~~~~~~~~ 280 (531)
+..+..++
T Consensus 343 i~~i~~~~ 350 (352)
T cd06174 343 LAALLLLL 350 (352)
T ss_pred HHHHHhee
Confidence 77666544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-13 Score=131.20 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=127.7
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
.++...++.|. .+. ++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++.+++.|
T Consensus 238 ~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 313 (399)
T PRK05122 238 FITLYYAARGW--DGA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHccc--ccc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444455565 344 66778888999999999999999999999999999988888888888888888889999999
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhccccc
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 283 (531)
++.+..++.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+. .||++.|++.+++.++..+..+++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-FGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999988888888888999999999999999999999998888888888754 68999999988887766665555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=127.65 Aligned_cols=151 Identities=22% Similarity=0.240 Sum_probs=127.2
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Q 009617 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207 (531)
Q Consensus 128 ~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 207 (531)
.++.+++|.++.+. +++.+...+...++.++.|++.||+|||+++.++.++..+......+.++.+.+++.+++.|++
T Consensus 224 ~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 301 (375)
T TIGR00899 224 LLIIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF 301 (375)
T ss_pred HHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668899998888 8888887777788899999999999999999888777776666666778888888899999999
Q ss_pred hhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcccc
Q 009617 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282 (531)
Q Consensus 208 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 282 (531)
.+...+....++.|..|++ +++++++++....+|..++|.+++.+.+. .||+..|++.++..++..+...+++
T Consensus 302 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 302 IGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER-WSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHheec
Confidence 8888888888999998764 67999999999999999999999988754 6899999998888877666665554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=129.19 Aligned_cols=155 Identities=18% Similarity=0.107 Sum_probs=116.9
Q ss_pred hhhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHH--HHHhchHHHHHH
Q 009617 123 VNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL--CATAQSVQTMII 199 (531)
Q Consensus 123 ~~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ 199 (531)
.....| ++++++|.+..+. ++..+.+.++..++.+++|+++||+|||+.+.....+..++..+ ....++...+.+
T Consensus 277 ~~~~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (467)
T PRK09556 277 IDNWSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA 354 (467)
T ss_pred HHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 333445 6778899999888 99999999999999999999999999998876655444443322 233456667778
Q ss_pred HHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHH-HHHHHHHhhcccCCC-----------CchhHHHHHHh
Q 009617 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGN-----------PLWWRTMFGLA 267 (531)
Q Consensus 200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~-----------~~gwr~~f~~~ 267 (531)
.+++.|++...........+.|.+|+++||.+.|+.+....+ |.+++|.+.|.+.+. ..+|+..|++.
T Consensus 355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~ 434 (467)
T PRK09556 355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL 434 (467)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence 888888654433333345677999999999999999988886 778899998888861 35799999988
Q ss_pred HHHHHHHHHHhc
Q 009617 268 AIPSILLALGMG 279 (531)
Q Consensus 268 ~~~~~~~~~~~~ 279 (531)
++..++..+..+
T Consensus 435 ~~~~~~~~~~~~ 446 (467)
T PRK09556 435 DIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHH
Confidence 777766555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=127.02 Aligned_cols=149 Identities=16% Similarity=0.164 Sum_probs=126.7
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
..+...++.+.+. . ++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|
T Consensus 238 ~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 313 (392)
T PRK12382 238 FVSLYFASKGWAM--A--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG 313 (392)
T ss_pred HHHHHHHhcCCch--h--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444445566543 4 66677788888999999999999999999999999999998888888888888888999999
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
++.+...+.....+.|.+|+++|+++.++++....+|..+||.+.+.+.+. .||++.|++.+++.++..+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-FGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHH
Confidence 999988888888899999999999999999999999999999999998854 7899999999887766555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-13 Score=131.52 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=123.5
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--cchhhhh--hhhHHHHHHHHHHHHhchHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQ--LDAVPLAAGAFLCATAQSVQTMIIGR 201 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r 201 (531)
.+|.+.+++|.+..+. +++.++..++..+++++.|+++||. ++|+... .+.++.+++.+++.+.++++.+++.+
T Consensus 263 ~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4555667789998888 9999999999999999999999983 3443333 33444455556667788999999999
Q ss_pred HHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHH
Q 009617 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (531)
Q Consensus 202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~ 276 (531)
++.|++.+...+...+++.|.+|++++++.+++++....+|.++||.+++.+.+...+|++.|++.+++.++..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999998889999999999999999999999999999999999999999886544699999998887765544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-12 Score=126.96 Aligned_cols=157 Identities=18% Similarity=0.113 Sum_probs=115.9
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHH---h-chHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---A-QSVQTMIIGR 201 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r 201 (531)
..+++.+++|.+.... ..+..+..+...++.+++|+++||+|||+++..+.++..++.+.... . ++...+++..
T Consensus 273 ~~~y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T PRK09952 273 ALNYSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSI 350 (438)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4456678889887765 55555666677788899999999999999998887766555443322 2 2344445566
Q ss_pred HHHHhhhhhccchhhhhhhhcCCccccchhHHHHH-HHHHHHHHHHHHhhcccCCCC-chhHHHHHHhHHHHHHHHHHhc
Q 009617 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNP-LWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~-~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
++.|++.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+.+.+.. .+|+..+...++..++..+..+
T Consensus 351 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 77788888888888899999999999988888854 445588899999999886532 4588888888777777666665
Q ss_pred ccccc
Q 009617 280 LSPES 284 (531)
Q Consensus 280 ~~~e~ 284 (531)
.++|+
T Consensus 431 ~~~~~ 435 (438)
T PRK09952 431 LMKDN 435 (438)
T ss_pred Hcccc
Confidence 56654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=124.62 Aligned_cols=147 Identities=11% Similarity=0.003 Sum_probs=129.4
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
..|...+|+|.++.++ |++.++..++..++.++++++.||+|+|+.+.++.++.++..++.+++++.+.+++.+++.|
T Consensus 227 ~~~~~l~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g 304 (382)
T TIGR00902 227 FSAIYWQAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC 304 (382)
T ss_pred HHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 4454556799999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHH-HHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~ 277 (531)
+..+...+....++.+. |+++|++..++++ ...++|.++|++++|.+.+. .|+ ..|++.+++.++..++
T Consensus 305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-LGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHHHH
Confidence 99999999999999998 8888999999986 56789999999999999965 576 6677777777655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=128.57 Aligned_cols=156 Identities=20% Similarity=0.173 Sum_probs=127.7
Q ss_pred hhhhHHHHHHhcCCCcchh--HHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHH
Q 009617 123 VNGALEYLAKDLGIAENTV--LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIG 200 (531)
Q Consensus 123 ~~~~~~~i~~~~~~s~~~~--~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (531)
..+..+...++.+.+..+. ..+.+.+++.++..++.+++|+++||+|||+.+..+.++..++.+...+.++.+.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3344554444443332221 22666777788888999999999999999999999998888888888888888889999
Q ss_pred HHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc
Q 009617 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
+++.|++.+...+....++.+..++++||+.++++.....+|..+||.+++.+.+. .||++.|++.+++.++..+..+
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-YGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998854 7899999999888877665553
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-12 Score=124.26 Aligned_cols=153 Identities=13% Similarity=0.063 Sum_probs=127.3
Q ss_pred hHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHH
Q 009617 126 ALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (531)
Q Consensus 126 ~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 204 (531)
..| ++++++|.+..+. +++.+.+.++..++.++.|+++||+|||+++.....+..+..++....++.+.+.+..++.
T Consensus 227 ~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T PRK03699 227 WVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGL 304 (394)
T ss_pred HHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 444 4557789999988 9999999999999999999999999999999888887777777777778887777888899
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcccc
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 282 (531)
|++.+..++....+..|..+. ++++..+.......+|..++|.+.+.+.+. .||+..+++.+++.++..+....++
T Consensus 305 G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 305 GFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAH-FGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-hCchhhhhhhHHHHHHHHHHHHHHH
Confidence 998888888888888887764 467888888888999999999999998864 7899999988887766655554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=126.93 Aligned_cols=147 Identities=20% Similarity=0.117 Sum_probs=114.2
Q ss_pred hhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHH--HHHHH--hchHHHHH
Q 009617 124 NGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA--FLCAT--AQSVQTMI 198 (531)
Q Consensus 124 ~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~ 198 (531)
....|. +++++|.+..+. +...+...++..++.+++|+++||+|||+.+..+..+..+.. +...+ .++.+.++
T Consensus 239 ~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
T TIGR00883 239 TTYLPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFF 316 (394)
T ss_pred HHHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 334444 457889998888 999999999999999999999999999998875555444333 22222 24667777
Q ss_pred HHHHHHHhhhhhccchhhhhhhhcCCccccchhHHH-HHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 199 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
+..++.|++.+...+....++.|.+|+++|+++.++ +..+..+|..++|.+++.+.+....|++.++...+..+
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 317 FLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 788999999888899999999999999999999998 45666788989999999988653338887766665443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=123.23 Aligned_cols=153 Identities=19% Similarity=0.185 Sum_probs=111.0
Q ss_pred hhhhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhh--hh------hhhHHHHHHHHHHHHhc
Q 009617 122 VVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT--FQ------LDAVPLAAGAFLCATAQ 192 (531)
Q Consensus 122 ~~~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~--~~------~~~~~~~~~~~~~~~~~ 192 (531)
......| ++.+++|.+..+. +++.+...++..++.+++|+++||+|||+. .. .+.++..+........+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (399)
T TIGR00893 233 FFLTWFPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN 310 (399)
T ss_pred HHHHHHHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch
Confidence 3334444 4567789988888 999999999999999999999999999961 11 11111111111112223
Q ss_pred hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch-hHHHHHHhHHHH
Q 009617 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPS 271 (531)
Q Consensus 193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g-wr~~f~~~~~~~ 271 (531)
+.+..+...++.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .| |++.|++.++..
T Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~-~g~~~~~~~~~~~~~ 388 (399)
T TIGR00893 311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT-TGSFAGALMVVAALA 388 (399)
T ss_pred hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC-CCchhHHHHHHHHHH
Confidence 44444444444455544 7888999999999999999999999999999999999999999865 56 999999888877
Q ss_pred HHHHHHh
Q 009617 272 ILLALGM 278 (531)
Q Consensus 272 ~~~~~~~ 278 (531)
++..+..
T Consensus 389 ~~~~~~~ 395 (399)
T TIGR00893 389 LIGALSY 395 (399)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-11 Score=117.41 Aligned_cols=346 Identities=16% Similarity=0.141 Sum_probs=208.8
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHH----HHHHHHHHHhHHhhhhhccchhhhhhhh
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSL----LAGATVGSFTGGSLADKFGRTRTFQLDA 178 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~----~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 178 (531)
+.+....++-.+..++......+..+.....++.+.... .+...... .+...+.++..|.++||+|||..+.+..
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~ 99 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLE-NGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL 99 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccch-hhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence 334455556666666666666667777777666543332 13333333 5677889999999999999999999999
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhhh--hhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009617 179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGI--GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN 256 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 256 (531)
+...+..++..+.. +|.++ +.|+.. +..+....++++|....++|....|+.......+..++|.+++.+.+.
T Consensus 100 ~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~ 174 (463)
T KOG2816|consen 100 FGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF 174 (463)
T ss_pred HHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 98888888777766 33333 444332 346677889999999999999999999999999999999999998855
Q ss_pred CchhHHHHHHhHHHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhh
Q 009617 257 PLWWRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335 (531)
Q Consensus 257 ~~gwr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (531)
.|.-..|.+..+..++..+ ..+++||+-....+. + .............. +....+....
T Consensus 175 -~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~---~~~~~~~~~~~~~~-------------~~~~~~~~~~ 234 (463)
T KOG2816|consen 175 -LGIALVFLIAAASGILSLLYMLLFLPESLQEKERS---D---ATLRELTPGSLDSS-------------HVADAFQSLT 234 (463)
T ss_pred -cCchHHHHHHHHHHHHHHHHHhhccccccCccccc---c---ccccccCCCcccch-------------hhhhhhhhhc
Confidence 7788888888887766555 445578775421111 0 00000000000000 0000111111
Q ss_pred c---cchhHHHHHHHHHHHHHHhhhHH-HHHHhHHHHHHHcCCChhhH---------------HHHHHHHhhhcCccHHH
Q 009617 336 S---SRYWKVVSVGAALFLFQQLAGIN-AVVYYSTSVFRSVGIESDVA---------------ASALVGAANVFGRKNLL 396 (531)
Q Consensus 336 ~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~---------------~~~~~~~~~~~gr~~~~ 396 (531)
+ .+....+.....+.......+.. ...+| .-..++++.... ......+...+|.++.+
T Consensus 235 ~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~y---l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i 311 (463)
T KOG2816|consen 235 KVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLY---LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLI 311 (463)
T ss_pred ccCCCccchHHHHHHHHHHHHHhcCceeEEEEE---EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 1 11111111111111111110000 00000 011223333322 22223456777888888
Q ss_pred HHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHH
Q 009617 397 TFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFV 476 (531)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 476 (531)
..+.....+..+.+++.. ..+.......+ ..+.....|...+..+...+++.+|.+.++...+..+.+.+
T Consensus 312 ~lGl~~~~~~~~~~af~~--------~~w~~~~~~v~--~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~ 381 (463)
T KOG2816|consen 312 SLGLLSEFLQLLLFAFAT--------ETWMMFAAGVV--VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVV 381 (463)
T ss_pred hHHHHHHHHHHHHHHHhc--------cchhhhHHHHH--HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhh
Confidence 888888888888888752 12222222222 22233455666668888889999999999999999999999
Q ss_pred HHHhhHHHHHh
Q 009617 477 IGLYFLSVVNK 487 (531)
Q Consensus 477 ~~~~~g~~~~~ 487 (531)
+|.+.+.++..
T Consensus 382 ~~~~~~~i~~~ 392 (463)
T KOG2816|consen 382 SPALYGNIFAL 392 (463)
T ss_pred hHHHHHHHHHH
Confidence 99999988754
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=121.15 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=120.9
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHH-HHHHHhchHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA-FLCATAQSVQTMIIGRVLA 204 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~ 204 (531)
..|.+.+++|.+..+. +++.+.+.++..+++++.|+++||+|||++.. +..+..++. .+....++.+.+++..++.
T Consensus 228 ~~~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 304 (390)
T PRK03545 228 IEPFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW 304 (390)
T ss_pred HHHHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 4566677789998888 99999999999999999999999999887544 444444443 3445567788888889999
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
|++.+...+.....+.+..| ++|+++++++.....+|..+||+++|.+.+. .|++..|++.+++.++..+...
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-LGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHH
Confidence 99987777777788888876 5789999999999999999999999999865 8999999999888866555443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=120.55 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=119.5
Q ss_pred hhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc---c--chhhhhhhhHHHHHHHHHHHHh----chH
Q 009617 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF---G--RTRTFQLDAVPLAAGAFLCATA----QSV 194 (531)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~---G--rr~~~~~~~~~~~~~~~~~~~~----~~~ 194 (531)
.+..+.+++++|+++.+. ....++..+...+ -+++|.++|-+ | ||+.++++.++..++.+..+.. .+.
T Consensus 10 ~~~~~~l~~~l~ls~~~~--~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQL--QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 347788999999999999 8888888887665 56799999976 2 5555567777776666655553 346
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCCc--cccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
....+.-++..+|......++-+++.|...+ ++||...+.......+|.+++..++|.+.+. .++++.|.+.+++.+
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-~~~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-FGPQGVFLISAALPL 165 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCeEEehHHHHHHH
Confidence 6666777888899999999999999998844 3367788888888899999999999998855 788999988887776
Q ss_pred HHHHHhccccc
Q 009617 273 LLALGMGLSPE 283 (531)
Q Consensus 273 ~~~~~~~~~~e 283 (531)
+..+..+++.|
T Consensus 166 l~~~~~~~~~~ 176 (433)
T PF03092_consen 166 LMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHhhh
Confidence 65555544433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=121.20 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=121.9
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
.+|.+.++.|.+..+. ++..+.+.++..+++++.|+++||+|+|+++..+..+.+++.+... + ...+....++.|
T Consensus 222 ~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 222 LMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 4666667789988888 9999999999999999999999999999999888888777665443 2 234456778888
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
++.....|.....+.|..|+++++.+.+.+....++|.++||.++|.+.+. .+|++.|++.+.+.++..+..+
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-YSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHH
Confidence 887778899999999999988888888888888999999999999998865 6899999988887766555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-12 Score=125.25 Aligned_cols=138 Identities=25% Similarity=0.236 Sum_probs=114.4
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHH-HHHHhchHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF-LCATAQSVQTMIIGRVLA 204 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~ 204 (531)
..+++.+++|.+..+. +++.+.+.++..++.++.|+++||+|||+.+.++.++.++..+ +....++.+.+.+..++.
T Consensus 261 ~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (405)
T TIGR00891 261 LPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQ 338 (405)
T ss_pred hHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 4456677899999988 9999999999999999999999999999999888776644333 334456667777777888
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch-hHHHHHH
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGL 266 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g-wr~~f~~ 266 (531)
|++.+...+....++.|.+|+++|++++|+.+....+|..++|++++.+.+. .| |+..+..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~g~~~~~~~~ 400 (405)
T TIGR00891 339 QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR-LDEYGTALAS 400 (405)
T ss_pred HHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHh
Confidence 8777777788889999999999999999999999999999999999999865 45 7766654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=119.17 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=121.9
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhc-hHHHHHHHHHH
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRVL 203 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l 203 (531)
...|.+.+++|.+..+. +...+.+.++..++.+++|++.||+|||+.+..+..+..++..+....+ +...+ .-++
T Consensus 226 ~~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l 301 (393)
T PRK09705 226 AWLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMV 301 (393)
T ss_pred HHHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHH
Confidence 34555556689998888 9999999999999999999999999999999888888777766554333 22222 2346
Q ss_pred HHhhhhhccchhhhhhhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH-hccc
Q 009617 204 AGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGLS 281 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~-~~~~ 281 (531)
.|++.+...+.......+.++ +++|++..++.+....++..++|.+.+++.+...+|...|++.++.+++..+. ..+.
T Consensus 302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 688888788877777777775 56789999999999999999999999999876445888888887777554444 4445
Q ss_pred ccchh
Q 009617 282 PESPR 286 (531)
Q Consensus 282 ~e~~~ 286 (531)
||++.
T Consensus 382 ~~~~~ 386 (393)
T PRK09705 382 PARFP 386 (393)
T ss_pred ccccc
Confidence 77654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-12 Score=128.13 Aligned_cols=144 Identities=20% Similarity=0.102 Sum_probs=113.5
Q ss_pred hhHHHHH-HhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh--chHHHHHHHH
Q 009617 125 GALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGR 201 (531)
Q Consensus 125 ~~~~~i~-~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r 201 (531)
..+|.+. +++|.+..+. +++.+.+.++..++.++.|+++||+|||+++..+.++..+..++.... .+.+.+.+..
T Consensus 296 ~~lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3455554 6899999999 999999999999999999999999999999988877776665544433 3344444555
Q ss_pred HHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHH
Q 009617 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (531)
Q Consensus 202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~ 271 (531)
++.+.......+....++.|.+|+++|++++++.+....+|..+||++++.+.+. .||+..+.+.+...
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~-~g~~~~~~~~~~~~ 442 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR-LDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc-CChHHHHHHHHHHH
Confidence 5555444445566778899999999999999999999999999999999999865 78988886665444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=121.39 Aligned_cols=158 Identities=15% Similarity=0.077 Sum_probs=132.3
Q ss_pred hhHHHHHHh-cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHH
Q 009617 125 GALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (531)
Q Consensus 125 ~~~~~i~~~-~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 203 (531)
...|.+.++ +|.+..+. +++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++
T Consensus 244 ~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 244 VLYPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HhhHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 345555555 89998888 999999999999999999999999888888888888888888888888888888888999
Q ss_pred HHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHH-HHHhcccc
Q 009617 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL-ALGMGLSP 282 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~-~~~~~~~~ 282 (531)
.|++.+...+...+++.|..|++.||++++++.....+|..+|+.+.|.+.+. .|++..+++.++..++. .+....++
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-MTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99998877777888999999999999999999999999999999999999864 67888888777666443 44444455
Q ss_pred cch
Q 009617 283 ESP 285 (531)
Q Consensus 283 e~~ 285 (531)
+.+
T Consensus 401 ~~~ 403 (417)
T PRK10489 401 ELR 403 (417)
T ss_pred ccc
Confidence 544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=125.29 Aligned_cols=161 Identities=13% Similarity=0.024 Sum_probs=124.0
Q ss_pred hhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh-----c----
Q 009617 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----Q---- 192 (531)
Q Consensus 122 ~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~---- 192 (531)
......|.+.+++|.+..+. ++....+.++..++.+++|+++||+|||+.+..+.++.+++.++.++. +
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK 379 (481)
T ss_pred ehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 33446788888999998777 889999999999999999999999999999999988888877766621 1
Q ss_pred --hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHH
Q 009617 193 --SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP 270 (531)
Q Consensus 193 --~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~ 270 (531)
+...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.+. .+|++.|++.+++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~-~~~~~~f~~~~~~ 458 (481)
T TIGR00879 380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES-IGVGGVFIFFGGL 458 (481)
T ss_pred chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccceehhHHHH
Confidence 2333333333333333334566777889999999999999999999999999999998887754 6899999998888
Q ss_pred HHHHHHHhc-ccccch
Q 009617 271 SILLALGMG-LSPESP 285 (531)
Q Consensus 271 ~~~~~~~~~-~~~e~~ 285 (531)
+++..+..+ +.||++
T Consensus 459 ~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 459 NVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHheecccCC
Confidence 766655544 456654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-11 Score=118.43 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=119.1
Q ss_pred hHHHHHHhcCCCcchhHHHHHHH-HHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHH---HHh-chHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVS-SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMIIG 200 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~ 200 (531)
..|++.+++|.+..+. +++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.
T Consensus 245 ~~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~ 322 (491)
T PRK11010 245 TTTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA 322 (491)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4566677899999999 99874 5668999999999999999999988877666555544332 333 355555555
Q ss_pred HHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc
Q 009617 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (531)
Q Consensus 201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~ 280 (531)
-++..++.|...+...++..+..+++.+++..++.+....+|..+++.+.|.+.+. .||+..|.+.++++++..+...+
T Consensus 323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-HGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHH
Confidence 66666555655666788889999999999999999999999988887888888764 68999999988888777666655
Q ss_pred ccc
Q 009617 281 SPE 283 (531)
Q Consensus 281 ~~e 283 (531)
+++
T Consensus 402 ~~~ 404 (491)
T PRK11010 402 CRQ 404 (491)
T ss_pred HHh
Confidence 544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-11 Score=116.40 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=117.6
Q ss_pred hhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhh-hhhHHHHHHHHHHHH-----hchHHHH
Q 009617 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCAT-----AQSVQTM 197 (531)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~l 197 (531)
....|.+.+++|.+..+. +++.+.+.++..++.++.|+++||+|||+.+. .+.+..+++.++..+ .++++.+
T Consensus 242 ~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 242 AVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 345667778899999888 99999999999999999999999999988764 333444444333332 2456777
Q ss_pred HHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH
Q 009617 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (531)
Q Consensus 198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~ 277 (531)
++..++.|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+. .||+..|++.+++.++..+.
T Consensus 320 ~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 320 LIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-FGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHH
Confidence 7888899988876544 4456677655 5799999999999999999999999998865 68999999998887666555
Q ss_pred hcc
Q 009617 278 MGL 280 (531)
Q Consensus 278 ~~~ 280 (531)
..+
T Consensus 397 ~~~ 399 (402)
T TIGR00897 397 TAF 399 (402)
T ss_pred HHH
Confidence 544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-10 Score=118.16 Aligned_cols=160 Identities=17% Similarity=0.073 Sum_probs=117.9
Q ss_pred hhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhc--hH-H-HHHH
Q 009617 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SV-Q-TMII 199 (531)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~-~-~l~~ 199 (531)
....|.+.+++|.+.... .+......+...++.++.|+++||+|||++++.+.++.+++.++.+... +. . ....
T Consensus 291 ~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 345688888999987766 7777778888899999999999999999999999999998887765432 21 1 2223
Q ss_pred HHHHHHhhhhh-ccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC-----CCCchhHHHHHHhHHHHHH
Q 009617 200 GRVLAGIGIGI-SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-----GNPLWWRTMFGLAAIPSIL 273 (531)
Q Consensus 200 ~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-----~~~~gwr~~f~~~~~~~~~ 273 (531)
+.++.+++.+. ..+....+++|.+|+++|++++++......+|.++++.+.+.+. ....+|++.|++.++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 448 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence 34444444443 23667899999999999999999999999988888765554332 1236788899888877766
Q ss_pred HHHHhc-ccccch
Q 009617 274 LALGMG-LSPESP 285 (531)
Q Consensus 274 ~~~~~~-~~~e~~ 285 (531)
..+..+ +.||++
T Consensus 449 ~~~~~~~~~~e~~ 461 (479)
T PRK10077 449 AALFMWKFVPETK 461 (479)
T ss_pred HHHHHHhccccCC
Confidence 555444 456654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-11 Score=116.36 Aligned_cols=168 Identities=14% Similarity=0.022 Sum_probs=141.7
Q ss_pred HHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccch--hhhhhhhHHHHHHHHHHHH-
Q 009617 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCAT- 190 (531)
Q Consensus 114 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~- 190 (531)
+.+++ .++......+..+++|++..+. ..+.-+..+..+++++++|++.||+|.| ++++++++++.+..+...+
T Consensus 293 ~~dg~-~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G 369 (477)
T PF11700_consen 293 YSDGV-NTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFG 369 (477)
T ss_pred HHHHH-HHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34444 3344556677788999999998 8888888889999999999999999999 8998888888666665555
Q ss_pred -------hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHH
Q 009617 191 -------AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (531)
Q Consensus 191 -------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~ 263 (531)
.++-+.+.+.-++.|++.|..++...++.+|..|+++.+..+|++....-....+||++.+.+.+...+-|+.
T Consensus 370 ~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g 449 (477)
T PF11700_consen 370 FWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYG 449 (477)
T ss_pred hhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 6788889999999999999999999999999999999999999999999999999999999998765568888
Q ss_pred HHHhHHHHHHHHHHhcccccc
Q 009617 264 FGLAAIPSILLALGMGLSPES 284 (531)
Q Consensus 264 f~~~~~~~~~~~~~~~~~~e~ 284 (531)
++...++.++.+++.++++.+
T Consensus 450 ~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 450 FLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHHHHHHHHHHhhccch
Confidence 888888777777666665443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-11 Score=114.82 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=120.2
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Q 009617 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207 (531)
Q Consensus 128 ~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 207 (531)
|...+|.|.+..+. |.+.++..++..+..++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++..++.|++
T Consensus 229 ~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 229 AIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44446799998888 9999999999999999999999999999999999999999888888899999999999999999
Q ss_pred hhhccchhhhhhhhcCCccccchhHHHHH-HHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHH
Q 009617 208 IGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (531)
Q Consensus 208 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~ 276 (531)
.+...+....++.+. +++++++..+.+. ....+|..+||.++|.+.+. .|+ ..|+..+++.++.++
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~-~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH-LGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHHH
Confidence 998888888888887 5555788888876 55677889999999999865 566 466666666554433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-11 Score=117.42 Aligned_cols=151 Identities=17% Similarity=0.091 Sum_probs=103.8
Q ss_pred hHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--cchhhh-hhhhHHHHHHHHHHHH--hchHHHHHH
Q 009617 126 ALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVPLAAGAFLCAT--AQSVQTMII 199 (531)
Q Consensus 126 ~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~-~~~~~~~~~~~~~~~~--~~~~~~l~~ 199 (531)
.+|. ++++.|.+..+. ++...++.++..++.+++|+++||+ |||+.. +....+..++.++..+ ..+.+.+++
T Consensus 275 ~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 352 (452)
T PRK11273 275 WSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMA 352 (452)
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 4444 555689988888 8899999999999999999999999 555433 2222333333332222 234444445
Q ss_pred HHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHH-HHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHh
Q 009617 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL-AALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 200 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~ 278 (531)
..++.|.+..........++.|.+|+++||+++|+.+....+|.. ++|.+.+.+.+. .||+..|++.++.+++.++..
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~-~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH-hcchHHHHHHHHHHHHHHHHH
Confidence 555556543333333345678999999999999999988888765 578888888755 689999998888776655544
Q ss_pred c
Q 009617 279 G 279 (531)
Q Consensus 279 ~ 279 (531)
.
T Consensus 432 ~ 432 (452)
T PRK11273 432 I 432 (452)
T ss_pred H
Confidence 3
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-11 Score=118.46 Aligned_cols=130 Identities=18% Similarity=0.106 Sum_probs=108.1
Q ss_pred hhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHH
Q 009617 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR 201 (531)
Q Consensus 122 ~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 201 (531)
......|.+.+++|.+..+. ++..+...++..++.++.|+++||+|||+.+....+......++.....+.+.+++..
T Consensus 268 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (398)
T TIGR00895 268 FLTNWLPKLMVELGFSLSLA--ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLG 345 (398)
T ss_pred HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 34445678889999998888 9999999999999999999999999999555444443333333333356777788888
Q ss_pred HHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhccc
Q 009617 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (531)
Q Consensus 202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 253 (531)
++.|++.+...+...+++.|.+|+++|++++++......+|..+||.++|.+
T Consensus 346 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 346 AIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999999999999999999999999999998865
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.8e-11 Score=115.77 Aligned_cols=140 Identities=8% Similarity=0.067 Sum_probs=118.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccch
Q 009617 135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAI 214 (531)
Q Consensus 135 ~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 214 (531)
+.+.... |.+.++..+...++.++.|++.||+|+|+.+.++.++.++..++.+.+++.+.+++.+++.|++.......
T Consensus 250 ~~~~~~~--g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 327 (396)
T TIGR00882 250 QQGTRVF--GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVG 327 (396)
T ss_pred ccchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 4444556 88899988999999999999999999999999999999998888788899999999999999988766666
Q ss_pred hhhhhhhcCCccccchhHHH-HHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH
Q 009617 215 VPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (531)
Q Consensus 215 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~ 277 (531)
...++.+..+++.++...+. ++....+|.+++++++|.+.+. .||+..|.+.+++.++..+.
T Consensus 328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-IGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 67778888888877776665 6678899999999999999864 68999999998887665543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-10 Score=106.51 Aligned_cols=182 Identities=16% Similarity=0.063 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHhhHhHHhhhhhHHHHHHh-cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 104 PFVGVACLGAILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
...+.+|+..|...+ +-.-..+.|++.+. .|++++++ ..-+.-.....+....++...+.|..|.|++++++.+...
T Consensus 5 ~~~~llc~~gf~~~f-rPsEPfl~~yL~~~~kn~T~~qv-~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i 82 (412)
T PF01770_consen 5 KITLLLCLFGFFKEF-RPSEPFLTPYLTGPDKNFTEEQV-NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI 82 (412)
T ss_pred HHHHHHHHHHHHHhc-CCCCccchHHHcCCccCCCHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344555555555544 22233456677665 78888887 2455666667778888999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC-CCchhH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-NPLWWR 261 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~gwr 261 (531)
+...+..+.++...+-+..++-|++.+. ..+-.+++-...++++-.++.+...+...+|..++.++|=.+.. ...+.+
T Consensus 83 ~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~ 161 (412)
T PF01770_consen 83 ITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYF 161 (412)
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 9999999999999999999999999774 67778889888898888899999998888888888888776654 235677
Q ss_pred HHHHHhHHHHHHHHHHhcccccchhHH
Q 009617 262 TMFGLAAIPSILLALGMGLSPESPRWL 288 (531)
Q Consensus 262 ~~f~~~~~~~~~~~~~~~~~~e~~~~~ 288 (531)
..+++......+.++..+++|..++..
T Consensus 162 ~L~~isl~~~~~a~~~~~fLP~~~~S~ 188 (412)
T PF01770_consen 162 QLNYISLASVSLALLIALFLPMPKRSL 188 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 777776666666666777787766533
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.5e-11 Score=116.41 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=104.7
Q ss_pred hhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--cchhhh-hhhhHHHHHHHHH--HHHhchHHHHH
Q 009617 125 GALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVPLAAGAFL--CATAQSVQTMI 198 (531)
Q Consensus 125 ~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~-~~~~~~~~~~~~~--~~~~~~~~~l~ 198 (531)
...| ++.+++|.+..+. ++..+.+.++..++.+++|+++||+ ++|+.. ....+...+...+ .....+...+.
T Consensus 264 ~~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (434)
T PRK11663 264 DWGNLYMSETLGVDLVTA--NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQA 341 (434)
T ss_pred HHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence 3444 4557789999888 9999999999999999999999999 333332 2211111111111 11123333333
Q ss_pred HHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHh
Q 009617 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 199 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~ 278 (531)
+..+..|++...........+.|.+|+++|++++|+.+....+|.+++|.+.+.+.+. .||+..|++.+++.++..+..
T Consensus 342 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 342 ACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-WHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-cccHHHHHHHHHHHHHHHHHH
Confidence 4445555543322223345678999999999999999999999999999999998865 789999999988886665544
Q ss_pred c
Q 009617 279 G 279 (531)
Q Consensus 279 ~ 279 (531)
+
T Consensus 421 ~ 421 (434)
T PRK11663 421 L 421 (434)
T ss_pred H
Confidence 3
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=117.21 Aligned_cols=161 Identities=18% Similarity=0.105 Sum_probs=109.1
Q ss_pred hHHHHHHhcCCCcchhH---------HHH-HHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhch--
Q 009617 126 ALEYLAKDLGIAENTVL---------QGW-IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS-- 193 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~---------~~~-~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-- 193 (531)
..|.+.++.|.+..+.. ... ...+..++..++.+++++++||+|||++++.+.++.+++.++.++..+
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777788887654220 011 233344566678889999999999999998888887777666554321
Q ss_pred --HHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC---------CchhHH
Q 009617 194 --VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN---------PLWWRT 262 (531)
Q Consensus 194 --~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------~~gwr~ 262 (531)
...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.++++.+.+.+.+. ..++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 111111111122222234456677789999999999999999999999999999998887652 134566
Q ss_pred HHHHhHHHHHHHHHHhcccccchh
Q 009617 263 MFGLAAIPSILLALGMGLSPESPR 286 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~~~ 286 (531)
.|++.+++.++..+..+++||++.
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCCC
Confidence 777877777666666667798754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=115.58 Aligned_cols=135 Identities=17% Similarity=0.165 Sum_probs=100.9
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
.+|.+.++.|.+..+. +.+.+.+.++..++.+++|++.||+|||+.+..+.++..+..+.....++.....+.-++.|
T Consensus 253 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (426)
T PRK12307 253 LLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG 330 (426)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 5566666788888888 88999999999999999999999999999998888777666555443332222222223333
Q ss_pred h--hhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHH
Q 009617 206 I--GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (531)
Q Consensus 206 ~--~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~ 263 (531)
+ +.....+....++.|.+|++.|++++|+......+|..++|.+.+.+.+. .|+...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~-~g~~~~ 389 (426)
T PRK12307 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT-MGLGAA 389 (426)
T ss_pred HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc-ccHHHH
Confidence 3 22233445667889999999999999999999999999999999998854 555543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=100.27 Aligned_cols=159 Identities=20% Similarity=0.184 Sum_probs=111.5
Q ss_pred hhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHH
Q 009617 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (531)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 203 (531)
+|..-.+-+++|.++.++ +.+....+....+..++.|.++||+|||+.-++..++.+++++ +-..++++.++++|++
T Consensus 54 GpY~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 54 GPYLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVL 130 (354)
T ss_pred cchhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHH
Confidence 444444557899999999 9999999999999999999999999999999999999999886 4556899999999999
Q ss_pred HHhhhhhccchhhhh-hhhcCCc----cccchhHHHHH-HHHHHHHHHHHHhhcccCCC-CchhHHHHHHhHHHHHHHHH
Q 009617 204 AGIGIGISSAIVPLY-ISEISPT----EIRGALGSVNQ-LFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLAL 276 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~-i~~~~~~----~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~-~~gwr~~f~~~~~~~~~~~~ 276 (531)
.|++.+..+.+.-++ +.|.-.+ +..+..++... ..+++-.+++.+++-++.+. ..|-..+|.....+.++..+
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 999999998887765 4554322 22233333222 22222234444444444332 12347788777766655554
Q ss_pred Hh-cccccch
Q 009617 277 GM-GLSPESP 285 (531)
Q Consensus 277 ~~-~~~~e~~ 285 (531)
+. ...+|..
T Consensus 211 ~I~~~W~ENy 220 (354)
T PF05631_consen 211 LILKTWPENY 220 (354)
T ss_pred HHHhcccccC
Confidence 44 3456654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-10 Score=114.21 Aligned_cols=150 Identities=23% Similarity=0.218 Sum_probs=133.7
Q ss_pred hhHHHHH-HhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHH
Q 009617 125 GALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (531)
Q Consensus 125 ~~~~~i~-~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 203 (531)
..+|.+. +++|.+...+ |++.+++.+|..+++++.+++.+|+++++++..+.++++++.+..+++++.+..++.-++
T Consensus 239 aLlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l 316 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL 316 (524)
T ss_pred HhhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4567655 5689999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH
Q 009617 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~ 277 (531)
.|++.....+...+.+.+..|++.|||.++++.+....+..+|.++.|.+.+. .|-+..+.+.++..++..++
T Consensus 317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~-~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH-FGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999999999999999999854 78888888777655444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-10 Score=105.62 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=129.0
Q ss_pred HHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh-chHHHHH
Q 009617 120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMI 198 (531)
Q Consensus 120 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 198 (531)
...+..+-|.+++..|.+.+.+ +++.-+|.++..+++++.|+++|| +.|+.+.....+.++..+...+. ++.+..+
T Consensus 228 F~~ftYi~P~L~~v~g~s~~~v--s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~ 304 (394)
T COG2814 228 FALYTYIRPFLESVAGFSVSAV--SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304 (394)
T ss_pred hhhHHhHHHHHHHccCCCHhHH--HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3455568899999999999999 999999999999999999999999 99999998888887777766655 4555666
Q ss_pred HHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHh
Q 009617 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 199 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~ 278 (531)
+.-++.|+..+.........+++ ..++.+..+.+++....++|..+|..+||.+.++ .|+....++.+++.++..++.
T Consensus 305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LGYAATGWVGAALLLLALLLA 382 (394)
T ss_pred HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHH
Confidence 66677888777666666666666 3356689999999999999999999999999976 899999999999887766655
Q ss_pred cc
Q 009617 279 GL 280 (531)
Q Consensus 279 ~~ 280 (531)
+.
T Consensus 383 ~~ 384 (394)
T COG2814 383 LL 384 (394)
T ss_pred HH
Confidence 43
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-10 Score=114.47 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=108.5
Q ss_pred hhhhhHHHHHH-hcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh---chHHHH
Q 009617 122 VVNGALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTM 197 (531)
Q Consensus 122 ~~~~~~~~i~~-~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l 197 (531)
......|++.+ .+|.+..+. +++...+.++..++.+++|++.||+|||+++..+.++.+++.++..+. ++.+.+
T Consensus 279 ~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (471)
T PRK10504 279 MLPFMTPVFLQIGLGFSPFHA--GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLL 356 (471)
T ss_pred HHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 33445665554 588888888 999988888888889999999999999999999988888877766653 334445
Q ss_pred HHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
.+..++.|++.+...+....++.+..|+++++.+.++.+....+|..+|+.+++.+.
T Consensus 357 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 357 PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889988888888999999999999999999999999999999999988765
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.9e-11 Score=120.22 Aligned_cols=137 Identities=19% Similarity=0.108 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchH--HHHHHHHHHHHhhhhhccchhhhhhhhcCC
Q 009617 147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVLAGIGIGISSAIVPLYISEISP 224 (531)
Q Consensus 147 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 224 (531)
..+..+...++.++.+++.||+|||+++.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556667888999999999999999999999999988888877654 445556677777777788888999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcccccchh
Q 009617 225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286 (531)
Q Consensus 225 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~ 286 (531)
++.|+.++|+......+|.+++|.+.+ +.+ .++...+++.++..++..+..+++||+..
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE--KWLFLPLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH--HHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 999999999999999999999999988 432 56778888888888777777778888753
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=105.54 Aligned_cols=179 Identities=15% Similarity=0.075 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
-.+.+++.-..+.++.+. .+.....+-+.++|++..+. .++.-...+..+++++++|+|.||+|.|+++..+++++.
T Consensus 253 ~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 253 NLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred chHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 334455555556666643 33444455666999999999 888888889999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q 009617 183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT 262 (531)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~ 262 (531)
+.++..-+...-..+.+.-.+.|++.|+.+..+.++.++..|+++-++.+|++....-.+..+||.+-+.+.+....-|.
T Consensus 330 ~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~ 409 (438)
T COG2270 330 IAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRA 409 (438)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhh
Confidence 99888877777777777889999999999999999999999999999999999999999999999999998865566788
Q ss_pred HHHHhHHHHHHHHHHhcccccc
Q 009617 263 MFGLAAIPSILLALGMGLSPES 284 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~ 284 (531)
-+....++..+..+..+++|+.
T Consensus 410 g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 410 GVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHhhHhhEEeecCC
Confidence 7777777776666666666654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-10 Score=111.43 Aligned_cols=152 Identities=16% Similarity=0.038 Sum_probs=97.9
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH--H--hchHHHHHHHHH
Q 009617 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA--T--AQSVQTMIIGRV 202 (531)
Q Consensus 127 ~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~ 202 (531)
.+++.+++|.+..+. ++..++..++..+++++.|+++||+|||+++.++.++.++..+... . .++....+..-+
T Consensus 267 p~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (432)
T PRK10406 267 QKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVM 344 (432)
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344567789988888 8888888888889999999999999999988776655443332221 1 122222222222
Q ss_pred HHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHH-HHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhccc
Q 009617 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281 (531)
Q Consensus 203 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 281 (531)
+.+++.+...+....+++|++|++.|+.++|+.+....+ +....|.+.+.+. ....|...+++.++..++..+..+++
T Consensus 345 ~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 345 CALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 233333334455667889999999999999998765443 2334777777553 32336666666655555555544444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-10 Score=104.05 Aligned_cols=171 Identities=20% Similarity=0.205 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--cchhhh-hhhhHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVP 180 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~-~~~~~~ 180 (531)
.++.++++++..+..+..+.--.| ++.|..|.+..+. ++..++|=.+...+.+++|+++||+ |||..+ ++.+++
T Consensus 253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a--~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA--NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 345566677777776766655444 5778889999999 9999999999999999999999995 787666 445555
Q ss_pred HHHHHHHHHHhc--hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHH-HHHHHHHhhcccCCCC
Q 009617 181 LAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNP 257 (531)
Q Consensus 181 ~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~ 257 (531)
..++.+..-+++ |+....++-++.|+..-+..-.......|..|++--|.+.|+...+.-+ |.+.+....+.+.+.
T Consensus 331 i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~- 409 (448)
T COG2271 331 ITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT- 409 (448)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec-
Confidence 555555555555 4577788889999887666666667788999999999999999998888 888888888888866
Q ss_pred chhHHHHHHhHHHHHHHHHHh
Q 009617 258 LWWRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 258 ~gwr~~f~~~~~~~~~~~~~~ 278 (531)
.||...|.+..+.+++..++.
T Consensus 410 ~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 410 WGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred CCCcchHHHHHHHHHHHHHHH
Confidence 899999988877776655444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=113.20 Aligned_cols=129 Identities=17% Similarity=0.269 Sum_probs=116.1
Q ss_pred hhHHHHHHh-cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhch-HHHHHHHHH
Q 009617 125 GALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS-VQTMIIGRV 202 (531)
Q Consensus 125 ~~~~~i~~~-~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~ 202 (531)
...|.+.++ +|.+..+. +++.+.+.++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ ++.+++..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHY--GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HHhHHHHHHHhCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 456666655 89998888 99999999999999999999999999999999888888888888887774 888889999
Q ss_pred HHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 203 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
+.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+++.+.+
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988764
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-10 Score=112.80 Aligned_cols=173 Identities=20% Similarity=0.191 Sum_probs=151.0
Q ss_pred HHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhcc--chhhhhhhhHHHHHHH
Q 009617 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGA 185 (531)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~ 185 (531)
...+......+...+....+|...++.+.++.+. +.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 3344444455555566668888999999999999 99999999999999999999999988 4566678888889999
Q ss_pred HHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHH
Q 009617 186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (531)
Q Consensus 186 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~ 265 (531)
+.+.++++++.++..-.+.|++.|........++.|..+.++-..+.|+.....+++.++||.+++.+.+...+|...|+
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~ 459 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY 459 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence 99999999999999999999999988888888999999999999999999999999999999999988877666999999
Q ss_pred HhHHHHHHHHHHhcccc
Q 009617 266 LAAIPSILLALGMGLSP 282 (531)
Q Consensus 266 ~~~~~~~~~~~~~~~~~ 282 (531)
..++..++..+.+++.+
T Consensus 460 ~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 460 FCGLCFLLSAVLLLILR 476 (509)
T ss_pred hcChHHHHHHHHHHHhH
Confidence 99999888777776655
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.5e-10 Score=98.32 Aligned_cols=175 Identities=16% Similarity=0.056 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
|..+..........+. ...++..-|++++.+|.+.+|. +.+.++-.+|..+ +++.|.+.|++|+|.++.+|.+...
T Consensus 2 W~~l~a~~~v~~~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~ 77 (250)
T PF06813_consen 2 WLSLVASIWVQLCSGT-TYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGF 77 (250)
T ss_pred hhhHHHHHHHHHhcCc-ccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4444444444444432 3345567789999999999999 9999999999876 5889999999999999999999999
Q ss_pred HHHHHHHHh-------chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 183 AGAFLCATA-------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 183 ~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
++..+..++ .++|.+.+..++.|.+.+.....+.....+.||. +||.+.|+.-...+++..+-..+...+.+
T Consensus 78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 998877654 4678888888888888777777777777899986 59999999999999987655555444443
Q ss_pred CCchhHHHHHHhHHHHHHHHHHhccccc
Q 009617 256 NPLWWRTMFGLAAIPSILLALGMGLSPE 283 (531)
Q Consensus 256 ~~~gwr~~f~~~~~~~~~~~~~~~~~~e 283 (531)
. ..-...+.......++.++..++++.
T Consensus 157 ~-~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 157 D-DPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred C-ChHHHHHHHHHHHHHHHHHHhhheec
Confidence 3 33344443333344444445455433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=112.96 Aligned_cols=152 Identities=17% Similarity=0.107 Sum_probs=109.2
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchh-------hhhhhhHHHHHHHHHHHHhchHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR-------TFQLDAVPLAAGAFLCATAQSVQTMI 198 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (531)
..+++.+++|.+..+. +++.+++.++..++.+++|+++||+|||+ .+.+..++.+++.++.+..++.+..+
T Consensus 275 ~p~~l~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 352 (476)
T PLN00028 275 IAEYFYDRFGLSLETA--GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAI 352 (476)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 3345677889999888 99999999999999999999999998762 22333333344444455566666666
Q ss_pred HHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHh
Q 009617 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 199 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~ 278 (531)
+.-++.+++.+...+....++.+..| ++||.+.|+...+..+|.++++.+.+ . +...+|+..|++.+++.++..+..
T Consensus 353 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~-~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 353 VVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-T-GSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-h-cCCccHhhHHHHHHHHHHHHHHHH
Confidence 66667777666555556666667654 57999999998888888888877654 1 123579999999988877766666
Q ss_pred cccc
Q 009617 279 GLSP 282 (531)
Q Consensus 279 ~~~~ 282 (531)
++++
T Consensus 430 ~~~~ 433 (476)
T PLN00028 430 AFIH 433 (476)
T ss_pred Hhee
Confidence 5553
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=111.42 Aligned_cols=150 Identities=14% Similarity=0.055 Sum_probs=118.7
Q ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh-chHHHHHHHHHHHHhhhhh
Q 009617 132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGI 210 (531)
Q Consensus 132 ~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~ 210 (531)
++.+.+.... +++.+.+.+.....+++.|.+.||+++|+.+..++++..++.++..+. ++.+.+++..++.|+|.+.
T Consensus 237 ~~~~~~~~~~--g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (395)
T PRK10054 237 ADSDFAEKVV--AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEII 314 (395)
T ss_pred cccchHHHHH--HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 3455555556 888888888888888999999999999999999988888888777764 5777777888999999988
Q ss_pred ccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc-ccccch
Q 009617 211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-LSPESP 285 (531)
Q Consensus 211 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~e~~ 285 (531)
..|....++.+..|++.|+++.+... ...+|..+||.++|.+.+. .|....|++.++...+..+..+ ...|.|
T Consensus 315 ~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 315 YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT-LPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH-cChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 88888899999999999999988765 4568999999999999865 6888888777666544444333 344444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.1e-10 Score=108.30 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=111.0
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH-HhchHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-TAQSVQTMIIGRVLA 204 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~ 204 (531)
..|++.+.+|.+..+. +++.+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.. +.++.+..++..++.
T Consensus 222 ~~~~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T PRK10091 222 IKPYMMFISGFSETSM--TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFIC 299 (382)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567777789999888 9999999999999999999999999999999988888887776554 345556666666777
Q ss_pred Hhhhhhccchhhh-hhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH
Q 009617 205 GIGIGISSAIVPL-YISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (531)
Q Consensus 205 G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~ 277 (531)
+++.....+.... ...+..+++.++.+ ..+....+|.++||.+++.+.+...+|++.+++.++++++....
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 300 CAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 7765544444443 34444444444444 34667889999999999998875578999999888777554433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=112.72 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=102.0
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHH---HHHHHHHh--chHHHHHHHHH
Q 009617 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA---GAFLCATA--QSVQTMIIGRV 202 (531)
Q Consensus 128 ~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~---~~~~~~~~--~~~~~l~~~r~ 202 (531)
.++++..|.+..+. ++....+.++..++.+++|+++||+|+++....+..+..+ +.+..... .+.+...+..+
T Consensus 276 ~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (438)
T TIGR00712 276 TYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMI 353 (438)
T ss_pred HHHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 44555679888888 9999999999999999999999999754322233322211 11211221 23343334445
Q ss_pred HHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHH-HHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHH-Hhcc
Q 009617 203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GMGL 280 (531)
Q Consensus 203 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~-~~~~ 280 (531)
+.|++...........+.|.+|+++|+.+.|+.+....+| .+++|.+.+.+.+. .||.+.|++..+..++..+ ..++
T Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 354 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred HHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 5555432222222346789999999999999998877776 57899999988865 6899999887776655444 3344
Q ss_pred cccch
Q 009617 281 SPESP 285 (531)
Q Consensus 281 ~~e~~ 285 (531)
++|++
T Consensus 433 ~~~~~ 437 (438)
T TIGR00712 433 MIGEK 437 (438)
T ss_pred Hhhcc
Confidence 56653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.8e-10 Score=123.71 Aligned_cols=145 Identities=23% Similarity=0.298 Sum_probs=124.5
Q ss_pred hHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAEN-TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (531)
Q Consensus 126 ~~~~i~~~~~~s~~-~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 204 (531)
..+++.+++|.+.. +. +++.+++.++..++++++|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.
T Consensus 255 ~~~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF 332 (1146)
T ss_pred hHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44566778999988 78 9999999999999999999999999999999999999988888888888998888999999
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
|++.+...+...+++.+.+|+++||+++++.+....+|.++++.+++.+.....++...|++.+.+.+
T Consensus 333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999888889999999999999999999999999999988888877665322456666766655543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=106.97 Aligned_cols=150 Identities=11% Similarity=-0.013 Sum_probs=108.9
Q ss_pred HHHHHHhHHHHHHHcCCChhhHH--------------HHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcc
Q 009617 358 INAVVYYSTSVFRSVGIESDVAA--------------SALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 423 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (531)
...+.+..+.+.+++|.+....+ ...+.+.||+|||+.+..+.++..++.++..+.. +
T Consensus 24 ~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--------~ 95 (412)
T TIGR02332 24 RINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--------G 95 (412)
T ss_pred hhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--------C
Confidence 44555566777788888766322 2234468999999999999888888888776541 2
Q ss_pred hhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH------hhccchhhHHH
Q 009617 424 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN------KFGISTVYLGF 497 (531)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~------~~g~~~~~~~~ 497 (531)
....++.-++.+.+.+ +..+....++.|.+|+++|+.++|+.+....+|..+++.+.+.+.+ ..||++.|.+.
T Consensus 96 ~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~ 174 (412)
T TIGR02332 96 PESLYLLRILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLE 174 (412)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHH
Confidence 2233333334444433 3455665678999999999999999999999999999999998875 35899999998
Q ss_pred HHHHHHHHHHhheecccCC
Q 009617 498 ATVCLLAVLYIAVNVVETK 516 (531)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~ 516 (531)
++..++..++.+++.+|+.
T Consensus 175 ~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 175 GFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHHHHHHhhccCCCc
Confidence 8877776666666677664
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=107.55 Aligned_cols=134 Identities=15% Similarity=0.004 Sum_probs=96.0
Q ss_pred hhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHH-HH---HhchHHHHH
Q 009617 124 NGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL-CA---TAQSVQTMI 198 (531)
Q Consensus 124 ~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~~---~~~~~~~l~ 198 (531)
....|. +++.+|.+..+. ++....+.++..++.+++|+++||+|||++++.+.++..+..+. .. ..+++..+.
T Consensus 258 ~~~~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (434)
T PRK15075 258 TVYTPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARML 335 (434)
T ss_pred HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 334555 455589998887 88888889999999999999999999999987765544332221 11 123444455
Q ss_pred HHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHH-HHHHHHHHHHHhhcccCCCCchh
Q 009617 199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQL-FICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 199 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
+..++.|++.+...+....++.|.+|+++|+.++++... +..++..++|.+.+.+.+. .|+
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~-~g~ 397 (434)
T PRK15075 336 AVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV-TGD 397 (434)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh-cCC
Confidence 556666777776667777889999999999999998644 4444567788888887754 344
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=101.81 Aligned_cols=138 Identities=16% Similarity=0.133 Sum_probs=109.0
Q ss_pred hHHHHHH--hcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHH
Q 009617 126 ALEYLAK--DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (531)
Q Consensus 126 ~~~~i~~--~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 203 (531)
...++.+ .+|.++.+. ++..+.+..+..++.++.+++.||+|+|+++.++.++..++.++....++... ...-++
T Consensus 163 ~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l 239 (310)
T TIGR01272 163 LVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLA 239 (310)
T ss_pred HHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 4445543 368999888 99999999999999999999999999999998888888887766666554433 345568
Q ss_pred HHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHH
Q 009617 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI 269 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~ 269 (531)
.|++.+..+|...+...+.++++ .+.+.++. ....+|.+++|.+.|.+.+. .|.++.|++..+
T Consensus 240 ~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~-~g~~~a~~v~~~ 302 (310)
T TIGR01272 240 LGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC-LGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh-ccchHHHHHHHH
Confidence 89999999999999999988875 45666665 45668899999988888764 678888874443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-10 Score=110.47 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=99.5
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccc-hhhhh-hhh-HHHHHHHHHHHH--hchHHHHHHHH
Q 009617 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQ-LDA-VPLAAGAFLCAT--AQSVQTMIIGR 201 (531)
Q Consensus 127 ~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~-~~~-~~~~~~~~~~~~--~~~~~~l~~~r 201 (531)
.+++.+++|.+..+. +++.+.+.++..++.++.|+++||+++ |+... ... ....++...... ..+...+++..
T Consensus 240 ~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
T TIGR00881 240 PLYLTQEKGFSKEKA--SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL 317 (379)
T ss_pred HHHHHHHhCCCHHHH--HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 345667789998888 999999999999999999999998643 33222 211 111222222222 23455566667
Q ss_pred HHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHH
Q 009617 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF 264 (531)
Q Consensus 202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f 264 (531)
++.|+......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .||++.|
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~f 379 (379)
T TIGR00881 318 FALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG-FGWAGAF 379 (379)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh-hcccccC
Confidence 7778766656666677899999999999999999999999999999999999865 7888754
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-09 Score=104.12 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=115.8
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
..|.+.+++|.+..+. +++...+.++..++.++.|++.||.+++..+....+......++....++.+.+.+..++.|
T Consensus 239 ~~p~~~~~~g~s~~~~--g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G 316 (394)
T PRK10213 239 IRPVYMNLAGFGVDGL--TLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4577778899999888 99999999999999999999999965444344333334444455556677788888899999
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHH
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~ 276 (531)
++.+...+...+++.+..| ++++++.++......+|..+|+.++|.+.+. .|++..++..+++.++..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~-~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN-IGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHH
Confidence 9999888888888888887 4567888888888899999999999999865 7888888887766544433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=105.63 Aligned_cols=148 Identities=18% Similarity=0.081 Sum_probs=111.7
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHH-HHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHH------hchHHHHHH
Q 009617 127 LEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT------AQSVQTMII 199 (531)
Q Consensus 127 ~~~i~~~~~~s~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 199 (531)
.+.+.+|.|.+.++. |++...... ...++.++.|++.||+|+|+.+..+.++.++..+.... .++...++.
T Consensus 231 ~~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (390)
T TIGR02718 231 SKLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS 308 (390)
T ss_pred hhHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence 344446689999999 998888764 66677899999999999999998877666443332221 123334445
Q ss_pred HHHHHHhhhhhccchhhhhhhhcCCc-cccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH
Q 009617 200 GRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (531)
Q Consensus 200 ~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~ 277 (531)
..++.+++.+...+.....+.+..++ +++++.+++.+....+|..+||.++|.+.+. .||+..|++.+++.++..+.
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHH
Confidence 55666777777777788887777776 7789999999999999999999999999854 68999998887776655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-10 Score=101.33 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=97.2
Q ss_pred HHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHH
Q 009617 154 ATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233 (531)
Q Consensus 154 ~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 233 (531)
-.-|.++.+.+.||+|||+.|..+.++++++.++...+.+-..+.+.-|..-++.++.+.+.+.|..|.||..-|+...|
T Consensus 394 efPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvG 473 (528)
T KOG0253|consen 394 EFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVG 473 (528)
T ss_pred hCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchh
Confidence 34677899999999999999999999999999888776554433333344444455566788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcccccch
Q 009617 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESP 285 (531)
Q Consensus 234 ~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~ 285 (531)
.-....-+|.++.|+++ ...+ ..--.+..+.+...++..+...++|-++
T Consensus 474 tcSsmaRIggI~~p~iA-~~~e--~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 474 TCSSMARIGGIFSPVIA-MRAE--LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhHHhhhhhhhhHHH-HHhc--cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999 3322 2233444556666666667777776443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=104.83 Aligned_cols=149 Identities=12% Similarity=0.077 Sum_probs=105.8
Q ss_pred HHHHhHHHHHHHcCCChhhHH--------------HHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchh
Q 009617 360 AVVYYSTSVFRSVGIESDVAA--------------SALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGT 425 (531)
Q Consensus 360 ~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
......|.+.++.|.+....+ ...+.+.||+|||+.+..+.++..++.+.+.... +.+
T Consensus 23 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~ 94 (385)
T TIGR00710 23 MYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN--------NIE 94 (385)
T ss_pred HhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--------cHH
Confidence 333345677788888765332 2233458999999999998888888877766531 222
Q ss_pred HHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHH
Q 009617 426 LAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAV 505 (531)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 505 (531)
..++..++.+.+.+ ...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..+|+..+.+.+++.++..
T Consensus 95 ~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (385)
T TIGR00710 95 TLLVLRFVQAFGAS-AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLS 173 (385)
T ss_pred HHHHHHHHHHcchh-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 23333333333322 23445556889999999999999999999999999999999999999999999988888777776
Q ss_pred HHhheecccCCC
Q 009617 506 LYIAVNVVETKG 517 (531)
Q Consensus 506 ~~~~~~~~~~~~ 517 (531)
++.++..||+++
T Consensus 174 ~~~~~~~~~~~~ 185 (385)
T TIGR00710 174 ALIFFILPETLP 185 (385)
T ss_pred HHHHHhCCCCCC
Confidence 666655665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=100.98 Aligned_cols=170 Identities=16% Similarity=0.042 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG 184 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 184 (531)
.+.+.+...|......+.. .--+++++|+.+..+. |...+++.+...+..+.+|+++||+|.+|++......++++
T Consensus 222 ~lsllY~~tFG~Fvgfs~~--l~~~~~~~fg~~~~~A--g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 222 LLSLLYFATFGGFVGFSAY--LPMYLVTQFGLSPVTA--GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA 297 (417)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCChhhH--HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence 4445566666555544442 3446888999999999 99999999999999999999999999999999999998888
Q ss_pred HHHHHHhc-------hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q 009617 185 AFLCATAQ-------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257 (531)
Q Consensus 185 ~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 257 (531)
..+.++.. +...+++.-+..++..|........++..++++ +-|.+.|+..+.+++|...-|..-+...+..
T Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t 376 (417)
T COG2223 298 AALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT 376 (417)
T ss_pred HHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc
Confidence 88877663 344433333333333333334556667777765 5799999999999999888887777766554
Q ss_pred chhHHHHHHhHHHHHHHHHHhc
Q 009617 258 LWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 258 ~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
..+...|++.....+++.+..+
T Consensus 377 g~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 377 GSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 5699999998888877766553
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-09 Score=101.90 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=110.5
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh-----chHHHHHHHHHH
Q 009617 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQTMIIGRVL 203 (531)
Q Consensus 129 ~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l 203 (531)
.+.+++|.+..+. ++......++..++.++.|+++||+|+|+.+.++.++..++.++.++. ++++.+++.-++
T Consensus 241 ~~~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK15402 241 ILISGEQLSSYEY--GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSL 318 (406)
T ss_pred HHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 4567789998888 888888888899999999999999999999998888887777766553 356667788899
Q ss_pred HHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHH
Q 009617 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~ 273 (531)
.|++.+...+......... ++++||+..+.++....+|..+|+.+++.+.+. .+|....+..++.+++
T Consensus 319 ~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 319 YAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG-GGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC-CchHHHHHHHHHHHHH
Confidence 9999988777666555443 457899999999999999999999999998755 4555444444444433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=119.88 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=119.6
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh--------------
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-------------- 191 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------------- 191 (531)
..+++.+.+|.+.... |++.+++.++..+++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 248 ~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (1140)
T PRK06814 248 LPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI 325 (1140)
T ss_pred hHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence 3444566789998888 999999999999999999999999888877777766666665544443
Q ss_pred ------chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHH
Q 009617 192 ------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG 265 (531)
Q Consensus 192 ------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~ 265 (531)
++.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+++++.+.+.....++...++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~ 405 (1140)
T PRK06814 326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL 405 (1140)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 67778888899999999999999999999999999999999999999999999999998888643356777776
Q ss_pred HhHHHHH
Q 009617 266 LAAIPSI 272 (531)
Q Consensus 266 ~~~~~~~ 272 (531)
+.+++.+
T Consensus 406 ~~~~~~~ 412 (1140)
T PRK06814 406 FIALANL 412 (1140)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=107.81 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=98.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh-chHHHHHHHHHHHHhhhhhccchh
Q 009617 137 AENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGISSAIV 215 (531)
Q Consensus 137 s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~ 215 (531)
+.... +++.++..++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+..
T Consensus 255 ~~~~~--~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 332 (437)
T TIGR00792 255 DPELF--SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLV 332 (437)
T ss_pred ChHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 778888899999999999999999999999999998888887777665 456677778889999999888888
Q ss_pred hhhhhhcCC-------ccccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 216 PLYISEISP-------TEIRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 216 ~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
.++++|..+ ++.+|.+.++++....+|..+++.+.+.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 333 WALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988865 445699999999999999999999888765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=104.64 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=116.1
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhh-hccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-KFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 204 (531)
..|.+.++.+.++.+. +++.++..++...+..+.+++.| |++.++.+..+.++.+++.++.+++++++.+.+..++.
T Consensus 230 ~~p~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 307 (400)
T PRK11646 230 MLPIMVNDIAGSPSAV--KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF 307 (400)
T ss_pred hhhhhHHhhcCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4566556655566777 88888887776666666677665 46767777888888888888888888888888888889
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCc--h-hHHHHHHhHHHHHHHHHH
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL--W-WRTMFGLAAIPSILLALG 277 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~--g-wr~~f~~~~~~~~~~~~~ 277 (531)
|++.+...|...+++.|..|+++||+++++.+....+|..+||.++|.+.+... + -...++..++++++..+.
T Consensus 308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 999888888999999999999999999999999999999999999999875421 2 245555555555444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-09 Score=104.07 Aligned_cols=134 Identities=16% Similarity=0.047 Sum_probs=105.2
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-cchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHH
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 203 (531)
...|.+.++.|.+..+. +.+.+.+.++..+++++.|++.||+ +||+.+..+.++.+++.++..+.++..... .-++
T Consensus 218 ~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 294 (355)
T TIGR00896 218 GWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV 294 (355)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence 35566667789998888 9999999999999999999999999 566677788888888777777665433332 4568
Q ss_pred HHhhhhhccchhhhhhhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhH
Q 009617 204 AGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR 261 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr 261 (531)
.|++.+..++.....+.+..+ +++++...++.+....+|.+++|.+.+.+.+...+|.
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 899999888887777776555 4567888999888888999999999998876533343
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-09 Score=105.96 Aligned_cols=154 Identities=19% Similarity=0.089 Sum_probs=105.6
Q ss_pred hhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhh--------hhhhHH--HHHHHHHHHH-hc
Q 009617 125 GALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF--------QLDAVP--LAAGAFLCAT-AQ 192 (531)
Q Consensus 125 ~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~--------~~~~~~--~~~~~~~~~~-~~ 192 (531)
..+| ++.+++|.+..+. ++..++..++..++.++.|+++||+++|+.. ..+... .++..++... ..
T Consensus 282 ~~lp~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (465)
T TIGR00894 282 TYLPTFISWVLRVSGKEN--GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA 359 (465)
T ss_pred HHHHHHHHHHhCcChHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444 5567789999888 9999999999999999999999998765322 111111 1111111122 23
Q ss_pred hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCC--chhHHHHHHhHHH
Q 009617 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP--LWWRTMFGLAAIP 270 (531)
Q Consensus 193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--~gwr~~f~~~~~~ 270 (531)
+....++.-++.+.+.+...+.......|..|+ .+|.+.++.+....+|.+++|.+.+.+.+.. .+|+..|++.++.
T Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~ 438 (465)
T TIGR00894 360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV 438 (465)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence 344444445555555555555555556677766 6899999999999999999999998876532 4599999999888
Q ss_pred HHHHHHHhccc
Q 009617 271 SILLALGMGLS 281 (531)
Q Consensus 271 ~~~~~~~~~~~ 281 (531)
.++..+...++
T Consensus 439 ~~i~~i~~~~~ 449 (465)
T TIGR00894 439 NILCVIFYLIF 449 (465)
T ss_pred HHHHHHHeeee
Confidence 87766655554
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-09 Score=103.43 Aligned_cols=145 Identities=18% Similarity=0.219 Sum_probs=104.5
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHH-HHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHH---HHh-chHHHHHHHH
Q 009617 127 LEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMIIGR 201 (531)
Q Consensus 127 ~~~i~~~~~~s~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r 201 (531)
.+.+.+++|.+..++ +++.+... ++..++.+++|++.||+|+|+.+..+.++..+..+.. ++. ++.+.+++.-
T Consensus 233 ~~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 233 TTFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 456778899999888 98886654 5688999999999999999998877777666554433 343 4555555544
Q ss_pred ----HHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHH
Q 009617 202 ----VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG 277 (531)
Q Consensus 202 ----~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~ 277 (531)
++.|++.+...+....++.+.+|.++ .++++...++|.++++.++|.+.+. .||+..|.+.++++++..+.
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~-~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEA-YGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777554 4555555677776666678888755 89999999988888766555
Q ss_pred h
Q 009617 278 M 278 (531)
Q Consensus 278 ~ 278 (531)
.
T Consensus 386 ~ 386 (402)
T PRK11902 386 L 386 (402)
T ss_pred H
Confidence 4
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=109.20 Aligned_cols=150 Identities=13% Similarity=0.052 Sum_probs=109.0
Q ss_pred HHHHHHhHHHHHHHcCCChhh--------------HHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcc
Q 009617 358 INAVVYYSTSVFRSVGIESDV--------------AASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 423 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~g~~~~~--------------~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (531)
........|.+.++.|.+... .....+.+.||+|||+.+..+.++..++.++..... +
T Consensus 18 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~ 89 (485)
T TIGR00711 18 STIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP--------N 89 (485)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC--------C
Confidence 455566678888888876542 223334569999999999999888888877765431 2
Q ss_pred hhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHH
Q 009617 424 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLL 503 (531)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~ 503 (531)
....++..++.+.+. ....+....++.|.+|+++|+.+.++......+|..++|.+.+.+.+..||++.|++.+.+.++
T Consensus 90 ~~~l~~~~~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~ 168 (485)
T TIGR00711 90 LELMIIFRVIQGFGG-GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGII 168 (485)
T ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHH
Confidence 233333333333332 3345566678899999999999999999999999999999999999999999999988777766
Q ss_pred HHHHhheecccCC
Q 009617 504 AVLYIAVNVVETK 516 (531)
Q Consensus 504 ~~~~~~~~~~~~~ 516 (531)
..++..+..++++
T Consensus 169 ~~~~~~~~~~~~~ 181 (485)
T TIGR00711 169 VVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHcCCcc
Confidence 6665555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.3e-09 Score=100.22 Aligned_cols=159 Identities=18% Similarity=0.120 Sum_probs=115.5
Q ss_pred hhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh---chHH-----
Q 009617 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQ----- 195 (531)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~----- 195 (531)
...-..+-++-|++..+. .+......+...++.+++..+.||+|||+.++.++.+..+..+++... .+..
T Consensus 290 ~~Yst~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (485)
T KOG0569|consen 290 FFYSTSIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLS 367 (485)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 335566888889999888 888888888999999999999999999999999999998888776654 1111
Q ss_pred -HHHHHHHHHHhhhhh-ccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHH
Q 009617 196 -TMIIGRVLAGIGIGI-SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (531)
Q Consensus 196 -~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~ 273 (531)
..+++.++..++.+. .-|...-+.+|.+|++.|..++++......++.++-...-..+.+. .|= +.|++..+++++
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~-~g~-~~filF~i~~~~ 445 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV-IGP-YVFILFVIPLAI 445 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-hhhHHHHHHHHH
Confidence 122333333333222 3577788999999999999999998888877766655555444433 332 677777777755
Q ss_pred HHH-Hhcccccchh
Q 009617 274 LAL-GMGLSPESPR 286 (531)
Q Consensus 274 ~~~-~~~~~~e~~~ 286 (531)
..+ .+..+|||+.
T Consensus 446 ~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 446 FLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHhCcccCC
Confidence 554 5556899863
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=100.14 Aligned_cols=141 Identities=14% Similarity=0.036 Sum_probs=113.3
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Q 009617 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207 (531)
Q Consensus 128 ~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 207 (531)
+.+++.+|.++.+. |++.+.+.++..+++++.+++.||+++|+++..+. +.++..++.++.++++.+++.-++.|++
T Consensus 230 ~~~~~~lg~s~~~~--G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (393)
T PRK11195 230 AWAPVALGITLNQP--AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGAL 306 (393)
T ss_pred HHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45677889999988 99999999999999999999999999998888775 4455555566677777777888899999
Q ss_pred hhhccchhhhhhhhcCCccc-cchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHH
Q 009617 208 IGISSAIVPLYISEISPTEI-RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (531)
Q Consensus 208 ~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~ 271 (531)
.+...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+......+++.|...+++.
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLV 371 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88888888888888766554 69999999999999999999988877543344555555555554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-09 Score=102.85 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=106.2
Q ss_pred hHHHHHHhHHHHHHHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCc
Q 009617 357 GINAVVYYSTSVFRSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 422 (531)
Q Consensus 357 ~~~~~~~~~~~~~~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (531)
+........|.+.++.|.+.... ....+.++||+|||+.+..+.++..++.+++....
T Consensus 18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~-------- 89 (392)
T PRK10473 18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE-------- 89 (392)
T ss_pred HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC--------
Confidence 34445556777778888776532 22334469999999999998888887777765431
Q ss_pred chhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHH
Q 009617 423 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCL 502 (531)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~ 502 (531)
+....++...+.+.+.+ ...+....++.|.+|+++|+.+.++.+....++..++|.+.+.+.+..||+..+.+.+++.+
T Consensus 90 ~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~ 168 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGI 168 (392)
T ss_pred cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHH
Confidence 22222333333333222 23345556888999999999999999999999999999999988888899999988887777
Q ss_pred HHHHHhheecccCC
Q 009617 503 LAVLYIAVNVVETK 516 (531)
Q Consensus 503 ~~~~~~~~~~~~~~ 516 (531)
+..++.+...+|++
T Consensus 169 i~~~~~~~~~~~~~ 182 (392)
T PRK10473 169 LVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHcCCCC
Confidence 77666555556543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-09 Score=105.72 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=107.1
Q ss_pred hHHHHHHhHHHHHHHcCCChhh--------------HHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCc
Q 009617 357 GINAVVYYSTSVFRSVGIESDV--------------AASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 422 (531)
Q Consensus 357 ~~~~~~~~~~~~~~~~g~~~~~--------------~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (531)
-......-.|.+.+++|.+... .....+.++||+|||+.+..+.++..++.++.....
T Consensus 21 d~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~-------- 92 (495)
T PRK14995 21 DATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP-------- 92 (495)
T ss_pred HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 3445555677888888776542 223334569999999999999999988888877641
Q ss_pred chhHHHHHHHHHHHHHhcCcccccccccccc-cChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHH
Q 009617 423 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEI-FASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 501 (531)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 501 (531)
+.+..++.-.+.+.+.+. ..+.....+.+. .|+++|+.++|+......+|..++|.+.+.+.+..||++.|++...++
T Consensus 93 ~~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~ 171 (495)
T PRK14995 93 TASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIV 171 (495)
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Confidence 233344443444444432 333333344444 478899999999999999999999999999999999999999988777
Q ss_pred HHHHHHhheecccC
Q 009617 502 LLAVLYIAVNVVET 515 (531)
Q Consensus 502 ~~~~~~~~~~~~~~ 515 (531)
++..++.+++.|+.
T Consensus 172 ~~~~~l~~~~l~~~ 185 (495)
T PRK14995 172 LVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHHHhCCCC
Confidence 77766666656654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-09 Score=90.76 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
.|.+ .++|..+....+.....+ ....++.||+|.... +.+.+....-.++.+++.|.++||+|++...+.+..+.
T Consensus 266 fw~~-~iicv~yyva~fPFi~lg--~~fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 266 FWVL-VIICVLYYVAWFPFITLG--PMFFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL 340 (459)
T ss_pred HHHH-HHHHHHHHHHHHHHhhhh--HHHHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence 3444 444555544444333332 335789999999988 98988888888999999999999999998887665554
Q ss_pred HHH-HHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch-
Q 009617 182 AAG-AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW- 259 (531)
Q Consensus 182 ~~~-~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g- 259 (531)
.+. -....+ +++.=+++..++|+..+.........++-..|.++.|++.|..+...++|..+.|++++++.+...+
T Consensus 341 tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y 418 (459)
T KOG4686|consen 341 TLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY 418 (459)
T ss_pred HHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence 443 333333 3334456778889887766555667788888999999999999999999999999999999875333
Q ss_pred -hHHHH-HHhHHHHHHHHHHhc
Q 009617 260 -WRTMF-GLAAIPSILLALGMG 279 (531)
Q Consensus 260 -wr~~f-~~~~~~~~~~~~~~~ 279 (531)
|--+| .+.+.+++....+.+
T Consensus 419 ~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 419 DNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 33333 333444444444443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.6e-09 Score=101.25 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=92.2
Q ss_pred HHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHH
Q 009617 383 LVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKA 462 (531)
Q Consensus 383 ~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 462 (531)
.+.++||+|||+++..+.++..++.++..... +....++.-++.+.+.+ ...+....++.|.+|+++++.+
T Consensus 71 ~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--------~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~ 141 (413)
T PRK15403 71 LGPLSDRIGRRPVLITGALIFTLACAATLFTT--------SMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKL 141 (413)
T ss_pred hhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHH
Confidence 34569999999999998888887777665531 22333333344433332 2233445578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccCC
Q 009617 463 VALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETK 516 (531)
Q Consensus 463 ~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (531)
+++.+....++..++|.+.+.+.+..||++.|.+.+++.++..+..++..||++
T Consensus 142 ~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 142 MAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999988889999999988877777665555566653
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-08 Score=96.14 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=122.5
Q ss_pred hHhHHhhhhhHHHHHHhcC-CCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh-chH
Q 009617 117 GYHLGVVNGALEYLAKDLG-IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSV 194 (531)
Q Consensus 117 ~~~~~~~~~~~~~i~~~~~-~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~ 194 (531)
+.....+....+...++.| .+.... +.+.++..+.-.+.-...+++..|+|.|+++.++.+.+++=..+.++. ++.
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~ 297 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPW 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3333344444555566666 666666 777777778888888899999999999999999999999988888887 555
Q ss_pred HHHHHH----HHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHH-HHHHHHHHHHHhhcccCCCC-----chhHHHH
Q 009617 195 QTMIIG----RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQL-FICVGILAALVAGLPLAGNP-----LWWRTMF 264 (531)
Q Consensus 195 ~~l~~~----r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~-----~gwr~~f 264 (531)
+...+. ..+.|+..+..+..+..++.+..|++.|+++.+++.+ ..++|..+|.+++|.+.+.. ..|...+
T Consensus 298 ~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~ 377 (400)
T PF03825_consen 298 PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVF 377 (400)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 444333 4569999999999999999999999999999999876 47899999999999998641 2355666
Q ss_pred HHhHHHHHHHHHHh
Q 009617 265 GLAAIPSILLALGM 278 (531)
Q Consensus 265 ~~~~~~~~~~~~~~ 278 (531)
.+.+++.++..+++
T Consensus 378 ~v~a~~~~~~~~~f 391 (400)
T PF03825_consen 378 LVFAVMALVILVLF 391 (400)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666654444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=103.11 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=120.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhh
Q 009617 138 ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPL 217 (531)
Q Consensus 138 ~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 217 (531)
+..+ |.+.++..+.-++.-.+..++.+|+|.|+.++++.+++++=.++++++++.+.+.+.+.+.|+-.+........
T Consensus 258 ~~~~--G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 258 NQMY--GYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH--hHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCccccchhHHH-HHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc-cccc
Q 009617 218 YISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPES 284 (531)
Q Consensus 218 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~ 284 (531)
|+++.+|++-.++...+ .+...++|.++.+.++|.+.+. .|.+.+|++++.+.+...+...+ ++++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-IGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-cCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99999999877777766 4677889999999999999865 79999999999887665554443 4433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.3e-09 Score=99.86 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=94.7
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHH-HHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh-----------c
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----------Q 192 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----------~ 192 (531)
...|...+++|.+..+. +.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+. +
T Consensus 230 ~~~~~~l~~~g~~~~~~--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (356)
T TIGR00901 230 VLTTLFLLDMGFSKEEI--ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFP 307 (356)
T ss_pred HHHHHHHHHcCCCHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 34555555699999888 88887765 5778999999999999999999988888888776655543 4
Q ss_pred hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHH
Q 009617 193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFIC 240 (531)
Q Consensus 193 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 240 (531)
+.+.++.+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 557778888999999999999999999999999999999999887654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=96.29 Aligned_cols=157 Identities=28% Similarity=0.445 Sum_probs=127.6
Q ss_pred HhhHhHHhhhhhHHHHHHhcCCCc--chhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhc
Q 009617 115 LFGYHLGVVNGALEYLAKDLGIAE--NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ 192 (531)
Q Consensus 115 ~~~~~~~~~~~~~~~i~~~~~~s~--~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 192 (531)
...++.....+..+.+..+++.+. ... ++..+.+.++..+++++.|.++||+|||+.+..+.....++.+++++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T COG0477 13 LLGLDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP 90 (338)
T ss_pred HHHHhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence 333556666678888888888776 367 9999999999999999999999999999888888877666677777777
Q ss_pred h--HHHHHHHHHHHHhhhhhccchhhhhhhhcCCc-cccchhHHHHHH-HHHHHHHHHHHhhcccCCC-CchhHHHHHHh
Q 009617 193 S--VQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQL-FICVGILAALVAGLPLAGN-PLWWRTMFGLA 267 (531)
Q Consensus 193 ~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~-~~gwr~~f~~~ 267 (531)
+ .+.+++.|+++|++.+...+...+++.|++++ ++|+...+.... ...+|..+++.+++.+... ..+||+.|.+.
T Consensus 91 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (338)
T COG0477 91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA 170 (338)
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 6 89999999999999999999999999999998 678999998888 5788888888777666532 24799977666
Q ss_pred HHHHHH
Q 009617 268 AIPSIL 273 (531)
Q Consensus 268 ~~~~~~ 273 (531)
......
T Consensus 171 ~~~~~~ 176 (338)
T COG0477 171 ALLGLL 176 (338)
T ss_pred HHHHHH
Confidence 655543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-09 Score=85.06 Aligned_cols=128 Identities=19% Similarity=0.137 Sum_probs=94.7
Q ss_pred hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChh
Q 009617 378 VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR 457 (531)
Q Consensus 378 ~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 457 (531)
......+.+.||+|||+.+..+.....++.+.+.... +.+...+...+.+.+.+ ...+....+..|.+|++
T Consensus 13 ~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--------NITVLIIARFLQGFGAA-FALVAGAALIADIYPPE 83 (141)
T ss_pred HHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHCChh
Confidence 4456667788999999999888877777776665421 22223333333333333 23455666889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheeccc
Q 009617 458 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVE 514 (531)
Q Consensus 458 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (531)
+|+++.++.+....++..++|.+.+.+.+..+++..+.+.+.+.++..+..+...+|
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999988888888888887777777666655554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=97.73 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=108.0
Q ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHHH--------------HHHHHhhhcCccHHHHHHhHHH
Q 009617 338 RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAAS--------------ALVGAANVFGRKNLLTFSFTGM 403 (531)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------~~~~~~~~~gr~~~~~~~~~~~ 403 (531)
+.++.+.+.........+ .........|.+.++.+.+....+. ..+.++||+|||+.+..+..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~-~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~ 83 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQM-AQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence 344444444444433222 2223333456677778887763332 2344699999999999888877
Q ss_pred HHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 009617 404 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLS 483 (531)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 483 (531)
.++.+...... +.+..++...+.+.+.+ ...+....+..|.++.++++.+.+..+....++..++|.+.+.
T Consensus 84 ~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 154 (394)
T PRK11652 84 ILGTLVALFAH--------SLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGL 154 (394)
T ss_pred HHHHHHHHHHc--------cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665421 22223333333333322 2233444567788888899999999999999999999999999
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHhheecccCC
Q 009617 484 VVNKFGISTVYLGFATVCLLAVLYIAVNVVETK 516 (531)
Q Consensus 484 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (531)
+.+..||+..|.+.+++.++..++..++.||++
T Consensus 155 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 155 LTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 998889999998887766655554444556543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-08 Score=98.13 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=94.9
Q ss_pred HHHHHhHHHH-HHHcCCChhhH--------------HHHHHHHhhhc-CccHHHHHHhHHHHHHHHHHHHHhhcccccCc
Q 009617 359 NAVVYYSTSV-FRSVGIESDVA--------------ASALVGAANVF-GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 422 (531)
Q Consensus 359 ~~~~~~~~~~-~~~~g~~~~~~--------------~~~~~~~~~~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (531)
+....+.+.+ .+..|++.... ....+.++||+ |||+.+.++.++..++.+++.... .
T Consensus 26 Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-------~ 98 (493)
T PRK15462 26 YGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-------I 98 (493)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-------c
Confidence 3344444444 44567776532 22334569999 999999999998888876654310 0
Q ss_pred chhHHHHHHHHHHHHHhcCcccccccccccccChh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHH
Q 009617 423 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR--IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATV 500 (531)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~ 500 (531)
......+...+...+.+ ...+...+++.|.+|++ +|+++.++.+...++|++++|.+.+.+.+..||+..|.+.++.
T Consensus 99 ~~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig 177 (493)
T PRK15462 99 HPSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG 177 (493)
T ss_pred chhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 11112222222323322 23355556889999975 6999999999999999999999999999999999999886655
Q ss_pred HHHHHHHh
Q 009617 501 CLLAVLYI 508 (531)
Q Consensus 501 ~~~~~~~~ 508 (531)
.+++.+..
T Consensus 178 m~l~li~~ 185 (493)
T PRK15462 178 MIAGLVIF 185 (493)
T ss_pred HHHHHHHH
Confidence 55444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-09 Score=101.30 Aligned_cols=123 Identities=28% Similarity=0.350 Sum_probs=105.2
Q ss_pred hhhhHHH-HHHhcCCC-cchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh---chHHHH
Q 009617 123 VNGALEY-LAKDLGIA-ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTM 197 (531)
Q Consensus 123 ~~~~~~~-i~~~~~~s-~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l 197 (531)
.....|. +.+++|.+ ..+. ++..++..++..++.++.|+++||+|+|+..........+..+...+. ++....
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQA--GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWL 302 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHH
T ss_pred hhcccchhhhhccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445665 48899999 6777 999999999999999999999999999888877777777766666554 345777
Q ss_pred HHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHH
Q 009617 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (531)
Q Consensus 198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 247 (531)
++.-++.|++.+...+....++.|.+|+++||++.++.+....+|..+||
T Consensus 303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 77889999999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=100.03 Aligned_cols=156 Identities=14% Similarity=0.084 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHH--------------HHHHHHhhh-cCccHHHHHHhHHHHHH
Q 009617 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA--------------SALVGAANV-FGRKNLLTFSFTGMAAS 406 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~-~gr~~~~~~~~~~~~~~ 406 (531)
.++..+...+...+..|....+...++.++.|++..... ...+.++|| +|||+++..+.++..++
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g 94 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG 94 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence 333444444444444444555555566666777765321 223446999 99999999999999999
Q ss_pred HHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChh--hhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 009617 407 MLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR--IRAKAVALSLGMHWISNFVIGLYFLSV 484 (531)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~g~~ 484 (531)
.+++.+... ......+...+.+.+. ....|...+++.|.+|++ +|+.++++.+...++|.+++|.+.|.+
T Consensus 95 ~~~~~~~~~-------~~~ll~~~~~l~~ig~-g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 95 YFMTGMSLL-------KPDLIFIALGTIAVGN-GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred HHHHHHhcc-------chhHHHHHHHHHHhcc-ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 888776411 1111222333333322 334556667899999877 457789999999999999999999999
Q ss_pred HHhhccchhhHHHHHHHHHHH
Q 009617 485 VNKFGISTVYLGFATVCLLAV 505 (531)
Q Consensus 485 ~~~~g~~~~~~~~~~~~~~~~ 505 (531)
.++.||++.|.+.++..+++.
T Consensus 167 ~~~~gw~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 167 ADKFGYSVTYNLCGAGLIIAL 187 (489)
T ss_pred HHhhChHHHHHHHHHHHHHHH
Confidence 999999999988654333333
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-07 Score=86.20 Aligned_cols=107 Identities=14% Similarity=0.004 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCcc
Q 009617 147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226 (531)
Q Consensus 147 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 226 (531)
.++.+..+.++.++.+.+.|+.|+|+.++++...+....+..-+ +|-+-+++.-.+.|+|.+..+.....+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77778888999999999999999999999999999988877766 45666788999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 227 IRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 227 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
.+.+..++..+....+.++|.++-..+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~ 162 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYF 162 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence 9999999988888888888877655543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-08 Score=94.74 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=101.6
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccc---hhhhh-hhhHHHHHHHHHHHHhchHHHHHHH
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR---TRTFQ-LDAVPLAAGAFLCATAQSVQTMIIG 200 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr---r~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (531)
..+|.+.++.|.+.. . +...++..+...++ .++++||..| |+... ...++.++...+.++..+....++.
T Consensus 213 ~wlp~~L~~~g~s~~-~--~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-A--GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAF 286 (368)
T ss_pred HHHHHHHHHCCCChH-H--HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 355666577777653 4 66666666555555 4677777654 34333 2444444544455555555555555
Q ss_pred HHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc
Q 009617 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (531)
Q Consensus 201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~ 280 (531)
-++.|++....++...++.+|.+|++.|+++.|+.+....+|.+++|.+.+.+.. +-+..|.+.+++.++..+..++
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~i~~~~~~~ 363 (368)
T TIGR00903 287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---SAEAYFTFLAILITIAFAIALL 363 (368)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777788899999999999999999999999999888888876652 5677777777777665555444
Q ss_pred ccc
Q 009617 281 SPE 283 (531)
Q Consensus 281 ~~e 283 (531)
+++
T Consensus 364 ~~~ 366 (368)
T TIGR00903 364 LPN 366 (368)
T ss_pred CCC
Confidence 344
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=99.36 Aligned_cols=134 Identities=16% Similarity=-0.061 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH-Hh-----chHHHHHHHHHHHHhhhhhccchhhhhhh
Q 009617 147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-TA-----QSVQTMIIGRVLAGIGIGISSAIVPLYIS 220 (531)
Q Consensus 147 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 220 (531)
..+..+...+..+++|+++||+|+|+++.++.++..++..... .. .+++.+.+..+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 4445677788999999999999999999988887777664322 22 24566666555555555555556677777
Q ss_pred hcCCc---------------------cccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc
Q 009617 221 EISPT---------------------EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 221 ~~~~~---------------------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
+++|+ ++-|.+.|+..+...+|..+.|.+-+...+...++...|++..+..+++.++.+
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 77764 145788888888999988888866555554446688888888887776666554
Q ss_pred c
Q 009617 280 L 280 (531)
Q Consensus 280 ~ 280 (531)
.
T Consensus 452 ~ 452 (462)
T PRK15034 452 L 452 (462)
T ss_pred H
Confidence 4
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-08 Score=97.95 Aligned_cols=143 Identities=13% Similarity=0.018 Sum_probs=112.0
Q ss_pred HHHH-HHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 127 LEYL-AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 127 ~~~i-~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
.+++ ++.+|.++.+. ++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.. .++.-++.|
T Consensus 282 ~~~l~~~~~g~s~~~a--g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g 358 (438)
T PRK10133 282 IRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCS 358 (438)
T ss_pred HHHHhhhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence 3454 45789999999 9999999999999999999999999999999988888877777666666543 345667899
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch-hHHHHHHhHHHHHHHH
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLA 275 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g-wr~~f~~~~~~~~~~~ 275 (531)
++.+..+|...+...+.++++ .+.+.++... ..+|..++|.+.+.+.+. .| -|..|++..+..+...
T Consensus 359 lg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~-~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDA-AGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHH
Confidence 999999999999999998764 5677777764 446777777777777754 55 7788876555544433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.9e-08 Score=93.89 Aligned_cols=123 Identities=10% Similarity=0.083 Sum_probs=89.5
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH---H-hchHHHHHHHHHH
Q 009617 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---T-AQSVQTMIIGRVL 203 (531)
Q Consensus 128 ~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l 203 (531)
+.+.+++|.+..+. ++..+...++..++.++.|++.||+|||+.+..+.++..+..+... . ..+++.+.++-.+
T Consensus 219 ~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (377)
T PRK11102 219 FVYIELNGVSPQNF--GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAA 296 (377)
T ss_pred HHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34667789998888 9999999999999999999999999999999888776544333222 2 2244555555555
Q ss_pred HHhhhhhccchhhhhhhhcCCccccchhHHHHHHH-HHHHHHHHHHhhccc
Q 009617 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPL 253 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~~l 253 (531)
.+.+.+........++.|..| ++++++.++.... ..+|..+++++++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~ 346 (377)
T PRK11102 297 FVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAP 346 (377)
T ss_pred HHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555555556666677788776 6789999887654 557778888776543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-08 Score=97.41 Aligned_cols=135 Identities=24% Similarity=0.253 Sum_probs=111.4
Q ss_pred hHhHHhhhhhHHHHHHh-cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhc--h
Q 009617 117 GYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--S 193 (531)
Q Consensus 117 ~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~ 193 (531)
.......+...++..++ +|.+ ... +.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGS 314 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhh
Confidence 33344444455655555 4554 556 8888899999999999999999999999999999999999999988886 9
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhhhcCCcc-------ccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
.+.+++.-++.|++.+...+...++++|..+.+ +.|...+.+.....+|..+++.+.+.+.
T Consensus 315 ~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 315 PWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred HHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988732 2388888888888888888888777653
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-07 Score=92.55 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=124.6
Q ss_pred hhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh-ccchhhhhhhhHHHHHHHHHHHHhch--------H
Q 009617 124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQS--------V 194 (531)
Q Consensus 124 ~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~ 194 (531)
..+..++.+.+|.++... ..+...+....-+.++++|+++|+ +|+++.+.++.++..++.++.+++.. .
T Consensus 8 aiLvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 345667778899998888 888888888888999999999997 59999999999999999988876421 2
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCCccc---cchhHHHHHHHHHHHHHHHHHhhcccCCC------CchhHHHHH
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGN------PLWWRTMFG 265 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------~~gwr~~f~ 265 (531)
...+++-.+..+|.|+.-+...+...|.+++++ |...+.++..+.++|.++++.+...+.+. ..+|...|.
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 335677788889999999999999999997643 57788889999999999998888776522 247999999
Q ss_pred HhHHHHHHHHHHhc
Q 009617 266 LAAIPSILLALGMG 279 (531)
Q Consensus 266 ~~~~~~~~~~~~~~ 279 (531)
+.++..++.++...
T Consensus 166 i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 166 VPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888876655543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-09 Score=100.13 Aligned_cols=139 Identities=12% Similarity=0.065 Sum_probs=111.5
Q ss_pred hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChh
Q 009617 378 VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR 457 (531)
Q Consensus 378 ~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 457 (531)
..+.+.+++.||++|++++.++..+-.++.+..++.. ..+..++.-.+.+.+-. .+.|+..++++|.+|..
T Consensus 83 i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~--------~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~ 153 (493)
T KOG1330|consen 83 IASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN--------HFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDD 153 (493)
T ss_pred HHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccchh-hhcccchhHhhhcCcch
Confidence 5566778889999999999999998888888887752 23334444444444443 46778888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhHHHHHHHHHHHHHhheecccCCCCCHHHHHH
Q 009617 458 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIER 525 (531)
Q Consensus 458 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (531)
+|++++++.+....+|..+|-.+.+.+.+..+ |++.|...+++.++..++..++.+|..++..++.++
T Consensus 154 ~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 154 KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 99999999999999999999888888877777 999999999999999999888888877655444433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-08 Score=98.14 Aligned_cols=127 Identities=14% Similarity=0.112 Sum_probs=99.2
Q ss_pred hHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhc--hHHHHHHHHH
Q 009617 126 ALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRV 202 (531)
Q Consensus 126 ~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~ 202 (531)
..|+ +++.+|.+.... ++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..+
T Consensus 250 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA 327 (448)
T ss_pred hheeeEeeecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 3443 344567655433 4444545677888999999999999999999999999888887776654 5677777788
Q ss_pred HHHhhhhhccchhhhhhhhcCCcc-------ccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 203 LAGIGIGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 203 l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
+.|+|.+...+...++++|..+.+ ++|...+.++....+|..+|+.+.+.+.
T Consensus 328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888754 3488899999999999999888877653
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=94.74 Aligned_cols=134 Identities=19% Similarity=0.111 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHhHHh----hhhh-ccchhhh--hhhhHHHHHHHHHHHH---------hchHHHHHHHHHHHHhh
Q 009617 144 GWIVSSLLAGATVGSFTGGS----LADK-FGRTRTF--QLDAVPLAAGAFLCAT---------AQSVQTMIIGRVLAGIG 207 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~----l~dr-~Grr~~~--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~ 207 (531)
+++.++..+...+.+++..+ +.+| .+.+... .+|+++.+++.+..++ ..|++++++..++.|+|
T Consensus 315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g 394 (475)
T TIGR00924 315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG 394 (475)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence 78888888888888877554 4444 3334444 7788888888877765 46899999999999999
Q ss_pred hhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHh
Q 009617 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 208 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~ 278 (531)
+....|....++++..|++.||+++|++.....+|..+++.+....... .+|.+.|...++..++..++.
T Consensus 395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP-QGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888776533 578888888887776655544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-07 Score=91.21 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=93.9
Q ss_pred HHHHHHhHH-HHHHHcCCChhhH--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCc
Q 009617 358 INAVVYYST-SVFRSVGIESDVA--------------ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 422 (531)
Q Consensus 358 ~~~~~~~~~-~~~~~~g~~~~~~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (531)
......+.| ++.++.|++.... ....+.++||+|||+.+..+.++..++.+++.+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~------- 89 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ------- 89 (366)
T ss_pred HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 344555566 4667788877632 333344699999999999999888888877765410
Q ss_pred chhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh----------hccch
Q 009617 423 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK----------FGIST 492 (531)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~----------~g~~~ 492 (531)
+.+..++..++.+.+ . +..+....++.|.+|+++|+.+.++......+|..+++.+.+.+... .+|++
T Consensus 90 ~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~ 167 (366)
T TIGR00886 90 SYSVLLLLRLFIGIA-G-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW 167 (366)
T ss_pred hHHHHHHHHHHHHHh-c-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 112222333333333 2 22333455888999999999999999988888888888877776653 36888
Q ss_pred hh-HHHHHHHHHHHHHhheecc
Q 009617 493 VY-LGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 493 ~~-~~~~~~~~~~~~~~~~~~~ 513 (531)
.+ ...+.+..+..++.+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~ 189 (366)
T TIGR00886 168 AFVIVPAGILLLPALLIFFVGA 189 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhcc
Confidence 87 4334444444444333333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=94.79 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=106.9
Q ss_pred HHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhh----hccchhhhhh-hhHHHH
Q 009617 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTFQL-DAVPLA 182 (531)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~~-~~~~~~ 182 (531)
.++...+...+.+..--..+++..+++|++..-. +.+--+.-+...+.|++.|..+| ||||||.++. +.+...
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~ 113 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA 113 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence 3344444444545444456677789999998777 88888888888899999999999 5999887764 455556
Q ss_pred HHHHHHHHhchHH-----------------HHHHHHHHHHhhhhhccchhhhhhhhcCCccccch-hHHHHHHHHHHHHH
Q 009617 183 AGAFLCATAQSVQ-----------------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA-LGSVNQLFICVGIL 244 (531)
Q Consensus 183 ~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~ 244 (531)
++.++..++.++. .++++--+.=++.-.....+-+++.|...++++.+ +.+++.....+|..
T Consensus 114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv 193 (498)
T KOG0637|consen 114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV 193 (498)
T ss_pred HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence 6666777764433 24444445556666778889999999998877766 99999999999999
Q ss_pred HHHHhhcccC
Q 009617 245 AALVAGLPLA 254 (531)
Q Consensus 245 ~g~~~~~~l~ 254 (531)
+|..+++.+.
T Consensus 194 LGY~~g~y~~ 203 (498)
T KOG0637|consen 194 LGYALGSYLG 203 (498)
T ss_pred eeeecccccC
Confidence 9988887543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=94.78 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=92.5
Q ss_pred HHHHHHhHHHHHHHcCCChhhH--------------HHHHHHHhhh-cCccHHHHHHhHHHHHHHHHHHHHhhcccccCc
Q 009617 358 INAVVYYSTSVFRSVGIESDVA--------------ASALVGAANV-FGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 422 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~g~~~~~~--------------~~~~~~~~~~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (531)
+....+...++.++.|++.... ....+.++|| +|||+.+..+.++..++.+++.+.. .
T Consensus 38 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-------~ 110 (500)
T PRK09584 38 YGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-------H 110 (500)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-------c
Confidence 3333434444456777765421 1233556899 5999999999988888877766531 0
Q ss_pred chhHHHHHHHHHHHHHhcCcccccccccccccChh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHH
Q 009617 423 SGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR--IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATV 500 (531)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~ 500 (531)
......+...+.+.+.+ ...+...+++.|.+|++ .++.+.++.+...++|.+++|.+.|.+.+..||+..|.+.++.
T Consensus 111 ~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~ 189 (500)
T PRK09584 111 DAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189 (500)
T ss_pred cHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 11222233333333333 23455556888998754 3456788999999999999999999999999999999887654
Q ss_pred HHHHH
Q 009617 501 CLLAV 505 (531)
Q Consensus 501 ~~~~~ 505 (531)
.+++.
T Consensus 190 ~~i~~ 194 (500)
T PRK09584 190 MLITV 194 (500)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-07 Score=91.99 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=98.4
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHH---HH--hchHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---AT--AQSVQTMIIG 200 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~--~~~~~~l~~~ 200 (531)
..|.+.+++|.+..+. ++....+.++..++.++.+++.||+|+|+.+....++.+++.+.. .. .++.+.+++.
T Consensus 225 ~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (401)
T PRK11043 225 GSPFILEQMGYSPADI--GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP 302 (401)
T ss_pred HhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4566667889998888 888888888999999999999999999987766655555443332 22 3455556666
Q ss_pred HHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
..+.|++.+..++.......|..| ++|+++.++++.....+...++.+.+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 788899989888888888878776 469999999998877777778777777764
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=95.27 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=89.7
Q ss_pred HHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhh
Q 009617 379 AASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRI 458 (531)
Q Consensus 379 ~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 458 (531)
......-+..++|+.+++.+++.+..+=++.+.... ++|..+..-++-+......+..+. +|++...|++.
T Consensus 422 ~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--------n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l 492 (618)
T KOG3762|consen 422 FYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--------NPWMVLPIEILQGITHALIWAAII-SYASHVAPPGL 492 (618)
T ss_pred HHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--------CchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcc
Confidence 344445578999999999988877777776665542 344444444555555555555444 49999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHh
Q 009617 459 RAKAVALSLGMH-WISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYI 508 (531)
Q Consensus 459 ~~~~~g~~~~~~-~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 508 (531)
++++.|+..... .+|-.+|.+++|.+.+..|.+..|.++++.|++..++.
T Consensus 493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 999999997765 68889999999999999998888888887777665543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.5e-07 Score=82.34 Aligned_cols=170 Identities=16% Similarity=0.080 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-cchhhhhhhhHH
Q 009617 102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVP 180 (531)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~ 180 (531)
.|.+.....+-++.. .+.-.-+|.+-.|-|+|..+. |++.++..+.....++....+++|. .+|+..+....+
T Consensus 210 aW~vtLfmGlqS~~~----Y~~~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~ 283 (395)
T COG2807 210 AWQVTLFMGLQSLLY----YIVIGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL 283 (395)
T ss_pred hHHHHHHHHhhHHHH----HHHHHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 454444444433333 233347899999999999999 9999999999999999999999975 678888888888
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCcccc-chhHHHHHHHHHHHHHHHHHhhcccCCCCch
Q 009617 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGLPLAGNPLW 259 (531)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g 259 (531)
+.++...+.+.+.-..++. -+++|+|.|..++.+...+.+..+..+. ++-.+..+..+.+=..+||.+.|++-+...+
T Consensus 284 ~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs 362 (395)
T COG2807 284 MLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS 362 (395)
T ss_pred HHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence 8888888888776554444 4999999999999999999998876543 4444555544444467899999999887789
Q ss_pred hHHHHHHhHHHHHHHHHHh
Q 009617 260 WRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 260 wr~~f~~~~~~~~~~~~~~ 278 (531)
|+..++......+...+.-
T Consensus 363 w~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 363 WSAPLVLLALATLLMLIFG 381 (395)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999888877776655443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-08 Score=69.02 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=75.3
Q ss_pred HhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchH
Q 009617 115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV 194 (531)
Q Consensus 115 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 194 (531)
..+..+..+.|++|.|++|.++|.++. |++.+..++||.+|.+...++.++..+++.+..++++..+..+.+++.++.
T Consensus 3 amGigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 3 AMGIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred chhhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 346778899999999999999999999 999999999999999999999999989999999999999999999999887
Q ss_pred HHH
Q 009617 195 QTM 197 (531)
Q Consensus 195 ~~l 197 (531)
+.+
T Consensus 81 ~~w 83 (85)
T PF06779_consen 81 WLW 83 (85)
T ss_pred HHH
Confidence 754
|
Note that many members are hypothetical proteins. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=94.10 Aligned_cols=128 Identities=12% Similarity=0.013 Sum_probs=95.8
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHH-----hchHHHHHH
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-----AQSVQTMII 199 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~ 199 (531)
...+++.++..-+.... +++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+ ..+.+.+++
T Consensus 252 ~~~~y~~~y~~~~~~~~--~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 329 (473)
T PRK10429 252 GFAIYYFTYVIGDADLF--PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVI 329 (473)
T ss_pred hheeeEEEEECCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHH
Confidence 34444544443344445 77777777888999999999999999999999888877766655432 345666777
Q ss_pred HHHHHHhhhhhccchhhhhhhhcCCc-------cccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 200 GRVLAGIGIGISSAIVPLYISEISPT-------EIRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 200 ~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
.-++.|++.+...+...++++|..+. ++.|..++......-+|..+++.+.+++.
T Consensus 330 ~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 330 AGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999998888899999998652 22366888888888888888888777654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-07 Score=96.07 Aligned_cols=170 Identities=14% Similarity=0.001 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChh--------------hHHHHHHHHhhhcCccHHHHHHhHHHHH
Q 009617 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--------------VAASALVGAANVFGRKNLLTFSFTGMAA 405 (531)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~~~~~~~gr~~~~~~~~~~~~~ 405 (531)
++.+++...+..+.+...........+.+.++++++.. ......+++.||.+|++.+.++.+++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence 33333333333333333333444445666667776554 3455566679999999999999999999
Q ss_pred HHHHHHHHhhcccc-----------------------c-----------------C--c-chhHHHHHHHHHHHHHhcCc
Q 009617 406 SMLLLSLSFTWKVL-----------------------A-----------------P--Y-SGTLAVLGTVLYVLSFSLGA 442 (531)
Q Consensus 406 ~~~~~~~~~~~~~~-----------------------~-----------------~--~-~~~~~~~~~~~~~~~~~~~~ 442 (531)
+.+++++....... . . . .....+++-++.+.+ ....
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG-~~~~ 189 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG-ATPI 189 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc-CCcc
Confidence 99988765321100 0 0 0 011122233333332 2345
Q ss_pred ccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh----------------------ccchhhHHHHHH
Q 009617 443 GPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKF----------------------GISTVYLGFATV 500 (531)
Q Consensus 443 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~----------------------g~~~~~~~~~~~ 500 (531)
.+...+++.|.+|+++|+.+.|+.+....+|..+++.+++.+.+.. +|+..|++.+++
T Consensus 190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l 269 (633)
T TIGR00805 190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV 269 (633)
T ss_pred hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 5677779999999999999999999999999999999999887642 145567777766
Q ss_pred HHHHHHHhhe
Q 009617 501 CLLAVLYIAV 510 (531)
Q Consensus 501 ~~~~~~~~~~ 510 (531)
.++.++..++
T Consensus 270 ~~l~~v~l~~ 279 (633)
T TIGR00805 270 ALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHh
Confidence 6665554443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=94.43 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=93.4
Q ss_pred HHHHHHHcCCChh-------------hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHH
Q 009617 365 STSVFRSVGIESD-------------VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGT 431 (531)
Q Consensus 365 ~~~~~~~~g~~~~-------------~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (531)
.+++..+.|-+.. ....+.+.++|.+|||+.++.+.++..++.++.+.. ++....+.+.
T Consensus 67 l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--------~~~~~~iag~ 138 (599)
T PF06609_consen 67 LPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--------QNMNTFIAGM 138 (599)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC--------CcHHHHHHHH
Confidence 4556666655443 334445667999999999999999999999988653 2334455555
Q ss_pred HHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhhe
Q 009617 432 VLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 510 (531)
.+.+.+.+ ...+....++|..|.+.|..+.++.....-....++|.+...+..+.+|++.|++.++...++.++.++
T Consensus 139 ~l~GvgaG--~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 139 VLYGVGAG--VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHHHHhhH--HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55555433 333444568999999999888777766554555566777666666678999999888877776655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00016 Score=71.16 Aligned_cols=127 Identities=10% Similarity=0.026 Sum_probs=94.9
Q ss_pred hHHHHHHhcCCC-----cchhHHHHHHHHHHHHHHHH-HHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh----c---
Q 009617 126 ALEYLAKDLGIA-----ENTVLQGWIVSSLLAGATVG-SFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA----Q--- 192 (531)
Q Consensus 126 ~~~~i~~~~~~s-----~~~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~--- 192 (531)
++-.+++.+.++ .+.+ .++-+...+...+. .++.+++++|++|++++-.....+....+++++. +
T Consensus 25 iLR~lKD~lvv~~~~~gae~i--~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~ 102 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEII--PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLL 102 (472)
T ss_pred HHHhhhhheeecccCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 555677777663 2456 78888777766666 8889999999999999987777777766666654 1
Q ss_pred ------------------------hHHHHHHHHHHHHhhhhhccc-hhhhhhhhcCCccccchhHHHHHHHHHHHHHHHH
Q 009617 193 ------------------------SVQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAAL 247 (531)
Q Consensus 193 ------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 247 (531)
+.|...+..+...+-.....+ ....+++|.++.+|-.|..+++..+.++|.++++
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg 182 (472)
T TIGR00769 103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSG 182 (472)
T ss_pred CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333444455555555555 6788999999999999999999999999999999
Q ss_pred HhhcccC
Q 009617 248 VAGLPLA 254 (531)
Q Consensus 248 ~~~~~l~ 254 (531)
.+..++.
T Consensus 183 ~~~~~~~ 189 (472)
T TIGR00769 183 RTIKYFS 189 (472)
T ss_pred HHHHHHH
Confidence 8877765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-07 Score=90.66 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHH--hchHHHHHHHHHHHHhhhhhccchhhhhhhh
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT--AQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 221 (531)
+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+ .++.+.+++..++.|++.+...+...++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566667777888899999999999999998888766654443333 3567777888899999999999999999998
Q ss_pred cCCc-------cccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 222 ISPT-------EIRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 222 ~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
..+. +..|...+.......+|..+|+.+++.+.
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8752 22366778888888899999888887764
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.5e-06 Score=78.69 Aligned_cols=132 Identities=16% Similarity=0.044 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcC
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 223 (531)
+.+.-+-.+...+.-+.+.++.+|+..+.=.....+++.++.++.+++++.+.=+++-++.+++.|........+ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 334555555666777788888999876665666777888899999999999988888899999988887777776 4455
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc
Q 009617 224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (531)
Q Consensus 224 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~ 280 (531)
++ ..++-+..+.+.++++|+..-..+.....+-|..+++...+.++..+.+++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~ 193 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFF 193 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 357788888888888888776666542245577888777766655554444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-05 Score=74.04 Aligned_cols=360 Identities=13% Similarity=-0.052 Sum_probs=173.6
Q ss_pred HHHHHHHHhhHhHHhhhhhHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHH
Q 009617 108 VACLGAILFGYHLGVVNGALEYLAKDLGI-AENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (531)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 186 (531)
.++...++...+.-+.....+.+..+..- +--.. +...-.-.+...+.++..|.+.||..|.+++..++++--++..
T Consensus 6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~--siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPV--SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 45666666666666777777776666632 21111 3333334445567788889999999999988777665433332
Q ss_pred HHHH------h--c----hHHH---HHHHHHHHHhhhhhc-cchhhhhhhhcCC------ccccchhHHHHHHHHHHHHH
Q 009617 187 LCAT------A--Q----SVQT---MIIGRVLAGIGIGIS-SAIVPLYISEISP------TEIRGALGSVNQLFICVGIL 244 (531)
Q Consensus 187 ~~~~------~--~----~~~~---l~~~r~l~G~~~~~~-~~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~G~~ 244 (531)
+.+. . + +-+. +++.-.+.|.-+-.. .....++=-||.. ++.+.+..+...-.-.+.-+
T Consensus 84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl 163 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL 163 (432)
T ss_pred HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence 2221 1 1 1122 222222222221211 1112222235532 33345666666666677889
Q ss_pred HHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc-c----ccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHH
Q 009617 245 AALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-S----PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319 (531)
Q Consensus 245 ~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~-~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (531)
++|++.|.+... .+.+....+.+...++..+.=++ + ...|. +..+++.++........ +..+.+......++
T Consensus 164 laPl~vG~l~t~-~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 240 (432)
T PF06963_consen 164 LAPLFVGLLMTF-ASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILKR 240 (432)
T ss_pred HHHHHHHHHhhc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHHH
Confidence 999999998743 67787777777777655443222 1 22221 22121111111000000 00000000000000
Q ss_pred hccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhhHH--------------HHHHH
Q 009617 320 AGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA--------------SALVG 385 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~ 385 (531)
..+.-.+....|+..++.+.+..-+...++++.. .. +......+....|++....+ .....
T Consensus 241 ~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TV----Ls-f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~ 315 (432)
T PF06963_consen 241 LWNPLRTIIRGWRTYFRQPVFLASFALALLYFTV----LS-FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPW 315 (432)
T ss_pred HHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHH----hc-CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111234566666655544433333333221 11 12233344455587776332 22233
Q ss_pred HhhhcCccHHHHHHhHHHHHHHHHHHHHhhccccc--CcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHH
Q 009617 386 AANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLA--PYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 463 (531)
Q Consensus 386 ~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 463 (531)
+.+|+|..+.-.++.....+++.+..........+ .......+.+..+--.|.- ++-....-+++|.+|+++||+..
T Consensus 316 l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~ 394 (432)
T PF06963_consen 316 LMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVS 394 (432)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHH
Confidence 57888888877777666555554443332221111 0011111222222222211 12222333788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009617 464 ALSLGMHWISNFVIG 478 (531)
Q Consensus 464 g~~~~~~~~g~~i~~ 478 (531)
|+-+...++...+.-
T Consensus 395 gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 395 GVQNSLQSLFELLSF 409 (432)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988775543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-07 Score=89.76 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=133.0
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
.+=.-.||++..+.-. |........|-++.-++.+++.+|+|+-+++.+++.+.++=.+..++.+|.|..+...+++|
T Consensus 393 FLfWHled~~~~~~Lf--Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqg 470 (618)
T KOG3762|consen 393 FLFWHLEDLGGIKTLF--GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQG 470 (618)
T ss_pred HHHHHHhhcCCcceee--eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHH
Confidence 3344567787666666 88888888888899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHH-HHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~ 280 (531)
+..+..+.++.+|+++..||+-|..+-++.+.. .++|-.+|.++||.+... .|=|..|.+.++.+++.++....
T Consensus 471 it~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 471 ITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER-FGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee-ehhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997654 788889999999999855 78899999999888776665544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-06 Score=86.67 Aligned_cols=123 Identities=9% Similarity=-0.123 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcC
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 223 (531)
+...+.+..+..++.++++++.||+++|+++.++.++..+..++..+.++... ++.-++.|++.+..+|.......+..
T Consensus 272 ~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~ 350 (410)
T TIGR00885 272 ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGL 350 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55677777888999999999999999999999999999888888888777544 56677888999999999999999999
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhhcccCCCC-----chhHHHHHHhHH
Q 009617 224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-----LWWRTMFGLAAI 269 (531)
Q Consensus 224 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-----~gwr~~f~~~~~ 269 (531)
+++.+..+.++.. + .+|.++.|.+.|.+.+.. .+.+..|++..+
T Consensus 351 g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~ 399 (410)
T TIGR00885 351 GQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL 399 (410)
T ss_pred hhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence 8775433333333 3 389999999999988631 247777776443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-07 Score=88.78 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhhHhHHhhhhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccc--------hhhh-h
Q 009617 106 VGVACLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR--------TRTF-Q 175 (531)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr--------r~~~-~ 175 (531)
++.++++.+........+....| ++.+-+|.+..+. |++.++..+...+..+++|.++||.-+ ||.+ .
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~--G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET--GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 44455555555555555444444 6777899999999 999999999999999999999998744 2333 4
Q ss_pred hhhHHHHHHHHHHHHhchHHH-HHHHHHHHHhhh-hhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhccc
Q 009617 176 LDAVPLAAGAFLCATAQSVQT-MIIGRVLAGIGI-GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (531)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 253 (531)
++....+++.++.++.++-.. +.+.-+..+.+. |...+....-..|..| +.-+..+|+.+....+..+++|.+.+.+
T Consensus 338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~ 416 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGII 416 (466)
T ss_pred HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence 556666666666666653222 122222222222 2222333333333344 4469999999999999999999999998
Q ss_pred CCC--CchhHHHHHHhHHHHHHHHHHhccc
Q 009617 254 AGN--PLWWRTMFGLAAIPSILLALGMGLS 281 (531)
Q Consensus 254 ~~~--~~gwr~~f~~~~~~~~~~~~~~~~~ 281 (531)
..+ ...||+.|++.+++.++..+.+.++
T Consensus 417 ~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 417 VTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 842 2479999999999987776655554
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=87.75 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=124.9
Q ss_pred HhHHhhhhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhcc--chhhhhhhhHHHHHHHHHHHHhchH
Q 009617 118 YHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCATAQSV 194 (531)
Q Consensus 118 ~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~ 194 (531)
......-|.++. +.+.+..+..+. |+..--..+.+.++..+.|.++||++ |-.....++++.++++....+++++
T Consensus 284 ~~lafLePtlslwm~e~m~~p~w~~--G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~ 361 (464)
T KOG3764|consen 284 SSLAFLEPTLSLWMLETMFTPGWEV--GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI 361 (464)
T ss_pred chHHHhCcccHHHHHHhccCCCcce--eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH
Confidence 334455565655 777888666688 88888888999999999999999999 5444467777778888888899999
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCC---cc---ccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISP---TE---IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
.++.+-++..|++.+.........+..... .+ --|...++...++.+|..+||.+++.+.+. .|++|...+.+
T Consensus 362 ~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~-iGF~wl~~iig 440 (464)
T KOG3764|consen 362 AQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA-IGFEWLMTIIG 440 (464)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee-hhHHHHHHHHH
Confidence 999999998888877766555544444443 23 347889999999999999999999999965 89999999999
Q ss_pred HHHHHHHHHhc
Q 009617 269 IPSILLALGMG 279 (531)
Q Consensus 269 ~~~~~~~~~~~ 279 (531)
+..++..-++.
T Consensus 441 ~~n~iyapvl~ 451 (464)
T KOG3764|consen 441 ILNLIYAPVLL 451 (464)
T ss_pred HHHHHHHHHHH
Confidence 98877655443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=86.70 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=77.7
Q ss_pred hhHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccCh
Q 009617 377 DVAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS 456 (531)
Q Consensus 377 ~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 456 (531)
...+..++.++|++|||.++..+.+..++..++.+.. .+. ...+..=+.++..-+...+..++++|.+++
T Consensus 82 ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S---------~~F-~afv~aR~l~Gi~kgnl~v~rAiisdV~se 151 (451)
T KOG2615|consen 82 FISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS---------RNF-AAFVLARFLGGIFKGNLSVIRAIISDVVSE 151 (451)
T ss_pred HHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH---------HHH-HHHHHHHHhhhhccCchHHHHHHHHhhcCh
Confidence 3556677788999999999999999888877777664 223 222222233333345555667799999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 457 RIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 457 ~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
++|+.+++.+++...+|.++||.++|++..
T Consensus 152 k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 152 KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 999999999999999999999999999987
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=93.08 Aligned_cols=123 Identities=9% Similarity=0.038 Sum_probs=107.2
Q ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh----------chHHHHHHH
Q 009617 131 AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA----------QSVQTMIIG 200 (531)
Q Consensus 131 ~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~ 200 (531)
.+.+|.++.+. |++.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..
T Consensus 280 ~~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~ 357 (468)
T TIGR00788 280 TQCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD 357 (468)
T ss_pred cccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence 35789999999 999999999999999999999999999999999999999887654311 333445566
Q ss_pred HHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
-++.+++.+..+.+...++.+..|++.+|...++..+..++|..+++.+++.+.+
T Consensus 358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 358 SIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred hHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999888764
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-06 Score=86.62 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=97.0
Q ss_pred HHHHHHhHHHHHHHcCCChhhH-------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcch
Q 009617 358 INAVVYYSTSVFRSVGIESDVA-------------ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSG 424 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~g~~~~~~-------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (531)
.+.+..+.+.+.+++|++.... ....+.+.||+|+|+++.++.++..++.+++++...... ..+.
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i--~~s~ 120 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI--EGSV 120 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc--cCcH
Confidence 3455566777778888876521 113455689999999999999999999988877421100 1122
Q ss_pred hHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHH
Q 009617 425 TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLA 504 (531)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 504 (531)
+...+..++.+.+.+. ..+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...|++.+++.++.
T Consensus 121 ~~l~l~r~l~G~G~~~-~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 121 VRLSVYNGLMTLGCML-FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 3233333333333322 22233335677887 779999999999999999876666655554 34667777777777766
Q ss_pred HHHhheecc
Q 009617 505 VLYIAVNVV 513 (531)
Q Consensus 505 ~~~~~~~~~ 513 (531)
.++.+.+.+
T Consensus 198 ~ll~~~~vr 206 (591)
T PTZ00207 198 GILAIVFMR 206 (591)
T ss_pred HHHHHhhee
Confidence 665555444
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.2e-07 Score=80.56 Aligned_cols=382 Identities=14% Similarity=0.106 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHhhHhHHhhhhhHHHHH-HhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHH
Q 009617 105 FVGVACLGAILFGYHLGVVNGALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA 183 (531)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 183 (531)
+.+++|+..+..-+ +-.-..+.|++. .+.|+++.+.. .-+.-.-...+.+.-++.=.+.|-.-.|++++.-.+....
T Consensus 7 ~~~llC~yG~~~e~-RPseP~~tpyl~gp~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~ 84 (433)
T KOG3810|consen 7 ITCLLCLYGFVREF-RPSEPYLTPYLLGPDKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVP 84 (433)
T ss_pred hhhhhhhhhHHHHh-CCCCCccchhccCCCCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhH
Confidence 34445554444322 222222344444 44566665541 1222233344556666777899999999999988888888
Q ss_pred HHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC-CchhHH
Q 009617 184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-PLWWRT 262 (531)
Q Consensus 184 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~gwr~ 262 (531)
...+.-+.++.+.+-+.-++.|...+ ...+-++++-+..+++++.++.+.-.+....|...|..++-.+... ..++..
T Consensus 85 ~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~ 163 (433)
T KOG3810|consen 85 VWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTT 163 (433)
T ss_pred HHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhh
Confidence 88889999999999999999999866 5567788999999999999999999999888888888888777642 234555
Q ss_pred HHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHH
Q 009617 263 MFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342 (531)
Q Consensus 263 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (531)
.-.+......+..+..+++|..++....+.++++.. ..+..+.+...+.....+. .-..-...+.+..+++....
T Consensus 164 LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e~~~~~~~~~~~l~~---~~~~l~~~l~~~y~np~ll~ 238 (433)
T KOG3810|consen 164 LNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLEEMNPQASYMSYLRG---AFVLLWRDLQECYSNPRLLK 238 (433)
T ss_pred hchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccchhcCccchhhHHHHH---HHHHHHHHHHHHhcCchhhh
Confidence 555554444556666777777665444333332111 1111100000000000000 00000112333344432211
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCh--------hhHHHHHHHHhh--------hcCcc--HHHHHHhHHHH
Q 009617 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES--------DVAASALVGAAN--------VFGRK--NLLTFSFTGMA 404 (531)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~--------~~gr~--~~~~~~~~~~~ 404 (531)
..++......++.-..+|...+.++..-.. .....+++.+++ .+.|. .++.++.+..+
T Consensus 239 ----WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~a 314 (433)
T KOG3810|consen 239 ----WSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQA 314 (433)
T ss_pred ----hHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhh
Confidence 122233333345566666666655542110 112222222221 11222 12223322222
Q ss_pred HHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 009617 405 ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSV 484 (531)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~ 484 (531)
...+.+. ...+.++..+...++...+......... -+++....+.-|...|++.++.-+-..+...+.
T Consensus 315 gllf~m~--------~t~~Iw~~Ya~yvlfr~~y~l~itiA~~-~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV--- 382 (433)
T KOG3810|consen 315 GLLFIMA--------QTQHIWVCYAGYVLFRVIYQLTITIATF-QIARNLSSELFGLVFGINTFVALILQSILTLIV--- 382 (433)
T ss_pred hhhhhhh--------cccceehhhhhHHHHHhhHhhhhhHHHH-HHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---
Confidence 2222221 2335566666666666666654433333 455555668889999998887766665555443
Q ss_pred HHhhc-----------cchhhHHHHHHHHHHHHHhhe
Q 009617 485 VNKFG-----------ISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 485 ~~~~g-----------~~~~~~~~~~~~~~~~~~~~~ 510 (531)
.|..| |..-|.+++++.+++..+.+.
T Consensus 383 vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 383 VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL 419 (433)
T ss_pred EcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence 23221 334577777777777665443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-06 Score=69.26 Aligned_cols=110 Identities=13% Similarity=0.094 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcC
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 223 (531)
-...++......++.++.+.+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-++.|++.+..++....++.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 34566677777888899999999999999999999999865544 35678889999999999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 224 PTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 224 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
++++|++-.+++......+.++|.++..++.
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888888887765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-07 Score=87.46 Aligned_cols=183 Identities=14% Similarity=-0.001 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHH------HHHHHH-HHHHHHHHHHhHHhhhhhccchhhhhh
Q 009617 104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ------GWIVSS-LLAGATVGSFTGGSLADKFGRTRTFQL 176 (531)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~------~~~~s~-~~~~~~i~~~~~g~l~dr~Grr~~~~~ 176 (531)
..++..+..+|+........+.....+-+..|..+.+... +....+ ...++..+-.+...+.|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 3455667777776666666666777788877776554411 111111 122233355566778999999999999
Q ss_pred hhHHHHHHHHHHHHhch----HHHHHHHHHHHHhhhh-hccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhc
Q 009617 177 DAVPLAAGAFLCATAQS----VQTMIIGRVLAGIGIG-ISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL 251 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 251 (531)
+.+++++..+..+...| -..+++...+..+... +.......+-+|.+|.+-|+..-|+..+.+-.|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999999999988766 2223333333333221 223344556799999999999999999999999999998888
Q ss_pred ccCCC----CchhHHHHHHhHHHHHHHHHHhcccccchh
Q 009617 252 PLAGN----PLWWRTMFGLAAIPSILLALGMGLSPESPR 286 (531)
Q Consensus 252 ~l~~~----~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~ 286 (531)
.+.+. ..|-|++|++.+..+++..+..+++||+..
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 87751 368999999999999999988999998864
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-05 Score=71.56 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=93.2
Q ss_pred HHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhh-----hccchhhhh-hhhHHHH
Q 009617 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTFQ-LDAVPLA 182 (531)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~~~-~~~~~~~ 182 (531)
+.+.+.+.+.-.+... .+|.+.+.=|.|.++. +.. +..+..+ ---++|.++.| |+||||..+ -+..+.+
T Consensus 36 Ll~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~f-S~ay~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG 110 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AIF-SFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLG 110 (510)
T ss_pred HHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hhh-hhhhhHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHH
Confidence 3444566677677766 8899988888887665 432 2222222 23477899999 999988654 3444444
Q ss_pred HHHHHHHHh-----------chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhc
Q 009617 183 AGAFLCATA-----------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL 251 (531)
Q Consensus 183 ~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 251 (531)
..+...+.. ++...+....++.-+.++.--.+.-.+.-.+..+++-|.+......+...|.++|..+--
T Consensus 111 ~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 111 LFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFL 190 (510)
T ss_pred HHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceee
Confidence 444444332 334444455566677766666667777778888999999999999999999888877654
Q ss_pred ccC
Q 009617 252 PLA 254 (531)
Q Consensus 252 ~l~ 254 (531)
.+.
T Consensus 191 aL~ 193 (510)
T KOG3574|consen 191 ALE 193 (510)
T ss_pred Eec
Confidence 443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.2e-05 Score=75.53 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=122.6
Q ss_pred HhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-cchhhhhhhhHHHHHHHHHHHHhch------
Q 009617 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQS------ 193 (531)
Q Consensus 121 ~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~------ 193 (531)
+.....+.++.+++|.+...+ .-..+.+.-...+.++.++.++|-| ||-+++.++.++..++.++..++..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p 132 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP 132 (571)
T ss_pred cchhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 445678899999999998777 8888888888889999999999976 9999999998888888655544311
Q ss_pred -------------------HHHHHHHHHHHHhhhhhccchhhhhhhhcCC---ccc-c--chhHHHHHHHHHHHHHHHHH
Q 009617 194 -------------------VQTMIIGRVLAGIGIGISSAIVPLYISEISP---TEI-R--GALGSVNQLFICVGILAALV 248 (531)
Q Consensus 194 -------------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~-r--~~~~~~~~~~~~~G~~~g~~ 248 (531)
...++.+.-+..+|.|+.-+....+-+|-++ +++ + ..-+.++....++|..++..
T Consensus 133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t 212 (571)
T KOG1237|consen 133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT 212 (571)
T ss_pred ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence 1246666678888999999999999999998 322 2 47788888899999988888
Q ss_pred hhcccCCCCchhHHHHHHhHHHHHHHHHHhc
Q 009617 249 AGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 249 ~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
+....-++ .+|.+-|.+..+..++.+++++
T Consensus 213 ~~vyiq~~-~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 213 VLVYIQDN-VGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHhhhhc-ccceeeccHHHHHHHHHHHHHH
Confidence 77776544 8999999888877766555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-06 Score=78.20 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=124.6
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhh-hccchhhhhhhhHHHHHHHHHHH---HhchHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-KFGRTRTFQLDAVPLAAGAFLCA---TAQSVQTMIIGR 201 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r 201 (531)
+=|+=.+-||++..+. .-+.+....|..++-...|++.. |.++++.-.+++.+..++..+.. ...+.+.+...-
T Consensus 231 LEPygg~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~ 308 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGV 308 (403)
T ss_pred cCCchhHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 4467778899999998 88999999999999999999887 67888887788887777765544 446788888999
Q ss_pred HHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC---------CCchhHHHHHHhHHHHH
Q 009617 202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------NPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 202 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------~~~gwr~~f~~~~~~~~ 272 (531)
++.|++.|.+.....+.+.|...+++.|..+|.|.....++..+|.++++.+.+ ...+|-.+|.+.++..+
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~ 388 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL 388 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999989999999999999998888888887643 23468888888887776
Q ss_pred HHHHHh
Q 009617 273 LLALGM 278 (531)
Q Consensus 273 ~~~~~~ 278 (531)
+.+++.
T Consensus 389 ~a~~ll 394 (403)
T PF03209_consen 389 AALVLL 394 (403)
T ss_pred HHHHHH
Confidence 655544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.7e-06 Score=78.91 Aligned_cols=125 Identities=12% Similarity=0.095 Sum_probs=92.3
Q ss_pred HHHHHhHHHHHHHcCCChhh-H--------------HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcc
Q 009617 359 NAVVYYSTSVFRSVGIESDV-A--------------ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYS 423 (531)
Q Consensus 359 ~~~~~~~~~~~~~~g~~~~~-~--------------~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (531)
....+..+++.++.|++... . ....+.++||+|.|+++..+.+...+..+++++.. +
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--------S 114 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--------S 114 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 34455677787888888775 2 23334569999999999999988888888887642 2
Q ss_pred hhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhh
Q 009617 424 GTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVY 494 (531)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 494 (531)
.....+.-++++.+-+..+ ....++...+|+++|+++.|+.++...+|.++++++.+. ....||+...
T Consensus 115 l~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~ 182 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS 182 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence 2334444445555544434 555688999999999999999999999999999999999 5567776543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.4e-06 Score=81.27 Aligned_cols=158 Identities=15% Similarity=0.085 Sum_probs=97.6
Q ss_pred HHHHHHhHHHHHHHcCCChhhHHHHH--------------HHHhh----hcCccHHHHHH-hHHHHHHHHHHHHHhhccc
Q 009617 358 INAVVYYSTSVFRSVGIESDVAASAL--------------VGAAN----VFGRKNLLTFS-FTGMAASMLLLSLSFTWKV 418 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~----~~gr~~~~~~~-~~~~~~~~~~~~~~~~~~~ 418 (531)
+.....+.+.+++..|.+......+. +.++| |+|||+..+.. .+..+++++++.+......
T Consensus 20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~ 99 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH 99 (477)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 44555556667788888776433332 33589 59999998764 5555555555554321100
Q ss_pred -----ccCcc-h---hHHHHHHHHHHHHHhcCcccccccccccccChhhh--hHHHHHHHHHHHHHHHHHHHhhHHH--H
Q 009617 419 -----LAPYS-G---TLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR--AKAVALSLGMHWISNFVIGLYFLSV--V 485 (531)
Q Consensus 419 -----~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~i~~~~~g~~--~ 485 (531)
..... . ...++...+..........|. .+++.|..|+++| +.+.++.+...++|+++++.+.+.. .
T Consensus 100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 00000 1 112222223333333333444 4589999998765 5799999999999999999888764 2
Q ss_pred Hhh-------------ccchhhHHHHHHHHHHHHHhheecccCC
Q 009617 486 NKF-------------GISTVYLGFATVCLLAVLYIAVNVVETK 516 (531)
Q Consensus 486 ~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (531)
+.. +++..|.+.+++.+++.++..+..+|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 221 3566788888888888888888888754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-09 Score=105.95 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=100.5
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH--H--hch------H
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA--T--AQS------V 194 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~------~ 194 (531)
...+.+.++.+.+.... ...+. .+...++.++...+.||+|||++++.+.++.+++.+..+ . .++ +
T Consensus 274 ~~~~~i~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T PF00083_consen 274 YYSPSIFENAGISNSFL-ATLIL---GLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI 349 (451)
T ss_pred ccccccccccccccccc-ccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35567777788776611 13322 233445666777999999999999999999888877664 1 111 2
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHH-HH
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS-IL 273 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~-~~ 273 (531)
..+....+.......+..+....+.+|.+|.+.|+++.++......++.++++.+...+.+. .+-...+++.+.++ +.
T Consensus 350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~i~~~~~~i~ 428 (451)
T PF00083_consen 350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-LGGWGVFLIFAGVCLIA 428 (451)
T ss_pred ccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccchhhHHHHHHH
Confidence 22222221111112234466668889999999999999999998888888888887766643 33133444444444 44
Q ss_pred HHHHhcccccchh
Q 009617 274 LALGMGLSPESPR 286 (531)
Q Consensus 274 ~~~~~~~~~e~~~ 286 (531)
..+..+++||+..
T Consensus 429 ~i~~~~~lpET~g 441 (451)
T PF00083_consen 429 IIFVYFFLPETKG 441 (451)
T ss_pred HhheeEEEeeCCC
Confidence 4455667899864
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-06 Score=73.24 Aligned_cols=98 Identities=21% Similarity=0.304 Sum_probs=76.7
Q ss_pred hhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHH
Q 009617 123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202 (531)
Q Consensus 123 ~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 202 (531)
.+|.+-++-+.+|....++ |.+.-+.+-...+...+.|.++|+-|||+.-+.-.+.+.++++ +-.++.|-.++++|.
T Consensus 56 QgPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~ 132 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRV 132 (454)
T ss_pred cCceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhh
Confidence 3556666778889988898 8887777777888889999999999999976555555544443 445788999999999
Q ss_pred HHHhhhhhccchhhh-hhhhcC
Q 009617 203 LAGIGIGISSAIVPL-YISEIS 223 (531)
Q Consensus 203 l~G~~~~~~~~~~~~-~i~~~~ 223 (531)
+.|+..+..+...-+ ++.|..
T Consensus 133 LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 133 LGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hhhHHHHHHHHHHHHHHHHHhh
Confidence 999999988887765 456665
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-05 Score=78.57 Aligned_cols=126 Identities=14% Similarity=0.035 Sum_probs=78.9
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhch--HHHHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS--VQTMIIGRVL 203 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l 203 (531)
...++.+...-++... +.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.++ ...+++.-++
T Consensus 250 ~~~y~~~y~~g~~~~~--~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (460)
T PRK11462 250 AMMYYVTWILGTPEVF--VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFV 327 (460)
T ss_pred HhhhhhhhhcCChHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3334444443333344 66777888888999999999999999999887655544443443333322 3334455567
Q ss_pred HHhhhhhccchhhhhhhhcCCc-----ccc--chhHHHHHHHHHHHHHHHHHhhccc
Q 009617 204 AGIGIGISSAIVPLYISEISPT-----EIR--GALGSVNQLFICVGILAALVAGLPL 253 (531)
Q Consensus 204 ~G~~~~~~~~~~~~~i~~~~~~-----~~r--~~~~~~~~~~~~~G~~~g~~~~~~l 253 (531)
.|++.+...+...++++|..+. .+| |..++......-+|..+|+.+++.+
T Consensus 328 ~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 328 IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7887777666667777776552 123 4555666666666766666665544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-05 Score=77.50 Aligned_cols=118 Identities=24% Similarity=0.273 Sum_probs=93.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhc--hHHHHHHHHHHHHhhhhhc
Q 009617 134 LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGIS 211 (531)
Q Consensus 134 ~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~ 211 (531)
+|.++... .+.......+..++.+++..+.+|+|+|+++.++.+++.++.++.-+.+ +.+.+++..++.+++.+..
T Consensus 267 lg~~~l~~--~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~ 344 (467)
T COG2211 267 LGDPELFA--YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIA 344 (467)
T ss_pred cCChHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcc
Confidence 34444444 7788888888888899999999999999999999999999999888876 7888889999999999999
Q ss_pred cchhhhhhhhcCCc------ccc-chhHHHHHHHHHHHHHHHHHhhccc
Q 009617 212 SAIVPLYISEISPT------EIR-GALGSVNQLFICVGILAALVAGLPL 253 (531)
Q Consensus 212 ~~~~~~~i~~~~~~------~~r-~~~~~~~~~~~~~G~~~g~~~~~~l 253 (531)
.+...++++|..+- ++| |...+......=+|.+++..+.+++
T Consensus 345 ~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 345 NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998876542 222 6777777777777777666555543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.1e-06 Score=84.87 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=93.8
Q ss_pred hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChh
Q 009617 378 VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR 457 (531)
Q Consensus 378 ~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 457 (531)
....+.+.++|++|||++++.+.++..++.++.++. .....+...=++.+.+..+...+...+..|.++++
T Consensus 133 vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~ 203 (521)
T KOG0255|consen 133 VGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK 203 (521)
T ss_pred HHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc
Confidence 445556788999999999999999999998777765 23333333334444444455666777899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccC
Q 009617 458 IRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVET 515 (531)
Q Consensus 458 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (531)
.|+.+..+ ..+...++.+++...+++.. +|++.+++.....++..++ +++.+|.
T Consensus 204 ~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 204 QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 99999999 88888999999999999877 7888888877777666555 4444443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=75.09 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=113.5
Q ss_pred hhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHH
Q 009617 125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (531)
Q Consensus 125 ~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 204 (531)
....++.+..|.++.+. +...+.+..+..+|.++..++..|+...|++.+..++..+.++..+++++...+ .+-++.
T Consensus 258 fl~~y~~~~~g~~~~~a--a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~i 334 (422)
T COG0738 258 FLVSYLEELLGLNEQQA--AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLI 334 (422)
T ss_pred HHHHHHHhcCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 34445555588888888 999999999999999999999999999999999999988889999999985554 345788
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHH
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~ 275 (531)
|+..+..+|...+...+..+.+ ....+..-....+|+++-|.+.|++.+. .|-...+.+..++|.+.+
T Consensus 335 g~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~-~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 335 GLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADM-FGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999833 3444444445567888888888888865 666766665555554433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.1e-06 Score=79.19 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcC----CChhhH--------------HHHHHHHhhhc-CccHHHHHHhHH
Q 009617 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVG----IESDVA--------------ASALVGAANVF-GRKNLLTFSFTG 402 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~--------------~~~~~~~~~~~-gr~~~~~~~~~~ 402 (531)
.+...+..-+.--++.|..-.....|+..+.+ ++...+ ..+.++++||+ |+|+.+..+.++
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail 101 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAIL 101 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 33444444555555444444444444444444 655522 23334568996 999999999999
Q ss_pred HHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChh--hhhHHHHHHHHHHHHHHHHHHHh
Q 009617 403 MAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR--IRAKAVALSLGMHWISNFVIGLY 480 (531)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~ 480 (531)
+.++.++++... ........+.+.+...+.+ ..-+...+++.|++|++ +|-.+.++.++..++|+.++|.+
T Consensus 102 ~~iGh~~L~~~~------~~~~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i 174 (498)
T COG3104 102 MAIGHLVLAISS------VSGPGGLYIGLALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII 174 (498)
T ss_pred HHHHHHHHhccc------cccccHHHHHHHHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence 999999998642 0122334444444444443 35566666889998854 47778899999999999999999
Q ss_pred hHHHHHhhccchhhHHHHHHHHHHHHHhheecc
Q 009617 481 FLSVVNKFGISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 481 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
.+++.+..||...|...++-..++.+..++..+
T Consensus 175 ~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 175 TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999988888888776665443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.2e-06 Score=58.08 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=56.3
Q ss_pred HHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHH
Q 009617 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181 (531)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 181 (531)
..+......+...|.+|...++.|++..++ |.+.++..+...++++++|.++||+|+++..+....++
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 344444456666778888888899999999 99999999999999999999999999998887665543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.4e-05 Score=79.56 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=94.9
Q ss_pred hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChh
Q 009617 378 VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR 457 (531)
Q Consensus 378 ~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 457 (531)
......+.++|++|||+.++++.+...++.++...+. +....+++-++.+.+.+.... +...|.+|..|++
T Consensus 104 ~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--------~~~~l~~GR~l~G~g~G~~~~-~~piy~sEiap~~ 174 (513)
T KOG0254|consen 104 VGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--------SWYQLIVGRILTGLGVGGASV-LAPVYISEIAPAH 174 (513)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHhccchhhhhh-cchhhHhhcCChh
Confidence 4555566689999999999999999999999998763 445566666666666655444 4444999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh--ccchhhHHHHHHHHHHHHHhheecccC
Q 009617 458 IRAKAVALSLGMHWISNFVIGLYFLSVVNKF--GISTVYLGFATVCLLAVLYIAVNVVET 515 (531)
Q Consensus 458 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (531)
.||...+..+....+|..++ .+.+....+. +|+..+.+..+.+++..+. .++.||+
T Consensus 175 ~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 175 IRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 99999999999888777666 6666665543 7887777777766666666 5556653
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.9e-05 Score=69.28 Aligned_cols=144 Identities=15% Similarity=0.054 Sum_probs=92.3
Q ss_pred hhHHHHHHhHHHHHHHcCCChhh-------------HHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCc
Q 009617 356 AGINAVVYYSTSVFRSVGIESDV-------------AASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPY 422 (531)
Q Consensus 356 ~~~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (531)
...+.+..|.+.+-+..|++... .+...+.+.|++|.+.++.++.+...++..++........ .
T Consensus 16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i-~-- 92 (250)
T PF06813_consen 16 GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI-P-- 92 (250)
T ss_pred CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc-C--
Confidence 34566778888888888888763 2344456799999999999999999999988877643221 1
Q ss_pred chhHHHHHHHHHHHHHhcCcc-cccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHH
Q 009617 423 SGTLAVLGTVLYVLSFSLGAG-PVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVC 501 (531)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 501 (531)
....+......+..+.+.++. ........+.+| +.||++.|+.-....+++++...+...+.+. +....+.+.+...
T Consensus 93 ~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~ 170 (250)
T PF06813_consen 93 SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLP 170 (250)
T ss_pred ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 122233333333333333221 222223447788 5799999999999999999988887776654 3233344444443
Q ss_pred HHH
Q 009617 502 LLA 504 (531)
Q Consensus 502 ~~~ 504 (531)
.+.
T Consensus 171 ~~v 173 (250)
T PF06813_consen 171 AVV 173 (250)
T ss_pred HHH
Confidence 333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.2e-05 Score=76.59 Aligned_cols=162 Identities=14% Similarity=0.009 Sum_probs=101.6
Q ss_pred HHHHHHHHhhHhHHhhhhhHHHHHHh-cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh----ccchhhhhhhhHHHH
Q 009617 108 VACLGAILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTRTFQLDAVPLA 182 (531)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~~~~~~~~~ 182 (531)
..++..+......+.+...+|.+.++ .|.+..+. +.+...+.++.+++.+++|+++|| ..+|......+.++.
T Consensus 277 ~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a--~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 277 PFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA--NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh--ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444455555555556677777777 56888888 999999999999999999999999 677777777666666
Q ss_pred HHH-HHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCcccc-chhHHHHHHHHHHHHHHHHHhhcccCCCCchh
Q 009617 183 AGA-FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGLPLAGNPLWW 260 (531)
Q Consensus 183 ~~~-~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gw 260 (531)
+.. .......+.......-+..+.+.....+.+...+++....+.| -...+....+.+.+.++++.+-.......++|
T Consensus 355 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~ 434 (495)
T KOG2533|consen 355 IIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGW 434 (495)
T ss_pred HHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhh
Confidence 555 4333343344444444444455555666777777777765543 44444445555555444444433333233678
Q ss_pred HHHHHHhHHHH
Q 009617 261 RTMFGLAAIPS 271 (531)
Q Consensus 261 r~~f~~~~~~~ 271 (531)
.+.|......+
T Consensus 435 ~~~f~~~~~~~ 445 (495)
T KOG2533|consen 435 GAVFYMLVAAC 445 (495)
T ss_pred hhHHHHHHHHH
Confidence 88885444433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=7e-05 Score=73.60 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=111.4
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHH-hhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 009617 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG-SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG 205 (531)
Q Consensus 127 ~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g-~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 205 (531)
.-++...+++++.+. +...+...+...+++++.. .+...+|-|++...|++.-.+..++.+++++.|+++...++.+
T Consensus 265 ~~yl~~~f~w~~~~~--s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~ 342 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEF--SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVA 342 (463)
T ss_pred EEEEeeecCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Confidence 445777899999999 9899998888899998877 6777889999999999999999999999999999999998888
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
+. +...+...+.++.+..++++|++.++......+..+++|.+-+.+.
T Consensus 343 ~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 343 LA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 87 5578899999999999999999999999999999999888877664
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0042 Score=59.93 Aligned_cols=166 Identities=13% Similarity=0.020 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhHhHHhhhhhHHHHHHhcCCC---cchhHHHHHHHHHHH-HHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIA---ENTVLQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s---~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
..+.+..+...++.+ .+-.+++.+.++ .+.+ .++-+...+ +..+..++.+++.+++-+.+++-+.+..+.
T Consensus 30 lpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I--~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~ 103 (509)
T COG3202 30 LPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESI--SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFL 103 (509)
T ss_pred HHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhh--HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 333444444444343 445567777555 3334 666666666 566788889999999999999988888888
Q ss_pred HHHHHHHHh---------ch-----------------------HHHHHHHHHHHHhhhhhccc-hhhhhhhhcCCccccc
Q 009617 183 AGAFLCATA---------QS-----------------------VQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRG 229 (531)
Q Consensus 183 ~~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~ 229 (531)
...+++++. ++ .|...+..++.=+-.+.... .-.....|.++.+|-.
T Consensus 104 ~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eak 183 (509)
T COG3202 104 GFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAK 183 (509)
T ss_pred HHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 777777764 11 12222222333333333333 3456678999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCCch---------hHHHHHHhHHHHHHHHHHh
Q 009617 230 ALGSVNQLFICVGILAALVAGLPLAGNPLW---------WRTMFGLAAIPSILLALGM 278 (531)
Q Consensus 230 ~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g---------wr~~f~~~~~~~~~~~~~~ 278 (531)
|..++++.+.+++..++..+..++.+.... -+..+.+.++.+++...+.
T Consensus 184 RFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~ 241 (509)
T COG3202 184 RFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLY 241 (509)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888887753222 3444444444444444443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.025 Score=56.24 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=71.3
Q ss_pred HHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh---------c----------------------hHHHHHHHHH
Q 009617 154 ATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---------Q----------------------SVQTMIIGRV 202 (531)
Q Consensus 154 ~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~----------------------~~~~l~~~r~ 202 (531)
..+...+..++++++++.+++-+.+..+.....++++. + +.|.+.+..+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999887777776666666653 1 1111222222
Q ss_pred HHHhhhhhccc-hhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 203 LAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 203 l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
+.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+...+.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333 357788999999999999999999999999988888777765
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0012 Score=64.81 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=26.9
Q ss_pred cccccccccccChhhhhHHHHHHHHHHHHHHHHHHHh
Q 009617 444 PVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLY 480 (531)
Q Consensus 444 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 480 (531)
.....+..+..++++|..+..++..+-.+|-.+|..+
T Consensus 391 s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 391 SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444467777888888888888888777777777654
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.001 Score=64.16 Aligned_cols=142 Identities=12% Similarity=0.084 Sum_probs=81.0
Q ss_pred HHHHHHHhhHhHHhhhhhHHHHHHh--cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhh-----hccchhhhhh-hhHH
Q 009617 109 ACLGAILFGYHLGVVNGALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTFQL-DAVP 180 (531)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~~~~-~~~~ 180 (531)
+.+.+++.+.-.+.....+|.+.++ -++|.++. |. .|+....+.+ -++|.++.| |+||||..++ .-.+
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~-fSla~~PfSl-KlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AI-FSLASYPFSL-KLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHh--ee-eeeeechhHH-HHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 3455666676666655678888888 67777776 43 2222222221 245555555 8999987643 2233
Q ss_pred HHHHHHHHHHhc----------------------h--HHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHH
Q 009617 181 LAAGAFLCATAQ----------------------S--VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ 236 (531)
Q Consensus 181 ~~~~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 236 (531)
.++..+..+..- + ...+....++.=+-++---.+.-.+.-.+..+++++.|.....
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 333333332211 0 1122233333333334333444455566677888999999999
Q ss_pred HHHHHHHHHHHHhhcccC
Q 009617 237 LFICVGILAALVAGLPLA 254 (531)
Q Consensus 237 ~~~~~G~~~g~~~~~~l~ 254 (531)
.+.+.|.+++..+--.+.
T Consensus 161 vG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALN 178 (544)
T ss_pred hHhhhhHHHHHHHHHhhC
Confidence 999999888877755554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0077 Score=57.20 Aligned_cols=115 Identities=14% Similarity=0.005 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH----HHhHHhhhhhccchhhhhhhhHHHH
Q 009617 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVG----SFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~----~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
.+.++..+..-..++.+..+.++..+++-.+..+ ......+.+...+. ...-..+.-|.-+|..+.. .+...
T Consensus 21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l-~~~~i 96 (406)
T KOG1479|consen 21 LIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLL-SLIAI 96 (406)
T ss_pred HHHHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3334444444455666667888888888655442 33333344433333 3334444444222211111 11111
Q ss_pred HHHHHHHHh---------chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCcc
Q 009617 183 AGAFLCATA---------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226 (531)
Q Consensus 183 ~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 226 (531)
+..+.+.++ ..+...++.-.+.|++.|..........++. |++
T Consensus 97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ 148 (406)
T KOG1479|consen 97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSE 148 (406)
T ss_pred HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHH
Confidence 111222222 2345556666788888887777777666654 544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0014 Score=67.80 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=83.0
Q ss_pred HHHHHhhh-cCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChh---
Q 009617 382 ALVGAANV-FGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR--- 457 (531)
Q Consensus 382 ~~~~~~~~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--- 457 (531)
+.+.++|+ +|+++.+.++.++..++.+++.+...............++++.+..+|. .+.-|...+...|.++++
T Consensus 42 lGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~-GgiKp~vsaf~gdqf~~~~~~ 120 (654)
T TIGR00926 42 IGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGT-GGIKPCVSAFGGDQFEERQLS 120 (654)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhc-cccccCchhhhHhhcCccchh
Confidence 33445665 5999999999999888888876632111100111122333333333333 345566666888888643
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh-------ccchhhHHHHHHHHHHHHHhhe
Q 009617 458 IRAKAVALSLGMHWISNFVIGLYFLSVVNKF-------GISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 458 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~ 510 (531)
.+-....+.....++|+.+++++.+.+.+.. +|...|.+.+++.+++.++...
T Consensus 121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4777888999999999999999999887553 4777787777777776665543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00071 Score=64.62 Aligned_cols=114 Identities=19% Similarity=0.117 Sum_probs=82.1
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH-----HHHHHHHHhchHHHHHHHHHHHHhhh
Q 009617 134 LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA-----AGAFLCATAQSVQTMIIGRVLAGIGI 208 (531)
Q Consensus 134 ~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~r~l~G~~~ 208 (531)
+.-..+++ .+...+|.+|-.++.--...+ |+ |++.+.+.+-.. +.....-+.++.|.+++.-+..|+..
T Consensus 276 ~~~~r~~Y--~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlG 349 (402)
T PF02487_consen 276 FFSPRDQY--RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLG 349 (402)
T ss_pred CCCHHHHH--HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 33334556 777888888776664432221 33 444433332222 22223334588999999999999999
Q ss_pred hhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhccc
Q 009617 209 GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (531)
Q Consensus 209 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 253 (531)
|+.++.....+.|-.++++|..++|....+-++|..++.+++-.+
T Consensus 350 Ga~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 350 GASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888655
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0003 Score=68.34 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=87.2
Q ss_pred hhhhhhhHHHHHHHHHHHHh--c-h------HHHHHHHHHHHHhhhhhccchhhhhhhhcCCcc---ccchhHHHHHHHH
Q 009617 172 RTFQLDAVPLAAGAFLCATA--Q-S------VQTMIIGRVLAGIGIGISSAIVPLYISEISPTE---IRGALGSVNQLFI 239 (531)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~--~-~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 239 (531)
|.++++.+++.+|.++..++ + + .+.++++-++.++|.|+.-|....+.+|.++++ +|.+.+.+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56778888888888884443 2 2 257889999999999999999999999999876 3577888999999
Q ss_pred HHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc
Q 009617 240 CVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (531)
Q Consensus 240 ~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~ 280 (531)
++|..++..+.+.+.++ .||.+.|.+.++..++..+.++.
T Consensus 82 n~G~~~~~~~~~~i~~~-~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN-YGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHC-S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccc-cchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999988754 89999999998888766665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0056 Score=57.03 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=77.1
Q ss_pred hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccc-cccccccc---
Q 009617 378 VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPV-PALLLPEI--- 453 (531)
Q Consensus 378 ~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 453 (531)
..+...+.++||+|||+..+...++..++++..-.. +....++.-++-+...++....- .| ++.|.
T Consensus 84 i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~---------~~~~L~~GRvlgGiaTSLLfS~FEsW-~V~Eh~~~ 153 (354)
T PF05631_consen 84 IFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS---------NYPVLLLGRVLGGIATSLLFSAFESW-MVHEHNKR 153 (354)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHc
Confidence 445555667999999999888777777777654321 22333333333333332211111 12 33333
Q ss_pred -cChhhhhHHHHHHHHH-HHHHHHHHHHhhHHHHHhhcc--chhhHHHHHHHHHHHHHhheecccCCCC
Q 009617 454 -FASRIRAKAVALSLGM-HWISNFVIGLYFLSVVNKFGI--STVYLGFATVCLLAVLYIAVNVVETKGR 518 (531)
Q Consensus 454 -~p~~~~~~~~g~~~~~-~~~g~~i~~~~~g~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (531)
+|++..+...+.+... +.+-++++..+.-.+.+..+. ..+|.....+++++.+++....+|+.+.
T Consensus 154 g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 154 GFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred CCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 5666666666655533 344455556666666666654 6788888888888888777777776554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0056 Score=61.74 Aligned_cols=145 Identities=16% Similarity=0.032 Sum_probs=87.4
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhh-hhHHHH-HHHHHH----HHhchH-HHHHHH
Q 009617 128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL-DAVPLA-AGAFLC----ATAQSV-QTMIIG 200 (531)
Q Consensus 128 ~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~-~~~~~~----~~~~~~-~~l~~~ 200 (531)
-.+.--+|.+..+. +.+++++++|.++|+.+++++.++.-++...+- ++.+.+ ++..+. ++...+ ..++..
T Consensus 39 r~l~~~~G~s~~~~--~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~ 116 (521)
T PRK03612 39 TLASYLLGDSVTQF--STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVL 116 (521)
T ss_pred HHHHHHhCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678887777 999999999999999999988744333322211 111111 111111 111111 122344
Q ss_pred HHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHH
Q 009617 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (531)
Q Consensus 201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~ 275 (531)
-++.|+..|+..|....+..+... ++-++..|..+....+|.++|.++.+++.-...|-....++.+.+.++..
T Consensus 117 ~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 117 VLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 466788888888887777665432 22467788888999999999999988876433554444444455444333
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=62.28 Aligned_cols=123 Identities=15% Similarity=0.003 Sum_probs=80.2
Q ss_pred HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccc-hhhhhhhhHHHHHHHHHHHHh----chHHHHHHHHHHH
Q 009617 130 LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFLCATA----QSVQTMIIGRVLA 204 (531)
Q Consensus 130 i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~ 204 (531)
....-|.+.... |++..+...+..+++++.|.+.||... |.++++......++....... .+.+.++..-.+.
T Consensus 292 ~l~~sgY~~~~a--G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~ 369 (480)
T KOG2563|consen 292 ALCPSGYEGVFA--GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLL 369 (480)
T ss_pred ccccccCCcccc--chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHH
Confidence 334445555556 999999999999999999999999864 666666666655553222222 2334466667788
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
|++.....|...-+-.|..-|..-+...|+......+=.++-..+-+...
T Consensus 370 g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~ 419 (480)
T KOG2563|consen 370 GFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILA 419 (480)
T ss_pred HHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHh
Confidence 88888899999988888765544456666655544433333333444443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0062 Score=60.30 Aligned_cols=143 Identities=19% Similarity=0.202 Sum_probs=86.4
Q ss_pred HHHHHHcCCChhhH-------------HHHHHHHhhhcC-----ccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHH
Q 009617 366 TSVFRSVGIESDVA-------------ASALVGAANVFG-----RKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLA 427 (531)
Q Consensus 366 ~~~~~~~g~~~~~~-------------~~~~~~~~~~~g-----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (531)
+++.++.|+++... -.+.+.++|.+. ||+.++++.++.+++.+.+...... ..+....
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~----~~s~~~~ 89 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS----ESSAAIA 89 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc----cchhhhH
Confidence 34445566666533 344455688772 5555666666665555555443211 1122222
Q ss_pred HHHHHHHHHHHhcCccccccccccccc---ChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHH
Q 009617 428 VLGTVLYVLSFSLGAGPVPALLLPEIF---ASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLA 504 (531)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 504 (531)
.+..++...+.... -.+.-++..|.. |.+ +|...+....+..+|++++..+.|.+.+..+++..|.+.+.+..+.
T Consensus 90 ~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 90 VVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM 167 (433)
T ss_pred HHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence 23333333333322 223333555554 433 7888888899999999999999999999999999998888777777
Q ss_pred HHHhheeccc
Q 009617 505 VLYIAVNVVE 514 (531)
Q Consensus 505 ~~~~~~~~~~ 514 (531)
.+....+.+|
T Consensus 168 ~~~~~~~~~e 177 (433)
T PF03092_consen 168 LIVALFLLEE 177 (433)
T ss_pred HHHHHHhhhh
Confidence 6666666665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.047 Score=53.40 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhHHhhhh---hccchhhhhhhhHHHHHHHHHHHHh------------------chHHHHHHHHHHHH
Q 009617 147 VSSLLAGATVGSFTGGSLAD---KFGRTRTFQLDAVPLAAGAFLCATA------------------QSVQTMIIGRVLAG 205 (531)
Q Consensus 147 ~s~~~~~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G 205 (531)
.-...+|..+++.+.+.+++ ++||++.+.++.++..++.++.-+. +++...++.-++.|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 33344455556666666765 5899999999988888887776553 24556777789999
Q ss_pred hhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhc
Q 009617 206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL 251 (531)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 251 (531)
++-+......+.++.+.+ +++|..+.++...-..++..++.....
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999 556888888888877777766544443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0047 Score=60.39 Aligned_cols=126 Identities=16% Similarity=0.055 Sum_probs=78.1
Q ss_pred hhhcCc-cHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHH
Q 009617 387 ANVFGR-KNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVAL 465 (531)
Q Consensus 387 ~~~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 465 (531)
..|.+. |+.++.+.+++.++.+++...... + +....+....=+..|.+.+.....-.|+++..-.+.|.++++.
T Consensus 95 s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~----~-~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~ 169 (488)
T KOG2325|consen 95 SNKTGSVKKPLIVSFLIAIIGNLLYLALAYV----P-NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAA 169 (488)
T ss_pred ccccCCcccCHHHHHHHHHHHHHHHHHHHhc----c-cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHH
Confidence 344443 788999999999999888433221 1 1122333333334444445555666688886666778888888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHh--h-----------ccchhhHHHHHHHHHHHHHhheecccCCC
Q 009617 466 SLGMHWISNFVIGLYFLSVVNK--F-----------GISTVYLGFATVCLLAVLYIAVNVVETKG 517 (531)
Q Consensus 466 ~~~~~~~g~~i~~~~~g~~~~~--~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (531)
......+|.++||.+...+..- . -|..+-++.+.+.++..++..++.+|..+
T Consensus 170 ~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 170 TSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 8887777777777665433210 0 14456677777777777777777766443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.011 Score=57.59 Aligned_cols=117 Identities=15% Similarity=0.034 Sum_probs=81.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcccc-cCcchhHHHHHHHHHHHHHhcCcccccccccccccChh---hhhHHHHHHHHH
Q 009617 394 NLLTFSFTGMAASMLLLSLSFTWKVL-APYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASR---IRAKAVALSLGM 469 (531)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~ 469 (531)
+++.++.++..+|.+++.+....... .........+++.+...|.+ +.-|...++..|.++++ .+......++..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 56778888888998887665433222 11122344555555555544 45566666888888755 567778888999
Q ss_pred HHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhhee
Q 009617 470 HWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVN 511 (531)
Q Consensus 470 ~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 511 (531)
.++|+.+++.+.+++.++.||...|.+.++..+++.+..+.-
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999888888777765544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.05 Score=48.24 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=36.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhcccCC----CCchhHHHHHHhHHHHHHHHHHhccc
Q 009617 226 EIRGALGSVNQLFICVGILAALVAGLPLAG----NPLWWRTMFGLAAIPSILLALGMGLS 281 (531)
Q Consensus 226 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~~~gwr~~f~~~~~~~~~~~~~~~~~ 281 (531)
++|+....+...+.++|.++..+.--+-.+ ....|++++.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777778888887766444222211 12469999999998886655555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.038 Score=54.49 Aligned_cols=108 Identities=15% Similarity=0.060 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhccch--hhhhhh--hHHHHHHHHHHHHh---------chHHHHHHHHHHHHhhhhh
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLD--AVPLAAGAFLCATA---------QSVQTMIIGRVLAGIGIGI 210 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~--~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~ 210 (531)
-.+..+|.+|-.+|..+..+.. .-++| ++++.+ =+++.-..++|..- ++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4566677777777776544321 11223 333222 12233333344322 4566677889999999999
Q ss_pred ccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcc
Q 009617 211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (531)
Q Consensus 211 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 252 (531)
....++.+..+..+++||..+..+...+..+|..+|..++-.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 989999999999999999999998888888898888877543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.14 Score=42.16 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=65.7
Q ss_pred HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhh
Q 009617 380 ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIR 459 (531)
Q Consensus 380 ~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 459 (531)
......+.+++|.|+.++++.+...+-....... +.+..+....+.+.+.+..+.... .++.+...++.+
T Consensus 54 ~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~---------~~~~l~~~s~l~G~~~a~lW~aqg-~ylt~~s~~~~~ 123 (156)
T PF05978_consen 54 CLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP---------NSYTLYPASALLGFGAALLWTAQG-TYLTSYSTEETI 123 (156)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhhHHhhHhhh-HHHHHcCCHHHH
Confidence 3344456899999999999887777555554321 334445555566666555454443 477888888899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009617 460 AKAVALSLGMHWISNFVIGLYFLSVV 485 (531)
Q Consensus 460 ~~~~g~~~~~~~~g~~i~~~~~g~~~ 485 (531)
++..|+.-.+...+.++|..+.-.+.
T Consensus 124 ~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 124 GRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888776654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.16 Score=49.66 Aligned_cols=125 Identities=20% Similarity=0.179 Sum_probs=90.7
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHH---h---c----hHHH
Q 009617 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---A---Q----SVQT 196 (531)
Q Consensus 127 ~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~---~----~~~~ 196 (531)
..++.. -|+++..+ |..-+...+....+.+...++.+|+|..+.=.+++..-.++..++.. . + +...
T Consensus 282 t~yl~~-~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~ 358 (432)
T PF06963_consen 282 TAYLKS-QGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYL 358 (432)
T ss_pred HHHHHH-CCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHH
Confidence 344444 49999999 99999999999999999999999999988877776655444433332 1 2 2223
Q ss_pred HHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC
Q 009617 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA 254 (531)
Q Consensus 197 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 254 (531)
++.+-.+.=+|-=++--...-++.|..|+++||...|.-....++--++-.+++-.+.
T Consensus 359 l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 359 LLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3333344444544455667778899999999999999999998888877777765554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.026 Score=50.97 Aligned_cols=127 Identities=16% Similarity=0.027 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccc
Q 009617 150 LLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG 229 (531)
Q Consensus 150 ~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 229 (531)
-.+...+..+.+..+.||+---.=..+..++.+.+.++.+++++.++-+.+-.+..++.|.......++- ..+++.
T Consensus 71 DilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~ls-s~Y~~~--- 146 (409)
T KOG3880|consen 71 DILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALS-SRYPSI--- 146 (409)
T ss_pred hhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhh-ccCCCc---
Confidence 3344445556666777876433333445667777888889999999988888888888876665555443 333332
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCC-CCchhHHHHHHhHHHHHHHHHHhccc
Q 009617 230 ALGSVNQLFICVGILAALVAGLPLAG-NPLWWRTMFGLAAIPSILLALGMGLS 281 (531)
Q Consensus 230 ~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~gwr~~f~~~~~~~~~~~~~~~~~ 281 (531)
..+.|..+.+..+++|..--.++.+ ....-|.+.++...+-++..+..+++
T Consensus 147 -~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 147 -VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred -eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 3344444444445555555445544 33567778777777666555555553
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.59 Score=48.44 Aligned_cols=136 Identities=10% Similarity=-0.028 Sum_probs=84.0
Q ss_pred hHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccc--------------c-----------------------
Q 009617 378 VAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVL--------------A----------------------- 420 (531)
Q Consensus 378 ~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~----------------------- 420 (531)
.....+.+...|..|-+.+-++.++++++.+++.+....... .
T Consensus 147 l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 226 (735)
T KOG3626|consen 147 LLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENS 226 (735)
T ss_pred hhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcc
Confidence 344445556677777788888999999999988765221100 0
Q ss_pred ---CcchhHHHHHHHHHHHHHhc---CcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHh-------
Q 009617 421 ---PYSGTLAVLGTVLYVLSFSL---GAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNK------- 487 (531)
Q Consensus 421 ---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~------- 487 (531)
.......++.+++..+..+. -..++-.+|+-|...+++.....|+..++..+|-++|=.+++...+.
T Consensus 227 ~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~ 306 (735)
T KOG3626|consen 227 KREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLS 306 (735)
T ss_pred cccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccC
Confidence 01111122222222222222 34566778999999999999999999999888887777776665532
Q ss_pred -----------hc-cchhhHHHHHHHHHHHHHhheecc
Q 009617 488 -----------FG-ISTVYLGFATVCLLAVLYIAVNVV 513 (531)
Q Consensus 488 -----------~g-~~~~~~~~~~~~~~~~~~~~~~~~ 513 (531)
.| |..-|++.+.+.++.++..+++-+
T Consensus 307 ~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 307 PIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 12 344566677777776666555443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.23 Score=45.59 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcC
Q 009617 151 LAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (531)
Q Consensus 151 ~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 223 (531)
.+..+...++.+.+..++|-|+.+.++...+..... .=+-+.+..++-.-.+.|++.+..+..--+|+++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 344456666667899999999999888777655322 223467888999999999999998888777776554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.3 Score=44.19 Aligned_cols=104 Identities=10% Similarity=-0.055 Sum_probs=66.7
Q ss_pred HHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhccc--ccCc--------------ch------hHHHHHHHHHHHHHhc
Q 009617 383 LVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKV--LAPY--------------SG------TLAVLGTVLYVLSFSL 440 (531)
Q Consensus 383 ~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------~~------~~~~~~~~~~~~~~~~ 440 (531)
...+++|++|++............++++++...... .+++ .. .+......+..-.++.
T Consensus 64 y~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~ 143 (472)
T TIGR00769 64 YTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGS 143 (472)
T ss_pred HHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344689999999888777666666666655432110 0000 00 1111112222222233
Q ss_pred Cccc-ccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009617 441 GAGP-VPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVN 486 (531)
Q Consensus 441 ~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 486 (531)
...+ +.+.+++|....++..+-.++....+++|..+++.+...+.+
T Consensus 144 ~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 144 VVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 677899999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.9 Score=41.85 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhh--hhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhh
Q 009617 141 VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF--QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLY 218 (531)
Q Consensus 141 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 218 (531)
...|.+-++..+..+++.+..|++..++.+..-+ ....++.+...+++++.+|.|..+++.++.+.......+.+..-
T Consensus 285 vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~q 364 (412)
T PF01770_consen 285 VYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQ 364 (412)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448899999999999999999997777764433 34444556666778889999999999988888888788888888
Q ss_pred hhhcCCccccchhHHHHHHH
Q 009617 219 ISEISPTEIRGALGSVNQLF 238 (531)
Q Consensus 219 i~~~~~~~~r~~~~~~~~~~ 238 (531)
++.....+.-|..+|+....
T Consensus 365 IA~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 365 IAKNLSEERYALVFGINTFV 384 (412)
T ss_pred HHHhccccceeeeeeeHHHH
Confidence 88877777668888876543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.018 Score=54.11 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=1.9
Q ss_pred ccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHh
Q 009617 443 GPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLY 480 (531)
Q Consensus 443 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 480 (531)
......+..+..++++|..+-.++..+-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577788887888777777777666666666544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.027 Score=57.22 Aligned_cols=155 Identities=12% Similarity=-0.017 Sum_probs=0.9
Q ss_pred HHHHHHhHHHHHHHcCCChhhHHHH--------------HHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhccccc---
Q 009617 358 INAVVYYSTSVFRSVGIESDVAASA--------------LVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLA--- 420 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 420 (531)
........+.+.+.++++....+.+ +.+...|..|-+.+-.+.++++++.+++.+........
T Consensus 19 ~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~ 98 (539)
T PF03137_consen 19 SGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence 3334444556666777766543333 33345565666777788889999988887654322110
Q ss_pred -----------------------------------CcchhHHHHHHHHHHHHHhcC---cccccccccccccChhhhhHH
Q 009617 421 -----------------------------------PYSGTLAVLGTVLYVLSFSLG---AGPVPALLLPEIFASRIRAKA 462 (531)
Q Consensus 421 -----------------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~ 462 (531)
.......+..+++.....+.+ ..++..+|+-|.++++..+..
T Consensus 99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splY 178 (539)
T PF03137_consen 99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLY 178 (539)
T ss_dssp -----------------------------------------------------SSS------------------------
T ss_pred cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccc
Confidence 000111122222222222222 456677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHh---------------------hc-cchhhHHHHHHHHHHHHHhheec
Q 009617 463 VALSLGMHWISNFVIGLYFLSVVNK---------------------FG-ISTVYLGFATVCLLAVLYIAVNV 512 (531)
Q Consensus 463 ~g~~~~~~~~g~~i~~~~~g~~~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~ 512 (531)
.|+..+...+|-++|=.+++...+. .| |...|++.+.+.++.++..+.+.
T Consensus 179 iGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP 250 (539)
T PF03137_consen 179 IGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP 250 (539)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999998888887776666544421 12 44456666666666655554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.03 Score=52.67 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhh-ccchhhhhhh--hHHHHHHHHHHH----------HhchHHHHHHHHHHHHhhhhhc
Q 009617 145 WIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLD--AVPLAAGAFLCA----------TAQSVQTMIIGRVLAGIGIGIS 211 (531)
Q Consensus 145 ~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~--~~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~~~~ 211 (531)
....+|.++-.+|..+.++.-=+ -.+|++++.+ =+++.-..++|. +.+|-+..++..++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888888877663211 1244444321 122222222331 2345567788889999999999
Q ss_pred cchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcc
Q 009617 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (531)
Q Consensus 212 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 252 (531)
...++.+..+..++++|..+-.+...+..+|..+|..++..
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888888888776543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.6 Score=44.76 Aligned_cols=123 Identities=12% Similarity=0.049 Sum_probs=77.0
Q ss_pred hHHHHHHhcCCCc--chhHHHHHHHH-HHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH---------Hhch
Q 009617 126 ALEYLAKDLGIAE--NTVLQGWIVSS-LLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---------TAQS 193 (531)
Q Consensus 126 ~~~~i~~~~~~s~--~~~~~~~~~s~-~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---------~~~~ 193 (531)
+.|.+..+-.-+. .....-++..+ |.+.-.+|.+.+.++-+.= ||+..+ ..++-.+..-++. +-.+
T Consensus 265 iFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i-~v~lR~lfiPlF~~cn~~~~~v~~~~ 342 (406)
T KOG1479|consen 265 IFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTI-PVLLRLLFIPLFLLCNYPPLPVVFES 342 (406)
T ss_pred ecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehH-HHHHHHHHHHHHHHhccCCCCceecC
Confidence 4565554443221 12222455555 7777777766555554433 333332 2332222222222 2356
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhh
Q 009617 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG 250 (531)
Q Consensus 194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~ 250 (531)
-+++++...+.|+..|=..+..+.+..+.++++++..+-.+.......|...|.+++
T Consensus 343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred chHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 677888999999999988888999999999999988877777777777777776664
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.6 Score=39.01 Aligned_cols=112 Identities=22% Similarity=0.175 Sum_probs=64.8
Q ss_pred HHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccCh-hhh
Q 009617 381 SALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS-RIR 459 (531)
Q Consensus 381 ~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~ 459 (531)
...+.+.||.|||+....+.....++.+...+... ......+......+.+.+ ...+....+..|..|. +.|
T Consensus 57 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 129 (338)
T COG0477 57 LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATER 129 (338)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHH
Confidence 56677789999997777666553444333332210 011222222222222222 3455666688888886 578
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhHHHHHh--hccchhhHHHHH
Q 009617 460 AKAVALSLG-MHWISNFVIGLYFLSVVNK--FGISTVYLGFAT 499 (531)
Q Consensus 460 ~~~~g~~~~-~~~~g~~i~~~~~g~~~~~--~g~~~~~~~~~~ 499 (531)
+...+.... ...++..++|.+.+.+... .+|+..+.....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (338)
T COG0477 130 GLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAAL 172 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 888888888 5777888888777666554 345554444433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=90.00 E-value=2.2 Score=30.34 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=32.5
Q ss_pred hhHHHHHHhHHHHHHHcCCChhhHHHH--------------HHHHhhhcCccHHHHHHhHH
Q 009617 356 AGINAVVYYSTSVFRSVGIESDVAASA--------------LVGAANVFGRKNLLTFSFTG 402 (531)
Q Consensus 356 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~gr~~~~~~~~~~ 402 (531)
.......-|.+.+.++.|++....+.+ .+.++||.++++........
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 345556667777888899988754444 34469999998887765443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.41 Score=46.27 Aligned_cols=128 Identities=12% Similarity=-0.103 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcC
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 223 (531)
.|-..++.+...+.+....++.+|+|-|+.++.+...+.++.-+.+..++.+.....|-..|+-.+....+-...++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 45566677777799999999999999888888888778888888888888888888888888555544444333333211
Q ss_pred ---------------------Cc--cccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHH
Q 009617 224 ---------------------PT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271 (531)
Q Consensus 224 ---------------------~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~ 271 (531)
.+ ..+|...|+.+....+-+++..+..|.+.+...+=+.+-...+.++
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s 485 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVA 485 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHH
Confidence 11 1236667777777777776666666665543333344433444433
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=89.01 E-value=15 Score=32.16 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhh---hhccchhhhhhhhHHHHHHHH
Q 009617 145 WIVSSLLAGATVGSFTGGSLA---DKFGRTRTFQLDAVPLAAGAF 186 (531)
Q Consensus 145 ~~~s~~~~~~~i~~~~~g~l~---dr~Grr~~~~~~~~~~~~~~~ 186 (531)
+.......++.+|..+.+.+. ++..+|+.....+.+-.+..+
T Consensus 50 ~~~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~ 94 (209)
T PF06912_consen 50 LRYLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLL 94 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 333444455566666666662 334444444444444444333
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=11 Score=38.54 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHH-hhccchhhHHHHHHHHHHHHHh
Q 009617 459 RAKAVALSLGMHWISNFVIGLYFLSVVN-KFGISTVYLGFATVCLLAVLYI 508 (531)
Q Consensus 459 ~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~ 508 (531)
.+...|-.+.+..+|+++|+.+.+.+.- ..|......+.+.+.++.+++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4667888888899999999999887764 5776656556665555554433
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.34 E-value=19 Score=37.09 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=78.5
Q ss_pred HHHHhhhc-CccHHHHHHhHHHHHHHHHHHHHhhcccccC---------------cchhHHHHHHHHHHHH-HhcCcccc
Q 009617 383 LVGAANVF-GRKNLLTFSFTGMAASMLLLSLSFTWKVLAP---------------YSGTLAVLGTVLYVLS-FSLGAGPV 445 (531)
Q Consensus 383 ~~~~~~~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~~~ 445 (531)
.+.++|.+ ||-+++.++.++..++++++.+........+ ......++...+.... ...+.-|.
T Consensus 93 g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~ 172 (571)
T KOG1237|consen 93 GAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPC 172 (571)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCc
Confidence 34456754 8888888888888888776665443221110 1111122222222222 22345566
Q ss_pred cccccccccC----hhhhh--HHHHHHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhh
Q 009617 446 PALLLPEIFA----SRIRA--KAVALSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIA 509 (531)
Q Consensus 446 ~~~~~~~~~p----~~~~~--~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 509 (531)
..++-+|.++ .+.+. .-+.......++|..++-.+.-++.+..||...|.+..++.+++.++.+
T Consensus 173 ~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 173 LLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred chhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 6668888887 22223 5566777777888888888888877888999888888777777666544
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=85.06 E-value=3.6 Score=36.90 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhh-ccchhhhh----hhhHHHHHHHHHHHH-h----chHHHHHHHHHHHHhhhhhccc
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQ----LDAVPLAAGAFLCAT-A----QSVQTMIIGRVLAGIGIGISSA 213 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~~~~~~ 213 (531)
....-++..|+.+|.+..|+.... +-||+.+. .+++++.+..++.+. . .++..+++.-|+.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 445566777778888888888875 45555443 334444444444211 1 1355677777888877533333
Q ss_pred hhhhhhhhcCCccccchhHHHHHHHHHHHHH
Q 009617 214 IVPLYISEISPTEIRGALGSVNQLFICVGIL 244 (531)
Q Consensus 214 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 244 (531)
+.. .+..-++..++.+.--.+...+++|.+
T Consensus 224 ViL-~lPhEyK~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 224 VIL-NLPHEYKGYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred HHh-cChhhhcCCCcceehhHHHHHHHHHHH
Confidence 332 333333333333333334455566644
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.95 E-value=2.8 Score=38.49 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=80.9
Q ss_pred HhcCCCc-chhHHHHHHHHHHHHHHHHHHhHHhhhhhccc-hhh-----hhhhhHHHHHHHHHHHHhchHHHHHHHHHHH
Q 009617 132 KDLGIAE-NTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRT-----FQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (531)
Q Consensus 132 ~~~~~s~-~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 204 (531)
+.+..+. .|+ -|....|.+|-.+. +=+-|+=+ +.. +.+-.+++.+...+..+.++++..++.-+.-
T Consensus 280 ~g~sls~~sqY--RwyqvlYQlGVFiS-----RSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~E 352 (409)
T KOG3880|consen 280 HGFSLSKDSQY--RWYQVLYQLGVFIS-----RSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFE 352 (409)
T ss_pred cCCccchhhcc--hhhheeeeeeEEEE-----eccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444443 346 78888888874332 22222212 111 1222334455556667789999999999999
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhccc
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL 253 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 253 (531)
|+-.|..++...--+.+-.++++|-.+++....+-.+|..++.+++-.+
T Consensus 353 GLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 353 GLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred hhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 9988989988888888888889999999999999999999888887655
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.73 E-value=23 Score=33.43 Aligned_cols=94 Identities=22% Similarity=0.172 Sum_probs=60.1
Q ss_pred hHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccch-hhh---hhhhH---HHHHHHHHHHH--hchHH
Q 009617 126 ALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT-RTF---QLDAV---PLAAGAFLCAT--AQSVQ 195 (531)
Q Consensus 126 ~~~~i~~~~-~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr-~~~---~~~~~---~~~~~~~~~~~--~~~~~ 195 (531)
.+..+...+ |-.--|. +++++.|.....+|+...-++.|.--.- -+. +.|++ -..+..+.+++ .++-+
T Consensus 29 al~tLatyLlG~~Ilq~--S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~ 106 (508)
T COG4262 29 ALGTLATYLLGGGILQT--SLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRL 106 (508)
T ss_pred HHHHHHHHhcCCceeeh--HHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHH
Confidence 444555555 4444455 9999999999999999888887743222 211 11111 11111222222 24566
Q ss_pred HHHHHHHHHHhhhhhccchhhhhhhh
Q 009617 196 TMIIGRVLAGIGIGISSAIVPLYISE 221 (531)
Q Consensus 196 ~l~~~r~l~G~~~~~~~~~~~~~i~~ 221 (531)
.+++.-++.|.-.|+-.|..+.++..
T Consensus 107 Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 107 VLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 78888899999999999999988876
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.68 E-value=13 Score=35.29 Aligned_cols=161 Identities=14% Similarity=-0.025 Sum_probs=76.9
Q ss_pred HHHHHHHhhHhHHhhhhhHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHH
Q 009617 109 ACLGAILFGYHLGVVNGALEYLAKDLGI-AENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL 187 (531)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 187 (531)
+++++++.....-...........+++- +-.-. +.-.-.-.....+..++.|...|+..|+|++...+++--++...
T Consensus 32 Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lv--Avyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v 109 (503)
T KOG2601|consen 32 LYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLV--AVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV 109 (503)
T ss_pred hhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhH--HHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence 3445554444444444555545555543 21111 22222222334466677788889999999987776654332222
Q ss_pred ------HHHh------chHHHHHHHHHHHHhhhhh--ccchhhhh--hhhcC----Cccccc---hhHHHHHHHHHHHHH
Q 009617 188 ------CATA------QSVQTMIIGRVLAGIGIGI--SSAIVPLY--ISEIS----PTEIRG---ALGSVNQLFICVGIL 244 (531)
Q Consensus 188 ------~~~~------~~~~~l~~~r~l~G~~~~~--~~~~~~~~--i~~~~----~~~~r~---~~~~~~~~~~~~G~~ 244 (531)
..+. .++..+..+-++.-...+. ....+..+ --||. ..+.+. +..+..-..-..-..
T Consensus 110 agglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~ 189 (503)
T KOG2601|consen 110 AGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNL 189 (503)
T ss_pred HHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhc
Confidence 2222 2455554444433322211 11111111 12443 222232 233444444455567
Q ss_pred HHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 245 AALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 245 ~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
+.|++.|.+... .+-|..-.+.++...
T Consensus 190 Lapv~tg~Iitf-vsl~~~~g~f~~w~~ 216 (503)
T KOG2601|consen 190 LAPVITGLIITF-VSLRASAGTFAAWAL 216 (503)
T ss_pred hhhhhhccccee-echhhhhhhhHHHHH
Confidence 888888887743 556655444444443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.58 E-value=10 Score=35.71 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhhhccch--hhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhh
Q 009617 141 VLQGWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLY 218 (531)
Q Consensus 141 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 218 (531)
...|..-++..+..+++.+..|.+--++.|+ ..+.++...-+...++++.+++.|..+++.++.+.-.....+.+...
T Consensus 271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~ 350 (433)
T KOG3810|consen 271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQ 350 (433)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHH
Confidence 3446777778888899999999998877665 34445555666666778888999999999988888888888888888
Q ss_pred hhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 219 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
+++....+.-|..+|+.... +.++-.++.....+
T Consensus 351 iA~nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd 384 (433)
T KOG3810|consen 351 IARNLSSELFGLVFGINTFV---ALILQSILTLIVVD 384 (433)
T ss_pred HHHhhhhhhheeeeehHHHH---HHHHHHhheEEEEc
Confidence 88888887778888886643 34455555544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 531 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 5e-38 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 531 | |||
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 4e-06 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 5e-04 |
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 14/165 (8%)
Query: 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185
A+ +A+DL + E V ++ + L V G ++D+ GR +
Sbjct: 22 AIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79
Query: 186 FLCATAQSVQTMIIGRVLAGIGIG----ISSAIVP-LYISEISPTEIRGALGSVNQLFIC 240
+ T S+ +I + G+G G ++ + LY T++R A +N +
Sbjct: 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY----ERTQLRHANSLLNMGILV 135
Query: 241 VGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS-PES 284
+LA L+ GL WR + + + M PE+
Sbjct: 136 SPLLAPLIGGLLDT--MWNWRACYLFLLVLCAGVTFSMARWMPET 178
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 13/156 (8%)
Query: 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRTFQLDAVPLAA 183
YL + A + W G+ G ++DK G T F + V +A
Sbjct: 278 YLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335
Query: 184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI 243
+ A + +I ++ G I ++ L+ E++P + A G+ G
Sbjct: 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP---KKAAGTAAGFTGLFGY 392
Query: 244 LAALVAGLPLAG---NPLWWRTMFGLAAIPSILLAL 276
L VA + G + W F + SIL +
Sbjct: 393 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 428
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.98 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.53 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.37 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.36 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.33 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.22 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.93 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=365.59 Aligned_cols=423 Identities=33% Similarity=0.580 Sum_probs=332.0
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcc------hhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhh
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAEN------TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~------~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 173 (531)
++.+.+.++.+++.+..++|.+.++..+|.+.++++.+.. ....|++.+++.+|..++++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4556677777888999999999999999999998854321 1234899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHH------------------HhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHH
Q 009617 174 FQLDAVPLAAGAFLCA------------------TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235 (531)
Q Consensus 174 ~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 235 (531)
++++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999998 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCC-------CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCcc
Q 009617 236 QLFICVGILAALVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKE 308 (531)
Q Consensus 236 ~~~~~~G~~~g~~~~~~l~~-------~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (531)
+.+..+|.++++.++..+.. ...+||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++...++
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 99999999998888766542 12579999999898888888888999999999999999999988887765544
Q ss_pred chHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhh----------
Q 009617 309 RVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV---------- 378 (531)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------- 378 (531)
...++..+.++..+..+ +.......++. +...+......+.++.+.....+|.+.+.+..+.....
T Consensus 248 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 248 LATQAVQEIKHSLDHGR-KTGGRLLMFGV---GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTHHHHSCC---THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhh-hhhhHHHHhcc---cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence 33333222222111111 11111222222 23344445556666777888888999988887776542
Q ss_pred ----HHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCccccccccccccc
Q 009617 379 ----AASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIF 454 (531)
Q Consensus 379 ----~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (531)
.......+.||+|||+.++.+...+.++++.+....... ......++..+++..++..+..++.+.+.+|++
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f 399 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF 399 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 122333458999999999999888888887776554322 234445555666667777788888888999999
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH------hhccchhhHHHHHHHHHHHHHhheecccCCCCCHHHHHHhhC
Q 009617 455 ASRIRAKAVALSLGMHWISNFVIGLYFLSVVN------KFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALN 528 (531)
Q Consensus 455 p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (531)
|++.|++++|+.+.++.+++++++.+.+.+.+ ..+....|++++++++++.++.++++||||+|++||+|+.+|
T Consensus 400 Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 400 PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 99999999999999999999999888776543 345667888999999999999999999999999999999988
Q ss_pred CC
Q 009617 529 PV 530 (531)
Q Consensus 529 ~~ 530 (531)
++
T Consensus 480 ~~ 481 (491)
T 4gc0_A 480 PE 481 (491)
T ss_dssp --
T ss_pred CC
Confidence 53
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=309.54 Aligned_cols=386 Identities=13% Similarity=0.090 Sum_probs=279.8
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhH
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 179 (531)
+..+..+..+++..+..+++...+.+.+|.+.+++ .+..+. |++.+++.+++.++++++|+++||+|||++++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34566777788888889999999999999999999 999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 180 PLAAGAFLCAT----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 180 ~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
+++++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|++++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCch-hHHHHHHhHHHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhh
Q 009617 256 NPLW-WRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFD 333 (531)
Q Consensus 256 ~~~g-wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (531)
. .| ||+.|++.+++.++..+ ..+++||+|+....+++++.. +. .+.. ..+++++....++...++
T Consensus 181 ~-~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~-~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 181 W-FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK---------ND--YPDD-YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp H-TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC---------CC----------------CCTHHHHHH
T ss_pred H-hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc---------cc--cccc-chhhhhcccccccchHHH
Confidence 3 66 99999999988866544 445678877632111111000 00 0000 000000011111111456
Q ss_pred hhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhH--------------HHHHHHHhhhc--CccHHH
Q 009617 334 LFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--------------ASALVGAANVF--GRKNLL 396 (531)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--------------~~~~~~~~~~~--gr~~~~ 396 (531)
+++++..+...+...+... .......+.+.++++ .|++.... ....+.+.||+ +||+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 6666655554444333322 244455566666665 67776522 22334468999 998888
Q ss_pred HHHhHHHH-HHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHH-HH
Q 009617 397 TFSFTGMA-ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWI-SN 474 (531)
Q Consensus 397 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~ 474 (531)
..+.++.. ++.+++.+. ...+.+...+..++.+.+.. ...+....+..|.+|++.|++++|+.+.+.++ |.
T Consensus 324 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMN------PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp HHHHHHHHHHHHHHTTSC------CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------cccCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 77665555 444433221 11122333333333333332 33445556889999999999999999999999 99
Q ss_pred HHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheec
Q 009617 475 FVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNV 512 (531)
Q Consensus 475 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 512 (531)
+++|.+.|.+.+..|+...|.+.+++.+++.++.+...
T Consensus 397 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888877776665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=290.77 Aligned_cols=356 Identities=16% Similarity=0.130 Sum_probs=269.5
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
+..+..+++..+..+++....++..|.+.+++|++..+. |++.+++.+++.++++++|+++||+|||++++++.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 445556677778888888899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC-CCCc
Q 009617 183 AGAFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-GNPL 258 (531)
Q Consensus 183 ~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~ 258 (531)
++.+++ +++++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++++++++.+. +...
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 889999999999999999999999999999999999999999999999999999999999999987 4422
Q ss_pred h------------------------hHHHHHHhHHHHHHHHHHhcc--cccchhHHHHhCChHHHHHHHHHHhCccchHH
Q 009617 259 W------------------------WRTMFGLAAIPSILLALGMGL--SPESPRWLFQQGKKSEAEKSIQTLYGKERVSE 312 (531)
Q Consensus 259 g------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (531)
. ||+.|++.+++.++..+..++ .||+++.. +++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~------------------ 241 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSD------------------ 241 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCC------------------
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccc------------------
Confidence 2 999998888777655544433 35544310 000
Q ss_pred HHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHHc-CCChhhH-----------
Q 009617 313 VMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FRSV-GIESDVA----------- 379 (531)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~----------- 379 (531)
+++++.+.+++++++++..+...+...+.... ......+.+.+ .++. |++....
T Consensus 242 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 308 (438)
T 3o7q_A 242 ---------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCF 308 (438)
T ss_dssp ---------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred ---------ccccchhhhHHHHHhChHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHH
Confidence 01112233456777777776665554444332 33444455555 5554 7776522
Q ss_pred ---HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccCh
Q 009617 380 ---ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS 456 (531)
Q Consensus 380 ---~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 456 (531)
....+.+.||+|||+.+..+.++.+++.+++.+. .....++...+.+.+.+ ...+....+..|.+|+
T Consensus 309 ~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 309 FIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHT-THHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Confidence 2233446899999999998888877776666542 12223333344444433 3456677687888886
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhHHHHHHHHHHHH
Q 009617 457 RIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVL 506 (531)
Q Consensus 457 ~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~ 506 (531)
+ ++.+.++.. ...++++++|.+.|.+.+..| +...|.+.+++.++..+
T Consensus 379 ~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 379 D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 6 888888877 678999999999999999999 88888876655544444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.6e-31 Score=264.87 Aligned_cols=386 Identities=13% Similarity=0.027 Sum_probs=238.1
Q ss_pred hhhHHHHHHh-----cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh-ccchhhhhhhhHHHHHHHHHHHHhchHHHH
Q 009617 124 NGALEYLAKD-----LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQTM 197 (531)
Q Consensus 124 ~~~~~~i~~~-----~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (531)
....+++.++ +|.+..+. +++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL 111 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred HHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3455666666 99999999 999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccchhhhhhhhcCCccc--cchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHH
Q 009617 198 IIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (531)
Q Consensus 198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~ 275 (531)
+++|+++|++.+...+...++++|++|+++ |+.++++++.+.++|.+++|.+++.+.+. .|||+.|++.++..++..
T Consensus 112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-AGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 77788889999999999999999998754 789999999877766555
Q ss_pred HHhccc-ccchh----HHHHhCChHHHHHHHHH----------------HhCccchHHHHHH---------HHHhccCCC
Q 009617 276 LGMGLS-PESPR----WLFQQGKKSEAEKSIQT----------------LYGKERVSEVMLD---------LTNAGQGSA 325 (531)
Q Consensus 276 ~~~~~~-~e~~~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---------~~~~~~~~~ 325 (531)
+..++. ++..+ ....+.+.++..+..+. ..+..+.+..... ........+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (491)
T 4aps_A 191 LVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMIS 270 (491)
T ss_dssp HHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhh
Confidence 444332 21110 00001111222221111 0000000000000 000000000
Q ss_pred CCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCC---h-----------hhHHHHHHHHhhhc
Q 009617 326 EPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIE---S-----------DVAASALVGAANVF 390 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~---~-----------~~~~~~~~~~~~~~ 390 (531)
.++....+..+.................. .....+.+.+..+ .+.+ . .......+.+.||+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 346 (491)
T 4aps_A 271 SVKVTSTEHLRVVSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW 346 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 00000011111111222222222222221 1122223333332 3333 1 12334445578999
Q ss_pred CccHHHH-----HHhHHHHHHHHHHHHHhhccc-ccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHH
Q 009617 391 GRKNLLT-----FSFTGMAASMLLLSLSFTWKV-LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 464 (531)
Q Consensus 391 gr~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 464 (531)
+||+... .+.++.+++++++........ ....+.+......++.+.+.+ ...+....++.|.+|++.|+++.|
T Consensus 347 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g 425 (491)
T 4aps_A 347 KKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMS 425 (491)
T ss_dssp TTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTH
T ss_pred hccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHH
Confidence 9986544 555555555555544321111 011123333333444444433 345566679999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccCCCC
Q 009617 465 LSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 518 (531)
Q Consensus 465 ~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (531)
+.+....+|.+++|.+.+.+.+ .++...|...+++++++.++.+.+.++.+++
T Consensus 426 ~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 426 MWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888754 4667788888888888777766666655443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=260.52 Aligned_cols=345 Identities=16% Similarity=0.105 Sum_probs=245.2
Q ss_pred HHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHH
Q 009617 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (531)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 186 (531)
..+++..+...++...+.+.+|.+.+++|.+..+. +++.+++.+++.++++++|+++||+|||+++..+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 44566777788888899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHH
Q 009617 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (531)
Q Consensus 187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~ 266 (531)
+.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+. .+||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998854 699999999
Q ss_pred hHHHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHH
Q 009617 267 AAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (531)
Q Consensus 267 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (531)
.+++.++..+ ..+++||+++.. ++ +++.+.+++++++++..+...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD---AP------------------------------RTRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT---CC------------------------------CCCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC---cc------------------------------cccHHHHHHHHhcCcchHHHHH
Confidence 9888876665 445567776421 00 0112345566777665555444
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhHH----------HHHHHHhhhcCccH--HHHHHhHH-HHHHHHHHH
Q 009617 346 GAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVAA----------SALVGAANVFGRKN--LLTFSFTG-MAASMLLLS 411 (531)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~----------~~~~~~~~~~gr~~--~~~~~~~~-~~~~~~~~~ 411 (531)
...+.... ......+.+.+.++ .|.+....+ .....+.+++.+|. ....+... ...+...+.
T Consensus 207 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~ 282 (375)
T 2gfp_A 207 MLIGGLAG----IAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWI 282 (375)
T ss_dssp HHHHHHHH----HHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333222 23333333333322 444433211 11122234443332 22222222 122221111
Q ss_pred HHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Q 009617 412 LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIS 491 (531)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~ 491 (531)
.... ...+.+...+..++.+.+.+. ..+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+..++.
T Consensus 283 ~~~~----~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 356 (375)
T 2gfp_A 283 PDWF----GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGS 356 (375)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHH
T ss_pred Hhhh----ccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 1100 000222233334444444443 45566668889998 88999999999999999999999999998877766
Q ss_pred hhhHHH
Q 009617 492 TVYLGF 497 (531)
Q Consensus 492 ~~~~~~ 497 (531)
..+.+.
T Consensus 357 ~~~~~~ 362 (375)
T 2gfp_A 357 LGLLMT 362 (375)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=243.63 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=137.7
Q ss_pred hhHHHHHHhcC------CCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-cchhhhhhhhHHHHHHHHHHHHhc-hHHH
Q 009617 125 GALEYLAKDLG------IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQT 196 (531)
Q Consensus 125 ~~~~~i~~~~~------~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~ 196 (531)
...+++.+++| .+..+. +++.+++.++..++++++|+++||+ |||+++.++.++++++.+++++++ +++.
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG 111 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 34566788899 999999 9999999999999999999999999 999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHH---HHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHH
Q 009617 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV---NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (531)
Q Consensus 197 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~ 273 (531)
+++.|++.|++.+...+...+++.|++|+++|+++.+. +..+.++|.+++|.+++.+.+. .|||+.|++.+++.++
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877666 8899999999999999988744 6899999998888766
Q ss_pred HHHHhcc
Q 009617 274 LALGMGL 280 (531)
Q Consensus 274 ~~~~~~~ 280 (531)
..+..++
T Consensus 191 ~~~~~~~ 197 (524)
T 2xut_A 191 ATVFFWL 197 (524)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 5554433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-29 Score=244.47 Aligned_cols=359 Identities=14% Similarity=0.055 Sum_probs=221.9
Q ss_pred HHhhhhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHH---HHHHHhchH-
Q 009617 120 LGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA---FLCATAQSV- 194 (531)
Q Consensus 120 ~~~~~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~- 194 (531)
.....+.+|. +++++|.+..+. |++.+++.+++.++++++|+++||+|||++++++..+++++. ..+++++..
T Consensus 23 ~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2cfq_A 23 MGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554 667799999999 999999999999999999999999999999998888776532 222333322
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCCc--cccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
..++..+++.|++.+..++.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..+
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCAL 178 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHH
Confidence 1244566676666655555545555555443 345777888877888899999999988864 579999998877765
Q ss_pred HHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHH
Q 009617 273 LLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLF 352 (531)
Q Consensus 273 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (531)
+..+..++.+|+++. +.+.++ .+ +.+.++....+++++++++..+...+.......
T Consensus 179 ~~~~~~~~~~~~~~~---~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T 2cfq_A 179 ILAVLLFFAKTDAPS---SATVAN----------AV-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp THHHHSCSSCCCCSC---SSCSSS----------SS-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccccc---cccccc----------cc-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 555555555443321 000000 00 000001111234556666655444333222211
Q ss_pred HHhhhHHHHHHhHHHHHHH-cCC---Ch--------------hhHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHh
Q 009617 353 QQLAGINAVVYYSTSVFRS-VGI---ES--------------DVAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSF 414 (531)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~-~g~---~~--------------~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 414 (531)
. +.....+.+.++.+ .+. +. .......+.++||+|||+.+..+.++.+++.+++.+.
T Consensus 235 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~- 309 (417)
T 2cfq_A 235 T----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA- 309 (417)
T ss_dssp H----HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred H----HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-
Confidence 1 11221222322222 111 01 0122333456899999999887777766655444321
Q ss_pred hcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHhhccchh
Q 009617 415 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS-LGMHWISNFVIGLYFLSVVNKFGISTV 493 (531)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~g~~~~~~g~~~~ 493 (531)
. +.+..++...+...+.. ...+....++.|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...
T Consensus 310 ------~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 310 ------T-SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp ------C-SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred ------c-cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 1 22222222222222222 12223355889999999999999994 888899999999999999998888888
Q ss_pred hHHHHHHHHHHHHHhheecccCCCCC
Q 009617 494 YLGFATVCLLAVLYIAVNVVETKGRS 519 (531)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (531)
|.+.+++++++.++.+...+|+++.+
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 88888888888777666666655543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-14 Score=138.97 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=132.7
Q ss_pred HHhhhhhHHHHHHh-cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--cchhhhhhhhHHHH-HHHHHHHHh--ch
Q 009617 120 LGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQLDAVPLA-AGAFLCATA--QS 193 (531)
Q Consensus 120 ~~~~~~~~~~i~~~-~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~ 193 (531)
........|.+.++ +|.+..+. +++.+.+.++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+
T Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (451)
T 1pw4_A 268 RYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN 345 (451)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccC
Confidence 33444455655555 89999888 9999999999999999999999999 99999988877776 666666665 36
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHH-HHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
.+.+++..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+. .||+..|++.+++.+
T Consensus 346 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSI 424 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHH
Confidence 777888889999998888888899999999999999999999999999 999999999988754 689999999888877
Q ss_pred HHHHHhcc
Q 009617 273 LLALGMGL 280 (531)
Q Consensus 273 ~~~~~~~~ 280 (531)
+..+..++
T Consensus 425 ~~~~~~~~ 432 (451)
T 1pw4_A 425 LAVILLIV 432 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=126.66 Aligned_cols=148 Identities=13% Similarity=0.007 Sum_probs=122.3
Q ss_pred hHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHH
Q 009617 126 ALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (531)
Q Consensus 126 ~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 204 (531)
..++ +.+.+|.+..+. ++..+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++.. ++.
T Consensus 281 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 357 (438)
T 3o7q_A 281 LIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLC 357 (438)
T ss_dssp HHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHH
T ss_pred HHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHH
Confidence 3344 555569999988 999999999999999999999999999999999999999999998888887765544 888
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch-hHHHHHHhHHHHHHHHHHhc
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g-wr~~f~~~~~~~~~~~~~~~ 279 (531)
|++.+..++....++.|.+|++ ++.+.++.. ...+|..++|.+.+.+.+. .| ++..|++.++..++..+..+
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-AGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-HTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 888888777 5568999999999998854 56 88888876665554444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-13 Score=129.86 Aligned_cols=142 Identities=10% Similarity=0.036 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcC
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 223 (531)
++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77888888888999999999999999999999999888888888888888888888888888887777777788999999
Q ss_pred CccccchhHHH-HHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc-ccccchh
Q 009617 224 PTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-LSPESPR 286 (531)
Q Consensus 224 ~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~e~~~ 286 (531)
|++.|+.+.++ ++....+|.+++|.+++.+.+. .|++..|.+.+++.++..+..+ +.+|+++
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999998 4778889999999999988753 6789999888888766655443 4565443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.8e-12 Score=125.82 Aligned_cols=153 Identities=13% Similarity=0.022 Sum_probs=121.8
Q ss_pred hhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhh-----hhhHHHHHHHHHHHHhc-----
Q 009617 124 NGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-----LDAVPLAAGAFLCATAQ----- 192 (531)
Q Consensus 124 ~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-----~~~~~~~~~~~~~~~~~----- 192 (531)
...++ +..+.++.+..+. +++.+...++..++.++.|++.||+|||+... .+.++.+++.++.++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred cHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444 4455577776666 88888899999999999999999999987665 77777777776666543
Q ss_pred ----hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 193 ----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 193 ----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
+.+.+++.-++.|++.+...+....++.|.+|++.|+++.++......+|..+++.+.+.+.+ .++.+.|++.+
T Consensus 381 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~~~ 458 (491)
T 4aps_A 381 SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--KSEVAYFSYFG 458 (491)
T ss_dssp CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG--SSTTHHHHHTH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 677788888999999999899999999999999999999999999999999999999998875 45677888888
Q ss_pred HHHHHHHHHhcc
Q 009617 269 IPSILLALGMGL 280 (531)
Q Consensus 269 ~~~~~~~~~~~~ 280 (531)
+++++..+..++
T Consensus 459 ~~~~~~~~~~~~ 470 (491)
T 4aps_A 459 LGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777665554444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=116.07 Aligned_cols=165 Identities=18% Similarity=0.069 Sum_probs=117.4
Q ss_pred HHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh-----chH
Q 009617 120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSV 194 (531)
Q Consensus 120 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~ 194 (531)
........+.+.++.+.+.... ........+...++.++.+++.||+|||+.++.+....+++.+..+.. ++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 3344446677888888887776 677777788888999999999999999999999988888877665543 122
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC-----CchhHHHHHHhHH
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-----PLWWRTMFGLAAI 269 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-----~~gwr~~f~~~~~ 269 (531)
..++..-+..+.......+....+.+|.+|.+.|++++++......+|.++++.+...+.+. ..++.+.|++.++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 22222222222222224466778999999999999999999999999988888776655421 1345567788888
Q ss_pred HHHHHHH-Hhcccccchh
Q 009617 270 PSILLAL-GMGLSPESPR 286 (531)
Q Consensus 270 ~~~~~~~-~~~~~~e~~~ 286 (531)
++++..+ .++++||+..
T Consensus 451 ~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHheecCCCC
Confidence 7766555 4466899864
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-10 Score=112.31 Aligned_cols=139 Identities=16% Similarity=0.113 Sum_probs=106.3
Q ss_pred hhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHH-HHHHHH--HHHH--hchHHHH
Q 009617 124 NGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP-LAAGAF--LCAT--AQSVQTM 197 (531)
Q Consensus 124 ~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~l 197 (531)
....|. +++++|.+..+. +++.+...++..++.++.+++.||+|++.. .+..+ ..++.. .... .++.+.+
T Consensus 219 ~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T 2gfp_A 219 EACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTL 294 (375)
T ss_dssp HHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHH
Confidence 334444 455588888888 999999999999999999999999988332 23222 222221 2222 2467777
Q ss_pred HHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
++..++.|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+. .+|+..+++.+
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~ 363 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT-GQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccHHHHHHH
Confidence 888899999999999999999999998 7899999999999999999999998887643 56777776543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-08 Score=103.46 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=89.3
Q ss_pred HHHHhhhc-CccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhH
Q 009617 383 LVGAANVF-GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 461 (531)
Q Consensus 383 ~~~~~~~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 461 (531)
.+.++||+ |||+.+..+.++.+++.+++.+.. .+.+..++..++.+.+.+ ...+...+++.|.+|+++|+.
T Consensus 74 ~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~ 145 (524)
T 2xut_A 74 GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-------HSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSL 145 (524)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-------SCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHH
Confidence 34469999 999999999888888887776531 022333344444444433 345666678999999999977
Q ss_pred HHHH---HHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhhe
Q 009617 462 AVAL---SLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 462 ~~g~---~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 510 (531)
+.+. .+...++|.+++|.+.+.+.+..||+..|.+.+++.+++.++.+.
T Consensus 146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 899999999999999999999899999999888777666655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 531 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-16 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-09 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 5e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 78.6 bits (192), Expect = 3e-16
Identities = 53/427 (12%), Positives = 116/427 (27%), Gaps = 12/427 (2%)
Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
G + A+ YL + G + + G+ +S + F GS++
Sbjct: 27 FLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVS 83
Query: 166 DKFGRTRTFQLDAVPLAAGAFLC----ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221
D+ + AA S+ M + L G G+ +
Sbjct: 84 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143
Query: 222 ISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS 281
+ RG + SV VG + L W + A +IL+AL
Sbjct: 144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203
Query: 282 PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK 341
E + Y ++ E+ + + + +
Sbjct: 204 MRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL 263
Query: 342 VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGRKNLLTFSFT 401
+ + + S+ + ++ R N
Sbjct: 264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 323
Query: 402 GMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 461
M + + + P + ++ + G + L E+ +
Sbjct: 324 FMTLVTIATIVYWMN----PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 379
Query: 462 AVALSLGMHWISNFVIGLYFLS-VVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSL 520
A + ++ V + V+ FG ++ +LAV+ + V ++ K R
Sbjct: 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 439
Query: 521 EEIERAL 527
+ ++ +
Sbjct: 440 QLLQELV 446
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 56.7 bits (135), Expect = 3e-09
Identities = 47/422 (11%), Positives = 99/422 (23%), Gaps = 29/422 (6%)
Query: 110 CLGAILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF 168
L + + +G +L I+++ G I +++ + + G L+DK
Sbjct: 13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKL 70
Query: 169 GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIG-----ISSAIVPLYISEIS 223
G + + + ++ I G +A P + I
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130
Query: 224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283
R A + + + + + IL L +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190
Query: 284 SPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVV 343
+P + E + F S Y V
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQ------------------PKLWFLSLYVIGV 232
Query: 344 SVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGRKNLLTFSFTGM 403
S +F Q + R G + + +
Sbjct: 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL 292
Query: 404 AASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAV 463
+ ++S+ A + + +L T+ + F R A
Sbjct: 293 LLAGTIMSVRIIGSSFATSALEVVILKTLHMF--EVPFLLVGCFKYITSQFEVRFSATIY 350
Query: 464 ALSLGM-HWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEE 522
+ ++ + + ++ G YL V L L + SL
Sbjct: 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
Query: 523 IE 524
+
Sbjct: 411 RQ 412
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 40.1 bits (92), Expect = 5e-04
Identities = 26/290 (8%), Positives = 72/290 (24%), Gaps = 2/290 (0%)
Query: 1 MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRAT 60
+ R+ ++ + + A
Sbjct: 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178
Query: 61 QGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHL 120
LF + S A+A + A + + + + Y +
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238
Query: 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180
A + + + T + G++ + F + ++ G L
Sbjct: 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298
Query: 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFI 239
++ + A S ++I + L + YI+ F
Sbjct: 299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358
Query: 240 CVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF 289
+ ++ V + + + ++ + + + ++ L + P L
Sbjct: 359 QLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.5 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.4 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-37 Score=306.77 Aligned_cols=395 Identities=13% Similarity=0.050 Sum_probs=269.2
Q ss_pred ccCcchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhh
Q 009617 97 KSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176 (531)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 176 (531)
..++.+|.++..++++.+..++++..++.+.|.++ |+|+|.++. |++.+++.+++.++++++|+++||+|||+++.+
T Consensus 18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 33445678888888888899888888888899875 689999999 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh----chHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcc
Q 009617 177 DAVPLAAGAFLCATA----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP 252 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 252 (531)
++++.+++.++++++ ++++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|.++++++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 95 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence 999999999998876 4788899999999999999999999999999999999999999999999999999998887
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHh-cccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccch
Q 009617 253 LAGNPLWWRTMFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW 331 (531)
Q Consensus 253 l~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (531)
+.....+||+.|++.+++.++..+.. ++.+|+|+.......++... +......++.+++...++...
T Consensus 175 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 242 (447)
T d1pw4a_ 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN------------DYPDDYNEKAEQELTAKQIFM 242 (447)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC------------C-------------CCTHHHH
T ss_pred HhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh------------hcccchhhccccccchhhHHH
Confidence 66544689999999988886655544 44566554321111110000 000000011111122223334
Q ss_pred hhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCChh--------------hHHHHHHHHhhhcCccHHH
Q 009617 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVF-RSVGIESD--------------VAASALVGAANVFGRKNLL 396 (531)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~--------------~~~~~~~~~~~~~gr~~~~ 396 (531)
+..++++..+.......+.... ......+.+.++ +..+.+.. ......+.+.||++|++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 318 (447)
T d1pw4a_ 243 QYVLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 318 (447)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHcCchHHHHHHHhhhhhhh----hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc
Confidence 5556655544443333222221 233344444444 34455544 2233334468999887655
Q ss_pred HHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHH-HH
Q 009617 397 TFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWIS-NF 475 (531)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~~ 475 (531)
........+.......... ....+.+..++..++.+++ ..+..+....+..|.+|++.||++.|+.+.+++++ .+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~ 394 (447)
T d1pw4a_ 319 ATGVFFMTLVTIATIVYWM---NPAGNPTVDMICMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 394 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTS---CCTTCHHHHHHHHHHHHHH-HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHh---cccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5444433333333222211 1111233333333333332 23344556668899999999999999999998875 56
Q ss_pred HHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheeccc
Q 009617 476 VIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVE 514 (531)
Q Consensus 476 i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (531)
++|.+.|.+.+..|+...|.+.+++++++.++.+.+.++
T Consensus 395 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 395 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999888888777777666554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.2e-27 Score=232.54 Aligned_cols=374 Identities=15% Similarity=0.033 Sum_probs=237.5
Q ss_pred HHHHHhhHhHHhhhhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH
Q 009617 111 LGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA 189 (531)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 189 (531)
+..+...+..+...+.+|. +++++|+|..++ |++.+++.+++.++++++|+++||+|||++++++..+..++.++.+
T Consensus 14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~ 91 (417)
T d1pv7a_ 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677764 778899999999 9999999999999999999999999999999999999999998888
Q ss_pred HhchHHH----HHHHHHHHHhhhhhccchhhhhhhhcCCc--cccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHH
Q 009617 190 TAQSVQT----MIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263 (531)
Q Consensus 190 ~~~~~~~----l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~ 263 (531)
+..+... .++.+++.+.+.+...........+..++ +++.+..+........|..+++.+++.+.+ .+|++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 169 (417)
T d1pv7a_ 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFV 169 (417)
T ss_dssp HHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHH
T ss_pred HhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc--cccccc
Confidence 8766554 34555555555555555544444444333 345667778888888899999999988874 456666
Q ss_pred HHHhHHHH-HHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHH
Q 009617 264 FGLAAIPS-ILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342 (531)
Q Consensus 264 f~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (531)
+....... +...+..+..+|+++.. +++++.. .+.+........+.++.+..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 224 (417)
T d1pv7a_ 170 FWLGSGCALILAVLLFFAKTDAPSSA---TVANAVG----------------------ANHSAFSLKLALELFRQPKLWF 224 (417)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCSSS---CSSHHHH----------------------SCCCCCCHHHHHHHTTSSHHHH
T ss_pred ccchhhHHHHHHHHHHHHhcccccch---hhhhhhh----------------------hhcccccccccccccccccccc
Confidence 65655555 44455555566665421 1111100 0011111122223333333333
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCC--------------hhhHHHHHHHHhhhcCccHHHHHHhHHHHHHHH
Q 009617 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIE--------------SDVAASALVGAANVFGRKNLLTFSFTGMAASML 408 (531)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------------~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~ 408 (531)
.....................+........+.+ ........+.+.||.++++.+..+.++.+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~ 304 (417)
T d1pv7a_ 225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhh
Confidence 333322222221111111111111110000000 111222223358999999999988888887777
Q ss_pred HHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHH-HHHHHHHHHHHHhhHHHHHh
Q 009617 409 LLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSL-GMHWISNFVIGLYFLSVVNK 487 (531)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~g~~~~~ 487 (531)
.+.+. .+.+..++...+.+.+.+. ..+....++.|.+|++.|+++.|+.. ....+|.+++|.+.|.+.|.
T Consensus 305 ~~~~~--------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~ 375 (417)
T d1pv7a_ 305 GSSFA--------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHHTC--------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccc--------cccchhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76542 1333344444444444443 34556668899999999999999864 56679999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHhheecccCCCCCHHH
Q 009617 488 FGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEE 522 (531)
Q Consensus 488 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (531)
.|+...|.+.++++++..++..+..++++..+.++
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 99999999999888888887777777766666543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=6.2e-15 Score=141.64 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcC
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 223 (531)
+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+....++.|.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 341 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhHHHH-HHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhcc
Q 009617 224 PTEIRGALGSVN-QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280 (531)
Q Consensus 224 ~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~~ 280 (531)
|+++|+++.++. +....+|.+++|.++|.+.+. .||++.|++.+++.++..++.++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999975 556789999999999998855 78999999998888665554444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.7e-12 Score=126.06 Aligned_cols=152 Identities=18% Similarity=0.126 Sum_probs=117.8
Q ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHH---H--hchHHHHHHH
Q 009617 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---T--AQSVQTMIIG 200 (531)
Q Consensus 126 ~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~--~~~~~~l~~~ 200 (531)
...++.+.++.+..+. ++..+++.++..++.++.|+++||++||+......+...+...... . ..+.+..++.
T Consensus 272 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349 (447)
T ss_dssp HHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred hhhhcccccccccchh--hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4456677789999888 9999999999999999999999999987655444433333222222 1 3567777788
Q ss_pred HHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHH-HHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc
Q 009617 201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 201 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~ 279 (531)
-++.|++.+...+....++.|.+|++.|+++.|+.+....+ |.+++|++.+.+.+. .||+..|++.++..++..++..
T Consensus 350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHH
Confidence 88899998888888899999999999999999998877666 567789998888755 7899999888777765555443
Q ss_pred c
Q 009617 280 L 280 (531)
Q Consensus 280 ~ 280 (531)
+
T Consensus 429 ~ 429 (447)
T d1pw4a_ 429 V 429 (447)
T ss_dssp H
T ss_pred H
Confidence 3
|