Citrus Sinensis ID: 009620

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
Protein Sequence
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEEcccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEcccEEEcccEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccHHHHEEHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEEEccccccccEEcccccccEcccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccHHHEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHcccc
Coil and Loop (DISEMBL)
mnftttfrgnlsllphcssccdirfqpilaslhvtrpvrcrlgnfssykvSRFCRKKRELICRVtdtqtepdsnndkekevhdgqenqpatasdqeddksqpdsqldsqpqvenqingndvadtkggvqqddgngevasgsplpgvkqldeyiriPKETIDILkdqvfgfdtffvtnqepyeggvlfkgnlrgqAAKTYEKISTRMKNKFGDQYKLFLLvnpeddkpvavvvprktlqpettavpewfaaGAFGLVTVFTLLLRNVPALQSNLlstfdnlnlltnglpGALVTALVIGVHELGHILAAKStgvelgvpyfvpswqigsfgaITRIRNIVSKREDLLKVaaagplagfSLGFVLFLVGfifppsdgigivVDASVFHESFLAGGFAKLLLgdvlkdgtpisvnPLVIWAWAGLLINAinsipageldggRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLqrgpiaplseeitdpddkyIALGVLVLFLGLLvclpypfpfsdqavsnf
Flexible Loop (DISEMBL)
mnftttfrgnlsllPHCSSCCDIRFQPILASLHVTRPVrcrlgnfssykvsrfcrkkrelicrvtdtqtepdsnndkekevhdgqenqpatasdqeddksQPDSQLDSQPQVENQINGNDVADTKGGVQQDDGNgevasgsplpgvkQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPyeggvlfkgnlrgQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPfpfsdqavsnf
Low Complexity Region (SEG)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEddksqpdsqldsqpqVENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAgfslgfvlflvgfifPPSDGIGIVVDASVFHESflaggfaklllgDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTgvsivllglsslfsDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAlgvlvlflgllvclPYPFPFSDQAVSNF
Disordered region (IsUnstruct)
****TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVT*********************************************************************************KQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPF********
Disordered Region (DISOPRED)
****TTFRGNLSLLPHCSSCCDIRFQPILAS**********************************************************************************************************************************ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVV**********AVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Disordered Region (DISEMBL)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDT********************************************VENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Disordered Region (DISPRO)
*********NLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDT*********************************************************************************LDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQ*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
255571887	525	metalloendopeptidase, putative [Ricinus	0.983	0.992	0.739	0.0
359486422	543	PREDICTED: uncharacterized protein LOC10	0.988	0.965	0.724	0.0
334187443	524	ethylene-dependent gravitropism-deficien	0.966	0.977	0.690	0.0
42573279	527	ethylene-dependent gravitropism-deficien	0.966	0.971	0.691	0.0
297810677	558	peptidase M50 family protein [Arabidopsi	0.966	0.917	0.658	0.0
15239226	556	ethylene-dependent gravitropism-deficien	0.966	0.920	0.655	0.0
356501144	523	PREDICTED: uncharacterized protein LOC10	0.960	0.973	0.699	0.0
356551482	520	PREDICTED: uncharacterized protein LOC10	0.954	0.973	0.695	0.0
242052155	545	hypothetical protein SORBIDRAFT_03g00653	0.892	0.867	0.664	0.0
115434462	546	Os01g0142100 [Oryza sativa Japonica Grou	0.952	0.924	0.639	0.0

>gi|255571887|ref|XP_002526886.1| metalloendopeptidase, putative [Ricinus communis] gi|223533785|gb|EEF35517.1| metalloendopeptidase, putative [Ricinus communis]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/534 (73%), Positives = 446/534 (83%), Gaps = 13/534 (2%)

Query: 1   MNFTTTFRGNLS--LLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKR 58
           M+    FRGN +  LLP  S C          S+   R +RCRL +F  Y VSRF  +KR
Sbjct: 1   MSLIAAFRGNFTPLLLPLSSHCSSCT---SSVSVTSQRKLRCRLRDFKLYHVSRFV-EKR 56

Query: 59  ELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQING 118
            ++CRVT+T+TEPD NNDKEKEVH+G E  P T S       Q  S+ DSQP+V NQI+ 
Sbjct: 57  VIVCRVTETETEPDGNNDKEKEVHEGGETPPTTGS-----AGQVSSESDSQPRVVNQISN 111

Query: 119 NDVADTKGGVQQDDGNGEVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFFVT 176
           ND         QD     VASGSPLPGVK  QLDE  RIPK TIDILKDQVFGFDTFFVT
Sbjct: 112 NDEQTNSESSTQDADAENVASGSPLPGVKTQQLDESFRIPKGTIDILKDQVFGFDTFFVT 171

Query: 177 NQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKT 236
           +QEPYEGGVLFKGNLRG+AAK+YEK++ RM+NKFGD+Y+LFLLVNPEDD+PVAVVVPRKT
Sbjct: 172 SQEPYEGGVLFKGNLRGKAAKSYEKLTNRMQNKFGDEYRLFLLVNPEDDRPVAVVVPRKT 231

Query: 237 LQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALV 296
           LQPETTAVPEWFAAGAFGLVT+FTLLLRNVPALQSNLLSTFDNL LL +GL GAL+TAL+
Sbjct: 232 LQPETTAVPEWFAAGAFGLVTIFTLLLRNVPALQSNLLSTFDNLELLKDGLSGALITALI 291

Query: 297 IGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAG 356
           +GVHE+GHIL AKS+ V+LGVPYFVPSWQIGSFGAITRI NIV KREDLLKVAAAGPLAG
Sbjct: 292 LGVHEVGHILVAKSSDVKLGVPYFVPSWQIGSFGAITRIVNIVPKREDLLKVAAAGPLAG 351

Query: 357 FSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVI 416
           F+LGFVLFLVGF+ PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GTPISVNPLVI
Sbjct: 352 FALGFVLFLVGFVLPPSDGIGLVVDASVFHESFLAGGIAKLLLGDALKEGTPISVNPLVI 411

Query: 417 WAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVV 476
           WAWAG+LINAINSIPAGELDGGRI FA+WGRKAS R T VSI LLG+S+LF+DV FYWVV
Sbjct: 412 WAWAGMLINAINSIPAGELDGGRILFAIWGRKASARFTAVSIGLLGISALFNDVAFYWVV 471

Query: 477 LVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 530
           L+ FLQRGPIAPLSEEITDP++KY++LG+LVL LGLLVCLPYPFPF+D+ +++F
Sbjct: 472 LIAFLQRGPIAPLSEEITDPEEKYVSLGILVLLLGLLVCLPYPFPFTDEVLTSF 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486422|ref|XP_002271131.2| PREDICTED: uncharacterized protein LOC100267324 [Vitis vinifera] gi|297736633|emb|CBI25504.3| unnamed protein product [Vitis vinifera]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/549 (72%), Positives = 453/549 (82%), Gaps = 25/549 (4%)

Query: 1   MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRF-CRKKRE 59
           MNF  TFRGN +   HCSSCCD+RFQP L+S  V R  RCR+ N   ++VSR   R++  
Sbjct: 1   MNFPATFRGNFNPFSHCSSCCDLRFQPFLSSPIVWRQKRCRISNLQVHQVSRLGSRRRPR 60

Query: 60  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQ---- 115
           ++C VT+T+TEP++NND+EK  H+     P+      D   Q D QLDSQP V +Q    
Sbjct: 61  IVCGVTETETEPENNNDEEK-AHENGGMPPSI-----DSTVQNDPQLDSQPLVADQDKDQ 114

Query: 116 ------INGNDVADTKG------GVQQDDGNGEVASGSPLPGVKQ--LDEYIRIPKETID 161
                 +NG+++ ++        G  QD  N EVASGSPLPGVK   LDE IRIPKETID
Sbjct: 115 FVHNAMLNGDNMVNSDNQETEAQGNVQDSENLEVASGSPLPGVKPQVLDESIRIPKETID 174

Query: 162 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVN 221
           ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRG+AAK+YEKI+ RM+++FGD+YKLFLL+N
Sbjct: 175 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGKAAKSYEKITIRMQDRFGDKYKLFLLIN 234

Query: 222 PEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLN 281
           PEDDKPVAVVVPR TLQPETTAVPEWFAAGAFGLVTVFTL LRNVPALQSNLLS FDNLN
Sbjct: 235 PEDDKPVAVVVPRNTLQPETTAVPEWFAAGAFGLVTVFTLFLRNVPALQSNLLSVFDNLN 294

Query: 282 LLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSK 341
           LL +GLPGALVTALV+G HE+ HIL A+STG++LGVPYFVPSWQIGSFGAITRI NIV  
Sbjct: 295 LLMDGLPGALVTALVLGTHEISHILVARSTGIKLGVPYFVPSWQIGSFGAITRILNIVPN 354

Query: 342 REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGD 401
           REDLLKVAAAGP+AGFSLG VL L+GF+ PPSDGIG+VVDASVFHES LAGG AKLLLGD
Sbjct: 355 REDLLKVAAAGPIAGFSLGLVLLLLGFLLPPSDGIGVVVDASVFHESLLAGGIAKLLLGD 414

Query: 402 VLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLL 461
           VLK+GTPISVNPL+IWAWAGLLINAINSIPAGELDGGRI+FA+WGRKAS R T  SI LL
Sbjct: 415 VLKEGTPISVNPLLIWAWAGLLINAINSIPAGELDGGRISFAIWGRKASARFTAASIALL 474

Query: 462 GLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFP 521
           GLSSLF+DV FYWVVL+FFLQRGPIAPLSEEITDP+DKY+ALGV+VL LGLLVCLPYPFP
Sbjct: 475 GLSSLFNDVAFYWVVLIFFLQRGPIAPLSEEITDPEDKYVALGVVVLLLGLLVCLPYPFP 534

Query: 522 FSDQAVSNF 530
           F+++   +F
Sbjct: 535 FTNEVTVSF 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187443|ref|NP_001190232.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003536|gb|AED90919.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/526 (69%), Positives = 425/526 (80%), Gaps = 14/526 (2%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRE 59
           MN    +FRGN  +L  CSSCC ++FQP +A+   T  +       S  K      +KRE
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAA---TSSLNFGQTGTSRRKKDLKLERKRE 57

Query: 60  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 119
            + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+  GN
Sbjct: 58  TLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEAPGN 109

Query: 120 DVADTKGGVQQDDGNGEVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFFVTN 177
           +  +      QD    EV+SGSPLPGV   QLD+ +R+PKETIDIL+ QVFGFDTFFVT+
Sbjct: 110 EEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFFVTS 169

Query: 178 QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTL 237
           QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L
Sbjct: 170 QEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSL 229

Query: 238 QPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVI 297
           +PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTALV+
Sbjct: 230 EPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTALVL 289

Query: 298 GVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF 357
           GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGF
Sbjct: 290 GVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGF 349

Query: 358 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 417
           SLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+NPLVIW
Sbjct: 350 SLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLNPLVIW 409

Query: 418 AWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVL 477
           AWAGLLIN INSIPAGELDGG+IAF++WGRK +TRLTG SI LLGLS+LFSDV FYWVVL
Sbjct: 410 AWAGLLINGINSIPAGELDGGKIAFSIWGRKTATRLTGASIALLGLSALFSDVAFYWVVL 469

Query: 478 VFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 523
           +FFLQRGPIAPL+EEIT PDDKY++LG+LVLFL LLVCLPYPF F+
Sbjct: 470 IFFLQRGPIAPLAEEITVPDDKYVSLGILVLFLSLLVCLPYPFAFT 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573279|ref|NP_974736.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003534|gb|AED90917.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/529 (69%), Positives = 428/529 (80%), Gaps = 17/529 (3%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRFCRK 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       K+ R  RK
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSR--RKKDLKLERVFRK 58

Query: 57  KRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQI 116
            RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+ 
Sbjct: 59  -RETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEA 109

Query: 117 NGNDVADTKGGVQQDDGNGEVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFF 174
            GN+  +      QD    EV+SGSPLPGV   QLD+ +R+PKETIDIL+ QVFGFDTFF
Sbjct: 110 PGNEEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFF 169

Query: 175 VTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPR 234
           VT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR
Sbjct: 170 VTSQEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPR 229

Query: 235 KTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTA 294
           ++L+PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTA
Sbjct: 230 RSLEPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTA 289

Query: 295 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPL 354
           LV+GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPL
Sbjct: 290 LVLGVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPL 349

Query: 355 AGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPL 414
           AGFSLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+NPL
Sbjct: 350 AGFSLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLNPL 409

Query: 415 VIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYW 474
           VIWAWAGLLIN INSIPAGELDGG+IAF++WGRK +TRLTG SI LLGLS+LFSDV FYW
Sbjct: 410 VIWAWAGLLINGINSIPAGELDGGKIAFSIWGRKTATRLTGASIALLGLSALFSDVAFYW 469

Query: 475 VVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 523
           VVL+FFLQRGPIAPL+EEIT PDDKY++LG+LVLFL LLVCLPYPF F+
Sbjct: 470 VVLIFFLQRGPIAPLAEEITVPDDKYVSLGILVLFLSLLVCLPYPFAFT 518

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810677|ref|XP_002873222.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319059|gb|EFH49481.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/560 (65%), Positives = 432/560 (77%), Gaps = 48/560 (8%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHV-----TRPVRCRLGNFSSYKVSRFC 54
           MN    +FRGN  +L  CSS C ++FQP +A+        TR  R +     + K+ R  
Sbjct: 1   MNLAVASFRGNFGVLSQCSSYCSLQFQPFVAATSSLNFGQTRTSRRK----KNLKLERVF 56

Query: 55  RKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 114
           RK RE + RVT+TQTEP+ NND++    +G+E    T++D  D  +Q  ++L+SQ  + N
Sbjct: 57  RK-RETLVRVTETQTEPEGNNDEDNNGEEGKE----TSAD--DPPTQIPTELNSQSTIVN 109

Query: 115 QINGNDVADTKGGVQQDDGNGEVASGSPLPGVK--------------------------- 147
           +  GN+  +      QD    EV+SGSPLPGV                            
Sbjct: 110 EAPGNEEENKAQLSSQDGDKLEVSSGSPLPGVNVSITNNVKYKGDSLMLSIYLSFIKSCC 169

Query: 148 ----QLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIS 203
               QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI 
Sbjct: 170 EQPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGEPAKSYEKIK 229

Query: 204 TRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLL 263
           TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL L
Sbjct: 230 TRMENNFGDQYKLFLLSNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFL 289

Query: 264 RNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPS 323
           RNVPALQS+LLS FDNL LL +GLPGALVT LV+GVHELGHIL A S G++LGVP+FVPS
Sbjct: 290 RNVPALQSDLLSAFDNLELLKDGLPGALVTTLVLGVHELGHILVANSLGIKLGVPFFVPS 349

Query: 324 WQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDAS 383
           WQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDAS
Sbjct: 350 WQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLLGLFVPPSDGIGVVVDAS 409

Query: 384 VFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA 443
           VFHESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGGRIAF+
Sbjct: 410 VFHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGRIAFS 469

Query: 444 LWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAL 503
           +WGRK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++L
Sbjct: 470 IWGRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITAPDDKYVSL 529

Query: 504 GVLVLFLGLLVCLPYPFPFS 523
           G+LVLFL LLVCLPYPF F+
Sbjct: 530 GILVLFLSLLVCLPYPFAFT 549

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239226|ref|NP_196193.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|9759099|dbj|BAB09668.1| unnamed protein product [Arabidopsis thaliana] gi|332003535|gb|AED90918.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/558 (65%), Positives = 428/558 (76%), Gaps = 46/558 (8%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRFCRK 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       K+ R  RK
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSR--RKKDLKLERVFRK 58

Query: 57  KRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQI 116
            RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+ 
Sbjct: 59  -RETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEA 109

Query: 117 NGNDVADTKGGVQQDDGNGEVASGSPLPGVK----------------------------- 147
            GN+  +      QD    EV+SGSPLPGV                              
Sbjct: 110 PGNEEENKAQFSSQDGDKLEVSSGSPLPGVNVSIIIHVIYKDDSIMFSGCLSFIKSCCEQ 169

Query: 148 --QLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTR 205
             QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI TR
Sbjct: 170 PLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTR 229

Query: 206 MKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRN 265
           M+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRN
Sbjct: 230 MENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRN 289

Query: 266 VPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQ 325
           VPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSWQ
Sbjct: 290 VPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQ 349

Query: 326 IGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVF 385
           IGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDASVF
Sbjct: 350 IGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASVF 409

Query: 386 HESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALW 445
           HESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++W
Sbjct: 410 HESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSIW 469

Query: 446 GRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGV 505
           GRK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++LG+
Sbjct: 470 GRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLGI 529

Query: 506 LVLFLGLLVCLPYPFPFS 523
           LVLFL LLVCLPYPF F+
Sbjct: 530 LVLFLSLLVCLPYPFAFT 547

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501144|ref|XP_003519388.1| PREDICTED: uncharacterized protein LOC100778800 [Glycine max]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/532 (69%), Positives = 431/532 (81%), Gaps = 23/532 (4%)

Query: 5   TTFRGNLSL-LPHCSSC--CDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELI 61
           + FRGNL + L  C+SC   D+RFQ      H     RCR   F   +  R  R+ R + 
Sbjct: 9   SAFRGNLLVPLSRCTSCFKLDLRFQHSDGFRHS----RCRRSLFKLIRDPRSSRR-RGIA 63

Query: 62  CRVTDTQTEPDSNND-KEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGND 120
           C VT    EPD+ +D KEKE     E      S ++      D++  ++   EN+     
Sbjct: 64  CSVT----EPDNGSDEKEKEADKNGETLRVEDSSEQSIPPPVDAEQLNEFSDENK----- 114

Query: 121 VADTKGGVQQDDGNGEVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFFVTNQ 178
               +  VQ  D + EVASGSPLPGVK  +LDE I+IPKETI+ILK+QVFGFDTFFVT+Q
Sbjct: 115 ---GQSDVQNMDDSNEVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQ 171

Query: 179 EPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQ 238
           +PYEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPEDDKPVAVVVPR TLQ
Sbjct: 172 DPYEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDDKPVAVVVPRTTLQ 231

Query: 239 PETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIG 298
           PETTAVPEWFAAG+FGL+TVFTLLLRNVPALQS+LLSTFDNLNLL +GLPGALVTAL++G
Sbjct: 232 PETTAVPEWFAAGSFGLITVFTLLLRNVPALQSDLLSTFDNLNLLKDGLPGALVTALILG 291

Query: 299 VHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFS 358
           VHELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++
Sbjct: 292 VHELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYA 351

Query: 359 LGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWA 418
           LG +L L+GF+ PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWA
Sbjct: 352 LGLLLLLLGFVLPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWA 411

Query: 419 WAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLV 478
           WAGLLINAINSIPAGELDGGRI+FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+
Sbjct: 412 WAGLLINAINSIPAGELDGGRISFALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLI 471

Query: 479 FFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 530
           FFLQRGPIAPLSEEITDP +KY+A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 472 FFLQRGPIAPLSEEITDPGEKYVAIGVTVLLLGLLVCLPYPFPFTEETITSF 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551482|ref|XP_003544103.1| PREDICTED: uncharacterized protein LOC100816506 [Glycine max]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/532 (69%), Positives = 434/532 (81%), Gaps = 26/532 (4%)

Query: 5   TTFRGNLSL-LPHCSSCC--DIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELI 61
           ++FRGNL + L  C+SC   D+R Q      H+ RP       +SS+K+ R  R+ R + 
Sbjct: 9   SSFRGNLLVPLSRCTSCLELDLRIQHSEGFRHL-RP------RWSSFKLIRNPRR-RVIA 60

Query: 62  CRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQING-ND 120
           C VT+     + +++KEKE     E  P   S ++      D++         QIN  +D
Sbjct: 61  CSVTEPH---NGSDEKEKEADKNGETLPLEDSSEQSIPPPVDAE---------QINEFSD 108

Query: 121 VADTKGGVQQDDGNGEVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFFVTNQ 178
               +  VQ  D + EVASGSPLPGVK  +LDE I+IPKETI+ILK+QVFGFDTFFVT+Q
Sbjct: 109 ENKGQSDVQNMDDSNEVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQ 168

Query: 179 EPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQ 238
           +PYEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPED+ PVAVVVPR TLQ
Sbjct: 169 DPYEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDNMPVAVVVPRTTLQ 228

Query: 239 PETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIG 298
           PETTAVPEWFAAG+FGLVTVFTLLLRNVP+LQS+LLSTFDNLNLL +GLPGALVTAL++G
Sbjct: 229 PETTAVPEWFAAGSFGLVTVFTLLLRNVPSLQSDLLSTFDNLNLLKDGLPGALVTALILG 288

Query: 299 VHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFS 358
           VHELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++
Sbjct: 289 VHELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYA 348

Query: 359 LGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWA 418
           LG +L L+GFI PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWA
Sbjct: 349 LGLLLLLLGFILPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWA 408

Query: 419 WAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLV 478
           WAGLLINAINSIPAGELDGGRI+FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+
Sbjct: 409 WAGLLINAINSIPAGELDGGRISFALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLI 468

Query: 479 FFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 530
           FFLQRGPIAPLSEEITDP +KY+A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 469 FFLQRGPIAPLSEEITDPGEKYVAIGVTVLLLGLLVCLPYPFPFTEETLTSF 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052155|ref|XP_002455223.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor] gi|241927198|gb|EES00343.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/489 (66%), Positives = 401/489 (82%), Gaps = 16/489 (3%)

Query: 56  KKRELICR-VTDTQTEPDSNNDKEKEVHD----------GQENQPATASDQEDDKSQ--P 102
           + R++ C+ +T+T++E D + +++KE  D           + N PA +    D+K     
Sbjct: 55  RSRKVACQAMTETESEGDGDKEEKKEFGDDASSPSVDSVAEANGPAESDSSIDNKKDETA 114

Query: 103 DSQLDSQPQVENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVK-QLDEYIRIPKETID 161
           +++L S       ++G+  A +   VQ++    EV SGSPLPG+K QLD+ +RIPK TID
Sbjct: 115 NAELLSSSDTVQNVDGD--ATSTNDVQENVEVIEVVSGSPLPGMKQQLDDSVRIPKATID 172

Query: 162 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVN 221
           ILKDQVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI+ R++NKFGD+YKLFLL+N
Sbjct: 173 ILKDQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPAKSYEKITNRLQNKFGDEYKLFLLIN 232

Query: 222 PEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLN 281
           PED+KPVAVV+P++TLQPETTA+PEWFAA +FG+VT+FTLLLRNVP LQ NLLSTFDNL 
Sbjct: 233 PEDEKPVAVVIPKQTLQPETTALPEWFAAASFGIVTIFTLLLRNVPVLQDNLLSTFDNLE 292

Query: 282 LLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSK 341
           LL +GL GALVTAL+IGVHE+GHILAA+ +G++LGVPYFVPSWQIGSFGAITRI NIV  
Sbjct: 293 LLKDGLSGALVTALIIGVHEIGHILAARESGIKLGVPYFVPSWQIGSFGAITRIVNIVRN 352

Query: 342 REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGD 401
           REDLLK+AAAGPLAGFS GFVL L+GFI PPSDG+G+V+D +VFHESFL GG AKLLLGD
Sbjct: 353 REDLLKLAAAGPLAGFSFGFVLLLLGFILPPSDGLGLVIDPTVFHESFLVGGLAKLLLGD 412

Query: 402 VLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLL 461
           VLK+GT +S+NPLV+WAWAGLLINAINSIPAGELDGGRIA A+WGRK S+R++ ++I LL
Sbjct: 413 VLKEGTELSINPLVLWAWAGLLINAINSIPAGELDGGRIALAIWGRKISSRVSSLAIGLL 472

Query: 462 GLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFP 521
           G+S+LF+DV FYWVVL+FFLQRGPIAPLSEEITDP+  YI +GV +L  GLLVCLPYPFP
Sbjct: 473 GISALFNDVAFYWVVLIFFLQRGPIAPLSEEITDPESNYIGIGVAILLFGLLVCLPYPFP 532

Query: 522 FSDQAVSNF 530
           F    +++ 
Sbjct: 533 FDPSQLTDM 541

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115434462|ref|NP_001041989.1| Os01g0142100 [Oryza sativa Japonica Group] gi|113531520|dbj|BAF03903.1| Os01g0142100 [Oryza sativa Japonica Group] gi|222617713|gb|EEE53845.1| hypothetical protein OsJ_00322 [Oryza sativa Japonica Group]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/527 (63%), Positives = 412/527 (78%), Gaps = 22/527 (4%)

Query: 20  CCDIRFQPILASLHVT-RPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKE 78
           CC  R      SL  T RP R  L   S++ +    R +R +   +T+T+ + D N D+E
Sbjct: 24  CCQ-RILLASTSLPATGRPARLGLKLRSTHSLQ--IRNRRFVCQAMTETEPDGDGNGDEE 80

Query: 79  KEVHDGQENQPATAS-DQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQQDDGNG-- 135
           KE      + P+  S  QE+  ++ ++  D+    +++    +   +   VQ  DG+   
Sbjct: 81  KEELGDDASSPSVDSVTQENGSAESETNADN---TKDETVNTEPLSSSDTVQNIDGDATP 137

Query: 136 -----------EVASGSPLPGVKQ-LDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEG 183
                      +VA GSPLPG+KQ LDE +RIPK TIDILKDQVFGFDTFFVT+QEPYEG
Sbjct: 138 ASDAQENVEVVDVAVGSPLPGMKQQLDESVRIPKATIDILKDQVFGFDTFFVTSQEPYEG 197

Query: 184 GVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTA 243
           G+LFKGNLRGQ AK+YEKI+ R++NKFGDQYKLFLL+NPEDDKPVAVVVPR+TLQPETTA
Sbjct: 198 GILFKGNLRGQPAKSYEKITNRLQNKFGDQYKLFLLINPEDDKPVAVVVPRQTLQPETTA 257

Query: 244 VPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELG 303
           VPEWFAA +FG+VT+FTLLLRNVP LQ NLLSTFDNL LL +G+ GALVTA +IGVHE+ 
Sbjct: 258 VPEWFAAASFGVVTIFTLLLRNVPLLQDNLLSTFDNLELLKDGVYGALVTAAIIGVHEIA 317

Query: 304 HILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVL 363
           HILAA+ TG++L VPYFVPSWQIGSFGAITRI NIV  REDLLKVAAAGPLAGFSLGFVL
Sbjct: 318 HILAARDTGIKLAVPYFVPSWQIGSFGAITRIVNIVRNREDLLKVAAAGPLAGFSLGFVL 377

Query: 364 FLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLL 423
            L+GFI PPSDG+G+V+D +VFHESFL GG AKL+LGD LK+GT +S+NPLV+WAWAGLL
Sbjct: 378 LLLGFILPPSDGLGLVIDPAVFHESFLVGGLAKLILGDALKEGTKLSINPLVLWAWAGLL 437

Query: 424 INAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQR 483
           INAINSIPAGELDGGRIAFA+WGRK S+R++ ++I LLG+S+LF+DV FYWVVL+FFLQR
Sbjct: 438 INAINSIPAGELDGGRIAFAMWGRKISSRISSLAIGLLGISALFNDVAFYWVVLIFFLQR 497

Query: 484 GPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 530
           GPI+PLSEEIT+P++ YI++GV +L  GLLVCLPYPFPF    +++F
Sbjct: 498 GPISPLSEEITEPENNYISIGVAILLFGLLVCLPYPFPFDPSQLTDF 544

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.709	0.676	0.707	7.6e-161
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.409	0.395	0.290	1.3e-28
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	0.639	0.591	0.239	1.1e-18

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1388 (493.7 bits), Expect = 7.6e-161, Sum P(2) = 7.6e-161
 Identities = 266/376 (70%), Positives = 299/376 (79%)

Query:   148 QLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMK 207
             QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+
Sbjct:   172 QLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTRME 231

Query:   208 NKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVP 267
             N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRNVP
Sbjct:   232 NNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRNVP 291

Query:   268 ALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIG 327
             ALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSWQIG
Sbjct:   292 ALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQIG 351

Query:   328 SFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIGIVVDASVFHE 387
             SFGAITRI+NIV+KREDLLKVAAAGPLA               PPSDGIG+VVDASVFHE
Sbjct:   352 SFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASVFHE 411

Query:   388 SXXXXXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR 447
             S            D LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++WGR
Sbjct:   412 SFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSIWGR 471

Query:   448 KASTRLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAXXXXX 507
             K +TRLT              DV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++     
Sbjct:   472 KTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLGILV 531

Query:   508 XXXXXXXXXPYPFPFS 523
                      PYPF F+
Sbjct:   532 LFLSLLVCLPYPFAFT 547

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
 Identities = 65/224 (29%), Positives = 96/224 (42%)

Query:   279 NLNLLTNGLPGALVTAL-VIGV---HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 334
             ++ LL   +  AL  A  V+G+   HELGH LAA    V+L +PYF+P+  +GSFGAIT+
Sbjct:   286 DMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFIPNITLGSFGAITQ 345

Query:   335 IRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXX--XXPPSDGIGIV-VDASVFHESXXX 391
              ++I+  R   + ++ AGP A                  P     +V V + +F  S   
Sbjct:   346 FKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTEPDAANDLVQVPSMLFQGSLLL 405

Query:   392 XXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKAST 451
                              +S++PLVI  W GL   A N +P G LDGGR     +G+ A  
Sbjct:   406 GLISRATLGYAALHAATVSIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGKNALV 465

Query:   452 RLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITD 495
                               +   W + V   QR P  P   ++T+
Sbjct:   466 TFGLSTYVMLGLRVLGGPLALPWGLYVLICQRTPEKPCLNDVTE 509

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 88/368 (23%), Positives = 152/368 (41%)

Query:   158 ETIDILK-DQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKL 216
             + +D+ K    FGFDTFF T+   +  G +F GNLR    +   K+  ++    G    +
Sbjct:   176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query:   217 FLLVNPEDD--KPVAVVVPRKT--LQPETTAVPE-WFAAGAFGL-VTVF-TLLLRNVPAL 269
             + +    ++  K V +V P+    LQ E+T +   W    A  L VT F T+ L +   L
Sbjct:   236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query:   270 QSNLLSTFDNLNLLTNGLP--GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIG 327
             + +  +TFD+   + N +P  G  ++  ++GV E+   + A   GV+L   + VPS   G
Sbjct:   296 KPD--ATFDDY--IANVVPLFGGFLS--ILGVSEIATRVTAARHGVKLSPSFLVPSNWTG 349

Query:   328 SFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIG---IVVDASV 384
               G +    +++  ++ L  +  A   +                 S   G   + +    
Sbjct:   350 CLGVMNNYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYIRPQF 409

Query:   385 FHESXXXXXXX------XXXXXDVLK---DGTPISVNPLVIWAWAGLLINAINSIPAGEL 435
             F  +                  +VL    +G  + V+PL      G+++ ++N +P G L
Sbjct:   410 FDNNPLLSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRL 469

Query:   436 DGGRIAFALWGRKASTRLTXXXXXXXXXXXXXXDVT-FYWVVLVFFLQRGPIAPLSEEIT 494
             +GGRIA A++GR  +  L+               V    W +   F + G   P  +EIT
Sbjct:   470 EGGRIAQAMFGRSTAAILSFTTSLLLGIGGLSGSVLCLAWGLFATFFRGGEETPAKDEIT 529

Query:   495 DPDDKYIA 502
                D   A
Sbjct:   530 PVGDDRFA 537

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.85	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029258001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (543 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00007398001	SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_189, whole genome sho [...] (302 aa)				•			•		0.496
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.479
	GSVIVG00017440001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (113 aa)			•	•					0.465
	GSVIVG00016388001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (214 aa)				•			•		0.465
	GSVIVG00002190001	SubName- Full=Chromosome undetermined scaffold_127, whole genome shotgun sequence; (437 aa)			•	•					0.463
	GSVIVG00023602001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (180 aa)			•	•					0.453
	GSVIVG00019306001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (234 aa)			•	•					0.448
	GSVIVG00024719001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (396 aa)				•			•		0.420
	GSVIVG00022091001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (845 aa)				•			•		0.418
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)				•			•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	530
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	6e-35
pfam02163	206	pfam02163, Peptidase_M50, Peptidase family M50	6e-19
cd05709	180	cd05709, S2P-M50, Site-2 protease (S2P) class of z	1e-16
cd06161	208	cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease	9e-16
cd06164	227	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 prote	2e-11
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	4e-06
cd06163	182	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 p	3e-05
COG1994	230	COG1994, SpoIVFB, Zn-dependent proteases [General	7e-04
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	0.004

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score =  129 bits (326), Expect = 6e-35
 Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 51/231 (22%)

Query: 252 AFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKST 311
              ++T+ T LL        +      N  LL  GLP AL    ++G+HE+GH LAA+  
Sbjct: 2   LLLVLTLLTTLL---VGAWLSGNDVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRH 58

Query: 312 GVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFP 371
           GV+  +PYF+P   IG+FGA  R+R+ +  R+ L  +A AGPLAG  L   + ++G    
Sbjct: 59  GVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---- 114

Query: 372 PSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP 431
                                                     L +  W GLL+ A+N +P
Sbjct: 115 ------------------------------------------LAVAGWVGLLVTALNLLP 132

Query: 432 AGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT--FYWVVLVFF 480
            G+LDGG I  AL+GR+ +  +    +V LGL +L+   +    W +L+  
Sbjct: 133 VGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLLLI 183

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|216910 pfam02163, Peptidase_M50, Peptidase family M50

 Score = 84.8 bits (210), Expect = 6e-19
 Identities = 49/209 (23%), Positives = 68/209 (32%), Gaps = 30/209 (14%)

Query: 288 PGALVTALVIGVHELGHILAAKSTGVE-----------------LGVPYFVPSWQIGSFG 330
              L   + + VHELGH L A+  GV+                     Y +      +FG
Sbjct: 1   AFILALLISVVVHELGHALVARRFGVKVERFAIGFGPLLFKHLDGATEYTIRLMFGWAFG 60

Query: 331 AITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 390
           A    R         L ++ AGPLA F L  +LF +  + P        V   V   S  
Sbjct: 61  APIERRFKKKSPWQRLLISLAGPLANFILALLLFALLLLLPG--IPVPPVIGGVVVGSSK 118

Query: 391 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---- 446
             G   +             V  L   A   L +   N +P   LDGG I  +L      
Sbjct: 119 LSGPVAIAKV-GSTSALSGLVALLAFLALLNLNLGLFNLLPIPPLDGGHILRSLLAVRGR 177

Query: 447 ------RKASTRLTGVSIVLLGLSSLFSD 469
                       +    ++LL L  LF+D
Sbjct: 178 PLNERAENYIYLVGLALLLLLILLLLFND 206

Length = 206

>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 47/200 (23%), Positives = 61/200 (30%), Gaps = 43/200 (21%)

Query: 287 LPGALVTALVIGVHELGHILAAKSTG--VELGVPYFVPSWQIGS---------FGAITRI 335
           L   L   + + VHELGH L A+  G  V      F  +               G   + 
Sbjct: 1   LAFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKP 60

Query: 336 -----RNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 390
                R     R   L VA AGPLA   L  +L L+  +        +   AS    + L
Sbjct: 61  VGENPRAFKKPRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLL 120

Query: 391 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---R 447
           A                          A   L +   N +P   LDGGRI  AL      
Sbjct: 121 AFL------------------------ALINLNLAVFNLLPIPPLDGGRILRALLEAIRG 156

Query: 448 KASTRLTGVSIVLLGLSSLF 467
           +   RL      +L    L 
Sbjct: 157 RVEERLEAYGFAILLGLLLL 176

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-binding proteins (SREBPs) from membranes of the ER. These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD superfamily. Prokaryotic S2P/M50 homologs have been shown to regulate stress responses, sporulation, cell division, and cell differentiation. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses, and in Bacillus subtilis, the S2P homolog SpoIVFB is involved in the pro-sigmaK pathway of spore formation. Some of the subfamilies within this hierarchy contain one or two PDZ domain insertions, with putative regulatory roles, such as the inhibition of substrate cleavage as seen by the RseP PDZ domain. Length = 180

>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 75.7 bits (187), Expect = 9e-16
 Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 51/207 (24%)

Query: 286 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 345
           GL  AL+  L + +HELGH L A+  G+       V S  +  FG +  +       ++ 
Sbjct: 30  GLLEALLLFLSVLLHELGHALVARRYGIR------VRSITLLPFGGVAELEEEPETPKEE 83

Query: 346 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 405
             +A AGPL    L  + +L+  + P                        + L       
Sbjct: 84  FVIALAGPLVSLLLAGLFYLLYLLLPGGG---------------PLSSLLEFL------- 121

Query: 406 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRKASTR-------LT 454
                       A   L++   N +PA  LDGGR+  AL     G + +TR       L 
Sbjct: 122 ------------AQVNLILGLFNLLPALPLDGGRVLRALLWRRTGYRRATRIAARIGQLF 169

Query: 455 GVSIVLLGLSSLFSDVTFYWVVLVFFL 481
            + +V+LGL  LF  +   W++L+   
Sbjct: 170 AILLVVLGLFLLFLGLGNLWLLLIALF 196

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. Length = 208

>gnl|CDD|100085 cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 55/213 (25%), Positives = 81/213 (38%), Gaps = 52/213 (24%)

Query: 286 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 345
           GL  AL+    + +HELGH L A+  G+       V S  +  FG + R+          
Sbjct: 45  GLAAALLLFASVLLHELGHSLVARRYGIP------VRSITLFLFGGVARLEREPETPGQE 98

Query: 346 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 405
             +A AGPL    L  +  L+    P S              +   G     L       
Sbjct: 99  FVIAIAGPLVSLVLALLFLLLSLALPGSG-------------AGPLGVLLGYL------- 138

Query: 406 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA-LWGRK---------AST--RL 453
                       A   LL+   N +PA  LDGGR+  A LW R          A+   R 
Sbjct: 139 ------------ALINLLLAVFNLLPAFPLDGGRVLRALLWRRTGDYLKATRIAAWVGRG 186

Query: 454 TGVSIVLLGLSSLFSDVT--FYWVVLVFFLQRG 484
             V +++LGL SLF ++    + +++ +FL  G
Sbjct: 187 FAVLLIILGLLSLFLNLLGGLWLILIAWFLYIG 219

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 227

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 39/204 (19%), Positives = 62/204 (30%), Gaps = 21/204 (10%)

Query: 286 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR-------IRNI 338
           G    L+T LVI +    H +AA+        P  +P  + G                  
Sbjct: 176 GDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPVVIPL-KPGDKIVAVDVGAIGLSPNGE 234

Query: 339 VSKREDLLKVAAAGPLAGFSLGF--VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAK 396
               + L+K    GPL    L       LV         + I  D S+     L+G    
Sbjct: 235 PDVGKVLVKY---GPLEAVGLAVEKTGRLVKLTLKMLKKL-ITGDLSL---KNLSGPIGI 287

Query: 397 LLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGV 456
             +         I  N L   A   + +  +N +P   LDGG + F L       +    
Sbjct: 288 AKIAGAAASLGLI--NLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEAL-RGKPLSE 344

Query: 457 SIVLLGLSSLFSDVTFYWVVLVFF 480
            +         + +    ++L  F
Sbjct: 345 RVEAALYRIGLALLLL-LMLLATF 367

Length = 375

>gnl|CDD|100084 cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 59/207 (28%), Positives = 83/207 (40%), Gaps = 51/207 (24%)

Query: 287 LPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFG-AITRIRNIVSKREDL 345
           L   LV  ++I VHELGH L AK  GV+      V  + IG FG  +   +    K E  
Sbjct: 2   LAFILVLGILIFVHELGHFLVAKLFGVK------VEEFSIG-FGPKLFSFK----KGETE 50

Query: 346 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHES--------FLAGGFAKL 397
             ++A  PL     G+V  L G    P +      D   F+            AG  A  
Sbjct: 51  YSISAI-PLG----GYVKML-GED--PEEEADPEDDPRSFNSKPVWQRILIVFAGPLANF 102

Query: 398 LLGDVLKDGTPISVNPLVIWAWAGLL-IN--AINSIPAGELDGGRIAFALW----GRKAS 450
           LL  VL           V+ ++  LL IN   +N +P   LDGG + F L     GR  S
Sbjct: 103 LLAIVLF---------AVLLSFLALLSINLGILNLLPIPALDGGHLLFLLIEAIRGRPLS 153

Query: 451 TRLTGVS-------IVLLGLSSLFSDV 470
            ++  +        ++ L L   F+D+
Sbjct: 154 EKVEEIIQTIGFALLLGLMLFVTFNDI 180

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA. Length = 182

>gnl|CDD|224905 COG1994, SpoIVFB, Zn-dependent proteases [General function prediction only]

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 39/188 (20%), Positives = 58/188 (30%), Gaps = 41/188 (21%)

Query: 300 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAI-TRIRNIVSKREDLLKVA-AAGPLAGF 357
           H LGH   A   G++L +         G    +    R     R     V+ A GPL   
Sbjct: 58  HPLGHSDEAGRLGLKLLLALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPLTNI 117

Query: 358 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 417
           +L  +  L   +F                 S L    A L L           VN     
Sbjct: 118 ALAVLGLLALSLFLYH--------------SVLFAFLAALAL-----------VN----- 147

Query: 418 AWAGLLINAINSIPAGELDGGRIAFALWGRKAS-----TRLTGVSIVLLGLSSLFSDVTF 472
               L++   N +P   LDGGR+  AL  R+         L  +  +L+ + +    +  
Sbjct: 148 ----LVLALFNLLPIPPLDGGRVLRALLPRRYGAAIAAIELAALLGLLVLILAGILGLLV 203

Query: 473 YWVVLVFF 480
               L   
Sbjct: 204 LNPPLRLI 211

Length = 230

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 37/232 (15%)

Query: 302 LGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGF 361
           L   L A+  G    V       +       +RIR +V+    LL +   GPL G  L  
Sbjct: 161 LEAYLGAQGIGALGTVFQAAIISRSLPRFLRSRIRRLVA---QLLYLLLLGPLGGLLLAL 217

Query: 362 VLFLVGFIFPP------SDGIGIVVDASVFHESFLAGGFAKLL--LGDVLKDGTPISVNP 413
           +L  +  +F        + G+  ++  S  H + LAG F  LL  LG  +    P+ +  
Sbjct: 218 LLGELSGLFKELWEAFRALGLAHLLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGL 277

Query: 414 L-VIWAW-AGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT 471
           L + +A   G   + + ++         +A AL    +   L+ + I+LL   ++   + 
Sbjct: 278 LALFYAILTGFSPSVLRALVM-------LALALLASLSLRNLSSIFILLLSAIAILL-LA 329

Query: 472 FYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 523
              ++ + F        LS         ++A+  L+L+  L   L   +P  
Sbjct: 330 PLAILSLGF-------WLS---------FLAVAALILWSQLFRLLGLSWPLP 365

Length = 453

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	530
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	99.97
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.93
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.91
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.86
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.85
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.82
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	99.78
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	99.77
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	99.77
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.53
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.51
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	99.33
COG0750	375	Predicted membrane-associated Zn-dependent proteas	98.88
PF13398	200	Peptidase_M50B: Peptidase M50B-like	97.32
COG0750	375	Predicted membrane-associated Zn-dependent proteas	96.3
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	95.49

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.97  E-value=2.8e-31  Score=253.67  Aligned_cols=177  Identities=40%  Similarity=0.722  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHhcccccccchhccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceecccceE
Q 009620          253 FGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI  332 (530)
Q Consensus       253 ~~l~Tl~Tt~~ag~~~L~~~~~~~~~~~~~l~~glp~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~LgtFGAv  332 (530)
                      ++++|+.+....+.- ...+  +..++++.+..+++++++++.++++||+||+++||++|+|++.++++|...+|++|++
T Consensus         3 ~~~~s~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~   79 (183)
T cd06160           3 LLVLTLLTTLLVGAW-LSGN--DVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAF   79 (183)
T ss_pred             HHHHHHHHHHHHHHH-Hhcc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEE
Confidence            456677776655431 1111  2236778889999999999999999999999999999999999999998779999999


Q ss_pred             EecccccCCccceeeeeecchhhHHHHHHHHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccch
Q 009620          333 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVN  412 (530)
Q Consensus       333 i~~~s~~~~RkalfdIAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lh  412 (530)
                      +++++..++|+++++|++|||++|+++++++++++                                             
T Consensus        80 ~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~~---------------------------------------------  114 (183)
T cd06160          80 IRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---------------------------------------------  114 (183)
T ss_pred             EEecCCCCChhHhehhhhhHHHHHHHHHHHHHHHH---------------------------------------------
Confidence            99998888999999999999999999987775543                                             


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHH
Q 009620          413 PLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSD--VTFYWVVLV  478 (530)
Q Consensus       413 PL~~agwinLvLtafNLLPigpLDGGRIl~Allgrr~a~~i~~~~~~lLGl~~l~~~--~~l~W~ili  478 (530)
                       +..++|+|+++++|||+|++|||||||+++++++|.+.++++++.+++|+.++.++  .+++|+.++
T Consensus       115 -~~~~~~~nl~l~~fNLLPi~PLDGGril~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  181 (183)
T cd06160         115 -LAVAGWVGLLVTALNLLPVGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLL  181 (183)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCCcChHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             12458999999999999999999999999999999999999999899998888765  455555443

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.93  E-value=3.2e-25  Score=218.09  Aligned_cols=134  Identities=30%  Similarity=0.390  Sum_probs=111.4

Q ss_pred             cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceecccceEEecccccCCccceeeeeecchhhHH
Q 009620          278 DNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF  357 (530)
Q Consensus       278 ~~~~~l~~glp~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~LgtFGAvi~~~s~~~~RkalfdIAlAGPLAg~  357 (530)
                      .+...+..++.++++++.++++||+||+++||++|+++.      .+.+.+||+++++++...++++++.|++|||++|+
T Consensus        37 ~~~~~~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~~IalAGPl~Nl  110 (227)
T cd06164          37 LGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIPVR------SITLFLFGGVARLEREPETPGQEFVIAIAGPLVSL  110 (227)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEC------eEEEEeeeEEEEecCCCCCHHHHhhhhhhHHHHHH
Confidence            455668889999999999999999999999999999998      67777899999999888889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCCh
Q 009620          358 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDG  437 (530)
Q Consensus       358 llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtafNLLPigpLDG  437 (530)
                      +++++++++....+...            .+.                    ....+.+.+|+|+++++|||+|++||||
T Consensus       111 lla~i~~~l~~~~~~~~------------~~~--------------------~~~~~~~~~~~Nl~l~~fNLlP~~PLDG  158 (227)
T cd06164         111 VLALLFLLLSLALPGSG------------AGP--------------------LGVLLGYLALINLLLAVFNLLPAFPLDG  158 (227)
T ss_pred             HHHHHHHHHHHHhcccc------------chH--------------------HHHHHHHHHHHHHHHHHHhCcCCCCCCh
Confidence            99998877665432110            000                    0123456789999999999999999999


Q ss_pred             HHHHHHHhhhHH
Q 009620          438 GRIAFALWGRKA  449 (530)
Q Consensus       438 GRIl~Allgrr~  449 (530)
                      |||+++++.++.
T Consensus       159 gril~~ll~~~~  170 (227)
T cd06164         159 GRVLRALLWRRT  170 (227)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.91  E-value=1.7e-23  Score=202.94  Aligned_cols=129  Identities=29%  Similarity=0.433  Sum_probs=107.8

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceecccceEEecccccCCccceeeeeecchhhHHHHH
Q 009620          281 NLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG  360 (530)
Q Consensus       281 ~~l~~glp~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~LgtFGAvi~~~s~~~~RkalfdIAlAGPLAg~llA  360 (530)
                      ..+..++.+++.++.++++||+||+++||++|+++.      .+.+.+||+++++++...+|++++.|++|||++|++++
T Consensus        25 ~~~~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la   98 (208)
T cd06161          25 VAWLLGLLEALLLFLSVLLHELGHALVARRYGIRVR------SITLLPFGGVAELEEEPETPKEEFVIALAGPLVSLLLA   98 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc------ceEEEeeeeeeeeccCCCChhHheeeeeehHHHHHHHH
Confidence            457788899999999999999999999999999998      67788899999998777789999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHH
Q 009620          361 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRI  440 (530)
Q Consensus       361 l~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtafNLLPigpLDGGRI  440 (530)
                      +++.++....+..              +                    .....+.+.+++|+++++|||+|+.|||||||
T Consensus        99 ~~~~~l~~~~~~~--------------~--------------------~~~~~~~~~~~~N~~l~lfNLlPi~pLDGg~i  144 (208)
T cd06161          99 GLFYLLYLLLPGG--------------G--------------------PLSSLLEFLAQVNLILGLFNLLPALPLDGGRV  144 (208)
T ss_pred             HHHHHHHHHcccc--------------h--------------------HHHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            8887655432110              0                    00123456789999999999999999999999


Q ss_pred             HHHHhhhHH
Q 009620          441 AFALWGRKA  449 (530)
Q Consensus       441 l~Allgrr~  449 (530)
                      +++++.++.
T Consensus       145 l~~ll~~~~  153 (208)
T cd06161         145 LRALLWRRT  153 (208)
T ss_pred             HHHHHHHhc
Confidence            999987764

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.86  E-value=5.7e-21  Score=182.78  Aligned_cols=113  Identities=34%  Similarity=0.428  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccC--cccccc------------ceecccceEEeccccc--------------
Q 009620          288 PGALVTALVIGVHELGHILAAKSTGVELGV--PYFVPS------------WQIGSFGAITRIRNIV--------------  339 (530)
Q Consensus       288 p~aL~Ll~iL~iHElGH~laAr~~Gvk~s~--P~fIP~------------i~LgtFGAvi~~~s~~--------------  339 (530)
                      .+.+++..++++||+||+++||++|+|+..  .-|=|.            +.+.++|+++++++..              
T Consensus         3 ~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~f   82 (182)
T cd06163           3 AFILVLGILIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRSF   82 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHHH
Confidence            355677788999999999999999999873  001121            2356799999886431              


Q ss_pred             --CCccceeeeeecchhhHHHHHHHHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHH
Q 009620          340 --SKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW  417 (530)
Q Consensus       340 --~~RkalfdIAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~a  417 (530)
                        .++++++.|++|||++|+++|++++++.                                              +.++
T Consensus        83 ~~~~~~~ri~V~lAGP~~NlilA~i~~~~~----------------------------------------------~~~~  116 (182)
T cd06163          83 NSKPVWQRILIVFAGPLANFLLAIVLFAVL----------------------------------------------LSFL  116 (182)
T ss_pred             ccCCcchhhhhhhhHHHHHHHHHHHHHHHH----------------------------------------------HHHH
Confidence              1467899999999999999988664321                                              1245


Q ss_pred             HHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 009620          418 AWAGLLINAINSIPAGELDGGRIAFALWG  446 (530)
Q Consensus       418 gwinLvLtafNLLPigpLDGGRIl~Allg  446 (530)
                      .++|+.+++|||+|++||||||++++++.
T Consensus       117 ~~~n~~l~~fNLlPippLDGg~il~~~~~  145 (182)
T cd06163         117 ALLSINLGILNLLPIPALDGGHLLFLLIE  145 (182)
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            78999999999999999999999999985

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=6.2e-21  Score=179.15  Aligned_cols=139  Identities=28%  Similarity=0.322  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccC----cccccc-------ceecccceEEecccccC-----Cccceeeeeec
Q 009620          288 PGALVTALVIGVHELGHILAAKSTGVELGV----PYFVPS-------WQIGSFGAITRIRNIVS-----KREDLLKVAAA  351 (530)
Q Consensus       288 p~aL~Ll~iL~iHElGH~laAr~~Gvk~s~----P~fIP~-------i~LgtFGAvi~~~s~~~-----~RkalfdIAlA  351 (530)
                      .+.+++++++.+||+||+++||++|+++..    ..+.|.       +.+.++|+++++.+...     +|++++.|++|
T Consensus         2 ~~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~~~~~~~~~~~i~la   81 (180)
T cd05709           2 AFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRAFKKPRWQRLLVALA   81 (180)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhhhccchhhhhhhhhh
Confidence            356678889999999999999999998752    122221       22445799998877554     48899999999


Q ss_pred             chhhHHHHHHHHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcC
Q 009620          352 GPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP  431 (530)
Q Consensus       352 GPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtafNLLP  431 (530)
                      ||++|++++++++++..........     ..  ..+                 ......+.+.+++|+|+.+++|||+|
T Consensus        82 GPl~nllla~i~~~~~~~~~~~~~~-----~~--~~~-----------------~~~~~~~~l~~~~~~n~~l~~fNLlP  137 (180)
T cd05709          82 GPLANLLLALLLLLLLLLLGGLPPA-----PV--GQA-----------------ASSGLANLLAFLALINLNLAVFNLLP  137 (180)
T ss_pred             hHHHHHHHHHHHHHHHHHHccCCcc-----ch--hhh-----------------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999987766543221000     00  000                 00011245678899999999999999


Q ss_pred             CCCCChHHHHHHHhhhHHH
Q 009620          432 AGELDGGRIAFALWGRKAS  450 (530)
Q Consensus       432 igpLDGGRIl~Allgrr~a  450 (530)
                      ++||||||++++++.++..
T Consensus       138 i~plDGg~il~~~l~~~~~  156 (180)
T cd05709         138 IPPLDGGRILRALLEAIRG  156 (180)
T ss_pred             CCCCChHHHHHHHHhHHHH
Confidence            9999999999999988764

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.82  E-value=4.1e-19  Score=178.75  Aligned_cols=120  Identities=26%  Similarity=0.319  Sum_probs=94.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceecccceEEeccccc---CCccceeeeeecchhhHHHH
Q 009620          283 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIV---SKREDLLKVAAAGPLAGFSL  359 (530)
Q Consensus       283 l~~glp~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~LgtFGAvi~~~s~~---~~RkalfdIAlAGPLAg~ll  359 (530)
                      +...+.+.++++.++.+||+||+++||++|+++....+  .+.+.++||++++++..   .++++++.|++|||++|+++
T Consensus       107 ~i~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl--~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvl  184 (263)
T cd06159         107 FIPLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGL--LLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVV  184 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhH--HHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHH
Confidence            34566677788889999999999999999999983211  01123588999886543   46789999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHH
Q 009620          360 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGR  439 (530)
Q Consensus       360 Al~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtafNLLPigpLDGGR  439 (530)
                      +++++++..                                             +.+..|+|+.+++|||+|+.||||||
T Consensus       185 a~i~~~l~~---------------------------------------------l~~~~~~N~~l~lFNLlP~~PLDGg~  219 (263)
T cd06159         185 ALIAFALFF---------------------------------------------LYWIFWINFLLGLFNCLPAIPLDGGH  219 (263)
T ss_pred             HHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhCCCCCCCChHH
Confidence            987654321                                             12457899999999999999999999


Q ss_pred             HHHHHhhhHH
Q 009620          440 IAFALWGRKA  449 (530)
Q Consensus       440 Il~Allgrr~  449 (530)
                      ++++++..+.
T Consensus       220 il~~ll~~~~  229 (263)
T cd06159         220 VFRDLLEALL  229 (263)
T ss_pred             HHHHHHHHHh
Confidence            9999976543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.78  E-value=5.8e-19  Score=166.68  Aligned_cols=127  Identities=28%  Similarity=0.345  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccCccc----ccc----------ceecccceE---------------Eeccccc
Q 009620          289 GALVTALVIGVHELGHILAAKSTGVELGVPYF----VPS----------WQIGSFGAI---------------TRIRNIV  339 (530)
Q Consensus       289 ~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~f----IP~----------i~LgtFGAv---------------i~~~s~~  339 (530)
                      +.++++.++.+||+||+++|+++|+|+.....    .+.          +.+.++|++               ...+...
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            35677789999999999999999999985421    111          001122332               2222234


Q ss_pred             CCccceeeeeecchhhHHHHHHHHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHH
Q 009620          340 SKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW  419 (530)
Q Consensus       340 ~~RkalfdIAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agw  419 (530)
                      .+|++.+.|++|||++|++++++++.+.........                              ......+.+.+++|
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~  131 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGSVG------------------------------WSSFFAEFLFFFAW  131 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS-------------------------------------EETTEEHHHHHHH
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhcccc------------------------------ccHHHHHHHHHHHH
Confidence            567889999999999999999888766543211000                              01122356778999


Q ss_pred             HHHHHHHHhhcCCCCCChHHHHHHHh
Q 009620          420 AGLLINAINSIPAGELDGGRIAFALW  445 (530)
Q Consensus       420 inLvLtafNLLPigpLDGGRIl~All  445 (530)
                      +|+.++++||+|++||||||++++++
T Consensus       132 ~n~~l~~~NllPi~~lDG~~il~~l~  157 (192)
T PF02163_consen  132 LNFILALFNLLPIPPLDGGRILRALL  157 (192)
T ss_dssp             HHHHHHHHTTSSSSSSHHHHHHHHHH
T ss_pred             HHHHHhhhhcccCCcCCHHHHHHHHH
Confidence            99999999999999999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=99.77  E-value=6.2e-18  Score=171.27  Aligned_cols=113  Identities=25%  Similarity=0.231  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceeccc----ceEEecccc---cCCccceeeeeecchhhHHHHHH
Q 009620          289 GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSF----GAITRIRNI---VSKREDLLKVAAAGPLAGFSLGF  361 (530)
Q Consensus       289 ~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~LgtF----GAvi~~~s~---~~~RkalfdIAlAGPLAg~llAl  361 (530)
                      +.++++.++.+||+||+++|+++|+++.      .+.+..|    ||+++..+.   ..++++++.|+.|||++|+++|+
T Consensus       130 ~l~al~isvvvHElgHal~A~~~gi~V~------~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~  203 (277)
T cd06162         130 YFTALLISGVVHEMGHGVAAVREQVRVN------GFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGL  203 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeec------eEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHHHH
Confidence            4466788999999999999999999998      4333333    899987433   23567789999999999999998


Q ss_pred             HHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHH
Q 009620          362 VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA  441 (530)
Q Consensus       362 ~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtafNLLPigpLDGGRIl  441 (530)
                      +++++.+.                                          ..+.+.+++|+.+++|||+|+.|||||||+
T Consensus       204 i~~~l~~~------------------------------------------~~l~~la~iNl~lavfNLlP~~pLDGg~il  241 (277)
T cd06162         204 VGYLLLIE------------------------------------------TFLKYLISLSGALAVINAVPCFALDGQWIL  241 (277)
T ss_pred             HHHHHHHH------------------------------------------HHHHHHHHHHHHHHHhhcCCCCCCChHHHH
Confidence            77643210                                          012356789999999999999999999999


Q ss_pred             HHHhhhHH
Q 009620          442 FALWGRKA  449 (530)
Q Consensus       442 ~Allgrr~  449 (530)
                      ++++.++.
T Consensus       242 ~~ll~~~~  249 (277)
T cd06162         242 STFLEATL  249 (277)
T ss_pred             HHHHHHHh
Confidence            99987654

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.77  E-value=2.7e-18  Score=163.88  Aligned_cols=134  Identities=26%  Similarity=0.324  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccC----ccccccc--------e--ec--ccceEEec-----ccccCCccceee
Q 009620          289 GALVTALVIGVHELGHILAAKSTGVELGV----PYFVPSW--------Q--IG--SFGAITRI-----RNIVSKREDLLK  347 (530)
Q Consensus       289 ~aL~Ll~iL~iHElGH~laAr~~Gvk~s~----P~fIP~i--------~--Lg--tFGAvi~~-----~s~~~~Rkalfd  347 (530)
                      ..++++.++.+||+||+++|+++|+++..    .++.|.-        .  +.  ..+++++.     +...++|++++.
T Consensus         4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~   83 (181)
T cd06158           4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLL   83 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhh
Confidence            44567789999999999999999999863    4455521        0  11  02334432     222346788999


Q ss_pred             eeecchhhHHHHHHHHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHH
Q 009620          348 VAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAI  427 (530)
Q Consensus       348 IAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtaf  427 (530)
                      |++|||++|+++++++.++........+         ...+.+                    ...+....++|+.+++|
T Consensus        84 valAGP~~n~~la~i~~~~~~~~~~~~~---------~~~~~l--------------------~~~~~~~~~~Ni~l~lf  134 (181)
T cd06158          84 VSLAGPLSNLLLALLFALLLRLLPAFGG---------VVASFL--------------------FLMLAYGVLINLVLAVF  134 (181)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhccccc---------hhhHHH--------------------HHHHHHHHHHHHHHHHH
Confidence            9999999999999887655433211100         000111                    12234567899999999


Q ss_pred             hhcCCCCCChHHHHHHHhhhHHHH
Q 009620          428 NSIPAGELDGGRIAFALWGRKAST  451 (530)
Q Consensus       428 NLLPigpLDGGRIl~Allgrr~a~  451 (530)
                      ||+|++|||||||+++++.++...
T Consensus       135 NLlPipPLDG~~il~~~l~~~~~~  158 (181)
T cd06158         135 NLLPIPPLDGSKILAALLPRRLAE  158 (181)
T ss_pred             HhCCCCCCChHHHHHHHcchhHHH
Confidence            999999999999999999887654

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>TIGR00054 RIP metalloprotease RseP

Probab=99.53  E-value=1.3e-13  Score=146.77  Aligned_cols=80  Identities=28%  Similarity=0.419  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccC--cccccc------------ceecccceEEecccc----------------
Q 009620          289 GALVTALVIGVHELGHILAAKSTGVELGV--PYFVPS------------WQIGSFGAITRIRNI----------------  338 (530)
Q Consensus       289 ~aL~Ll~iL~iHElGH~laAr~~Gvk~s~--P~fIP~------------i~LgtFGAvi~~~s~----------------  338 (530)
                      +.+.+.+++++||+||+++||++|+++..  --|=|.            +.+.++|+++++...                
T Consensus         9 ~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~~f   88 (420)
T TIGR00054         9 SILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGDLF   88 (420)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhhhh
Confidence            35566778899999999999999999862  111121            336789999998411                


Q ss_pred             -cCCccceeeeeecchhhHHHHHHHHHHHHh
Q 009620          339 -VSKREDLLKVAAAGPLAGFSLGFVLFLVGF  368 (530)
Q Consensus       339 -~~~RkalfdIAlAGPLAg~llAl~ll~iGl  368 (530)
                       ..+.++++.|.+|||++|+++|++++++.+
T Consensus        89 ~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~  119 (420)
T TIGR00054        89 NNKSVFQKAIIIFAGPLANFIFAIFVYIFIS  119 (420)
T ss_pred             ccCCHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence             035578899999999999999998876543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.51  E-value=1.6e-13  Score=146.94  Aligned_cols=84  Identities=23%  Similarity=0.334  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC--cccccc-------------ceecccceEEecccc-----------
Q 009620          285 NGLPGALVTALVIGVHELGHILAAKSTGVELGV--PYFVPS-------------WQIGSFGAITRIRNI-----------  338 (530)
Q Consensus       285 ~glp~aL~Ll~iL~iHElGH~laAr~~Gvk~s~--P~fIP~-------------i~LgtFGAvi~~~s~-----------  338 (530)
                      ..+.+.+++.+++++||+||+++||++|+|+..  --|=|.             +-+.++|++.+|...           
T Consensus         6 ~i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~   85 (449)
T PRK10779          6 NLAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRH   85 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhh
Confidence            344466667778899999999999999999983  111121             235688999987432           


Q ss_pred             ----cCCccceeeeeecchhhHHHHHHHHHHHHh
Q 009620          339 ----VSKREDLLKVAAAGPLAGFSLGFVLFLVGF  368 (530)
Q Consensus       339 ----~~~RkalfdIAlAGPLAg~llAl~ll~iGl  368 (530)
                          .++.++++.|.+|||++|+++|++++.+-+
T Consensus        86 ~~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~  119 (449)
T PRK10779         86 HAFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVF  119 (449)
T ss_pred             hhhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence                123578899999999999999998865443

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=99.33  E-value=2.2e-11  Score=120.24  Aligned_cols=128  Identities=26%  Similarity=0.325  Sum_probs=84.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceecccceEEecccccCCccceee-------eeec-chh
Q 009620          283 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLK-------VAAA-GPL  354 (530)
Q Consensus       283 l~~glp~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~LgtFGAvi~~~s~~~~Rkalfd-------IAlA-GPL  354 (530)
                      +.++....++++.-+..||+||...++++|++..      .+.++.+|++...+..+.+.+..+.       +++| ||+
T Consensus        41 ~~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~------~~~i~~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~algpl  114 (230)
T COG1994          41 LGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLL------LALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPL  114 (230)
T ss_pred             HhhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHH------HHHHHhccceeeecCcCcCHHHHhhhhccchhHHHHHHHH
Confidence            4455555555777899999999999999999987      4444346667766665555444444       4455 666


Q ss_pred             hHHHHHHHHHHHHhhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 009620          355 AGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGE  434 (530)
Q Consensus       355 Ag~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtafNLLPigp  434 (530)
                      .|+++++++ ....  +..           ...+                    +....+...+.+|+++++|||+|++|
T Consensus       115 ~ni~la~~~-~~~~--~~~-----------~~~~--------------------~~~~~~~~la~~Nl~L~lFNLiPi~P  160 (230)
T COG1994         115 TNIALAVLG-LLAL--SLF-----------LYHS--------------------VLFAFLAALALVNLVLALFNLLPIPP  160 (230)
T ss_pred             HHHHHHHHH-HHhh--ccc-----------ccch--------------------hHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            665555443 1110  000           0000                    00112335677999999999999999


Q ss_pred             CChHHHHHHHhhhHHH
Q 009620          435 LDGGRIAFALWGRKAS  450 (530)
Q Consensus       435 LDGGRIl~Allgrr~a  450 (530)
                      |||||++++++.++..
T Consensus       161 LDGg~vlr~~~~~~~~  176 (230)
T COG1994         161 LDGGRVLRALLPRRYG  176 (230)
T ss_pred             CChHHHHHHHccHHHH
Confidence            9999999999888765

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=98.88  E-value=1.9e-09  Score=111.52  Aligned_cols=242  Identities=13%  Similarity=0.040  Sum_probs=138.5

Q ss_pred             cccccceeeeccccccCceEEEEeccCCchHHHHHHHHHHHHhhhCCceEEEEEecCCCCCcEEEEEeCCCCCCCCCChh
Q 009620          166 QVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVP  245 (530)
Q Consensus       166 ~~Fg~dtF~~t~~~~~~~gvi~rGnLR~~~e~~y~~l~~~l~~~fGd~y~lfl~~~~~~~kPv~~v~P~~~~~p~~~~~~  245 (530)
                      .+++.++|+.....+ ...+++.|.+.......+..+...+  ..|..+         ...|+..   +  ..   ..  
T Consensus        82 ~~~~~~~f~~~~~~~-~~~~~~~Gp~~n~i~~~~~~~~~~~--~~G~~~---------~~~~~~~---~--v~---~~--  139 (375)
T COG0750          82 PEPRPRAFNAKSVWQ-RIAIVFAGPLFNFILAIVLFVVLFF--VIGLVP---------VASPVVG---E--VA---PK--  139 (375)
T ss_pred             cCcchhhhhcccccc-hhheeechHHHHHHHHHHHHHhhhe--Eeeeee---------eccCeee---e--cC---CC--
Confidence            588899999999999 9999999999988766665544433  223111         1112211   0  00   00  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccchhccccchHHHHh------hHHHHHHHHHHHHHH--HHHHHHHHHHcCCcccC
Q 009620          246 EWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTN------GLPGALVTALVIGVH--ELGHILAAKSTGVELGV  317 (530)
Q Consensus       246 ~~~~~~l~~l~Tl~Tt~~ag~~~L~~~~~~~~~~~~~l~~------glp~aL~Ll~iL~iH--ElGH~laAr~~Gvk~s~  317 (530)
                               ..+..+.+..|...+..|- +...+++....      +.++.  .+.+.+.|  +..|..+++.++.....
T Consensus       140 ---------s~a~~a~l~~Gd~iv~~~~-~~i~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~  207 (375)
T COG0750         140 ---------SAAALAGLRPGDRIVAVDG-EKVASWDDVRRLLVAAAGDVFN--LLTILVIRLDGEAHAVAAEIIKSLGLT  207 (375)
T ss_pred             ---------CHHHHcCCCCCCEEEeECC-EEccCHHHHHHHHHhccCCccc--ceEEEEEeccceeeeccccceeeEeee
Confidence                     0112223334433333221 11222322222      22222  34567788  99999999988888888


Q ss_pred             ccccccceecccceEEe--cccccCC-----ccceeeeeecchhhHHHHHHHHHHHHhhcCCCCCccccccccchhhhhh
Q 009620          318 PYFVPSWQIGSFGAITR--IRNIVSK-----REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL  390 (530)
Q Consensus       318 P~fIP~i~LgtFGAvi~--~~s~~~~-----RkalfdIAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L  390 (530)
                      |+++| ...+..++.++  ..+..++     ++...++..+++++.. +.-...++.+.+...    .......+..+.+
T Consensus       208 P~~~~-~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~~~-v~~~~~~~~~~~~~l----~~~~~~~~~~~~l  281 (375)
T COG0750         208 PVVIP-LKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVGLA-VEKTGRLVKLTLKML----KKLITGDLSLKNL  281 (375)
T ss_pred             cceec-cCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHHHH-HHHHHHHHHHHHHHH----HHheecccccccc
Confidence            98877 45555655443  3334444     7889999999999943 333333333322100    0000011112222


Q ss_pred             hhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhhHH
Q 009620          391 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKA  449 (530)
Q Consensus       391 ~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtafNLLPigpLDGGRIl~Allgrr~  449 (530)
                      .|.+.....+....  .....|++.+++|+|+.++++||+|+++|||||++++++.+..
T Consensus       282 ~Gpi~i~~~~~~~~--~~~~~~~l~~~~~lsi~lg~lNllP~p~LDGG~i~~~~~e~~~  338 (375)
T COG0750         282 SGPIGIAKIAGAAA--SLGLINLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEALR  338 (375)
T ss_pred             cCceehhhhhhHHH--hhHHHHHHHHHHHHHHHHHHHhccCCCccCccHHHHHHHHHHh
Confidence            22221111111000  1234689999999999999999999999999999999987654

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=97.32  E-value=0.00062  Score=66.40  Aligned_cols=65  Identities=31%  Similarity=0.274  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCcccCccccccceecc-cceEEecccccCCccceeeeeecchhhHHHHHHHHHHHH
Q 009620          295 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGS-FGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  367 (530)
Q Consensus       295 ~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~Lgt-FGAvi~~~s~~~~RkalfdIAlAGPLAg~llAl~ll~iG  367 (530)
                      ....+||+||.++|...|-++.      .+.+.+ -++.+..+.  +++...+.++.|||++..+++..++..+
T Consensus        23 l~t~~HE~gHal~a~l~G~~v~------~i~l~~~~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   23 LVTFVHELGHALAALLTGGRVK------GIVLFPDGSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc------eEEEEeCCCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            4578999999999999999999      444433 466777666  5666789999999999999887776655

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=96.30  E-value=0.012  Score=61.16  Aligned_cols=82  Identities=28%  Similarity=0.409  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcc--ccc-------c------ceecccceEEecccccC-----------
Q 009620          287 LPGALVTALVIGVHELGHILAAKSTGVELGVPY--FVP-------S------WQIGSFGAITRIRNIVS-----------  340 (530)
Q Consensus       287 lp~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~--fIP-------~------i~LgtFGAvi~~~s~~~-----------  340 (530)
                      +.+.+.+...+.+||+||+|.||++|+++....  |-|       .      +...+.|++.++.....           
T Consensus         6 i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv~~~~~~~~~~~~~~~~~~   85 (375)
T COG0750           6 IAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYVKMLGEDAEEVVLKGPEPR   85 (375)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceEEEecCccccccccccCcc
Confidence            334556667889999999999999999998421  112       0      12345666655432111           


Q ss_pred             -------CccceeeeeecchhhHHHHHHHHHHHHh
Q 009620          341 -------KREDLLKVAAAGPLAGFSLGFVLFLVGF  368 (530)
Q Consensus       341 -------~RkalfdIAlAGPLAg~llAl~ll~iGl  368 (530)
                             +-+..+.+-+|||+.|++.++...+...
T Consensus        86 ~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          86 PRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             hhhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence                   1123678999999999998777765543

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.012  Score=63.33  Aligned_cols=82  Identities=28%  Similarity=0.319  Sum_probs=53.1

Q ss_pred             HhhHHHH-HHHHHHHHHHHHHHHHHHHHcCCcccCccccccceecccceEEecccc----cCCccceeeeeecchhhHHH
Q 009620          284 TNGLPGA-LVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNI----VSKREDLLKVAAAGPLAGFS  358 (530)
Q Consensus       284 ~~glp~a-L~Ll~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~LgtFGAvi~~~s~----~~~RkalfdIAlAGPLAg~l  358 (530)
                      +.+++|. ..++..+.+||+||+|||.+.|+++..  |==++..--=||++.+...    .+.- ....|--||-.-||+
T Consensus       120 l~~I~yf~t~lvi~~vvHElGHalAA~segV~vng--fgIfi~aiyPgafvdl~~dhLqsl~~f-r~LrIfcAGIWHNfv  196 (484)
T KOG2921|consen  120 LSGIAYFLTSLVITVVVHELGHALAAASEGVQVNG--FGIFIAAIYPGAFVDLDNDHLQSLPSF-RALRIFCAGIWHNFV  196 (484)
T ss_pred             cccchhhhhhHHHHHHHHHhhHHHHHHhcCceeee--eEEEEEEEcCchhhhhhhhHHhhcchH-HHHHHHhhhHHHHHH
Confidence            3455544 456678889999999999999999972  1001111112566655321    1222 245788999999999


Q ss_pred             HHHHHHHHHh
Q 009620          359 LGFVLFLVGF  368 (530)
Q Consensus       359 lAl~ll~iGl  368 (530)
                      +|+++.+.-.
T Consensus       197 fallc~lal~  206 (484)
T KOG2921|consen  197 FALLCVLALF  206 (484)
T ss_pred             HHHHHHHHHH
Confidence            9988865443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	530
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	8e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Length = 224

 Score = 78.8 bits (194), Expect = 8e-17
 Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 46/212 (21%)

Query: 273 LLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI 332
           ++     +N         ++  + + +HELGH   AK  GV++     +P       G +
Sbjct: 27  VIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGV 80

Query: 333 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAG 392
             +  I  + E  L++  AGPL  F +G VL +V   F  +     +             
Sbjct: 81  AMMDKIPKEGE--LRIGIAGPLVSFIIGIVLLIVSQFFDININGYPL------------- 125

Query: 393 GFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRK 448
                                L   +   L++   N IPA  +DGGRI  A+    +G  
Sbjct: 126 ---------------------LYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKKYGYL 164

Query: 449 ASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFF 480
            ST++       L L  L   +    ++L+  
Sbjct: 165 KSTKIAANIGKSLALIMLLFGLLSMNIILILV 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 70/450 (15%), Positives = 122/450 (27%), Gaps = 125/450 (27%)

Query: 123 DTKGGVQQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYE 182
           D + G +      ++ S      V   D    +      IL  +    D   ++      
Sbjct: 8   DFETG-EHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEI--DHIIMSKDAVSG 63

Query: 183 GGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLL--VNPEDDKPVAVVVPRKTLQPE 240
              LF   L  +  +  +K    ++      YK FL+  +  E  +P        T    
Sbjct: 64  TLRLF-WTLLSKQEEMVQKF---VEEVLRINYK-FLMSPIKTEQRQP-----SMMTRMYI 113

Query: 241 TTAVPEWFAAGAFGLVTVFTLLLRNVP------ALQSNLLSTFDNLNLLTNGLPGALVTA 294
                 +          VF     NV        L+  LL      N+L +G+ G+  T 
Sbjct: 114 EQRDRLY------NDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 295 LVIGVHELGHILAAKSTGVELGVPY--------------------------FVPSWQIGS 328
           + + V          S  V+  + +                            P+W   S
Sbjct: 166 VALDV--------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 329 FGAIT----------RIRNIVSKR---EDLL---KVAAAGPLAGFSLG-FVLFL-----V 366
             +             +R ++  +     LL    V  A     F+L   +L       V
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 367 GFIFPPSDGIGIVVD--ASVFHESFLAGGFAKLLLGDVLKDGTP---ISVNPLVIWAWAG 421
                 +    I +D  +       +     K L  D      P   ++ NP  +     
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRL----- 330

Query: 422 LLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT--FYWVVLVF 479
                  SI A  +  G   +  W      +LT  +I+   L+ L        +  + VF
Sbjct: 331 -------SIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 480 FLQRGPIAPLSEEITDPDDKYIALGVLVLF 509
                           P   +I   +L L 
Sbjct: 382 ----------------PPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	530
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.91

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=2.4e-24  Score=210.07  Aligned_cols=120  Identities=30%  Similarity=0.446  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceecccceEEecccccCCccceeeeeecchhhHHHHHHHHHHHH
Q 009620          288 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  367 (530)
Q Consensus       288 p~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~LgtFGAvi~~~s~~~~RkalfdIAlAGPLAg~llAl~ll~iG  367 (530)
                      .++++++.++.+||+||+++||++|+++....      +.+||+++++++.  .|+++++|++|||++|++++++++.+.
T Consensus        42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~i~------l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~~~~~~  113 (224)
T 3b4r_A           42 VLFILLFVSVVLHELGHSYVAKKYGVKIEKIL------LLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIVLLIVS  113 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE------ECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccccEE------EEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHHHHHHH
Confidence            77888899999999999999999999999544      4458999988763  458899999999999999998876654


Q ss_pred             hhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 009620          368 FIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR  447 (530)
Q Consensus       368 l~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtafNLLPigpLDGGRIl~Allgr  447 (530)
                      ...+..             .                    .. ...+.+++|+|+++++|||+|++|||||||+++++++
T Consensus       114 ~~~~~~-------------~--------------------~~-~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~  159 (224)
T 3b4r_A          114 QFFDIN-------------I--------------------NG-YPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK  159 (224)
T ss_dssp             TTCCCE-------------E--------------------TT-EEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred             HHccCc-------------c--------------------hH-HHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence            321100             0                    00 1234567999999999999999999999999999887


Q ss_pred             HH
Q 009620          448 KA  449 (530)
Q Consensus       448 r~  449 (530)
                      +.
T Consensus       160 ~~  161 (224)
T 3b4r_A          160 KY  161 (224)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00