Citrus Sinensis ID: 009632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
Protein Sequence
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHcccccHHHHHHHHHcHHHHHHHccHHHHHHcHHHHHHHcccccHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHH
Coil and Loop (DISEMBL)
mamvdeplyPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELipflsenndddDEVLLAMAEELGVFipyvggvehahvllppletlctveetCVRDKAVESLCRIGsqmresdlvdwYIPLVKRLAAGEWFTARVSACGLfhiaypsapdILKTELRSIYTQLcqddmpmvRRSAASNLgkfaatvepahlkTDIMSIFEdltqddqdSVRLLAVEGCAAlgkllepqdcvahILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrmdlvPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCvkelssdssQHVRSALASVIMGmapllgkdatIEQLLPIFLSLlkdefpdvRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAsqlgvgffddKLGALCMQWLQDKVYSIRDAAANNLKRLAEefgpewamqhitpqvleminnphyLYRMTILRAISLLapvmgseitcsrllpvvinaskdrylnl
Flexible Loop (DISEMBL)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIaralgeertrkelipflsennddDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCrigsqmresdlvdWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEItcsrllpvvinaskdrylnl
Low Complexity Region (SEG)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL
Disordered region (IsUnstruct)
******PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS*****DDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL******HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA********
Disordered Region (DISOPRED)
*AM*DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL
Disordered Region (DISEMBL)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE**********SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL
Disordered Region (DISPRO)
*****EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	530	2.2.26 [Sep-21-2011]
Q38950	587	Serine/threonine-protein	yes	no	1.0	0.902	0.937	0.0
Q38951	587	Serine/threonine-protein	no	no	1.0	0.902	0.920	0.0
Q38845	588	Serine/threonine-protein	no	no	0.924	0.833	0.879	0.0
Q32PI5	589	Serine/threonine-protein	yes	no	0.992	0.893	0.598	0.0
P54612	589	Serine/threonine-protein	yes	no	0.992	0.893	0.598	0.0
Q76MZ3	589	Serine/threonine-protein	yes	no	0.992	0.893	0.598	0.0
P30153	589	Serine/threonine-protein	yes	no	0.992	0.893	0.598	0.0
P54613	602	Serine/threonine-protein	no	no	0.992	0.873	0.590	1e-178
Q4QQT4	601	Serine/threonine-protein	no	no	0.992	0.875	0.590	1e-176
P36875	395	Protein phosphatase PP2A	N/A	no	0.635	0.853	0.893	1e-176

>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2

 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/530 (93%), Positives = 519/530 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDR  N+
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNI 530

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/530 (92%), Positives = 511/530 (96%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MVDEPLYPIAVLIDELKNDDIQ RLNSI+RLS IARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELG FI YVGGVE+A+VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRES
Sbjct: 61  DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ + PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVR
Sbjct: 121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAAT+E AHLKTDIMS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAY RLL DNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFD+KLGALCMQWLQDKV+SIR+AAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           LEMINNPHYLYRMTILRA+SLLAPVMGSEITCS+LLP VI ASKDR  N+
Sbjct: 481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNI 530

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score =  976 bits (2522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/530 (87%), Positives = 505/530 (95%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN+DDD
Sbjct: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E+
Sbjct: 61  DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ ++PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVR
Sbjct: 121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AASNLGKFA TVE   L  +IM++F+DLT+DDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 RILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCR+LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKD+TIE LL
Sbjct: 301 AGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLASQLG+GFFDDKLGALCMQWLQDKVYSIR+AAANNLKRLAEEFGPEWAMQH+ PQV
Sbjct: 421 VPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L+M+NNPHYL+RM +LRAISL+APVMGSEITCS+ LPVV+ ASKDR  N+
Sbjct: 481 LDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNI 530

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  637 bits (1642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/530 (59%), Positives = 403/530 (76%), Gaps = 4/530 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/530 (59%), Positives = 402/530 (75%), Gaps = 4/530 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/530 (59%), Positives = 402/530 (75%), Gaps = 4/530 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/530 (59%), Positives = 402/530 (75%), Gaps = 4/530 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  624 bits (1610), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/530 (59%), Positives = 400/530 (75%), Gaps = 4/530 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 20  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 79

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG + AH LLPPLE+L TVEET VRDKAVESL +I  +     L  
Sbjct: 80  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 139

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AA
Sbjct: 140 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 199

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E   +K++I+ +F +L  D+QDSVRLLAVE C ++ +LL   D  A ++P
Sbjct: 200 SKLGEFAKVLELDSVKSEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 259

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL  AVGP+ T  DL+PA+  LL+D EAEVR AAA KV
Sbjct: 260 TLRQAAEDKSWRVRYMVADKFSELQRAVGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKV 319

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            + C  L  E    + +  ILPC+KEL SD++QHV+SALASVIMG++ +LGK+ TIE LL
Sbjct: 320 KELCENLPIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLL 379

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 380 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 439

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I P+V
Sbjct: 440 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKV 499

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M N+P+YL+RMT L  I++L+   G EIT  ++LP+V+  + D+  N+
Sbjct: 500 LVMANDPNYLHRMTTLFCINVLSEACGQEITTKQMLPIVLKMAGDQVANV 549

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1

 Score =  620 bits (1598), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 313/530 (59%), Positives = 398/530 (75%), Gaps = 4/530 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 19  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 78

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG + AH LLPPLE+L TVEET VRDKAVESL +I  +     L  
Sbjct: 79  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 138

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AA
Sbjct: 139 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 198

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E   +KT+I+ +F +L  D+QDSVRLLAVE C ++ +LL   D  A ++P
Sbjct: 199 SKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 258

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGP+    DL+PA+  LLRD EAEVR AAA KV
Sbjct: 259 TLRQAAEDKSWRVRYMVADKFSELQKAVGPKIALSDLIPAFQSLLRDCEAEVRAAAAHKV 318

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            + C  L  E    + +  ILP +KEL SD++QHV+SALASVIMG++ +LGK+ TIE LL
Sbjct: 319 RELCENLPTEGRETVIMNQILPYIKELVSDTNQHVKSALASVIMGLSTVLGKENTIEHLL 378

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 379 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 438

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I P+V
Sbjct: 439 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKV 498

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M N+P+YL+RMT L  I+ L+   G EIT  ++LP+V+  + D+  N+
Sbjct: 499 LVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANV 548

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Rattus norvegicus (taxid: 10116)

>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1

 Score =  620 bits (1598), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 302/338 (89%), Positives = 322/338 (95%), Gaps = 1/338 (0%)

Query: 194 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK 253
           VE AHLKTDIMS+F+DLTQDDQDS R LAVEGCAALGKLLEPQDC+AHILPVIVNFSQDK
Sbjct: 1   VEAAHLKTDIMSVFDDLTQDDQDSFRFLAVEGCAALGKLLEPQDCLAHILPVIVNFSQDK 60

Query: 254 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313
           SWRVRYMVANQLYELCEAVGP+ T+ +LVPAYVRLLRDN AEVRIAAAGKV+KF RIL+P
Sbjct: 61  SWRVRYMVANQLYELCEAVGPDSTKTELVPAYVRLLRDNVAEVRIAAAGKVSKFSRILSP 120

Query: 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 373
           ELAIQHILPCVKELS+DSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPD
Sbjct: 121 ELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPD 180

Query: 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433
           VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF
Sbjct: 181 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 240

Query: 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRL-AEEFGPEWAMQHITPQVLEMINNPHYLYR 492
           DDKLGAL MQWL+DK YSIR+AAANN+KRL AEEFGPEWAMQHI PQVL+MIN+PHYLYR
Sbjct: 241 DDKLGALIMQWLKDKEYSIRNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYLYR 300

Query: 493 MTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           MTIL AISLLAPV+GSEIT + LLP+V+NASKDR  N+
Sbjct: 301 MTILHAISLLAPVLGSEITSTNLLPLVVNASKDRVPNI 338

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Pisum sativum (taxid: 3888)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
255576493	587	serine/threonine protein phosphatase 2a	1.0	0.902	0.966	0.0
449434642	587	PREDICTED: serine/threonine-protein phos	1.0	0.902	0.956	0.0
224101693	586	predicted protein [Populus trichocarpa]	1.0	0.904	0.954	0.0
353259711	587	serine/threonine protein phosphatase 2a	1.0	0.902	0.952	0.0
224108518	587	predicted protein [Populus trichocarpa]	1.0	0.902	0.941	0.0
15230896	587	protein phosphatase 2A subunit A2 [Arabi	1.0	0.902	0.937	0.0
297818092	587	hypothetical protein ARALYDRAFT_904748 [	1.0	0.902	0.935	0.0
225455902	587	PREDICTED: serine/threonine-protein phos	1.0	0.902	0.943	0.0
79313513	544	protein phosphatase 2A subunit A2 [Arabi	0.905	0.882	0.942	0.0
297734191	642	unnamed protein product [Vitis vinifera]	1.0	0.825	0.943	0.0

>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score = 1052 bits (2720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/530 (96%), Positives = 521/530 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDW+IPLVKRLAAGEWFTARVSACGLFHIAYPSAPD+LK ELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDVLKAELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM+HI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMRHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           LEM+ NPHYLYRMTILRAISLLAPVMGSEITCS+LLPVV  ASKDR  N+
Sbjct: 481 LEMVTNPHYLYRMTILRAISLLAPVMGSEITCSKLLPVVATASKDRVPNI 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]

 Score = 1048 bits (2710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/530 (95%), Positives = 524/530 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDW+IPLVKRLAAGEWFTARVSACGLFHIAYPSAP++LKTELRSIY QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEMLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAA+NLGKFAAT+EPAHLKTDIM+IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RSAATNLGKFAATIEPAHLKTDIMTIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVL 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRIL+PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L+MINNPHYLYRMT+LRA+SLLAPVMGSEITC++LLPVVI++SKDR  N+
Sbjct: 481 LDMINNPHYLYRMTVLRAVSLLAPVMGSEITCTKLLPVVISSSKDRVPNI 530

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101693|ref|XP_002312385.1| predicted protein [Populus trichocarpa] gi|222852205|gb|EEE89752.1| predicted protein [Populus trichocarpa]

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/530 (95%), Positives = 523/530 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ V+EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTVEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIP+VGGV++AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE+
Sbjct: 61  DEVLLAMAEELGVFIPFVGGVDYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRET 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+W+IPLVKRLAAGEWFTARVSACGLFHIAYPSAPD LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVEWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDTLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ+CVA
Sbjct: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQNCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRIL+PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFD+KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA+QHI PQV
Sbjct: 421 IPLLASQLGVGFFDEKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAVQHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           LEM  NPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVVINASKDR  N+
Sbjct: 481 LEMSTNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVINASKDRVPNI 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353259711|gb|AEQ75494.1| serine/threonine protein phosphatase 2a regulatory subunit A [Rosa multiflora]

 Score = 1038 bits (2684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/530 (95%), Positives = 518/530 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGE+RTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEDRTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREG 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV W+IPLVKRLAAGEWFTARVSACGLFHIAYPSA + LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVSWFIPLVKRLAAGEWFTARVSACGLFHIAYPSASETLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAA+NLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RSAATNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+PTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA +LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMALVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLG+LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGSLCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           LEMI+NPHYLYRMTILRAI LLAPVMGSEITCS+LLPVV+ ASKDR  N+
Sbjct: 481 LEMIDNPHYLYRMTILRAICLLAPVMGSEITCSKLLPVVVTASKDRVPNI 530

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108518|ref|XP_002314877.1| predicted protein [Populus trichocarpa] gi|118484366|gb|ABK94060.1| unknown [Populus trichocarpa] gi|222863917|gb|EEF01048.1| predicted protein [Populus trichocarpa]

 Score = 1032 bits (2668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/530 (94%), Positives = 519/530 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ ++EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTMEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLA+AEELGVFIPYVGGVE+AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE+
Sbjct: 61  DEVLLALAEELGVFIPYVGGVEYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRET 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDW+IPLVKRLAAGEWFT+RVSACGLFHIAYPSAP++LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTSRVSACGLFHIAYPSAPEMLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVE  HLK DI+SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVESVHLKADILSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRIL+PE AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPEHAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM+HI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMEHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           LEM  NPHYLYRMTI+RA+SLLAPVMGSEITCS+LLPVV+NASKDR  N+
Sbjct: 481 LEMSTNPHYLYRMTIIRAVSLLAPVMGSEITCSKLLPVVVNASKDRVSNI 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230896|ref|NP_189208.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|83287930|sp|Q38950.2|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd regulatory subunit [Arabidopsis thaliana] gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana] gi|30725386|gb|AAP37715.1| At3g25800 [Arabidopsis thaliana] gi|332643548|gb|AEE77069.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/530 (93%), Positives = 519/530 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDR  N+
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNI 530

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818092|ref|XP_002876929.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata] gi|297322767|gb|EFH53188.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata]

 Score = 1028 bits (2659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/530 (93%), Positives = 520/530 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL +VEETCVR+KAVESLCR+GSQM+ES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSSVEETCVREKAVESLCRVGSQMKES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +IPLVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFIPLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAAT+E AHLKTDIMS+F+DLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATIESAHLKTDIMSMFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           LEMINNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDR  N+
Sbjct: 481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNI 530

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455902|ref|XP_002276180.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Vitis vinifera]

 Score = 1028 bits (2658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/530 (94%), Positives = 519/530 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAM+DEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHA+VLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ +IPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR+IY+QLCQDDMPMVR
Sbjct: 121 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVE AHLK DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATI+QLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDR  N+
Sbjct: 481 LDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNI 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79313513|ref|NP_001030769.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|332643549|gb|AEE77070.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/526 (94%), Positives = 517/526 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 526
           LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDR
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDR 526

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734191|emb|CBI15438.3| unnamed protein product [Vitis vinifera]

 Score = 1026 bits (2654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/530 (94%), Positives = 519/530 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAM+DEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 56  MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 115

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHA+VLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE 
Sbjct: 116 DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 175

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ +IPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR+IY+QLCQDDMPMVR
Sbjct: 176 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 235

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVE AHLK DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 236 RSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 295

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 296 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 355

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATI+QLL
Sbjct: 356 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLL 415

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 416 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 475

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHI PQV
Sbjct: 476 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQV 535

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDR  N+
Sbjct: 536 LDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNI 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
TAIR|locus:2085994	587	PP2AA2 "protein phosphatase 2A	1.0	0.902	0.937	1e-265
TAIR|locus:2205354	587	PP2AA3 "AT1G13320" [Arabidopsi	1.0	0.902	0.920	3e-259
TAIR|locus:2031165	588	RCN1 "AT1G25490" [Arabidopsis	1.0	0.901	0.879	4.8e-252
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.992	0.893	0.598	1.9e-163
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.992	0.893	0.598	1.9e-163
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.992	0.893	0.598	3.1e-163
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.992	0.893	0.598	3.9e-163
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.992	0.893	0.598	3.9e-163
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.992	0.893	0.598	3.9e-163
RGD|620907	589	Ppp2r1a "protein phosphatase 2	0.992	0.893	0.598	3.9e-163

TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2556 (904.8 bits), Expect = 1.0e-265, P = 1.0e-265
 Identities = 497/530 (93%), Positives = 519/530 (97%)

Query:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct:     1 MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct:    61 DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query:   121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct:   121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query:   181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct:   181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
             HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
             AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct:   301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDR  N+
Sbjct:   481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNI 530

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)]

 Score = 2495 (883.3 bits), Expect = 3.0e-259, P = 3.0e-259
 Identities = 488/530 (92%), Positives = 511/530 (96%)

Query:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             M+MVDEPLYPIAVLIDELKNDDIQ RLNSI+RLS IARALGEERTRKELIPFLSENNDDD
Sbjct:     1 MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELG FI YVGGVE+A+VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRES
Sbjct:    61 DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query:   121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLV+ + PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVR
Sbjct:   121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query:   181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             R+AA+NLGKFAAT+E AHLKTDIMS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct:   181 RAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
             HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAY RLL DNEAEVRIAA
Sbjct:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAA 300

Query:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
             AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             IPLLASQLGVGFFD+KLGALCMQWLQDKV+SIR+AAANNLKRLAEEFGPEWAMQHI PQV
Sbjct:   421 IPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             LEMINNPHYLYRMTILRA+SLLAPVMGSEITCS+LLP VI ASKDR  N+
Sbjct:   481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNI 530

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 2427 (859.4 bits), Expect = 4.8e-252, P = 4.8e-252
 Identities = 466/530 (87%), Positives = 505/530 (95%)

Query:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN+DDD
Sbjct:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E+
Sbjct:    61 DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query:   121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLV+ ++PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVR
Sbjct:   121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query:   181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             R+AASNLGKFA TVE   L  +IM++F+DLT+DDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct:   181 RAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
              ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR DLVPAYVRLLRDNEAEVRIAA
Sbjct:   241 RILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAA 300

Query:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
             AGKVTKFCR+LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKD+TIE LL
Sbjct:   301 AGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLASQLG+GFFDDKLGALCMQWLQDKVYSIR+AAANNLKRLAEEFGPEWAMQH+ PQV
Sbjct:   421 VPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQV 480

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             L+M+NNPHYL+RM +LRAISL+APVMGSEITCS+ LPVV+ ASKDR  N+
Sbjct:   481 LDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNI 530

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IGI;ISS

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 1591 (565.1 bits), Expect = 1.9e-163, P = 1.9e-163
 Identities = 317/530 (59%), Positives = 403/530 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 1591 (565.1 bits), Expect = 1.9e-163, P = 1.9e-163
 Identities = 317/530 (59%), Positives = 403/530 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 1589 (564.4 bits), Expect = 3.1e-163, P = 3.1e-163
 Identities = 317/530 (59%), Positives = 402/530 (75%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1588 (564.1 bits), Expect = 3.9e-163, P = 3.9e-163
 Identities = 317/530 (59%), Positives = 402/530 (75%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 1588 (564.1 bits), Expect = 3.9e-163, P = 3.9e-163
 Identities = 317/530 (59%), Positives = 402/530 (75%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 1588 (564.1 bits), Expect = 3.9e-163, P = 3.9e-163
 Identities = 317/530 (59%), Positives = 402/530 (75%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 1588 (564.1 bits), Expect = 3.9e-163, P = 3.9e-163
 Identities = 317/530 (59%), Positives = 402/530 (75%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0003823 "antigen binding" evidence=IEA;ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36179	2AAA_DROME	No assigned EC number	0.5976	0.9547	0.8561	yes	no
Q54QR9	2AAA_DICDI	No assigned EC number	0.5697	0.9849	0.8938	yes	no
P36875	2AAA_PEA	No assigned EC number	0.8934	0.6358	0.8531	N/A	no
Q32PI5	2AAA_BOVIN	No assigned EC number	0.5981	0.9924	0.8930	yes	no
Q38845	2AAA_ARATH	No assigned EC number	0.8792	0.9245	0.8333	no	no
P30153	2AAA_HUMAN	No assigned EC number	0.5981	0.9924	0.8930	yes	no
P31383	2AAA_YEAST	No assigned EC number	0.4585	0.9886	0.8251	yes	no
P54612	2AAA_PIG	No assigned EC number	0.5981	0.9924	0.8930	yes	no
Q09543	2AAA_CAEEL	No assigned EC number	0.5093	0.9924	0.8915	yes	no
Q38950	2AAB_ARATH	No assigned EC number	0.9377	1.0	0.9028	yes	no
Q38951	2AAG_ARATH	No assigned EC number	0.9207	1.0	0.9028	no	no
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.5981	0.9924	0.8930	yes	no
Q9UT08	2AAA_SCHPO	No assigned EC number	0.5252	0.9660	0.8677	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VIII0497 hypothetical protein (587 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	530
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	8e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-04

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 59/265 (22%), Positives = 92/265 (34%), Gaps = 43/265 (16%)

Query: 43  ERTRKELIPFLSENNDDDDEVL-LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC 101
                E    L +  +D+D ++ L+ A  LG       G E A   +P L  L + E+  
Sbjct: 38  LELAPEAADELLKLLEDEDLLVRLSAAVALGEL-----GSEEA---VPLLRELLSDEDPR 89

Query: 102 VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHI----AYPSA 156
           VRD A ++L  +G             PLV+ L           +A  L  +    A    
Sbjct: 90  VRDAAADALGELGDPEA-------VPPLVELLENDENEGVRAAAARALGKLGDERALDPL 142

Query: 157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD 216
            + L+ E            +  VR +AA  LG+         L         +L +D+  
Sbjct: 143 LEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLI--------ELLEDEDA 194

Query: 217 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276
            VR  A     ALG+L            ++V    D+S  VR            A+G   
Sbjct: 195 DVRRAAAS---ALGQLGSE---NVEAADLLVKALSDESLEVR-------KAALLALGEIG 241

Query: 277 TRMDLVPAYVRLLRDNEAEVRIAAA 301
              + V A  + L D +  + + AA
Sbjct: 242 DE-EAVDALAKALEDEDVILALLAA 265

Length = 335

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI---QHILPCVKELSSDSSQH 334
           +   +PA V LL  ++  V+  AA  ++      N  +        LP + +L     + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 335 VRSALASV---IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNI 378
           V  A       +                +P  ++LL     D++ N 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	530
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.98
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.97
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.94
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.94
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.94
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.92
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.91
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.9
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.89
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.88
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.87
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.87
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.87
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.87
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.87
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.86
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.86
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.85
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.85
PRK09687	280	putative lyase; Provisional	99.82
PRK09687	280	putative lyase; Provisional	99.82
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.79
PTZ00429	746	beta-adaptin; Provisional	99.79
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.78
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.78
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.78
PTZ00429	746	beta-adaptin; Provisional	99.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.76
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.68
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.66
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.61
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.56
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.52
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.5
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.47
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.47
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.45
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.42
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.41
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.41
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.37
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.33
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.31
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.31
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.27
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.26
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.25
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.2
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.2
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.19
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.18
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.17
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.16
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.15
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.15
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.14
TIGR02270	410	conserved hypothetical protein. Members are found	99.13
TIGR02270	410	conserved hypothetical protein. Members are found	99.1
KOG1243	690	consensus Protein kinase [General function predict	99.09
KOG1243	690	consensus Protein kinase [General function predict	99.06
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	99.06
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.05
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.02
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.97
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.97
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.96
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.94
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.92
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	98.89
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.89
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.88
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.86
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.84
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.81
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.81
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.8
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.8
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.73
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.72
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.68
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.68
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.66
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.66
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.64
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.64
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.63
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.63
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.58
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.53
KOG2025	892	consensus Chromosome condensation complex Condensi	98.52
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.51
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.5
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.5
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.5
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.47
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.46
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.45
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.45
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.44
KOG2025	892	consensus Chromosome condensation complex Condensi	98.44
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.43
KOG0567	289	consensus HEAT repeat-containing protein [General	98.43
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.42
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.42
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.42
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.4
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.36
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.33
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.33
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.33
KOG0567	289	consensus HEAT repeat-containing protein [General	98.32
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.3
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.3
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.27
PF05004	309	IFRD: Interferon-related developmental regulator (	98.22
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.21
KOG2956	516	consensus CLIP-associating protein [General functi	98.2
KOG2956	516	consensus CLIP-associating protein [General functi	98.2
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.17
COG5656	970	SXM1 Importin, protein involved in nuclear import	98.15
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	98.14
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.11
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.04
PF05004	309	IFRD: Interferon-related developmental regulator (	98.03
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	98.01
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.99
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.97
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.94
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.94
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.93
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	97.91
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	97.88
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.88
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	97.86
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.86
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.85
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	97.83
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.83
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.82
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	97.82
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	97.73
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.72
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.71
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.69
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.67
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.58
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	97.44
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.44
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.41
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.4
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	97.38
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.36
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.29
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.29
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.26
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.21
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.17
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.17
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	97.16
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.16
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.12
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	97.11
COG5098	1128	Chromosome condensation complex Condensin, subunit	97.1
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.07
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	97.03
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	96.94
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	96.94
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	96.84
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.84
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.72
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.64
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.58
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	96.56
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	96.54
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.54
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.53
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.49
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.37
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	96.28
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.28
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	96.12
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	95.96
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	95.87
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	95.62
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	95.6
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	95.57
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	95.57
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	95.55
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.51
PF05536	543	Neurochondrin: Neurochondrin	95.49
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	95.47
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	95.46
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	95.41
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.32
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	95.19
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	95.16
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.98
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	94.94
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.86
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.86
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	94.84
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.82
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	94.74
KOG2149	393	consensus Uncharacterized conserved protein [Funct	94.69
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	94.68
KOG2005	878	consensus 26S proteasome regulatory complex, subun	94.67
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	94.66
KOG2081	559	consensus Nuclear transport regulator [Intracellul	94.63
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.59
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	94.54
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.51
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.49
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	94.45
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.34
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	94.33
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	94.32
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.16
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	93.96
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	93.89
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	93.86
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	93.86
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	93.81
KOG1048	717	consensus Neural adherens junction protein Plakoph	93.72
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.72
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.59
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	93.56
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	93.54
KOG2973	353	consensus Uncharacterized conserved protein [Funct	93.46
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	93.41
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.32
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	93.32
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	93.24
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	93.23
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	93.21
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.93
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	92.88
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	92.88
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	92.83
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.8
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	92.77
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.71
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	92.65
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	92.61
KOG2149	393	consensus Uncharacterized conserved protein [Funct	92.52
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	92.28
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.22
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	92.09
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	92.06
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	91.91
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	91.71
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	91.67
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	91.55
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	91.37
KOG2081	559	consensus Nuclear transport regulator [Intracellul	91.28
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	91.21
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	91.06
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.95
KOG1048	717	consensus Neural adherens junction protein Plakoph	90.94
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	90.91
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	90.89
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	90.84
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	90.72
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	90.72
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	90.45
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	90.34
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	90.34
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	90.11
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	90.01
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	89.98
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	89.94
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	89.92
KOG2973	353	consensus Uncharacterized conserved protein [Funct	89.74
PF05536	543	Neurochondrin: Neurochondrin	89.69
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	89.65
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	89.6
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.49
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	89.4
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	88.84
KOG2038	988	consensus CAATT-binding transcription factor/60S r	88.82
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	88.71
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	88.41
COG5098	1128	Chromosome condensation complex Condensin, subunit	88.39
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	88.13
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	87.79
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	87.76
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	87.08
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	86.67
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	86.45
KOG2153	704	consensus Protein involved in the nuclear export o	86.28
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	86.02
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	86.01
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	85.86
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	85.75
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	85.44
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	85.31
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	84.1
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	83.8
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	83.72
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	83.69
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	83.34
PF14911	373	MMS22L_C: S-phase genomic integrity recombination	82.31
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	81.88
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	81.36
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	80.94
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	80.45
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	80.07

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-45  Score=362.02  Aligned_cols=524  Identities=56%  Similarity=0.848  Sum_probs=494.3

Q ss_pred             CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhc
Q 009632            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (530)
Q Consensus         7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~   86 (530)
                      ++|+|..++..++++|...|.++.+.+..++..+|.+.++.+++|++.+..+++.+++..++..+|++...+|++++...
T Consensus        80 ~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~  159 (759)
T KOG0211|consen   80 SLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHM  159 (759)
T ss_pred             ccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHH
Confidence            79999999999999999999999999999999999999999999999995599999999999999999999999999999


Q ss_pred             chhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC-hHHHHHHH
Q 009632           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTELR  165 (530)
Q Consensus        87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~l~  165 (530)
                      +++.+..++.+.+..||+.+++.+..++...++......+.|++..+..+++...|.++|.+++..+.... +..+.++.
T Consensus       160 ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr  239 (759)
T KOG0211|consen  160 LLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELR  239 (759)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHH
Confidence            99999999999999999999999999999999988888899999999999888889999999999999988 45889999


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch-hhhhccHH
Q 009632          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DCVAHILP  244 (530)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~  244 (530)
                      +.+.++++|.++.||.++++.++.++..++.+...+.+.|.+.++..|+.+.||.+|++.+..+...+... +..+.+.+
T Consensus       240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~  319 (759)
T KOG0211|consen  240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTE  319 (759)
T ss_pred             HHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhH
Confidence            99999999999999999999999999999998889999999999999999999999999999999998877 77888999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC----HHHHHhhh
Q 009632          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHI  320 (530)
Q Consensus       245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~~l  320 (530)
                      .+.+..+|.+|++|...++.+..+...+|++.+.....+.+...++|+.+++|.+.+.-...++....    ++...+.+
T Consensus       320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~i  399 (759)
T KOG0211|consen  320 SLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSI  399 (759)
T ss_pred             HHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhh
Confidence            99999999999999999999999999999987778899999999999999999999999999988877    44556778


Q ss_pred             hHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHH---hhHHhhhhhchhHHHhh
Q 009632          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIIS---KLDQVNQVIGIDLLSQS  397 (530)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~---~l~~l~~~~~~~~~~~~  397 (530)
                      +|.+..++.|.+..+|.+.+..+..+...+|.+.....+.|.+...++|..+.||.....   .+..+....|..+..+.
T Consensus       400 lp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~s  479 (759)
T KOG0211|consen  400 LPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNS  479 (759)
T ss_pred             hHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhh
Confidence            899999999999999999999999999999988888899999999999999999999994   44455566777888899


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhH
Q 009632          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  477 (530)
Q Consensus       398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~  477 (530)
                      .+|.+..+..+.+|++|.+.++.+..++...|.+++.+.+-+.+...+.|.+..+|++|...+..++..+|.+|....++
T Consensus       480 lLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i  559 (759)
T KOG0211|consen  480 LLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEI  559 (759)
T ss_pred             hhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCCCCC
Q 009632          478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL  530 (530)
Q Consensus       478 ~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~~~v  530 (530)
                      |.+..+..+++|.+|.+.+.++..+++.+|.+.+.++++|.+..+..|++|||
T Consensus       560 ~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanV  612 (759)
T KOG0211|consen  560 PKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANV  612 (759)
T ss_pred             HHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhh
Confidence            99999999999999999999999999999999999999999999999999997

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=289.56  Aligned_cols=489  Identities=19%  Similarity=0.242  Sum_probs=438.3

Q ss_pred             hcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhc
Q 009632           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT   96 (530)
Q Consensus        18 l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~   96 (530)
                      ........|..++..+..++..+..+..+.++.|.+.. ..++.-.-|..++..++..+..+..+.....+.+...++++
T Consensus       168 ~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~  247 (759)
T KOG0211|consen  168 ATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQ  247 (759)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhcc
Confidence            33666777999999999999888888788899999887 34444445666767777666655544567789999999999


Q ss_pred             ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh--HHHHHHHHHHHhhcCC
Q 009632           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLCQD  174 (530)
Q Consensus        97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~l~~~l~~l~~d  174 (530)
                      |.++.||..+..-++.+++.+..+.....+.|.+..+..|++..||..|...+..+...+..  +..+.+.+.+.+..+|
T Consensus       248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d  327 (759)
T KOG0211|consen  248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED  327 (759)
T ss_pred             ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC
Confidence            99999999999999999999999888888999999999999999999998888887776554  5778899999999999


Q ss_pred             CChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC----chhhhhccHHHHHHhc
Q 009632          175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE----PQDCVAHILPVIVNFS  250 (530)
Q Consensus       175 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~  250 (530)
                      .+|.+|.........+...++++.......+.+..+++|...++|.+...-...+.....    ++...+.++|.+..++
T Consensus       328 ~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv  407 (759)
T KOG0211|consen  328 GSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV  407 (759)
T ss_pred             hhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH
Confidence            999999999999999999999977777889999999999999999999999999998887    3445667889999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHH---HHHHHhhCHHHHHhhhhHhHhHh
Q 009632          251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV---TKFCRILNPELAIQHILPCVKEL  327 (530)
Q Consensus       251 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l---~~~~~~~~~~~~~~~l~~~l~~~  327 (530)
                      .|.+..||.+.+..+..+...+|.+.+...+.|.+...++|..++||.+....+   ...-...|.....+..+|.+..+
T Consensus       408 ~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el  487 (759)
T KOG0211|consen  408 LDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL  487 (759)
T ss_pred             hcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence            999999999999999999988998888899999999999999999999999544   44444567778889999999999


Q ss_pred             ccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc
Q 009632          328 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  407 (530)
Q Consensus       328 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~  407 (530)
                      ..|.+|++|.++++.++.++...|..++.+.+.+.+...+.|....+|.+|...+..++..+|.+|....++|.+.....
T Consensus       488 ~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~  567 (759)
T KOG0211|consen  488 AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDL  567 (759)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhc
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999988


Q ss_pred             CCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCC
Q 009632          408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP  487 (530)
Q Consensus       408 ~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~  487 (530)
                      +++|..|.+.+.++..++..+|.+.+.++++|.+..+..|++++||..+++.+..+...+........+.|.+..+..|+
T Consensus       568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~  647 (759)
T KOG0211|consen  568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ  647 (759)
T ss_pred             CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc
Confidence            88999999999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             ChHHHHHHHHHHHHHhhhc
Q 009632          488 HYLYRMTILRAISLLAPVM  506 (530)
Q Consensus       488 ~~~vr~~a~~~l~~i~~~~  506 (530)
                      +.++|..|..+++.+....
T Consensus       648 ~~dvr~~a~~a~~~i~l~~  666 (759)
T KOG0211|consen  648 ELDVRYRAILAFGSIELSR  666 (759)
T ss_pred             ccchhHHHHHHHHHHHHHH
Confidence            9999999999999887653

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.9e-29  Score=246.56  Aligned_cols=505  Identities=18%  Similarity=0.242  Sum_probs=392.9

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc--ccCCchHHHHHHHHHHhccccc----CCCccc
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPY----VGGVEH   83 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~vr~~~~~~l~~~~~~----~~~~~~   83 (530)
                      ++..|+.++.++|...|..|-+.+..+...   .    .++|.|..  -...+|++|..++..+.++...    +. .+.
T Consensus         5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~---~----~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~-~e~   76 (1075)
T KOG2171|consen    5 PLEQLLQQLLSPDNEVRRQAEEALETLAKT---E----PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS-AEV   76 (1075)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhhcc---c----chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC-HHH
Confidence            578899999999999999999998876432   2    26666665  3567899999999888765442    22 222


Q ss_pred             hh-cchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---
Q 009632           84 AH-VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---  159 (530)
Q Consensus        84 ~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---  159 (530)
                      .+ ....+|......+.+.||++-++.+..+++..-++ .|+.+++.+.+..+++++..|+.+..++..+...++..   
T Consensus        77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~  155 (1075)
T KOG2171|consen   77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP  155 (1075)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence            22 33445666778889999999999999999988887 88899999999999999999999999999988887765   


Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hh------hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AH------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (530)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~------~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~  231 (530)
                      +...+++.|.+.++|++..||..++++++.++...+.  ..      ..+.++..+.+.+.++++..-..+.+++..++.
T Consensus       156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e  235 (1075)
T KOG2171|consen  156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE  235 (1075)
T ss_pred             hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence            6779999999999999888999999999999998862  11      123344455566677777778888899988888


Q ss_pred             hcCc--hhhhhccHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCC-----cccccchHHHHHHhcCCCc---------
Q 009632          232 LLEP--QDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGP-----EPTRMDLVPAYVRLLRDNE---------  293 (530)
Q Consensus       232 ~~~~--~~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~---------  293 (530)
                      ..++  ..+...++........+  -+..+|..+.+.+..+++....     ......+++.++.++.|..         
T Consensus       236 ~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d  315 (1075)
T KOG2171|consen  236 SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED  315 (1075)
T ss_pred             hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence            7766  34455666666666655  4578999999999888876211     1134567788877764211         


Q ss_pred             -------HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHH
Q 009632          294 -------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFL  364 (530)
Q Consensus       294 -------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~  364 (530)
                             ..-...|.+++..++-.+|++.+.+.+++.+..++++.+|+-|.+++-+++.+++.+++  ....+++++.++
T Consensus       316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl  395 (1075)
T KOG2171|consen  316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL  395 (1075)
T ss_pred             ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence                   11356788999999999999988899999999999999999999999999999988764  335778999999


Q ss_pred             HhhcCCChHHHHHHHHhhHHhhhhhchh----------------------------------------------HHHhhH
Q 009632          365 SLLKDEFPDVRLNIISKLDQVNQVIGID----------------------------------------------LLSQSL  398 (530)
Q Consensus       365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~----------------------------------------------~~~~~l  398 (530)
                      +.|+|+.+.||.+|+.+++++...++++                                              .+.+.+
T Consensus       396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l  475 (1075)
T KOG2171|consen  396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGL  475 (1075)
T ss_pred             hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            9999999999999999999997654321                                              111223


Q ss_pred             HH-HHHHHhcCCChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHhChhH
Q 009632          399 LP-AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEW  471 (530)
Q Consensus       399 ~~-~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~~~  471 (530)
                      +. .+..+.++++..+|+.++.+++.++...+..+  +.+.++|.+.+.+..    ....+|....+|++.+..+.|++.
T Consensus       476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~  555 (1075)
T KOG2171|consen  476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK  555 (1075)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh
Confidence            33 23335567789999999999999999988777  457899999998864    345789999999999999999664


Q ss_pred             Hh---hhhHHHHHhh---ccCCChHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHhhc
Q 009632          472 AM---QHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINAS  523 (530)
Q Consensus       472 ~~---~~i~~~l~~~---~~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~~l  523 (530)
                      +.   ++++..+...   -.+.+...|...+.+++.+++.+|+++  +++.++|.+.+..
T Consensus       556 F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta  615 (1075)
T KOG2171|consen  556 FLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTA  615 (1075)
T ss_pred             hhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhh
Confidence            33   5566666555   345677889999999999999999764  6888888777643

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.1e-29  Score=236.38  Aligned_cols=508  Identities=22%  Similarity=0.228  Sum_probs=370.9

Q ss_pred             CCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-----------------------------
Q 009632            5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-----------------------------   55 (530)
Q Consensus         5 ~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-----------------------------   55 (530)
                      ++-+..+..|+++-.|+|...|..+...+.+.-..   .+..+.|+=.+..                             
T Consensus         9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~---pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~   85 (885)
T KOG2023|consen    9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLF---PDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPS   85 (885)
T ss_pred             HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---cchhceeeEEEecccccchhHHHHhhhhHhccccccccCCCh
Confidence            44567788899999999999999998887766321   1122222222222                             


Q ss_pred             -------------ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh--
Q 009632           56 -------------NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--  120 (530)
Q Consensus        56 -------------~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--  120 (530)
                                   +-|.++-+|..+...+.+++.. ++-.+++.++|.|.+++..++....+.|+.+|+++++.....  
T Consensus        86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~-~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld  164 (885)
T KOG2023|consen   86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIAST-GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD  164 (885)
T ss_pred             HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecc-cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence                         2234444554444444444443 335678999999999999999999999999999999975541  


Q ss_pred             -----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 009632          121 -----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA  192 (530)
Q Consensus       121 -----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~  192 (530)
                           .-...++|.+.++.+++++..|..|..++......-+..   .....++.+..+.+|++++||+..|.++..+.+
T Consensus       165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle  244 (885)
T KOG2023|consen  165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE  244 (885)
T ss_pred             hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence                 223458899999999999999999999998887766654   568888999999999999999999999999998


Q ss_pred             hhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc-Cc---hhhhhccHHHHHH----------hcC-----
Q 009632          193 TVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP---QDCVAHILPVIVN----------FSQ-----  251 (530)
Q Consensus       193 ~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~---~~~~~~~~~~l~~----------~~~-----  251 (530)
                      ..+.  ......++.++.+..+|.+++|-..|.+.+.++++.- .+   ..+.+.++|.+..          +++     
T Consensus       245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD  324 (885)
T KOG2023|consen  245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED  324 (885)
T ss_pred             hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence            7665  3456678899999999999999999999999998763 22   2345556666643          111     


Q ss_pred             -------------------------------C----------CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC
Q 009632          252 -------------------------------D----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR  290 (530)
Q Consensus       252 -------------------------------d----------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  290 (530)
                                                     |          .+|..|++.+.+|..++..+|++. ...++|.+.+.+.
T Consensus       325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~  403 (885)
T KOG2023|consen  325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLS  403 (885)
T ss_pred             ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcC
Confidence                                           0          139999999999999999999776 6789999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHhhC--HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHH
Q 009632          291 DNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLS  365 (530)
Q Consensus       291 d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~  365 (530)
                      .++|-||++++-+++.+++.+-  -...++.++|.+..++.|+.+-||.-.+.+++++++..-   .+.+...++.-+++
T Consensus       404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~  483 (885)
T KOG2023|consen  404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR  483 (885)
T ss_pred             cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence            9999999999999999998763  335567899999999999999999999999988876543   23444555555666


Q ss_pred             hhcCCChHHHHHHHHhhHHhhhhhchhHH---------------------------------------------HhhHHH
Q 009632          366 LLKDEFPDVRLNIISKLDQVNQVIGIDLL---------------------------------------------SQSLLP  400 (530)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---------------------------------------------~~~l~~  400 (530)
                      .+-|.+..|+++|+++++.+.+..|.+-+                                             .+.++|
T Consensus       484 ~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmP  563 (885)
T KOG2023|consen  484 RLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMP  563 (885)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhcc
Confidence            67799999999999999998765443210                                             112233


Q ss_pred             HHHH---HhcCCChHHHHHHHHHHHHHHhhhChhh---------------------------------------------
Q 009632          401 AIVE---LAEDRHWRVRLAIIEYIPLLASQLGVGF---------------------------------------------  432 (530)
Q Consensus       401 ~l~~---~~~~~~~~~R~~~~~~l~~l~~~~~~~~---------------------------------------------  432 (530)
                      .|.+   .++|++ .--.-.+++++.+++.+|..|                                             
T Consensus       564 PLi~KW~~lsd~D-KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL  642 (885)
T KOG2023|consen  564 PLIEKWELLSDSD-KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDL  642 (885)
T ss_pred             HHHHHHHhcCccc-chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHH
Confidence            3221   122221 111223444444444333221                                             


Q ss_pred             ----------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHHHHH
Q 009632          433 ----------------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMT  494 (530)
Q Consensus       433 ----------------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~vr~~  494 (530)
                                      +...++.++..++.|+.++||..+...+|.+..++.+...  ...++|.+-..++..+..+-.+
T Consensus       643 ~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nN  722 (885)
T KOG2023|consen  643 LSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNN  722 (885)
T ss_pred             HhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHH
Confidence                            1234777888999999999999999999999998743321  2556777666666778889999


Q ss_pred             HHHHHHHHhhhcChHHHHhhHHHHH
Q 009632          495 ILRAISLLAPVMGSEITCSRLLPVV  519 (530)
Q Consensus       495 a~~~l~~i~~~~~~~~~~~~~~p~l  519 (530)
                      |++++|.++..+|.+. ..++-|.+
T Consensus       723 A~WAiGeia~k~g~~~-~~~v~~vl  746 (885)
T KOG2023|consen  723 AIWAIGEIALKMGLKM-KQYVSPVL  746 (885)
T ss_pred             HHHHHHHHHHHhchhh-hhHHHHHH
Confidence            9999999999998653 23444433

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.3e-26  Score=227.68  Aligned_cols=470  Identities=17%  Similarity=0.212  Sum_probs=367.0

Q ss_pred             HHHHHhc-ChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCc--cchhcch
Q 009632           13 VLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV--EHAHVLL   88 (530)
Q Consensus        13 ~l~~~l~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~l~   88 (530)
                      .|++.+. -+.+.+|..-...+..+++...++ .|+++++++.+ ++++++..|..+...|..+...+|+.  .|...+.
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~  161 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL  161 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence            4555554 556778999999999999998888 99999999999 88999999999999999988888753  3567899


Q ss_pred             hHHHhhhcccchHHHHHHHHHHHHHHhhcC--hhhhh--hhHHHHH----HHHhcCCccchhHHHHhHhhhhcCCCCh--
Q 009632           89 PPLETLCTVEETCVRDKAVESLCRIGSQMR--ESDLV--DWYIPLV----KRLAAGEWFTARVSACGLFHIAYPSAPD--  158 (530)
Q Consensus        89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~--~~l~~~l----~~l~~~~~~~~r~~~~~~l~~l~~~~~~--  158 (530)
                      ++|.+-.+|++..||..|+++++.++..++  +....  ..++|.+    ....++++...-..+...+..+....++  
T Consensus       162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l  241 (1075)
T KOG2171|consen  162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL  241 (1075)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence            999999999988899999999999999885  22222  2244533    3334445555556677777777666555  


Q ss_pred             -HHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHHhhcCC----------------
Q 009632          159 -ILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQDD----------------  214 (530)
Q Consensus       159 -~~~~~l~~~l~~l~~d~--~~~vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~~~d~----------------  214 (530)
                       .+..+++.+.++...+.  +..+|..|++.+..++++.+.     ..+.+.+++.+...+.|.                
T Consensus       242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~  321 (1075)
T KOG2171|consen  242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD  321 (1075)
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence             36677777777777655  688999999999999988553     235566777777765431                


Q ss_pred             chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCC
Q 009632          215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDN  292 (530)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~  292 (530)
                      .+.-...|.+++..++.++|++...+.+++.+..++.+.+|.-|.++..+|+.++++.++..  ..+++++..+++++|+
T Consensus       322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp  401 (1075)
T KOG2171|consen  322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP  401 (1075)
T ss_pred             ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence            12256778999999999999998899999999999999999999999999999998876543  3568999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccC-CcHHHHHHHHHHHHhhccccCHHHH---HHhHHH-HHH
Q 009632          293 EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDAT---IEQLLP-IFL  364 (530)
Q Consensus       293 ~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~-~l~  364 (530)
                      +|.||.+|+.+++++...+.++   ...+.+.|.+...+.+ .+.+|...++..+..+.+.+.++.+   .+.++. .+.
T Consensus       402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~  481 (1075)
T KOG2171|consen  402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL  481 (1075)
T ss_pred             CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876   4456777777776665 4679999999999888877776544   444444 444


Q ss_pred             HhhcCCChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHhhhChhhHHH---
Q 009632          365 SLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDD---  435 (530)
Q Consensus       365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~~----~~~~R~~~~~~l~~l~~~~~~~~~~~---  435 (530)
                      .+++.+.+.||+.++.+++.+....+...  +.+.++|.|.+.+++.    ....|...+++++.++..+|++.|.+   
T Consensus       482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~  561 (1075)
T KOG2171|consen  482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE  561 (1075)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence            55677889999999999999998776543  3477888888887654    36788889999999999999887764   


Q ss_pred             HHHHHHHHH---hcCCcHHHHHHHHHHHHHHHHHhChhHHh--hhhHHHHHhh
Q 009632          436 KLGALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEM  483 (530)
Q Consensus       436 ~~~~~l~~~---l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~  483 (530)
                      .++..+..+   -.|.+...|...+..++.+++.+|+++.+  ..++|.+.+.
T Consensus       562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~t  614 (1075)
T KOG2171|consen  562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKT  614 (1075)
T ss_pred             HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHh
Confidence            455555555   44566678999999999999999998654  5566666553

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.94  E-value=2.9e-23  Score=195.98  Aligned_cols=513  Identities=17%  Similarity=0.232  Sum_probs=361.3

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc--ccCCchH-HHHHHHHHHhcccccCC-------
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDE-VLLAMAEELGVFIPYVG-------   79 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~-vr~~~~~~l~~~~~~~~-------   79 (530)
                      .|..++-++|++.+..|..+++.|.+-+..+|.+..++.++|++++  +.|+.-+ +....-+.|..+-..+.       
T Consensus       364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL  443 (1172)
T KOG0213|consen  364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL  443 (1172)
T ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence            3678889999999999999999999999999999999999999988  4444322 12222222322211111       


Q ss_pred             --------Cccchhcchh--HHH----------------hhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH
Q 009632           80 --------GVEHAHVLLP--PLE----------------TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL  133 (530)
Q Consensus        80 --------~~~~~~~l~~--~l~----------------~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l  133 (530)
                              .+++.....+  ++.                .-....++-||+....+++.+++.++-    ..++|+++..
T Consensus       444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi----p~llpfLkav  519 (1172)
T KOG0213|consen  444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAV  519 (1172)
T ss_pred             EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHH
Confidence                    1111111111  111                112346889999999999999998865    4588999999


Q ss_pred             hcCC-ccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHH-
Q 009632          134 AAGE-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMS-  205 (530)
Q Consensus       134 ~~~~-~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~-  205 (530)
                      +++. +|..|..++.+...++..++..   +...++.++.+.+.|.+..||.-++.+++.+++...+   +.+-+.+-| 
T Consensus       520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpL  599 (1172)
T KOG0213|consen  520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPL  599 (1172)
T ss_pred             hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            9998 9999999999888877666654   7788999999999999999999999999999998775   222111111 


Q ss_pred             ----------------------------------------HHHHhhcCCchhHHHHHHHHHHHHhhhcCch--hhhhccH
Q 009632          206 ----------------------------------------IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHIL  243 (530)
Q Consensus       206 ----------------------------------------~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~  243 (530)
                                                              .+..=...++++.++..++.+..++..-|-+  -....++
T Consensus       600 wkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dil  679 (1172)
T KOG0213|consen  600 WKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDIL  679 (1172)
T ss_pred             HHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhh
Confidence                                                    1111123455666666666666666554431  1112233


Q ss_pred             HHHHH---------------------------------------hcCCCCHHHHHHHHHHHHHHHHHhCCccc----ccc
Q 009632          244 PVIVN---------------------------------------FSQDKSWRVRYMVANQLYELCEAVGPEPT----RMD  280 (530)
Q Consensus       244 ~~l~~---------------------------------------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~  280 (530)
                      |.+..                                       -+.|..+.-|.+.+.++..+...+|....    .+.
T Consensus       680 p~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~  759 (1172)
T KOG0213|consen  680 PEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEER  759 (1172)
T ss_pred             HHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence            32211                                       12455566667666666666666554322    123


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc---ccCHHHH
Q 009632          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP---LLGKDAT  355 (530)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~---~~~~~~~  355 (530)
                      ++..++..+.+...++. -.+..++.++..+|.  +.+.+.+...+...++++++.+|..++..++.++.   .++.+..
T Consensus       760 lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~  838 (1172)
T KOG0213|consen  760 LIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL  838 (1172)
T ss_pred             HHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34444444433322221 345566666666665  45566677777778899999999999999888764   5566777


Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHH---hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh
Q 009632          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (530)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~  432 (530)
                      ..++--++...|..+.++|--..+.++..+++.+|-....   +.++|.+..++++.+..+...++..++.++..- +++
T Consensus       839 m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrg-pE~  917 (1172)
T KOG0213|consen  839 MGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRG-PEY  917 (1172)
T ss_pred             HHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcC-ccc
Confidence            7888888999999999999999999999999998765432   578999999999999999999999999998743 222


Q ss_pred             H-HHHHHHH---HHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-------------------------------hhhH
Q 009632          433 F-DDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-------------------------------QHIT  477 (530)
Q Consensus       433 ~-~~~~~~~---l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-------------------------------~~i~  477 (530)
                      . ....+.+   ++.+|+.....+|.+|..++|.|+++.|+..+.                               -.++
T Consensus       918 v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVL  997 (1172)
T KOG0213|consen  918 VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVL  997 (1172)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhh
Confidence            1 2223333   344566778899999999999999999986311                               2478


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHhhccCCCC
Q 009632          478 PQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRYL  528 (530)
Q Consensus       478 ~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~~l~D~~~  528 (530)
                      |.+++-...|+..|+.+.+++++.+.+.+|.  .++.-.+.|.+...+.|+-+
T Consensus       998 PalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~ 1050 (1172)
T KOG0213|consen  998 PALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDL 1050 (1172)
T ss_pred             HHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccH
Confidence            9998888999999999999999999998884  45667789999999998754

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.8e-23  Score=195.04  Aligned_cols=511  Identities=17%  Similarity=0.203  Sum_probs=380.1

Q ss_pred             HHHHHHHhcChhHH-HHHHHhhcHHHHHHhhChHhhhh---cccc-cccc--ccCCchHHHHHHHHHHhcccccCC----
Q 009632           11 IAVLIDELKNDDIQ-LRLNSIRRLSTIARALGEERTRK---ELIP-FLSE--NNDDDDEVLLAMAEELGVFIPYVG----   79 (530)
Q Consensus        11 ~~~l~~~l~~~~~~-~R~~a~~~l~~~~~~~~~~~~~~---~l~~-~l~~--~~d~~~~vr~~~~~~l~~~~~~~~----   79 (530)
                      |..|+.+...+.+. .+..++.++|-++++..|+....   .++. .++.  -..++..||.++-.+|-+-..+.+    
T Consensus       131 i~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~  210 (859)
T KOG1241|consen  131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN  210 (859)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc
Confidence            55677777766666 78999999999999999876533   3333 3333  345677899999999865444333    


Q ss_pred             CccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC--
Q 009632           80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP--  154 (530)
Q Consensus        80 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~--  154 (530)
                      .+..++.++.+.++..+.+|..+|.+|+.||.+|+...-+   ....+.+.++.....+++++.+...+....+.++.  
T Consensus       211 ~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE  290 (859)
T KOG1241|consen  211 NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE  290 (859)
T ss_pred             cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            3345678888889999999999999999999999886432   11223344455555677888888877777764432  


Q ss_pred             -------------CCCh-------HHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Q 009632          155 -------------SAPD-------ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF  207 (530)
Q Consensus       155 -------------~~~~-------~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l  207 (530)
                                   ..++       ...+.++|.+++++.       |.+|.+.++|..+|.-++...+++. .+.++|++
T Consensus       291 iD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fi  369 (859)
T KOG1241|consen  291 IDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFI  369 (859)
T ss_pred             HHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHH
Confidence                         1121       123578888887653       4579999999999999999887765 46899999


Q ss_pred             HHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----cccccc
Q 009632          208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMD  280 (530)
Q Consensus       208 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~  280 (530)
                      .+-+..+++.-|.+|+-+++++...-.+.   .+....+|.+..+..|++-.||.+++++|+.+++.+..    ......
T Consensus       370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~  449 (859)
T KOG1241|consen  370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS  449 (859)
T ss_pred             HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence            99999999999999999999998865542   35677889999999999999999999999999988653    334456


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--------HHHhhhhHhHhHhcc-----C-CcHHHHHHHHHHHHhh
Q 009632          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--------LAIQHILPCVKELSS-----D-SSQHVRSALASVIMGM  346 (530)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--------~~~~~l~~~l~~~~~-----d-~~~~vr~~~~~~l~~l  346 (530)
                      +++.+.+.++|. |.|-.++.+++..+++.+...        ...+.+.+.+..+++     | .+-+.|.++.+++..+
T Consensus       450 ~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl  528 (859)
T KOG1241|consen  450 KLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL  528 (859)
T ss_pred             HHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence            778888888887 889999999998888654211        111222233333332     2 3458999999999999


Q ss_pred             ccccCHHHH--HHhHHHHHH----Hhhc-------C--CChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHHhcC-
Q 009632          347 APLLGKDAT--IEQLLPIFL----SLLK-------D--EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED-  408 (530)
Q Consensus       347 ~~~~~~~~~--~~~l~~~l~----~~l~-------d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~~-  408 (530)
                      .+....+.+  ...+.+++.    +.++       |  ...++....+..|+.+...++++  ...+.++..+.++++. 
T Consensus       529 Ik~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~  608 (859)
T KOG1241|consen  529 IKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESK  608 (859)
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCC
Confidence            887765432  222223222    2232       1  11346666777888888877764  3456788888888877 


Q ss_pred             CChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhh
Q 009632          409 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEM  483 (530)
Q Consensus       409 ~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~  483 (530)
                      .+..+-..+..+++.++..+|..|  +.+.+.|++...| +-.+..|-..|+...|.++++++.++.  .+.++..|.+.
T Consensus       609 ~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~  688 (859)
T KOG1241|consen  609 RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC  688 (859)
T ss_pred             ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            456688899999999999999887  4588999999999 667889999999999999999987754  37788889998


Q ss_pred             ccCC--ChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhc
Q 009632          484 INNP--HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINAS  523 (530)
Q Consensus       484 ~~d~--~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l  523 (530)
                      ++++  +..|+-..+.++|.|+.++|.+  .+++.++|.+.+..
T Consensus       689 Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as  732 (859)
T KOG1241|consen  689 LSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS  732 (859)
T ss_pred             ccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            8887  5678999999999999999975  46888899888765

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.6e-24  Score=198.20  Aligned_cols=459  Identities=16%  Similarity=0.102  Sum_probs=323.5

Q ss_pred             hccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcC---hhhhh
Q 009632           47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMR---ESDLV  123 (530)
Q Consensus        47 ~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~  123 (530)
                      .++...+++..++++++|+.+-..+.++-.+   +++-.++.-+|..+- .++..+|..|.-.|++-++.-.   +....
T Consensus        13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~---pdfnnYL~~IL~~~~-~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~   88 (885)
T KOG2023|consen   13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLF---PDFNNYLIYILIRAK-SEDVPTRSLAGLLLKNNVRGHYNSIPSEVL   88 (885)
T ss_pred             HHHHHHHHhccCCChHHHHHHHHHHHHHhcc---cchhceeeEEEeccc-ccchhHHHHhhhhHhccccccccCCChHHH
Confidence            4556666667889999999999888877442   445555555554444 4456678888877777554321   23455


Q ss_pred             hhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-------
Q 009632          124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------  196 (530)
Q Consensus       124 ~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-------  196 (530)
                      .++-.-+.+.+.|.++-+|......+..++..-+-+.+++++|.+.++++.++....+.|..+|..+++....       
T Consensus        89 ~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~  168 (885)
T KOG2023|consen   89 DYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL  168 (885)
T ss_pred             HHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc
Confidence            6677777777788888889888888888888777788999999999999999999999999999999875443       


Q ss_pred             hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh--hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Q 009632          197 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP  274 (530)
Q Consensus       197 ~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  274 (530)
                      ......++|.+.++.+++++.+|..|+.++..+.-.-+..-  ..+.++..+..+.+|.++.||..+|.++.-+.+.-.+
T Consensus       169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d  248 (885)
T KOG2023|consen  169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD  248 (885)
T ss_pred             cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence            23456789999999999999999999999888765544321  2345666667777888888888888888888776544


Q ss_pred             cc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHh----cc-----CCcHHHHHHHHHHH
Q 009632          275 EP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL----SS-----DSSQHVRSALASVI  343 (530)
Q Consensus       275 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~----~~-----d~~~~vr~~~~~~l  343 (530)
                      ..  ....++.+.++...|.+.+|...|.+-...+++.--...   .+.|++.++    ++     |.+.-..       
T Consensus       249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~---~L~p~l~kliPvLl~~M~Ysd~D~~LL-------  318 (885)
T KOG2023|consen  249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKE---VLQPYLDKLIPVLLSGMVYSDDDIILL-------  318 (885)
T ss_pred             hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHH---HHHHHHHHHHHHHHccCccccccHHHh-------
Confidence            32  345677777777788888888888888888777543333   233333333    11     1110000       


Q ss_pred             HhhccccCHHHHHHhHHHHHHHhh------------------cC----CChHHHHHHHHhhHHhhhhhchhHHHhhHHHH
Q 009632          344 MGMAPLLGKDATIEQLLPIFLSLL------------------KD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (530)
Q Consensus       344 ~~l~~~~~~~~~~~~l~~~l~~~l------------------~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  401 (530)
                      ..-.+.-.-..-.+.+-|-+-+--                  .|    .+|+.|.+.+.++..+...+|.+- .+.++|.
T Consensus       319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~Pl  397 (885)
T KOG2023|consen  319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPL  397 (885)
T ss_pred             cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHH
Confidence            000000000000011111111100                  00    137899999999999999998554 5789999


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh---hhh
Q 009632          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHI  476 (530)
Q Consensus       402 l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~---~~i  476 (530)
                      +.+.+.+..|.+|++++-++|.++..+-..+  ....++|++..++.|+.+-||..+|.+|+......-.+...   ..+
T Consensus       398 Lk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pv  477 (885)
T KOG2023|consen  398 LKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPV  477 (885)
T ss_pred             HHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHH
Confidence            9999999999999999999999999765444  34669999999999999999999999999988776332222   344


Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHH
Q 009632          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVI  520 (530)
Q Consensus       477 ~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~  520 (530)
                      +..+.+.+-|.|.+|+++|+.+++.+.+..|.+  .++++++..+.
T Consensus       478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~  523 (885)
T KOG2023|consen  478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLV  523 (885)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            555556677999999999999999999888765  34555554443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.92  E-value=1.4e-21  Score=181.19  Aligned_cols=506  Identities=15%  Similarity=0.160  Sum_probs=332.2

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc--ccCCchH-HHHHHHHHHhcccccCC--------
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDE-VLLAMAEELGVFIPYVG--------   79 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~-vr~~~~~~l~~~~~~~~--------   79 (530)
                      +-.++-+.|++++..|..+++.|.+-+..+|++.+.+.++|.+++  +.|+.-+ +....-..|..+.....        
T Consensus       170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILv  249 (975)
T COG5181         170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILV  249 (975)
T ss_pred             HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEE
Confidence            567888999999999999999999999999999998888888876  3333321 11112222211111000        


Q ss_pred             -------Cccc------hhcchhH------------HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHh
Q 009632           80 -------GVEH------AHVLLPP------------LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA  134 (530)
Q Consensus        80 -------~~~~------~~~l~~~------------l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~  134 (530)
                             .++.      ...++.+            +..-..+.++-||+....+.+.+++.++-    +.++|++..++
T Consensus       250 Vv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c  325 (975)
T COG5181         250 VVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALC  325 (975)
T ss_pred             EeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHh
Confidence                   0000      0001111            11112345666777666666666666553    23566666666


Q ss_pred             cCC-ccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhH-------
Q 009632          135 AGE-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLK-------  200 (530)
Q Consensus       135 ~~~-~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~-------  200 (530)
                      .+. +|..|..++++...++..++..   +...++..+.+++.|.+..||..++.+++.+++..++   +.+.       
T Consensus       326 ~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw  405 (975)
T COG5181         326 GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLW  405 (975)
T ss_pred             cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            665 6666766666665555444432   5566666666777777666777666666666665442   0000       


Q ss_pred             --------------------------------------------------------------------------------
Q 009632          201 --------------------------------------------------------------------------------  200 (530)
Q Consensus       201 --------------------------------------------------------------------------------  200 (530)
                                                                                                      
T Consensus       406 ~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~p  485 (975)
T COG5181         406 EGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSP  485 (975)
T ss_pred             HHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcH
Confidence                                                                                            


Q ss_pred             ----------------------------------HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----------
Q 009632          201 ----------------------------------TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----------  236 (530)
Q Consensus       201 ----------------------------------~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----------  236 (530)
                                                        +.+...+.+...|+.+..|..++.+...+...+|..          
T Consensus       486 efF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl  565 (975)
T COG5181         486 EFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERL  565 (975)
T ss_pred             HhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHH
Confidence                                              111222222334555556666666655555544421          


Q ss_pred             ----------------------------------hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCccccc
Q 009632          237 ----------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRM  279 (530)
Q Consensus       237 ----------------------------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~  279 (530)
                                                        .+...++..+..+++++.+.||..++...+.++..+   |+.....
T Consensus       566 ~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~  645 (975)
T COG5181         566 YDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELA  645 (975)
T ss_pred             HHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence                                              112223444455677888888888888877776654   4444455


Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH---HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc----cCH
Q 009632          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPL----LGK  352 (530)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~----~~~  352 (530)
                      ++--++.+.+....|+|-...++++..+....+-..+   ...++|.+...+.+++.+|....+..++.++..    .|.
T Consensus       646 klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~  725 (975)
T COG5181         646 KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV  725 (975)
T ss_pred             HHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH
Confidence            6666777788888888888888888877766554311   256677777777888889998888888888754    344


Q ss_pred             HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh
Q 009632          353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (530)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~  432 (530)
                      .+|..... -+...|+.-+.++|..|..+++.+.+.+|+.    .++..|.+-++....+.|.+..-+++.+++.+|+-.
T Consensus       726 rEWMRIcf-eLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfs  800 (975)
T COG5181         726 REWMRICF-ELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFS  800 (975)
T ss_pred             HHHHHHHH-HHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchh
Confidence            55544332 3556677888999999999999999999985    466677777777788899999999999999888643


Q ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH--HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC---
Q 009632          433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---  507 (530)
Q Consensus       433 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~---  507 (530)
                          ++|.++.=-..++.+|....+++++.++++.|+..  +.-.+.|.+...+.|.+...|+.|...+.+++-..+   
T Consensus       801 ----VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg  876 (975)
T COG5181         801 ----VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG  876 (975)
T ss_pred             ----hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc
Confidence                67888877788999999999999999999988642  335688999999999999999999999999976643   


Q ss_pred             hHHHHhhHHHHHHhhccCCCCC
Q 009632          508 SEITCSRLLPVVINASKDRYLN  529 (530)
Q Consensus       508 ~~~~~~~~~p~l~~~l~D~~~~  529 (530)
                      .++..=+++..+-.=.-|+.|.
T Consensus       877 ~eda~IHLlNllwpNIle~sPh  898 (975)
T COG5181         877 DEDAAIHLLNLLWPNILEPSPH  898 (975)
T ss_pred             cHHHHHHHHHHhhhhccCCCcH
Confidence            3444333344433333444443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.91  E-value=2.3e-20  Score=176.68  Aligned_cols=497  Identities=16%  Similarity=0.151  Sum_probs=335.7

Q ss_pred             hcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCC-chHHHHHHHHHHhcccccCCC--ccchhcchhHHHh
Q 009632           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLET   93 (530)
Q Consensus        18 l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~   93 (530)
                      +.+.|+-.|....+..+.++.++|..    .++|+|.. +.+. +-+-|....++...++-+.|.  -.|...++.++..
T Consensus       485 idn~deYVRnttarafavvasalgip----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~  560 (1172)
T KOG0213|consen  485 IDNKDEYVRNTTARAFAVVASALGIP----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH  560 (1172)
T ss_pred             cccccHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence            34667777777777777777777653    56777766 3332 444555555554444444442  2355666777777


Q ss_pred             hhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHH
Q 009632           94 LCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS  166 (530)
Q Consensus        94 l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~  166 (530)
                      .+.|++..||..++-+++.+++...+-.   +...+-|+.+...+... ..-.+....++.+++.+.++    +-.+++-
T Consensus       561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrevml  639 (1172)
T KOG0213|consen  561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREVML  639 (1172)
T ss_pred             hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence            8888888888888888888888776633   33333344332222211 12223344556666655554    2234445


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhH---------------------------------------HHHHH
Q 009632          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLK---------------------------------------TDIMS  205 (530)
Q Consensus       167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~---------------------------------------~~l~~  205 (530)
                      ++..=..+++.+.++..++.+...+..-+-+  ...                                       ..++.
T Consensus       640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~  719 (1172)
T KOG0213|consen  640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS  719 (1172)
T ss_pred             HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH
Confidence            5555556677777777777776666544421  111                                       11233


Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHHhhhcCch--------------------------------------------hhhhc
Q 009632          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--------------------------------------------DCVAH  241 (530)
Q Consensus       206 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------~~~~~  241 (530)
                      ..+.-+.|+.+..|...+++...+...+|..                                            .+.++
T Consensus       720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpq  799 (1172)
T KOG0213|consen  720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQ  799 (1172)
T ss_pred             HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHH
Confidence            3333356777888888888888887776642                                            11122


Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH--
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--  316 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--  316 (530)
                      +...+...++++++.||..++..++.++..+   +++..+.++--.+.+.+....|+|-...+.++..+...+|....  
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p  879 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP  879 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence            2333334567888999999999888877664   44445667777788888889999999999999998888765422  


Q ss_pred             -HhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc----CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 009632          317 -IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  391 (530)
Q Consensus       317 -~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  391 (530)
                       ...++|.+...+++++.+|....+..++.++..-    +..+|.... --++.+|+..+.++|.+|..+++.+.+.+|+
T Consensus       880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc-feLlelLkahkK~iRRaa~nTfG~IakaIGP  958 (1172)
T KOG0213|consen  880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC-FELLELLKAHKKEIRRAAVNTFGYIAKAIGP  958 (1172)
T ss_pred             ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH
Confidence             2566777777788999999999999999987543    334444332 2355667778899999999999999999998


Q ss_pred             hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-
Q 009632          392 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-  470 (530)
Q Consensus       392 ~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-  470 (530)
                      .    .++..|.+-++....+.|.+.--+++.+++.+|+-    .++|.+++--.-++.+|....++++..++++.|+- 
T Consensus       959 q----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen  959 Q----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred             H----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh
Confidence            5    45666766677778888888888888888888864    36888888888899999999999999999998753 


Q ss_pred             -HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc---ChHHHHhhHHHHHHhhccCCCC
Q 009632          471 -WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRYL  528 (530)
Q Consensus       471 -~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~---~~~~~~~~~~p~l~~~l~D~~~  528 (530)
                       .+.-.+.|-+...+.|.+...|+.|..++.+++-..   |.++..-+++.++-.=.-++.|
T Consensus      1031 kdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1031 KDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred             hhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCCh
Confidence             233567899999999999999999999999987653   3455444444333332333443

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.8e-20  Score=175.45  Aligned_cols=476  Identities=15%  Similarity=0.192  Sum_probs=319.2

Q ss_pred             hhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchH-HHHHHHHHHHHHHhhcChhhhh
Q 009632           46 RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMRESDLV  123 (530)
Q Consensus        46 ~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~-vR~~a~~~l~~l~~~~~~~~~~  123 (530)
                      ++.+-..+.. +..+.|.+...|+.+++.++..=-..+.|+.++..+.....++.+. +|+.++++++-+++.+.++...
T Consensus        88 reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~  167 (859)
T KOG1241|consen   88 REQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLE  167 (859)
T ss_pred             HHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHH
Confidence            3444444444 5567888888899998887763223456788888877776666554 9999999999999999997655


Q ss_pred             hhHH----HHHHHHhcC-CccchhHHHHhHhhhhcC----CCC-hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 009632          124 DWYI----PLVKRLAAG-EWFTARVSACGLFHIAYP----SAP-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAAT  193 (530)
Q Consensus       124 ~~l~----~~l~~l~~~-~~~~~r~~~~~~l~~l~~----~~~-~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~  193 (530)
                      ...-    ..+..+.+. ++..+|.+|..++..-.+    .+. +..++.++....+..+.++.+||.+|..+|..+...
T Consensus       168 ~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L  247 (859)
T KOG1241|consen  168 QQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL  247 (859)
T ss_pred             HHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH
Confidence            4422    333333333 377899998888765432    233 336788888888999999999999999999998763


Q ss_pred             hcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh-cC------c--hh------------hhhccHHHHHHh
Q 009632          194 VEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LE------P--QD------------CVAHILPVIVNF  249 (530)
Q Consensus       194 ~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~------~--~~------------~~~~~~~~l~~~  249 (530)
                      .=+   .+..+-++++....+..++++|...+++.|.++++- ..      .  +.            -...++|.+.++
T Consensus       248 yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~  327 (859)
T KOG1241|consen  248 YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLEL  327 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHH
Confidence            211   233445778888888999999999999999987752 11      1  00            123577887776


Q ss_pred             cC-------CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHhh
Q 009632          250 SQ-------DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQH  319 (530)
Q Consensus       250 ~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~  319 (530)
                      +.       |++|..-.++..||.-+++..|++. .++++|++.+.++.++|.-|.+++-+++.+...-.++   .+...
T Consensus       328 L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q  406 (859)
T KOG1241|consen  328 LTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ  406 (859)
T ss_pred             HHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence            52       3579999999999999999999887 4689999999999999999999999999998865554   33456


Q ss_pred             hhHhHhHhccCCcHHHHHHHHHHHHhhccccC----HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hh
Q 009632          320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---ID  392 (530)
Q Consensus       320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~  392 (530)
                      .+|.+..+..|++-.+|..+..+++.++..+.    .......+++.+...|+|. +.|-..++.++..+.+..-   ..
T Consensus       407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s  485 (859)
T KOG1241|consen  407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVS  485 (859)
T ss_pred             hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccC
Confidence            68888888889999999999999999876554    3445666777777777776 5566666677666664321   11


Q ss_pred             H--------HHhhHHHHHHHHhcC---CChHHHHHHHHHHHHHHhhhChhhHH--HHHHHHHHH---------Hhc--C-
Q 009632          393 L--------LSQSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQ---------WLQ--D-  447 (530)
Q Consensus       393 ~--------~~~~l~~~l~~~~~~---~~~~~R~~~~~~l~~l~~~~~~~~~~--~~~~~~l~~---------~l~--d-  447 (530)
                      +        +.+.++..|.+...-   .....|.++.++|+.+.+........  ..+.+.++.         .++  | 
T Consensus       486 ~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr  565 (859)
T KOG1241|consen  486 NGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADR  565 (859)
T ss_pred             CCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhH
Confidence            1        223344444433221   24668888888888887765543321  112222211         111  1 


Q ss_pred             -CcHHHHHHHHHHHHHHHHHhChhH--HhhhhHHHHHhhccC-CChHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHh
Q 009632          448 -KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVIN  521 (530)
Q Consensus       448 -~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~  521 (530)
                       ...++....|.+|+.+.+.++++.  ..+.++..+.++++. .+.-+.+.+..+++.++..+|+.+  +.+.+.|+|..
T Consensus       566 ~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~  645 (859)
T KOG1241|consen  566 AQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLM  645 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence             222455556666666666665432  225566666666555 344556666666666666665432  45556666555


Q ss_pred             hc
Q 009632          522 AS  523 (530)
Q Consensus       522 ~l  523 (530)
                      .+
T Consensus       646 gL  647 (859)
T KOG1241|consen  646 GL  647 (859)
T ss_pred             Hh
Confidence            54

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.89  E-value=3.5e-19  Score=191.80  Aligned_cols=494  Identities=13%  Similarity=0.102  Sum_probs=347.6

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhCh---Hhhhhcccccccc-ccC-CchHHHHHHHHHHhcccccCCCccch
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGE---ERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGVEHA   84 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~~~~~   84 (530)
                      .+..+++.++++++..+..|...+..++.+.+.   .......+|.+.. +.+ +++.+|..++.+|++++..  +.++.
T Consensus       190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~--s~e~r  267 (2102)
T PLN03200        190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ--SKEAK  267 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC--CHHHH
Confidence            567888999999999999999888777654321   1123456777777 443 5668999999999998873  33332


Q ss_pred             h-----cchhHHHhhhccc---------chHHHHHHHHHHHHHHhhcCh-----------h-hhh---h--hHHHHHHHH
Q 009632           85 H-----VLLPPLETLCTVE---------ETCVRDKAVESLCRIGSQMRE-----------S-DLV---D--WYIPLVKRL  133 (530)
Q Consensus        85 ~-----~l~~~l~~l~~d~---------~~~vR~~a~~~l~~l~~~~~~-----------~-~~~---~--~l~~~l~~l  133 (530)
                      .     .-+|.|..++..+         +...++.|+.+|++++....+           . +..   .  ..++.+...
T Consensus       268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l  347 (2102)
T PLN03200        268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV  347 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence            2     2345555555433         245688999999999875422           0 000   0  011112122


Q ss_pred             hcCCccchhH----HHHhHhhhhcCCCChH-HH----------------------HHHHHHHHhhcCCCChhHHHHHHHH
Q 009632          134 AAGEWFTARV----SACGLFHIAYPSAPDI-LK----------------------TELRSIYTQLCQDDMPMVRRSAASN  186 (530)
Q Consensus       134 ~~~~~~~~r~----~~~~~l~~l~~~~~~~-~~----------------------~~l~~~l~~l~~d~~~~vR~~a~~~  186 (530)
                      ..+++...+.    .++..+..+..+-.+. .+                      .+..+.+..++...+.+++..++.+
T Consensus       348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~a  427 (2102)
T PLN03200        348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRA  427 (2102)
T ss_pred             cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHH
Confidence            2222222221    1122333333322111 11                      1233455566666778999999999


Q ss_pred             HHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHH
Q 009632          187 LGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYM  260 (530)
Q Consensus       187 l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~  260 (530)
                      +..++..-..   .......+|.+.+++.+++..+|..|+..++.++..-...   ......+|.+.+++.+++..+|..
T Consensus       428 L~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqee  507 (2102)
T PLN03200        428 LSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKED  507 (2102)
T ss_pred             HHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence            9998864221   1223346899999999999999999999999998643321   123568999999999999999999


Q ss_pred             HHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHH
Q 009632          261 VANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS  337 (530)
Q Consensus       261 ~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~  337 (530)
                      +++++++++..-..   .......+|.+++++++.+++++..++.+|..+......+     .++.+..++...+..++.
T Consensus       508 AawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLlsdd~~~~~  582 (2102)
T PLN03200        508 SATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLGDLPESKV  582 (2102)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcCCChhHHH
Confidence            99999999863110   1113467889999999999999999999999998754333     235566667777788888


Q ss_pred             HHHHHHHhhccccCHHHH------HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hHHHhhHHHHHHHHhcC
Q 009632          338 ALASVIMGMAPLLGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAED  408 (530)
Q Consensus       338 ~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~~  408 (530)
                      .+++.++.+......+..      ....+|.+..+++.++..++..|+.++.+++..-..   ..+....+|.+..++++
T Consensus       583 ~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss  662 (2102)
T PLN03200        583 HVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN  662 (2102)
T ss_pred             HHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence            888888887665443322      235789999999999999999999999999863221   12345778889999999


Q ss_pred             CChHHHHHHHHHHHHHHhhhChhh----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh--HHhhhhHHHHHh
Q 009632          409 RHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLE  482 (530)
Q Consensus       409 ~~~~~R~~~~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~  482 (530)
                      .+..+|..+.++++.+......+.    .....+|.+.+++++++..++..++.+|..++......  ......++.+.+
T Consensus       663 ~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~  742 (2102)
T PLN03200        663 NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTR  742 (2102)
T ss_pred             CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHH
Confidence            999999999999999986443332    22447888999999999999999999999998765322  234678999999


Q ss_pred             hccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632          483 MINNPHYLYRMTILRAISLLAPVMGSEI  510 (530)
Q Consensus       483 ~~~d~~~~vr~~a~~~l~~i~~~~~~~~  510 (530)
                      ++++.+..+|..|++++..++...+.++
T Consensus       743 lLr~G~~~~k~~Aa~AL~~L~~~~~~~~  770 (2102)
T PLN03200        743 VLREGTLEGKRNAARALAQLLKHFPVDD  770 (2102)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence            9999999999999999999998877544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=6.4e-19  Score=165.87  Aligned_cols=503  Identities=17%  Similarity=0.171  Sum_probs=361.4

Q ss_pred             ChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccC-CchHHHHHHHHHHhcccccCCCcc-chhcchhHHHhhhc
Q 009632           20 NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGVE-HAHVLLPPLETLCT   96 (530)
Q Consensus        20 ~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~~~-~~~~l~~~l~~l~~   96 (530)
                      ++.+..|.+-+......-...| .+....+.|..-+ ++. .+.-+|.......|.++.++...+ ....++..+..-+.
T Consensus        28 d~~~~v~~~ml~a~~~~~~~~~-~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~  106 (569)
T KOG1242|consen   28 DRRIDVRGNMLEAGEAAINQHG-DQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELD  106 (569)
T ss_pred             CcchhhHHhHHHHHHHHHHhhh-HHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcC
Confidence            4444455444443333322222 2233456666655 332 366778888878888877665433 23445555555566


Q ss_pred             ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH--HHHHHHHHHHhhcCC
Q 009632           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQD  174 (530)
Q Consensus        97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~l~~d  174 (530)
                      .+...+|.....|+..+....... ....+.+.+.++.......-|..+...+..+....+-+  ....++..+.....|
T Consensus       107 tps~~~q~~~~~~l~~~~~~~~~~-~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~d  185 (569)
T KOG1242|consen  107 TPSKSVQRAVSTCLPPLVVLSKGL-SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIID  185 (569)
T ss_pred             CCcHHHHHHHHHHhhhHHHHhhcc-CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcc
Confidence            778999999999998887765443 23446777777777666677777777777777666544  456677888888888


Q ss_pred             CChh-HHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC
Q 009632          175 DMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ  251 (530)
Q Consensus       175 ~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~  251 (530)
                      ..+. .|+.+..+.......+++  +.+.-.++|.+..-..|....||.+|..+...+...++.... ..++|.+...+.
T Consensus       186 k~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~  264 (569)
T KOG1242|consen  186 KKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLL  264 (569)
T ss_pred             cchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHH
Confidence            7655 455677778888888875  344455666677777899999999999999999999887543 335555555444


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632          252 DKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (530)
Q Consensus       252 d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~  329 (530)
                      +..|+.+..+++.++.++......  .....++|.+.+.+.|++++||+++.+++..++..+.+..+ +.++|.+.+.+.
T Consensus       265 ~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l~  343 (569)
T KOG1242|consen  265 EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDALA  343 (569)
T ss_pred             HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHhc
Confidence            459999999999999888776543  34678999999999999999999999999999999888774 778899999999


Q ss_pred             CCcHHHHHHHHHHHH-hhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-hhH---HHhhHHHHHHH
Q 009632          330 DSSQHVRSALASVIM-GMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDL---LSQSLLPAIVE  404 (530)
Q Consensus       330 d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~---~~~~l~~~l~~  404 (530)
                      |++.++....-.... .+..... ......++|++.+-+.+.+...+..++..+++++.... +.+   +.+.++|.+..
T Consensus       344 dp~~~~~e~~~~L~~ttFV~~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~  422 (569)
T KOG1242|consen  344 DPSCYTPECLDSLGATTFVAEVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE  422 (569)
T ss_pred             CcccchHHHHHhhcceeeeeeec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH
Confidence            988655544322211 1222222 24567899999999999999999999999999998873 332   34678888888


Q ss_pred             HhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhChhHHhhhhHHHHHhh
Q 009632          405 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHITPQVLEM  483 (530)
Q Consensus       405 ~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~-Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~  483 (530)
                      .+.++.+.+|..+..+++.+.+..|...| ....|-+.+.+.+.... =|..+++.++.+...+|.+.. ..++|.+...
T Consensus       423 ~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~-~~~~~~~~a~  500 (569)
T KOG1242|consen  423 NLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV-EDILPEILAN  500 (569)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH-HHHHHHHHHH
Confidence            88899999999999999999999998887 77899998888765443 478888999999988886644 5567766654


Q ss_pred             cc--CCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHhhccCCCCC
Q 009632          484 IN--NPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRYLN  529 (530)
Q Consensus       484 ~~--d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~~l~D~~~~  529 (530)
                      ..  ..++++|....+.+.-+-...+.  +.+...+++.+.+.+.|..+.
T Consensus       501 ~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~  550 (569)
T KOG1242|consen  501 ASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEK  550 (569)
T ss_pred             HhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCc
Confidence            33  34667888888777765544442  345666677777766677664

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.87  E-value=1.7e-18  Score=168.32  Aligned_cols=512  Identities=13%  Similarity=0.154  Sum_probs=351.5

Q ss_pred             HHHHHhcChhHHHHHHHhhcHHHHH----HhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcc
Q 009632           13 VLIDELKNDDIQLRLNSIRRLSTIA----RALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (530)
Q Consensus        13 ~l~~~l~~~~~~~R~~a~~~l~~~~----~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l   87 (530)
                      .|+++|.+.|...|.+|..-|..-.    ..+..+.. ..++..+.+ +.|.++||+..|.+|+|.++..++ +.+...+
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe-~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk-e~~le~~   86 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSE-RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK-EDQLETI   86 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccch-hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch-HHHHHHH
Confidence            7899999999999999988776532    11222222 234444444 789999999999999999998777 4555555


Q ss_pred             hhHHHhhhcccchHHHHHHHHHHHHHHhhcChh-------hhhhhHHHHHHHHh-c-CCccchhHHHHhHhhhhcCCCCh
Q 009632           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRES-------DLVDWYIPLVKRLA-A-GEWFTARVSACGLFHIAYPSAPD  158 (530)
Q Consensus        88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-------~~~~~l~~~l~~l~-~-~~~~~~r~~~~~~l~~l~~~~~~  158 (530)
                      ..-|+.-.-.....-|..+.-+|......++|.       .....+.|.+.... . .+...++..++..++....+.+.
T Consensus        87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~  166 (1233)
T KOG1824|consen   87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT  166 (1233)
T ss_pred             HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence            555555444556677888888888888777751       11222444443333 2 34566899999998887666554


Q ss_pred             ---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc
Q 009632          159 ---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (530)
Q Consensus       159 ---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  235 (530)
                         +....++..++.-+..+-..||+.++.+++.++...+...+..-+-..+..+-...+...-...+++++.++...|.
T Consensus       167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~  246 (1233)
T KOG1824|consen  167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH  246 (1233)
T ss_pred             cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence               34555666666666777788999999999999998887665443333344444444444444568899999988776


Q ss_pred             --hhhhhccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcC------------------
Q 009632          236 --QDCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLR------------------  290 (530)
Q Consensus       236 --~~~~~~~~~~l~~~~---~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~------------------  290 (530)
                        ....+.+.|.+...+   +..+...|+...++++.+....+.+..  ...++..+++.+.                  
T Consensus       247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~  326 (1233)
T KOG1824|consen  247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL  326 (1233)
T ss_pred             hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence              345677899998888   556678999999999999887665542  2233344333321                  


Q ss_pred             ----------------CCcHHHHHHHHHHHHHHHHhhCH--HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC-
Q 009632          291 ----------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-  351 (530)
Q Consensus       291 ----------------d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-  351 (530)
                                      |-+|.||.+|++++..++..-..  ..+.+.+-|.+..-.++++..||.-++..+-.+....+ 
T Consensus       327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~  406 (1233)
T KOG1824|consen  327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP  406 (1233)
T ss_pred             hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence                            11388999999999887653211  14456677777777788888899887777655432211 


Q ss_pred             ---------------HH---HH----HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhc
Q 009632          352 ---------------KD---AT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAE  407 (530)
Q Consensus       352 ---------------~~---~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~  407 (530)
                                     ..   ..    ...++..+...+++.+-..|..++..|..++..+..  ......++|.+...+.
T Consensus       407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~  486 (1233)
T KOG1824|consen  407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN  486 (1233)
T ss_pred             CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC
Confidence                           11   11    234455555556666666788888888888776542  2234678888888888


Q ss_pred             CCC--hHHHHHHHHHHHHHHhhhChhhHHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---------HHh
Q 009632          408 DRH--WRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---------WAM  473 (530)
Q Consensus       408 ~~~--~~~R~~~~~~l~~l~~~~~~~~~~~---~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---------~~~  473 (530)
                      |.+  ...+..++.++..+....+++.|.+   .+.|.+.....|+-+.|-..|+.+.+++++..-+.         ...
T Consensus       487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v  566 (1233)
T KOG1824|consen  487 DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYV  566 (1233)
T ss_pred             CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhH
Confidence            864  5688889999988888888887764   47888888999999999999999999999876321         112


Q ss_pred             hhhHHHHHhh--ccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHhhccCC
Q 009632          474 QHITPQVLEM--INNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDR  526 (530)
Q Consensus       474 ~~i~~~l~~~--~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~~l~D~  526 (530)
                      ..++.+..+.  .+|.+-+||+.|+.++|.++..+|.  ....+..+|.+.+-+..+
T Consensus       567 ~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE  623 (1233)
T KOG1824|consen  567 KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE  623 (1233)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch
Confidence            3344444443  3578999999999999999998882  223566667666655543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.87  E-value=3.7e-19  Score=180.21  Aligned_cols=485  Identities=18%  Similarity=0.168  Sum_probs=351.3

Q ss_pred             hhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccc
Q 009632           21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE   99 (530)
Q Consensus        21 ~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~   99 (530)
                      .+...|..+++.+-.+ ...|. +.. .+.+.+.. +.+++.+.++.+...+..+..  ..++........+..-+++++
T Consensus        18 ~~~~~~~~~l~kli~~-~~~G~-~~~-~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--~~~~~~~l~~n~l~kdl~~~n   92 (526)
T PF01602_consen   18 IDISKKKEALKKLIYL-MMLGY-DIS-FLFMEVIKLISSKDLELKRLGYLYLSLYLH--EDPELLILIINSLQKDLNSPN   92 (526)
T ss_dssp             THHHHHHHHHHHHHHH-HHTT----G-STHHHHHCTCSSSSHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHHHCSSS
T ss_pred             CCHHHHHHHHHHHHHH-HHcCC-CCc-hHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHhhcCCC
Confidence            3777888787766654 33443 232 33444334 567888999988888888766  233444455666767778899


Q ss_pred             hHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhH
Q 009632          100 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMV  179 (530)
Q Consensus       100 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~v  179 (530)
                      +.+|..|+.+++.+.    .....+.+.+.+..+..++++.+|..|+.++..+....++.....+.+.+..++.|+++.|
T Consensus        93 ~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V  168 (526)
T PF01602_consen   93 PYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSV  168 (526)
T ss_dssp             HHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHH
T ss_pred             HHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchh
Confidence            999999999999986    3345566888889999999999999999999888876443322227899999999999999


Q ss_pred             HHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHH
Q 009632          180 RRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRV  257 (530)
Q Consensus       180 R~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v  257 (530)
                      +.+|+.++..+ +.-++.  ...+.++..+.+.+.+.++-.+...++.+..++..-........+++.+...+++.++.|
T Consensus       169 ~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V  247 (526)
T PF01602_consen  169 VSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSV  247 (526)
T ss_dssp             HHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHH
Confidence            99999999998 222222  345666777777778889989988888888766543222111457888888888888889


Q ss_pred             HHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHH
Q 009632          258 RYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS  337 (530)
Q Consensus       258 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~  337 (530)
                      +..++.++..+..   .......+++.+..++.++++++|..++.++..++... +..+. .....+..+..+.+..+|.
T Consensus       248 ~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v~-~~~~~~~~l~~~~d~~Ir~  322 (526)
T PF01602_consen  248 VYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAVF-NQSLILFFLLYDDDPSIRK  322 (526)
T ss_dssp             HHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHHG-THHHHHHHHHCSSSHHHHH
T ss_pred             HHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhhh-hhhhhhheecCCCChhHHH
Confidence            8888887775442   22235678899999999999999999999999998765 22221 2222222334488899999


Q ss_pred             HHHHHHHhhccccCHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHH
Q 009632          338 ALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA  416 (530)
Q Consensus       338 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~  416 (530)
                      .+++.+..++..    .-...+++.+...+.+. +.++|..++..++.++..+...  .+.+++.+.+++...+..++..
T Consensus       323 ~~l~lL~~l~~~----~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~  396 (526)
T PF01602_consen  323 KALDLLYKLANE----SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNE  396 (526)
T ss_dssp             HHHHHHHHH--H----HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCH
T ss_pred             HHHHHHhhcccc----cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccch
Confidence            999999888753    33445777777778554 7889999999999999887543  2567788888888887888888


Q ss_pred             HHHHHHHHHhhhChhhHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHH
Q 009632          417 IIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI  495 (530)
Q Consensus       417 ~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a  495 (530)
                      ++..+..+.......  ....+..+...+.+ ..+.++..++.++|+.............++..+.+.+.+.+..+|..+
T Consensus       397 ~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~i  474 (526)
T PF01602_consen  397 IINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQI  474 (526)
T ss_dssp             HHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHH
Confidence            888888887653322  34456666776665 667899999999999988876511345677788888888889999999


Q ss_pred             HHHHHHHhhhcChHHHHhhHHHHHHhhcc--CCCC
Q 009632          496 LRAISLLAPVMGSEITCSRLLPVVINASK--DRYL  528 (530)
Q Consensus       496 ~~~l~~i~~~~~~~~~~~~~~p~l~~~l~--D~~~  528 (530)
                      +.++.++....+.....+.+...+..+..  +..+
T Consensus       475 lt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~  509 (526)
T PF01602_consen  475 LTALAKLFKRNPENEVQNEILQFLLSLATEDSSDP  509 (526)
T ss_dssp             HHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSH
T ss_pred             HHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCH
Confidence            99999999887765556788888888877  5444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=3.1e-18  Score=161.31  Aligned_cols=457  Identities=16%  Similarity=0.139  Sum_probs=343.8

Q ss_pred             cccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcc-cchHHHHHHHHHHHHHHhhcChhhhhhh-H
Q 009632           50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDW-Y  126 (530)
Q Consensus        50 ~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~-l  126 (530)
                      ++++.. -.|..+.+|.....+.......- +.+....+.|.+.+.++. .++.+|+.-+--.+.++..+...+...+ +
T Consensus        19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~-~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~   97 (569)
T KOG1242|consen   19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQH-GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI   97 (569)
T ss_pred             ceeecccCCCcchhhHHhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence            455544 55667778877777765444432 356677888888877654 4888999988888888887765443322 4


Q ss_pred             HHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhH-HHHHH
Q 009632          127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMS  205 (530)
Q Consensus       127 ~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~l~~  205 (530)
                      +..+..-...++..+|.+...++..+...........+.+.+.++++..+..-|..+...+..+....+-+.+. ..++.
T Consensus        98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~  177 (569)
T KOG1242|consen   98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLD  177 (569)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHH
Confidence            45555555667788999888888877666555556677777888888778888899988888888766654443 35788


Q ss_pred             HHHHhhcCCchh-HHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchH
Q 009632          206 IFEDLTQDDQDS-VRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV  282 (530)
Q Consensus       206 ~l~~~~~d~~~~-vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  282 (530)
                      .+.+.+.|.+.. .|+.+.-+.......+|+  +.+.-.++|.+.....|....||.++..+...+...+.... ...++
T Consensus       178 ~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-VK~ll  256 (569)
T KOG1242|consen  178 NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-VKLLL  256 (569)
T ss_pred             HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-hhHhh
Confidence            888888888654 555677777777788875  44555566666777789999999999999998888876554 35567


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHH
Q 009632          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  360 (530)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  360 (530)
                      |.++..+.+..|.-+.++++.++.+....+..  ...+.++|.+.+.+.|..+.+|.++.+++..++....... ...+.
T Consensus       257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~i  335 (569)
T KOG1242|consen  257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKII  335 (569)
T ss_pred             hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHH
Confidence            77777666668999999999999776654433  4568899999999999999999999999999988776544 67788


Q ss_pred             HHHHHhhcCCChHHHHHHHHhhHH-hhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh-Chh---hHHH
Q 009632          361 PIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG---FFDD  435 (530)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~-~~~---~~~~  435 (530)
                      |.+..++.|+...+..+.-..... ++..+.+. ...-++|.+.+-+.+.+...+..++..+++++... ++.   .|..
T Consensus       336 p~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~p-sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~  414 (569)
T KOG1242|consen  336 PTLLDALADPSCYTPECLDSLGATTFVAEVDAP-SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP  414 (569)
T ss_pred             HHHHHHhcCcccchHHHHHhhcceeeeeeecch-hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence            999999999986665544332221 22222222 23568888888888889999999999999999988 332   3567


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHhhhcChHHH
Q 009632          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEIT  511 (530)
Q Consensus       436 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~~~~~~~~~  511 (530)
                      .++|.+.+.+.|+.++||..+.++++.+.+..|.... ...+|.+.....+. ...-|..+.+.++.++...+-+.+
T Consensus       415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~  490 (569)
T KOG1242|consen  415 SLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV  490 (569)
T ss_pred             HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH
Confidence            7899999999999999999999999999999997755 78899999988765 445588999999999888775543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.87  E-value=4e-18  Score=183.79  Aligned_cols=515  Identities=12%  Similarity=0.115  Sum_probs=352.7

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHh------hhhcccccccc-ccCC---chHHHHHHHHHHhcccccCC
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER------TRKELIPFLSE-NNDD---DDEVLLAMAEELGVFIPYVG   79 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~------~~~~l~~~l~~-~~d~---~~~vr~~~~~~l~~~~~~~~   79 (530)
                      .+..|++-|++.++..|..|...|..++..-..+.      .....+|.|.. +.+.   +..++..++.+|.++...-+
T Consensus       100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e  179 (2102)
T PLN03200        100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD  179 (2102)
T ss_pred             ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc
Confidence            46678888899999999999999999876421011      12445666655 3333   33466667778888876433


Q ss_pred             Cc--c-chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcC-CccchhHHHHhHhhhh
Q 009632           80 GV--E-HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIA  152 (530)
Q Consensus        80 ~~--~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~-~~~~~r~~~~~~l~~l  152 (530)
                      +.  . .....+|.+..+++++++.++..|+.++..++...++   .......+|.+..++.+ ++..+|..|+.++..+
T Consensus       180 n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nL  259 (2102)
T PLN03200        180 GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL  259 (2102)
T ss_pred             chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence            21  0 1234778888888889999999999999888766442   22334467778788865 4568899999999888


Q ss_pred             cCCCChH----HHHHHHHHHHhhcCCCC---------hhHHHHHHHHHHHHHhhhcc-----------h-h-h-------
Q 009632          153 YPSAPDI----LKTELRSIYTQLCQDDM---------PMVRRSAASNLGKFAATVEP-----------A-H-L-------  199 (530)
Q Consensus       153 ~~~~~~~----~~~~l~~~l~~l~~d~~---------~~vR~~a~~~l~~l~~~~~~-----------~-~-~-------  199 (530)
                      +....+.    .....+|.|.+++..++         ...++.+..+|++++....+           . . .       
T Consensus       260 As~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~g  339 (2102)
T PLN03200        260 SSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLG  339 (2102)
T ss_pred             hcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHh
Confidence            8753322    12334566666665444         33478888888887763111           0 0 0       


Q ss_pred             -H-------------------HHHHHHHHHhhcCCc------------------------------------------hh
Q 009632          200 -K-------------------TDIMSIFEDLTQDDQ------------------------------------------DS  217 (530)
Q Consensus       200 -~-------------------~~l~~~l~~~~~d~~------------------------------------------~~  217 (530)
                       .                   ..+.+.+.+++.+.+                                          .+
T Consensus       340 ALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~e  419 (2102)
T PLN03200        340 ALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATAD  419 (2102)
T ss_pred             hHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHH
Confidence             0                   001233444444333                                          33


Q ss_pred             HHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCC
Q 009632          218 VRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRD  291 (530)
Q Consensus       218 vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d  291 (530)
                      ++..++.++.+++..-..   .......+|.+.+++.+.+..++..++..++.++.....   .......+|.+.+++..
T Consensus       420 vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s  499 (2102)
T PLN03200        420 VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET  499 (2102)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence            444444444444432111   011233788888888888889999999999888753211   11234678999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHhhCH-HH-H-HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc
Q 009632          292 NEAEVRIAAAGKVTKFCRILNP-EL-A-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  368 (530)
Q Consensus       292 ~~~~vr~~a~~~l~~~~~~~~~-~~-~-~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  368 (530)
                      +++.+|+.|+.++..++..-.. .. + ....+|.+.+++++.+++++..++.++..+...-..+     .++.+..++.
T Consensus       500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLl  574 (2102)
T PLN03200        500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLL  574 (2102)
T ss_pred             CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhc
Confidence            9999999999999999863211 11 2 2356788888888889999999999998886543322     2255667777


Q ss_pred             CCChHHHHHHHHhhHHhhhhhchhHH------HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh---hhHHHHHHH
Q 009632          369 DEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGA  439 (530)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~~~~  439 (530)
                      .+++.++..++..++.+......+..      ...-+|.+.+++++++..++..|+.++..++..-..   .......+|
T Consensus       575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp  654 (2102)
T PLN03200        575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIIN  654 (2102)
T ss_pred             CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence            77888999999988888664443321      135789999999999999999999999999863221   123345788


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHhChh----HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh--HHHHh
Q 009632          440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCS  513 (530)
Q Consensus       440 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~  513 (530)
                      .+..++.+....++..++.+|+.+.......    ......+|.|.+++++++.+++..++.++.+++..-..  +....
T Consensus       655 PLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~  734 (2102)
T PLN03200        655 PCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAE  734 (2102)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhc
Confidence            9999999999999999999999999743322    12356899999999999999999999999999886542  33456


Q ss_pred             hHHHHHHhhccCCCCC
Q 009632          514 RLLPVVINASKDRYLN  529 (530)
Q Consensus       514 ~~~p~l~~~l~D~~~~  529 (530)
                      ..+|.|.+++....+.
T Consensus       735 ~~I~~Lv~lLr~G~~~  750 (2102)
T PLN03200        735 DIILPLTRVLREGTLE  750 (2102)
T ss_pred             CcHHHHHHHHHhCChH
Confidence            6688888888776653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.87  E-value=2.7e-19  Score=181.21  Aligned_cols=472  Identities=19%  Similarity=0.144  Sum_probs=350.0

Q ss_pred             CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcc
Q 009632            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (530)
Q Consensus         9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l   87 (530)
                      +-+...++.+.++|...|..+.-.+..+... .++ ..-..++.+.. +.++++.+|..|-.+++++.    .++..+.+
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l  115 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE-DPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPL  115 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT-SHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-chh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHH
Confidence            4567778888899999998888777766432 222 22334555555 88999999999999999875    47788889


Q ss_pred             hhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh---HHHHHH
Q 009632           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTEL  164 (530)
Q Consensus        88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~l  164 (530)
                      .+.+..++.|+++.||+.|+.++.++.+..++..... +.+.+..++.|+++.++..|+.++..+ +.-++   ...+.+
T Consensus       116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~  193 (526)
T PF01602_consen  116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKL  193 (526)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHH
Confidence            9999999999999999999999999998854432223 788888888988999999999999888 22222   235566


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  244 (530)
                      .+.+..++.+.+|..+..+++.+..++..-........+++.+..++.+.++.|.-.++.++..+...   ......+.+
T Consensus       194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~  270 (526)
T PF01602_consen  194 IRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAIN  270 (526)
T ss_dssp             HHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHH
T ss_pred             HHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHH
Confidence            66667777899999999988888876543222221146888888888888888998888888765542   235667888


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhH
Q 009632          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV  324 (530)
Q Consensus       245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l  324 (530)
                      .+..++.++++.+|..++.++..++....+...  .....+..+..++++.+|..++..+..++..-..    ..+++.+
T Consensus       271 ~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~----~~Il~eL  344 (526)
T PF01602_consen  271 PLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV----KEILDEL  344 (526)
T ss_dssp             HHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH----HHHHHHH
T ss_pred             HHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccch----hhHHHHH
Confidence            899999999999999999999988765421111  2223333444588899999999999888864433    3445555


Q ss_pred             hHhccC-CcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632          325 KELSSD-SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (530)
Q Consensus       325 ~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  403 (530)
                      .+.+.+ .+..+|..++..++.++.....  .....++.+.+++......+...++..+..+.....  .....++..+.
T Consensus       345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~--~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~--~~~~~~l~~L~  420 (526)
T PF01602_consen  345 LKYLSELSDPDFRRELIKAIGDLAEKFPP--DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP--ELREKILKKLI  420 (526)
T ss_dssp             HHHHHHC--HHHHHHHHHHHHHHHHHHGS--SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST--TTHHHHHHHHH
T ss_pred             HHHHHhccchhhhhhHHHHHHHHHhccCc--hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh--hhhHHHHHHHH
Confidence            555533 3677999999999999876642  234566888888888888888888888888775532  22345677777


Q ss_pred             HHhcC-CChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHH
Q 009632          404 ELAED-RHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  481 (530)
Q Consensus       404 ~~~~~-~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~  481 (530)
                      +.+.+ .+...+..+++.+|..+..... + ....++..+.+...+....||..++.++..+....+.....+.+...+.
T Consensus       421 ~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~  499 (526)
T PF01602_consen  421 ELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLL  499 (526)
T ss_dssp             HHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHH
Confidence            77666 5678999999999999888775 3 5566778888888888899999999999999988765434457888888


Q ss_pred             hhcc--CCChHHHHHHHHHHHHH
Q 009632          482 EMIN--NPHYLYRMTILRAISLL  502 (530)
Q Consensus       482 ~~~~--d~~~~vr~~a~~~l~~i  502 (530)
                      +..+  +.+.+||+.|.+.+.-+
T Consensus       500 ~~~~~~s~~~evr~Ra~~y~~ll  522 (526)
T PF01602_consen  500 SLATEDSSDPEVRDRAREYLRLL  522 (526)
T ss_dssp             CHHHHS-SSHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHH
Confidence            8888  88999999999877644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.86  E-value=5.6e-17  Score=149.86  Aligned_cols=495  Identities=14%  Similarity=0.099  Sum_probs=337.3

Q ss_pred             HHHHhhcHHHHHHhhChHhhhh----cccccccc--ccCCchHHHHHHHHHHhc---ccc-cCCCccchhcchhHHHhhh
Q 009632           26 RLNSIRRLSTIARALGEERTRK----ELIPFLSE--NNDDDDEVLLAMAEELGV---FIP-YVGGVEHAHVLLPPLETLC   95 (530)
Q Consensus        26 R~~a~~~l~~~~~~~~~~~~~~----~l~~~l~~--~~d~~~~vr~~~~~~l~~---~~~-~~~~~~~~~~l~~~l~~l~   95 (530)
                      ...++..++-..+...|+....    -+......  -+..+..+|.++-.+|-+   +++ ....+...+.++...++..
T Consensus       151 k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat  230 (858)
T COG5215         151 KCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT  230 (858)
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc
Confidence            4444555555555544533321    12222222  234567889888888854   222 1122445677888888888


Q ss_pred             cccchHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCC----------CC---hH
Q 009632           96 TVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS----------AP---DI  159 (530)
Q Consensus        96 ~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~----------~~---~~  159 (530)
                      +.++.++..+|..|+.+|+...-+   ...++.+..+..+..+++++.+...+....+.+++.          ++   .+
T Consensus       231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~q  310 (858)
T COG5215         231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQ  310 (858)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchh
Confidence            999999999999999999875322   233445566666777888888888887777554431          11   11


Q ss_pred             -------HHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHH
Q 009632          160 -------LKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG  225 (530)
Q Consensus       160 -------~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~  225 (530)
                             ...+++|.++.++.       +.+|.+-.+|..+|.-+++..++....+ ++.+..+-+..+++.-|.+|+-+
T Consensus       311 n~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmA  389 (858)
T COG5215         311 NHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMA  389 (858)
T ss_pred             hcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHH
Confidence                   24668888888764       4589999999999999999887755444 77788888999999999999999


Q ss_pred             HHHHhhhcCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----cccccchHHHHHHhcCCCcHHHHH
Q 009632          226 CAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRI  298 (530)
Q Consensus       226 l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~  298 (530)
                      ++++...-.+   ..+.++.+|.+.....|+.-.|+...+++++.++..+..    +......+...+..+.|. |.+-.
T Consensus       390 fGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~  468 (858)
T COG5215         390 FGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSI  468 (858)
T ss_pred             hhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHh
Confidence            9999875433   245777899999999999988999999999999987543    322233344444555555 55666


Q ss_pred             HHHHHHHHHHHhhCHH---------HHHhhhhHhHhHh--ccCCcHHHHHHHHHHHHhhccccCHH------HHHHhHHH
Q 009632          299 AAAGKVTKFCRILNPE---------LAIQHILPCVKEL--SSDSSQHVRSALASVIMGMAPLLGKD------ATIEQLLP  361 (530)
Q Consensus       299 ~a~~~l~~~~~~~~~~---------~~~~~l~~~l~~~--~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~  361 (530)
                      ++.+....+...+.+.         .+...++..+.+.  ..+.+...|.+..++++.+...+...      .+......
T Consensus       469 ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~  548 (858)
T COG5215         469 NCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSK  548 (858)
T ss_pred             hhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            6666666666555432         1122222222221  12455678888999998887665432      12222222


Q ss_pred             HHHHhhc---------CC--ChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhh
Q 009632          362 IFLSLLK---------DE--FPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQ  427 (530)
Q Consensus       362 ~l~~~l~---------d~--~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~~-~~~R~~~~~~l~~l~~~  427 (530)
                      -+-.+++         |.  ..++....+..+..++...++  +...+.++..+.+.+++.+ ..+-.....+++.++..
T Consensus       549 kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s  628 (858)
T COG5215         549 KLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTS  628 (858)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH
Confidence            2222221         11  235666666777777777666  4555678888888877763 44556677788888888


Q ss_pred             hChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCC--ChHHHHHHHHHHHH
Q 009632          428 LGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISL  501 (530)
Q Consensus       428 ~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~  501 (530)
                      ++..|  +.+.++|++.+.++..+..|-..|+..+|.++..+|.++.  .+.++..|.++++.+  +.+++-..+..+|.
T Consensus       629 l~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgD  708 (858)
T COG5215         629 LEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGD  708 (858)
T ss_pred             HHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHH
Confidence            87765  5688999999999999999999999999999999987754  366788888888776  66789999999999


Q ss_pred             HhhhcChHH--HHhhHHHHHHhh
Q 009632          502 LAPVMGSEI--TCSRLLPVVINA  522 (530)
Q Consensus       502 i~~~~~~~~--~~~~~~p~l~~~  522 (530)
                      ++.++|..+  +++-++-.+.+.
T Consensus       709 IAlaiga~F~~YL~~im~L~qqa  731 (858)
T COG5215         709 IALAIGANFESYLDMIMMLFQQA  731 (858)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHH
Confidence            999998653  456566555553

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.86  E-value=3.1e-18  Score=157.84  Aligned_cols=426  Identities=15%  Similarity=0.103  Sum_probs=316.3

Q ss_pred             HhhhcccchHHHHHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh---HHHHHH
Q 009632           92 ETLCTVEETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTEL  164 (530)
Q Consensus        92 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~l  164 (530)
                      ...++|+-.+-|++|+--+.++++.+...    .+.+.+..+.......++...|..+...++..+-.++.   .+.+.+
T Consensus         6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i   85 (675)
T KOG0212|consen    6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI   85 (675)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence            34457788888888888888888866432    23333333555666666555555433333333222332   278999


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----hh
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DC  238 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~  238 (530)
                      ++.++.+++|++..||..||+++.++++....+  .+.+.++..+.++..|.+..||.. .+.+..+.+-...+    -.
T Consensus        86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFs  164 (675)
T KOG0212|consen   86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFS  164 (675)
T ss_pred             hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccC
Confidence            999999999999999999999999999988774  456789999999999999999874 55666666554322    12


Q ss_pred             hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH-
Q 009632          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-  315 (530)
Q Consensus       239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-  315 (530)
                      .+.++|.+.+-+.+.++.+|......+..+-..-+-+.  +...+++.+.+++.|++++||.-+-.+++.+...+..+. 
T Consensus       165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~  244 (675)
T KOG0212|consen  165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS  244 (675)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence            56689999999999999999999999887765433222  356789999999999999999999999998888764331 


Q ss_pred             --HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHH--HHHhHHHHHHHhhcCCCh-HHHHHHHHhhHHhhhhhc
Q 009632          316 --AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG  390 (530)
Q Consensus       316 --~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~  390 (530)
                        -.+.+.+.+..-+..+++.++..++.++..+.+..|.+.  +...++..++.++.|... .++..+...-+.+...++
T Consensus       245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s  324 (675)
T KOG0212|consen  245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS  324 (675)
T ss_pred             ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence              124566777777788999999999999999998888654  355667777788888776 577777666655665555


Q ss_pred             hhHH-----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632          391 IDLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (530)
Q Consensus       391 ~~~~-----~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  463 (530)
                      .+..     ...++..+.+.+++.....|.+++.|+..+-...+.+.+  .+.+++.+++-+.|+...|-..++..++.+
T Consensus       325 ~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i  404 (675)
T KOG0212|consen  325 SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI  404 (675)
T ss_pred             hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence            4322     247888999999999999999999999999988877664  467999999999999999999999999999


Q ss_pred             HHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHH
Q 009632          464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  519 (530)
Q Consensus       464 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l  519 (530)
                      +......-. ..++..+.+++.....-++..+.-.+.+++..+.++.+...+-.++
T Consensus       405 ~~s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL  459 (675)
T KOG0212|consen  405 CSSSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL  459 (675)
T ss_pred             hcCcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence            987543211 3455666667766666677777777777777777665544443333

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.85  E-value=2.2e-19  Score=189.24  Aligned_cols=275  Identities=21%  Similarity=0.186  Sum_probs=219.2

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccH
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  243 (530)
                      -++.|...++|+++.||+.|+..|+.+..        +..++.|.+.+.|+++.||..|+.+|..+....+.       .
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence            44677788899999999999999998742        45778888999999999999999999888654432       2


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHh
Q 009632          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (530)
Q Consensus       244 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~  323 (530)
                      +.+...++++++.||..++..|+.+..        .. ...+...+.|+++.||..|+.+|+.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--------~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRA--------GD-AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcc--------CC-HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            456677888999999999999988641        11 2456788999999999999999997621           133


Q ss_pred             HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (530)
Q Consensus       324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  403 (530)
                      +...+.|+++.||..++..++.+...-.      ...+.+..+++|+++.||..|+.+|+.+...       +.+.+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence            4567899999999999999998864321      1256788999999999999999999887432       23445577


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhh
Q 009632          404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM  483 (530)
Q Consensus       404 ~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~  483 (530)
                      ..++|++|.+|..|+.+|+.+..        +.-++.+..+++|+++.||..|+.+|+.+.   +    .....+.|...
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a  878 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA  878 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence            77899999999999999987641        234588889999999999999999999851   1    23467788889


Q ss_pred             ccCCChHHHHHHHHHHHH
Q 009632          484 INNPHYLYRMTILRAISL  501 (530)
Q Consensus       484 ~~d~~~~vr~~a~~~l~~  501 (530)
                      ++|++..||..|.++|..
T Consensus       879 l~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        879 LTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhCCCHHHHHHHHHHHhh
Confidence            999999999999999864

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.85  E-value=2.9e-17  Score=159.90  Aligned_cols=506  Identities=17%  Similarity=0.171  Sum_probs=353.7

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc--ccCCchHHHHHHHHHHhcccccCCC--ccchhc
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHV   86 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~   86 (530)
                      +..++..+.++-...|+.|+.+|+.++... +.....+++..+..  .+...+..-+...++++.+....|.  ..+...
T Consensus       176 l~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~  254 (1233)
T KOG1824|consen  176 LKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDK  254 (1233)
T ss_pred             HHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccch
Confidence            567888999999999999999999998765 45566677766655  3445666667778888877766554  246778


Q ss_pred             chhHHHhhh---cccchHHHHHHHHHHHHHHhhcChhhh--hhhHHHHH-HHHhcCCccchhHHHHhHhhhhcCCCChHH
Q 009632           87 LLPPLETLC---TVEETCVRDKAVESLCRIGSQMRESDL--VDWYIPLV-KRLAAGEWFTARVSACGLFHIAYPSAPDIL  160 (530)
Q Consensus        87 l~~~l~~l~---~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l-~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~  160 (530)
                      +.|++...+   +.++++.|+.++++++.+....+.+..  ++.+..++ ..+..|++...-.. -.-.........++.
T Consensus       255 ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~-eDed~~~~ed~eDde  333 (1233)
T KOG1824|consen  255 IVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE-EDEDAMFLEDEEDDE  333 (1233)
T ss_pred             hhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc-cchhhhhhhccccch
Confidence            899998888   778999999999999999998877532  33344333 44445665322110 000000111111110


Q ss_pred             HHHHHHHHHhhc--CCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch
Q 009632          161 KTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ  236 (530)
Q Consensus       161 ~~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (530)
                      ..      -+..  +|-+|.||++|++++..++..-..  +.+.+.+-|.++..+++.++.|+...+.+...+..+.++-
T Consensus       334 ~~------deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~  407 (1233)
T KOG1824|consen  334 QD------DEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPV  407 (1233)
T ss_pred             hc------cccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC
Confidence            00      0122  245899999999999998875444  4556677788888899999999999888888887766430


Q ss_pred             -----------------------hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCC
Q 009632          237 -----------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRD  291 (530)
Q Consensus       237 -----------------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d  291 (530)
                                             .....++..+...+++++-..|..+...+..+...++..  .....++|.+...+.|
T Consensus       408 ~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~D  487 (1233)
T KOG1824|consen  408 IEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLND  487 (1233)
T ss_pred             cccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCC
Confidence                                   012235555555666666667888888888777766543  2356789999999988


Q ss_pred             Cc--HHHHHHHHHHHHHHHHhhCHHHH---HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc---------cCHHHHHH
Q 009632          292 NE--AEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPL---------LGKDATIE  357 (530)
Q Consensus       292 ~~--~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---------~~~~~~~~  357 (530)
                      .+  ...+..++..+.......+++.+   .+.+.|.+...+.|+.+++-..++.....+++.         ++...+..
T Consensus       488 kSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~  567 (1233)
T KOG1824|consen  488 KSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVK  567 (1233)
T ss_pred             ccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHH
Confidence            65  56777788877777777777644   355666677778899998888777766666542         33345566


Q ss_pred             hHHHHHHHhhc--CCChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---Ch
Q 009632          358 QLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV  430 (530)
Q Consensus       358 ~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~  430 (530)
                      .+....++.|.  |.+.+||+.|+.+++.++..+|...  ..+..+|.+.+.+++  .-.|..|+.++..++...   +.
T Consensus       568 ~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l  645 (1233)
T KOG1824|consen  568 TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDL  645 (1233)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeeh
Confidence            66666666664  7789999999999999999998321  124566666666554  558999999999887642   23


Q ss_pred             hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632          431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       431 ~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      .....+++|.+...+.-.....|.....++..+.+.++....   .+.++..+..+..+.+.++-+.|+.++..+....+
T Consensus       646 ~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p  725 (1233)
T KOG1824|consen  646 SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP  725 (1233)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence            345577888888888877888999999999999988754422   25566667777889999999999999998877655


Q ss_pred             hH--HHHhhHHHHHHhhccCC
Q 009632          508 SE--ITCSRLLPVVINASKDR  526 (530)
Q Consensus       508 ~~--~~~~~~~p~l~~~l~D~  526 (530)
                      ..  ...+.+++.+..++.-|
T Consensus       726 s~l~~~~~~iL~~ii~ll~Sp  746 (1233)
T KOG1824|consen  726 SSLLKISNPILDEIIRLLRSP  746 (1233)
T ss_pred             HHHHHHhhhhHHHHHHHhhCc
Confidence            32  34566777777666554

>PRK09687 putative lyase; Provisional

Probab=99.82  E-value=2.2e-18  Score=155.26  Aligned_cols=250  Identities=19%  Similarity=0.203  Sum_probs=120.0

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHH
Q 009632          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI  246 (530)
Q Consensus       167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  246 (530)
                      .+...+.|++..||..++.+|+.+..        +.+++.+..++.|+++.+|..|+.+|+.+...-..   ....+|.+
T Consensus        27 ~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L   95 (280)
T PRK09687         27 ELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNIL   95 (280)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHH
Confidence            33444455666666666655554432        33445555555555556666666555554431100   11233444


Q ss_pred             HHh-cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHh
Q 009632          247 VNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK  325 (530)
Q Consensus       247 ~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~  325 (530)
                      ..+ .+|+++.||..++.+||.+                                       +....  ......++.+.
T Consensus        96 ~~l~~~D~d~~VR~~A~~aLG~~---------------------------------------~~~~~--~~~~~a~~~l~  134 (280)
T PRK09687         96 NNLALEDKSACVRASAINATGHR---------------------------------------CKKNP--LYSPKIVEQSQ  134 (280)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhcc---------------------------------------ccccc--ccchHHHHHHH
Confidence            433 3444455555555544444                                       22100  00112223333


Q ss_pred             HhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHH
Q 009632          326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  405 (530)
Q Consensus       326 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  405 (530)
                      ....|++|+||..++..++.+..        +..++.+..+++|+++.||..|+.+|+.+..  +    .+...+.|...
T Consensus       135 ~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~  200 (280)
T PRK09687        135 ITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAM  200 (280)
T ss_pred             HHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHH
Confidence            33445555555555555543321        1234555555555555555555555555411  0    12344555555


Q ss_pred             hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhcc
Q 009632          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN  485 (530)
Q Consensus       406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~  485 (530)
                      +.|+++.+|..|+.+++.+.        ....+|.+.+.+.|+.  +|..++.++|.+..        ...+|.|.++++
T Consensus       201 L~D~~~~VR~~A~~aLg~~~--------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~  262 (280)
T PRK09687        201 LQDKNEEIRIEAIIGLALRK--------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLY  262 (280)
T ss_pred             hcCCChHHHHHHHHHHHccC--------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHh
Confidence            55556666666655555532        1234555555555544  45556666666553        135555555554


Q ss_pred             -CCChHHHHHHHHHHH
Q 009632          486 -NPHYLYRMTILRAIS  500 (530)
Q Consensus       486 -d~~~~vr~~a~~~l~  500 (530)
                       ++|..++..+.+++.
T Consensus       263 ~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        263 KFDDNEIITKAIDKLK  278 (280)
T ss_pred             hCCChhHHHHHHHHHh
Confidence             555566666655554

>PRK09687 putative lyase; Provisional

Probab=99.82  E-value=2.9e-18  Score=154.50  Aligned_cols=241  Identities=15%  Similarity=0.078  Sum_probs=186.2

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhh
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  321 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~  321 (530)
                      -.+.+...+.|.+..||..++..|+.+.        ....++.+.++++|+++.+|..++.+|+.+...-..   ....+
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~   92 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVF   92 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHH
Confidence            4455666778888888888888887664        245677788888888889999999999887542111   23456


Q ss_pred             HhHhHh-ccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHH
Q 009632          322 PCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  400 (530)
Q Consensus       322 ~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  400 (530)
                      |.+..+ .+|+++.||..++..++.++...  ......+++.+...+.|+++.||..++.+|+.+..        +..++
T Consensus        93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~  162 (280)
T PRK09687         93 NILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIP  162 (280)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHH
Confidence            667655 68999999999999999985422  11234566677788999999999999999987532        45778


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHH
Q 009632          401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  480 (530)
Q Consensus       401 ~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l  480 (530)
                      .|...++|++|.+|..++.+|+.+.  .+    .+...+.+...+.|+++.||..|+..||.+.        ....+|.|
T Consensus       163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~L  228 (280)
T PRK09687        163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSVL  228 (280)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHHH
Confidence            8889999999999999999999882  11    2346788999999999999999999998852        24689999


Q ss_pred             HhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhcc-CCC
Q 009632          481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRY  527 (530)
Q Consensus       481 ~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~-D~~  527 (530)
                      .+.+++++  +|..++.++|.+..        +..+|.|..+++ ++.
T Consensus       229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d  266 (280)
T PRK09687        229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDD  266 (280)
T ss_pred             HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCC
Confidence            99999877  67789999999997        356777777775 443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.79  E-value=2.5e-17  Score=173.81  Aligned_cols=274  Identities=20%  Similarity=0.165  Sum_probs=210.6

Q ss_pred             HHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 009632          127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI  206 (530)
Q Consensus       127 ~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~  206 (530)
                      ++.+...++|+++.+|..|+..++.+..       +..++.|..+++|+++.||..++.+|..+....+.       .+.
T Consensus       623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~  688 (897)
T PRK13800        623 VAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APA  688 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHH
Confidence            4455666789999999999999887652       34667777888999999999999999888654332       245


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 009632          207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV  286 (530)
Q Consensus       207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  286 (530)
                      +...+.|+++.||..++..|+.+...         -.+.+...+.|+++.||..++.+|+.+..           .+.+.
T Consensus       689 L~~~L~~~d~~VR~~A~~aL~~~~~~---------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~  748 (897)
T PRK13800        689 LRDHLGSPDPVVRAAALDVLRALRAG---------DAALFAAALGDPDHRVRIEAVRALVSVDD-----------VESVA  748 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhccC---------CHHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHHH
Confidence            66677888999999999999886421         12345668899999999999999887521           13466


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHh
Q 009632          287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  366 (530)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  366 (530)
                      .++.|++++||.+++.+|+.+...-      ....+.+..+++|+++.||..++..++.+...       ..+.+.+...
T Consensus       749 ~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~a  815 (897)
T PRK13800        749 GAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATAA  815 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHHH
Confidence            7899999999999999999886421      12256677888999999999999999887532       1223457788


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc
Q 009632          367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  446 (530)
Q Consensus       367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~  446 (530)
                      |+|+++.||..|+.+|+.+..        +..++.|...++|+++.+|..++.+|+.+... .      ...+.+...++
T Consensus       816 L~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~-~------~a~~~L~~al~  880 (897)
T PRK13800        816 LRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWPGD-P------AARDALTTALT  880 (897)
T ss_pred             hcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCC-H------HHHHHHHHHHh
Confidence            999999999999999987532        34568888888999999999999999987311 1      13566778899


Q ss_pred             CCcHHHHHHHHHHHHH
Q 009632          447 DKVYSIRDAAANNLKR  462 (530)
Q Consensus       447 d~~~~Vr~~a~~~l~~  462 (530)
                      |++..||..|.++|..
T Consensus       881 D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        881 DSDADVRAYARRALAH  896 (897)
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            9999999999998863

>PTZ00429 beta-adaptin; Provisional

Probab=99.79  E-value=1.4e-14  Score=146.18  Aligned_cols=469  Identities=12%  Similarity=0.072  Sum_probs=303.7

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcch
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~   88 (530)
                      .+..+.+.|.+.+...|..+++.+-... .+|. +.. .+.+.+.. +..++.++|+.+...+.++++.  .++..-..+
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~m-t~G~-DvS-~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaI  107 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANM-TMGR-DVS-YLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAV  107 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCC-Cch-HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHH
Confidence            4567888899999988888887665542 2342 222 33333333 5677899999999888888662  233344456


Q ss_pred             hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-HHHHHHHH
Q 009632           89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSI  167 (530)
Q Consensus        89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~  167 (530)
                      +.|..-++|+++.+|-.|+++++.+    ....+.+.+.+.+.+.+.|+++.||..|+.++..++...++. ....+.+.
T Consensus       108 Ntl~KDl~d~Np~IRaLALRtLs~I----r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~  183 (746)
T PTZ00429        108 NTFLQDTTNSSPVVRALAVRTMMCI----RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD  183 (746)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence            6777778899999999999888876    334556677888888889999999999999999887765543 23457778


Q ss_pred             HHhhcCCCChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhhhhccHHH
Q 009632          168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPV  245 (530)
Q Consensus       168 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~  245 (530)
                      +.+++.|+++.|...|+.+|..+....+... .....+..+...+.+-++--+...++.+..   ..+. +.....++..
T Consensus       184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~  260 (746)
T PTZ00429        184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTR  260 (746)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHH
Confidence            8888999999999999999999976544311 112233334444444444445555555533   2221 1223457777


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhH
Q 009632          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP  322 (530)
Q Consensus       246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~  322 (530)
                      +...+++.++.|..++++++-.+.....++..   ...+.+.++.+ ..+++++|..++..+..+.... +..+... +.
T Consensus       261 l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~  337 (746)
T PTZ00429        261 VLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTN-LD  337 (746)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHH-HH
Confidence            77778888899999999988877654322211   11233455555 4566899999999998887644 3333222 33


Q ss_pred             hHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHH
Q 009632          323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  402 (530)
Q Consensus       323 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  402 (530)
                      .+.-..+|+. .+|...++.+..++..-.-    ..++.-+.....|.+.+++..++.+++.++..+..  ..+.++..|
T Consensus       338 ~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~L  410 (746)
T PTZ00429        338 SFYVRYSDPP-FVKLEKLRLLLKLVTPSVA----PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLL  410 (746)
T ss_pred             hhhcccCCcH-HHHHHHHHHHHHHcCcccH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHH
Confidence            3333345655 4888888888888754332    33445556666788888999999999988866532  345677777


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHH
Q 009632          403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  479 (530)
Q Consensus       403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~  479 (530)
                      .+++.+...-+ ..++..+..+........    +++.+...+   .=.++..|.+.+..+|+.+.....   ...++..
T Consensus       411 l~ll~~~~~~v-~e~i~vik~IlrkyP~~~----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~  482 (746)
T PTZ00429        411 LQIVDRRPELL-PQVVTAAKDIVRKYPELL----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQR  482 (746)
T ss_pred             HHHhcCCchhH-HHHHHHHHHHHHHCccHH----HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHH
Confidence            77776543322 345666666655444332    333333221   124566788888888887765532   2345555


Q ss_pred             HHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632          480 VLEMINNPHYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       480 l~~~~~d~~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      +.+.+.+.+..||...+.+..++.-..+.
T Consensus       483 ~i~~f~~E~~~VqlqlLta~vKlfl~~p~  511 (746)
T PTZ00429        483 FIDTIMEHEQRVQLAILSAAVKMFLRDPQ  511 (746)
T ss_pred             HHhhhccCCHHHHHHHHHHHHHHHhcCcH
Confidence            55556667778888888888877665543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.78  E-value=1.1e-14  Score=134.97  Aligned_cols=422  Identities=14%  Similarity=0.083  Sum_probs=289.8

Q ss_pred             cCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcc-cchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc
Q 009632           57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA  135 (530)
Q Consensus        57 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  135 (530)
                      .++++.+|..+...|.++..    .++..++.-+...++.+ ..+..|..|.-+|++-...-.++..             
T Consensus        15 LspD~n~rl~aE~ql~~l~~----~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~-------------   77 (858)
T COG5215          15 LSPDPNARLRAEAQLLELQS----GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQ-------------   77 (858)
T ss_pred             CCCCCCccccHHHHHHHhcc----ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHH-------------
Confidence            45667777777777766644    23333333333334443 3677888777666554332222111             


Q ss_pred             CCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCc
Q 009632          136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ  215 (530)
Q Consensus       136 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~  215 (530)
                            +..     ...+-.+..+.++++....+..+..+.|+.-..|++.++.++..--+...++.++..+.....|+.
T Consensus        78 ------~~~-----~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eq  146 (858)
T COG5215          78 ------KGC-----SQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQ  146 (858)
T ss_pred             ------HHH-----HHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccC
Confidence                  111     222334667788888899999999999999999999999999887777778889999999899887


Q ss_pred             h-hHHHHHHHHHHHHhhhcCchhhhhc---c-HHHHHHhc-CCCCHHHHHHHHHHHHHHHHH----hCCcccccchHHHH
Q 009632          216 D-SVRLLAVEGCAALGKLLEPQDCVAH---I-LPVIVNFS-QDKSWRVRYMVANQLYELCEA----VGPEPTRMDLVPAY  285 (530)
Q Consensus       216 ~-~vr~~a~~~l~~l~~~~~~~~~~~~---~-~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l  285 (530)
                      + .++..++.++++.++...++.....   + +..+.-.. +..+..||.++.++|..-...    +..+...+.++...
T Consensus       147 p~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv  226 (858)
T COG5215         147 PVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV  226 (858)
T ss_pred             chHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee
Confidence            6 4888899999999988877543322   2 22222223 346788999999999873332    33344456677777


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---------
Q 009632          286 VRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---------  353 (530)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---------  353 (530)
                      ....+.++.+++.++..++..+....-   +..+.+.+........++++..|...+++.++.+++.--.-         
T Consensus       227 ceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe  306 (858)
T COG5215         227 CEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE  306 (858)
T ss_pred             ehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence            777788899999999999988765321   11222333444456778999999999999998887421100         


Q ss_pred             ----------HHHHhHHHHHHHhhc-------CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHH
Q 009632          354 ----------ATIEQLLPIFLSLLK-------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA  416 (530)
Q Consensus       354 ----------~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~  416 (530)
                                .....++|.++++|.       +++|++-.+|..+|.-+.+..|. .+.+.++..+..-+.+++|+.|.+
T Consensus       307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-~i~~pVl~FvEqni~~~~w~nrea  385 (858)
T COG5215         307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-KIMRPVLGFVEQNIRSESWANREA  385 (858)
T ss_pred             CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-HhHHHHHHHHHHhccCchhhhHHH
Confidence                      013458899999885       35688999999999888887774 344557777778889999999999


Q ss_pred             HHHHHHHHHhhhChhh---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-hhhHHHHHhh---ccCCCh
Q 009632          417 IIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-QHITPQVLEM---INNPHY  489 (530)
Q Consensus       417 ~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~~---~~d~~~  489 (530)
                      ++.+++.+.+.-....   +.++.+|.+...+.|+.-.|+..++.|+|.|+......... .++.+.+...   +.| ++
T Consensus       386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p  464 (858)
T COG5215         386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CP  464 (858)
T ss_pred             HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cc
Confidence            9999999976544333   34678899999999999999999999999999876433211 2233322222   222 44


Q ss_pred             HHHHHHHHHHHHHhhhcCh
Q 009632          490 LYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       490 ~vr~~a~~~l~~i~~~~~~  508 (530)
                      .+-.++.+.+.+++.++.+
T Consensus       465 ~~~~ncsw~~~nlv~h~a~  483 (858)
T COG5215         465 FRSINCSWRKENLVDHIAK  483 (858)
T ss_pred             hHHhhhHHHHHhHHHhhhh
Confidence            5566777777777776654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.78  E-value=5.6e-15  Score=137.94  Aligned_cols=481  Identities=17%  Similarity=0.183  Sum_probs=305.6

Q ss_pred             HHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccC-CchHHHHHHHHHHhcccccCCC--ccchhcchhHH
Q 009632           16 DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPL   91 (530)
Q Consensus        16 ~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l   91 (530)
                      .-+.+.|+-.|....+..+.++.++|-+    +++|++.. +.+ .+-+-|....++...+...+|.  -.|..-++..+
T Consensus       288 pDi~~~deYVRnvt~ra~~vva~algv~----~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci  363 (975)
T COG5181         288 PDITSKDEYVRNVTGRAVGVVADALGVE----ELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCI  363 (975)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHH
Confidence            3456788888888888888888888754    66777766 322 2444555555554444444442  23455667777


Q ss_pred             HhhhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC--------------
Q 009632           92 ETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP--------------  154 (530)
Q Consensus        92 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~--------------  154 (530)
                      ..++.|+...||..++.+++.+++...+-.   +...+-|+.....+... ..-.+.....+.+.+              
T Consensus       364 ~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~tre~  442 (975)
T COG5181         364 SKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDTREH  442 (975)
T ss_pred             HHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCC-chHHHHHHHhccccccCChHhhhhhHHHH
Confidence            888889999999999999999988776622   22222232222211110 000011111111111              


Q ss_pred             ---------------------------CC---ChH-HHHHHHHHH-----------------------------------
Q 009632          155 ---------------------------SA---PDI-LKTELRSIY-----------------------------------  168 (530)
Q Consensus       155 ---------------------------~~---~~~-~~~~l~~~l-----------------------------------  168 (530)
                                                 ..   ++. ..+++.|.|                                   
T Consensus       443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v  522 (975)
T COG5181         443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRV  522 (975)
T ss_pred             HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHH
Confidence                                       11   111 122222222                                   


Q ss_pred             ----HhhcCCCChhHHHHHHHHHHHHHhhhcc--------------------------------------------hhhH
Q 009632          169 ----TQLCQDDMPMVRRSAASNLGKFAATVEP--------------------------------------------AHLK  200 (530)
Q Consensus       169 ----~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------------------------------------------~~~~  200 (530)
                          +....|+...-|+..+.....+...+|.                                            ..+.
T Consensus       523 ~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l  602 (975)
T COG5181         523 SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHL  602 (975)
T ss_pred             HHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcch
Confidence                2222344444566666666655554441                                            1223


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc---CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc--
Q 009632          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL---EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--  275 (530)
Q Consensus       201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--  275 (530)
                      +.++..+.+++.+..+.||..|+..++.++..+   ++......+--.+.+.+....+.|-....+++..+....+-.  
T Consensus       603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            456677777888899999999999999888765   444455666667777788888889888888888887765432  


Q ss_pred             -ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh----hCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc
Q 009632          276 -PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  350 (530)
Q Consensus       276 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  350 (530)
                       .-...++|.+...++..+..|..+.+..++.++..    +|...|....+..+ +.++.-+..+|..+.++++.++...
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv-d~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELV-DSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHHhhHHHHHhhhhhhhhHHhhc
Confidence             12456888888888888888888888888888864    34556654444433 3445566689999999999999999


Q ss_pred             CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh
Q 009632          351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  430 (530)
Q Consensus       351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~  430 (530)
                      |+..    ++..+++-|+-.+...|.+..-+++.+++..|+-    .++|.+..-...++..+....+.+++.+.+..|.
T Consensus       762 GPqd----vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~  833 (975)
T COG5181         762 GPQD----VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQ  833 (975)
T ss_pred             CHHH----HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHH
Confidence            8754    4455666666666667777766777776666643    4677776666667777777777777777776664


Q ss_pred             hh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---ChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          431 GF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       431 ~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~---~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      ..  +.-.+.|.+...+.|.++.=|..|...+..++-..   |.+...-.++..+....-++.+.+.+...+.+..+...
T Consensus       834 ~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~  913 (975)
T COG5181         834 ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATV  913 (975)
T ss_pred             HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHH
Confidence            33  33457788888888888888888888777776543   22222344555555666677888888888888888777


Q ss_pred             cChHH
Q 009632          506 MGSEI  510 (530)
Q Consensus       506 ~~~~~  510 (530)
                      +|.-.
T Consensus       914 lg~g~  918 (975)
T COG5181         914 LGSGA  918 (975)
T ss_pred             hccHH
Confidence            77543

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=3.2e-16  Score=159.99  Aligned_cols=463  Identities=19%  Similarity=0.211  Sum_probs=323.3

Q ss_pred             ccCCchHHHHHHHHHHhcccccCCC-cc---chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHH
Q 009632           56 NNDDDDEVLLAMAEELGVFIPYVGG-VE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK  131 (530)
Q Consensus        56 ~~d~~~~vr~~~~~~l~~~~~~~~~-~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~  131 (530)
                      +.+++|..|++.+..|-.+++++|. ++   +-+.|...|..+++|.|.-+++.|.++++-+-+.-+.......+-.++.
T Consensus       827 ~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~  906 (1702)
T KOG0915|consen  827 LTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVN  906 (1702)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHH
Confidence            5678999999999999888888873 22   2356777889999999999999999999887766555555556667777


Q ss_pred             HHhcCCccchhHHHH-hHh--hhhcCCC-----C----------hHHHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHh
Q 009632          132 RLAAGEWFTARVSAC-GLF--HIAYPSA-----P----------DILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAA  192 (530)
Q Consensus       132 ~l~~~~~~~~r~~~~-~~l--~~l~~~~-----~----------~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~  192 (530)
                      .+...+....+...- .++  |.+.+.-     +          +-.+++++-.|+++.+ +..|.-|+.|+-.++.+++
T Consensus       907 tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~  986 (1702)
T KOG0915|consen  907 TLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK  986 (1702)
T ss_pred             HHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHH
Confidence            777654322222111 111  1122111     0          1124667777887765 4589999999999999999


Q ss_pred             hhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009632          193 TVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL  268 (530)
Q Consensus       193 ~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l  268 (530)
                      ..+.  +.+...++|.+...-.|++..|+.+....|..+..--..  +.|.+.++.-+...+.++.|+||.++|-++..+
T Consensus       987 ~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen  987 QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred             HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            8876  567788999999999999999999988888887754222  456677777777788999999999999999999


Q ss_pred             HHHhCCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh----------CHHHHHhhhhHhHhH-hccCCcHH
Q 009632          269 CEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----------NPELAIQHILPCVKE-LSSDSSQH  334 (530)
Q Consensus       269 ~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----------~~~~~~~~l~~~l~~-~~~d~~~~  334 (530)
                      .+.-..+..   ..+++..+++.+.|=...||++|-++...+.+.+          ........++|.+.. ..-++-..
T Consensus      1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred             HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence            886443333   2356677777788888899999887776665543          123556788888853 22366778


Q ss_pred             HHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCChHHH-------------------HHHHH------hhHHhhh
Q 009632          335 VRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVR-------------------LNIIS------KLDQVNQ  387 (530)
Q Consensus       335 vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr-------------------~~a~~------~l~~l~~  387 (530)
                      +|...+..+..+++..|..  .+.+.+.|.+.+....-.+.|-                   ..++.      ++..++.
T Consensus      1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred             HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence            9999999999999887763  4567778888877765444332                   22211      1111122


Q ss_pred             hhchhHHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632          388 VIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (530)
Q Consensus       388 ~~~~~~~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~  464 (530)
                      .+. ....+++.|.+.+++..+ .-..|..+..++..++..+|.+.  +..+++..++..++|++..||.+-+.++|.++
T Consensus      1227 ~iD-~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YID-ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred             hhh-HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence            221 234578899998887665 56789999999999999998665  66789999999999999999999999999999


Q ss_pred             HHhChhHHhhhhHHHHHh-hccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHh
Q 009632          465 EEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVIN  521 (530)
Q Consensus       465 ~~~~~~~~~~~i~~~l~~-~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~  521 (530)
                      ..-.++.. +.++..+.. ++.+.+ ..+..++..+.++......  +.....++|...-
T Consensus      1306 k~Ss~dq~-qKLie~~l~~~l~k~e-s~~siscatis~Ian~s~e~Lkn~asaILPLiFL 1363 (1702)
T KOG0915|consen 1306 KFSSPDQM-QKLIETLLADLLGKDE-SLKSISCATISNIANYSQEMLKNYASAILPLIFL 1363 (1702)
T ss_pred             hcCChHHH-HHHHHHHHHHHhccCC-CccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHH
Confidence            88776543 445554443 333322 2225555555554443321  2235566775443

>PTZ00429 beta-adaptin; Provisional

Probab=99.77  E-value=4.3e-14  Score=142.62  Aligned_cols=472  Identities=10%  Similarity=0.036  Sum_probs=317.2

Q ss_pred             CCCCCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCC
Q 009632            1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG   79 (530)
Q Consensus         1 ~~~~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~   79 (530)
                      |.+|.+--.-+...+..+.++|...|+...-.+...++.. |+.. -..++.++. +.|+||.+|..+.+.|+.+    .
T Consensus        60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela-lLaINtl~KDl~d~Np~IRaLALRtLs~I----r  133 (746)
T PTZ00429         60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA-LLAVNTFLQDTTNSSPVVRALAVRTMMCI----R  133 (746)
T ss_pred             HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcC----C
Confidence            3455554455778889999999999999988888776532 2211 133555555 8899999999999999887    3


Q ss_pred             CccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH
Q 009632           80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (530)
Q Consensus        80 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~  159 (530)
                      .++....+.+.+...+.|.++.||+.|+.++.++....+.-.....+.+.+..++.|.++.|...|...+..+....+..
T Consensus       134 ~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~  213 (746)
T PTZ00429        134 VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK  213 (746)
T ss_pred             cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence            36777888888999999999999999999999998765532223346677778889999999999999888887554432


Q ss_pred             --HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch
Q 009632          160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ  236 (530)
Q Consensus       160 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (530)
                        .....+..+...+.+-++.-+-..++.|..   ..+. +.....++..+...+.+.++.|.-.|++++-.+.....++
T Consensus       214 l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~  290 (746)
T PTZ00429        214 IESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE  290 (746)
T ss_pred             hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence              122223333444444445555555555533   3232 2233567778888888899999999999998887654332


Q ss_pred             hhhhc----cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632          237 DCVAH----ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (530)
Q Consensus       237 ~~~~~----~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  312 (530)
                       ....    +.+.+..+ .++++.+|..++..+..+..... ..... -+..|.-..+|+. .||...+..|..++..-.
T Consensus       291 -~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~N  365 (746)
T PTZ00429        291 -LIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTPSV  365 (746)
T ss_pred             -HHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCccc
Confidence             2222    32444444 34567899999999888776532 22112 1344444556765 488888888888775433


Q ss_pred             HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 009632          313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (530)
Q Consensus       313 ~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  392 (530)
                      .    ..++.-+.+.+.+.+...+..++.+++.++..+.  .....++..+..++.+... +...++..+..+.......
T Consensus       366 v----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~--~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~  438 (746)
T PTZ00429        366 A----PEILKELAEYASGVDMVFVVEVVRAIASLAIKVD--SVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL  438 (746)
T ss_pred             H----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH
Confidence            3    3455556666678888999999999999986654  3466778888888877654 3445677788877665432


Q ss_pred             HHHhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632          393 LLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (530)
Q Consensus       393 ~~~~~l~~~l~~~~---~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  469 (530)
                          .+++.+....   .-.+...|.+.++.+|..+.....   ...++..+..-+.+....||...+.+...++-....
T Consensus       439 ----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~  511 (746)
T PTZ00429        439 ----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ  511 (746)
T ss_pred             ----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH
Confidence                2445554432   123577999999999998876543   233443344445567789999999998888766543


Q ss_pred             hHHhhhhHHHHH-hhcc-CCChHHHHHHHHHHHHH
Q 009632          470 EWAMQHITPQVL-EMIN-NPHYLYRMTILRAISLL  502 (530)
Q Consensus       470 ~~~~~~i~~~l~-~~~~-d~~~~vr~~a~~~l~~i  502 (530)
                      +.  +..+..+. .+.+ +.|+++|..|.....-+
T Consensus       512 ~~--~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL  544 (746)
T PTZ00429        512 GM--EPQLNRVLETVTTHSDDPDVRDRAFAYWRLL  544 (746)
T ss_pred             HH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            32  23344444 3334 46889998888766444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=3e-17  Score=163.79  Aligned_cols=283  Identities=22%  Similarity=0.294  Sum_probs=228.4

Q ss_pred             cHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC------HH
Q 009632          242 ILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN------PE  314 (530)
Q Consensus       242 ~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~------~~  314 (530)
                      +++.+...+.. .....|..+...+..++..+..+...+.++|+++-++.|+..+||..|+.++..+...+.      ..
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan  502 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN  502 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence            45555554443 345567788888888888888777778889999999999999999999988888776542      23


Q ss_pred             HHHhhhhHhHhHhccC-CcHHHHHHHHHHHHhhccccC------------------------H-------HHHHHhHHHH
Q 009632          315 LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG------------------------K-------DATIEQLLPI  362 (530)
Q Consensus       315 ~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~------------------------~-------~~~~~~l~~~  362 (530)
                      .+.+.++|.+..++.| ....||.+.+..++.++....                        .       ......+-..
T Consensus       503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~  582 (1431)
T KOG1240|consen  503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQM  582 (1431)
T ss_pred             hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHH
Confidence            5667888888888888 666888888888877653110                        0       0122344556


Q ss_pred             HHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 009632          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  442 (530)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~  442 (530)
                      +..++.|+.+.||.+.++.+..+|..+|.+...+-+++.|..+++|++|+.|.+..+.+..++-.+|.....+.++|.+.
T Consensus       583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~  662 (1431)
T KOG1240|consen  583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ  662 (1431)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence            67788999999999999999999999999888889999999999999999999999999999999999888999999999


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHh--ChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHH
Q 009632          443 QWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI  520 (530)
Q Consensus       443 ~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~  520 (530)
                      +.+.|....|-..|++++..+++..  .+. ...+++..+..++-+||..+|.+++..+..+...++..++...++|.+.
T Consensus       663 Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~-~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~ir  741 (1431)
T KOG1240|consen  663 QGLTDGEEAVIVSALGSLSILIKLGLLRKP-AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIR  741 (1431)
T ss_pred             HhccCcchhhHHHHHHHHHHHHHhcccchH-HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhH
Confidence            9999999999999999999988763  222 2356777888889999999999999999999999998877777777665


Q ss_pred             hhccC
Q 009632          521 NASKD  525 (530)
Q Consensus       521 ~~l~D  525 (530)
                      .+++-
T Consensus       742 pfl~~  746 (1431)
T KOG1240|consen  742 PFLER  746 (1431)
T ss_pred             Hhhhc
Confidence            55543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=5.8e-15  Score=136.61  Aligned_cols=441  Identities=15%  Similarity=0.173  Sum_probs=308.9

Q ss_pred             ccCCchHHHHHHHHHHhcccccCCCcc---chhcchh-HHHhhhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHH
Q 009632           56 NNDDDDEVLLAMAEELGVFIPYVGGVE---HAHVLLP-PLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIP  128 (530)
Q Consensus        56 ~~d~~~~vr~~~~~~l~~~~~~~~~~~---~~~~l~~-~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~  128 (530)
                      +.|+-.|.|+++|..+.++++.+-.+.   ....++. +...+....+...|++++.++...+-.++.+.   ....+.|
T Consensus         9 ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~P   88 (675)
T KOG0212|consen    9 LTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPP   88 (675)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHH
Confidence            457778899999999988887443222   2333333 55666677788888888888888777676654   3333444


Q ss_pred             HHHHHhcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHH
Q 009632          129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKT  201 (530)
Q Consensus       129 ~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~  201 (530)
                      .+ ...+|.+..+|+.||..+..+++....+   +.+++...+.++..|++..||.++ +.+..+.+...-    ....+
T Consensus        89 v~-~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~  166 (675)
T KOG0212|consen   89 VL-NCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLP  166 (675)
T ss_pred             HH-HhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHH
Confidence            44 4556777799999999998887766554   678999999999999999999765 556666554433    23468


Q ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc---
Q 009632          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---  276 (530)
Q Consensus       202 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---  276 (530)
                      .++|.+.+.+.+.++..|...+..+..+-..-+-+  .+.+.+++-+...++|++..||...-.+++++...+....   
T Consensus       167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~  246 (675)
T KOG0212|consen  167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM  246 (675)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            89999999999999999999888776654432222  3566788889999999999999988888888877664332   


Q ss_pred             cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH--HHhhhhHhHhHhccCCcH-HHHHHHHHHHHhhccccC--
Q 009632          277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLG--  351 (530)
Q Consensus       277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~--  351 (530)
                      .....++.+...+..++++++..|+.++..|....|.+.  +.+.++..+..++.|... ..+..+...-+.+.+.++  
T Consensus       247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~  326 (675)
T KOG0212|consen  247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE  326 (675)
T ss_pred             CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence            346788999999999999999999999999999888762  234444444455555554 344444333323332222  


Q ss_pred             ---HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 009632          352 ---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (530)
Q Consensus       352 ---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~  426 (530)
                         .+.-...++..+...+.++..+.|.++++=+..+....+.+-+  ...+++.+.+.++|++..+-..++..+..++.
T Consensus       327 ~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~  406 (675)
T KOG0212|consen  327 RLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS  406 (675)
T ss_pred             hhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence               2233457889999999999999999999998888887776543  47899999999999999999999999999887


Q ss_pred             hhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHh
Q 009632          427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLA  503 (530)
Q Consensus       427 ~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~i~  503 (530)
                      .-..... .+++.-++++......-++..+.-.+.+++-.+..+.+    ...+...+ +.+|...-..-++++..+.
T Consensus       407 s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~I----Yr~~a~ILe~e~nl~FAstMV~~Ln~iL  479 (675)
T KOG0212|consen  407 SSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERI----YRSIADILEREENLKFASTMVQALNTIL  479 (675)
T ss_pred             CcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHH----HHHHHHHHhccccchHHHHHHHHHHhhh
Confidence            5544322 23333444444555555677777777888877765432    22222211 2344444445555555443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=8.7e-15  Score=149.80  Aligned_cols=489  Identities=17%  Similarity=0.171  Sum_probs=325.1

Q ss_pred             HHHHHhcChhHHHHHHHhhcHHHHHHhhCh--Hhh--hhcccccccc-ccCCchHHHHHHHHHHhcccccCCCc------
Q 009632           13 VLIDELKNDDIQLRLNSIRRLSTIARALGE--ERT--RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV------   81 (530)
Q Consensus        13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~--~~~--~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~------   81 (530)
                      .+...+.|++++.|+.++-=|=.+...+|.  +..  .+++...+.. +.|+++-++..+++-||-+...-++.      
T Consensus       822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV  901 (1702)
T KOG0915|consen  822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLV  901 (1702)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHH
Confidence            444566799999999875544455566662  111  2244444444 55666666666665554322211000      


Q ss_pred             ------------------------------------c--------------chhcchhHHHhhhccc-chHHHHHHHHHH
Q 009632           82 ------------------------------------E--------------HAHVLLPPLETLCTVE-ETCVRDKAVESL  110 (530)
Q Consensus        82 ------------------------------------~--------------~~~~l~~~l~~l~~d~-~~~vR~~a~~~l  110 (530)
                                                          .              ..+.++--|+++.++. .+.-|..|+-++
T Consensus       902 ~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf  981 (1702)
T KOG0915|consen  902 DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGF  981 (1702)
T ss_pred             HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhch
Confidence                                                0              0022223355666553 688899999999


Q ss_pred             HHHHhhcChh--hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC---hHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 009632          111 CRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---DILKTELRSIYTQLCQDDMPMVRRSAAS  185 (530)
Q Consensus       111 ~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~a~~  185 (530)
                      +.|++....+  .....++|.+-+.--|++..++.+...+...+.....   +++.++|+.-++.-+.+..|+||.++|.
T Consensus       982 ~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReascl 1061 (1702)
T KOG0915|consen  982 GAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCL 1061 (1702)
T ss_pred             HHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            9999876442  2234467777777789999999988888888876533   4588999999999999999999999999


Q ss_pred             HHHHHHhhhcchhhHH---HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc----------hhhhhccHHHHHH-hcC
Q 009632          186 NLGKFAATVEPAHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----------QDCVAHILPVIVN-FSQ  251 (530)
Q Consensus       186 ~l~~l~~~~~~~~~~~---~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~~~~~l~~-~~~  251 (530)
                      ++..+...-+.+.+.+   ++...+...+.|-.+.||.+|-.+...+++.+-.          ......++|++.. ..-
T Consensus      1062 AL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim 1141 (1702)
T KOG0915|consen 1062 ALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM 1141 (1702)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc
Confidence            9999998866655544   4455555667777889999988887777765421          3456668888754 344


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHH-------------------HHHHHHH------H
Q 009632          252 DKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEV-------------------RIAAAGK------V  304 (530)
Q Consensus       252 d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~v-------------------r~~a~~~------l  304 (530)
                      ++...||+.+..++..+++..|...  +..+++|.+.+....-+|.|                   |..++++      +
T Consensus      1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi 1221 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETI 1221 (1702)
T ss_pred             cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHH
Confidence            7778999999999999999988753  45678898888877666555                   3333322      2


Q ss_pred             HHHHHhhCHHHHHhhhhHhHhHhccC-CcHHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHh
Q 009632          305 TKFCRILNPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISK  381 (530)
Q Consensus       305 ~~~~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~  381 (530)
                      +.+...++. ..++.++|.+.+++.. -.-..|.+++..+..+...+|.+  .+..+++..++..++|.++.+|.+...+
T Consensus      1222 ~~ci~~iD~-~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsA 1300 (1702)
T KOG0915|consen 1222 NKCINYIDI-SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASA 1300 (1702)
T ss_pred             HHHHHhhhH-HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHH
Confidence            222222222 3457788888877654 34567888889998888888764  5678899999999999999999999999


Q ss_pred             hHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh--hhHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632          382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (530)
Q Consensus       382 l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~  459 (530)
                      ++.+.+.-.++...+.+-..+..++.+.+. .+..++..+..++.....  +.+...++|.++-...+..    ++-...
T Consensus      1301 mG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~----Ka~q~L 1375 (1702)
T KOG0915|consen 1301 MGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEE----KANQEL 1375 (1702)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHH----HHHHHH
Confidence            999999888777655555555555554433 225555555555443321  1234668998877666542    222222


Q ss_pred             HHHHHHHh--Chh-----HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632          460 LKRLAEEF--GPE-----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       460 l~~l~~~~--~~~-----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      ...+...+  |..     ...+.+.+...+..++..|.+|..+..++..++....
T Consensus      1376 w~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1376 WNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred             HHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccccc
Confidence            33333322  111     1224455666667788889999999999888876543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=4.4e-16  Score=155.60  Aligned_cols=271  Identities=20%  Similarity=0.217  Sum_probs=160.6

Q ss_pred             ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc------hhhhhccHHHHHHh
Q 009632          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNF  249 (530)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~  249 (530)
                      ...-|..|++.|..++.+...+...+.++|+++.++.|++..||..|++++..+...+.+      ..|.++++|.+..+
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l  515 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL  515 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence            456788999999999999999999999999999999999999999999999988776543      45778999999999


Q ss_pred             cCC-CCHHHHHHHHHHHHHHHHHhCCcc------------------c---------c----cchHHHHHHhcCCCcHHHH
Q 009632          250 SQD-KSWRVRYMVANQLYELCEAVGPEP------------------T---------R----MDLVPAYVRLLRDNEAEVR  297 (530)
Q Consensus       250 ~~d-~~~~vr~~~~~~l~~l~~~~~~~~------------------~---------~----~~l~~~l~~~l~d~~~~vr  297 (530)
                      ..| ....||.+.+.+|+.++.....-.                  +         .    ..+-..+..++.|+.+.||
T Consensus       516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vk  595 (1431)
T KOG1240|consen  516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVK  595 (1431)
T ss_pred             hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            999 677899999999999886521100                  0         0    0112222334444444555


Q ss_pred             HHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHH
Q 009632          298 IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN  377 (530)
Q Consensus       298 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~  377 (530)
                      .+.++++..+|..+|.+.--..+++.+..+++|++|+.|.+..+.+..++-.+|.....+.++|++.+.|.|..+.|-..
T Consensus       596 r~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~  675 (1431)
T KOG1240|consen  596 RALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVS  675 (1431)
T ss_pred             HHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHH
Confidence            55555555555555544443444444555555555555555555554444444444444455555555555555555555


Q ss_pred             HHHhhHHhhhhhchh-HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc
Q 009632          378 IISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  446 (530)
Q Consensus       378 a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~  446 (530)
                      |+.++..+++.---+ ....+++.....++-.+|-.+|.+++..+..++..++.....-.++|++-.++.
T Consensus       676 aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~  745 (1431)
T KOG1240|consen  676 ALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE  745 (1431)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence            544444444421111 111223333333344444445555555555554444444444444444444443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=7.7e-14  Score=131.27  Aligned_cols=344  Identities=15%  Similarity=0.131  Sum_probs=252.1

Q ss_pred             HHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-
Q 009632          161 KTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-  235 (530)
Q Consensus       161 ~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-  235 (530)
                      ...++|.+.+.+. +.++.++..|+.+|.+++..-..   .......+|.|.+++.+++..|++.|+.+|+.++..-+. 
T Consensus       107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence            4457777777664 77899999999999999874332   233456889999999999999999999999998865432 


Q ss_pred             --hhhhhccHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632          236 --QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (530)
Q Consensus       236 --~~~~~~~~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  309 (530)
                        -.....+++.+..++.... -...+.+.+++.+++..-.+..   ....++|.+..++.+.+++|...|+.++..+..
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd  266 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD  266 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence              1122335666666665544 3677889999999998753322   245799999999999999999999999999986


Q ss_pred             hhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhc-CCChHHHHHHHHhh
Q 009632          310 ILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLK-DEFPDVRLNIISKL  382 (530)
Q Consensus       310 ~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l  382 (530)
                      .-...   .+...++|.+.+++...+..++..+++.++.++..-+..   -.....+|.+..++. .+...+|..|+.++
T Consensus       267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i  346 (514)
T KOG0166|consen  267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI  346 (514)
T ss_pred             CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence            43332   234567899999999999999999999999976433211   124467899999998 55667999999999


Q ss_pred             HHhhhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH----HHHHHHHHHHHhcCCcHHHHHH
Q 009632          383 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDA  455 (530)
Q Consensus       383 ~~l~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~Vr~~  455 (530)
                      +++...-..   ..+...++|.+...++..++++|..|+++++++...-.++..    ...+++.+..+|.-++..+-..
T Consensus       347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v  426 (514)
T KOG0166|consen  347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILV  426 (514)
T ss_pred             HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHH
Confidence            998763211   112357899999999999999999999999999876654442    2346777778887667766677


Q ss_pred             HHHHHHHHHHHh---Ch---hHHh-----hhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          456 AANNLKRLAEEF---GP---EWAM-----QHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       456 a~~~l~~l~~~~---~~---~~~~-----~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      ++.++..|.+..   +.   ....     ..-+..+..+.++.|.++...|...+.+...
T Consensus       427 ~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~  486 (514)
T KOG0166|consen  427 ALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS  486 (514)
T ss_pred             HHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            777777666543   21   1111     2335566666777888899888888887654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.1e-13  Score=130.23  Aligned_cols=341  Identities=15%  Similarity=0.181  Sum_probs=256.6

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcCch---
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ---  236 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~---  236 (530)
                      .+.....+.+.++..+..+...+..+...-..    +.....++|.+.+.+. +.++.++..|..+|..++......   
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            34444555555666677777777777654433    2334568899999886 667899999999999999876542   


Q ss_pred             hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCCcH-HHHHHHHHHHHHHHHhhC
Q 009632          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILN  312 (530)
Q Consensus       237 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~  312 (530)
                      ......+|.+..++.+++..|+..+.++|++++....   +-......++.++.++..+.+ .....+.++|..++..-.
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            2345689999999999999999999999999974321   111233567777777776664 677789999999998763


Q ss_pred             HH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632          313 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (530)
Q Consensus       313 ~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (530)
                      +.   .....++|.+..++.+.+..|..-++.+++.+.......   .....+.|.+..+|...+..++..|+.+++++.
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            32   345788999999999999999999999999887644322   224467899999999999999999999999976


Q ss_pred             hhhchh---HHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhCh---hhHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632          387 QVIGID---LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (530)
Q Consensus       387 ~~~~~~---~~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~  459 (530)
                      ..-+..   -+....+|.|..++. ++...+|..|+++++++...-..   ..+...++|.+.+++...+..+|..|+.+
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            432221   123567889988887 56677999999999999862221   11345689999999999999999999999


Q ss_pred             HHHHHHHhChhHH----hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          460 LKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       460 l~~l~~~~~~~~~----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      ++.+.....+++.    ...+++.+..++.-++.++-..++.++.++.+.
T Consensus       388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV  437 (514)
T ss_pred             HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence            9998877554432    256788888888777888888888888888664

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2.5e-12  Score=123.85  Aligned_cols=459  Identities=17%  Similarity=0.126  Sum_probs=283.1

Q ss_pred             HHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccc-cccCCchHHHHHHHHHHhcccccCCCccchhcchhH
Q 009632           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS-ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (530)
Q Consensus        12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~-~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~   90 (530)
                      ..|.+-|.|........|++.|-.+..+ | ++ ...+.|.+- ....+|.+|++.+-..|-.+++.  .++..-.=+..
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~-G-~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSInt  112 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAK-G-KD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSINT  112 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhc-C-Cc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHHH
Confidence            4677778888888999999887664322 2 22 345555544 47789999999999888888762  22222222466


Q ss_pred             HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh
Q 009632           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (530)
Q Consensus        91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~  170 (530)
                      +..-+.|+++.+|..|+.++..|    .-..+.+.++-.++....|+++.||..|+.++..+... +++...++...+..
T Consensus       113 fQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k~qL~e~I~~  187 (968)
T KOG1060|consen  113 FQKALKDPNQLIRASALRVLSSI----RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQKDQLEEVIKK  187 (968)
T ss_pred             HHhhhcCCcHHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhHHHHHHHHHH
Confidence            88888999999999999988877    22334556667778888899999999999999888865 44455599999999


Q ss_pred             hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc-C-c-------------
Q 009632          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-E-P-------------  235 (530)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~-~-------------  235 (530)
                      ++.|.++.|--+|+.++..++..--  .....-+..+.+++.|-++==+...+..|...+++. . +             
T Consensus       188 LLaD~splVvgsAv~AF~evCPerl--dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~  265 (968)
T KOG1060|consen  188 LLADRSPLVVGSAVMAFEEVCPERL--DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRS  265 (968)
T ss_pred             HhcCCCCcchhHHHHHHHHhchhHH--HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccc
Confidence            9999999999999998888764211  111112223334444433323444455555555432 1 1             


Q ss_pred             ----------------hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHH
Q 009632          236 ----------------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA  299 (530)
Q Consensus       236 ----------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~  299 (530)
                                      +.-...++.....++.+.++.|-.++++.+..++...    ....+...+++++..+ .+++.-
T Consensus       266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~-~~vqyv  340 (968)
T KOG1060|consen  266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN-REVQYV  340 (968)
T ss_pred             ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC-Ccchhh
Confidence                            0112236666677888888889888888888877542    2345677778877765 478888


Q ss_pred             HHHHHHHHHHhhCH--------------------------------HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632          300 AAGKVTKFCRILNP--------------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (530)
Q Consensus       300 a~~~l~~~~~~~~~--------------------------------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~  347 (530)
                      .++++..++..-..                                +.-...+++-+...+++.+.++-..++++++..+
T Consensus       341 vL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA  420 (968)
T KOG1060|consen  341 VLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCA  420 (968)
T ss_pred             hHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            88888777653210                                0001223333333334444455566666666665


Q ss_pred             cccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHh
Q 009632          348 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLAS  426 (530)
Q Consensus       348 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~  426 (530)
                      ...+  .+.+..+.-+..+++..+..|-..++..+..+.+.-..+.  ..++..|.+++..- -+.-|...++.++..+.
T Consensus       421 ~~~~--sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~ARA~IiWLige~~e  496 (968)
T KOG1060|consen  421 SRIG--SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAARAGIIWLIGEYCE  496 (968)
T ss_pred             HhhC--chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence            5544  2334555566666666666666666666666655432222  23444454444332 24455555666655554


Q ss_pred             hhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc-cCCChHHHHHH
Q 009632          427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTI  495 (530)
Q Consensus       427 ~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~a  495 (530)
                      ...  ....+++..+.+-+.|....||...+..-..+.-.-..+  ...+...+..+. .|++|++|..+
T Consensus       497 ~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRDRa  562 (968)
T KOG1060|consen  497 IVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRDRA  562 (968)
T ss_pred             hcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhHHH
Confidence            322  123445555566667888888888887766654332211  233444555544 37888887754

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.56  E-value=1.3e-10  Score=114.86  Aligned_cols=359  Identities=16%  Similarity=0.168  Sum_probs=243.7

Q ss_pred             HHHHhHhhhhcCCCChH-HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhH
Q 009632          143 VSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSV  218 (530)
Q Consensus       143 ~~~~~~l~~l~~~~~~~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~v  218 (530)
                      ..++.++..+....... ..+++.+.+...+..+++.||..++..++.++..-..   -.....+++.+...+.|++..|
T Consensus        56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~V  135 (503)
T PF10508_consen   56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSV  135 (503)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHH
Confidence            45667777777666554 5788889999999999999999999999888754322   1123568899999999999999


Q ss_pred             HHHHHHHHHHHhhhcCc-h-hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCc
Q 009632          219 RLLAVEGCAALGKLLEP-Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNE  293 (530)
Q Consensus       219 r~~a~~~l~~l~~~~~~-~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~  293 (530)
                      ...|+.++..++..-.. + -+.+...+.+..++...+..+|..++..+..++.......   ....+++.++..+++++
T Consensus       136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD  215 (503)
T PF10508_consen  136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD  215 (503)
T ss_pred             HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc
Confidence            99999999999875332 1 1233447778888877677888888888888876533211   12358899999999988


Q ss_pred             HHHHHHHHHHHHHHHHhhCHHH-H-HhhhhHhHhHhcc----CC-cHHHH-HHHHHHHHhhccccCHH--HHHHhHHHHH
Q 009632          294 AEVRIAAAGKVTKFCRILNPEL-A-IQHILPCVKELSS----DS-SQHVR-SALASVIMGMAPLLGKD--ATIEQLLPIF  363 (530)
Q Consensus       294 ~~vr~~a~~~l~~~~~~~~~~~-~-~~~l~~~l~~~~~----d~-~~~vr-~~~~~~l~~l~~~~~~~--~~~~~l~~~l  363 (530)
                      .-++.+++..+..++..-..-. + ...+++.+.+++.    |+ ...+. .+.+..++.++..-+..  ...+.++..+
T Consensus       216 iLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l  295 (503)
T PF10508_consen  216 ILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERL  295 (503)
T ss_pred             HHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            8999999999999987322111 1 2335555555543    33 11111 23335555555542221  1245677777


Q ss_pred             HHhhcCCChHHHHHHHHhhHHhhhhhchhH-H-------HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh---hh
Q 009632          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDL-L-------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF  432 (530)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~-------~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~---~~  432 (530)
                      ..++...+...+..|+++++.++....... +       .+.++..+.....+....+|..++++++.+......   +.
T Consensus       296 ~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~  375 (503)
T PF10508_consen  296 FSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND  375 (503)
T ss_pred             HHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH
Confidence            888889999999999999999985432211 1       133455555556667778999999999999654332   00


Q ss_pred             H---HHH--------HHH-HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh------hhhHHHHHhhccCCChHHHHH
Q 009632          433 F---DDK--------LGA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM------QHITPQVLEMINNPHYLYRMT  494 (530)
Q Consensus       433 ~---~~~--------~~~-~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~------~~i~~~l~~~~~d~~~~vr~~  494 (530)
                      .   ...        -.. .++.+++.|-+++|.++...+..++..   +|..      ..++..+.+.-.++++..++.
T Consensus       376 i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~---~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~  452 (503)
T PF10508_consen  376 ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ---PWGQREICSSPGFIEYLLDRSTETTKEGKEA  452 (503)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC---HHHHHHHHhCccHHhhhcCCCCCCCHHHHHH
Confidence            0   000        111 778888999999999999999988854   3433      445666665556667766665


Q ss_pred             HHHHHHHHhh
Q 009632          495 ILRAISLLAP  504 (530)
Q Consensus       495 a~~~l~~i~~  504 (530)
                      =...+..+..
T Consensus       453 K~~ii~~l~~  462 (503)
T PF10508_consen  453 KYDIIKALAK  462 (503)
T ss_pred             HHHHHHHHHh
Confidence            5555555553

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1.1e-12  Score=115.38  Aligned_cols=376  Identities=17%  Similarity=0.126  Sum_probs=255.6

Q ss_pred             ccccccccccCCchHHHHHHHHHHhcccccCCCccchhcch---hHHHhhhcccchHHHHHHHHHHHHHHhhcChhh-h-
Q 009632           48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL---PPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L-  122 (530)
Q Consensus        48 ~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~---~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~-  122 (530)
                      ..-|.+.-+.+.++.++..++.++|+++-..+..-..-.+.   +++.+..+| ...||-.|+.|+-+++..-.... + 
T Consensus        86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA  164 (550)
T KOG4224|consen   86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIA  164 (550)
T ss_pred             hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhh
Confidence            33444444667888999999999999887655433333333   355555555 46788889999999887622211 1 


Q ss_pred             -hhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHH-----HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc
Q 009632          123 -VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP  196 (530)
Q Consensus       123 -~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~  196 (530)
                       ...+.|+.. +.+.++.++|..+...+..+...  .+.+     ..-+|.+..++...++.||+.++.+++.++-.-..
T Consensus       165 ~sGaL~pltr-LakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~  241 (550)
T KOG4224|consen  165 RSGALEPLTR-LAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA  241 (550)
T ss_pred             hccchhhhHh-hcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence             233666666 88888888888887777655432  1222     23458899999999999999999999998753322


Q ss_pred             ----hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632          197 ----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (530)
Q Consensus       197 ----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  270 (530)
                          ....+.++|.+.+++.|+++.++..|.-++..++.....  +.....-+|.+.++++++.-..-.+...++.+++-
T Consensus       242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi  321 (550)
T KOG4224|consen  242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI  321 (550)
T ss_pred             HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc
Confidence                122356999999999999999999999999988764332  33345578999999988765555555667766665


Q ss_pred             HhCCcc--cccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHH
Q 009632          271 AVGPEP--TRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIM  344 (530)
Q Consensus       271 ~~~~~~--~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~  344 (530)
                      .-+.+.  ....++..+++++.-.+ .+++.+|...|..++......   .+...-+|.+..++-|..-.+|..+-.++.
T Consensus       322 hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a  401 (550)
T KOG4224|consen  322 HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA  401 (550)
T ss_pred             ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence            544332  23356777888887554 459999999998887644322   233455778888888988888887777777


Q ss_pred             hhccc--cCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh------H--HHhhHHHHHHHHhcCCChHHH
Q 009632          345 GMAPL--LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------L--LSQSLLPAIVELAEDRHWRVR  414 (530)
Q Consensus       345 ~l~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~--~~~~l~~~l~~~~~~~~~~~R  414 (530)
                      .++-.  .........++|.++.+..+.+.+||..++.++.+++......      |  -.+.+-..+..++.+....+|
T Consensus       402 ~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~  481 (550)
T KOG4224|consen  402 QLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFR  481 (550)
T ss_pred             HHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHH
Confidence            66532  2223345578999999999999999999999999987643210      0  012334445555555555566


Q ss_pred             HHHHHHHHHHHhh
Q 009632          415 LAIIEYIPLLASQ  427 (530)
Q Consensus       415 ~~~~~~l~~l~~~  427 (530)
                      ..+.+++.++...
T Consensus       482 hia~wTI~qLle~  494 (550)
T KOG4224|consen  482 HIARWTIQQLLED  494 (550)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666555543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=5.5e-10  Score=112.02  Aligned_cols=422  Identities=15%  Similarity=0.079  Sum_probs=264.7

Q ss_pred             hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCC--CChHHH
Q 009632           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS--APDILK  161 (530)
Q Consensus        84 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~--~~~~~~  161 (530)
                      .+.++..|...++|.+..||..|+++++++...++.+-..+.+...+..+..-+.+..-+.+|.+++.++..  +.+...
T Consensus       339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l  418 (1133)
T KOG1943|consen  339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL  418 (1133)
T ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence            345666777788999999999999999999999997666666666666444444566777899999998754  456677


Q ss_pred             HHHHHHHHhhcC--------CCChhHHHHHHHHHHHHHhhhcchhh---HHHHHH-HHHHhhcCCchhHHHHHHHHHHHH
Q 009632          162 TELRSIYTQLCQ--------DDMPMVRRSAASNLGKFAATVEPAHL---KTDIMS-IFEDLTQDDQDSVRLLAVEGCAAL  229 (530)
Q Consensus       162 ~~l~~~l~~l~~--------d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~~-~l~~~~~d~~~~vr~~a~~~l~~l  229 (530)
                      .+++|.+.+.+.        .....||.+|+..+=+++....+...   .+.+.+ .+...+-|.+-.+|.+|..++-..
T Consensus       419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~  498 (1133)
T KOG1943|consen  419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQEN  498 (1133)
T ss_pred             HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHH
Confidence            889998887664        34567999999999999987766433   333333 445567899889998887766554


Q ss_pred             hhhcCc-----h-------------------------hhhhccHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHhCCc
Q 009632          230 GKLLEP-----Q-------------------------DCVAHILPVIVNFS----QDKSWRVRYMVANQLYELCEAVGPE  275 (530)
Q Consensus       230 ~~~~~~-----~-------------------------~~~~~~~~~l~~~~----~d~~~~vr~~~~~~l~~l~~~~~~~  275 (530)
                      ....|.     +                         .+..+.-|.+..++    .+.+..+|..++.+|.++...-.+.
T Consensus       499 VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~  578 (1133)
T KOG1943|consen  499 VGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY  578 (1133)
T ss_pred             hccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh
Confidence            332211     1                         11222334444443    4557789999999999977654433


Q ss_pred             ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----------HH--HhhhhHhHhHhccCC--cHHHHHHHHH
Q 009632          276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----------LA--IQHILPCVKELSSDS--SQHVRSALAS  341 (530)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----------~~--~~~l~~~l~~~~~d~--~~~vr~~~~~  341 (530)
                      . ....+|.++......+...|..+..+.+.+...+-.-          .+  ...++|.+...--.+  ..-.|.+...
T Consensus       579 ~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~  657 (1133)
T KOG1943|consen  579 L-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLK  657 (1133)
T ss_pred             h-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHH
Confidence            2 4456677777777777888888888887776543110          00  111222221111111  1234555555


Q ss_pred             HHHhhcccc---CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh--chhHHHhhHHHHHHHHhcCC-ChHHHH
Q 009632          342 VIMGMAPLL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVELAEDR-HWRVRL  415 (530)
Q Consensus       342 ~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~~~~~-~~~~R~  415 (530)
                      .+..+...-   ..+++......++.+.+.+.+ .+|..+.++++.++..+  +.+.....++......+.+. +.++|.
T Consensus       658 ~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~  736 (1133)
T KOG1943|consen  658 FIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRR  736 (1133)
T ss_pred             HHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHH
Confidence            554443221   123444445555666665555 89999999999998654  22222223444444444444 778888


Q ss_pred             HHHHHHHHHHhhhChhhHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChh-------HHhhhhHHHHHhhccCC
Q 009632          416 AIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPE-------WAMQHITPQVLEMINNP  487 (530)
Q Consensus       416 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~-------~~~~~i~~~l~~~~~d~  487 (530)
                      ....+++.+....=.....+.+-..++... .|..++-|...+.++..++...+..       .+.+.++.++.+...|.
T Consensus       737 g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~  816 (1133)
T KOG1943|consen  737 GLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDS  816 (1133)
T ss_pred             HHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccccc
Confidence            888888776543333333344433343333 3447788999999999998887621       12244455555544443


Q ss_pred             ----ChHHHHHHHHHHHHHhhhcC
Q 009632          488 ----HYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       488 ----~~~vr~~a~~~l~~i~~~~~  507 (530)
                          ...||+.|+.++..+.....
T Consensus       817 rGDVGswVReaAm~al~~~~~~l~  840 (1133)
T KOG1943|consen  817 RGDVGSWVREAAMKALSSLLDTLS  840 (1133)
T ss_pred             CccHHHHHHHHHHHHHHhhhhhhc
Confidence                44699999999999876554

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.47  E-value=3.6e-10  Score=105.62  Aligned_cols=466  Identities=11%  Similarity=0.073  Sum_probs=282.5

Q ss_pred             HHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccc-cccccCCch-HHHHHHHHHHhcccccCCCccchhcchhH
Q 009632           13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPF-LSENNDDDD-EVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (530)
Q Consensus        13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~-l~~~~d~~~-~vr~~~~~~l~~~~~~~~~~~~~~~l~~~   90 (530)
                      .++...++.|+..|+....++.+++..- .+..  ....- +.+++...+ .+|..|.+.|-.+..    .+....+-.+
T Consensus        69 ~i~KlFQhkd~~Lrq~VY~aIkelS~~t-edvl--m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid----~~tv~~~er~  141 (898)
T COG5240          69 AILKLFQHKDLYLRQCVYSAIKELSKLT-EDVL--MGTSSIMKDLNGGVPDDVKPMAIRSLFSVID----GETVYDFERY  141 (898)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHhhcc-hhhh--HHHHHHHHhhccCCccccccHHHHHHHHhcC----cchhhhHHHH
Confidence            4556677999999998777777664321 1111  00111 222333333 456666655544433    1223344445


Q ss_pred             HHhhhcccchHHHHHHHHHHHHHHhh-------cChhhhhhhHHHHHHHHh---------cCCccchhHHHHhHhhhhcC
Q 009632           91 LETLCTVEETCVRDKAVESLCRIGSQ-------MRESDLVDWYIPLVKRLA---------AGEWFTARVSACGLFHIAYP  154 (530)
Q Consensus        91 l~~l~~d~~~~vR~~a~~~l~~l~~~-------~~~~~~~~~l~~~l~~l~---------~~~~~~~r~~~~~~l~~l~~  154 (530)
                      +.+..-++...+|.+|+-.--.+...       |..+..+. ++. +.+..         .+.++-.+++|..++..+-+
T Consensus       142 l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qea-v~~-l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr  219 (898)
T COG5240         142 LNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEA-VLD-LKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKR  219 (898)
T ss_pred             hhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHH-Hhh-HhhCcCccCCcccCCCCChHHHHHHHHHHHHHhc
Confidence            66666788888888876433333221       11111111 111 11111         11123445566666655433


Q ss_pred             CCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhc-chhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632          155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (530)
Q Consensus       155 ~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  233 (530)
                      .-. -....++..+..   ..+-.-..+-+..+......+. +..+...+.|++...++|.-+.|...+++++..++...
T Consensus       220 ~dk-ma~lklv~hf~~---n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n  295 (898)
T COG5240         220 TDK-MAQLKLVEHFRG---NASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN  295 (898)
T ss_pred             ccH-HHHHHHHHHhhc---ccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc
Confidence            211 011122222221   1111111122222222222222 24456778899999999988889999999999888665


Q ss_pred             CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 009632          234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (530)
Q Consensus       234 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  313 (530)
                      -...+....+..+..+++......|-++...|.+++...+....  ..-+-+..++.|.+.   ..+..++..+.+. |.
T Consensus       296 v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~--vcN~evEsLIsd~Nr---~IstyAITtLLKT-Gt  369 (898)
T COG5240         296 VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS--VCNKEVESLISDENR---TISTYAITTLLKT-GT  369 (898)
T ss_pred             cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee--ecChhHHHHhhcccc---cchHHHHHHHHHc-Cc
Confidence            33345677888889999999999999999999999987655432  233556667777764   4455566666554 44


Q ss_pred             HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc-CCChHHHHHHHHhhHHhhhhhchh
Q 009632          314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID  392 (530)
Q Consensus       314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~  392 (530)
                      +.-...++..+..++.|-+...+.-++.++..++..++.+.  ..++.++...|. .+-.+.+..+++++..+.+.... 
T Consensus       370 ~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~-  446 (898)
T COG5240         370 EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD-  446 (898)
T ss_pred             hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch-
Confidence            44446777777777777777777777888888887776432  234455555444 45678999999999998877542 


Q ss_pred             HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH
Q 009632          393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  472 (530)
Q Consensus       393 ~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~  472 (530)
                       ..+..+..|+.++.|..+.  +.++..++.+++..+...-....+.++.+-+-=.+.-||.+|+.+|..++-.....+.
T Consensus       447 -skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~  523 (898)
T COG5240         447 -SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS  523 (898)
T ss_pred             -HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Confidence             2467788888888887654  4555666666554332222223344444433335667999999999988877666666


Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632          473 MQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (530)
Q Consensus       473 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~  503 (530)
                      .+.+...+.++++|.+.+||..|..++..+-
T Consensus       524 ~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         524 PQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            7889999999999999999999998887764

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.47  E-value=2.7e-10  Score=112.59  Aligned_cols=370  Identities=15%  Similarity=0.136  Sum_probs=239.5

Q ss_pred             ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhc
Q 009632           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLC  172 (530)
Q Consensus        97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~  172 (530)
                      +.+.+.-..++.+|..+.....+......+.+.+...+.++++.+|..++..++.+.......    ....+++.+..++
T Consensus        49 ~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L  128 (503)
T PF10508_consen   49 TSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL  128 (503)
T ss_pred             hcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence            334444466777788887777777666667788888888888888888877777766554332    2366888888889


Q ss_pred             CCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHH
Q 009632          173 QDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIV  247 (530)
Q Consensus       173 ~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~  247 (530)
                      .|++..|.+.|+.+|..++..-..-  .+.+.+.+.+.+++...++.+|..+.+.+..++..-...   .....+++.+.
T Consensus       129 ~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll  208 (503)
T PF10508_consen  129 RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLL  208 (503)
T ss_pred             cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHH
Confidence            9999999999999999988753221  222334677778887777888988888888887654331   11234777777


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhC-Ccc-cccchHHHHHHhcCCCcHHHH------HHHHHHHHHHHHhhCHHHH---
Q 009632          248 NFSQDKSWRVRYMVANQLYELCEAVG-PEP-TRMDLVPAYVRLLRDNEAEVR------IAAAGKVTKFCRILNPELA---  316 (530)
Q Consensus       248 ~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~-~~~~l~~~l~~~l~d~~~~vr------~~a~~~l~~~~~~~~~~~~---  316 (530)
                      ..+++++.-+|..+++.+..++..-. -+. ....+++.+.+.+.+.+.+-|      -..++.++.++.. .+..+   
T Consensus       209 ~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~  287 (503)
T PF10508_consen  209 KELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLEL  287 (503)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHH
Confidence            77888888899999999998887211 111 133466767776654322111      1222444444443 33322   


Q ss_pred             HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH--------HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632          317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       317 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  388 (530)
                      .+.++..+..+.++.+...+..++.+++.++........        ...++..+.........++|..++.+++.+...
T Consensus       288 ~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~  367 (503)
T PF10508_consen  288 YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS  367 (503)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence            244455555666778888999999999998865432222        234455555566677788999999999999643


Q ss_pred             hch-----------hHHH---hhHHH-HHHHHhcCCChHHHHHHHHHHHHHHhh-hChhhHH--HHHHHHHHHHhcCCcH
Q 009632          389 IGI-----------DLLS---QSLLP-AIVELAEDRHWRVRLAIIEYIPLLASQ-LGVGFFD--DKLGALCMQWLQDKVY  450 (530)
Q Consensus       389 ~~~-----------~~~~---~~l~~-~l~~~~~~~~~~~R~~~~~~l~~l~~~-~~~~~~~--~~~~~~l~~~l~d~~~  450 (530)
                      .+.           .|+.   +.-.. .+..+++.|.+.+|.++...+..++.. .|...+.  ..++.+++.--.+.+.
T Consensus       368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K  447 (503)
T PF10508_consen  368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTK  447 (503)
T ss_pred             CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCH
Confidence            322           1111   11122 667778889999999999999998764 2333222  2244444444445666


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 009632          451 SIRDAAANNLKRLAEEF  467 (530)
Q Consensus       451 ~Vr~~a~~~l~~l~~~~  467 (530)
                      ..++.=..++..+....
T Consensus       448 ~~ke~K~~ii~~l~~~~  464 (503)
T PF10508_consen  448 EGKEAKYDIIKALAKSS  464 (503)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            77777777777776443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=4.6e-12  Score=111.57  Aligned_cols=343  Identities=15%  Similarity=0.143  Sum_probs=246.6

Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhH---HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh--
Q 009632          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK---TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--  237 (530)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--  237 (530)
                      +....+..++.+.++.+..++..++++++-.+++....   -.+-+.+.+.++|.. +||..++.++.+++..-+...  
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~d~nk~ki  163 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATFDSNKVKI  163 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhccccchhhh
Confidence            34455566778889999999999999999888774332   235567778888764 688889999999887733211  


Q ss_pred             hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-
Q 009632          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-  314 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-  314 (530)
                      -...-+..+..+-+.++.++|..+..++.++...-..  ......-+|.++.+++..+++||..+..+++.++-.-... 
T Consensus       164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk  243 (550)
T KOG4224|consen  164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK  243 (550)
T ss_pred             hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence            1122444556688888999999999998887754322  1223346899999999999999999999999886532221 


Q ss_pred             ---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 009632          315 ---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (530)
Q Consensus       315 ---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  389 (530)
                         ...+.++|.+.++..|.+.+++..+.-++..++..-..  +.....-+|.+..+++++.-..-.+.+.++.++.-.-
T Consensus       244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp  323 (550)
T KOG4224|consen  244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP  323 (550)
T ss_pred             HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence               11256899999999999999999999999988764321  2233445899999999887666555555665554332


Q ss_pred             chhH--HHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632          390 GIDL--LSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (530)
Q Consensus       390 ~~~~--~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  463 (530)
                      +.+.  ....++..++.++.-. +..+...|+..+..++....   ..++...-+|.+..++.|..-.||...-.|+..+
T Consensus       324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L  403 (550)
T KOG4224|consen  324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL  403 (550)
T ss_pred             CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence            2221  1134555666776554 45699999999999886433   2234455788899999999999999988888887


Q ss_pred             HHHh--ChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632          464 AEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (530)
Q Consensus       464 ~~~~--~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~  506 (530)
                      .-.-  ...+....++|.++.+..+.+.+||-++..++.++....
T Consensus       404 al~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  404 ALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             HhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence            6432  222334668999999999999999999999999987654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=2.1e-09  Score=107.92  Aligned_cols=484  Identities=15%  Similarity=0.095  Sum_probs=256.9

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-cc-CCchHHHHHHHHHHhccccc-CCCccchhc
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPY-VGGVEHAHV   86 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~-d~~~~vr~~~~~~l~~~~~~-~~~~~~~~~   86 (530)
                      .+..|++.+++.|...|+.|.++++.+...++++ ...+.+.-+.+ .+ -+++...-.++-+|+.++.- +--+.....
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~d  420 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLED  420 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            4678889999999999999999999988776532 22232222222 11 12344555666666666541 001222345


Q ss_pred             chhHHHhhhc--------ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH----hcCCccchhHHHHhHhhhhcC
Q 009632           87 LLPPLETLCT--------VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL----AAGEWFTARVSACGLFHIAYP  154 (530)
Q Consensus        87 l~~~l~~l~~--------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l----~~~~~~~~r~~~~~~l~~l~~  154 (530)
                      ++|++...+.        .....||++|+..+=.++....+.++.+++-.+...+    .=|.....|.+|..++-+...
T Consensus       421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VG  500 (1133)
T KOG1943|consen  421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVG  500 (1133)
T ss_pred             HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhc
Confidence            5555554332        2234577777777777766666655555322222222    234444455544444433332


Q ss_pred             CCChH-HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHh----hcCCchhHHHHHHHHHHHH
Q 009632          155 SAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL----TQDDQDSVRLLAVEGCAAL  229 (530)
Q Consensus       155 ~~~~~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~----~~d~~~~vr~~a~~~l~~l  229 (530)
                      ..+.- .--+    +....+.-+-.-|..+...+......++     .+.-|.+..+    +.+-+..+|..+..+|..+
T Consensus       501 R~~n~p~Gi~----Lis~~dy~sV~~rsNcy~~l~~~ia~~~-----~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L  571 (1133)
T KOG1943|consen  501 RQGNFPHGIS----LISTIDYFSVTNRSNCYLDLCVSIAEFS-----GYREPVFNHLLTKKVCHWDVKIRELAAYALHKL  571 (1133)
T ss_pred             cCCCCCCchh----hhhhcchhhhhhhhhHHHHHhHHHHhhh-----hHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence            21110 0000    0011111122223333333333222211     1222333333    5567889999999999998


Q ss_pred             hhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--c----------cc-chHHHHHHhcCCC-cHH
Q 009632          230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--T----------RM-DLVPAYVRLLRDN-EAE  295 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~----------~~-~l~~~l~~~l~d~-~~~  295 (530)
                      +...++. ..++.+|.+.......+...|.....+.+.+...+..-.  +          .. .+.|.+...+.-. ..-
T Consensus       572 s~~~pk~-~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~l  650 (1133)
T KOG1943|consen  572 SLTEPKY-LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTL  650 (1133)
T ss_pred             HHhhHHh-hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHH
Confidence            7765543 455666666666666677788777777666654432111  0          00 1122222222111 123


Q ss_pred             HHHHHHHHHHHHHHhhC---HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC--HHHHHHhHHHHHHHhhc-C
Q 009632          296 VRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLK-D  369 (530)
Q Consensus       296 vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~-d  369 (530)
                      .|.+..+.+..+...-.   .+.+.+..-..+.+...+++ .+|.++...++.++...-  .+.....+....+..+. .
T Consensus       651 mr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~  729 (1133)
T KOG1943|consen  651 MRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKC  729 (1133)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCc
Confidence            34444444444332211   12233333344444455666 899999999988875431  12122233333344444 4


Q ss_pred             CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhhChhhH---HHHHHHHHHHHh
Q 009632          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWL  445 (530)
Q Consensus       370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~~~~~---~~~~~~~l~~~l  445 (530)
                      .+..+|.....+++.+...+-.-...+.+...+....... ...-|+..+.++..+.+..+...+   .+++...+++.+
T Consensus       730 ~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~l  809 (1133)
T KOG1943|consen  730 SEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNAL  809 (1133)
T ss_pred             hHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            4677888888888777643322233344555444443333 567899999999998888773222   244555666665


Q ss_pred             cC--------CcHHHHHHHHHHHHHHHHHhC-hhHHhhhh----HHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          446 QD--------KVYSIRDAAANNLKRLAEEFG-PEWAMQHI----TPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       446 ~d--------~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~i----~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      .|        --..||++|.+++..+..... ++...++.    +-.+.+-.-++-...|+.|+.++.++...
T Consensus       810 ddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~  882 (1133)
T KOG1943|consen  810 DDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH  882 (1133)
T ss_pred             hhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence            43        224799999999999887764 33333333    33333434466667799999999988765

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=5e-10  Score=108.45  Aligned_cols=330  Identities=17%  Similarity=0.137  Sum_probs=203.2

Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhh
Q 009632          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA  240 (530)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (530)
                      ...++|.+.+.....+.+||+-+.-.|-.+++.-++....+  +..+.+.++|+|+.+|..|+..+..+--.    .+.+
T Consensus        69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS--IntfQk~L~DpN~LiRasALRvlSsIRvp----~IaP  142 (968)
T KOG1060|consen   69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS--INTFQKALKDPNQLIRASALRVLSSIRVP----MIAP  142 (968)
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee--HHHHHhhhcCCcHHHHHHHHHHHHhcchh----hHHH
Confidence            34556666666667788888888777777777554433222  46677778888888888888877765311    1223


Q ss_pred             ccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh----hC----
Q 009632          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI----LN----  312 (530)
Q Consensus       241 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~----~~----  312 (530)
                      .++-.+.+...|.++.||+.++.+|.++...-. +. ...+...+..++.|.+|-|-.+|+-++..+|..    ++    
T Consensus       143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~-k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyr  220 (968)
T KOG1060|consen  143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQ-KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYR  220 (968)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hh-HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHH
Confidence            344445566778888888888888877765422 22 236777777788888888877777777666531    00    


Q ss_pred             --------HHHH-----H-----------------------------------------------hhhhHhHhHhccCCc
Q 009632          313 --------PELA-----I-----------------------------------------------QHILPCVKELSSDSS  332 (530)
Q Consensus       313 --------~~~~-----~-----------------------------------------------~~l~~~l~~~~~d~~  332 (530)
                              -+.|     .                                               ..++....-++.+.+
T Consensus       221 klC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n  300 (968)
T KOG1060|consen  221 KLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRN  300 (968)
T ss_pred             HHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCC
Confidence                    0011     0                                               111222222333445


Q ss_pred             HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc----------------------
Q 009632          333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----------------------  390 (530)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------------  390 (530)
                      +.|-.++++.+..++...    -...+...+.++|.. +..++...+.++..++..-.                      
T Consensus       301 ~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~  375 (968)
T KOG1060|consen  301 PSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKI  375 (968)
T ss_pred             cHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHH
Confidence            556666666666655432    233445555555543 34566666666655543210                      


Q ss_pred             ----------hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 009632          391 ----------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNL  460 (530)
Q Consensus       391 ----------~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l  460 (530)
                                .+.-...|++-+..+.++.+.++-.++++++|.+++..+.  +.+..+..+..++...+.-|-..++..+
T Consensus       376 lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vI  453 (968)
T KOG1060|consen  376 LKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVI  453 (968)
T ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHH
Confidence                      0111245677777778888777888888999888876653  3556777788888888888888888888


Q ss_pred             HHHHHHhChhHHhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHhhhcC
Q 009632          461 KRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       461 ~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~~~~~  507 (530)
                      ..+.+.-..+  ..+++..|.+++..- -..-|...+|.+|..++.++
T Consensus       454 k~Llq~~p~~--h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vp  499 (968)
T KOG1060|consen  454 KRLLQKDPAE--HLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVP  499 (968)
T ss_pred             HHHHhhChHH--HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc
Confidence            8887764322  234666666666432 33457777787777776543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=2.1e-10  Score=108.85  Aligned_cols=392  Identities=19%  Similarity=0.151  Sum_probs=235.3

Q ss_pred             ccCCchHHHHHHHHHHhcc-cccCCCccchhcchhHHHhhh-cccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH
Q 009632           56 NNDDDDEVLLAMAEELGVF-IPYVGGVEHAHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL  133 (530)
Q Consensus        56 ~~d~~~~vr~~~~~~l~~~-~~~~~~~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l  133 (530)
                      ..|.++++|...+..++.+ +..-+  .....+.......+ ...+..|-....+.+-.++....+......+.--....
T Consensus        88 ~fDs~~s~~~K~~~l~~~l~~~~~~--~s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~  165 (823)
T KOG2259|consen   88 IFDSDESSRKKLAILLGILEADFEN--GSTDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKV  165 (823)
T ss_pred             hccccchhhhHHHHHhhHhhhhhcc--CchhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHH
Confidence            5677778887777777766 33222  12223332222222 22244444444445544444433322222111111111


Q ss_pred             -hcCCccchhHHHHhHhhhhcCCCC--hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHh
Q 009632          134 -AAGEWFTARVSACGLFHIAYPSAP--DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL  210 (530)
Q Consensus       134 -~~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  210 (530)
                       ..+.+...|..+......+....+  +...+.+...+..+++|.+++||..|+++|-.+.+.+   .....++....+.
T Consensus       166 ~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~  242 (823)
T KOG2259|consen  166 RSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKH  242 (823)
T ss_pred             hhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHH
Confidence             112233444444333333322211  1234555566888999999999999999998888733   2234577888899


Q ss_pred             hcCCchhHHHHHHHHHHHHhhhcC-c-------hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchH
Q 009632          211 TQDDQDSVRLLAVEGCAALGKLLE-P-------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV  282 (530)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~-~-------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  282 (530)
                      +.|+++.||.+|++.+..+++..+ +       ....+..+..++..+.|.+|.||..+++.||.+-....      .++
T Consensus       243 lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe------e~i  316 (823)
T KOG2259|consen  243 LSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE------EII  316 (823)
T ss_pred             hcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH------HHH
Confidence            999999999999999999998772 1       12345577888889999999999999999998875422      121


Q ss_pred             HH-HHH-hcC-CCcHHH---HHHHHHHHHHHHH------hhCHHH---HHhhhh-----HhHhHhccCCcHHHHHHHHHH
Q 009632          283 PA-YVR-LLR-DNEAEV---RIAAAGKVTKFCR------ILNPEL---AIQHIL-----PCVKELSSDSSQHVRSALASV  342 (530)
Q Consensus       283 ~~-l~~-~l~-d~~~~v---r~~a~~~l~~~~~------~~~~~~---~~~~l~-----~~l~~~~~d~~~~vr~~~~~~  342 (530)
                      .. +-+ ++. +..+..   |-....+-+.+..      ..+.+.   -...++     ..+...++|.-..||.++..+
T Consensus       317 ~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~S  396 (823)
T KOG2259|consen  317 QQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVAS  396 (823)
T ss_pred             HHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHH
Confidence            11 111 111 000000   0011111111110      001110   011222     234555678889999999999


Q ss_pred             HHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 009632          343 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  422 (530)
Q Consensus       343 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~  422 (530)
                      ++.++..-+  .|....+.++..+++|+...||..|+.+|..+...+.   +.+..++.+...+.|.+..+|++.-..+.
T Consensus       397 l~~La~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  397 LCSLATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             HHHHHcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999986443  3556677889999999999999999999999987744   34678888889999999999999887776


Q ss_pred             HHHhhhChhhHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632          423 LLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (530)
Q Consensus       423 ~l~~~~~~~~~~---~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  469 (530)
                      . ++..+.+.+.   ..++..+..+=+|     |.....|++.|.++.+.
T Consensus       472 ~-~~~~d~~~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~~  515 (823)
T KOG2259|consen  472 N-ARVSDLECIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHRR  515 (823)
T ss_pred             h-cCCCcHHHHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccChh
Confidence            5 3333333322   2233333333334     67788999999888763

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=7.7e-10  Score=107.70  Aligned_cols=474  Identities=14%  Similarity=0.138  Sum_probs=288.9

Q ss_pred             CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccc-cccccCCchHHHHHHHHHHhcccccCCCccchh
Q 009632            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPF-LSENNDDDDEVLLAMAEELGVFIPYVGGVEHAH   85 (530)
Q Consensus         7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~-l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~   85 (530)
                      ..-.+..+...+.+.-+..|..|++..-.- ..+| .+.. .+.|- +......+-+..+..-..+.+.++  +.++..-
T Consensus        11 ~k~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G-~DvS-slF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~a~   85 (734)
T KOG1061|consen   11 KKGEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVG-KDVS-SLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDLAI   85 (734)
T ss_pred             hhhhchHHHHHhhhhhhhhHHHHHHHHHhc-CccC-cchH-hhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchHHH
Confidence            334566777778777777888887654322 2234 2232 33333 333444557777777777888777  3334444


Q ss_pred             cchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-HHHHH
Q 009632           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTEL  164 (530)
Q Consensus        86 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l  164 (530)
                      ..++.+..-+.|+++.+|..|+..++.+    +-+.+..++..-+....+|+++.+|..+..+...+...-.+. ....+
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl  161 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGL  161 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccch
Confidence            5566777778899999999998877765    344555666666677888899999999988888777654443 44668


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh-hhh
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVA  240 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~  240 (530)
                      .+.+..++.|++|.|=..|+.++..+.+.-+..   .....++..+.+.+..-++=-+   +..+..+....++.. -..
T Consensus       162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea~  238 (734)
T KOG1061|consen  162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREAE  238 (734)
T ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhHH
Confidence            888889999999999999999999998865431   1122333333333332221112   223344444444322 122


Q ss_pred             ccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-----
Q 009632          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-----  313 (530)
Q Consensus       241 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-----  313 (530)
                      .++..+...+.+.+..|--.+.+.+......+..  +....++-|.+..++.... ++...++..+..+....+.     
T Consensus       239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~  317 (734)
T KOG1061|consen  239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVE  317 (734)
T ss_pred             HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhH
Confidence            3555555556666666666666666655554433  1122344455555555444 7777777776665543221     


Q ss_pred             ---------------------------HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHh
Q 009632          314 ---------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  366 (530)
Q Consensus       314 ---------------------------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  366 (530)
                                                 +...+.+++-+.....+.+...-..++++++.++-.....   ...+..++.+
T Consensus       318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLel  394 (734)
T KOG1061|consen  318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLEL  394 (734)
T ss_pred             hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHH
Confidence                                       0112334444555555666666667778888776554432   5677888888


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHh
Q 009632          367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (530)
Q Consensus       367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l  445 (530)
                      ++-....|-+.++..+..+...+....  +.+.+.+.....+ .++..|.+.++.++.-+..+..   ...++..+.+..
T Consensus       395 l~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~  469 (734)
T KOG1061|consen  395 LETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENF  469 (734)
T ss_pred             HhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhc
Confidence            886666666666666666665554321  4566665444333 3577999999999998877665   345777788888


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc-cC-CChHHHHHHHHHHHHHh
Q 009632          446 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NN-PHYLYRMTILRAISLLA  503 (530)
Q Consensus       446 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d-~~~~vr~~a~~~l~~i~  503 (530)
                      .|...+|+...+-+.-.++-..+.+  .++.+..+.... .| .+.++|..++....-+.
T Consensus       470 ~dE~~~Vql~LLta~ik~Fl~~p~~--tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs  527 (734)
T KOG1061|consen  470 KDETAEVQLELLTAAIKLFLKKPTE--TQELLQGVLPLATADTDNPDLRDRGLIYWRLLS  527 (734)
T ss_pred             ccchHHHHHHHHHHHHHHHhcCCcc--HHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence            8999998887777655544433322  244555554443 33 35577776665544443

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.33  E-value=2.4e-10  Score=99.99  Aligned_cols=339  Identities=14%  Similarity=0.113  Sum_probs=216.5

Q ss_pred             HHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---h
Q 009632          164 LRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---Q  236 (530)
Q Consensus       164 l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~  236 (530)
                      ++|.|.+++.. ...-..-.|+.+|.+++..-..   -.+....+|.|.+++.+.+..||..++.+|+.++.--+.   -
T Consensus       115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~  194 (526)
T COG5064         115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY  194 (526)
T ss_pred             ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence            44555555532 2333455777788887764333   123345789999999999999999999999888743221   1


Q ss_pred             hhhhccHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632          237 DCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (530)
Q Consensus       237 ~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  311 (530)
                      ......+..+..++.+.  +...-+.+-++|.+++..-.+..   ...+.+|.+.+++...+++|-..|..++..+...-
T Consensus       195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~  274 (526)
T COG5064         195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP  274 (526)
T ss_pred             HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence            11222344444444433  23556667888999987654332   35678999999999999999999999999887532


Q ss_pred             CHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHh
Q 009632          312 NPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (530)
Q Consensus       312 ~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  385 (530)
                      ...   .+-..+.+.+.+++.+++..+...+++.++.+...-...   ...-..++.+..+|..+...+|..++.++.++
T Consensus       275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI  354 (526)
T COG5064         275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI  354 (526)
T ss_pred             HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence            211   122345667788888999899999999998876432211   11234567788889999899999999999988


Q ss_pred             hhhhchh---HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--hhh----HHHHHHHHHHHHhcCCcHHHHHHH
Q 009632          386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF----FDDKLGALCMQWLQDKVYSIRDAA  456 (530)
Q Consensus       386 ~~~~~~~---~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~~~----~~~~~~~~l~~~l~d~~~~Vr~~a  456 (530)
                      ...-...   .+...++|.|..+++..++.+|..||++++......-  ++.    +.+-++..+-.+|.-.+..+-+.+
T Consensus       355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~  434 (526)
T COG5064         355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA  434 (526)
T ss_pred             ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence            6432211   1235789999999999999999999999998765432  111    112233344445543222244444


Q ss_pred             HHHHHHHHHHhChhH--------------H-hhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632          457 ANNLKRLAEEFGPEW--------------A-MQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (530)
Q Consensus       457 ~~~l~~l~~~~~~~~--------------~-~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~  503 (530)
                      +.++..+.+. |+.+              + ....+..+..+.+..|..+-..|...+..+.
T Consensus       435 LD~~eniLk~-Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF  495 (526)
T COG5064         435 LDAIENILKV-GEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF  495 (526)
T ss_pred             HHHHHHHHhh-hhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence            5555555443 2211              0 1234556666666667777777776666543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.31  E-value=1e-07  Score=99.31  Aligned_cols=453  Identities=16%  Similarity=0.128  Sum_probs=258.3

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchh
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~   89 (530)
                      +..++-.+..+-...|..|+++|..+++.-+.--..++....+.. .+|....||.+|...+|+++-.  .++.......
T Consensus       818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~--~~e~~~qyY~  895 (1692)
T KOG1020|consen  818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS--IPELIFQYYD  895 (1692)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc--cHHHHHHHHH
Confidence            345667788899999999999999997753322234444455555 7899999999999999988763  3456666667


Q ss_pred             HHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----------
Q 009632           90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----------  159 (530)
Q Consensus        90 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----------  159 (530)
                      .+.+-..|+...||+.+++.+..++...+.=.....+...+..-.+|+...++..++..+..+|..-.+.          
T Consensus       896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~k  975 (1692)
T KOG1020|consen  896 QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARK  975 (1692)
T ss_pred             HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHh
Confidence            7777788999999999999999999876641111112222222234444445555555555544211000          


Q ss_pred             -----------------HHHHHH----------------------------HHHHhh------------cCCCChhHHHH
Q 009632          160 -----------------LKTELR----------------------------SIYTQL------------CQDDMPMVRRS  182 (530)
Q Consensus       160 -----------------~~~~l~----------------------------~~l~~l------------~~d~~~~vR~~  182 (530)
                                       ..++++                            .++.++            ..+.+.++|..
T Consensus       976 I~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~ 1055 (1692)
T KOG1020|consen  976 ISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLL 1055 (1692)
T ss_pred             hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHH
Confidence                             000111                            111000            00122233332


Q ss_pred             HH-HHHHHHHhhhcc---hhhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCH
Q 009632          183 AA-SNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSW  255 (530)
Q Consensus       183 a~-~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~  255 (530)
                      ++ ..|..|++..+.   ..+..-+.|++..-... ++..+-...+..+..+......  +.+...+-.-+...+-..+.
T Consensus      1056 ~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~ 1135 (1692)
T KOG1020|consen 1056 AYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGM 1135 (1692)
T ss_pred             HHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch
Confidence            22 222222222221   12222334444333111 1222333333333333333221  22222222233333333333


Q ss_pred             HHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcC-------CC----cHHHHHHHHHHHHHHHHhhC--------H--
Q 009632          256 RVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLR-------DN----EAEVRIAAAGKVTKFCRILN--------P--  313 (530)
Q Consensus       256 ~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~-------d~----~~~vr~~a~~~l~~~~~~~~--------~--  313 (530)
                      ..-..+..|++.++....... ....++..+...+.       ++    ....-.-.+.++|.++..+.        +  
T Consensus      1136 a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~ 1215 (1692)
T KOG1020|consen 1136 ATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTF 1215 (1692)
T ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccc
Confidence            344445556666665433222 12233333333331       22    11122334566777777542        1  


Q ss_pred             ----HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHH--HHHHHHhhHHhhh
Q 009632          314 ----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV--RLNIISKLDQVNQ  387 (530)
Q Consensus       314 ----~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v--r~~a~~~l~~l~~  387 (530)
                          ....+.++-.+.-+.++.+..+|..++..++.++-.-+.-.+...+...+...|.|.+...  +..++.++..+..
T Consensus      1216 ~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1216 LQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLL 1295 (1692)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence                1345666777777778888999999999999998777666667778888888887764432  4555555544432


Q ss_pred             h------------------------------hch----hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH
Q 009632          388 V------------------------------IGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  433 (530)
Q Consensus       388 ~------------------------------~~~----~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~  433 (530)
                      .                              .|.    ..+.+.+++.+.+.+-+.+-++|..|+..+..+...-=..  
T Consensus      1296 eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVh-- 1373 (1692)
T KOG1020|consen 1296 EEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVH-- 1373 (1692)
T ss_pred             HHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCC--
Confidence            1                              011    1245778888888889999999999999998776531111  


Q ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       434 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                      ..+.+|++..+-.|+....|..|-..+..|-+.+
T Consensus      1374 P~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY 1407 (1692)
T KOG1020|consen 1374 PVHCVPTLIALETDPSQAIRHVADELLKEIDEKY 1407 (1692)
T ss_pred             ccchhhhheeecCChHHHHHHHHHHHHHHHHHhh
Confidence            1347899999999999999999999999887665

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.31  E-value=2.2e-09  Score=101.87  Aligned_cols=277  Identities=22%  Similarity=0.273  Sum_probs=195.4

Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhcc
Q 009632          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (530)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  242 (530)
                      ...+.+.+.+.|+++.+|..+...++.+..        ...+|.+.+++.|.++.||..|+.+++.+..        +..
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            345667778888899999999988776553        5678899999999999999999997776542        224


Q ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc------------HHHHHHHHHHHHHHHH
Q 009632          243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE------------AEVRIAAAGKVTKFCR  309 (530)
Q Consensus       243 ~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~~~~  309 (530)
                      .|.+...++ |.++.||..++.+|+.+...        .-+..++..+.|+.            ..+|..+..+++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            455555555 78999999999999887642        22444555565544            3578888877777754


Q ss_pred             hhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 009632          310 ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (530)
Q Consensus       310 ~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  389 (530)
                              +...+.+...+.+....+|..++..++.+....      ..+.+.+...+.|+++.+|..++..++.+..  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    345666777778888899999998888875432      3566778888899999999999988887643  


Q ss_pred             chhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632          390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (530)
Q Consensus       390 ~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  469 (530)
                            +...+.+...+.+.++.++..+....+..    +    ...-.+.+...+.|....+|..+...++.+....  
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--  306 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGAL----D----LAEAALPLLLLLIDEANAVRLEAALALGQIGQEK--  306 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhccc----C----chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc--
Confidence                  34556666777888887777766665511    1    1123455666777888889999998888765432  


Q ss_pred             hHHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632          470 EWAMQHITPQVLEMINNPHYLYRMTILRAISL  501 (530)
Q Consensus       470 ~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~  501 (530)
                            ..........+.+..+|..+......
T Consensus       307 ------~~~a~~~~~~~~~~~~~~~~~~~~~~  332 (335)
T COG1413         307 ------AVAALLLALEDGDADVRKAALILLEG  332 (335)
T ss_pred             ------hHHHHHHHhcCCchhhHHHHHHHHHh
Confidence                  23344445667777777776665543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.27  E-value=2.5e-10  Score=99.98  Aligned_cols=339  Identities=13%  Similarity=0.086  Sum_probs=224.0

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcCchh---
Q 009632          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQD---  237 (530)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~---  237 (530)
                      |.+.+-+.+.+-+-...+..-+..+...-..    ......++|.|.+++. ...+-.+-.|..++..++...+...   
T Consensus        74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV  153 (526)
T COG5064          74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV  153 (526)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence            3333333334444444444444444432221    1223457899999994 4445567788899999987765532   


Q ss_pred             hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCCcH--HHHHHHHHHHHHHHHhhC
Q 009632          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILN  312 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~  312 (530)
                      .....+|.+.+++.+.+..||..+.++||+++--..   +-......+..++.++..+.+  ..-..+-..|..++..-.
T Consensus       154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn  233 (526)
T COG5064         154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN  233 (526)
T ss_pred             EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence            234578999999999999999999999999873211   111122345556666665544  455678888999987554


Q ss_pred             HH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632          313 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (530)
Q Consensus       313 ~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (530)
                      +.   ......+|.+.+++...++.+-.-++.+++.+...-...   .....+.+-+..+|..++..+..-++...+++.
T Consensus       234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV  313 (526)
T COG5064         234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV  313 (526)
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence            32   334677899999999999999999999988886532211   122344566888899999999988988888876


Q ss_pred             hhhchh---HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh---hHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 009632          387 QVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNL  460 (530)
Q Consensus       387 ~~~~~~---~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l  460 (530)
                      ..-...   .+.-..++.+..+++++...+|..+|+.++.+...-...   .....++|.+.+++...+..+|+.||.++
T Consensus       314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi  393 (526)
T COG5064         314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI  393 (526)
T ss_pred             ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            432211   112346777888889998899999999999885432211   13356899999999999999999999998


Q ss_pred             HHHHHHh-ChhH-----HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          461 KRLAEEF-GPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       461 ~~l~~~~-~~~~-----~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      ....... +.+.     ..+-++..|.+++.-.+..+-+.++.++.++.+
T Consensus       394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk  443 (526)
T COG5064         394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK  443 (526)
T ss_pred             HhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence            8765432 1111     113445556666655555555666777776654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=5.2e-08  Score=95.26  Aligned_cols=427  Identities=14%  Similarity=0.119  Sum_probs=238.2

Q ss_pred             ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc
Q 009632           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA  135 (530)
Q Consensus        56 ~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  135 (530)
                      ++.++.-+...|--++|++    ++++....+.|-+.++++..++.||+.|+.|.-++....+.  ..+.+.+....++.
T Consensus       116 L~s~nq~vVglAL~alg~i----~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~  189 (866)
T KOG1062|consen  116 LNSSNQYVVGLALCALGNI----CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLC  189 (866)
T ss_pred             ccCCCeeehHHHHHHhhcc----CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHh
Confidence            5556655555555555655    33778888999999999999999999999999999887653  44556667777777


Q ss_pred             CCccchhHHHHhHhhhhcCCCChH--HH----HHHHHHHHhhcCC-----------CChhHHHHHHHHHHHHHhhhcchh
Q 009632          136 GEWFTARVSACGLFHIAYPSAPDI--LK----TELRSIYTQLCQD-----------DMPMVRRSAASNLGKFAATVEPAH  198 (530)
Q Consensus       136 ~~~~~~r~~~~~~l~~l~~~~~~~--~~----~~l~~~l~~l~~d-----------~~~~vR~~a~~~l~~l~~~~~~~~  198 (530)
                      +.+..|-..+..++..+++..++.  +.    ..++..+.++...           ++|-.+-..+..|.-+...-.+  
T Consensus       190 ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d--  267 (866)
T KOG1062|consen  190 EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD--  267 (866)
T ss_pred             hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc--
Confidence            888888888888887777765442  22    3334444444331           2455566666666555543221  


Q ss_pred             hHHHHHHHHHHhhcCC--chhHH-HHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc
Q 009632          199 LKTDIMSIFEDLTQDD--QDSVR-LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE  275 (530)
Q Consensus       199 ~~~~l~~~l~~~~~d~--~~~vr-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  275 (530)
                      ..+.+-+.+-+.....  +..+- ..-.++...+....+.......-+.++-+++.+++-..|..+...|......-...
T Consensus       268 aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~a  347 (866)
T KOG1062|consen  268 ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTA  347 (866)
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHH
Confidence            1122222233332211  11111 11122233333333333333333444444444444555555555555544321110


Q ss_pred             ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH
Q 009632          276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT  355 (530)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~  355 (530)
                        .+.=-..++.+++|+++.+|..|++.+-.+...-.-..+.+.++.++    ...+...|..++..+..+++.+.++..
T Consensus       348 --vqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL----~~~d~~~k~~~as~I~~laEkfaP~k~  421 (866)
T KOG1062|consen  348 --VQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFL----ESSDEDFKADIASKIAELAEKFAPDKR  421 (866)
T ss_pred             --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHhcCCcch
Confidence              11123456788999999999999998888876544444444444444    445677888888888888887765321


Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh-chhH--HHhhHHHHHHHH--hcCCChHHHHHHHHHHHHHHhhhCh
Q 009632          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL--LSQSLLPAIVEL--AEDRHWRVRLAIIEYIPLLASQLGV  430 (530)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~--~~~~l~~~l~~~--~~~~~~~~R~~~~~~l~~l~~~~~~  430 (530)
                        =.+..+...+...-.-|+..+..++-.++..- +...  ....+...+...  ..-+....-+.+.+++|.-+..+-.
T Consensus       422 --W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~  499 (866)
T KOG1062|consen  422 --WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLD  499 (866)
T ss_pred             --hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhc
Confidence              11233444444444455655555555554432 2111  011122222111  1112344567788888887754311


Q ss_pred             --------hhHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHH
Q 009632          431 --------GFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAIS  500 (530)
Q Consensus       431 --------~~~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~  500 (530)
                              ..-...++..+.+.+..  ....++..|+-++-.+...+...  .+++-..+......-+.++|+.+.+.=.
T Consensus       500 ~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E~~~  577 (866)
T KOG1062|consen  500 GANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVEYNA  577 (866)
T ss_pred             CccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence                    11234555555555432  33678999999998888777543  2344444445555667777877776433

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=5.3e-07  Score=90.52  Aligned_cols=148  Identities=14%  Similarity=0.099  Sum_probs=107.1

Q ss_pred             HHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc--------CCChHHHHHHHHHHHHHHhhhChhh-----HHHHHHHHH
Q 009632          375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGVGF-----FDDKLGALC  441 (530)
Q Consensus       375 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~R~~~~~~l~~l~~~~~~~~-----~~~~~~~~l  441 (530)
                      +.+|...+-.++..-|.+.+ +.+++.+.+.+.        ..+++-...|+..++.++..+.+..     +...+.+++
T Consensus       389 ~~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV  467 (1010)
T KOG1991|consen  389 DTAALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV  467 (1010)
T ss_pred             cHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence            45666677777766665554 456666655544        2367888899999999998775432     334567777


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHH-HHhChhHHhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHH
Q 009632          442 MQWLQDKVYSIRDAAANNLKRLA-EEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS--EITCSRLLP  517 (530)
Q Consensus       442 ~~~l~d~~~~Vr~~a~~~l~~l~-~~~~~~~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p  517 (530)
                      +..+.++.--.|..||..++.++ ..+.......+++....+++. |++..||..|+-|+..++.+...  +.+.+++-|
T Consensus       468 fP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~  547 (1010)
T KOG1991|consen  468 FPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPP  547 (1010)
T ss_pred             hHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence            77889999999999999999998 555555445667777777666 89999999999999999887653  335666666


Q ss_pred             HHHhhc
Q 009632          518 VVINAS  523 (530)
Q Consensus       518 ~l~~~l  523 (530)
                      .+.+++
T Consensus       548 ~mq~lL  553 (1010)
T KOG1991|consen  548 IMQELL  553 (1010)
T ss_pred             HHHHHH
Confidence            666554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=1.7e-08  Score=98.62  Aligned_cols=406  Identities=14%  Similarity=0.104  Sum_probs=246.6

Q ss_pred             hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHH
Q 009632           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL  164 (530)
Q Consensus        85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l  164 (530)
                      ..++|-+....+..+-..++..---+..-++..+...  ...++.+..=++|++|..|..|.+..+.+--   +...+.+
T Consensus        48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a--~~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~  122 (734)
T KOG1061|consen   48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA--ILAVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITEYL  122 (734)
T ss_pred             HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH--HhhhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHHHH
Confidence            3333333333333446777766666666666554432  2244555555677889999988887765431   2466778


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  244 (530)
                      ...+...++|.++.||+.++-+...+...-+.-.....+++.+..++.|+++.|-..|+.++..+.+.-.........-+
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~  202 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQ  202 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHH
Confidence            88889999999999999999999888765444445567889999999999999999999999999876543222222223


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HHHHhhhh
Q 009632          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHIL  321 (530)
Q Consensus       245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~  321 (530)
                      .+..++..-+...-..-+..+..++....++. -...++..+...+.+.++.|..++.+.+-........  +.+...+-
T Consensus       203 ~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~  282 (734)
T KOG1061|consen  203 LINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVA  282 (734)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333332222222223334455555555443 2235666677777888888888888888777766544  22334444


Q ss_pred             HhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHH
Q 009632          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (530)
Q Consensus       322 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  401 (530)
                      |-+..++.... .+...++..+..+....+. .+...+.- ++--.+|+ -.|+..=++.+..+..    +...++++.-
T Consensus       283 ~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~~~~-Ff~kynDP-iYvK~eKleil~~la~----~~nl~qvl~E  354 (734)
T KOG1061|consen  283 PPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVEIKV-FFCKYNDP-IYVKLEKLEILIELAN----DANLAQVLAE  354 (734)
T ss_pred             ccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhHhHe-eeeecCCc-hhhHHHHHHHHHHHhh----HhHHHHHHHH
Confidence            44444444333 6777777776666554442 22222211 11112232 2344443343333322    1222457777


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHH
Q 009632          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  481 (530)
Q Consensus       402 l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~  481 (530)
                      +..+..+-+...-..++.+++.++-.....   +..++.++.++.-+..-|...++..+..+.+.+.+..  +.+++.+-
T Consensus       355 l~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~  429 (734)
T KOG1061|consen  355 LKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILC  429 (734)
T ss_pred             HHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhc
Confidence            777777777777778888888887665544   5677778888777777777777777777777765432  34444444


Q ss_pred             hhccC-CChHHHHHHHHHHHHHhhhcCh
Q 009632          482 EMINN-PHYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       482 ~~~~d-~~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      ..... .+++-|.+.+|.+|..++.++.
T Consensus       430 ~~~~sl~epeak~amiWilg~y~~~i~~  457 (734)
T KOG1061|consen  430 ENLDSLQEPEAKAALIWILGEYAERIEN  457 (734)
T ss_pred             ccccccCChHHHHHHHHHHhhhhhccCc
Confidence            43332 3455666666777766666553

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.20  E-value=1.7e-09  Score=96.38  Aligned_cols=196  Identities=19%  Similarity=0.135  Sum_probs=134.8

Q ss_pred             hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHH
Q 009632           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL  164 (530)
Q Consensus        85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l  164 (530)
                      ..+...|...-++.+|..|..|+..+..++....+......+.+.+                               ..+
T Consensus         6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l-------------------------------~~~   54 (228)
T PF12348_consen    6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECL-------------------------------RQL   54 (228)
T ss_dssp             GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHH-------------------------------H--
T ss_pred             HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHH-------------------------------HHh
Confidence            3444555555567889999999999999887652211111122222                               224


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhcc
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  242 (530)
                      +..+...+.|....|-+.|+..+..++..++..  .+.+.++|.+.+.+.|....+|..|..++..+.+.++.   ...+
T Consensus        55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~  131 (228)
T PF12348_consen   55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKI  131 (228)
T ss_dssp             -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHH
Confidence            456667777888889999999999999998874  45677999999999999999999999999999998871   1224


Q ss_pred             -HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---Cccc----ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 009632          243 -LPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE  314 (530)
Q Consensus       243 -~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  314 (530)
                       .+.+....+++++.+|..++..+..+....+   ....    .+.+.+.+..++.|.+++||.+|-.++..+...+|..
T Consensus       132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence             7888889999999999999999999988877   1111    2568899999999999999999999999998887765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=2.4e-08  Score=95.22  Aligned_cols=213  Identities=16%  Similarity=0.179  Sum_probs=147.2

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC-H------
Q 009632          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K------  352 (530)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~------  352 (530)
                      .++..+..+..|.++.||.+|++++-.+.+.+.-   .+.+.....+.+.|.+..||.++++.+..+++.++ +      
T Consensus       198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            4555566777788888888888887777763322   24455566667778888888888877777766551 1      


Q ss_pred             -HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHH----hh------------------------------
Q 009632          353 -DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS----QS------------------------------  397 (530)
Q Consensus       353 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~------------------------------  397 (530)
                       ....+..+.-+...+.|.+..||..|.+++|.+...-. +.+.    ++                              
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~  353 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW  353 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence             12344455556677788888888888888877754321 1111    11                              


Q ss_pred             ---------------HHH-----HHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHH
Q 009632          398 ---------------LLP-----AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA  457 (530)
Q Consensus       398 ---------------l~~-----~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~  457 (530)
                                     ++|     .++.-+.|..+.||.+|+..+..++..  ...|...-+.++...++|....||..|+
T Consensus       354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s--sP~FA~~aldfLvDMfNDE~~~VRL~ai  431 (823)
T KOG2259|consen  354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS--SPGFAVRALDFLVDMFNDEIEVVRLKAI  431 (823)
T ss_pred             cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccHHHHHHHHHH
Confidence                           111     122234555678999999999998753  3345666788888999999999999999


Q ss_pred             HHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632          458 NNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL  501 (530)
Q Consensus       458 ~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~  501 (530)
                      .+|..|.....   ..++.++.+...+.|.+.++|++.-..++.
T Consensus       432 ~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  432 FALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99998887743   446788888888999999999987777664

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=2e-06  Score=88.29  Aligned_cols=473  Identities=17%  Similarity=0.125  Sum_probs=276.3

Q ss_pred             HHHHHHhhChHhhhhcccccccc---cc-CCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHH
Q 009632           33 LSTIARALGEERTRKELIPFLSE---NN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVE  108 (530)
Q Consensus        33 l~~~~~~~~~~~~~~~l~~~l~~---~~-d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~  108 (530)
                      +..+-+.+|+ .-..++.|.|..   +. +++..-+...-.++|..+..+| ++..-.++|+=  +..+.....|..-+.
T Consensus       374 ~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmG-Pe~vL~~lpLn--l~~~s~~~~RsWLLP  449 (1176)
T KOG1248|consen  374 LSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMG-PERVLTILPLN--LHAESLSFTRSWLLP  449 (1176)
T ss_pred             HHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhC-HHHHHHHcchh--ccccccccchhHhHH
Confidence            3333344443 233455555544   11 1222334455555665555556 33333333331  133344556666566


Q ss_pred             HHHHHHhhcChhhhhhhHHHHHHHHh------cCCcc---chhHHHHhHhhhhcCC--CChH---HHHHHHHHHHhhcCC
Q 009632          109 SLCRIGSQMRESDLVDWYIPLVKRLA------AGEWF---TARVSACGLFHIAYPS--APDI---LKTELRSIYTQLCQD  174 (530)
Q Consensus       109 ~l~~l~~~~~~~~~~~~l~~~l~~l~------~~~~~---~~r~~~~~~l~~l~~~--~~~~---~~~~l~~~l~~l~~d  174 (530)
                      .|..-...-+=..+..++.|+...+.      ++...   .++....++.+.+-..  .+-+   ....+-+.+...+.-
T Consensus       450 vLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~  529 (1176)
T KOG1248|consen  450 VLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK  529 (1176)
T ss_pred             HHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc
Confidence            66555444444445556666665553      12222   2233344444333221  1222   356777777766653


Q ss_pred             CChhHHHHHHHHHHHHHhhhcc-----------hhhHHHHHHHHHHhhc----CC--chhHHHHHHHHHHHHhhhcCchh
Q 009632          175 DMPMVRRSAASNLGKFAATVEP-----------AHLKTDIMSIFEDLTQ----DD--QDSVRLLAVEGCAALGKLLEPQD  237 (530)
Q Consensus       175 ~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~l~~~l~~~~~----d~--~~~vr~~a~~~l~~l~~~~~~~~  237 (530)
                       .++.|...|.+|..+.....+           ......++|.+.+..+    +.  ....|...++.+....-...+.+
T Consensus       530 -~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d  608 (1176)
T KOG1248|consen  530 -RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD  608 (1176)
T ss_pred             -chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH
Confidence             349999999999999886421           1122335555555443    22  22344444444442222222333


Q ss_pred             hhhccHHHHHHhcCCCCHHHH----HHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 009632          238 CVAHILPVIVNFSQDKSWRVR----YMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~~~vr----~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  313 (530)
                      ....+...+..+..+.+..++    .+....+..++....... ...+..+.-..-+...+-+++.+...|..++.....
T Consensus       609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~  687 (1176)
T KOG1248|consen  609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSG  687 (1176)
T ss_pred             HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCch
Confidence            445566666666666544333    333333333433322222 222222222222344678999999999998876222


Q ss_pred             H----HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 009632          314 E----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (530)
Q Consensus       314 ~----~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  387 (530)
                      +    .....+...+.+-.++.....|...+.++..+.+.++.+  .+....+|-++-.+++.+..-|..+...|..++.
T Consensus       688 ~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~  767 (1176)
T KOG1248|consen  688 EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA  767 (1176)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence            2    223444555555556666778888888888888877743  3456667777767799999999999999988883


Q ss_pred             --h---hchhH---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHHHHHhcCCcHHHHHHH
Q 009632          388 --V---IGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAA  456 (530)
Q Consensus       388 --~---~~~~~---~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d~~~~Vr~~a  456 (530)
                        .   .|.+.   ..+.+++.+...+-....+++..-+-++..+....+   ...+...++..+.-++....++++.+|
T Consensus       768 i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaA  847 (1176)
T KOG1248|consen  768 IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAA  847 (1176)
T ss_pred             HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence              2   23222   334555555444444455555554666666655443   344566788888889999999999999


Q ss_pred             HHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHH
Q 009632          457 ANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT  511 (530)
Q Consensus       457 ~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~  511 (530)
                      +..+..++..+.....   .+.++|.+..+..|.+..+|...-..+..++..+|.+.+
T Consensus       848 I~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL  905 (1176)
T KOG1248|consen  848 IGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL  905 (1176)
T ss_pred             HHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence            9999999988876533   367899999999998999999999999999999997654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.17  E-value=2.5e-08  Score=94.62  Aligned_cols=274  Identities=23%  Similarity=0.214  Sum_probs=181.5

Q ss_pred             HHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Q 009632          128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF  207 (530)
Q Consensus       128 ~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l  207 (530)
                      +.+.....++++.+|..+...++.+.       ....++.+..++.|.++.||..++.+++.+..        +..++.+
T Consensus        46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a~~~l  110 (335)
T COG1413          46 DELLKLLEDEDLLVRLSAAVALGELG-------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEAVPPL  110 (335)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhhc-------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhHHHHH
Confidence            33344444445555555554433222       24456677777778888888888886666532        3344555


Q ss_pred             HHhhc-CCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC------------CCHHHHHHHHHHHHHHHHHhCC
Q 009632          208 EDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD------------KSWRVRYMVANQLYELCEAVGP  274 (530)
Q Consensus       208 ~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d------------~~~~vr~~~~~~l~~l~~~~~~  274 (530)
                      .+++. |++..||..+..+++.+...-        .+..+...++|            ..+.+|..+...++.+.     
T Consensus       111 i~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-----  177 (335)
T COG1413         111 VELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-----  177 (335)
T ss_pred             HHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-----
Confidence            55555 677788888888887765432        12223333333            22468888888887775     


Q ss_pred             cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHH
Q 009632          275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA  354 (530)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  354 (530)
                         .....+.+...+.++...||..+..+++.+....      ..+.+.+.....|.+|.+|..++..++.+...     
T Consensus       178 ---~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~-----  243 (335)
T COG1413         178 ---DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGDE-----  243 (335)
T ss_pred             ---ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc-----
Confidence               3456788899999999999999999999987632      24567778888999999999999988776432     


Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH
Q 009632          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  434 (530)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~  434 (530)
                         ...+.+...+.+.++.++..+...++..-        .....+.+.....+..+.+|..+...+........     
T Consensus       244 ---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-----  307 (335)
T COG1413         244 ---EAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA-----  307 (335)
T ss_pred             ---hhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch-----
Confidence               33456777888888888877766665211        12234445566688899999999988888764322     


Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 009632          435 DKLGALCMQWLQDKVYSIRDAAANNLKR  462 (530)
Q Consensus       435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~  462 (530)
                         .........+....+|..+......
T Consensus       308 ---~~a~~~~~~~~~~~~~~~~~~~~~~  332 (335)
T COG1413         308 ---VAALLLALEDGDADVRKAALILLEG  332 (335)
T ss_pred             ---HHHHHHHhcCCchhhHHHHHHHHHh
Confidence               3344555677778888877766543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.16  E-value=1.8e-07  Score=88.03  Aligned_cols=450  Identities=13%  Similarity=0.093  Sum_probs=256.8

Q ss_pred             ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc
Q 009632           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA  135 (530)
Q Consensus        56 ~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  135 (530)
                      .+..++..|+.+..++..+...-  ++..-..-.++..+.+-.+..+|-.|++.|-.+...-.--.    +..++....-
T Consensus        74 FQhkd~~Lrq~VY~aIkelS~~t--edvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~----~er~l~~a~V  147 (898)
T COG5240          74 FQHKDLYLRQCVYSAIKELSKLT--EDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYD----FERYLNQAFV  147 (898)
T ss_pred             HhcCChHHHHHHHHHHHHHhhcc--hhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhh----HHHHhhhhcc
Confidence            56778888888887777765532  22222222233333333455788877777776654322222    2333344444


Q ss_pred             CCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcC------------CCChhHHHHHHHHHHHHHhhhcchhhH
Q 009632          136 GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ------------DDMPMVRRSAASNLGKFAATVEPAHLK  200 (530)
Q Consensus       136 ~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~------------d~~~~vR~~a~~~l~~l~~~~~~~~~~  200 (530)
                      +....+|.++.-.-..+.+.....   ..++..+.+..+-+            ..++.-++.|+..|..+-+.  +....
T Consensus       148 s~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~--dkma~  225 (898)
T COG5240         148 STSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT--DKMAQ  225 (898)
T ss_pred             ccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc--cHHHH
Confidence            455445544332222232222111   22233333333222            22444555554444333221  01111


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-CCcccc
Q 009632          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV-GPEPTR  278 (530)
Q Consensus       201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~  278 (530)
                      -.++..   +..+..-.-..+.+..+..+...+.. ..+..++.|++...++|+-..|-..+++.+..++..- +++. .
T Consensus       226 lklv~h---f~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~-~  301 (898)
T COG5240         226 LKLVEH---FRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF-V  301 (898)
T ss_pred             HHHHHH---hhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH-H
Confidence            112222   22222111222233333333333222 3456778899999999988889888998888877643 4443 3


Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHh
Q 009632          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  358 (530)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  358 (530)
                      ...+..+..+++.+....|-+|++.+.+++...+...  ...-+.+..++.|.+..+-.-++..+-..    |.+...+.
T Consensus       302 ~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~idr  375 (898)
T COG5240         302 DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAITTLLKT----GTEETIDR  375 (898)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHHHHHHHc----CchhhHHH
Confidence            5567777888888888899999999999987655432  23445566777888876666655554443    44556666


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChhhHHHHH
Q 009632          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  437 (530)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~  437 (530)
                      ++..+...+.|-+...+..+++++..++..+...+  ..++..|...+ +...+..+..++.+++.+.+..+..  .+..
T Consensus       376 Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEra  451 (898)
T COG5240         376 LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERA  451 (898)
T ss_pred             HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHH
Confidence            76777777777666677778888888888777665  35666665544 4456888888888888777654321  2334


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHH
Q 009632          438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP  517 (530)
Q Consensus       438 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p  517 (530)
                      +..+-.++.|...  -+-++..|+.+.+...........+-.+.+.+-=+|..||.+|+.++..++-........+.+..
T Consensus       452 Le~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~  529 (898)
T COG5240         452 LEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVEN  529 (898)
T ss_pred             HHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHH
Confidence            5555556666443  22333344433332211111122333344434445789999999999999988777677788889


Q ss_pred             HHHhhccCCCCC
Q 009632          518 VVINASKDRYLN  529 (530)
Q Consensus       518 ~l~~~l~D~~~~  529 (530)
                      .|.++++|.-..
T Consensus       530 ~lkRclnD~Dde  541 (898)
T COG5240         530 ALKRCLNDQDDE  541 (898)
T ss_pred             HHHHHhhcccHH
Confidence            999999987654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=1.3e-06  Score=84.62  Aligned_cols=316  Identities=16%  Similarity=0.113  Sum_probs=204.5

Q ss_pred             HHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHH
Q 009632          143 VSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLA  222 (530)
Q Consensus       143 ~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a  222 (530)
                      +.+..+++.+.+..+++...++-+-++.+++.+-|-||+.|+..+..++...+..  ....+|.+.+-+.|+++.|..+|
T Consensus       124 ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAA  201 (877)
T KOG1059|consen  124 YEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAA  201 (877)
T ss_pred             chhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHH
Confidence            3455566777777788888888888999999999999999999998887655442  34578999999999999999999


Q ss_pred             HHHHHHHhhhcCchhhhhccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhcCCCcH-HHHH
Q 009632          223 VEGCAALGKLLEPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEA-EVRI  298 (530)
Q Consensus       223 ~~~l~~l~~~~~~~~~~~~~~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~-~vr~  298 (530)
                      +..+..+++.-++. +. .+-|.+.+++.  +.+|-. --..+.++.+...   +.- -.+++|.+.++++.+.. .+-.
T Consensus       202 V~VICELArKnPkn-yL-~LAP~ffkllttSsNNWmL-IKiiKLF~aLtpl---EPRLgKKLieplt~li~sT~AmSLlY  275 (877)
T KOG1059|consen  202 VSVICELARKNPQN-YL-QLAPLFYKLLVTSSNNWVL-IKLLKLFAALTPL---EPRLGKKLIEPITELMESTVAMSLLY  275 (877)
T ss_pred             HHHHHHHHhhCCcc-cc-cccHHHHHHHhccCCCeeh-HHHHHHHhhcccc---CchhhhhhhhHHHHHHHhhHHHHHHH
Confidence            99999999886653 33 37788877764  456732 2234444444322   221 24688888888887642 2222


Q ss_pred             HHHHHHHHHHHhhC---HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHH
Q 009632          299 AAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR  375 (530)
Q Consensus       299 ~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  375 (530)
                      .++.++-...-..|   .....+-.+.-+..++.|.++..|.-.+-+++.+++....  +...-..+++.+|.|.++.+|
T Consensus       276 ECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~SIR  353 (877)
T KOG1059|consen  276 ECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK--AVQAHKDLILRCLDDKDESIR  353 (877)
T ss_pred             HHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCchhH
Confidence            22222211100112   1233455666677788999999999988888888765442  344556789999999999999


Q ss_pred             HHHHHhhHHhhhhhc----------------hhHHHhhHHHHHHHHhcCCChHHHHHH---HHHHHHHHhhhChhh----
Q 009632          376 LNIISKLDQVNQVIG----------------IDLLSQSLLPAIVELAEDRHWRVRLAI---IEYIPLLASQLGVGF----  432 (530)
Q Consensus       376 ~~a~~~l~~l~~~~~----------------~~~~~~~l~~~l~~~~~~~~~~~R~~~---~~~l~~l~~~~~~~~----  432 (530)
                      ..|+..+-.+...-.                ...+...++..+..+++-++|..-...   +..+..++...|.+.    
T Consensus       354 lrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I  433 (877)
T KOG1059|consen  354 LRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLI  433 (877)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHH
Confidence            999988877653211                123345566666666666655544333   333333433322111    


Q ss_pred             -------------HHHHHHHHHHHHhcCC-----------cHHHHHHHHHHHHHHHHHhC
Q 009632          433 -------------FDDKLGALCMQWLQDK-----------VYSIRDAAANNLKRLAEEFG  468 (530)
Q Consensus       433 -------------~~~~~~~~l~~~l~d~-----------~~~Vr~~a~~~l~~l~~~~~  468 (530)
                                   ..+..+..+..++.|+           ...|-.+|+.++|...+...
T Consensus       434 ~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ve  493 (877)
T KOG1059|consen  434 AEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVE  493 (877)
T ss_pred             HHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhh
Confidence                         1122333444455544           45677788889888887664

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=1.3e-07  Score=92.34  Aligned_cols=457  Identities=12%  Similarity=0.101  Sum_probs=258.7

Q ss_pred             HHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc----ccCCchHHHHHHHHHHhcccccCCCccchhcch
Q 009632           13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE----NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (530)
Q Consensus        13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~----~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~   88 (530)
                      .+....++.|...|+....++++++..-      ++.+-..+.    ....++..|..|.+.|..+..  +  .....+-
T Consensus        68 ~~tKlfQskd~~LRr~vYl~Ikels~is------edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d--~--~m~~~ie  137 (865)
T KOG1078|consen   68 AITKLFQSKDVSLRRMVYLAIKELSKIS------EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIID--G--TMLQAIE  137 (865)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHhhccccc------hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcC--c--chhHHHH
Confidence            3455567888888888777777664321      122222222    233455677777777766654  1  2233444


Q ss_pred             hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHH
Q 009632           89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (530)
Q Consensus        89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l  168 (530)
                      ..+.+..-|+.+.++..|+-.=-.+...- .+.... ...-+.....+++.-+++++..++..+-++-.-. ...++..+
T Consensus       138 ry~kqaivd~~~avSsaalvss~hll~~~-~~~vkr-w~neiqea~~s~~~m~QyHalglLyqirk~drla-~sklv~~~  214 (865)
T KOG1078|consen  138 RYMKQAIVDKNPAVSSAALVSSYHLLPIS-FDVVKR-WANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLA-VSKLVQKF  214 (865)
T ss_pred             HHHHhHeeccccccchHHHHHHhhhhccc-HHHHHH-HHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHH
Confidence            55666667777777777643222222211 111111 1122222233333345666666665554321111 11111111


Q ss_pred             Hh-hcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHH
Q 009632          169 TQ-LCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI  246 (530)
Q Consensus       169 ~~-l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  246 (530)
                      .. .+.++  -   +-+..+...++.+.+ ......+++.+...+.+..+.|-..|..++..+....+.+  ....+..+
T Consensus       215 ~~~~~~~~--~---A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~--l~pavs~L  287 (865)
T KOG1078|consen  215 TRGSLKSP--L---AVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE--LAPAVSVL  287 (865)
T ss_pred             ccccccch--h---HHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh--cchHHHHH
Confidence            11 11111  1   111111111222211 2234567888888888888888888888887776655432  22256667


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhH
Q 009632          247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (530)
Q Consensus       247 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~  326 (530)
                      ..+++.+....|.++...|.+++...+.....  .-.-+..++.|.+-   ..+..++..+.+. |.+.-...++..+..
T Consensus       288 q~flssp~~~lRfaAvRtLnkvAm~~P~~v~~--cN~elE~lItd~Nr---sIat~AITtLLKT-G~e~sv~rLm~qI~~  361 (865)
T KOG1078|consen  288 QLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV--CNLDLESLITDSNR---SIATLAITTLLKT-GTESSVDRLMKQISS  361 (865)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHhCCccccc--cchhHHhhhccccc---chhHHHHHHHHHh-cchhHHHHHHHHHHH
Confidence            77889999999999999999999876654321  12334556677663   4444455555443 333223555666666


Q ss_pred             hccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC-CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHH
Q 009632          327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  405 (530)
Q Consensus       327 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  405 (530)
                      ++.|-+..-+..+.+.+..++..++..  ...+++++.++|++ +..+-+.+.++++..++.....  ..+..+..|+++
T Consensus       362 fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd--sKe~~L~~LCef  437 (865)
T KOG1078|consen  362 FVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD--SKERGLEHLCEF  437 (865)
T ss_pred             HHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHH
Confidence            666555555666666666666655533  23456667776654 4567777888887777664322  124556667777


Q ss_pred             hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhcc
Q 009632          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN  485 (530)
Q Consensus       406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~  485 (530)
                      +.|..  .+..+...++.++............+..+.+...=.+.-||.+|..++..+.  .+.......+...+.++++
T Consensus       438 IEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~  513 (865)
T KOG1078|consen  438 IEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLN  513 (865)
T ss_pred             HHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhc
Confidence            66643  3455556666665543332223334444445444456778999999988887  3444445677778888899


Q ss_pred             CCChHHHHHHHHHHHHHh
Q 009632          486 NPHYLYRMTILRAISLLA  503 (530)
Q Consensus       486 d~~~~vr~~a~~~l~~i~  503 (530)
                      |++..||..|-.++..+-
T Consensus       514 D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  514 DSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             CchHHHHHHHHHHHHHhh
Confidence            999999998888888775

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.14  E-value=4.5e-09  Score=93.72  Aligned_cols=186  Identities=21%  Similarity=0.260  Sum_probs=121.8

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HH---HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--
Q 009632          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--  352 (530)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--  352 (530)
                      .+.|...-.+.+|+.|..++..+..++..-...    .+   ...+.+.+...+.|....+-..++..+..++..++.  
T Consensus         9 ~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~   88 (228)
T PF12348_consen    9 LAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF   88 (228)
T ss_dssp             -TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Confidence            333333345566777777777666666544111    11   122334455556666667788888888888877765  


Q ss_pred             HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhH-HHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--
Q 009632          353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL-LPAIVELAEDRHWRVRLAIIEYIPLLASQLG--  429 (530)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l-~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--  429 (530)
                      +.+.+.++|.++..+.|....+|..|..++..++...+.   ...+ .+.+....+++++.+|..++.++..+....+  
T Consensus        89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~  165 (228)
T PF12348_consen   89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD  165 (228)
T ss_dssp             HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence            346788999999999999999999999999999987761   1234 6777778899999999999999999988887  


Q ss_pred             hhh-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632          430 VGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (530)
Q Consensus       430 ~~~-----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  470 (530)
                      ...     ..+.+.+.+.+++.|++++||..|-.++..+.+.+|..
T Consensus       166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            121     23568899999999999999999999999998888755

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>TIGR02270 conserved hypothetical protein

Probab=99.13  E-value=2e-08  Score=95.36  Aligned_cols=241  Identities=15%  Similarity=0.046  Sum_probs=153.0

Q ss_pred             HHHHHHhhc-CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhcc
Q 009632          164 LRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (530)
Q Consensus       164 l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  242 (530)
                      .++.+...+ .|+++.++..++.++...-.        ...+..+.+.+.|.++.||..++++|+.+.        ....
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a  118 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQA  118 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHH
Confidence            344455555 46777777766655543211        223667777788888888888888887543        2335


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhH
Q 009632          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP  322 (530)
Q Consensus       243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~  322 (530)
                      .+.+..++++.++.||..++..++...         ..-.+.+...++|+++.||..|+.+++.+..        ....|
T Consensus       119 ~~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~  181 (410)
T TIGR02270       119 EPWLEPLLAASEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSES  181 (410)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence            666777778888888887776665521         1124566777788888888888888887754        23445


Q ss_pred             hHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHH
Q 009632          323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  402 (530)
Q Consensus       323 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  402 (530)
                      .+.....|.++.||..++..+..+..    .    ..++.+.....+....++..+...+...    |.    +..++.|
T Consensus       182 ~L~~al~d~~~~VR~aA~~al~~lG~----~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L  245 (410)
T TIGR02270       182 TLRLYLRDSDPEVRFAALEAGLLAGS----R----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL  245 (410)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcCC----H----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence            55566778888888888887766532    1    1223344433444444444444444332    22    3567777


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632          403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  465 (530)
                      ..++++++  +|..++.+++.+..        ...++.++..+.|+.  +|..|.+++..|..
T Consensus       246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence            77777765  88888888887642        235677777777654  88888888877763

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>TIGR02270 conserved hypothetical protein

Probab=99.10  E-value=4.3e-08  Score=93.07  Aligned_cols=231  Identities=14%  Similarity=0.025  Sum_probs=164.3

Q ss_pred             cCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q 009632          135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD  214 (530)
Q Consensus       135 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~  214 (530)
                      .+++..++..+...+.....       ...+..+...+.|.++.||..++++|+.+-.        +...+.+..++.++
T Consensus        65 ~d~~~ev~~~aa~al~~~~~-------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~~~L~~~L~~~  129 (410)
T TIGR02270        65 EADEPGRVACAALALLAQED-------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAEPWLEPLLAAS  129 (410)
T ss_pred             hCCChhHHHHHHHHHhccCC-------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHHHHHHHHhcCC
Confidence            55666666655444432111       1236777888889999999999999987533        45677888889999


Q ss_pred             chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 009632          215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA  294 (530)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  294 (530)
                      ++.||..++.+++...         ..-.+.+..+++|.++.||..++.+++.+..        ....|.+...+.|.++
T Consensus       130 ~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~  192 (410)
T TIGR02270       130 EPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDP  192 (410)
T ss_pred             ChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCH
Confidence            9999999988777622         1134667778889999999999999998863        3556778888999999


Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHH
Q 009632          295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV  374 (530)
Q Consensus       295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  374 (530)
                      +||.+|+.++..+..    .    .-.+.+..+..+..+..+..+...+...    |..    ..++.+..+++|+.  +
T Consensus       193 ~VR~aA~~al~~lG~----~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~~----~a~~~L~~ll~d~~--v  254 (410)
T TIGR02270       193 EVRFAALEAGLLAGS----R----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GGP----DAQAWLRELLQAAA--T  254 (410)
T ss_pred             HHHHHHHHHHHHcCC----H----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cch----hHHHHHHHHhcChh--h
Confidence            999999999977743    2    1123333333445544544444444333    222    56778888888865  9


Q ss_pred             HHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 009632          375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (530)
Q Consensus       375 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~  425 (530)
                      |..++.+++.+..        ...++.+...+.++.  +|..|-+++..+.
T Consensus       255 r~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       255 RREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             HHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence            9999999988654        457778888877765  7888888888875

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.09  E-value=9.5e-10  Score=106.09  Aligned_cols=255  Identities=18%  Similarity=0.166  Sum_probs=209.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccC
Q 009632          251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD  330 (530)
Q Consensus       251 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d  330 (530)
                      .-++..-|......|....+.+.++.....++|.++..+.-.+  --...+..+-.+...+....+...++|.+.++...
T Consensus       264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~  341 (690)
T KOG1243|consen  264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS  341 (690)
T ss_pred             ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence            3345666777777777777777777777788888887765433  12223334444555555556778899999999999


Q ss_pred             CcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCC
Q 009632          331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH  410 (530)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~  410 (530)
                      .+..+|...++.+..++..+.+..+.+++.|.+...+.|.++.+|+.++..+..++..++......+++..+.++..|.+
T Consensus       342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~  421 (690)
T KOG1243|consen  342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH  421 (690)
T ss_pred             cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999988777889999998888999


Q ss_pred             hHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChH
Q 009632          411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL  490 (530)
Q Consensus       411 ~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~  490 (530)
                      ..+|....-+++.++..+.+......+.-.+.+.+.|+...-|.++...+....+.+........++|.+..+.-|++..
T Consensus       422 ~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~  501 (690)
T KOG1243|consen  422 GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKT  501 (690)
T ss_pred             CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccc
Confidence            99999999999999887765543333444556678999999999999999988888877777788999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcC
Q 009632          491 YRMTILRAISLLAPVMG  507 (530)
Q Consensus       491 vr~~a~~~l~~i~~~~~  507 (530)
                      +|..+..++..+.+.+.
T Consensus       502 vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  502 VRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             hhhHHHHHHHHHHhhhh
Confidence            99999999998876554

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.06  E-value=4e-09  Score=101.88  Aligned_cols=254  Identities=15%  Similarity=0.169  Sum_probs=196.5

Q ss_pred             cCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC
Q 009632          172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ  251 (530)
Q Consensus       172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~  251 (530)
                      +.-.+..-|......|......++.+.....++|.+...+.-.+  --...+..+-.++..+..+.|...++|.+.++++
T Consensus       263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~  340 (690)
T KOG1243|consen  263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK  340 (690)
T ss_pred             cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence            44566777888888888888888888888889998887665443  1122344455566666667788889999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCC
Q 009632          252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS  331 (530)
Q Consensus       252 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~  331 (530)
                      ..+..+|...++.+..++..+.++.....++|.+...+.|+++.+|...++++..++..++...+-..++.++..+..|.
T Consensus       341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~  420 (690)
T KOG1243|consen  341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE  420 (690)
T ss_pred             CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence            99999999999999999999988888889999999999999999999999999999999888866677888887777788


Q ss_pred             cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCCh
Q 009632          332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW  411 (530)
Q Consensus       332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~  411 (530)
                      +..+|....-+++.++.......-...+.-.+...++|+...-|.++...+....+.+....+...|+|.+.-+..|++.
T Consensus       421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~  500 (690)
T KOG1243|consen  421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK  500 (690)
T ss_pred             cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence            88888777777777776654333222222334446788888888888888888877777777777888888888888888


Q ss_pred             HHHHHHHHHHHHHHhh
Q 009632          412 RVRLAIIEYIPLLASQ  427 (530)
Q Consensus       412 ~~R~~~~~~l~~l~~~  427 (530)
                      .+|..+...+......
T Consensus       501 ~vr~~a~~~i~~fl~k  516 (690)
T KOG1243|consen  501 TVRDTAEKAIRQFLEK  516 (690)
T ss_pred             chhhHHHHHHHHHHhh
Confidence            8888877777665443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=7.7e-06  Score=79.23  Aligned_cols=437  Identities=12%  Similarity=0.113  Sum_probs=229.8

Q ss_pred             hhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhh--cccchHHHHHHHHHHHHHHhhcChhh
Q 009632           45 TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC--TVEETCVRDKAVESLCRIGSQMRESD  121 (530)
Q Consensus        45 ~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~~~  121 (530)
                      ..+.++..++. +.+.|+.....|-.+++++    |+.+....+.+-+..++  .+..+.||+.|+-|+-.+.+..++-.
T Consensus       108 l~klvin~iknDL~srn~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~  183 (938)
T KOG1077|consen  108 LMKLVINSIKNDLSSRNPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV  183 (938)
T ss_pred             HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc
Confidence            33344444544 5566666666666777776    55565555555555554  34578899999999999999866544


Q ss_pred             hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhh---cC----C---------CChhHHHHHHH
Q 009632          122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL---CQ----D---------DMPMVRRSAAS  185 (530)
Q Consensus       122 ~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l---~~----d---------~~~~vR~~a~~  185 (530)
                      -.+....-+..+++|.+-.+-.++..++..++++-+++++.-+.+.+..+   +.    |         +.|...-.++.
T Consensus       184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~r  263 (938)
T KOG1077|consen  184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLR  263 (938)
T ss_pred             ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHH
Confidence            34455666777778877777788888888888888777554333333222   11    1         23444444444


Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHhhcCCc----------hhHHHHHHHHHHHHhhhcCc-hhhhhccHHHHHHhcCCCC
Q 009632          186 NLGKFAATVEPAHLKTDIMSIFEDLTQDDQ----------DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKS  254 (530)
Q Consensus       186 ~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~----------~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~  254 (530)
                      .|..+ ..-.+......+...+..+++-.+          ...+.+.+--..+++-++.+ ..........+..++++++
T Consensus       264 lLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE  342 (938)
T KOG1077|consen  264 LLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRE  342 (938)
T ss_pred             HHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccc
Confidence            44433 100011111222222222222111          11222222222333444433 3344445666667788888


Q ss_pred             HHHHHHHHHHHHHHHHHhC-CcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCc
Q 009632          255 WRVRYMVANQLYELCEAVG-PEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS  332 (530)
Q Consensus       255 ~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~  332 (530)
                      ..+|..+.+.+..++..-. .+....+ ...++..++ +.+-.+|..|+..|-.+|..-..+.+...++.++    ...+
T Consensus       343 ~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL----~tAd  417 (938)
T KOG1077|consen  343 TNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL----ETAD  417 (938)
T ss_pred             ccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH----hhcc
Confidence            8899988888888776511 1111222 455666666 8888999999999999988766655555555555    4467


Q ss_pred             HHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhc-hhHHHhhHHHHHHHHhcC
Q 009632          333 QHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAED  408 (530)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~~  408 (530)
                      +.+|+.++--+.-+++.+..+  .+.+.++. ++..-.|- +.+|-...       ++... .+.+...-...+.+.+..
T Consensus       418 ~sireeivlKvAILaEKyAtDy~WyVdviLq-Liriagd~vsdeVW~Rv-------vQiVvNnedlq~yaak~~fe~Lq~  489 (938)
T KOG1077|consen  418 YSIREEIVLKVAILAEKYATDYSWYVDVILQ-LIRIAGDYVSDEVWYRV-------VQIVVNNEDLQGYAAKRLFEYLQK  489 (938)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHhcccccHHHHHHh-------heeEecchhhhHHHHHHHHHHHhh
Confidence            788887777777676655432  12222222 11222221 12222222       11111 122222233333333333


Q ss_pred             CC--hHHHHHHHHHHHHHHhhhCh--hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc
Q 009632          409 RH--WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI  484 (530)
Q Consensus       409 ~~--~~~R~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~  484 (530)
                      +.  ..+-..+-..+|..+.....  ..-....+..+.+-+.-..+.-|...+.++-.++..+. + ....+...+....
T Consensus       490 ~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P-E-i~~~v~~vFq~~~  567 (938)
T KOG1077|consen  490 PACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP-E-IKSNVQKVFQLYS  567 (938)
T ss_pred             hHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh-h-hhHHHHHHHHhhc
Confidence            21  12222233333433333221  11122334444444444445556666666666555442 2 2234444455555


Q ss_pred             cCCChHHHHHHHHHHHH
Q 009632          485 NNPHYLYRMTILRAISL  501 (530)
Q Consensus       485 ~d~~~~vr~~a~~~l~~  501 (530)
                      +-.|.++++.|++.+.-
T Consensus       568 n~~D~ElQqRa~EYLql  584 (938)
T KOG1077|consen  568 NLIDVELQQRAVEYLQL  584 (938)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            56788888888887763

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=5.2e-06  Score=81.68  Aligned_cols=362  Identities=12%  Similarity=0.104  Sum_probs=191.7

Q ss_pred             ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchh
Q 009632          138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS  217 (530)
Q Consensus       138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~  217 (530)
                      +...++..+.+++.+..-++++...++.|.+.++++.+++.||+.|+.+...+....+.  ..+.+++...+++.+.+.-
T Consensus       117 ~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ek~hG  194 (866)
T KOG1062|consen  117 NSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLCEKHHG  194 (866)
T ss_pred             cCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHhhcCCc
Confidence            44455556666666666667777777777777777777777777777777777765544  2345555555555555544


Q ss_pred             HHHHHHHHHHHHhhhcCc-----hhhhhccHHHH-----------------------------HHhcCCCCHHHHHHHHH
Q 009632          218 VRLLAVEGCAALGKLLEP-----QDCVAHILPVI-----------------------------VNFSQDKSWRVRYMVAN  263 (530)
Q Consensus       218 vr~~a~~~l~~l~~~~~~-----~~~~~~~~~~l-----------------------------~~~~~d~~~~vr~~~~~  263 (530)
                      |-..++..+..+++.-+.     ....+.++..+                             ..++...+.+.......
T Consensus       195 VL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D  274 (866)
T KOG1062|consen  195 VLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND  274 (866)
T ss_pred             eeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            444444444444333111     00011111111                             11223333444444555


Q ss_pred             HHHHHHHHhCC--cccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHH-----------------HHHhhhhHh
Q 009632          264 QLYELCEAVGP--EPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPE-----------------LAIQHILPC  323 (530)
Q Consensus       264 ~l~~l~~~~~~--~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-----------------~~~~~l~~~  323 (530)
                      .|++++.....  ..+...+...+...+ -++++..|..|+..|+.|...-+.+                 ...+.=-..
T Consensus       275 iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~t  354 (866)
T KOG1062|consen  275 ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRST  354 (866)
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHH
Confidence            55555543211  111111222222221 2445677777777777776532211                 111222344


Q ss_pred             HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (530)
Q Consensus       324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  403 (530)
                      +.+.++|++..+|..+++..-.+...-.-....++++    ..|...+++.|...+..+..+++.+.++.  ...+..+.
T Consensus       355 IleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl----~fL~~~d~~~k~~~as~I~~laEkfaP~k--~W~idtml  428 (866)
T KOG1062|consen  355 ILECLKDPDVSIKRRALELSYALVNESNVRVMVKELL----EFLESSDEDFKADIASKIAELAEKFAPDK--RWHIDTML  428 (866)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHH----HHHHhccHHHHHHHHHHHHHHHHhcCCcc--hhHHHHHH
Confidence            5667789999999999998888776554444444444    44444578888888888888888887652  22333444


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHh-hhChhh---HHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHhCh--------h
Q 009632          404 ELAEDRHWRVRLAIIEYIPLLAS-QLGVGF---FDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGP--------E  470 (530)
Q Consensus       404 ~~~~~~~~~~R~~~~~~l~~l~~-~~~~~~---~~~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~~~--------~  470 (530)
                      +.++....-+|...+..+-.+.. .++...   +.....-.... ++.-.....-..|.+|+|+....+-.        .
T Consensus       429 ~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~  508 (866)
T KOG1062|consen  429 KVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIK  508 (866)
T ss_pred             HHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCc
Confidence            44444333344444444443332 223221   11111111111 11123344577788899887644311        1


Q ss_pred             HHhhhhHHHHHhhccC--CChHHHHHHHHHHHHHhhhcC
Q 009632          471 WAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       471 ~~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      ....+++..+.+.+..  .+..++..|+.|+.++...+.
T Consensus       509 vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~  547 (866)
T KOG1062|consen  509 VTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH  547 (866)
T ss_pred             CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence            1235667777766543  457788999999888876554

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=2.5e-06  Score=82.75  Aligned_cols=394  Identities=12%  Similarity=0.098  Sum_probs=219.1

Q ss_pred             ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHH
Q 009632           81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL  160 (530)
Q Consensus        81 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~  160 (530)
                      +...-.+.+-+..++++.-+.+|..|+-.+-+++-..++.  ..-..|.+.+-+.|+++.|..+|...+++++.+-+..+
T Consensus       139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence            4444556666777888999999999999888887766542  23356777777889999999999999999998877655


Q ss_pred             HHHHHHHHHhhcCC--CChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh---cC-
Q 009632          161 KTELRSIYTQLCQD--DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL---LE-  234 (530)
Q Consensus       161 ~~~l~~~l~~l~~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~---~~-  234 (530)
                      .+ +-|.|.+++.+  .+| +-...++.++++...  .+.....+++.+.+++.....  ...-.+++..+...   .| 
T Consensus       217 L~-LAP~ffkllttSsNNW-mLIKiiKLF~aLtpl--EPRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~  290 (877)
T KOG1059|consen  217 LQ-LAPLFYKLLVTSSNNW-VLIKLLKLFAALTPL--EPRLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGM  290 (877)
T ss_pred             cc-ccHHHHHHHhccCCCe-ehHHHHHHHhhcccc--CchhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCC
Confidence            43 55666665543  344 333344444444332  133445677777777765432  11222333333222   12 


Q ss_pred             -c-hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632          235 -P-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (530)
Q Consensus       235 -~-~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  312 (530)
                       . .......+.-+..++.|.++..|.-.+-+++.++....+..  ..--..+++++.|.++.+|..|+..+..+...-.
T Consensus       291 ~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN  368 (877)
T KOG1059|consen  291 SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRALDLLYGMVSKKN  368 (877)
T ss_pred             CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhh
Confidence             1 11233456667778999999999999999999987654332  3345678899999999999999988887765322


Q ss_pred             HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhc---------------C---CC
Q 009632          313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLK---------------D---EF  371 (530)
Q Consensus       313 ~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~---------------d---~~  371 (530)
                      ...+...++..+.   .......|...+..+-.+|+.-...   .|. -.+.++..+.+               |   ..
T Consensus       369 l~eIVk~LM~~~~---~ae~t~yrdell~~II~iCS~snY~~ItdFE-WYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV  444 (877)
T KOG1059|consen  369 LMEIVKTLMKHVE---KAEGTNYRDELLTRIISICSQSNYQYITDFE-WYLSVLVELARLEGTRHGSLIAEQIIDVAIRV  444 (877)
T ss_pred             HHHHHHHHHHHHH---hccchhHHHHHHHHHHHHhhhhhhhhhhhHH-HHHHHHHHHHhccccchhhHHHHHHHHHheec
Confidence            2222222222221   1122255666665555555432211   110 01111211111               0   12


Q ss_pred             hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH-HHhcCC-ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC--
Q 009632          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV-ELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--  447 (530)
Q Consensus       372 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~-~~~~~~-~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d--  447 (530)
                      +.+|..++..+..+...           |.+. ....+. -..+-.+|++++|..+..+...   ..++..+.+--.|  
T Consensus       445 ~~iR~fsV~~m~~Ll~~-----------~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr~~~l  510 (877)
T KOG1059|consen  445 PSIRPFSVSQMSALLDD-----------PLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPRSDLL  510 (877)
T ss_pred             hhhhHhHHHHHHHHHhc-----------hhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCccccC
Confidence            22333333322222110           0000 001111 3567788999999988766532   1233333322221  


Q ss_pred             --CcHHH-HHHHHHHHHHHHHHhChhHH-------hhhhHHHHHhhccCCChHHHHHHHHHHHHH
Q 009632          448 --KVYSI-RDAAANNLKRLAEEFGPEWA-------MQHITPQVLEMINNPHYLYRMTILRAISLL  502 (530)
Q Consensus       448 --~~~~V-r~~a~~~l~~l~~~~~~~~~-------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i  502 (530)
                        ....| -.++.+.++.++....+.+.       .+.++..+.++....+.+|++.|..++.-+
T Consensus       511 p~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li  575 (877)
T KOG1059|consen  511 PGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELI  575 (877)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Confidence              11111 23334444444444433321       244566666667788999999976666544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.4e-05  Score=79.01  Aligned_cols=415  Identities=14%  Similarity=0.063  Sum_probs=232.5

Q ss_pred             cChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-c-cCCc-hHHHHHHHHHHhcccc-cCCCc-----------cc
Q 009632           19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N-NDDD-DEVLLAMAEELGVFIP-YVGGV-----------EH   83 (530)
Q Consensus        19 ~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~-~d~~-~~vr~~~~~~l~~~~~-~~~~~-----------~~   83 (530)
                      -+.|+..|..|...|.++-..       ..+++.+.+ + .|.. ..||++++..+.+... .....           +-
T Consensus        14 ~d~d~~~R~~AE~~L~q~~K~-------pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~d   86 (1010)
T KOG1991|consen   14 IDSDAKERKAAEQQLNQLEKQ-------PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEED   86 (1010)
T ss_pred             cCCChHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHH
Confidence            355699999999988765322       233444444 3 3333 3579999999976543 22211           11


Q ss_pred             hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCC-----Ch
Q 009632           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA-----PD  158 (530)
Q Consensus        84 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~-----~~  158 (530)
                      ...+-.-+..........+|-.-..++..|.+.--+ ..+..+.+.+..++++.+...-+.+..++..+++.-     .+
T Consensus        87 k~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~ee  165 (1010)
T KOG1991|consen   87 KAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEE  165 (1010)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccc
Confidence            122222222222233677888888888888776444 445668899999999888777778888887775421     11


Q ss_pred             ---------HHHHHHHHHHHhhcCCCChh---HHHHHHHHHHHHHhhh-cchhhH----HHHHHHHHHhhc---------
Q 009632          159 ---------ILKTELRSIYTQLCQDDMPM---VRRSAASNLGKFAATV-EPAHLK----TDIMSIFEDLTQ---------  212 (530)
Q Consensus       159 ---------~~~~~l~~~l~~l~~d~~~~---vR~~a~~~l~~l~~~~-~~~~~~----~~l~~~l~~~~~---------  212 (530)
                               ...+.++..+..++.+++..   ..+..++.+..++.+- |.+...    ...+.++...++         
T Consensus       166 R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~  245 (1010)
T KOG1991|consen  166 RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLS  245 (1010)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhccc
Confidence                     12344555555666666543   4445555554544432 222222    222333333332         


Q ss_pred             -CC-------chhHHHHHHHHHHHHhhhcCchhh----------------hhccHHHHHHhcC---CC---CHHHHHHHH
Q 009632          213 -DD-------QDSVRLLAVEGCAALGKLLEPQDC----------------VAHILPVIVNFSQ---DK---SWRVRYMVA  262 (530)
Q Consensus       213 -d~-------~~~vr~~a~~~l~~l~~~~~~~~~----------------~~~~~~~l~~~~~---d~---~~~vr~~~~  262 (530)
                       |+       -...++-|+..+.++.+.+|+...                ...++..+.+.+.   ..   +++|-..+.
T Consensus       246 ~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l  325 (1010)
T KOG1991|consen  246 LDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLL  325 (1010)
T ss_pred             CChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence             11       124678899999999888775211                1112222222111   11   223333333


Q ss_pred             HHHHHHHHHhCCcccccchHHHH--------HHhc--CC---------CcHHH-------------HHHHHHHHHHHHHh
Q 009632          263 NQLYELCEAVGPEPTRMDLVPAY--------VRLL--RD---------NEAEV-------------RIAAAGKVTKFCRI  310 (530)
Q Consensus       263 ~~l~~l~~~~~~~~~~~~l~~~l--------~~~l--~d---------~~~~v-------------r~~a~~~l~~~~~~  310 (530)
                      ..+.+...   ...+-..+-|.+        ..++  +|         +..-+             +.+|...+..++..
T Consensus       326 ~fl~~~Vs---~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K  402 (1010)
T KOG1991|consen  326 NFLEQCVS---HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK  402 (1010)
T ss_pred             HHHHHhcc---HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh
Confidence            33322211   111111111111        1111  22         22223             34666677777776


Q ss_pred             hCHHHHHhhhhHhHhHhcc--------CCcHHHHHHHHHHHHhhccccCH-----HHHHHhHHHHHHHhhcCCChHHHHH
Q 009632          311 LNPELAIQHILPCVKELSS--------DSSQHVRSALASVIMGMAPLLGK-----DATIEQLLPIFLSLLKDEFPDVRLN  377 (530)
Q Consensus       311 ~~~~~~~~~l~~~l~~~~~--------d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~  377 (530)
                      -|++.+ +.+++.+.+.++        ..+++-+.+++..++.++..+.+     ......+.++++..++++.--.|..
T Consensus       403 R~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrar  481 (1010)
T KOG1991|consen  403 RGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRAR  481 (1010)
T ss_pred             cchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHH
Confidence            666544 455555554433        35678889999999999865543     2334566788888889999999999


Q ss_pred             HHHhhHHhh-hhhchhHHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhCh--hhHHHHHHHHHHHHh
Q 009632          378 IISKLDQVN-QVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWL  445 (530)
Q Consensus       378 a~~~l~~l~-~~~~~~~~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l  445 (530)
                      |+..++.++ ..+........++....+.+. |.+-.+|..|+-++..+......  +.+..++-|.+.+++
T Consensus       482 ac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL  553 (1010)
T KOG1991|consen  482 ACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELL  553 (1010)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHH
Confidence            999999988 344444444455555555555 77889999999999988765442  224444444444443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=5.7e-05  Score=77.99  Aligned_cols=443  Identities=15%  Similarity=0.163  Sum_probs=258.2

Q ss_pred             ChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCC---ccchhcchhHHHhhhc
Q 009632           20 NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG---VEHAHVLLPPLETLCT   96 (530)
Q Consensus        20 ~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~   96 (530)
                      ++|...+..--..++....++||+.... ++|+-. ..++....|.   ..|+-+..+..+   ..|.+.++|+...+..
T Consensus       402 ~~d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpLnl-~~~s~~~~Rs---WLLPvLR~~i~~A~La~F~~~ivpla~sl~~  476 (1176)
T KOG1248|consen  402 SPDFFHKLQLDQCIGSAVRAMGPERVLT-ILPLNL-HAESLSFTRS---WLLPVLRDYIIGASLAFFTEYIVPLAMSLQL  476 (1176)
T ss_pred             CCCCccHHHHHHHHHHHHHhhCHHHHHH-Hcchhc-cccccccchh---HhHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Confidence            5666666666777788888899986643 223211 1222223332   223333332221   2356677777655431


Q ss_pred             ------ccchHHHHHHHHHHHH-HHhhcC-----hhhh---hhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCC---Ch
Q 009632           97 ------VEETCVRDKAVESLCR-IGSQMR-----ESDL---VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---PD  158 (530)
Q Consensus        97 ------d~~~~vR~~a~~~l~~-l~~~~~-----~~~~---~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~---~~  158 (530)
                            +....++  ..++|.. +...++     |-+.   ...+-|.+...+.... ..|...|..+..+....   .+
T Consensus       477 K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~  553 (1176)
T KOG1248|consen  477 KAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSD  553 (1176)
T ss_pred             HHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcch
Confidence                  1111221  2222221 222222     1111   1224444444443333 77887777777766553   11


Q ss_pred             ---------HHHHHHHHHHHhhcCCC------ChhHHHHHHHHHH-HHHhhhcchhhHHHHHHHHHHhhcCCchhHHHH-
Q 009632          159 ---------ILKTELRSIYTQLCQDD------MPMVRRSAASNLG-KFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLL-  221 (530)
Q Consensus       159 ---------~~~~~l~~~l~~l~~d~------~~~vR~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~-  221 (530)
                               .+....+|.+...-..+      ....|...+..+. .+....+ ......+...+.++..+.++.++.. 
T Consensus       554 a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~-~dv~~~l~~s~~e~as~~~~s~~~~~  632 (1176)
T KOG1248|consen  554 AAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTP-TDVVGSLKDSAGELASDLDESVASFK  632 (1176)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHhHhccchhhhhhHH
Confidence                     13456777777765543      3344555555544 2333222 2334556667777777776555443 


Q ss_pred             ---HHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhcCCCcH
Q 009632          222 ---AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEA  294 (530)
Q Consensus       222 ---a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~  294 (530)
                         -+..+..++.....+. ...+..+.....+..+..++.-+...|..+...-.-+..    ...+...+...+++...
T Consensus       633 ~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~  711 (1176)
T KOG1248|consen  633 TLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS  711 (1176)
T ss_pred             HHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch
Confidence               3333333344333332 233334444455566788999999999988876211112    22344445555566667


Q ss_pred             HHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc--c---ccCHH---HHHHhHHHHHH
Q 009632          295 EVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMA--P---LLGKD---ATIEQLLPIFL  364 (530)
Q Consensus       295 ~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~--~---~~~~~---~~~~~l~~~l~  364 (530)
                      .+|...++++..+.+..+.+  .+....+|-+.=..++.+...|..+..++..++  .   ..|.+   ...+.+++.+.
T Consensus       712 ~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Is  791 (1176)
T KOG1248|consen  712 PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIIS  791 (1176)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence            78999999999999988844  333444444433347777777777777766665  2   22422   24555666666


Q ss_pred             HhhcCCChHHHHHHHHhhHHhhhhh---chhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH---HHHHH
Q 009632          365 SLLKDEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLG  438 (530)
Q Consensus       365 ~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~---~~~~~  438 (530)
                      ..+-.+...++...+-++..+...+   ..+.....++..+.-++...+..+|.+|+.++..++..++....   .+.++
T Consensus       792 agl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL  871 (1176)
T KOG1248|consen  792 AGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELL  871 (1176)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHH
Confidence            5554444444444344444444333   23444567788888888999999999999999999998886654   46689


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH
Q 009632          439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  472 (530)
Q Consensus       439 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~  472 (530)
                      |.++.+.+|....+|..+-..+..+++.+|.+..
T Consensus       872 ~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL  905 (1176)
T KOG1248|consen  872 PSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL  905 (1176)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence            9999999999999999999999999999997643

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.96  E-value=3.5e-06  Score=84.46  Aligned_cols=238  Identities=13%  Similarity=0.080  Sum_probs=151.3

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhc
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  241 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (530)
                      ..+.+-+.+.....+.++++-.-..+..+++.-|.+.  -..++.+.+-++|+|+.+|..|+++++.+    +...+...
T Consensus        54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~  127 (757)
T COG5096          54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGN  127 (757)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHH
Confidence            3444555555557889999999999999988766432  34678899999999999999999999875    34467788


Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccc-hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhh
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  320 (530)
                      +++.+.++++|+++.||+.|+-++..+-+. +++.+.+. ....+..++.|++|.|..+|+.++..+... ....+...+
T Consensus       128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e-~a~~~~~~~  205 (757)
T COG5096         128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE-LAHGYSLEV  205 (757)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh-hhhhHHHHH
Confidence            999999999999999999999999998765 22333343 677788889999999999999999988765 111121222


Q ss_pred             hHhHhHhc---cCC-cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHh
Q 009632          321 LPCVKELS---SDS-SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ  396 (530)
Q Consensus       321 ~~~l~~~~---~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  396 (530)
                      ...+.++.   .+. ...++....+.+.........+  ...+...+...++-.++.+-..++..+-.+...+....+..
T Consensus       206 ~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s--~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~  283 (757)
T COG5096         206 ILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDS--AEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFL  283 (757)
T ss_pred             HHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCc--HHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHH
Confidence            22222211   111 1334444444444333222211  11111112222334556666666666666655555444444


Q ss_pred             hHHHHHHHHhcCC
Q 009632          397 SLLPAIVELAEDR  409 (530)
Q Consensus       397 ~l~~~l~~~~~~~  409 (530)
                      ...|.+..++..+
T Consensus       284 ~~~~~l~~Ll~~~  296 (757)
T COG5096         284 ISSPPLVTLLAKP  296 (757)
T ss_pred             hhccHHHHHHcCC
Confidence            5555555554444

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.94  E-value=3.6e-05  Score=77.41  Aligned_cols=460  Identities=14%  Similarity=0.112  Sum_probs=238.5

Q ss_pred             hcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhc
Q 009632           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT   96 (530)
Q Consensus        18 l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~   96 (530)
                      +.+.+...|..|++.+-..+. .|.+  ...+.|-+.. +...|.|+++..-..+..+++.-+  +..-..++.+..-++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~-~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLavNti~kDl~  102 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMS-LGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLAVNTIQKDLQ  102 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHh-cCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHhhcc
Confidence            677888889888887655432 2432  4455555444 557789999999888888877422  322334456666778


Q ss_pred             ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHH-HHHHHHhhcCCC
Q 009632           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE-LRSIYTQLCQDD  175 (530)
Q Consensus        97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~-l~~~l~~l~~d~  175 (530)
                      |+++.+|..|++.++.+    ....+.+.+++.+.++.+++++.||..|+.++..+...-...+... ....+..++.|+
T Consensus       103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~  178 (757)
T COG5096         103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADS  178 (757)
T ss_pred             CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCC
Confidence            99999999999888776    5567778889999999999999999999999998887655555555 677777889999


Q ss_pred             ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh-cCCc---hhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC
Q 009632          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQ---DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ  251 (530)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~  251 (530)
                      +|.|-..|+.++..+-.-.. ..+...+...+.++. ...+   +-++..-.+.+.......+.+  ...+...+.....
T Consensus       179 dP~Vi~nAl~sl~~i~~e~a-~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s--~~~~~~~~~~~~~  255 (757)
T COG5096         179 DPIVIANALASLAEIDPELA-HGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDS--AEDFEERLSPPLQ  255 (757)
T ss_pred             CchHHHHHHHHHHHhchhhh-hhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCc--HHHHHHhccchhh
Confidence            99999999888887755311 111111111111111 0111   223333233332222211111  0111111112233


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhc---
Q 009632          252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---  328 (530)
Q Consensus       252 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~---  328 (530)
                      ..+..+-..+...+..+..............|.+..++..+ ++.....+.-...+.-..-+     .++.....+.   
T Consensus       256 ~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l~~~~-----k~~~~~~~~f~~~  329 (757)
T COG5096         256 HNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP-ESLIQYVLRRNIQIDLEVCS-----KLLDKVKKLFLIE  329 (757)
T ss_pred             hCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC-HHHHHHHHHHhhHHHHHhhH-----HHHHHHhhhhhhh
Confidence            44555666666666665555544433344455555555544 33333333322222111111     1111111110   


Q ss_pred             cCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC--CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh
Q 009632          329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  406 (530)
Q Consensus       329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~  406 (530)
                      .+..-.+..........++..   ... .++++-+.....+  .++++-..++++++.+......  ....++..+.+++
T Consensus       330 ~~~~i~~~lek~~~~t~l~~~---~n~-~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s--~~~~~I~~~lel~  403 (757)
T COG5096         330 YNDDIYIKLEKLDQLTRLADD---QNL-SQILLELIYYIAENHIDAEMVSEAIKALGDLASKAES--SVNDCISELLELL  403 (757)
T ss_pred             ccchHHHHHHHHHHHhhcCCc---hhh-HHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHhc
Confidence            011112222222222222211   111 1244555555555  5667777777888777655421  1234555555555


Q ss_pred             cCCChHHHHHHHHHHH-------------HHHhhhChhhHHHHHHHHHH---HHhc--CCcHHHHHHH-----HHHHHHH
Q 009632          407 EDRHWRVRLAIIEYIP-------------LLASQLGVGFFDDKLGALCM---QWLQ--DKVYSIRDAA-----ANNLKRL  463 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~-------------~l~~~~~~~~~~~~~~~~l~---~~l~--d~~~~Vr~~a-----~~~l~~l  463 (530)
                      .. -| .|...+....             .....+..+ ..+.+.+.+.   ..+.  +..+.++..+     +..+|++
T Consensus       404 ~g-~~-~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~-~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~  480 (757)
T COG5096         404 EG-VW-IRGSYIVQEVRIVDCISVIRISVLVLRILPNE-YPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEF  480 (757)
T ss_pred             cc-hh-hccchhhhhhcccceeeeeehhcchhhhcCCc-chhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHH
Confidence            51 11 2222222221             111111111 1112223322   2232  3356777777     6677776


Q ss_pred             HHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632          464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (530)
Q Consensus       464 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~  506 (530)
                      .......  .+.++.......-++...++......-.++.-..
T Consensus       481 ~~~i~r~--~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~  521 (757)
T COG5096         481 SDIIPRL--EPELLRIAISNFVDETLEVQYTILMSSVKLIANS  521 (757)
T ss_pred             HHHHhhh--hHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhC
Confidence            6544211  1234444444556777777777766666654433

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.92  E-value=3.1e-06  Score=78.28  Aligned_cols=461  Identities=13%  Similarity=0.077  Sum_probs=250.7

Q ss_pred             HhcChhHHHHHHHhhcHHHHHHhhChHhh---hhcc--------cccccc--ccCCchHHHHHHHHHHhcccc-------
Q 009632           17 ELKNDDIQLRLNSIRRLSTIARALGEERT---RKEL--------IPFLSE--NNDDDDEVLLAMAEELGVFIP-------   76 (530)
Q Consensus        17 ~l~~~~~~~R~~a~~~l~~~~~~~~~~~~---~~~l--------~~~l~~--~~d~~~~vr~~~~~~l~~~~~-------   76 (530)
                      ++++.....|..|+..+......+.....   |..+        -|.++.  +.|+++..|.-+-+.+..+..       
T Consensus         4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls   83 (728)
T KOG4535|consen    4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLS   83 (728)
T ss_pred             chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHH
Confidence            46778888999998888777655432221   2222        344444  778888888766555443322       


Q ss_pred             ---cCCCccchhc-------chh----HHHhhhcccchHHHHHHHHHHHHHHhhcChhhhh----hhHHHHHHHHhcCCc
Q 009632           77 ---YVGGVEHAHV-------LLP----PLETLCTVEETCVRDKAVESLCRIGSQMRESDLV----DWYIPLVKRLAAGEW  138 (530)
Q Consensus        77 ---~~~~~~~~~~-------l~~----~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~l~~~~~  138 (530)
                         ..|..++.+.       +..    ++..+..+..+.+--..++|+..++..-+-+.++    ..+..-++.+++..+
T Consensus        84 ~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d  163 (728)
T KOG4535|consen   84 VAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD  163 (728)
T ss_pred             HHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence               2232222211       111    1233445556777778889999998876654432    335566677778888


Q ss_pred             cchhHHHHhHhhhhcCCC-------------------------ChHHHHHHH--HHHHhh--------------------
Q 009632          139 FTARVSACGLFHIAYPSA-------------------------PDILKTELR--SIYTQL--------------------  171 (530)
Q Consensus       139 ~~~r~~~~~~l~~l~~~~-------------------------~~~~~~~l~--~~l~~l--------------------  171 (530)
                      +.+|.++...++.+....                         +++.++++-  +...++                    
T Consensus       164 ~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~  243 (728)
T KOG4535|consen  164 VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCIS  243 (728)
T ss_pred             CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeee
Confidence            899998888877654311                         011111110  001110                    


Q ss_pred             ------------------cCC--CChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 009632          172 ------------------CQD--DMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (530)
Q Consensus       172 ------------------~~d--~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~  230 (530)
                                        ...  .-..+|-.+.+.+..++.+++- ..+.-++...+...+.+..+.++..+...+..++
T Consensus       244 i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg  323 (728)
T KOG4535|consen  244 IVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELG  323 (728)
T ss_pred             eeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHH
Confidence                              000  1135788888888888877664 2233345555566678888999999999998888


Q ss_pred             hhcCc----hhhhhccH-HHHHH-hc--------CC-CCHHHHHHHHHHHHHHHHHh--CCcccccchHHHHHHhcCCCc
Q 009632          231 KLLEP----QDCVAHIL-PVIVN-FS--------QD-KSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNE  293 (530)
Q Consensus       231 ~~~~~----~~~~~~~~-~~l~~-~~--------~d-~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~  293 (530)
                      ..++.    +.....+. ..+.. +.        -| .......+.|..+..+....  +-........+.|+..+.|.+
T Consensus       324 ~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~  403 (728)
T KOG4535|consen  324 TGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSK  403 (728)
T ss_pred             HHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchH
Confidence            77652    11111111 10111 11        11 22334556666666665432  112223467788888888655


Q ss_pred             H-HHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC
Q 009632          294 A-EVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD  369 (530)
Q Consensus       294 ~-~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  369 (530)
                      . -|+.+|+++++...-.-+..   .+.......+...+.|+...+|..++..++.+.                 ..|-+
T Consensus       404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnIT-----------------dAL~~  466 (728)
T KOG4535|consen  404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNIT-----------------DALIV  466 (728)
T ss_pred             HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhH-----------------HHHHc
Confidence            3 46667776665443222211   111222223333344555555555444443332                 23334


Q ss_pred             CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh--h-HH----HHHHHHHH
Q 009632          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--F-FD----DKLGALCM  442 (530)
Q Consensus       370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~--~-~~----~~~~~~l~  442 (530)
                      +.+.+|..+....+.+....         +. ......-.++++|..++++++++.+.+.+-  . +.    ..+...+.
T Consensus       467 ~~Ps~~s~~eR~sg~ll~~~---------~~-~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~  536 (728)
T KOG4535|consen  467 NMPTPDSFQERFSGLLLLKM---------LR-SAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALIS  536 (728)
T ss_pred             CCCCchHHHHHHHHHHHHHH---------HH-HHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccc
Confidence            44555555555444432210         10 111123346788999999998888766521  1 11    11222222


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHhCh-----hHHhhhhHHHHHhhccC-CChHHHHHHHHHHHHHhhh
Q 009632          443 QWLQDKVYSIRDAAANNLKRLAEEFGP-----EWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       443 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~i~~~  505 (530)
                      .........||-++|.++|.+++.-.-     +|. ..+.+.+..++.+ .|..||..|..++....+-
T Consensus       537 ~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA-~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  537 TVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWA-SQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             ceecccccccchHHHHHHHHhhcCccccccCCCch-HHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence            222334567999999999999875322     222 4567777777654 7899999988888765543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.89  E-value=3.4e-05  Score=81.24  Aligned_cols=132  Identities=11%  Similarity=0.030  Sum_probs=80.6

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh-HHHHHHHHHHHH-------hcCC----cHHHHHHHHHHHHHH
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQW-------LQDK----VYSIRDAAANNLKRL  463 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~-~~~~~~~~l~~~-------l~d~----~~~Vr~~a~~~l~~l  463 (530)
                      ..+-..|...+-.-+...-..++.|++.++......+ +...++..+.+.       ..+.    ....-...+-++|.+
T Consensus      1120 ~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l 1199 (1692)
T KOG1020|consen 1120 ASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLL 1199 (1692)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHH
Confidence            3344444444445566677778888888887643222 122222222222       2223    224455677788888


Q ss_pred             HHHhC--------hh------HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCC
Q 009632          464 AEEFG--------PE------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRY  527 (530)
Q Consensus       464 ~~~~~--------~~------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~  527 (530)
                      ++++.        +.      ...+.++.+|.-+.++.+-.+|..|+.++|.++..-+.-+..+++...+...+.|..
T Consensus      1200 ~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n 1277 (1692)
T KOG1020|consen 1200 SRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDN 1277 (1692)
T ss_pred             HHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhc
Confidence            88652        11      223566667777778888999999999999999877766666666666666555543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.89  E-value=5.7e-07  Score=91.55  Aligned_cols=192  Identities=15%  Similarity=0.182  Sum_probs=155.7

Q ss_pred             HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 009632          316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (530)
Q Consensus       316 ~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  392 (530)
                      ..+.+-+.+...+.+++|.-|..+++.+....+.-+   ...+...+...+-..+.|.+..|-..++..+..++..++..
T Consensus       250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~  329 (815)
T KOG1820|consen  250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL  329 (815)
T ss_pred             hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence            345566666666778999999999988877765544   22344556666667788999999999999999999887754


Q ss_pred             --HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632          393 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (530)
Q Consensus       393 --~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  470 (530)
                        .+...++|.+.+.+.+....+|..+..++..++...+    ...+.+.+..+++++.+++|......+....+..++.
T Consensus       330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence              3456788999999999999999999999988877333    4568889999999999999999999999988888732


Q ss_pred             ----HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHH
Q 009632          471 ----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT  511 (530)
Q Consensus       471 ----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~  511 (530)
                          .....++|.+....+|.+.+||.++..+++.+...+|.+.+
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~  450 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF  450 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence                22367899999999999999999999999999999997654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.4e-05  Score=78.66  Aligned_cols=471  Identities=12%  Similarity=0.095  Sum_probs=258.7

Q ss_pred             HhhcHHHHH------HhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHH
Q 009632           29 SIRRLSTIA------RALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCV  102 (530)
Q Consensus        29 a~~~l~~~~------~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~v  102 (530)
                      +...|.++.      ++++.....+.+.....-.+..++..|+.....++.+...-  .+ ...+..-+..-.+-.++.+
T Consensus        40 c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~is--ed-viivtsslmkD~t~~~d~y  116 (865)
T KOG1078|consen   40 CRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKIS--ED-VIIVTSSLMKDMTGKEDLY  116 (865)
T ss_pred             HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc--hh-hhhhhHHHHhhccCCCcch
Confidence            344455543      44444333344444433355677788888888877775521  12 2222233333345567788


Q ss_pred             HHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHH
Q 009632          103 RDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRS  182 (530)
Q Consensus       103 R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~  182 (530)
                      |-.|+.+|..+...    .....+...+.+..-+....++..+.----.+.+ ..++......+...+...+.+--+++.
T Consensus       117 r~~AiR~L~~I~d~----~m~~~iery~kqaivd~~~avSsaalvss~hll~-~~~~~vkrw~neiqea~~s~~~m~QyH  191 (865)
T KOG1078|consen  117 RAAAIRALCSIIDG----TMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLP-ISFDVVKRWANEVQEAVNSDNIMVQYH  191 (865)
T ss_pred             hHHHHHHHHhhcCc----chhHHHHHHHHhHeeccccccchHHHHHHhhhhc-ccHHHHHHHHHhhhhccCcHHHHHHHH
Confidence            88888877777432    2223355666666667766665543221111121 222333333334444444444456666


Q ss_pred             HHHHHHHHHhhhcchhhHHHHHHHHHH-hhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHH
Q 009632          183 AASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV  261 (530)
Q Consensus       183 a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~  261 (530)
                      +...+..+-+.-  ......++..+.+ .+.++-  -+..-+..........  ......+.|.+...+.++...|-..+
T Consensus       192 alglLyqirk~d--rla~sklv~~~~~~~~~~~~--A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~Ea  265 (865)
T KOG1078|consen  192 ALGLLYQIRKND--RLAVSKLVQKFTRGSLKSPL--AVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEA  265 (865)
T ss_pred             HHHHHHHHHhhh--HHHHHHHHHHHccccccchh--HHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHH
Confidence            655555543310  1111222222211 111111  1111111111111111  22345688888999999999898888


Q ss_pred             HHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHH
Q 009632          262 ANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS  341 (530)
Q Consensus       262 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~  341 (530)
                      +.++..+....+.+..  .-+..+.-++..+.+-.|-+|...|..++-..+...  ...-.-+..++.|.+..+-.-++.
T Consensus       266 Arai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~cN~elE~lItd~NrsIat~AIT  341 (865)
T KOG1078|consen  266 ARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVCNLDLESLITDSNRSIATLAIT  341 (865)
T ss_pred             HHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cccchhHHhhhcccccchhHHHHH
Confidence            8888777655444332  245666777889999999999999999987654331  122333455667777666555554


Q ss_pred             HHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC-CChHHHHHHHHH
Q 009632          342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEY  420 (530)
Q Consensus       342 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-~~~~~R~~~~~~  420 (530)
                      .+-.-    |.+.....++..+-....|-+.+.+..+++++..++..+...+  ..+++.|.+++.+ ..+..+.+.+.+
T Consensus       342 tLLKT----G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~  415 (865)
T KOG1078|consen  342 TLLKT----GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDA  415 (865)
T ss_pred             HHHHh----cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHH
Confidence            44433    3344444454445555544444445555555666666665443  3566666666544 467888888888


Q ss_pred             HHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHH
Q 009632          421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAIS  500 (530)
Q Consensus       421 l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~  500 (530)
                      +..+.......  ....+..+...+.|..  .+.-+...++.+.+-..........+..+.+..-=.|..||.+|..++.
T Consensus       416 Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~ala  491 (865)
T KOG1078|consen  416 IIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALA  491 (865)
T ss_pred             HHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHH
Confidence            88877643311  1223334444444533  2445555555554433222222344555555555568899999999999


Q ss_pred             HHhhhcChHHHHhhHHHHHHhhccCCCCC
Q 009632          501 LLAPVMGSEITCSRLLPVVINASKDRYLN  529 (530)
Q Consensus       501 ~i~~~~~~~~~~~~~~p~l~~~l~D~~~~  529 (530)
                      ++.  .+.+...+.+.-.+++++.|+...
T Consensus       492 Kfg--~~~~~l~~sI~vllkRc~~D~Dde  518 (865)
T KOG1078|consen  492 KFG--AQDVVLLPSILVLLKRCLNDSDDE  518 (865)
T ss_pred             HHh--cCCCCccccHHHHHHHHhcCchHH
Confidence            998  445556677888899999987653

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.86  E-value=3.7e-05  Score=74.79  Aligned_cols=201  Identities=13%  Similarity=0.148  Sum_probs=130.0

Q ss_pred             HHHHHHHhCCcccc---cchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhc-cCCcHHHHHHH
Q 009632          265 LYELCEAVGPEPTR---MDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQHVRSAL  339 (530)
Q Consensus       265 l~~l~~~~~~~~~~---~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~~  339 (530)
                      +..+...+.++...   ..++..+.... ..+++..|..+++.+..+...+..+...+.++..+.... .......|..+
T Consensus       171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  250 (415)
T PF12460_consen  171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQA  250 (415)
T ss_pred             HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHH
Confidence            34444444444332   23455555543 344588999999999999998765544445555554433 34445566666


Q ss_pred             HHHHHhhcccc--CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---------------hhHHHhhHHHHH
Q 009632          340 ASVIMGMAPLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---------------IDLLSQSLLPAI  402 (530)
Q Consensus       340 ~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---------------~~~~~~~l~~~l  402 (530)
                      ++.+..+.+.+  ........++..+..++.|  +.+...++++++.+.....               ...+...++|.+
T Consensus       251 ~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L  328 (415)
T PF12460_consen  251 LEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKL  328 (415)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHH
Confidence            66666665433  1123345666777788887  7788888888888765421               123335667777


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhhhChhhHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~---~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                      .+..++.+...|..++.+++.+.+..+...+.   +.++|.+++.+.-++..|+.+++.++..+...-
T Consensus       329 ~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  329 LEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            77777666667888888888888877766543   457888888887777778888888887777654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=9.6e-06  Score=80.07  Aligned_cols=437  Identities=11%  Similarity=0.061  Sum_probs=245.9

Q ss_pred             ccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhccc-chHHHHHHHHHHHHHHh-hcChh-----
Q 009632           48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGS-QMRES-----  120 (530)
Q Consensus        48 ~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~-~~~~~-----  120 (530)
                      .+..++.+.-+++|.+|+.+.++|..+...   ..+...++.++   .++. +..+|.+|.-.+++-++ .|.+.     
T Consensus         6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~q---~~y~l~lL~Lv---~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~   79 (960)
T KOG1992|consen    6 TLANYLLQTLSPDPSVRKPAERALRSLEGQ---QNYPLLLLNLV---ANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI   79 (960)
T ss_pred             HHHHHHHhcCCCCCccCchHHHHHHHhccC---CCchHHHHHHH---hccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence            344455566678899999999988776431   23333443333   3443 78999999999999888 45431     


Q ss_pred             ----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc
Q 009632          121 ----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP  196 (530)
Q Consensus       121 ----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~  196 (530)
                          .....+-..+..++-+....++......++.+...--++.++.++|-+..-++..+-.+-.++...--.+.+....
T Consensus        80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~  159 (960)
T KOG1992|consen   80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP  159 (960)
T ss_pred             ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc
Confidence                1223345555555555555677777777777777777788999999999888877777766666666667766654


Q ss_pred             hhhHH-------H--------HHHHHHH---hh--cCCchhHHHHHHHHHHHHhhhc--------Cc--hhhhhccHHHH
Q 009632          197 AHLKT-------D--------IMSIFED---LT--QDDQDSVRLLAVEGCAALGKLL--------EP--QDCVAHILPVI  246 (530)
Q Consensus       197 ~~~~~-------~--------l~~~l~~---~~--~d~~~~vr~~a~~~l~~l~~~~--------~~--~~~~~~~~~~l  246 (530)
                      +...+       .        +..++.+   ++  .+++...-..-...+--+++.+        ++  ++..+..++.+
T Consensus       160 efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F  239 (960)
T KOG1992|consen  160 EFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAF  239 (960)
T ss_pred             ccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHH
Confidence            32111       1        1112221   12  1122111111111111112211        11  22233345555


Q ss_pred             HHhcC-------C-C-C----HHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcH-----HHHHHHHHHHHH
Q 009632          247 VNFSQ-------D-K-S----WRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEA-----EVRIAAAGKVTK  306 (530)
Q Consensus       247 ~~~~~-------d-~-~----~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~  306 (530)
                      .+++.       + . +    ..+|...|+.+.-.+....+++.  ...++...-.++.+..+     .....|++-|..
T Consensus       240 ~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~  319 (960)
T KOG1992|consen  240 HKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTS  319 (960)
T ss_pred             HHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            55443       1 1 1    25677888877776665544431  22333333344443332     334455555555


Q ss_pred             HHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHH--hhcccc-CHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHhh
Q 009632          307 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIM--GMAPLL-GKDATIEQLLPIFLSLLKDEFP-DVRLNIISKL  382 (530)
Q Consensus       307 ~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~--~l~~~~-~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l  382 (530)
                      +++.-...       ..+      .+..+-..+++.+.  .+.-.- ..+-|.+.-+.++-+-++-.+. .-|..|++.+
T Consensus       320 V~~r~~y~-------~~F------~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlv  386 (960)
T KOG1992|consen  320 VSRRPHYA-------ELF------EGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLV  386 (960)
T ss_pred             HHhhhhhH-------hhh------cchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHH
Confidence            54421111       000      01122222222211  111111 1233444456666666664443 4577888999


Q ss_pred             HHhhhhhchhHHH----hhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhC---------------hhhHHHHHHHHH
Q 009632          383 DQVNQVIGIDLLS----QSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLG---------------VGFFDDKLGALC  441 (530)
Q Consensus       383 ~~l~~~~~~~~~~----~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~---------------~~~~~~~~~~~l  441 (530)
                      +.+++.+.. ++.    ..+-..+.++.+++  +|.-...++..+..++...+               .++|...+.|.+
T Consensus       387 rgL~~~fe~-~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L  465 (960)
T KOG1992|consen  387 RGLCKNFEG-QVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDL  465 (960)
T ss_pred             HHHHHHhcc-hhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHh
Confidence            999988742 221    12222233344554  79999999999988876521               355667777777


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       442 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      ..-=....+-+|..+++-+-.+-...|+. ....++|.+.+.+..+...|...|+.++.++...
T Consensus       466 ~s~~vn~~pilka~aIKy~~~FR~ql~~~-~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~v  528 (960)
T KOG1992|consen  466 LSPNVNEFPILKADAIKYIYTFRNQLGKE-HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTV  528 (960)
T ss_pred             ccCccccccchhhcccceeeeecccCChH-HHHHHHHHHHHhccCcchHHHHHHHHHHHhcccc
Confidence            65333566778888887765555556655 3467899999999999999999999999987543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=2.3e-05  Score=76.69  Aligned_cols=434  Identities=15%  Similarity=0.144  Sum_probs=219.7

Q ss_pred             HHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccch-hcc--
Q 009632           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-HVL--   87 (530)
Q Consensus        12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~-~~l--   87 (530)
                      ..+.+.|.+++...+..|++.+-.+  .+..++....++-.++- +-..+-+..+.....+.-+-+.-++.... +.+  
T Consensus        23 ~~ik~~Lek~~~~~KIeamK~ii~~--mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILv  100 (948)
T KOG1058|consen   23 DEIKEKLEKGDDEVKIEAMKKIIAL--MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILV  100 (948)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHH--HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHH
Confidence            4678889999999998888765443  23334443333333333 44556666666665554443333312222 222  


Q ss_pred             hhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH--HHHHHH
Q 009632           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELR  165 (530)
Q Consensus        88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~  165 (530)
                      ...+..-+++++..+|-..++-+.++    .+..+.+-++|.+....+.....||..|..++..++.....-  -.++++
T Consensus       101 cna~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi  176 (948)
T KOG1058|consen  101 CNAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELI  176 (948)
T ss_pred             HHHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHH
Confidence            23345556788888888766444433    444455556777777777777777777777776666552211  112222


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHH
Q 009632          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV  245 (530)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  245 (530)
                      .-+  +..+.++..++.|.-.|-..    .++....++..-+.+. .+-++..+..-++.+...+..-+.  .....+.+
T Consensus       177 ~~f--L~~e~DpsCkRNAFi~L~~~----D~ErAl~Yl~~~idqi-~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~~  247 (948)
T KOG1058|consen  177 ESF--LLTEQDPSCKRNAFLMLFTT----DPERALNYLLSNIDQI-PSFNDSLQLVIVELIRKVCLANPA--EKARYIRC  247 (948)
T ss_pred             HHH--HHhccCchhHHHHHHHHHhc----CHHHHHHHHHhhHhhc-cCccHHHHHHHHHHHHHHHhcCHH--HhhHHHHH
Confidence            222  23355566666554433221    2222222221111111 111223333333333333321111  12234444


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHh
Q 009632          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK  325 (530)
Q Consensus       246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~  325 (530)
                      +..+++..++.|+..++.++..+                      .++|..-++|+.++-.+....              
T Consensus       248 i~~lL~stssaV~fEaa~tlv~l----------------------S~~p~alk~Aa~~~i~l~~ke--------------  291 (948)
T KOG1058|consen  248 IYNLLSSTSSAVIFEAAGTLVTL----------------------SNDPTALKAAASTYIDLLVKE--------------  291 (948)
T ss_pred             HHHHHhcCCchhhhhhcceEEEc----------------------cCCHHHHHHHHHHHHHHHHhc--------------
Confidence            44444444444544443322222                      122333334433333333221              


Q ss_pred             HhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHH
Q 009632          326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  405 (530)
Q Consensus       326 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  405 (530)
                           ++-+++.-...-+..+.  .+.+.....+.--++.+|..++-+||..+++..-.+...-..+.+.+.+-..+.+-
T Consensus       292 -----sdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT  364 (948)
T KOG1058|consen  292 -----SDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKT  364 (948)
T ss_pred             -----cCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhc
Confidence                 11123322222233332  11233344444556778888899999998887666554433333322222222222


Q ss_pred             ---hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHh
Q 009632          406 ---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE  482 (530)
Q Consensus       406 ---~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  482 (530)
                         -++.+...|+..++++...+-.+..  +...++|.++..+.|.+..--...+..+....+.+..  ....++..+..
T Consensus       365 ~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~  440 (948)
T KOG1058|consen  365 HNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LRASIIEKLLE  440 (948)
T ss_pred             cccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHH
Confidence               1334567899999999888765553  4567899999999998876555555555555555432  22344444444


Q ss_pred             hcc-CCChHHHHHHHHHHHHHhhhcC
Q 009632          483 MIN-NPHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       483 ~~~-d~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      .+. =.+...-.+++|.+|..++..+
T Consensus       441 ~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  441 TFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             hhhhhcccccchhHHHHHHHHHhhhH
Confidence            332 2344555678888888776544

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.81  E-value=2.7e-06  Score=86.75  Aligned_cols=336  Identities=11%  Similarity=0.042  Sum_probs=216.2

Q ss_pred             HHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhH-HHHH
Q 009632          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIM  204 (530)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~l~  204 (530)
                      +.+.....+..+....|.........+.   ..+..++....+..+..-..+..-..++..+..+....+.+... ..++
T Consensus        64 l~~~~~~~l~~~~~~~~~~~~~~~~~i~---~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~  140 (815)
T KOG1820|consen   64 LLSFGLKCLDSKRVNIRDTKTQSLLRIG---KLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI  140 (815)
T ss_pred             eccchhhhcccccccccCcchhHHHHHH---HhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc
Confidence            4444444444443344443333333330   11234455566666666677777777777777777665553222 2223


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh--------------------------hhhccHHHHHHh---cCCCCH
Q 009632          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--------------------------CVAHILPVIVNF---SQDKSW  255 (530)
Q Consensus       205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--------------------------~~~~~~~~l~~~---~~d~~~  255 (530)
                      +.+-++.   +..||..+...+..+.+..|...                          +...--+.....   ..+++|
T Consensus       141 ~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  217 (815)
T KOG1820|consen  141 KHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNV  217 (815)
T ss_pred             ccCcccc---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCCh
Confidence            3223333   34567777666666665554321                          000001111111   112222


Q ss_pred             HHHHHHHHHHHHHHH-----------HhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--HH-HHHhhhh
Q 009632          256 RVRYMVANQLYELCE-----------AVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PE-LAIQHIL  321 (530)
Q Consensus       256 ~vr~~~~~~l~~l~~-----------~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~~-~~~~~l~  321 (530)
                      .-+...-....+...           .+.+......+.+.+...+.+++|--|..|+..+...++.-+  .. .....+.
T Consensus       218 ~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~  297 (815)
T KOG1820|consen  218 KEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLG  297 (815)
T ss_pred             hhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHH
Confidence            222111111111100           011112245677888888899999999999999998887655  11 2234445


Q ss_pred             HhHhHhccCCcHHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHH
Q 009632          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (530)
Q Consensus       322 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  399 (530)
                      ..+.....|.|-.+...++..+..++..++..  .+...+.|.++..++|....+|..+..++..+++....    ..+.
T Consensus       298 ~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----~~~~  373 (815)
T KOG1820|consen  298 ILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----SKMS  373 (815)
T ss_pred             HHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----HHHH
Confidence            55556678999999999999999999988764  35677899999999999999999999999998874442    4677


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHhhhChh----hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH
Q 009632          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  471 (530)
Q Consensus       400 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~  471 (530)
                      +.+...+++.+++.|.....++.......++.    .....+.|.+....+|...+||.+|.++++.+.+.+|...
T Consensus       374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~  449 (815)
T KOG1820|consen  374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV  449 (815)
T ss_pred             HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence            78888899999999999999999888887732    2346789999999999999999999999999999999663

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.80  E-value=1.7e-05  Score=77.20  Aligned_cols=288  Identities=14%  Similarity=0.125  Sum_probs=171.6

Q ss_pred             chHHHHHHHHHHHHHHhhcChhh--------hhhhHHHHHHHHhcCC-----c--cchhHHHHhHhhhhcCCCChHHHHH
Q 009632           99 ETCVRDKAVESLCRIGSQMRESD--------LVDWYIPLVKRLAAGE-----W--FTARVSACGLFHIAYPSAPDILKTE  163 (530)
Q Consensus        99 ~~~vR~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~l~~~~-----~--~~~r~~~~~~l~~l~~~~~~~~~~~  163 (530)
                      +.......+.++..+.+......        ....++|.+..+....     +  +.+-..+..++..+...++.+.++.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            56667777888888776543322        1122555555554221     1  2344456777888888888876666


Q ss_pred             HHHHHHhhcC----------CCC--hhHHHHHHHHHHHHHhhhcchhh---HHHHHHHHHHhhcC-CchhHHHHHHHHHH
Q 009632          164 LRSIYTQLCQ----------DDM--PMVRRSAASNLGKFAATVEPAHL---KTDIMSIFEDLTQD-DQDSVRLLAVEGCA  227 (530)
Q Consensus       164 l~~~l~~l~~----------d~~--~~vR~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~d-~~~~vr~~a~~~l~  227 (530)
                      +...+..+..          +.+  +.........+..+...++++..   ...++..+.++... +++..|..+.+.++
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la  215 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA  215 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            6655554332          111  12334444455555556666433   23455666665444 35789999999999


Q ss_pred             HHhhhcCchhhhhccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHh--CCcccccchHHHHHHhcCCCcHHHHHHHHHHH
Q 009632          228 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV  304 (530)
Q Consensus       228 ~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  304 (530)
                      .+...+++......++..+.... .......|..+...+.-+.+++  ........++..+.+++.|  +++...+++++
T Consensus       216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f  293 (415)
T PF12460_consen  216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF  293 (415)
T ss_pred             HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence            99999876554455555554444 3444556666666666666654  2222345678888888888  67889999999


Q ss_pred             HHHHHhhCH---------------HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH---HHhHHHHHHHh
Q 009632          305 TKFCRILNP---------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSL  366 (530)
Q Consensus       305 ~~~~~~~~~---------------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~  366 (530)
                      +.+....+.               +.+-..++|.+.+..++.+...|.....++..+.+..+...+   .+.++|.+++.
T Consensus       294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs  373 (415)
T PF12460_consen  294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS  373 (415)
T ss_pred             hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            988765211               122244455555444444444566666666666665554332   34566666666


Q ss_pred             hcCCChHHHHHHHHhhHHhhhh
Q 009632          367 LKDEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       367 l~d~~~~vr~~a~~~l~~l~~~  388 (530)
                      |.-++..++..++.++..+...
T Consensus       374 L~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  374 LSLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHc
Confidence            6666666666666666666544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.80  E-value=9.4e-06  Score=81.22  Aligned_cols=464  Identities=14%  Similarity=0.098  Sum_probs=253.6

Q ss_pred             cccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh---------
Q 009632           50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---------  119 (530)
Q Consensus        50 ~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---------  119 (530)
                      ...+.. +.|.-+.||..+...+..+.+..++. ....++..+-.-..|+--.+++++...+..-....++         
T Consensus       474 ~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~-~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~  552 (1529)
T KOG0413|consen  474 YNIVYMRCLDKAAAVRLHALNSLTKILQLQSHR-EAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL  552 (1529)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-chHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence            333444 77889999999998887776655532 2344444444445566667776665554433221111         


Q ss_pred             ------------------hhhhhhHHHHHHHHhc-CCccchhHHHHhHhhhhcCCCChH-HHHHHHHHHHhhcCCCChhH
Q 009632          120 ------------------SDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMV  179 (530)
Q Consensus       120 ------------------~~~~~~l~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~l~~l~~d~~~~v  179 (530)
                                        ..++..++..+.+-.. ++...+|..+++.+.......... ..+..+-++..+|.|+-..|
T Consensus       553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv  632 (1529)
T KOG0413|consen  553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV  632 (1529)
T ss_pred             cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence                              1123334545544444 666778999999988877777665 45666888999999999999


Q ss_pred             HHHHHHHHHHHHhhhcch-hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh-cCc------------------hhhh
Q 009632          180 RRSAASNLGKFAATVEPA-HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEP------------------QDCV  239 (530)
Q Consensus       180 R~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~~------------------~~~~  239 (530)
                      |+.++.+|+.+...-+.- ......+..+...+.|.+..|.+.|.+.+..+..- +..                  ..++
T Consensus       633 rk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~~i~~~~~~s~yl  712 (1529)
T KOG0413|consen  633 RKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLDTIESVTNHSQYL  712 (1529)
T ss_pred             HHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999987643331 12334445566667777777777777644443322 110                  0010


Q ss_pred             hc--------------cHHHHHHh----cCCCCHHHHHHHHH-------------------------HHHHHHHHhCC--
Q 009632          240 AH--------------ILPVIVNF----SQDKSWRVRYMVAN-------------------------QLYELCEAVGP--  274 (530)
Q Consensus       240 ~~--------------~~~~l~~~----~~d~~~~vr~~~~~-------------------------~l~~l~~~~~~--  274 (530)
                      ..              ++......    ..|..|.+-..++-                         .+..+...++.  
T Consensus       713 ~~~~h~w~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~~~L~hI~~~i~~i~  792 (1529)
T KOG0413|consen  713 MSTLHDWVREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLVQYLIHIIENIKKID  792 (1529)
T ss_pred             HHHHHHHHHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHHHHHHHHHHHHHhhh
Confidence            00              00000000    11223433222211                         11222221111  


Q ss_pred             -c---ccccchHHHHHHhcCCCc----HHHHHHHHHHHHHHHHhh------CHHHHHh----hhhHhHhHhccCCcHH--
Q 009632          275 -E---PTRMDLVPAYVRLLRDNE----AEVRIAAAGKVTKFCRIL------NPELAIQ----HILPCVKELSSDSSQH--  334 (530)
Q Consensus       275 -~---~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~------~~~~~~~----~l~~~l~~~~~d~~~~--  334 (530)
                       +   ...+.+...+..+++.+.    .++-..+..+++..+..-      +.+.+..    .+.|....+-....|.  
T Consensus       793 ~~l~s~~vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~  872 (1529)
T KOG0413|consen  793 DDLKSDLVDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRN  872 (1529)
T ss_pred             hcccHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhc
Confidence             0   012234444444454432    334444444444443321      1111111    1222222111111111  


Q ss_pred             ---HHHHHH----HHHHhhccccCHHHHHHhHHHHHHHhhc----CC-------------------------ChHHHHHH
Q 009632          335 ---VRSALA----SVIMGMAPLLGKDATIEQLLPIFLSLLK----DE-------------------------FPDVRLNI  378 (530)
Q Consensus       335 ---vr~~~~----~~l~~l~~~~~~~~~~~~l~~~l~~~l~----d~-------------------------~~~vr~~a  378 (530)
                         .-..++    -.++.....++. .-..+.++++.+...    |.                         .+.+|..+
T Consensus       873 s~~~~~~l~~~y~v~~~~~~ql~P~-ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~  951 (1529)
T KOG0413|consen  873 SESQERLLCTAYNVAFSYSPQLVPH-ARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVG  951 (1529)
T ss_pred             chhHHHHHHHHhhccccccceeccc-hhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHH
Confidence               101111    111122222221 112233333333321    11                         14578888


Q ss_pred             HHhhHHhhhhhchhHHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHH
Q 009632          379 ISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA  457 (530)
Q Consensus       379 ~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~  457 (530)
                      .-+++.+|-.-  +.+.+.++|.+.+-++- ....+|-..+-+.+-++.....  ..+..+|.+-..|.|+..-||..++
T Consensus       952 vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~iVRrqt~ 1027 (1529)
T KOG0413|consen  952 VVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVIVRRQTI 1027 (1529)
T ss_pred             HHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHHHHHHHH
Confidence            89999988654  34567889998776654 4467888877777777654432  2466899999999999999999999


Q ss_pred             HHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHH
Q 009632          458 NNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI  520 (530)
Q Consensus       458 ~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~  520 (530)
                      ..|..+.+.-=-.|...-++ .+.-.+-|.+.++|..|-..++.+.+.-.+.+|...++..+.
T Consensus      1028 ilL~rLLq~~~vKw~G~Lf~-Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1028 ILLARLLQFGIVKWNGELFI-RFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred             HHHHHHHhhhhhhcchhhHH-HHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence            99998876432223223333 333446689999999999999999987776666565555443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.73  E-value=1.2e-06  Score=85.46  Aligned_cols=231  Identities=16%  Similarity=0.157  Sum_probs=167.8

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-CCc
Q 009632          254 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSS  332 (530)
Q Consensus       254 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~  332 (530)
                      +..-+....+.|.++...+.......+++|.+...+.+..  ..-..+-.+-.|.+......+...++|.+....+ ...
T Consensus       286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~  363 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP  363 (700)
T ss_pred             CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence            3445666777777777777766666788888888775542  1112222333344444444556677777776655 445


Q ss_pred             HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh-cCCCh
Q 009632          333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHW  411 (530)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~~~~~  411 (530)
                      .+++.-+++-...+.+....+++.+.++|.+...++|.+..++..++..+..+.+.+....+.+.++|.+..+. +..+-
T Consensus       364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~  443 (700)
T KOG2137|consen  364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL  443 (700)
T ss_pred             ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence            57777888888889999999999999999999999999999999999999999999988888899999998774 45678


Q ss_pred             HHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--HhChhHHhhhhHHHHHhhccCC
Q 009632          412 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE--EFGPEWAMQHITPQVLEMINNP  487 (530)
Q Consensus       412 ~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~--~~~~~~~~~~i~~~l~~~~~d~  487 (530)
                      .++..++-+++.+++.++.....+.+.|++... +-+++.+.-....+...+.-  ..|.+...+.++|.+..+...+
T Consensus       444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence            999999999999999888887778777766555 33445554444444433322  2234555678899888876555

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.72  E-value=0.00023  Score=72.26  Aligned_cols=356  Identities=14%  Similarity=0.097  Sum_probs=211.9

Q ss_pred             HHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhH
Q 009632          144 SACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSV  218 (530)
Q Consensus       144 ~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~v  218 (530)
                      .+..++..++....-+   ....+++.+.++++..+.++...++..|..++-.-.+  ......+++.+.+++..++...
T Consensus       268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l  347 (708)
T PF05804_consen  268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL  347 (708)
T ss_pred             HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence            5666677777665433   4567888899999988999999888888888754333  2334568899999999888899


Q ss_pred             HHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCcccccchHHHHHHhcC-CCc
Q 009632          219 RLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLR-DNE  293 (530)
Q Consensus       219 r~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-d~~  293 (530)
                      +..++..|.+++..-.-  .-....++|.+..++.+++  .|..+...|..++..-  ...+.....+|.+.+++. .++
T Consensus       348 ~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~  425 (708)
T PF05804_consen  348 VNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE  425 (708)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence            99999999988754322  2334558899999998765  4455666666665321  111223356788777654 345


Q ss_pred             HHHHHHHHHHHHHHHHhhCHH-HH-HhhhhHhHhHhc-cCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhc
Q 009632          294 AEVRIAAAGKVTKFCRILNPE-LA-IQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLK  368 (530)
Q Consensus       294 ~~vr~~a~~~l~~~~~~~~~~-~~-~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~  368 (530)
                      +.+...++..+..++..-... .+ ....++.+.+.. +.+++    .++..+-.++..-|+  ..+.+.+.+++-.+-.
T Consensus       426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~  501 (708)
T PF05804_consen  426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS  501 (708)
T ss_pred             ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence            556555544444443322111 01 112233333222 22221    222334444433322  2233444443333223


Q ss_pred             CCChHHHHHHHHhhHHhhh-hhchhHHH--hhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHH
Q 009632          369 DEFPDVRLNIISKLDQVNQ-VIGIDLLS--QSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALC  441 (530)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~-~~~~~~~~--~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l  441 (530)
                      .++++....++.+++++.. .++...+.  ..++|.+.+.+...  ...+...++.++|.++..-....  ....+++.+
T Consensus       502 ~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~L  581 (708)
T PF05804_consen  502 GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTL  581 (708)
T ss_pred             CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHH
Confidence            3455555555555555431 11112222  37889998887654  34677778888888775322222  224567777


Q ss_pred             HHHhcCC--cHHHHHHHHHHHHHHHHHhChhH---HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          442 MQWLQDK--VYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       442 ~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      ..+++.+  +.+.-...+.++.++...-....   ....+...+..++.|+|..+|..+-.++.-+++.
T Consensus       582 i~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~  650 (708)
T PF05804_consen  582 IELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY  650 (708)
T ss_pred             HHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            7777653  35566666777766664421111   1256788899999999999999999999887765

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=9.9e-05  Score=72.44  Aligned_cols=304  Identities=13%  Similarity=0.157  Sum_probs=180.6

Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHH
Q 009632          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVP  283 (530)
Q Consensus       205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~  283 (530)
                      +.+.+-++++|+.||-..++.+..+    .+......++|.+...+++++..||+.+.-++..+...+..-. ....++.
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~  177 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIE  177 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHH
Confidence            4566778899999999887776554    4445677899999999999999999999988888776522110 0112222


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHH
Q 009632          284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF  363 (530)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  363 (530)
                      -+  +..+.+|..+.+|.-.|...    +++.....+...+.+ +.+-+......+++.+-..+..-+  ......+..+
T Consensus       178 ~f--L~~e~DpsCkRNAFi~L~~~----D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i  248 (948)
T KOG1058|consen  178 SF--LLTEQDPSCKRNAFLMLFTT----DPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLANP--AEKARYIRCI  248 (948)
T ss_pred             HH--HHhccCchhHHHHHHHHHhc----CHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHH
Confidence            22  33677778877776555433    222222222222222 122233455666666666554222  2234566778


Q ss_pred             HHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 009632          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  442 (530)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~  442 (530)
                      +.+|...++.|+..|+.++..+...   +...+.-...+.+++ +.++..++.-.+.-+..+. ....+ ..+.++--++
T Consensus       249 ~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~-il~~l~mDvL  323 (948)
T KOG1058|consen  249 YNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEK-ILQGLIMDVL  323 (948)
T ss_pred             HHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHH-HHHHHHHHHH
Confidence            8888888888888887777666433   111122222233332 2334445555555555554 12222 2333444456


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc---cCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHH
Q 009632          443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  519 (530)
Q Consensus       443 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~---~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l  519 (530)
                      ..++.++-+||..++...-.++....-+...+.+-..+.+.-   +|.+...|+..++++..++..++.  +...++|.+
T Consensus       324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l  401 (948)
T KOG1058|consen  324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL  401 (948)
T ss_pred             HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence            778888888999888877666655432222222222222221   345667788888888888776653  467788888


Q ss_pred             HhhccCCCC
Q 009632          520 INASKDRYL  528 (530)
Q Consensus       520 ~~~l~D~~~  528 (530)
                      +.++.|..+
T Consensus       402 l~fisD~N~  410 (948)
T KOG1058|consen  402 LDFISDSNE  410 (948)
T ss_pred             HHHhccCCH
Confidence            888888654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.68  E-value=0.00039  Score=67.56  Aligned_cols=136  Identities=15%  Similarity=0.137  Sum_probs=98.8

Q ss_pred             CCChHHHHHHHHhhHHhhhhhc---hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHHH
Q 009632          369 DEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCM  442 (530)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~~~~~l~  442 (530)
                      -.+..++.+++..+..+..-+.   ...-...+...+++++.++...+...++.++.+++-.++   ..+.....+..+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            4567788888887777654332   111123556667777799999999999999999887766   3445566888999


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       443 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      +++.|+.+++|..+..+|..+.-...+....    ..-...+..+.+||++.|++.+...+.++.-
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence            9999999999999999998876544333221    1123334556799999999999999998753

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.66  E-value=2.5e-07  Score=68.28  Aligned_cols=70  Identities=20%  Similarity=0.143  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh--hHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 009632          159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL  229 (530)
Q Consensus       159 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l  229 (530)
                      ++.+.+++.++..++|++++||..|+++|.++++..+.+.  +.+++++.+.+++.|.++.||..| +.+..+
T Consensus        23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence            3667888999999999999999999999999999887743  356788999999999999999976 444443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=0.00054  Score=66.97  Aligned_cols=435  Identities=13%  Similarity=0.089  Sum_probs=226.1

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhH
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~   90 (530)
                      +..+..-|.|.|+..-.-|+..++.++..---+....+ +|.+....+..+-||+.+|.|+-.+-+.-.+-.....-..-
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~D-I~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~r  191 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADD-IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQR  191 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhh-hHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHH
Confidence            34455566677777767777777766422111222222 33333345567789999999986665532211111122223


Q ss_pred             HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhh--hHHHHHHHHhcCCc-------------cchhHHHHhHhhhhcCC
Q 009632           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVD--WYIPLVKRLAAGEW-------------FTARVSACGLFHIAYPS  155 (530)
Q Consensus        91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~l~~~~~-------------~~~r~~~~~~l~~l~~~  155 (530)
                      +..++.|.+-.|--++..-+..+++..+++....  ..+..+.++.....             +=...-.++++...-.-
T Consensus       192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~  271 (938)
T KOG1077|consen  192 IVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTP  271 (938)
T ss_pred             HHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCC
Confidence            4445667777777777777777888777643221  12222222221110             10111233333332111


Q ss_pred             CChHHHHHHHHHHHhhc---CCC--C-----hhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHH
Q 009632          156 APDILKTELRSIYTQLC---QDD--M-----PMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVE  224 (530)
Q Consensus       156 ~~~~~~~~l~~~l~~l~---~d~--~-----~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~  224 (530)
                      -.+..+..+.+.+..++   +++  +     ..++.+.+-..-.++..++. +.........+-+++++.+..+|-.|++
T Consensus       272 ~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLE  351 (938)
T KOG1077|consen  272 EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALE  351 (938)
T ss_pred             CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence            11123333333333332   211  1     12223333333344444444 3445667788888999999999999999


Q ss_pred             HHHHHhhhcCchhhhhccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632          225 GCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK  303 (530)
Q Consensus       225 ~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (530)
                      .+..++..-...+...+-...+...++ +++..+|+.++..|..++..-.    ...++.-+++.+...++.+|+..+--
T Consensus       352 sm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sireeivlK  427 (938)
T KOG1077|consen  352 SMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREEIVLK  427 (938)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            999888763322222223445555555 7888999999999999886432    34677788888888889999988877


Q ss_pred             HHHHHHhhCHH--HHHhhhhHhHhHh---ccCCcHHHHHHHHHHHHhhcccc-CHHHHHHhHHHHHHHhhcCC--ChHHH
Q 009632          304 VTKFCRILNPE--LAIQHILPCVKEL---SSDSSQHVRSALASVIMGMAPLL-GKDATIEQLLPIFLSLLKDE--FPDVR  375 (530)
Q Consensus       304 l~~~~~~~~~~--~~~~~l~~~l~~~---~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~d~--~~~vr  375 (530)
                      ..-+++.+..+  ++...++..+.-.   ..|.-|          ..+++.. ..+......-.-+...|+.+  .+.+-
T Consensus       428 vAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW----------~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mV  497 (938)
T KOG1077|consen  428 VAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVW----------YRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMV  497 (938)
T ss_pred             HHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHH----------HHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHH
Confidence            77777765443  3333333333211   112112          1112111 12222233333334444322  12233


Q ss_pred             HHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHH
Q 009632          376 LNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR  453 (530)
Q Consensus       376 ~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr  453 (530)
                      ..+.-.||++++.+..+.  -....+..+-+-+...+...|...+.+.-.+.....  .....+...+....+-.+.++.
T Consensus       498 KvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P--Ei~~~v~~vFq~~~n~~D~ElQ  575 (938)
T KOG1077|consen  498 KVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP--EIKSNVQKVFQLYSNLIDVELQ  575 (938)
T ss_pred             HhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh--hhhHHHHHHHHhhcccCCHHHH
Confidence            333344444444443211  112233344444444456677766666666655442  2234455666666666778888


Q ss_pred             HHHHHHHHH
Q 009632          454 DAAANNLKR  462 (530)
Q Consensus       454 ~~a~~~l~~  462 (530)
                      ..|++-+.-
T Consensus       576 qRa~EYLql  584 (938)
T KOG1077|consen  576 QRAVEYLQL  584 (938)
T ss_pred             HHHHHHHHH
Confidence            888886643

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.64  E-value=6.7e-07  Score=66.02  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCC
Q 009632          413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPH  488 (530)
Q Consensus       413 ~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~  488 (530)
                      .|..++.++..++..++...  +.+.++|.++.++.|+++.||..|++++..+.+..+....  ..++.+.+.++..|++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            47778888888887777543  4577888899999999999999999999999888765543  3678888888899999


Q ss_pred             hHHHHHHHHHHHHHh
Q 009632          489 YLYRMTILRAISLLA  503 (530)
Q Consensus       489 ~~vr~~a~~~l~~i~  503 (530)
                      ..||.+| +.+.++.
T Consensus        82 ~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   82 ENVRSAA-ELLDRLL   95 (97)
T ss_pred             hhHHHHH-HHHHHHh
Confidence            9998866 5555543

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.3e-05  Score=75.45  Aligned_cols=291  Identities=16%  Similarity=0.093  Sum_probs=164.1

Q ss_pred             ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCC
Q 009632          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS  254 (530)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~  254 (530)
                      +.-.--.++.++|-+-...+..     +..++.+.+.+. ++.||..+.-.++-.+-...    ...+...+.+.+..++
T Consensus       392 s~y~EGGalyAlGLIhA~hG~~-----~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa----~~eiYe~lKevLy~D~  462 (929)
T KOG2062|consen  392 SGYKEGGALYALGLIHANHGRG-----ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA----NEEIYEKLKEVLYNDS  462 (929)
T ss_pred             CCccccchhhhhhccccCcCcc-----HHHHHHHHHHhccchhhhhhhhhhccchhcccc----cHHHHHHHHHHHhccc
Confidence            3334446777777766655543     344445455443 55677766655554433222    2235566666666555


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcH
Q 009632          255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ  333 (530)
Q Consensus       255 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~  333 (530)
                      ...-.++.-.+|-+.-....    ...+.-+++.-.++. ..+.....-.+.  +..+|.+   +..-|++.+++.|+++
T Consensus       463 AvsGEAAgi~MGl~mlGt~~----~eaiedm~~Ya~ETQHeki~RGl~vGia--L~~ygrq---e~Ad~lI~el~~dkdp  533 (929)
T KOG2062|consen  463 AVSGEAAGIAMGLLMLGTAN----QEAIEDMLTYAQETQHEKIIRGLAVGIA--LVVYGRQ---EDADPLIKELLRDKDP  533 (929)
T ss_pred             hhhhhHHHHhhhhHhhCcCc----HHHHHHHHHHhhhhhHHHHHHHHHHhHH--HHHhhhh---hhhHHHHHHHhcCCch
Confidence            44445555555554433222    223333333333332 223332222222  1223332   3446677888889999


Q ss_pred             HHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC-CChH
Q 009632          334 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWR  412 (530)
Q Consensus       334 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-~~~~  412 (530)
                      -.|..-+-.+..--..-|.......+++   -..+|.+.+||.+|+-+++-++-.      .+..+|..+.++++ -|+.
T Consensus       534 ilR~~Gm~t~alAy~GTgnnkair~lLh---~aVsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~H  604 (929)
T KOG2062|consen  534 ILRYGGMYTLALAYVGTGNNKAIRRLLH---VAVSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPH  604 (929)
T ss_pred             hhhhhhHHHHHHHHhccCchhhHHHhhc---ccccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChh
Confidence            8887665444332222222222222222   236899999999999998876543      13455555555554 4799


Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChH
Q 009632          413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYL  490 (530)
Q Consensus       413 ~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~  490 (530)
                      ||..+..+++..+..-|...    -+..+..+..|++.-||..|+.+++-|.-...+...  ...+...+.+..+|++.+
T Consensus       605 VRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  605 VRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED  680 (929)
T ss_pred             hhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence            99999999998887777544    344555667899999999999999888766543321  134556666666666444


Q ss_pred             --HHHHHHH
Q 009632          491 --YRMTILR  497 (530)
Q Consensus       491 --vr~~a~~  497 (530)
                        ++..|+-
T Consensus       681 ~~aK~GAil  689 (929)
T KOG2062|consen  681 GMAKFGAIL  689 (929)
T ss_pred             HHHHHHHHH
Confidence              4444443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.63  E-value=0.00084  Score=67.64  Aligned_cols=236  Identities=14%  Similarity=0.103  Sum_probs=148.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHh--hCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc
Q 009632          291 DNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  368 (530)
Q Consensus       291 d~~~~vr~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  368 (530)
                      ...|..-..++.+++.+...  ..+......+-..+..+..|..+.+|..+++.+...++.---..+.+.++..+.++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas  540 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS  540 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence            34455555777777776665  2232222222223334455777788999988888877433334567788889999999


Q ss_pred             CCChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHH----hcCCChHHHHHHHHHHHHHHhhhC-hhhHHHHHHHHH
Q 009632          369 DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVEL----AEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALC  441 (530)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~----~~~~~~~~R~~~~~~l~~l~~~~~-~~~~~~~~~~~l  441 (530)
                      +.+.++-....+++..+++.=...  .....+.|.+..+    .+|  +.+-..+-.++..+.+... -+.....++|-+
T Consensus       541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~D--P~V~~~~qd~f~el~q~~~~~g~m~e~~iPsl  618 (1005)
T KOG2274|consen  541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSED--PQVASLAQDLFEELLQIAANYGPMQERLIPSL  618 (1005)
T ss_pred             cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            999999999999999888753221  1224556655443    344  3555555555555554221 122456789999


Q ss_pred             HHHhcCCc----HHHHHHHHHHHHHHHHHhChhH---HhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHhhhcC------
Q 009632          442 MQWLQDKV----YSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMG------  507 (530)
Q Consensus       442 ~~~l~d~~----~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~i~~~~~------  507 (530)
                      .+.+.-+.    +.....++..|..+.++-.++.   ......|.+.++. ...+...-+++-+++..++..-.      
T Consensus       619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~  698 (1005)
T KOG2274|consen  619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTW  698 (1005)
T ss_pred             HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhh
Confidence            99887655    5677788888888888765542   2256677777764 44566777888888888766521      


Q ss_pred             ---hHHHHhhHHHHHHhhccCCCC
Q 009632          508 ---SEITCSRLLPVVINASKDRYL  528 (530)
Q Consensus       508 ---~~~~~~~~~p~l~~~l~D~~~  528 (530)
                         +.....+++-.+-++|+-++.
T Consensus       699 ~~e~g~~~~yImqV~sqLLdp~~s  722 (1005)
T KOG2274|consen  699 HDEPGHNLWYIMQVLSQLLDPETS  722 (1005)
T ss_pred             ccCCCccHHHHHHHHHHHcCCccc
Confidence               111133677777766665543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.63  E-value=3.5e-06  Score=82.40  Aligned_cols=231  Identities=15%  Similarity=0.244  Sum_probs=178.0

Q ss_pred             CcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc-CC
Q 009632          292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DE  370 (530)
Q Consensus       292 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~  370 (530)
                      .++.-+...++.|..+...++...+...++|.+.+.+.+.  ..--...-.+..+++......|..+++|.+...++ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            4556788889999999999998888899999998765432  22222333445556666667788899999998888 55


Q ss_pred             ChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHH-hcCCc
Q 009632          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKV  449 (530)
Q Consensus       371 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~d~~  449 (530)
                      ...++...++.+..+.+....+.+.+.++|.|....++.+..+...++..+..+++.++-.+..+.++|-+.++ ++...
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            67788999999999999999999999999999999999999999999999999999999888889999998886 45677


Q ss_pred             HHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC--hHHHHhhHHHHHHhhccC
Q 009632          450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKD  525 (530)
Q Consensus       450 ~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~~~p~l~~~l~D  525 (530)
                      ..|+..++-|++.+.+.+......+.+.| +.+..+-++..+..+...+...+.-...  .+...++++|.+.-+..-
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lp-i~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~  519 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDELLP-ILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA  519 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence            88999999999999988765444444444 4445556666777777777776654332  366677788877665543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.58  E-value=5.7e-05  Score=70.21  Aligned_cols=271  Identities=12%  Similarity=0.057  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHhh-hhHhHh-H--
Q 009632          256 RVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQH-ILPCVK-E--  326 (530)
Q Consensus       256 ~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~-l~~~l~-~--  326 (530)
                      .+|..+.+.+..++.++|-.. +.-.+...+-..+.+..|.++..+...+..+....+.+    .+... ....+- .  
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l  349 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML  349 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence            477778888888887766321 12234445555677889999999999998887765522    11111 111010 0  


Q ss_pred             ------hccC-CcHHHHHHHHHHHHhhcccc--CHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhchhH---
Q 009632          327 ------LSSD-SSQHVRSALASVIMGMAPLL--GKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDL---  393 (530)
Q Consensus       327 ------~~~d-~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~---  393 (530)
                            ...| .....+.+.+..+..+...-  +-+.-.....+.+..-..|. +.-+|.+|..+++.+.-.-+...   
T Consensus       350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~  429 (728)
T KOG4535|consen  350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVI  429 (728)
T ss_pred             cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHH
Confidence                  1111 12234455555555543221  00111123444555444443 44588888888877654433322   


Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-----hhhHHHHHHHHHH----HHh---cCCcHHHHHHHHHHHH
Q 009632          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-----VGFFDDKLGALCM----QWL---QDKVYSIRDAAANNLK  461 (530)
Q Consensus       394 ~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-----~~~~~~~~~~~l~----~~l---~d~~~~Vr~~a~~~l~  461 (530)
                      +.......+...+.|+....|..+..+++.+...+-     .+.+...+...++    ...   .-....||..+.+.||
T Consensus       430 fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLg  509 (728)
T KOG4535|consen  430 FVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALG  509 (728)
T ss_pred             HHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence            122333445556678888899999999999887652     2223333322222    211   1234578999999999


Q ss_pred             HHHHHhChhH--HhhhhHH-HHHh----hccCCChHHHHHHHHHHHHHhhhcC----hHHHHhhHHHHHHhhccCC
Q 009632          462 RLAEEFGPEW--AMQHITP-QVLE----MINNPHYLYRMTILRAISLLAPVMG----SEITCSRLLPVVINASKDR  526 (530)
Q Consensus       462 ~l~~~~~~~~--~~~~i~~-~l~~----~~~d~~~~vr~~a~~~l~~i~~~~~----~~~~~~~~~p~l~~~l~D~  526 (530)
                      .+.+.+.+-.  ...+++. .+.+    .....+..||=+++++++++.++-.    ..+..+.++|.|..++.|.
T Consensus       510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~  585 (728)
T KOG4535|consen  510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC  585 (728)
T ss_pred             hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh
Confidence            8887654210  0011111 1222    2334588899999999999987522    2345677888887776653

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=0.00056  Score=60.68  Aligned_cols=166  Identities=13%  Similarity=0.122  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH--------HHHHHHHHHHhhcCCCCh
Q 009632          106 AVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--------LKTELRSIYTQLCQDDMP  177 (530)
Q Consensus       106 a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~--------~~~~l~~~l~~l~~d~~~  177 (530)
                      ++.+|.++.+...+..+...++|.+..-+..++..++..+|..++.+.+.+...        .-.++++.+..+...++.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            778888888888777777888999998888888899999999999988877642        125688888888889999


Q ss_pred             hHHHHHHHHHHHHHhhhcc--hhhHHHHHH--HHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhc
Q 009632          178 MVRRSAASNLGKFAATVEP--AHLKTDIMS--IFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFS  250 (530)
Q Consensus       178 ~vR~~a~~~l~~l~~~~~~--~~~~~~l~~--~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~  250 (530)
                      +|.+++.+.+..++..-..  ..|.+.+.+  .+.++..--++-+|-...+.+..+...-+.   +...+.++..+..-+
T Consensus       143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl  222 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL  222 (524)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence            9999999999888753211  111111111  111222223445566556655555443222   111223444443333


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHH
Q 009632          251 Q-DKSWRVRYMVANQLYELCEA  271 (530)
Q Consensus       251 ~-d~~~~vr~~~~~~l~~l~~~  271 (530)
                      + .++.-|+..+.+....++..
T Consensus       223 kGteDtLVianciElvteLaet  244 (524)
T KOG4413|consen  223 KGTEDTLVIANCIELVTELAET  244 (524)
T ss_pred             cCCcceeehhhHHHHHHHHHHH
Confidence            3 24555666666666666543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.52  E-value=0.00022  Score=69.63  Aligned_cols=224  Identities=19%  Similarity=0.155  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCC---CChHHHHHHHHHHHhhcCCCC
Q 009632          104 DKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDM  176 (530)
Q Consensus       104 ~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~---~~~~~~~~l~~~l~~l~~d~~  176 (530)
                      ...++-+.+++..+++.    ++...+...+.+....++..||.-++++++.+...   .++...+.+...+..-+.|..
T Consensus        60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre  139 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE  139 (892)
T ss_pred             HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC
Confidence            34444555666655542    23333444445555667888999999999988763   345577888888888889999


Q ss_pred             hhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCH
Q 009632          177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSW  255 (530)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~  255 (530)
                      |.||..|+.+|..+-..-.++.  -.+...+..++ +|++++||.+|+..+..          .+.-+|++.+-..|-+.
T Consensus       140 p~VRiqAv~aLsrlQ~d~~dee--~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~  207 (892)
T KOG2025|consen  140 PNVRIQAVLALSRLQGDPKDEE--CPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSG  207 (892)
T ss_pred             chHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhH
Confidence            9999999999999875322221  23445555444 68899999998877643          34467888888999888


Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHH
Q 009632          256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV  335 (530)
Q Consensus       256 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~v  335 (530)
                      .+|+.+...+..=...-.  ....+-+-.+...+.|.+..|+.++..++..=.-....    ..++..+..+--+.+.+|
T Consensus       208 anRrlvY~r~lpkid~r~--lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d----gni~ElL~~ldvsnss~v  281 (892)
T KOG2025|consen  208 ANRRLVYERCLPKIDLRS--LSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD----GNILELLERLDVSNSSEV  281 (892)
T ss_pred             HHHHHHHHHhhhhhhhhh--hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc----ccHHHHHHHhccccchHH
Confidence            899888765433222111  11235566778889999999999998887653221111    234444555444455577


Q ss_pred             HHHHHHHHHh
Q 009632          336 RSALASVIMG  345 (530)
Q Consensus       336 r~~~~~~l~~  345 (530)
                      +..+++++-.
T Consensus       282 avk~lealf~  291 (892)
T KOG2025|consen  282 AVKALEALFS  291 (892)
T ss_pred             HHHHHHHHHH
Confidence            7777766654

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.51  E-value=0.0018  Score=65.40  Aligned_cols=151  Identities=15%  Similarity=0.219  Sum_probs=105.1

Q ss_pred             cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH---HHHHHHHHHH-
Q 009632          368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQ-  443 (530)
Q Consensus       368 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~---~~~~~~~l~~-  443 (530)
                      .|..+.+|..|+.++...++.---....+.++..+..+..+.+..+-...+++++.+++. ++++.   ...+.|.++. 
T Consensus       501 ~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~l  579 (1005)
T KOG2274|consen  501 MDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINL  579 (1005)
T ss_pred             cCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHH
Confidence            366677888888887777643222234467888888888888888999999999988763 44432   2445555544 


Q ss_pred             ---HhcCCcHHHHHHHHHHHHHHHHHh---ChhHHhhhhHHHHHhhccCCC----hHHHHHHHHHHHHHhhhcCh---HH
Q 009632          444 ---WLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPH----YLYRMTILRAISLLAPVMGS---EI  510 (530)
Q Consensus       444 ---~l~d~~~~Vr~~a~~~l~~l~~~~---~~~~~~~~i~~~l~~~~~d~~----~~vr~~a~~~l~~i~~~~~~---~~  510 (530)
                         ..+|+  .|-..+-.++..+.+..   |+.  ++..+|.+.+.++-++    ......++..+..+.+.-++   ..
T Consensus       580 F~k~s~DP--~V~~~~qd~f~el~q~~~~~g~m--~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~  655 (1005)
T KOG2274|consen  580 FLKYSEDP--QVASLAQDLFEELLQIAANYGPM--QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL  655 (1005)
T ss_pred             HHHhcCCc--hHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH
Confidence               44454  78888888887777643   332  4778999998877654    56677888888888887653   44


Q ss_pred             HHhhHHHHHHhhc
Q 009632          511 TCSRLLPVVINAS  523 (530)
Q Consensus       511 ~~~~~~p~l~~~l  523 (530)
                      +..+.+|.+.++.
T Consensus       656 l~~~~FpaVak~t  668 (1005)
T KOG2274|consen  656 LICYAFPAVAKIT  668 (1005)
T ss_pred             HHHHHhHHhHhhe
Confidence            6788888877643

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.50  E-value=0.0019  Score=65.51  Aligned_cols=183  Identities=14%  Similarity=0.041  Sum_probs=123.5

Q ss_pred             HHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---------
Q 009632          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---------  196 (530)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---------  196 (530)
                      +..++..-+-|+...+|..|...++.+....+...-..++..+...+.|+-..+++++..++..-...+..         
T Consensus       473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~  552 (1529)
T KOG0413|consen  473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL  552 (1529)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence            44455555667778888888877776655444444455666666666666666666655444332211110         


Q ss_pred             ------------------hhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHH
Q 009632          197 ------------------AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRV  257 (530)
Q Consensus       197 ------------------~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v  257 (530)
                                        ..+...++..+...+. |+...||..|...+.+...++..+...+.++-++..+|.|+-..|
T Consensus       553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv  632 (1529)
T KOG0413|consen  553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV  632 (1529)
T ss_pred             cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence                              1223446666666666 888889999999999999988887777778999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632          258 RYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC  308 (530)
Q Consensus       258 r~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  308 (530)
                      |..++..|+.+...-+.-. ....-+..+..+++|.+..|...|.+.+..+.
T Consensus       633 rk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l  684 (1529)
T KOG0413|consen  633 RKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVL  684 (1529)
T ss_pred             HHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            9999999998765422211 12233455667778888888888888655544

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.50  E-value=1.6e-05  Score=67.31  Aligned_cols=112  Identities=21%  Similarity=0.191  Sum_probs=84.3

Q ss_pred             chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 009632          215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA  294 (530)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  294 (530)
                      ++.||..++.+++.++..++  ...+..+|.+...+.|+++.||..++.++..+... +.-.....++..+..++.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence            36788888888888887776  34566788888888999999999988888887753 1112244566778888899999


Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632          295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (530)
Q Consensus       295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~  329 (530)
                      +||..|...+..+....+++.+.+.+.+.+..+..
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~  112 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN  112 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence            99999999999998876666665666666655543

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.50  E-value=1.1e-06  Score=69.47  Aligned_cols=108  Identities=18%  Similarity=0.081  Sum_probs=86.2

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---ChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh--
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--  470 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--  470 (530)
                      ..+++.+.+++.+++|.+|..++.++..++...   ........++|.+.+++.|+++.||..++.+++.++...+..  
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            357788888888889999999999999988642   222233478899999999999999999999999998754321  


Q ss_pred             -HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632          471 -WAMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (530)
Q Consensus       471 -~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~  503 (530)
                       .....+++.+.+.+++++..+|..+++++.+++
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             122457999999999999999999999999875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.47  E-value=0.00011  Score=71.75  Aligned_cols=281  Identities=16%  Similarity=0.172  Sum_probs=154.9

Q ss_pred             ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchh
Q 009632          138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS  217 (530)
Q Consensus       138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~  217 (530)
                      +...+..++++|...++.++ +..++-+..++.+|+|.+..||..|+..|..+++.  ...+.+.+.+.|.+++..+++.
T Consensus        35 ~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kvaDvL~QlL~tdd~~  111 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKVADVLVQLLQTDDPV  111 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HH
T ss_pred             CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHHHHHHHHHHhcccHH
Confidence            45678888899988888765 46677889999999999999999999999999985  3456788999999999988887


Q ss_pred             HHHHHHHHHHHHhhhcCchhhhhccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhCCccc------ccchHHHHHHhc
Q 009632          218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPT------RMDLVPAYVRLL  289 (530)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l  289 (530)
                      .+..+-.+|..+...-++..    +-..+....  ...+..+|.-+.+.|..-...++.+..      .+.++..+...+
T Consensus       112 E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL  187 (556)
T PF05918_consen  112 ELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL  187 (556)
T ss_dssp             HHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence            77777888887776654432    222222222  234567999988888655544444332      235667777788


Q ss_pred             CCCcH-HH--HHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-C-----CcH----HHHHHHHHHHHhhccccCHHHHH
Q 009632          290 RDNEA-EV--RIAAAGKVTKFCRILNPELAIQHILPCVKELSS-D-----SSQ----HVRSALASVIMGMAPLLGKDATI  356 (530)
Q Consensus       290 ~d~~~-~v--r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d-----~~~----~vr~~~~~~l~~l~~~~~~~~~~  356 (530)
                      .|-.. +.  -...+.++..+.. ..+....+.+++.+.+.+. |     .+.    +....+-.++..+........|.
T Consensus       188 ~DVTaeEF~l~m~lL~~lk~~~~-~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv  266 (556)
T PF05918_consen  188 QDVTAEEFELFMSLLKSLKIYGG-KQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFV  266 (556)
T ss_dssp             TT--HHHHHHHHHHHHTSGG----GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHH
T ss_pred             HhccHHHHHHHHHHHHhCccccc-cCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHH
Confidence            77332 21  1112222222111 1112233556666654432 1     112    22233333444444444445555


Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC------C----ChHHHHHHHHHHHHHHh
Q 009632          357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------R----HWRVRLAIIEYIPLLAS  426 (530)
Q Consensus       357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~------~----~~~~R~~~~~~l~~l~~  426 (530)
                      ..+..-++..+.+-.+..|...+..++.++...|... ...++|.+...+..      .    ++..-++.+.++..++.
T Consensus       267 ~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~  345 (556)
T PF05918_consen  267 NYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLAR  345 (556)
T ss_dssp             HHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhh
Confidence            5555555556666677889999999999998888654 34555555554421      1    34455555555555555


Q ss_pred             h
Q 009632          427 Q  427 (530)
Q Consensus       427 ~  427 (530)
                      .
T Consensus       346 k  346 (556)
T PF05918_consen  346 K  346 (556)
T ss_dssp             T
T ss_pred             h
Confidence            4

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5.5e-05  Score=73.99  Aligned_cols=282  Identities=17%  Similarity=0.098  Sum_probs=179.0

Q ss_pred             HHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHH
Q 009632          145 ACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE  224 (530)
Q Consensus       145 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~  224 (530)
                      +...++.+...-+....+.++..+.   +.+++.||+.+|..+|-..-.-.+    ..++..+.+.+..++.---++|..
T Consensus       399 alyAlGLIhA~hG~~~~~yL~~~Lk---~~~~e~v~hG~cLGlGLa~mGSa~----~eiYe~lKevLy~D~AvsGEAAgi  471 (929)
T KOG2062|consen  399 ALYALGLIHANHGRGITDYLLQQLK---TAENEVVRHGACLGLGLAGMGSAN----EEIYEKLKEVLYNDSAVSGEAAGI  471 (929)
T ss_pred             hhhhhhccccCcCccHHHHHHHHHH---hccchhhhhhhhhhccchhccccc----HHHHHHHHHHHhccchhhhhHHHH
Confidence            3444444444444433333333333   234788999999988876543322    456677777777666656666666


Q ss_pred             HHHHHhhhcCchhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632          225 GCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK  303 (530)
Q Consensus       225 ~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (530)
                      +++-+.-......    .+.-+.....+ .+.++.+..+-.|+-+.-  |.+   +..-|++.+++.|.+|-.|...+.+
T Consensus       472 ~MGl~mlGt~~~e----aiedm~~Ya~ETQHeki~RGl~vGiaL~~y--grq---e~Ad~lI~el~~dkdpilR~~Gm~t  542 (929)
T KOG2062|consen  472 AMGLLMLGTANQE----AIEDMLTYAQETQHEKIIRGLAVGIALVVY--GRQ---EDADPLIKELLRDKDPILRYGGMYT  542 (929)
T ss_pred             hhhhHhhCcCcHH----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHh--hhh---hhhHHHHHHHhcCCchhhhhhhHHH
Confidence            7766654332221    23323333333 345566655554444332  221   3455778889999999999999888


Q ss_pred             HHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC-CChHHHHHHHHhh
Q 009632          304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKL  382 (530)
Q Consensus       304 l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l  382 (530)
                      +.--.-..|.......+++.-   +.|.+..||+++...++-++-.      .+..+|-...+|.+ -++.||..++-+|
T Consensus       543 ~alAy~GTgnnkair~lLh~a---VsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~AL  613 (929)
T KOG2062|consen  543 LALAYVGTGNNKAIRRLLHVA---VSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMAL  613 (929)
T ss_pred             HHHHHhccCchhhHHHhhccc---ccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHHH
Confidence            876555555554444444443   5789999999999998877532      12334556666654 4899999999999


Q ss_pred             HHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHH
Q 009632          383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDA  455 (530)
Q Consensus       383 ~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~  455 (530)
                      +-.|..-|.    +..+..|..+.+|+..-||+.|+-+++.+.-......  -...+...+.+.+.|+...+-..
T Consensus       614 GIaCAGtG~----~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK  684 (929)
T KOG2062|consen  614 GIACAGTGL----KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAK  684 (929)
T ss_pred             hhhhcCCCc----HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHH
Confidence            999887774    3456667777889999999999999987765544322  12446666777778877654433

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.45  E-value=2e-06  Score=63.58  Aligned_cols=86  Identities=23%  Similarity=0.345  Sum_probs=68.5

Q ss_pred             HHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhH
Q 009632          399 LPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  477 (530)
Q Consensus       399 ~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~  477 (530)
                      +|.|.+.+ +++++.+|..++.+++.+    +    ....+|.+..+++|+++.||..|+.+++.+.        ....+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----G----DPEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----T----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----C----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHH
Confidence            35666766 888999999999999843    2    3367888999999999999999999999873        24578


Q ss_pred             HHHHhhccC-CChHHHHHHHHHHH
Q 009632          478 PQVLEMINN-PHYLYRMTILRAIS  500 (530)
Q Consensus       478 ~~l~~~~~d-~~~~vr~~a~~~l~  500 (530)
                      +.+.+++.+ ++..+|..|+++|+
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhcC
Confidence            888887766 56677999998875

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=0.0024  Score=63.83  Aligned_cols=417  Identities=16%  Similarity=0.125  Sum_probs=217.0

Q ss_pred             CCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccc-cCCC---c
Q 009632            6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIP-YVGG---V   81 (530)
Q Consensus         6 ~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~-~~~~---~   81 (530)
                      ..++.+...+.+--++|+..|+.|.+.|.+....   ....-.++..+.+- ..++.+|.+++..+.+..+ ....   .
T Consensus         2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q---~~y~l~lL~Lv~~~-~~d~~~r~aaav~fKN~iKr~W~~~~~~   77 (960)
T KOG1992|consen    2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEGQ---QNYPLLLLNLVANG-QQDPQIRVAAAVYFKNYIKRNWIPAEDS   77 (960)
T ss_pred             ccHHHHHHHHHhcCCCCCccCchHHHHHHHhccC---CCchHHHHHHHhcc-CcChhHHHHHHHHHHHHHHhccCcCCCC
Confidence            3456677777777789999999999988765322   11111233333321 1267899999999987766 2221   1


Q ss_pred             ------cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCc----cchhHHHHhHhhh
Q 009632           82 ------EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEW----FTARVSACGLFHI  151 (530)
Q Consensus        82 ------~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~----~~~r~~~~~~l~~  151 (530)
                            .....+-..+..+.-.....++..-.+++.-+++.--++. ++.++|.+..-....+    ..++..+..++..
T Consensus        78 ~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~k-WptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr  156 (960)
T KOG1992|consen   78 PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDK-WPTLLPDLVARLSSGDFNVINGVLVTAHSIFKR  156 (960)
T ss_pred             ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchh-hHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence                  1123333344444445557788888889999987544443 3445554444333332    2344445555544


Q ss_pred             hcCCCChH-HH---HHHH--------HHHH---hhc--CCCChhHHHHHHHHHHHHHhhhc-------c---hhhHHHHH
Q 009632          152 AYPSAPDI-LK---TELR--------SIYT---QLC--QDDMPMVRRSAASNLGKFAATVE-------P---AHLKTDIM  204 (530)
Q Consensus       152 l~~~~~~~-~~---~~l~--------~~l~---~l~--~d~~~~vR~~a~~~l~~l~~~~~-------~---~~~~~~l~  204 (530)
                      .-.....+ .+   +.++        .++.   +++  .+.+...-......+--+++.+-       +   |...+..+
T Consensus       157 ~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM  236 (960)
T KOG1992|consen  157 YRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWM  236 (960)
T ss_pred             cCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHH
Confidence            33322221 11   1111        1222   222  12222211111122222222111       1   22334455


Q ss_pred             HHHHHhhc--------CCc-----hhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCCCCHHHH-----HHHHHH
Q 009632          205 SIFEDLTQ--------DDQ-----DSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVR-----YMVANQ  264 (530)
Q Consensus       205 ~~l~~~~~--------d~~-----~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr-----~~~~~~  264 (530)
                      +.+.+++.        |++     ..+|....+.+.-.+..+.++  .+.+.++...-.++.+.++..|     ..+.+.
T Consensus       237 ~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~F  316 (960)
T KOG1992|consen  237 GAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQF  316 (960)
T ss_pred             HHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            66666554        221     234555555555555444432  2334444444445444332222     222333


Q ss_pred             HHHHHHH------hCC-----------------------cccccchHHHHHHhcCCCcH-HHHHHHHHHHHHHHHhhCHH
Q 009632          265 LYELCEA------VGP-----------------------EPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNPE  314 (530)
Q Consensus       265 l~~l~~~------~~~-----------------------~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~  314 (530)
                      |..+++.      +..                       +.+.+.-+.++.+-++-.+- .=|.+|+.-+..+++.+...
T Consensus       317 Lt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~  396 (960)
T KOG1992|consen  317 LTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ  396 (960)
T ss_pred             HHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch
Confidence            3333221      000                       11112233444444443332 34778888888998887432


Q ss_pred             HHHhhhhHhHhH----hcc--CCcHHHHHHHHHHHHhhcccc--------------C-HHHHHHhHHHHHHHhhcCCChH
Q 009632          315 LAIQHILPCVKE----LSS--DSSQHVRSALASVIMGMAPLL--------------G-KDATIEQLLPIFLSLLKDEFPD  373 (530)
Q Consensus       315 ~~~~~l~~~l~~----~~~--d~~~~vr~~~~~~l~~l~~~~--------------~-~~~~~~~l~~~l~~~l~d~~~~  373 (530)
                       ..+.+-..+..    ..+  +.+|+-+..++..+..++...              + .+++...++|.+..-=..+.+-
T Consensus       397 -vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pi  475 (960)
T KOG1992|consen  397 -VTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPI  475 (960)
T ss_pred             -hHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccc
Confidence             11222222333    333  457888888887777665321              1 2456677777666533345677


Q ss_pred             HHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (530)
Q Consensus       374 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~  429 (530)
                      ++..+++.+-.+-+.+|.+.. -.++|.+.+.++.+.+-+-.-|..++..+....+
T Consensus       476 lka~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre  530 (960)
T KOG1992|consen  476 LKADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRE  530 (960)
T ss_pred             hhhcccceeeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhcccccc
Confidence            888888877777777777765 4689999999999888888888888887765433

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.44  E-value=2.9e-05  Score=68.87  Aligned_cols=180  Identities=14%  Similarity=0.122  Sum_probs=123.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCC-cc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632          252 DKSWRVRYMVANQLYELCEAVGP-EP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (530)
Q Consensus       252 d~~~~vr~~~~~~l~~l~~~~~~-~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~  329 (530)
                      ..++.+++.+..+++..+..-.. +. ..-..++.+..++.++++.+|..|+.++..++.........+..++.+.+...
T Consensus        24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~  103 (254)
T PF04826_consen   24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV  103 (254)
T ss_pred             CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence            34566666666666654432111 11 11246788899999999999999999999887766555444555666654332


Q ss_pred             C--CcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh--chhHHHhhHHHHHHHH
Q 009632          330 D--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVEL  405 (530)
Q Consensus       330 d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~  405 (530)
                      .  .+..++.+.++.+..+.-.-.........+|.++.+|..++..+|..+++.+..+...-  ..+.+..+.++.+..+
T Consensus       104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L  183 (254)
T PF04826_consen  104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL  183 (254)
T ss_pred             cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence            2  35578888888888886443333445566788899999999999999999999887542  2333445566777777


Q ss_pred             hcCC-ChHHHHHHHHHHHHHHhhhChh
Q 009632          406 AEDR-HWRVRLAIIEYIPLLASQLGVG  431 (530)
Q Consensus       406 ~~~~-~~~~R~~~~~~l~~l~~~~~~~  431 (530)
                      +... +..+...++.++..+...++++
T Consensus       184 f~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  184 FNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             HccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            7665 5677888888888888777654

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=0.00011  Score=71.59  Aligned_cols=166  Identities=19%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHhhhcC--chhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccch
Q 009632          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL  281 (530)
Q Consensus       204 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  281 (530)
                      +..+.+....++..||-.+...+..+....+  ++...+.+...+..-+.|..+.||..|..+|..+..--+++  ...+
T Consensus        87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--e~~v  164 (892)
T KOG2025|consen   87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--ECPV  164 (892)
T ss_pred             HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--cccH
Confidence            3333333444444455555555554444222  12333444444444445555555555555554443211111  1122


Q ss_pred             HHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHH-hhccccCHHHHHHhH
Q 009632          282 VPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIM-GMAPLLGKDATIEQL  359 (530)
Q Consensus       282 ~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l  359 (530)
                      ...+..++ +|++++||.+++.++..-          +.-.|.+.+-..|-+.-+|..+.+.+. .+ ...  ....++-
T Consensus       165 ~n~l~~liqnDpS~EVRRaaLsnI~vd----------nsTlp~IveRarDV~~anRrlvY~r~lpki-d~r--~lsi~kr  231 (892)
T KOG2025|consen  165 VNLLKDLIQNDPSDEVRRAALSNISVD----------NSTLPCIVERARDVSGANRRLVYERCLPKI-DLR--SLSIDKR  231 (892)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHhhccC----------cccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhh--hhhHHHH
Confidence            33333333 455666666555543321          233455555555555555544433221 11 100  0011233


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHH
Q 009632          360 LPIFLSLLKDEFPDVRLNIISKLDQ  384 (530)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~l~~  384 (530)
                      .-++...|.|.+..||.++.+.+..
T Consensus       232 v~LlewgLnDRe~sVk~A~~d~il~  256 (892)
T KOG2025|consen  232 VLLLEWGLNDREFSVKGALVDAILS  256 (892)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            3444455556666666655555433

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.43  E-value=0.00013  Score=72.56  Aligned_cols=411  Identities=14%  Similarity=0.075  Sum_probs=219.9

Q ss_pred             chhHHHhhhcccchHHHHHHHHHHHHHHhhcCh-hhhhhhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChHHHHHH
Q 009632           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTEL  164 (530)
Q Consensus        87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~l  164 (530)
                      +-|+|..+ .+++..||.+.++.+..+-+.+.. ..+.=-+..++...-+.+ +..+|..+...+....+.++.+.+.++
T Consensus        25 L~plLlkl-~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~l  103 (501)
T PF13001_consen   25 LPPLLLKL-ASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERREL  103 (501)
T ss_pred             HHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence            33444444 456778999988888888877665 222222445555555555 567888888888888888888888888


Q ss_pred             HHHHHhhcCCCChh---HHHHHHHHHHHHHhhhcch-----hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh------
Q 009632          165 RSIYTQLCQDDMPM---VRRSAASNLGKFAATVEPA-----HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG------  230 (530)
Q Consensus       165 ~~~l~~l~~d~~~~---vR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~------  230 (530)
                      +|.+++.++.....   .....+..+..+++.....     ......-+.-...+.|.  ............+.      
T Consensus       104 lP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~l~~~~  181 (501)
T PF13001_consen  104 LPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDF--CDDVFLAPWFSKFLLLQPNR  181 (501)
T ss_pred             HHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcch--HHHHHcchhhcccccccccc
Confidence            88888877632211   1111222222222222110     00000000000011110  00000000000000      


Q ss_pred             ----hhcCchhhhhccHHH--HHHhcCCCC-HHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhcCCCcHHHHHHHHH
Q 009632          231 ----KLLEPQDCVAHILPV--IVNFSQDKS-WRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAG  302 (530)
Q Consensus       231 ----~~~~~~~~~~~~~~~--l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~  302 (530)
                          ..+...  ....+..  ......... ..-+....+.=-.+.+.+..... .+..++.++-.-.|+..+|...|-.
T Consensus       182 ~~~~pgl~~~--~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~  259 (501)
T PF13001_consen  182 AYACPGLSPA--DPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAED  259 (501)
T ss_pred             ccCCCCCCCC--CCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHH
Confidence                000000  0001111  111111110 00111121111222222222222 2245556666667888899999988


Q ss_pred             HHHHHHHhhCHHHHHhhhhHhHh--Hhcc-----CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCC--ChH
Q 009632          303 KVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPD  373 (530)
Q Consensus       303 ~l~~~~~~~~~~~~~~~l~~~l~--~~~~-----d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~  373 (530)
                      .|..+...+....+...++..+.  ....     --++.+|..++..+..=   .......+.++.++...+..+  +..
T Consensus       260 ~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS---~~Aa~~~~~~~~i~~~~l~~~~~~~k  336 (501)
T PF13001_consen  260 LLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS---VIAATSFPNILQIVFDGLYSDNTNSK  336 (501)
T ss_pred             HHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh---HHHHhCCccHHHHHhccccCCccccc
Confidence            88888877777666677777766  2111     13457777766665542   111223355667777777776  667


Q ss_pred             HHHHHHHhh---HHhhhhhchhHH---HhhHHHHHHHHhc--------CCChHHHHHHHHHHHHHHhhhChhhHH-HHHH
Q 009632          374 VRLNIISKL---DQVNQVIGIDLL---SQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGVGFFD-DKLG  438 (530)
Q Consensus       374 vr~~a~~~l---~~l~~~~~~~~~---~~~l~~~l~~~~~--------~~~~~~R~~~~~~l~~l~~~~~~~~~~-~~~~  438 (530)
                      +|..++..+   ......++...+   .+.+...+.....        ..+...|..+.+++|.+++....-+.. -.++
T Consensus       337 lk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li  416 (501)
T PF13001_consen  337 LKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLI  416 (501)
T ss_pred             cchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHH
Confidence            888888888   777666665432   2233333333332        235789999999999999876654322 3466


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH-----hhhhHHHHH-hhccCCChHHHHHHHHHHHHHhhh
Q 009632          439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA-----MQHITPQVL-EMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       439 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-----~~~i~~~l~-~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      ..++.-+.++..++|.+.-++|+.+...+.....     ....+..+. ....+....+|-.|+++...+.+.
T Consensus       417 ~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf  489 (501)
T PF13001_consen  417 EFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPF  489 (501)
T ss_pred             HHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCc
Confidence            6677777899999999999999999988854321     111222222 233455667888888888877653

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.43  E-value=7.4e-05  Score=64.18  Aligned_cols=91  Identities=18%  Similarity=0.158  Sum_probs=68.6

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhChhHHhh
Q 009632          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEWAMQ  474 (530)
Q Consensus       397 ~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~~~~  474 (530)
                      .-+..+.+.+.+++...|..+..++|++-.        +.-+|.+.+.|.|  .++.||-.|+++||.|+.        +
T Consensus       187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e  250 (289)
T KOG0567|consen  187 EAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------E  250 (289)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------H
Confidence            344556666777788899998888888743        2345666666655  557899999999998762        4


Q ss_pred             hhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632          475 HITPQVLEMINNPHYLYRMTILRAISLLA  503 (530)
Q Consensus       475 ~i~~~l~~~~~d~~~~vr~~a~~~l~~i~  503 (530)
                      ..++.|.+.++|+..-||+.+.-++....
T Consensus       251 ~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  251 DCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            56888888999999999999888887654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.42  E-value=2e-06  Score=63.55  Aligned_cols=85  Identities=31%  Similarity=0.403  Sum_probs=58.3

Q ss_pred             HHHHHhh-cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHH
Q 009632          361 PIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  439 (530)
Q Consensus       361 ~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~  439 (530)
                      |.+.+.+ +|+++.+|..++..++.+..        +..+|.+..+++|+++.+|..++.+++.+.        .+..++
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~   65 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIP   65 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHH
Confidence            5566666 77778888888777775422        356777777778888888888888887763        234566


Q ss_pred             HHHHHhcC-CcHHHHHHHHHHHH
Q 009632          440 LCMQWLQD-KVYSIRDAAANNLK  461 (530)
Q Consensus       440 ~l~~~l~d-~~~~Vr~~a~~~l~  461 (530)
                      .+.+.+.| +...||..|+.+||
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            67676655 44556887777765

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.42  E-value=0.0015  Score=66.60  Aligned_cols=370  Identities=16%  Similarity=0.146  Sum_probs=207.0

Q ss_pred             hcccchHHHHHHHHHHHHHHhhcChh--hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC-hH--HHHHHHHHHH
Q 009632           95 CTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DI--LKTELRSIYT  169 (530)
Q Consensus        95 ~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~-~~--~~~~l~~~l~  169 (530)
                      +...+.-.| .++..|.+++....-+  .....+++.+..+++.++......+..++..+.-... +.  ....+++.+.
T Consensus       259 ~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~  337 (708)
T PF05804_consen  259 IRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLL  337 (708)
T ss_pred             HHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence            333333333 5566677777654332  2344467777777777777777777788777664422 11  3456888999


Q ss_pred             hhcCCCChhHHHHHHHHHHHHHhhhc--chhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-h-hhhhccHHH
Q 009632          170 QLCQDDMPMVRRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-Q-DCVAHILPV  245 (530)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~~~~~  245 (530)
                      +++..++..++..++..|.+++..-.  .......++|.+..++.|++  .|..++..+-.++..-.. . -.....+|.
T Consensus       338 kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~  415 (708)
T PF05804_consen  338 KLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQ  415 (708)
T ss_pred             HHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHH
Confidence            99998999999999999999875322  23334458889999998764  556667666666542111 1 112346777


Q ss_pred             HHHhc-CCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHH-hcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhh
Q 009632          246 IVNFS-QDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQH  319 (530)
Q Consensus       246 l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~  319 (530)
                      +.+++ ..++.++...++..+.+++..-..  ......-++.++. .++..++-    .++.+..++..-|+.  .+.+.
T Consensus       416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~  491 (708)
T PF05804_consen  416 LMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDF  491 (708)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHH
Confidence            76653 334555555444444443321100  0001122333333 33333322    234444444443322  12222


Q ss_pred             hhHhHhHhccCCcHHHHHHHHHHHHhhc-cccCHHHHH--HhHHHHHHHhhcCC--ChHHHHHHHHhhHHhhhhhchhH-
Q 009632          320 ILPCVKELSSDSSQHVRSALASVIMGMA-PLLGKDATI--EQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDL-  393 (530)
Q Consensus       320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~-~~~~~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~-  393 (530)
                      +.+.+..+....++.....++.++..+. ...+...+.  ..++|.+...|..+  ..++...++-.++.++..-.... 
T Consensus       492 i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~l  571 (708)
T PF05804_consen  492 IGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPL  571 (708)
T ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence            2222222222334444444444444332 112223333  26899999999765  34677777777777764322111 


Q ss_pred             H-HhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhh-ChhhH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          394 L-SQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQL-GVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       394 ~-~~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~-~~~~~--~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                      + ...+++.+..+++..  +..+-...+.++..+...- +.+.+  ...+..++..+++|++..||..+-.+|..++.. 
T Consensus       572 L~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~-  650 (708)
T PF05804_consen  572 LAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY-  650 (708)
T ss_pred             HHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-
Confidence            1 246778888877654  3555555556665554431 12222  134778899999999999999999999877654 


Q ss_pred             ChhHH
Q 009632          468 GPEWA  472 (530)
Q Consensus       468 ~~~~~  472 (530)
                      .++|.
T Consensus       651 d~~w~  655 (708)
T PF05804_consen  651 DEEWA  655 (708)
T ss_pred             CHHHH
Confidence            44443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=0.00032  Score=65.76  Aligned_cols=258  Identities=17%  Similarity=0.095  Sum_probs=157.7

Q ss_pred             hccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccc-hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 009632          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  316 (530)
Q Consensus       240 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  316 (530)
                      ..++..+.+-..|++..+|..++..|++.+...+.+.  .... +..++..+..+.+.+|...++++|..+.+......+
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            3455556666778888999999999999998754432  1233 444445555666789999999999998887666554


Q ss_pred             HhhhhHhH---hHhccCCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHH---HhhcCCChHHHHHHHHhhHHhhh
Q 009632          317 IQHILPCV---KELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFL---SLLKDEFPDVRLNIISKLDQVNQ  387 (530)
Q Consensus       317 ~~~l~~~l---~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~  387 (530)
                      ...+++.-   ..+..+.+..+|.++...++.++...|   +++|.+++..-+.   --++|+++.|-.+.-..+.....
T Consensus       337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p  416 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYP  416 (533)
T ss_pred             hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCc
Confidence            44444443   455678889999999999998887765   3455555443333   33678888776655444444333


Q ss_pred             hhchhHHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632          388 VIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (530)
Q Consensus       388 ~~~~~~~~~~l~~~l~~~~~~~~~-~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  466 (530)
                      .++.+    .+-..+.+.+ +..- +.+.-.-.++-.+..... + ..-.+......+++...++||.++...-+.....
T Consensus       417 ~l~rk----e~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~  489 (533)
T KOG2032|consen  417 NLVRK----ELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS  489 (533)
T ss_pred             hhHHH----HHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence            33322    2222222222 2111 122212122112211110 0 0111223334456666678999998887777766


Q ss_pred             hChhH----HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          467 FGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       467 ~~~~~----~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      ..+..    ....+...+..+..||-.+++..+..+++.+..
T Consensus       490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            54432    235677788888899999999999999987653

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.40  E-value=4e-05  Score=64.84  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChH
Q 009632          333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR  412 (530)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~  412 (530)
                      +.+|..++.+++.++...+  ...+...|.+..+|+|+++.||..|+..+..+... +.-.+...++..+...+.|+++.
T Consensus         2 ~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE   78 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence            4566666666666655443  33455566677777777777777777777666542 11222344555566666777777


Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHHHHHHHH
Q 009632          413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  444 (530)
Q Consensus       413 ~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~  444 (530)
                      +|..|..++..+....++..+.+.+.+.+..+
T Consensus        79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l  110 (178)
T PF12717_consen   79 IRSLARSFFSELLKKRNPNIIYNNFPELISSL  110 (178)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            77777777777776655555555555544443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=0.001  Score=66.57  Aligned_cols=202  Identities=18%  Similarity=0.175  Sum_probs=137.2

Q ss_pred             hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhh----hhhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChH----
Q 009632           89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDL----VDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI----  159 (530)
Q Consensus        89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~----  159 (530)
                      .+|..+-...|+..+-.|+.-+.+.......+.+    .+.+.|.+..+++++ ++.+...||+++..+++.++..    
T Consensus       171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v  250 (1051)
T KOG0168|consen  171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV  250 (1051)
T ss_pred             HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence            3455555555677666666655555544444333    234788888888877 7888889999999999888775    


Q ss_pred             HHHHHHHHHHh-hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh-
Q 009632          160 LKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-  237 (530)
Q Consensus       160 ~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-  237 (530)
                      +....+|.|.+ ++.=+--.|.+.++++|..+...-+.......-+...+.++.-=.-.++..|+.+..+.++.+.++. 
T Consensus       251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f  330 (1051)
T KOG0168|consen  251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF  330 (1051)
T ss_pred             ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            33456776664 4444556799999999999998777654433323333333222223567788888899998887753 


Q ss_pred             -hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc------cccchHHHHHHhcC
Q 009632          238 -CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------TRMDLVPAYVRLLR  290 (530)
Q Consensus       238 -~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~  290 (530)
                       +.-..+|.+..+++..+.+.-..++-++..++..+....      ....++....+++.
T Consensus       331 ~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls  390 (1051)
T KOG0168|consen  331 HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS  390 (1051)
T ss_pred             hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence             456689999999998888888899999999988775432      12345555555553

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.33  E-value=0.00058  Score=66.83  Aligned_cols=266  Identities=17%  Similarity=0.175  Sum_probs=149.2

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHH
Q 009632          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI  246 (530)
Q Consensus       167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  246 (530)
                      .++...+ .+..+++.|++.++.+.+.++.-  .+..++.+..++.|++..||..|++.|..+++.-+  .+...+...|
T Consensus        27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL  101 (556)
T PF05918_consen   27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVL  101 (556)
T ss_dssp             HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHH
T ss_pred             HHHHHcc-CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHH
Confidence            3344444 46889999999999999988763  45788899999999999999999999999998643  4567788999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc--CCCcHHHHHHHHHHHHHHHHhhCH------HHHHh
Q 009632          247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL--RDNEAEVRIAAAGKVTKFCRILNP------ELAIQ  318 (530)
Q Consensus       247 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~  318 (530)
                      .++++.+++..+..+-++|..+...-.    ...+-..|.+..  ...+..+|..+++.+..-...++.      ++...
T Consensus       102 ~QlL~tdd~~E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~  177 (556)
T PF05918_consen  102 VQLLQTDDPVELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEE  177 (556)
T ss_dssp             HHHTT---HHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHH
Confidence            999998888777777777777765411    123444444444  244567999998888654444332      34445


Q ss_pred             hhhHhHhHhccCCcHHHHHHHHHHHHhhccc--cCHHHHHHhHHHHHHHhhc-C-----CChHH----HHHHHHhhHHhh
Q 009632          319 HILPCVKELSSDSSQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLLK-D-----EFPDV----RLNIISKLDQVN  386 (530)
Q Consensus       319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~-d-----~~~~v----r~~a~~~l~~l~  386 (530)
                      .++..+.+.++|-...-=..+...+..+-..  .....-.+.+++++..... |     .+.+.    ..++-.++.-+.
T Consensus       178 ~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs  257 (556)
T PF05918_consen  178 FIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS  257 (556)
T ss_dssp             HHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc
Confidence            6677777777774432222233333333221  1123334567777765442 1     12222    222222333333


Q ss_pred             hhhchhH----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc
Q 009632          387 QVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  446 (530)
Q Consensus       387 ~~~~~~~----~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~  446 (530)
                      .......    +.+.++|.+..+    ....|...+..+..++...+... ...++|.+...+.
T Consensus       258 ~~v~Sskfv~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~  316 (556)
T PF05918_consen  258 RGVSSSKFVNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLK  316 (556)
T ss_dssp             TTB--HHHHHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHH
Confidence            3222222    234455544433    45678888999999999888655 5556677766664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.33  E-value=0.00011  Score=65.32  Aligned_cols=212  Identities=9%  Similarity=0.098  Sum_probs=143.3

Q ss_pred             HHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHH--hhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHh
Q 009632          282 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAI--QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  358 (530)
Q Consensus       282 ~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~--~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  358 (530)
                      +..++.+++ ..+|.+++.+.-+++..+..-......  -..++.+..++.++++.+|..++.++..++.........+.
T Consensus        14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~   93 (254)
T PF04826_consen   14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM   93 (254)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence            455666666 456899999999999876543333222  35688888999999999999999999988765443333333


Q ss_pred             HHHHHHHh-hcC-CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--hhhHH
Q 009632          359 LLPIFLSL-LKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFD  434 (530)
Q Consensus       359 l~~~l~~~-l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~~~~~  434 (530)
                      .++.+... ..+ -+..++.+++..|.++.-.-....+....+|.+..++...+..+|..++..+..++..-.  .+.+.
T Consensus        94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~  173 (254)
T PF04826_consen   94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS  173 (254)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence            34444433 333 367889999999988864433333445578888888999999999999999999986432  23344


Q ss_pred             HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhChhHH------------------hhhhHHHHHhhccCCChHHHH
Q 009632          435 DKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEWA------------------MQHITPQVLEMINNPHYLYRM  493 (530)
Q Consensus       435 ~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~------------------~~~i~~~l~~~~~d~~~~vr~  493 (530)
                      .+..+.++.+++.+ ..++-..++..+..|...++++..                  ...+-..+..+..+++.+||.
T Consensus       174 ~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~  251 (254)
T PF04826_consen  174 AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKE  251 (254)
T ss_pred             ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhh
Confidence            45666777777765 567888888888888776654310                  023444555556666776665

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=9.9e-05  Score=73.60  Aligned_cols=214  Identities=17%  Similarity=0.212  Sum_probs=144.5

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhH
Q 009632          247 VNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV  324 (530)
Q Consensus       247 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l  324 (530)
                      ...+.|+...+|..+...+..+.+.-.+  -...+.++..++..++|.++-|-.+|++.+..+++.++.+. .+.+....
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i-l~dL~e~Y  811 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI-LPDLSEEY  811 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh-HHHHHHHH
Confidence            3345677778999999988888874322  22346789999999999999999999999999998755432 23333333


Q ss_pred             hHhccCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhHHHhhHH
Q 009632          325 KELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLL  399 (530)
Q Consensus       325 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~  399 (530)
                      .+.-+......|..+-+++..++...|.  ..+...+...++..++|++..-|..++.+++.++....   .+++.+ ++
T Consensus       812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e-v~  890 (982)
T KOG4653|consen  812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE-VL  890 (982)
T ss_pred             HhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH-HH
Confidence            2222222234444455778887777775  23456778888888899988999999999999997653   454433 33


Q ss_pred             HHHHH-HhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHH-----------HHHh-cCCcHHHHHHHHHHHHHHHHH
Q 009632          400 PAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC-----------MQWL-QDKVYSIRDAAANNLKRLAEE  466 (530)
Q Consensus       400 ~~l~~-~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l-----------~~~l-~d~~~~Vr~~a~~~l~~l~~~  466 (530)
                      ..+.. ...|....+|++|++.+..+....|.+     ++|++           .+.. .+++..+|..|+.|+..+-..
T Consensus       891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-----lLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~  965 (982)
T KOG4653|consen  891 QLILSLETTDGSVLVRRAAVHLLAELLNGTGED-----LLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA  965 (982)
T ss_pred             HHHHHHHccCCchhhHHHHHHHHHHHHhccchh-----hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence            33333 345778899999999999998877743     33333           2222 245556777777777665544


Q ss_pred             h
Q 009632          467 F  467 (530)
Q Consensus       467 ~  467 (530)
                      +
T Consensus       966 l  966 (982)
T KOG4653|consen  966 L  966 (982)
T ss_pred             H
Confidence            3

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.32  E-value=1.5e-05  Score=68.35  Aligned_cols=110  Identities=20%  Similarity=0.226  Sum_probs=62.5

Q ss_pred             cChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhh--
Q 009632           19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC--   95 (530)
Q Consensus        19 ~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~--   95 (530)
                      +++.-..|..|+-.|..+.   ++..     +..+.. ..|++..-.-.++.+||.+    ++.+..    |++...+  
T Consensus        15 ~s~~l~~r~rALf~Lr~l~---~~~~-----i~~i~ka~~d~s~llkhe~ay~LgQ~----~~~~Av----~~l~~vl~d   78 (289)
T KOG0567|consen   15 KSQPLQNRFRALFNLRNLL---GPAA-----IKAITKAFIDDSALLKHELAYVLGQM----QDEDAV----PVLVEVLLD   78 (289)
T ss_pred             ccHHHHHHHHHHHhhhccC---ChHH-----HHHHHHhcccchhhhccchhhhhhhh----ccchhh----HHHHHHhcc
Confidence            4566667777776665442   2221     222222 2233334444566666655    222222    3333333  


Q ss_pred             cccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhh
Q 009632           96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA  152 (530)
Q Consensus        96 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l  152 (530)
                      .+..+-||+.|.++|+.+..        ..+.+.+.+..+|+-..+|.++...+..+
T Consensus        79 esq~pmvRhEAaealga~~~--------~~~~~~l~k~~~dp~~~v~ETc~lAi~rl  127 (289)
T KOG0567|consen   79 ESQEPMVRHEAAEALGAIGD--------PESLEILTKYIKDPCKEVRETCELAIKRL  127 (289)
T ss_pred             cccchHHHHHHHHHHHhhcc--------hhhHHHHHHHhcCCccccchHHHHHHHHH
Confidence            34578899999999999962        23566777777777777887755555443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.30  E-value=3.5e-06  Score=66.56  Aligned_cols=107  Identities=18%  Similarity=0.100  Sum_probs=76.9

Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hh
Q 009632          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QD  237 (530)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~  237 (530)
                      .+++.+.+++.+.++.+|..++.+++.++...+.   ......++|.+.+++.|+++.++..++.++..++...+.  ..
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            3667777888888899999999999998875332   222336788888888888888898888888888775432  11


Q ss_pred             -hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009632          238 -CVAHILPVIVNFSQDKSWRVRYMVANQLYELC  269 (530)
Q Consensus       238 -~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~  269 (530)
                       ....+++.+.+.+++.+..+|..++.++.+++
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             12346777777777777777777777776654

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=0.0014  Score=61.62  Aligned_cols=167  Identities=16%  Similarity=0.083  Sum_probs=106.7

Q ss_pred             ccchhHHHHhHhhhhcCC-CCh--HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh--hHHHHHHHHH-Hhh
Q 009632          138 WFTARVSACGLFHIAYPS-APD--ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFE-DLT  211 (530)
Q Consensus       138 ~~~~r~~~~~~l~~l~~~-~~~--~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~-~~~  211 (530)
                      .+..|......+..+... .-+  .....++..+..-..|++..+|..|+..|++.+..++.+.  ..+.++..++ .+.
T Consensus       230 ~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~  309 (533)
T KOG2032|consen  230 KENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLY  309 (533)
T ss_pred             cccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHh
Confidence            345566555555544322 111  1345555556666779999999999999999998866643  3344555544 445


Q ss_pred             cCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHhCCc---ccccchHH--
Q 009632          212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI---VNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVP--  283 (530)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l---~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~--  283 (530)
                      .+.+.+|...++.+|..+...........++++.-   ..+..|.+..+|.++...++.++...|..   .+.+.+..  
T Consensus       310 D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~  389 (533)
T KOG2032|consen  310 DDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRL  389 (533)
T ss_pred             cCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcc
Confidence            55577899999999998888776655555555554   44677888889999999999998887643   22222221  


Q ss_pred             -HHHHhcCCCcHHHHHHHHHHH
Q 009632          284 -AYVRLLRDNEAEVRIAAAGKV  304 (530)
Q Consensus       284 -~l~~~l~d~~~~vr~~a~~~l  304 (530)
                       .++-.+.|+.|.|-.++-..+
T Consensus       390 ~~lllhl~d~~p~va~ACr~~~  411 (533)
T KOG2032|consen  390 APLLLHLQDPNPYVARACRSEL  411 (533)
T ss_pred             ccceeeeCCCChHHHHHHHHHH
Confidence             123345778777755443333

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=0.00011  Score=73.27  Aligned_cols=183  Identities=18%  Similarity=0.283  Sum_probs=138.1

Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhh
Q 009632          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA  240 (530)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (530)
                      +-+......+.|+.+.+|..++..+..+++.-.+  -.....++..+...+.|+++-|-..|+..+..+++.+++.    
T Consensus       727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~----  802 (982)
T KOG4653|consen  727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED----  802 (982)
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----
Confidence            4456666778899999999999999999985433  2345678999999999999999999999999999886644    


Q ss_pred             ccHHHHHH-h---cCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--
Q 009632          241 HILPVIVN-F---SQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--  312 (530)
Q Consensus       241 ~~~~~l~~-~---~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--  312 (530)
                       ++|-+.+ .   -+......|--+.++|.+++...|+-.  +...++..++...+|++..-|.+++.+++.++....  
T Consensus       803 -il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  803 -ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             -hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence             5565554 2   222224566666788999888888743  345788899999999988899999999999988653  


Q ss_pred             -HHHHHhhhhHhHhHh-ccCCcHHHHHHHHHHHHhhccccC
Q 009632          313 -PELAIQHILPCVKEL-SSDSSQHVRSALASVIMGMAPLLG  351 (530)
Q Consensus       313 -~~~~~~~l~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~  351 (530)
                       .+.+ ..++..+..+ ..|.+.-+|++|+..+..+-...|
T Consensus       882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg  921 (982)
T KOG4653|consen  882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG  921 (982)
T ss_pred             hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence             3333 3444444433 347888999999999888877666

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.22  E-value=0.0012  Score=61.10  Aligned_cols=184  Identities=18%  Similarity=0.192  Sum_probs=125.0

Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHh-hCHHHH---HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC----HHHHH
Q 009632          285 YVRLLRDNEAEVRIAAAGKVTKFCRI-LNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATI  356 (530)
Q Consensus       285 l~~~l~d~~~~vr~~a~~~l~~~~~~-~~~~~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~  356 (530)
                      .+..+.+.....|.+++..+..+... +-.+.+   ...+++.+.+.++....+-+..+++.++.++-.+|    .+.+.
T Consensus        48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~  127 (309)
T PF05004_consen   48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF  127 (309)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence            34445666678888888888776643 222221   24556666666655554566677788888877755    35678


Q ss_pred             HhHHHHHHHhhcCCC--hHHHHHHHHhhHHhhhhhchhH-HHhhHHHHHH---H--Hhc----------CCChHHHHHHH
Q 009632          357 EQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIV---E--LAE----------DRHWRVRLAII  418 (530)
Q Consensus       357 ~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~---~--~~~----------~~~~~~R~~~~  418 (530)
                      ..+.|.+.+.+.|..  ..+|..++.+|+-++-..+.+. -....+..+.   .  ..+          .++..+..+|+
T Consensus       128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL  207 (309)
T PF05004_consen  128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL  207 (309)
T ss_pred             HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence            889999999999875  4678888888887665443321 1122223332   1  111          12357999999


Q ss_pred             HHHHHHHhhhChhhH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632          419 EYIPLLASQLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (530)
Q Consensus       419 ~~l~~l~~~~~~~~~---~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  468 (530)
                      .+.+.+...++...+   ....+|.+..+|..++.+||.+|.++|+.+++...
T Consensus       208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  208 SAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999988886433   35578999999999999999999999999887653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.21  E-value=0.0071  Score=59.13  Aligned_cols=401  Identities=16%  Similarity=0.088  Sum_probs=211.2

Q ss_pred             HHHHHHhcCC--ccchhHHHHhHhhhhcCCCCh---H-HHHHHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhhhcc----
Q 009632          128 PLVKRLAAGE--WFTARVSACGLFHIAYPSAPD---I-LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP----  196 (530)
Q Consensus       128 ~~l~~l~~~~--~~~~r~~~~~~l~~l~~~~~~---~-~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~~~~----  196 (530)
                      +.+..+...+  ..........+++.++..-..   + .....++.++.++.+++ ..++.....++..+.+..+.    
T Consensus        54 ~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~  133 (678)
T KOG1293|consen   54 ELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKK  133 (678)
T ss_pred             HHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccc
Confidence            4444444333  333443444455444432211   2 34556788888888888 88999999999999886543    


Q ss_pred             -hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh---hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 009632          197 -AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV  272 (530)
Q Consensus       197 -~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  272 (530)
                       ......+++.+..+...+.+.+...-+ .+...+.....+.   +-..+.+.+.-+....+..+|.++..++..-...+
T Consensus       134 ~s~~~~sIi~~~s~l~s~~lk~~~~l~~-~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL  212 (678)
T KOG1293|consen  134 MSLHLKSIIVKFSLLYSIELKYISRLDV-SRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRIL  212 (678)
T ss_pred             hhhhHHHHHHHHHHHHhhhhhhhhhhhh-hhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceee
Confidence             122344666665555522221111111 1111111111110   11224444454555556778988888887322211


Q ss_pred             CCcc----------cccchHH--HHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-H--HHHh--------hhhHhH-hHhc
Q 009632          273 GPEP----------TRMDLVP--AYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E--LAIQ--------HILPCV-KELS  328 (530)
Q Consensus       273 ~~~~----------~~~~l~~--~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~--~~~~--------~l~~~l-~~~~  328 (530)
                      ..+.          ....+.+  ...++.+|+++.-|..++.++..+...-.. +  .+..        .+..+. ..+.
T Consensus       213 ~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~  292 (678)
T KOG1293|consen  213 RNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLM  292 (678)
T ss_pred             ecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheee
Confidence            1110          0122333  455677888888887777777766653211 1  0000        111111 1223


Q ss_pred             cCCcHHHHHHHHHHHHhhc---cccCHHHHHHhHHHHHHHhh------cCCChHHHHHHHHhh---HHhhhhhchhHHHh
Q 009632          329 SDSSQHVRSALASVIMGMA---PLLGKDATIEQLLPIFLSLL------KDEFPDVRLNIISKL---DQVNQVIGIDLLSQ  396 (530)
Q Consensus       329 ~d~~~~vr~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l---~~l~~~~~~~~~~~  396 (530)
                      .|+-|..-...+......+   +.....++.....+....++      +...+..|.-++.-.   ...+...|.. ..+
T Consensus       293 ~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~-~~k  371 (678)
T KOG1293|consen  293 NDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEIS-LKK  371 (678)
T ss_pred             cCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchh-HHH
Confidence            4555543333333333222   21111122222222222222      233334443333221   1111111110 112


Q ss_pred             hHHHH-----HHHHhcCCChHHHHHHHHHHHHHHhhh---ChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632          397 SLLPA-----IVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (530)
Q Consensus       397 ~l~~~-----l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  468 (530)
                      +++..     +....-.++...+.+++.++..++..+   ..+.-..++...+.+++.|+...|...+..++..++-.++
T Consensus       372 ~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs  451 (678)
T KOG1293|consen  372 EILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS  451 (678)
T ss_pred             HHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence            22222     222223346778899998887776644   3333345677778888899999999999999999998876


Q ss_pred             hh---HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH---HH-hhHHHHHHhhccCCCCCC
Q 009632          469 PE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TC-SRLLPVVINASKDRYLNL  530 (530)
Q Consensus       469 ~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~---~~-~~~~p~l~~~l~D~~~~v  530 (530)
                      +.   +.....+..+..+..+++..+|..+.+++.+++-....++   +. ..-...+..+.+||.+.|
T Consensus       452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~V  520 (678)
T KOG1293|consen  452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAV  520 (678)
T ss_pred             cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence            53   4457789999999999999999999999999876655332   22 222446666777776543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.20  E-value=0.00035  Score=65.12  Aligned_cols=189  Identities=17%  Similarity=0.113  Sum_probs=123.6

Q ss_pred             hHhHhccCCcHHHHHHHHHHHHhh-ccc-cC-HHHHHHhHHHHHHHhhcC-CChHHHHHHHHhhHHhhhhhchhHH--Hh
Q 009632          323 CVKELSSDSSQHVRSALASVIMGM-APL-LG-KDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLL--SQ  396 (530)
Q Consensus       323 ~l~~~~~d~~~~vr~~~~~~l~~l-~~~-~~-~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~--~~  396 (530)
                      .+.++..+....-|..++..+..+ +.. ++ .+.+..+++..++..|.| .+...|.-|++.+..++..=....+  .+
T Consensus       291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE  370 (516)
T KOG2956|consen  291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE  370 (516)
T ss_pred             HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence            344444443444555555544443 321 22 144567788888899999 7888999999999999865322111  12


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH---Hh
Q 009632          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AM  473 (530)
Q Consensus       397 ~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~  473 (530)
                      ..+..+.+...|++..+-..|.+.+..++....+..-...+.|.++.    .+...-..+++++..+++.+..+.   ..
T Consensus       371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll  446 (516)
T KOG2956|consen  371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLL  446 (516)
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence            33444555567777665555566555554444444333445665554    334445677778899998887653   23


Q ss_pred             hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhH
Q 009632          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL  515 (530)
Q Consensus       474 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~  515 (530)
                      .++.|++.+.++..+..||..++.++..+...+|.+.+.+|+
T Consensus       447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL  488 (516)
T KOG2956|consen  447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL  488 (516)
T ss_pred             hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence            788999999999999999999999999999999976554443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.20  E-value=0.00014  Score=67.60  Aligned_cols=196  Identities=18%  Similarity=0.213  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHhcCCccchhHHHHh-HhhhhcCCC-C--hHHHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcch-
Q 009632          124 DWYIPLVKRLAAGEWFTARVSACG-LFHIAYPSA-P--DILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPA-  197 (530)
Q Consensus       124 ~~l~~~l~~l~~~~~~~~r~~~~~-~l~~l~~~~-~--~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~-  197 (530)
                      .++...+..+..++...-|..|.. +...++... +  +++..+++..+.+.+.| .+...|+.|+..|..++..-+.. 
T Consensus       286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l  365 (516)
T KOG2956|consen  286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL  365 (516)
T ss_pred             HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence            345566666666655556666655 334333331 1  34677888888888888 78889999999999999875542 


Q ss_pred             -hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 009632          198 -HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP  276 (530)
Q Consensus       198 -~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  276 (530)
                       ...+..+-.+++...|..+.|-..|.+.+..+.....+......+.|.+..    .+...-.++.+.+..+.+.+..+.
T Consensus       366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~Ee  441 (516)
T KOG2956|consen  366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEE  441 (516)
T ss_pred             hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHH
Confidence             223445566777778888877666666655554443332222334444433    333344556667777776665543


Q ss_pred             ---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHh
Q 009632          277 ---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL  327 (530)
Q Consensus       277 ---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~  327 (530)
                         ....+.|.+++.....+..||+.++.+|-.+...+|.+.+    .|.+.++
T Consensus       442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m----ePhL~~L  491 (516)
T KOG2956|consen  442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM----EPHLEQL  491 (516)
T ss_pred             HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh----hhHhhhc
Confidence               2467899999999999999999999999999999997543    4555444

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.17  E-value=0.0035  Score=60.30  Aligned_cols=192  Identities=18%  Similarity=0.128  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcC
Q 009632          179 VRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQ  251 (530)
Q Consensus       179 vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~  251 (530)
                      +-...+..+..+..+..+     +.+...++..+......++..||..+++.+..+...+++  +...+.++..+.+-+-
T Consensus        63 i~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~  142 (885)
T COG5218          63 IPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF  142 (885)
T ss_pred             cHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence            334445555555553222     123334444555555666677787777777777777776  5566666777777777


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccC
Q 009632          252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD  330 (530)
Q Consensus       252 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d  330 (530)
                      |..+.||..+..++..+..--+.+.  ..+...+...+ +|++.+||..|+-.+..=          +.-.|++.+-..|
T Consensus       143 DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~vd----------nsT~p~IlERarD  210 (885)
T COG5218         143 DREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNISVD----------NSTYPCILERARD  210 (885)
T ss_pred             cchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHeeeC----------CCcchhHHHHhhh
Confidence            7777788888777777765444332  12233333333 688889998877654321          3456777777777


Q ss_pred             CcHHHHHHHH-HHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHH
Q 009632          331 SSQHVRSALA-SVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (530)
Q Consensus       331 ~~~~vr~~~~-~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (530)
                      -+.-.|..+. ++++.++.... ....+.+. ++.-.+.|.+..||.++...+..
T Consensus       211 v~~anRr~vY~r~Lp~iGd~~~-lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia~  263 (885)
T COG5218         211 VSGANRRMVYERCLPRIGDLKS-LSIDKRIL-LMEWGLLDREFSVKGALVDAIAS  263 (885)
T ss_pred             hhHHHHHHHHHHHhhhhcchhh-ccccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence            7766665443 34444432211 11122333 45556788888999988887765

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.011  Score=58.70  Aligned_cols=129  Identities=9%  Similarity=0.061  Sum_probs=91.0

Q ss_pred             HhhHHHHHHHHhc-----C---CChHHHHHHHHHHHHHHhhhCh-----hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 009632          395 SQSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (530)
Q Consensus       395 ~~~l~~~l~~~~~-----~---~~~~~R~~~~~~l~~l~~~~~~-----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~  461 (530)
                      .+.+++.+...+.     +   .+.+-.+.++..++.+......     ..+...++++++..++++.--.|..||..+.
T Consensus       406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is  485 (970)
T COG5656         406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence            3567777766652     1   2455667788888887774432     1233456777777889999999999999999


Q ss_pred             HHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC-hHHHHhhHHHHHHhhc
Q 009632          462 RLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINAS  523 (530)
Q Consensus       462 ~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~-~~~~~~~~~p~l~~~l  523 (530)
                      .+-..++......++.....+++++.+..|+..|.-|+.-++.... .+.+..++-+.+.+++
T Consensus       486 ~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLL  548 (970)
T COG5656         486 TIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLL  548 (970)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHH
Confidence            9876666554556677778888888999999999999998876543 3445556655665554

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=98.14  E-value=0.012  Score=59.87  Aligned_cols=151  Identities=15%  Similarity=0.184  Sum_probs=98.7

Q ss_pred             HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632          353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (530)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~  429 (530)
                      ..+...+.|.+.+.+....-.+|..-+.+|..+......+.+   .+.++|.+.+-++=++..+|.....++..+....+
T Consensus       862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            344555667777666655556666666666666665443321   36677777777777777777777777776655443


Q ss_pred             --hhhHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHhChh---HHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632          430 --VGFFDDKLGALCMQWLQDKV---YSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISL  501 (530)
Q Consensus       430 --~~~~~~~~~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~  501 (530)
                        .......++|.++.+-.|++   ..||+.|++|++.+.+.....   .+++.++..+.+.+.|+...||+.|.++=+.
T Consensus       942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence              23335567777777776655   577777888877777754332   2356677777777777777777777777665


Q ss_pred             Hh
Q 009632          502 LA  503 (530)
Q Consensus       502 i~  503 (530)
                      +.
T Consensus      1022 W~ 1023 (1030)
T KOG1967|consen 1022 WY 1023 (1030)
T ss_pred             hh
Confidence            54

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=0.0018  Score=64.90  Aligned_cols=186  Identities=18%  Similarity=0.162  Sum_probs=129.1

Q ss_pred             cHHHHHHHhcCh-hHHHHHHHhhcHHHHHHhhChHhh-----hhcccccccc-ccC-CchHHHHHHHHHHhcccccCCCc
Q 009632           10 PIAVLIDELKND-DIQLRLNSIRRLSTIARALGEERT-----RKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGV   81 (530)
Q Consensus        10 ~~~~l~~~l~~~-~~~~R~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~~   81 (530)
                      -+..|++++++. |+..-..|++.+.++.. +|.+..     .+.++|.|.. +++ .+.++...|+++|..+-+.+...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            478899999977 99888888887777643 344443     3467777766 443 57899999999997766544311


Q ss_pred             ---cchhcchhHH-HhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC
Q 009632           82 ---EHAHVLLPPL-ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (530)
Q Consensus        82 ---~~~~~l~~~l-~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~  157 (530)
                         -.....+|+| ..++.-+.-+|.+.++.++..|...-+...+..--+..+...+.=-+-.++..|....+.++..+.
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence               1122355655 556677888999999999999998877655433212222111111122455667777777777776


Q ss_pred             hH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc
Q 009632          158 DI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP  196 (530)
Q Consensus       158 ~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~  196 (530)
                      .+   +.-+.+|.|..+++..+..+-..++-++..++..+..
T Consensus       327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h  368 (1051)
T KOG0168|consen  327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH  368 (1051)
T ss_pred             CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence            65   6788899999999988888889999999999887755

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.04  E-value=8.2e-06  Score=53.78  Aligned_cols=53  Identities=32%  Similarity=0.137  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHHHHHHhhhCh--hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632          411 WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (530)
Q Consensus       411 ~~~R~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  463 (530)
                      |++|..++.+|+.++...+.  ..+...++|.+..++.|+...||..|+.+||.|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            67778888887776544332  224566777777777777778888888777754

...

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.03  E-value=0.0019  Score=59.71  Aligned_cols=199  Identities=17%  Similarity=0.161  Sum_probs=137.7

Q ss_pred             ccCCcHHHHHHHHHHHHhhcc-ccCHHHH---HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc----hhHHHhhHH
Q 009632          328 SSDSSQHVRSALASVIMGMAP-LLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLL  399 (530)
Q Consensus       328 ~~d~~~~vr~~~~~~l~~l~~-~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~  399 (530)
                      +.+++...|..++..+..+.. ..-.++.   ...+++.+...++-+...-+..|+.+++-++-.+|    .+.+.+.+.
T Consensus        52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~  131 (309)
T PF05004_consen   52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELK  131 (309)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Confidence            356778899999988877653 2333333   44677888888887776667778888888887766    345567889


Q ss_pred             HHHHHHhcCCC--hHHHHHHHHHHHHHHhhhChhh--HHH--HHHHHHHHH--hc-C---------CcHHHHHHHHHHHH
Q 009632          400 PAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDD--KLGALCMQW--LQ-D---------KVYSIRDAAANNLK  461 (530)
Q Consensus       400 ~~l~~~~~~~~--~~~R~~~~~~l~~l~~~~~~~~--~~~--~~~~~l~~~--l~-d---------~~~~Vr~~a~~~l~  461 (530)
                      |.|...+.|..  ...|..++.+++.++-..+.+.  ...  ..+..++..  .+ |         +.+.|..+|+.+++
T Consensus       132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~  211 (309)
T PF05004_consen  132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA  211 (309)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence            99999888764  5688888888887765444322  211  233322221  11 2         23679999999999


Q ss_pred             HHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh---H---HHHhhHHHHHHhhccCC
Q 009632          462 RLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E---ITCSRLLPVVINASKDR  526 (530)
Q Consensus       462 ~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~---~---~~~~~~~p~l~~~l~D~  526 (530)
                      -+...++....   .+..+|.+..++..++..||.+|-++++-+.+....   +   .-.+.+...|..+..|.
T Consensus       212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS  285 (309)
T PF05004_consen  212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS  285 (309)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence            99988876322   256789999999999999999999999988775432   1   12455666667666665

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=98.01  E-value=0.0025  Score=57.23  Aligned_cols=226  Identities=12%  Similarity=0.052  Sum_probs=138.3

Q ss_pred             HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhh----hHHHHHHHHhcCCccchhHHHHhHhhhhc--CCCChHHHHHH
Q 009632           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVD----WYIPLVKRLAAGEWFTARVSACGLFHIAY--PSAPDILKTEL  164 (530)
Q Consensus        91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~l~~~~~~~~r~~~~~~l~~l~--~~~~~~~~~~l  164 (530)
                      |...++++++.+|..|+..|+.+...++++.+..    .+...+..-.. +...+... ...+..+.  +..+++....+
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i   81 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DHACVQPA-LKGLLALVKMKNFSPESAVKI   81 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cHhhHHHH-HHHHHHHHhCcCCChhhHHHH
Confidence            4455678999999999999999999998754433    23344433332 23334433 44444443  34455556666


Q ss_pred             HHHHHhhcC--CCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCchhhh
Q 009632          165 RSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCV  239 (530)
Q Consensus       165 ~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~  239 (530)
                      +..+.+-.+  .-....|..+.+.+..+.......  ...+.++..+.+.+..+ +|+--..+.+.+..+...+....+.
T Consensus        82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~  161 (262)
T PF14500_consen   82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA  161 (262)
T ss_pred             HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            666665433  335678999999999988765432  22345666666666654 5666667777777777776654444


Q ss_pred             hccHHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632          240 AHILPVIVNF--------SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (530)
Q Consensus       240 ~~~~~~l~~~--------~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  311 (530)
                      +.+...+.-.        -+|+..-.|......|.....  ....+.+..+|.+++-+.++.+.++..+++++...+..+
T Consensus       162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y  239 (262)
T PF14500_consen  162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence            4444443322        123322233333333322221  112224567899999999999999999999999999998


Q ss_pred             CHHHHHhhh
Q 009632          312 NPELAIQHI  320 (530)
Q Consensus       312 ~~~~~~~~l  320 (530)
                      |.+.+.+.+
T Consensus       240 ~~~~~~~~~  248 (262)
T PF14500_consen  240 GADSLSPHW  248 (262)
T ss_pred             CHHHHHHHH
Confidence            876554433

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.011  Score=52.85  Aligned_cols=243  Identities=13%  Similarity=0.081  Sum_probs=148.1

Q ss_pred             HHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhh-------hhhHHHHHHHHhcCCc
Q 009632           66 AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIPLVKRLAAGEW  138 (530)
Q Consensus        66 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~l~~~l~~l~~~~~  138 (530)
                      ....||.++-+...+......+.|.|...+..++..|+..+++.++.+.+.......       ...+++.+...+.+++
T Consensus        62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged  141 (524)
T KOG4413|consen   62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED  141 (524)
T ss_pred             hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence            355666666554444445567788888888889999999999999999998875433       3447788888888888


Q ss_pred             cchhHHHHhHhhhhcCCCCh-H--HHHHHHHH--HHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHh
Q 009632          139 FTARVSACGLFHIAYPSAPD-I--LKTELRSI--YTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDL  210 (530)
Q Consensus       139 ~~~r~~~~~~l~~l~~~~~~-~--~~~~l~~~--l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~  210 (530)
                      ..+-..+...+..++..-.. +  ...++..-  +..+..-.+..+|..+.+.+..+....+.   +.-.+.++..+..-
T Consensus       142 deVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE  221 (524)
T KOG4413|consen  142 DEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE  221 (524)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence            88888888777665432110 0  00001100  00111123456788887877777665433   33345677777665


Q ss_pred             hcC-CchhHHHHHHHHHHHHhhhcCchhhh--hccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCccccc----c-
Q 009632          211 TQD-DQDSVRLLAVEGCAALGKLLEPQDCV--AHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRM----D-  280 (530)
Q Consensus       211 ~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~----~-  280 (530)
                      ++. ++.-|+..+++....++..-....|.  ..++..++..+.  |.++--+.   ..+..+++.+|++..+.    . 
T Consensus       222 lkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekf---ralmgfgkffgkeaimdvseeai  298 (524)
T KOG4413|consen  222 LKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKF---RALMGFGKFFGKEAIMDVSEEAI  298 (524)
T ss_pred             hcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHH---HHHHHHHHHhcchHHhhcCHHHH
Confidence            555 55679999999888887654333332  235566665543  33332222   22334445555443221    1 


Q ss_pred             ------hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632          281 ------LVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (530)
Q Consensus       281 ------l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  311 (530)
                            .+.-.++.+.-++|+...+|+.+++.++...
T Consensus       299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt  335 (524)
T KOG4413|consen  299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT  335 (524)
T ss_pred             HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence                  2222344556777889999999999987765

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.97  E-value=1.1e-05  Score=53.15  Aligned_cols=52  Identities=35%  Similarity=0.421  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 009632          177 PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA  228 (530)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~  228 (530)
                      |.||..++.+|+.++...++  ..+.+.++|.+..++.|+++.||..|..+|+.
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            56777777777765544433  33456677777777777777777777776654

...

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.94  E-value=0.04  Score=57.91  Aligned_cols=132  Identities=17%  Similarity=0.086  Sum_probs=91.8

Q ss_pred             hHHHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHH
Q 009632          392 DLLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEE  466 (530)
Q Consensus       392 ~~~~~~l~~~l~~~~~~~----~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~  466 (530)
                      ..+...+.|.+.+.++++    ++..+.+|--+++.+.- ++.++ ...-+|.++..+. .+.+-||..+.-++|.++-.
T Consensus       914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~f-ces~l~llftimeksp~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAEF-CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHHH-HHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence            344456788888888654    67899999999988752 34443 4445777777776 78888999999999888877


Q ss_pred             hChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCCCC
Q 009632          467 FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLN  529 (530)
Q Consensus       467 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~~~  529 (530)
                      +..-  .+..-+.+...+.|++..||.+|+..+.+++-+- .-. ..-.++.+..++.||.+.
T Consensus       992 fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-miK-VKGql~eMA~cl~D~~~~ 1050 (1251)
T KOG0414|consen  992 FPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND-MIK-VKGQLSEMALCLEDPNAE 1050 (1251)
T ss_pred             cccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-hhH-hcccHHHHHHHhcCCcHH
Confidence            6432  2556677788888999999999998888876431 000 122356667777777654

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.94  E-value=0.012  Score=61.45  Aligned_cols=148  Identities=15%  Similarity=0.156  Sum_probs=90.3

Q ss_pred             CHHHHHHhHHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Q 009632          351 GKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA  425 (530)
Q Consensus       351 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~  425 (530)
                      |++.....+.|++....+.    .+++++.+|.-+++.++..-  ..+.+.-+|.|...+. .+++.+|..++-+++-++
T Consensus       912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS--a~fces~l~llftimeksp~p~IRsN~VvalgDla  989 (1251)
T KOG0414|consen  912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS--AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA  989 (1251)
T ss_pred             ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence            4455566666777766643    34677777777777765431  2233455666666655 567777777777777766


Q ss_pred             hhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          426 SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       426 ~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      -.++.  +.+-.-+++..-+.|..+.||+.|+.++..+.-+-  -....-.++.+..++.||+.++|..|-.++..+..
T Consensus       990 v~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  990 VRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             hhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            54432  22334566677777777777777777776655331  01113346666667777777777777766665544

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00093  Score=63.79  Aligned_cols=281  Identities=14%  Similarity=0.027  Sum_probs=169.8

Q ss_pred             HHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHH
Q 009632          145 ACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE  224 (530)
Q Consensus       145 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~  224 (530)
                      +...++.+....+.+.-+.+++.+..--+.-.+.+.+.++..++-......+    ..++..+.+++..++...-++|..
T Consensus       393 alyalGLI~Agfgr~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan----~eiye~lKe~l~nD~a~~geAa~~  468 (926)
T COG5116         393 ALYALGLIKAGFGREDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSAN----REIYEKLKELLKNDRALLGEAAVY  468 (926)
T ss_pred             eeeeehhhccCcCcccHHHHHHHhCcccccccHHHHHHHHhhhcchhccccc----HHHHHHHHHHHhcchhhhhhhhhh
Confidence            3444455555555555555665554433334578888888887766543333    356677777777776666666666


Q ss_pred             HHHHHhhhcCchhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632          225 GCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK  303 (530)
Q Consensus       225 ~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (530)
                      .++-+.-.....    ..+.-+...... ...++.+...-.++-+.-  |.+   +..-.++.+++.|.++..|.+.+-+
T Consensus       469 gMGl~mLgt~s~----eai~dm~tya~ETqhe~i~Rglgig~aLi~y--grq---e~add~I~ell~d~ds~lRy~G~fs  539 (926)
T COG5116         469 GMGLLMLGTWSV----EAIEDMRTYAGETQHERIKRGLGIGFALILY--GRQ---EMADDYINELLYDKDSILRYNGVFS  539 (926)
T ss_pred             ccceeeecCCCH----HHHHHHHHHhcchhhhhHHhhhhhhhhHhhh--hhH---HHHHHHHHHHhcCchHHhhhccHHH
Confidence            665554332221    122222222222 234455554433333321  211   1223456678889989999888877


Q ss_pred             HHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc-CCChHHHHHHHHhh
Q 009632          304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKL  382 (530)
Q Consensus       304 l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l  382 (530)
                      ++.-.-..|.......++++-   +.|.+..||+++.-+++-+|-.      ....++-..++|. ..++.||...+-+|
T Consensus       540 ~alAy~GTgn~~vv~~lLh~a---vsD~nDDVrRAAViAlGfvc~~------D~~~lv~tvelLs~shN~hVR~g~AvaL  610 (926)
T COG5116         540 LALAYVGTGNLGVVSTLLHYA---VSDGNDDVRRAAVIALGFVCCD------DRDLLVGTVELLSESHNFHVRAGVAVAL  610 (926)
T ss_pred             HHHHHhcCCcchhHhhhheee---cccCchHHHHHHHHheeeeEec------CcchhhHHHHHhhhccchhhhhhhHHHh
Confidence            765544445543334444332   5788889999998888776521      1123344445554 45788999999999


Q ss_pred             HHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH--HHHHHHHHHHHhcCCcHH
Q 009632          383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYS  451 (530)
Q Consensus       383 ~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~d~~~~  451 (530)
                      +-.|..-|..    ..+..|..+..|++.-+|+.|+-+++.+.....++..  ...+...+.+.+.|+...
T Consensus       611 Giacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~  677 (926)
T COG5116         611 GIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES  677 (926)
T ss_pred             hhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh
Confidence            9888777643    4455666778899999999999999988777665442  234566666667766543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.0035  Score=61.57  Aligned_cols=187  Identities=13%  Similarity=0.079  Sum_probs=123.9

Q ss_pred             HHHHHHHHHH-hhcCCCChhHHHHHHHHHHHHHhhh--cc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632          160 LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATV--EP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (530)
Q Consensus       160 ~~~~l~~~l~-~l~~d~~~~vR~~a~~~l~~l~~~~--~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  233 (530)
                      ..+++++.+. ..+.-+...+....-+.++.++..-  .+   +....-.-|.+...++-.|..||..|+..+..+....
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            3344444333 3344344445555555566665432  11   1122224466777788889999999999988888777


Q ss_pred             Cchh-------hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----CCcccccchHHHHHHhcCCCcHHHHHHHHH
Q 009632          234 EPQD-------CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV----GPEPTRMDLVPAYVRLLRDNEAEVRIAAAG  302 (530)
Q Consensus       234 ~~~~-------~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  302 (530)
                      +++.       ..+.-...+..++.|+.+.||..+...+..+...+    ++....+.+-.++-.+-.|+..+||.+..+
T Consensus       206 dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~  285 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFK  285 (1005)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhc
Confidence            6632       22333455677889999999998887777666543    333222233333444557888899999999


Q ss_pred             HHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhh
Q 009632          303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGM  346 (530)
Q Consensus       303 ~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l  346 (530)
                      .+..+...--.....+.++|.+...+.|++.+||.++...+..+
T Consensus       286 gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  286 GLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             CcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence            99998876554556688899888889999999999999888766

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=0.017  Score=57.04  Aligned_cols=143  Identities=24%  Similarity=0.215  Sum_probs=85.1

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-------HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc----
Q 009632          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----  350 (530)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----  350 (530)
                      -|.+.+.++-.+.+||.+|+..+-.+....|++       ...+.-...+.+++.|+-+.||..++..+..+...+    
T Consensus       176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i  255 (1005)
T KOG1949|consen  176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI  255 (1005)
T ss_pred             hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            355666666777777777776666665554443       223333445566677777777777776666554322    


Q ss_pred             CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 009632          351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  424 (530)
Q Consensus       351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l  424 (530)
                      ++....+.+-.++-.+-.|...+||....+.+..+...-....+.+.++|.+-..+.|+..++|.++++.+..+
T Consensus       256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence            22222222222223334466667777777777777655444445567777777777777777777777777665

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.00064  Score=64.87  Aligned_cols=297  Identities=17%  Similarity=0.163  Sum_probs=162.7

Q ss_pred             CcHHHHHHHhcChhHHHHHH---HhhcHHHHHHhhChHhhhhccccccccccCC-chHHHHHHHHHHhcccccCCCccch
Q 009632            9 YPIAVLIDELKNDDIQLRLN---SIRRLSTIARALGEERTRKELIPFLSENNDD-DDEVLLAMAEELGVFIPYVGGVEHA   84 (530)
Q Consensus         9 ~~~~~l~~~l~~~~~~~R~~---a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~-~~~vr~~~~~~l~~~~~~~~~~~~~   84 (530)
                      +..+.|..+|.+.+.+-|+.   |..+++-+-..+|.+.+ +.|...+....|. .|++.-.++.-+|-..  .|+.  -
T Consensus       370 ~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~~T-eYL~e~~~~teDe~~~~l~yG~~LGiGL~~--MgSa--n  444 (926)
T COG5116         370 PGYEILKPYLPSEVASSRQKEGGALYALGLIKAGFGREDT-EYLLEYFLDTEDELTPELAYGVCLGIGLIN--MGSA--N  444 (926)
T ss_pred             chhHhhhccCCcccchhhhccCceeeeehhhccCcCcccH-HHHHHHhCcccccccHHHHHHHHhhhcchh--cccc--c
Confidence            34556667777777655543   45555555444443333 3344343333332 3444444443333211  1211  1


Q ss_pred             hcchhHHHhhhcccchHHHHHHHHHHHHHHh-hcChhhhhhhHHHHHHHHhcCCc-cch-hHHHHhHhhhhcCCCChHHH
Q 009632           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGS-QMRESDLVDWYIPLVKRLAAGEW-FTA-RVSACGLFHIAYPSAPDILK  161 (530)
Q Consensus        85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~l~~~~~-~~~-r~~~~~~l~~l~~~~~~~~~  161 (530)
                      ..+..-+.+++-.+....-++|+..++-++- +++.+.     +.-+....+..+ .++ |-.++.+ + +.-...   +
T Consensus       445 ~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~ea-----i~dm~tya~ETqhe~i~Rglgig~-a-Li~ygr---q  514 (926)
T COG5116         445 REIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEA-----IEDMRTYAGETQHERIKRGLGIGF-A-LILYGR---Q  514 (926)
T ss_pred             HHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHH-----HHHHHHHhcchhhhhHHhhhhhhh-h-Hhhhhh---H
Confidence            3455556666655555555666666555433 222222     222222222222 111 1111111 0 111111   1


Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhc
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  241 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (530)
                      +..-..+.+++.|.++..|...+.+++.--..-++......+++.   ..+|.++.||.+|+-+++-++-.-     .+.
T Consensus       515 e~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~D-----~~~  586 (926)
T COG5116         515 EMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCDD-----RDL  586 (926)
T ss_pred             HHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEecC-----cch
Confidence            222335668888999999998877766533322333333333332   378999999999999988776421     222


Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH--HHhh
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--AIQH  319 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~  319 (530)
                      +...+.-+.++.++.||...+-+|+-.+..-|..    ..+..+..++.|+.+-||.+|+-+.+-+.....++.  -...
T Consensus       587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~  662 (926)
T COG5116         587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKR  662 (926)
T ss_pred             hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHH
Confidence            4444555556678999999999999888766643    456777888999999999999999998877665441  1233


Q ss_pred             hhHhHhHhccCCc
Q 009632          320 ILPCVKELSSDSS  332 (530)
Q Consensus       320 l~~~l~~~~~d~~  332 (530)
                      +...+.+.+.|++
T Consensus       663 I~k~f~~vI~~Kh  675 (926)
T COG5116         663 IIKKFNRVIVDKH  675 (926)
T ss_pred             HHHHHHHHHhhhh
Confidence            4444444555544

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.067  Score=57.95  Aligned_cols=133  Identities=14%  Similarity=0.204  Sum_probs=86.0

Q ss_pred             HHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhh--hC-hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632          394 LSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (530)
Q Consensus       394 ~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~--~~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  469 (530)
                      ..+.++..+..+. .+.+|++|.+.+..+..+.-.  ++ .+.-.+++...+.+++.|...+||+.|+.++.-+...-..
T Consensus      1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence            3456666665443 455799999999999876542  22 2223467888899999999999999999999887765322


Q ss_pred             hHHhhhhHHHHHhhc--cCCChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCCC
Q 009632          470 EWAMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRY  527 (530)
Q Consensus       470 ~~~~~~i~~~l~~~~--~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~~  527 (530)
                      .... .......+..  ...+...+.+|..++|.++-+++-.  .+..+.+..+-.+..|+-
T Consensus      1603 ~~~~-~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~~ 1663 (1710)
T KOG1851|consen 1603 QFVS-DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARESA 1663 (1710)
T ss_pred             ccch-HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCch
Confidence            2221 1222222222  2335566778899999998887632  245555666666666653

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.86  E-value=2.7e-05  Score=43.92  Aligned_cols=30  Identities=43%  Similarity=0.514  Sum_probs=21.3

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAAT  193 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~  193 (530)
                      ++|.+.++++|++|+||.+|+.+++.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            467777777777777777777777777654

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.85  E-value=0.032  Score=63.10  Aligned_cols=291  Identities=12%  Similarity=0.150  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC-ch-----hhhhccHHHH
Q 009632          179 VRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-PQ-----DCVAHILPVI  246 (530)
Q Consensus       179 vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~-----~~~~~~~~~l  246 (530)
                      -|.-+++-|..++.+-..      ...+..+-+.+.+.-.+.+..++..|+..|..++..+- .+     .+.+.++..+
T Consensus      1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076       1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred             CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence            355666666666654322      23344566667776667777899999998888876543 22     2344566666


Q ss_pred             HHhcC-CCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH------HHHH
Q 009632          247 VNFSQ-DKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAI  317 (530)
Q Consensus       247 ~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------~~~~  317 (530)
                      ...+. ..+..+|..+.+++.++....+....  =..++..+.....++++.+-..|.+.+..++...-.      ....
T Consensus      1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076       1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence            65443 46678999999999999887664331  234666666666788888888888888877654211      1122


Q ss_pred             hhhhHhHhHhccCC-cHHHHHHHHHHHHhhccc-----------------------------------cCHHHHHHhHHH
Q 009632          318 QHILPCVKELSSDS-SQHVRSALASVIMGMAPL-----------------------------------LGKDATIEQLLP  361 (530)
Q Consensus       318 ~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~-----------------------------------~~~~~~~~~l~~  361 (530)
                      ..++.++.++.+.. +.++-..++..+..++..                                   .+.+.....-+|
T Consensus      1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076       1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred             HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence            44555565555432 222333333333321000                                   011111122233


Q ss_pred             HHH---HhhcCCChHHHHHHHHhhHHhhhhhchh----HH----HhhHHHHHHHHhc-----------------C-----
Q 009632          362 IFL---SLLKDEFPDVRLNIISKLDQVNQVIGID----LL----SQSLLPAIVELAE-----------------D-----  408 (530)
Q Consensus       362 ~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~----~~~l~~~l~~~~~-----------------~-----  408 (530)
                      ++.   .+..|+..+||..|+..|=++....|..    .+    ..-++|.+..+-.                 +     
T Consensus      1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076       1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence            333   3456899999999999998887777642    22    2234454433210                 0     


Q ss_pred             -CChHHHHHHHHHHHHHHhhhChhh-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632          409 -RHWRVRLAIIEYIPLLASQLGVGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (530)
Q Consensus       409 -~~~~~R~~~~~~l~~l~~~~~~~~-----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  470 (530)
                       ..| ...+...++..++..+..-+     ..+.++..+..+...++..+-.....|+..+....|..
T Consensus      1428 ~~~W-l~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076       1428 QDAW-LYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred             hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence             013 36667777777666554322     23445555555667788889999999999998887765

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.83  E-value=0.0051  Score=66.35  Aligned_cols=302  Identities=15%  Similarity=0.122  Sum_probs=165.3

Q ss_pred             chhcchhHHHh-----hhcccchHHHHHHHHHHHHHHhhcChh------h---hhhhHHHHHHHHhc--CCccchhHHHH
Q 009632           83 HAHVLLPPLET-----LCTVEETCVRDKAVESLCRIGSQMRES------D---LVDWYIPLVKRLAA--GEWFTARVSAC  146 (530)
Q Consensus        83 ~~~~l~~~l~~-----l~~d~~~~vR~~a~~~l~~l~~~~~~~------~---~~~~l~~~l~~l~~--~~~~~~r~~~~  146 (530)
                      ....+.|+...     ++.++|..||-..+-|+..|.....|+      +   +..+++..+..+..  ++.+..+....
T Consensus        42 ~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~ll  121 (1266)
T KOG1525|consen   42 DLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLL  121 (1266)
T ss_pred             hHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHH
Confidence            34555665544     456788999999988999988876552      1   22233444443333  23333444433


Q ss_pred             hHhhhhc-----CCCC-hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH-hh---cCCch
Q 009632          147 GLFHIAY-----PSAP-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LT---QDDQD  216 (530)
Q Consensus       147 ~~l~~l~-----~~~~-~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~---~d~~~  216 (530)
                      .-+..+.     ..-. .+...++...+..+..+..+.-=......+..+....  +....+++..+.. ++   .|...
T Consensus       122 etl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~  199 (1266)
T KOG1525|consen  122 ETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIK  199 (1266)
T ss_pred             HHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccH
Confidence            3333222     1111 2356777777777776665543333333333333222  2222333333332 22   22233


Q ss_pred             hHHHHHHHHHHHHhhhcCch-----------------------------------hhhhccHHHHHHhcCCCCHHHHHHH
Q 009632          217 SVRLLAVEGCAALGKLLEPQ-----------------------------------DCVAHILPVIVNFSQDKSWRVRYMV  261 (530)
Q Consensus       217 ~vr~~a~~~l~~l~~~~~~~-----------------------------------~~~~~~~~~l~~~~~d~~~~vr~~~  261 (530)
                      .-+..|-..+...+..+.+.                                   .....++|.+..-+...+..+|..+
T Consensus       200 ~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a  279 (1266)
T KOG1525|consen  200 EADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKA  279 (1266)
T ss_pred             HHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            33333333333333332210                                   1122367777776777778899999


Q ss_pred             HHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHH
Q 009632          262 ANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL  339 (530)
Q Consensus       262 ~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~  339 (530)
                      ...+|.+...-+....  ...++..|+.-+.|.+++||..+++....+...-+.-.-...+.-.+....-|.+.++|..+
T Consensus       280 ~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v  359 (1266)
T KOG1525|consen  280 VKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQV  359 (1266)
T ss_pred             HHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeE
Confidence            8888887654332222  35677888888899999999999999888776522211112233334434445555555433


Q ss_pred             HHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632          340 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       340 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  388 (530)
                      +-....... +.-..... ++..+...+.|..+.||..|+..|.++.+.
T Consensus       360 ~i~~~~v~~-~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  360 VIVACDVMK-FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             EEEEeehhH-hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            221111110 00111223 777777888999999999999999999874

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.83  E-value=3.9e-05  Score=43.31  Aligned_cols=29  Identities=38%  Similarity=0.426  Sum_probs=17.7

Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632          437 LGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       437 ~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  465 (530)
                      ++|.+.++++|+++.||.+|+.+++.+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            35666666666666666666666666654

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.089  Score=58.16  Aligned_cols=120  Identities=10%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             CChHHHHHHHHHHHHHHhhhCh--------------------h-hH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632          409 RHWRVRLAIIEYIPLLASQLGV--------------------G-FF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (530)
Q Consensus       409 ~~~~~R~~~~~~l~~l~~~~~~--------------------~-~~---~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~  464 (530)
                      +.|..|.-+..++-.+...+..                    . +.   ..+++.+-+..-.+++...|...++.+..+.
T Consensus      1254 prW~Trvfaa~cv~r~i~~c~a~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~L~~vi 1333 (2067)
T KOG1822|consen 1254 PRWPTRVFAAECVLRIINVCEAVSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLESLEEVI 1333 (2067)
T ss_pred             cccchHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHHHHHHH
Confidence            4699999988888744332211                    1 11   1224445555567889999999999999998


Q ss_pred             HHhCh----hH--------HhhhhHHHHHhh-ccCCChHHHHHHHHHHHHHhhh-cChH-HHHhhHHHHHHhhccCCCC
Q 009632          465 EEFGP----EW--------AMQHITPQVLEM-INNPHYLYRMTILRAISLLAPV-MGSE-ITCSRLLPVVINASKDRYL  528 (530)
Q Consensus       465 ~~~~~----~~--------~~~~i~~~l~~~-~~d~~~~vr~~a~~~l~~i~~~-~~~~-~~~~~~~p~l~~~l~D~~~  528 (530)
                      ..+..    ++        ++..+=..+... ..|...+|-..|++..+.++.. +-.+ --...+...|..-+++..+
T Consensus      1334 ~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~dts~dv~a~acqVcS~wigsgv~~dl~dl~rVhqLLvssl~k~~~ 1412 (2067)
T KOG1822|consen 1334 KRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDDTSPDVTAKACQVCSTWIGSGVARDLSDLSRVHQLLVSSLDKSQS 1412 (2067)
T ss_pred             hccCCCCCCCCCchhHHHHHHHHHHHHhchhccCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcccCc
Confidence            87732    21        112222333333 3466888999999988876542 2121 1245566666666665544

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.82  E-value=0.017  Score=62.55  Aligned_cols=322  Identities=15%  Similarity=0.125  Sum_probs=165.7

Q ss_pred             hcCCccchhHHHHhHhhhhcC----CCCh--HHHHHHHHHHHh---hcCCC-Ch--hHHHHHHHHHHHHHhhh--c---c
Q 009632          134 AAGEWFTARVSACGLFHIAYP----SAPD--ILKTELRSIYTQ---LCQDD-MP--MVRRSAASNLGKFAATV--E---P  196 (530)
Q Consensus       134 ~~~~~~~~r~~~~~~l~~l~~----~~~~--~~~~~l~~~l~~---l~~d~-~~--~vR~~a~~~l~~l~~~~--~---~  196 (530)
                      +++++..+|...+-|++.+..    ..+-  ....++...+..   .+.|. +|  .-+...++.+..+...+  .   .
T Consensus        59 L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~  138 (1266)
T KOG1525|consen   59 LKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDC  138 (1266)
T ss_pred             hcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccch
Confidence            456677889877666666543    3321  244555544443   23333 33  33444445554443111  1   1


Q ss_pred             hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH-hc---CCCCHHHHHHHHHHHHHHHHHh
Q 009632          197 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FS---QDKSWRVRYMVANQLYELCEAV  272 (530)
Q Consensus       197 ~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~~---~d~~~~vr~~~~~~l~~l~~~~  272 (530)
                      +.....++..+..+..++-+.--..-...+..+....  +.....++..+.. +.   .|....-+..+-..+...+..+
T Consensus       139 ~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~  216 (1266)
T KOG1525|consen  139 QELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNL  216 (1266)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhh
Confidence            3344556666666665554332222222222222111  1222333333332 22   2333344444444444444332


Q ss_pred             CCcccccchHHHHHHhcC-CC--cHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632          273 GPEPTRMDLVPAYVRLLR-DN--EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (530)
Q Consensus       273 ~~~~~~~~l~~~l~~~l~-d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  349 (530)
                      ..     .+-..+.+.+. +.  -..++.....-+-.+... .+ ..+..++|.+..-+...+..+|..+...++.+...
T Consensus       217 ~~-----~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~-~p-~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~  289 (1266)
T KOG1525|consen  217 ED-----TIANFLNSCLTEYKSRQSSLKIKYHELILELWRI-AP-QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSD  289 (1266)
T ss_pred             ch-----hHHHHHHHHHhhccccccchhhHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence            22     12222222221 11  112222222223333221 11 22356778887777778889999999999988665


Q ss_pred             cCHHHH--HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 009632          350 LGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (530)
Q Consensus       350 ~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~  427 (530)
                      -+...+  .+.++..++..+.|.+.+||..+++...++...-..-.-...+.-.+.....|.+.++|...+-....+.+ 
T Consensus       290 ~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~-  368 (1266)
T KOG1525|consen  290 KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMK-  368 (1266)
T ss_pred             chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhH-
Confidence            544333  56777888888999999999999998888765422111112233334334444444444443222222221 


Q ss_pred             hChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632          428 LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (530)
Q Consensus       428 ~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  466 (530)
                      +....... ++..+.+.+.|+.+.||..|...|.++++.
T Consensus       369 ~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  369 FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            11222223 666777778999999999999999999984

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=97.73  E-value=0.0065  Score=60.57  Aligned_cols=221  Identities=16%  Similarity=0.144  Sum_probs=140.2

Q ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHH--HhcC-----CCCHHHHHHHHHHHHHHHHHhCC
Q 009632          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV--NFSQ-----DKSWRVRYMVANQLYELCEAVGP  274 (530)
Q Consensus       202 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~~~~-----d~~~~vr~~~~~~l~~l~~~~~~  274 (530)
                      +.++.++-...|++.+|-..|-..+..+...+.+..+...++..+.  ..-.     --++.+|..+...|..-....  
T Consensus       237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa--  314 (501)
T PF13001_consen  237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA--  314 (501)
T ss_pred             hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH--
Confidence            4555555566888889999999999888877776666666665555  2111     135667776665555432221  


Q ss_pred             cccccchHHHHHHhcCCC--cHHHHHHHHHHH---HHHHHhhCHHHHHhhhhHhHh----Hhcc--------CCcHHHHH
Q 009632          275 EPTRMDLVPAYVRLLRDN--EAEVRIAAAGKV---TKFCRILNPELAIQHILPCVK----ELSS--------DSSQHVRS  337 (530)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~~~~~~~~~~~~~~l~~~l~----~~~~--------d~~~~vr~  337 (530)
                       .....++..+...+..+  +..+|..+++.+   ......+++... +.+-|.+.    ...+        ..+...|.
T Consensus       315 -~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~  392 (501)
T PF13001_consen  315 -TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRS  392 (501)
T ss_pred             -hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHH
Confidence             11245666666677666  567888888888   777776666532 23333332    2221        23568999


Q ss_pred             HHHHHHHhhccccCHHH-HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH-----HhhHHH-HHHHHhcCCC
Q 009632          338 ALASVIMGMAPLLGKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLP-AIVELAEDRH  410 (530)
Q Consensus       338 ~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~l~~-~l~~~~~~~~  410 (530)
                      .+.++++.++.....-. -.-.++..++..|.++.+++|..+-++|..+...+....-     ....+. .+.....+..
T Consensus       393 ~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~  472 (501)
T PF13001_consen  393 LAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEV  472 (501)
T ss_pred             HHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchh
Confidence            99999999988765432 1235667777778889999999999999999877653211     111111 2223334556


Q ss_pred             hHHHHHHHHHHHHHHh
Q 009632          411 WRVRLAIIEYIPLLAS  426 (530)
Q Consensus       411 ~~~R~~~~~~l~~l~~  426 (530)
                      ..+|..|+.+...+..
T Consensus       473 ~~~R~~avk~an~~fp  488 (501)
T PF13001_consen  473 RSCRYAAVKYANACFP  488 (501)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            7788888888877654

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.72  E-value=0.017  Score=51.88  Aligned_cols=223  Identities=12%  Similarity=0.116  Sum_probs=100.4

Q ss_pred             HhhcCCchhHHHHHHHHHHHHhhhcCchhh----hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCcccccchH
Q 009632          209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRMDLV  282 (530)
Q Consensus       209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~  282 (530)
                      ..++++++.+|..|+..|+.+...+++...    .+.++..+..-+.|  +..-..++.++..+...-  +.+. ...++
T Consensus         6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~~~-~~~i~   82 (262)
T PF14500_consen    6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSPES-AVKIL   82 (262)
T ss_pred             hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCChhh-HHHHH
Confidence            345556666666666666666666654322    22234444444432  222222244554444211  1111 11222


Q ss_pred             HHHHHhcC--CCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhc-cCCcHHHHHHHHHHHHhhccccCHHHHHH
Q 009632          283 PAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIE  357 (530)
Q Consensus       283 ~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  357 (530)
                      ..+.+...  .-....|..+.+.+..+.+.....  .+...++..+.+.+ ..++||.-..+.+.+..+...+....+.+
T Consensus        83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e  162 (262)
T PF14500_consen   83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE  162 (262)
T ss_pred             HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence            22222221  112456777777776666543221  11122333333333 35677776666666666665554333444


Q ss_pred             hHHHHHHHhh--------cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632          358 QLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (530)
Q Consensus       358 ~l~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~  429 (530)
                      .+...+....        +|+..-.|+.-..+|.....  ....+.+..+|.+.+-+.++...++..+++++...+..+|
T Consensus       163 ~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  163 DLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence            4433333332        12211122222222222111  1123345566666666666666666666666666666666


Q ss_pred             hhhHHHH
Q 009632          430 VGFFDDK  436 (530)
Q Consensus       430 ~~~~~~~  436 (530)
                      .+...++
T Consensus       241 ~~~~~~~  247 (262)
T PF14500_consen  241 ADSLSPH  247 (262)
T ss_pred             HHHHHHH
Confidence            5544433

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.71  E-value=0.00075  Score=68.13  Aligned_cols=142  Identities=15%  Similarity=0.144  Sum_probs=69.1

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--h
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--Q  236 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~  236 (530)
                      .++.|.+.+......-.+|.....+|+.+..+.|.+   ...+.++|.+.+.++=++..||..+.+++..+....+.  .
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t  945 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT  945 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence            334444444444333344555555555555544442   23455555555555555555555555555544444332  2


Q ss_pred             hhhhccHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632          237 DCVAHILPVIVNFSQDKS---WRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGK  303 (530)
Q Consensus       237 ~~~~~~~~~l~~~~~d~~---~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (530)
                      .+.+.++|.+..+..|.+   -.||..+.++++.+.+..+.   ..+.+.++..+...+.|+.--||+.|+.+
T Consensus       946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            334445555555544433   44555555555555553322   23344455555555555555555555544

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.69  E-value=0.014  Score=54.15  Aligned_cols=173  Identities=17%  Similarity=0.186  Sum_probs=102.0

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHH
Q 009632          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV  245 (530)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  245 (530)
                      .++...+..+++.||..++.++|-++-. .+ ......++.+.+.++.+++.||..|++++..+....|...+...-.  
T Consensus        30 ~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~--  105 (298)
T PF12719_consen   30 SLILPAVQSSDPAVRELALKCLGLCCLL-DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD--  105 (298)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc--
Confidence            3444677788889999999999888753 22 2234456666666666678899999988888887776532211000  


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh--hCH-HHHHhhhhH
Q 009632          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI--LNP-ELAIQHILP  322 (530)
Q Consensus       246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~--~~~-~~~~~~l~~  322 (530)
                             .+                   .......++..+...+.+.+++++..+++++..+.-.  +.. ..+...++-
T Consensus       106 -------~~-------------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll  159 (298)
T PF12719_consen  106 -------ND-------------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLL  159 (298)
T ss_pred             -------cC-------------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence                   00                   1222345667777777777788888888888776532  222 222233322


Q ss_pred             hHhHhccCCcHHHHHHHHHHHHhhccccC--HHHHHHhHHHHHHHhhc
Q 009632          323 CVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLK  368 (530)
Q Consensus       323 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~  368 (530)
                      ..-.-....+.++|+...-.+..++..-.  ...+...++|.+..+.+
T Consensus       160 ~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~  207 (298)
T PF12719_consen  160 LYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN  207 (298)
T ss_pred             HHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            22222233456788777777777765432  12334445555555444

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.67  E-value=0.01  Score=54.99  Aligned_cols=156  Identities=16%  Similarity=0.192  Sum_probs=94.2

Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH-----------HH
Q 009632          287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-----------AT  355 (530)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----------~~  355 (530)
                      ..+...++.||..+++++|-++-.-. + .....++.+...++..+..+|..+++++..+....|.+           ..
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Lld~-~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~  111 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLLDK-E-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD  111 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhCh-H-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence            45566666777777777766654322 1 12333444444444446667777776666665544432           22


Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh--hchhHHHhhHHHHHHHHhc----CCChHHHHHHHHHHHHHHhhhC
Q 009632          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLG  429 (530)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~----~~~~~~R~~~~~~l~~l~~~~~  429 (530)
                      ...+...+...+.+.++++|..+++.+..+.-.  +..   .+.++..|.-..-    ..+.+.|+..-.++...+..-.
T Consensus       112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~  188 (298)
T PF12719_consen  112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP  188 (298)
T ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence            356778888899989999999999999987532  222   1244444433322    3356888888888887775433


Q ss_pred             --hhhHHHHHHHHHHHHhcC
Q 009632          430 --VGFFDDKLGALCMQWLQD  447 (530)
Q Consensus       430 --~~~~~~~~~~~l~~~l~d  447 (530)
                        .+.+.+-++|.+..+...
T Consensus       189 ~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  189 ENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence              233456677777776543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.084  Score=58.35  Aligned_cols=171  Identities=15%  Similarity=0.147  Sum_probs=114.2

Q ss_pred             HHHhHhhhhcCCCChHHHHHHHHHHHhhcCCC----ChhHHHHHHH--HHHHHHhh---------hcchhhHHHHHHHHH
Q 009632          144 SACGLFHIAYPSAPDILKTELRSIYTQLCQDD----MPMVRRSAAS--NLGKFAAT---------VEPAHLKTDIMSIFE  208 (530)
Q Consensus       144 ~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~----~~~vR~~a~~--~l~~l~~~---------~~~~~~~~~l~~~l~  208 (530)
                      .+..+++.++++++..+.-.++..+.+.....    ...|+..+..  ++..+.++         .+++.+...-+.++.
T Consensus       803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~  882 (2067)
T KOG1822|consen  803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV  882 (2067)
T ss_pred             HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence            45667777888888877777777777655432    2234444333  33333322         233444444556667


Q ss_pred             HhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCC---cccccchHHH
Q 009632          209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP---EPTRMDLVPA  284 (530)
Q Consensus       209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~  284 (530)
                      ..+..+++..|..+.++++.++...+...+...+.+.+..-+.+ .++..|..-.-++|.+-+..|.   ......-+..
T Consensus       883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i  962 (2067)
T KOG1822|consen  883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI  962 (2067)
T ss_pred             hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence            77788899999999999999999999877777666666555554 5565666666667777666543   3333344557


Q ss_pred             HHHhcCCCcH-HHHHHHHHHHHHHHHhhCHH
Q 009632          285 YVRLLRDNEA-EVRIAAAGKVTKFCRILNPE  314 (530)
Q Consensus       285 l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~  314 (530)
                      ++.+..|+.+ .|+..++.++..+....++-
T Consensus       963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~  993 (2067)
T KOG1822|consen  963 LLALATDSTSPVVQTWSLHALALILDSSGPM  993 (2067)
T ss_pred             HHHHhhcCCCchhhhhHHHHHHHHHcCCCce
Confidence            7777788774 99999999999998776654

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.44  E-value=0.13  Score=50.02  Aligned_cols=167  Identities=14%  Similarity=0.033  Sum_probs=107.8

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhCh--Hhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcc
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l   87 (530)
                      +..++..+.+.|...|..+++.|.-++...++  +...+.|+..+.. +.|-++.||+.|..+|..+-..-++++  ..+
T Consensus        93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~  170 (885)
T COG5218          93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRI  170 (885)
T ss_pred             HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHH
Confidence            56788889999999999999999999888876  6666677776666 788999999999999988765434332  333


Q ss_pred             hhHHHh-hhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhH-HHHhHhhhhcCCCChHHHHHHH
Q 009632           88 LPPLET-LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARV-SACGLFHIAYPSAPDILKTELR  165 (530)
Q Consensus        88 ~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~-~~~~~l~~l~~~~~~~~~~~l~  165 (530)
                      ..+|.. +.+|++.+||..|+--+..=-          --.|.+.+-+.|-+-..|. .=.+++..+......+..+.++
T Consensus       171 ~n~l~~~vqnDPS~EVRr~allni~vdn----------sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~  240 (885)
T COG5218         171 VNLLKDIVQNDPSDEVRRLALLNISVDN----------STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL  240 (885)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHeeeCC----------CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh
Confidence            344444 457899999998864332211          1234444434443323333 2344444443332222333333


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHH
Q 009632          166 SIYTQLCQDDMPMVRRSAASNLGKF  190 (530)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l  190 (530)
                       ++...+.|.+..||.++...+..-
T Consensus       241 -l~ewgl~dRe~sv~~a~~d~ia~~  264 (885)
T COG5218         241 -LMEWGLLDREFSVKGALVDAIASA  264 (885)
T ss_pred             -hhhhcchhhhhhHHHHHHHHHHHH
Confidence             445567788888998888877653

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.44  E-value=0.03  Score=53.17  Aligned_cols=126  Identities=17%  Similarity=0.180  Sum_probs=86.7

Q ss_pred             ChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh----c--CCChHHHHHHHHHHHHHHhhhC---------------
Q 009632          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA----E--DRHWRVRLAIIEYIPLLASQLG---------------  429 (530)
Q Consensus       371 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~----~--~~~~~~R~~~~~~l~~l~~~~~---------------  429 (530)
                      ....|.+|.+.+..+++..+.... +.+...+..++    +  ..+|+-+.+|+..++.++....               
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            456889999999999988764321 22222222222    2  3479999999999999987542               


Q ss_pred             hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHH
Q 009632          430 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAI  499 (530)
Q Consensus       430 ~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l  499 (530)
                      .++|..+++|-+. .-.+..+-+|..|++.+..+...+.++ ....++|.+.+++++++.-|+..|+.++
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            2345667777776 333567889999999998887777655 3467999999999999999999998765

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.41  E-value=0.0057  Score=62.90  Aligned_cols=184  Identities=16%  Similarity=0.061  Sum_probs=123.3

Q ss_pred             hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-
Q 009632          122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-  196 (530)
Q Consensus       122 ~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-  196 (530)
                      +...+++.+..      ..-|.-|..+++.+...-+-.    .-=.|+|.++++++++..+.|-..+-.-+.+...=+. 
T Consensus       473 QLPiVLQVLLS------QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SC  546 (1387)
T KOG1517|consen  473 QLPIVLQVLLS------QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSC  546 (1387)
T ss_pred             hcchHHHHHHH------HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchh
Confidence            34445555542      123556777777665433222    1234889999999999999999888877777653211 


Q ss_pred             --hhhHHHHHHHHHHhhcC-C--chhHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 009632          197 --AHLKTDIMSIFEDLTQD-D--QDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYE  267 (530)
Q Consensus       197 --~~~~~~l~~~l~~~~~d-~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~  267 (530)
                        +.+.+....++.+.+.+ .  +++-|..|+-.|+.+...+.-   +.+...++..+.+.++|+ .|-.|.-++-+||.
T Consensus       547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~  626 (1387)
T KOG1517|consen  547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR  626 (1387)
T ss_pred             HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence              22233233344445555 2  358899999999999887542   334455777777888884 79999999999999


Q ss_pred             HHHHhCCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632          268 LCEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (530)
Q Consensus       268 l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  311 (530)
                      +=+.+...-.   ....-..+..++.|+.|+||.+|+-+|+.+....
T Consensus       627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence            8765432211   1233455677889999999999999999998763

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.40  E-value=0.018  Score=59.81  Aligned_cols=219  Identities=14%  Similarity=0.115  Sum_probs=109.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhh-CH-HHHHhhhhHhHhHhcc
Q 009632          253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRIL-NP-ELAIQHILPCVKELSS  329 (530)
Q Consensus       253 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~-~~-~~~~~~l~~~l~~~~~  329 (530)
                      ..+..|....++++..+.        ..-+..+.+.+.... ...  .+...+..+.... .+ ......+.+.+..-..
T Consensus       376 ~~~~~r~~~lDal~~aGT--------~~av~~i~~~I~~~~~~~~--ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~  445 (618)
T PF01347_consen  376 KKEQARKIFLDALPQAGT--------NPAVKFIKDLIKSKKLTDD--EAAQLLASLPFHVRRPTEELLKELFELAKSPKV  445 (618)
T ss_dssp             --HHHHHHHHHHHHHH-S--------HHHHHHHHHHHHTT-S-HH--HHHHHHHHHHHT-----HHHHHHHHHHHT-HHH
T ss_pred             cHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccc
Confidence            356677777777766552        222333444443322 111  1333343333322 22 2222333333321111


Q ss_pred             CCcHHHHHHHHHHHHhhcccc-CH---------------HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH
Q 009632          330 DSSQHVRSALASVIMGMAPLL-GK---------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (530)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~-~~---------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  393 (530)
                      ..+..++.+++-+++.+.... ..               +.+.+.+...+.......+...+..++.+|+++..      
T Consensus       446 ~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------  519 (618)
T PF01347_consen  446 KNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------  519 (618)
T ss_dssp             HT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------
T ss_pred             cCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------
Confidence            244567777777776654321 11               12233444444444456778889999999988753      


Q ss_pred             HHhhHHHHHHHHhcCC---ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632          394 LSQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (530)
Q Consensus       394 ~~~~l~~~l~~~~~~~---~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  470 (530)
                        ...++.+..++.+.   +..+|.+|+.++..++... ++...+.++|++.+-  ....+||.+|+..|-.   .-. .
T Consensus       520 --~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~---~~P-~  590 (618)
T PF01347_consen  520 --PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNT--TEDPEVRIAAYLILMR---CNP-S  590 (618)
T ss_dssp             --GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHHHHHHHHH---T----
T ss_pred             --chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCC--CCChhHHHHHHHHHHh---cCC-C
Confidence              35677777776665   6789999999998774432 223334444444332  2456799999877533   211 1


Q ss_pred             HHhhhhHHHHHhh-ccCCChHHHHHHHHHH
Q 009632          471 WAMQHITPQVLEM-INNPHYLYRMTILRAI  499 (530)
Q Consensus       471 ~~~~~i~~~l~~~-~~d~~~~vr~~a~~~l  499 (530)
                         ..++..+... -.+++..|+......|
T Consensus       591 ---~~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  591 ---PSVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             ---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence               2234444443 3678888887766554

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=97.38  E-value=0.033  Score=49.45  Aligned_cols=166  Identities=13%  Similarity=0.091  Sum_probs=104.6

Q ss_pred             hhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh---
Q 009632           94 LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ---  170 (530)
Q Consensus        94 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~---  170 (530)
                      +.+..++......+++|..++..-.  .....+...+..+.+.+....+..+.+++..++..-+..+ +.+.+.+..   
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~   85 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLIL   85 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHh
Confidence            5556677777777777777776532  3444566666666666665566667777777665433221 333333333   


Q ss_pred             ------hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhhh--cCchhhhhc
Q 009632          171 ------LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKL--LEPQDCVAH  241 (530)
Q Consensus       171 ------l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~  241 (530)
                            .-.+..++...+.+.++..++...+.  ...++++.+...+ .+.++.++..+++++..+++.  ++-...+..
T Consensus        86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~v  163 (234)
T PF12530_consen   86 RIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKV  163 (234)
T ss_pred             hcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence                  12355788888888889999887666  6778999999999 788889999999999999843  221222333


Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYE  267 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~  267 (530)
                      +.+.+   -.+..+.+-...+..+.-
T Consensus       164 l~~~l---~~~~rp~v~~~l~~l~~l  186 (234)
T PF12530_consen  164 LQKKL---SLDYRPLVLKSLCSLFAL  186 (234)
T ss_pred             HHHhc---CCccchHHHHHHHHHHHH
Confidence            33322   334555555555444443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.36  E-value=0.058  Score=55.48  Aligned_cols=151  Identities=15%  Similarity=0.104  Sum_probs=87.6

Q ss_pred             CcHHHHHHHHHHHHhhcccc-C---H--HHHHHhHHHHHHH----hhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHH
Q 009632          331 SSQHVRSALASVIMGMAPLL-G---K--DATIEQLLPIFLS----LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  400 (530)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~~-~---~--~~~~~~l~~~l~~----~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  400 (530)
                      ++..+|..+.-+++.+.... .   .  ......+.+.+..    ..++.+...+..++.+||++..-        ..++
T Consensus       409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--------~~i~  480 (574)
T smart00638      409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--------SSIK  480 (574)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--------hHHH
Confidence            45678888877777765421 1   0  1222344444444    44456777788888888886542        2333


Q ss_pred             HHHHHhc---CCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhH
Q 009632          401 AIVELAE---DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  477 (530)
Q Consensus       401 ~l~~~~~---~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~  477 (530)
                      .+..++.   +.+..+|..|+.++..++..... ...+.++|++.+  .+...+||.+|+..+-.   . .+.   ...+
T Consensus       481 ~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~---t-~P~---~~~l  550 (574)
T smart00638      481 VLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-KVQEVLLPIYLN--RAEPPEVRMAAVLVLME---T-KPS---VALL  550 (574)
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHcC--CCCChHHHHHHHHHHHh---c-CCC---HHHH
Confidence            3333333   23578999999999988764433 233444454432  23567899999987643   2 111   2234


Q ss_pred             HHHHhh-ccCCChHHHHHHHHHH
Q 009632          478 PQVLEM-INNPHYLYRMTILRAI  499 (530)
Q Consensus       478 ~~l~~~-~~d~~~~vr~~a~~~l  499 (530)
                      ..+... -.+++..|+......|
T Consensus       551 ~~ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      551 QRIAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             HHHHHHHhhcCcHHHHHHhHHhh
Confidence            444443 4577888887665543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.29  E-value=0.19  Score=48.44  Aligned_cols=195  Identities=11%  Similarity=0.109  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHH
Q 009632          105 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA  184 (530)
Q Consensus       105 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~  184 (530)
                      ..+..+-.+....+.++..++++-++..++.++...++...     .... ..+    .....+..+++.+++-+...++
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~-----~~~~-~~~----~~~~~fl~lL~~~d~~i~~~a~  122 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFH-----DDAL-LKK----KTWEPFFNLLNRQDQFIVHMSF  122 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHH-----HHhh-ccc----cchHHHHHHHcCCchhHHHHHH
Confidence            44455555666666667777777777777766432222211     1100 011    1223333466677888999999


Q ss_pred             HHHHHHHhhhcc---hhhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCc-hhh-hhccHHHHHHhcCCC--CHH
Q 009632          185 SNLGKFAATVEP---AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP-QDC-VAHILPVIVNFSQDK--SWR  256 (530)
Q Consensus       185 ~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~-~~~-~~~~~~~l~~~~~d~--~~~  256 (530)
                      ..++.++..-..   ....+.+++.+.+.+... +...+..++.++..+...-.- ..+ ....++.+..+++..  +.+
T Consensus       123 ~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q  202 (429)
T cd00256         123 SILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ  202 (429)
T ss_pred             HHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence            999888764322   122334555666655543 345566677777777654221 111 122455555555432  223


Q ss_pred             HHHHHHHHHHH--HHHHhCCcccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHH
Q 009632          257 VRYMVANQLYE--LCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR  309 (530)
Q Consensus       257 vr~~~~~~l~~--l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~  309 (530)
                      ....++-++=.  +-...........++|.+.+.+++.. ..|-.-++..+..+..
T Consensus       203 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         203 LQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            33322222211  11110011112457777777776543 2233334444444443

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.29  E-value=0.056  Score=56.24  Aligned_cols=120  Identities=15%  Similarity=0.150  Sum_probs=57.9

Q ss_pred             chhHHHHHHHHHHHHhhhcCch----------------hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 009632          215 QDSVRLLAVEGCAALGKLLEPQ----------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR  278 (530)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~----------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  278 (530)
                      ++.++..|+-+++.+....-..                .+.+.+.+.+....+..+...+..++++||+++        .
T Consensus       448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g--------~  519 (618)
T PF01347_consen  448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG--------H  519 (618)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred             ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--------C
Confidence            3456777776666665432111                122222333333333445556666666666664        2


Q ss_pred             cchHHHHHHhcCCC---cHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHh
Q 009632          279 MDLVPAYVRLLRDN---EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG  345 (530)
Q Consensus       279 ~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~  345 (530)
                      ...++.+...+.+.   ...+|.+|+.+|..+.... ++...+.++|.+.+-  ..+..+|.++...+..
T Consensus       520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNT--TEDPEVRIAAYLILMR  586 (618)
T ss_dssp             GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHHHHHHHHH
T ss_pred             chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCC--CCChhHHHHHHHHHHh
Confidence            34556666655544   4566777777666553322 333334555555432  2234566666544433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.013  Score=52.02  Aligned_cols=163  Identities=12%  Similarity=0.105  Sum_probs=108.2

Q ss_pred             HHHHhhcCCChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH--HHH
Q 009632          362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKL  437 (530)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~--~~~  437 (530)
                      -.+..|.+++|......+..+..+......  ......++..+.+.++++...+-.+|+.+++.+.+.++.....  +.+
T Consensus        92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~l  171 (334)
T KOG2933|consen   92 QALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDL  171 (334)
T ss_pred             HHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666676666666666665543321  1112456666777788888889999999999998888765543  223


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh----HHHHh
Q 009632          438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----EITCS  513 (530)
Q Consensus       438 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~  513 (530)
                      +-.++.--.+...-||+.|-++|..++....+    ..+++.+...+.+.+.++|..++..+.+....+|=    +.+..
T Consensus       172 v~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~  247 (334)
T KOG2933|consen  172 VTQLLHKASQDNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSC  247 (334)
T ss_pred             HHHHHhhhcccchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHH
Confidence            33333333455667899999999888877653    34667777778888889999888888888777652    22333


Q ss_pred             hHHHHHHhhccCCCC
Q 009632          514 RLLPVVINASKDRYL  528 (530)
Q Consensus       514 ~~~p~l~~~l~D~~~  528 (530)
                      ...+.+..-+.|+.|
T Consensus       248 dl~~a~~~~~~d~Lp  262 (334)
T KOG2933|consen  248 DLSRAAQEQGSDKLP  262 (334)
T ss_pred             HHHHHHHhhhccccc
Confidence            444666666666655

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.0086  Score=53.17  Aligned_cols=173  Identities=15%  Similarity=0.129  Sum_probs=108.1

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhH
Q 009632          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  359 (530)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  359 (530)
                      +...+..|.+.+|+....++..+..++..-...  ..+..++..+.+-+++....|-.+++.++..+.+.++... .+.+
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~l  168 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQEL  168 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            333455566666777766666666665433211  1223333344444556556666777777777666555322 2233


Q ss_pred             HHHHHHhh---cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh----hh
Q 009632          360 LPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GF  432 (530)
Q Consensus       360 ~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~----~~  432 (530)
                      -..+..++   .+++..||+.|-.+|..+.....+.    .+++.+...+++.+.++|..+..++......+|.    .+
T Consensus       169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~  244 (334)
T KOG2933|consen  169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQ  244 (334)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhH
Confidence            33333333   3556789999999999998887764    4555665667888999999999999888777762    23


Q ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632          433 FDDKLGALCMQWLQDKVYSIRDAAANN  459 (530)
Q Consensus       433 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~  459 (530)
                      +.....+.+.+-+.|+-+.+|++|=..
T Consensus       245 ~~~dl~~a~~~~~~d~Lp~~~~~a~~~  271 (334)
T KOG2933|consen  245 GSCDLSRAAQEQGSDKLPELREAARFV  271 (334)
T ss_pred             hHHHHHHHHHhhhcccccccccchhHH
Confidence            445666777777788777777555433

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.33  Score=48.85  Aligned_cols=380  Identities=12%  Similarity=0.020  Sum_probs=207.1

Q ss_pred             HHhHhhhhcCCCChHHHHHHHHHHHhhcC-----C---CChhHHHHHHHHHHHHHhhhcch-----hhHHHHHHHHHHhh
Q 009632          145 ACGLFHIAYPSAPDILKTELRSIYTQLCQ-----D---DMPMVRRSAASNLGKFAATVEPA-----HLKTDIMSIFEDLT  211 (530)
Q Consensus       145 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~-----d---~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~  211 (530)
                      +..++..+..+-++...+.+++.+...+.     +   .++.-.+.|...++.+...+.+.     .....+++...-..
T Consensus       390 al~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f  469 (970)
T COG5656         390 ALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF  469 (970)
T ss_pred             HHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh
Confidence            33444444445555567778888877662     2   23455667777777777644432     12233556666677


Q ss_pred             cCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHH---
Q 009632          212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVR---  287 (530)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~---  287 (530)
                      .++.--.|..|.+.+..+..-++.......+.....+.+++.+-.|+-.++.++..+...-.-.. ...++.+...+   
T Consensus       470 ~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLs  549 (970)
T COG5656         470 RSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLS  549 (970)
T ss_pred             cCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHH
Confidence            88888999999999999987777766666666777777888888899999998887775432211 22333333333   


Q ss_pred             hcCCCcHHHHHHHHHHH-HHHHHhhCHH--HHHhhhhHhH----hHhccCC---------cHHHHHHHHHHHHhhccccC
Q 009632          288 LLRDNEAEVRIAAAGKV-TKFCRILNPE--LAIQHILPCV----KELSSDS---------SQHVRSALASVIMGMAPLLG  351 (530)
Q Consensus       288 ~l~d~~~~vr~~a~~~l-~~~~~~~~~~--~~~~~l~~~l----~~~~~d~---------~~~vr~~~~~~l~~l~~~~~  351 (530)
                      +-++=+-++-...++.+ +.+.+.+.+-  .+...+...+    ..++.++         ......++++++.++.-.+.
T Consensus       550 LSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle  629 (970)
T COG5656         550 LSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE  629 (970)
T ss_pred             hcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc
Confidence            33444444444444333 2233322221  1222333322    2222222         12233444455555443333


Q ss_pred             HH-----HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-hhHHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHH
Q 009632          352 KD-----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLL  424 (530)
Q Consensus       352 ~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~~~~~-~~R~~~~~~l~~l  424 (530)
                      ..     .....+.|.+.-.++++-.++-..+++.+....-... ...+...+...+.+...++.. ..-..+.-++.++
T Consensus       630 n~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nf  709 (970)
T COG5656         630 NRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNF  709 (970)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            21     2344566777777777767777777666654321110 012223444445555555442 3345566667776


Q ss_pred             HhhhChhh-----HHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc------cCCChHH
Q 009632          425 ASQLGVGF-----FDDKLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNPHYLY  491 (530)
Q Consensus       425 ~~~~~~~~-----~~~~~~~~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~------~d~~~~v  491 (530)
                      ...-+.++     +..-+..+....+...+.  +=+..+++.+..++-+++.+.. ++.+|.+.+..      .|+....
T Consensus       710 ityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll-~qy~plfi~vags~l~~~dElg~~  788 (970)
T COG5656         710 ITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELL-SQYLPLFISVAGSGLKMIDELGPA  788 (970)
T ss_pred             HHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhH-HhhhHHHHHHHhhhhhccccccch
Confidence            65443333     334456666666665444  5578888888888888776533 33555554432      3444444


Q ss_pred             HHHHHHHHHHHhhhcChH-----HHHhhHHHHHHhhccC
Q 009632          492 RMTILRAISLLAPVMGSE-----ITCSRLLPVVINASKD  525 (530)
Q Consensus       492 r~~a~~~l~~i~~~~~~~-----~~~~~~~p~l~~~l~D  525 (530)
                      +..+++.+-+-.-.-+.+     .......+++..+.++
T Consensus       789 sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~  827 (970)
T COG5656         789 SVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQ  827 (970)
T ss_pred             hhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhc
Confidence            555555544332222221     1245667777777666

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.17  E-value=0.14  Score=53.34  Aligned_cols=224  Identities=16%  Similarity=0.120  Sum_probs=148.0

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-ccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh---CHH
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL---NPE  314 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---~~~  314 (530)
                      =+|++.+.+-+  ...|.-++..|+.+... |+ ...   .-.+.|+.+++|..+-.+.|-..+-....+...-   ..+
T Consensus       473 QLPiVLQVLLS--QvHRlRAL~LL~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d  549 (1387)
T KOG1517|consen  473 QLPIVLQVLLS--QVHRLRALVLLARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD  549 (1387)
T ss_pred             hcchHHHHHHH--HHHHHHHHHHHHHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH
Confidence            34444443332  33455566666665542 21 111   1258999999999999999887776666665432   122


Q ss_pred             HHHhhhhHhHhHhccC---CcHHHHHHHHHHHHhhccccC--H-HHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhh
Q 009632          315 LAIQHILPCVKELSSD---SSQHVRSALASVIMGMAPLLG--K-DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQ  387 (530)
Q Consensus       315 ~~~~~l~~~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~--~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~  387 (530)
                      .+.+..-.++.+.+.+   -++.-|..++..+..+...+.  . ..+...++.+++..|+|+ .+-.|+=++-+|+.+-+
T Consensus       550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~  629 (1387)
T KOG1517|consen  550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE  629 (1387)
T ss_pred             HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence            2333333344444443   235788888888888877653  3 345667888999999995 68899999999999988


Q ss_pred             hhchhHH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh------------------HHHHHHH----HHH
Q 009632          388 VIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF------------------FDDKLGA----LCM  442 (530)
Q Consensus       388 ~~~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~------------------~~~~~~~----~l~  442 (530)
                      .+....+   .......|..+++|+-.+||.+|+.+++.+......++                  ..+++++    .+.
T Consensus       630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll  709 (1387)
T KOG1517|consen  630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLL  709 (1387)
T ss_pred             hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHH
Confidence            7654433   23445567777899999999999999999987531100                  0123333    466


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632          443 QWLQDKVYSIRDAAANNLKRLAEEFG  468 (530)
Q Consensus       443 ~~l~d~~~~Vr~~a~~~l~~l~~~~~  468 (530)
                      ..++|..+-||.+.+..+..++..+.
T Consensus       710 ~~vsdgsplvr~ev~v~ls~~~~g~~  735 (1387)
T KOG1517|consen  710 ALVSDGSPLVRTEVVVALSHFVVGYV  735 (1387)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHhhH
Confidence            77889999999999999988876543

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.34  Score=48.79  Aligned_cols=486  Identities=13%  Similarity=0.128  Sum_probs=229.4

Q ss_pred             cHHHHHHHhc--ChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCc------
Q 009632           10 PIAVLIDELK--NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV------   81 (530)
Q Consensus        10 ~~~~l~~~l~--~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~------   81 (530)
                      ++...+....  +.|+..|+.|+..+.++-.   ....++-....+.+-. .++.+|-..-+.|...++.--++      
T Consensus         4 diEqav~a~ndp~vdsa~KqqA~~y~~qiKs---Sp~aw~Icie~l~~~t-s~d~vkf~clqtL~e~vrekyne~nl~el   79 (980)
T KOG2021|consen    4 DIEQAVNAVNDPRVDSATKQQAIEYLNQIKS---SPNAWEICIELLINET-SNDLVKFYCLQTLIELVREKYNEANLNEL   79 (980)
T ss_pred             HHHHHHHhhCCCcccHHHHHHHHHHHHhhcC---CccHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHhhccCCHHHH
Confidence            3455555555  3588999999999988733   2334444455554422 45555554444444333311110      


Q ss_pred             -cchhcchhHHHhh-hccc----chHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccc-hhHH--HHhHh-hh
Q 009632           82 -EHAHVLLPPLETL-CTVE----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFT-ARVS--ACGLF-HI  151 (530)
Q Consensus        82 -~~~~~l~~~l~~l-~~d~----~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~-~r~~--~~~~l-~~  151 (530)
                       -....+...+... +.++    .+-++.++...+..+.-..-+.....+...++..+..+.... +-..  .+..+ .+
T Consensus        80 qlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsE  159 (980)
T KOG2021|consen   80 QLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE  159 (980)
T ss_pred             HHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence             0123344444332 2233    567888888888877665444333333444444443333211 1110  01111 01


Q ss_pred             hcC----CCCh----------HHHHH----HHHHHHhh----cCCCChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHH
Q 009632          152 AYP----SAPD----------ILKTE----LRSIYTQL----CQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFE  208 (530)
Q Consensus       152 l~~----~~~~----------~~~~~----l~~~l~~l----~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~  208 (530)
                      ++.    +-++          ..+++    +....-++    -+..+|.+--.++++++.+...+.-.. .-+..++.+.
T Consensus       160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy  239 (980)
T KOG2021|consen  160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLY  239 (980)
T ss_pred             hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHH
Confidence            111    1111          11222    22222222    122378888888999998887665422 2345667777


Q ss_pred             HhhcCCchhHHHHHHHHHHHHhhh-cCchhhhhccHHHHHHh-------cCC--CCHHHHHHHHHHHHHHHHHhCCcccc
Q 009632          209 DLTQDDQDSVRLLAVEGCAALGKL-LEPQDCVAHILPVIVNF-------SQD--KSWRVRYMVANQLYELCEAVGPEPTR  278 (530)
Q Consensus       209 ~~~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~~-------~~d--~~~~vr~~~~~~l~~l~~~~~~~~~~  278 (530)
                      +++.  -+++|.+|..++-.+... ..|.+..+ ++..++..       ..|  .+..+-    ..+..+..++|-+.. 
T Consensus       240 ~fl~--ieelR~aac~cilaiVsKkMkP~dKL~-lln~L~q~l~lfg~~s~dq~~d~df~----e~vskLitg~gvel~-  311 (980)
T KOG2021|consen  240 KFLN--IEELRIAACNCILAIVSKKMKPMDKLA-LLNMLNQTLELFGYHSADQMDDLDFW----ESVSKLITGFGVELT-  311 (980)
T ss_pred             HHHh--HHHHHHHHHHHHHHHHhcCCChhHHHH-HHHHHHHHHHHHhhhccccccCchHH----HHHHHHHhhcceeee-
Confidence            7776  467999999998887654 33322111 22323111       112  222222    233444444443321 


Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc------C-
Q 009632          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL------G-  351 (530)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~------~-  351 (530)
                          -...++-+..++.++..+...+-.             ++|++.+.+.+....+-..+...+..+...+      . 
T Consensus       312 ----~i~s~lnseld~~~kqn~l~~ll~-------------~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~  374 (980)
T KOG2021|consen  312 ----IIISQLNSELDTLYKQNVLSILLE-------------IVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSS  374 (980)
T ss_pred             ----hhHhhhhhccCHHHHHHHHHHHHH-------------HHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence                112222233333444433332221             2334444333333222222222222111100      0 


Q ss_pred             H-HHHHHhHHH-HHHHhh------cCCC----------hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH---HHhcCCC
Q 009632          352 K-DATIEQLLP-IFLSLL------KDEF----------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV---ELAEDRH  410 (530)
Q Consensus       352 ~-~~~~~~l~~-~l~~~l------~d~~----------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~---~~~~~~~  410 (530)
                      + ......++. .+.+.-      +|++          .++|...-..+ ..+..+.++.+...+-..+.   ...+..+
T Consensus       375 ~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fq-dti~~idpsl~l~~Ir~slS~al~ns~e~s  453 (980)
T KOG2021|consen  375 PQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQ-DTIVVIDPSLFLNNIRQSLSAALMNSKEES  453 (980)
T ss_pred             hhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHhcCCcch
Confidence            0 001111111 111111      1111          24555543333 33333444443333333332   3345668


Q ss_pred             hHHHHHHHHHHHHHHhhhChhhH------------HHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhh
Q 009632          411 WRVRLAIIEYIPLLASQLGVGFF------------DDKLGALCMQ--WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  476 (530)
Q Consensus       411 ~~~R~~~~~~l~~l~~~~~~~~~------------~~~~~~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i  476 (530)
                      |..-+.|+..+-.+++.+....+            ...+++.++.  ....+++.|...-.+.+-.....+..+   ..-
T Consensus       454 wqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~  530 (980)
T KOG2021|consen  454 WQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQK  530 (980)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhh
Confidence            99999999999999887643321            1233444333  244567777777777665544444322   335


Q ss_pred             HHHHHhhc------cCCChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCCCC
Q 009632          477 TPQVLEMI------NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRYL  528 (530)
Q Consensus       477 ~~~l~~~~------~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~~~  528 (530)
                      +|.+...+      .+.+..||..+.+.+.++.+.+.+.  .+.+.++.-+..+++-++|
T Consensus       531 ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vt  590 (980)
T KOG2021|consen  531 IPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVT  590 (980)
T ss_pred             hHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            77766653      3458899999999999999886543  2345555555555544443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.16  E-value=0.088  Score=59.71  Aligned_cols=268  Identities=14%  Similarity=0.086  Sum_probs=155.2

Q ss_pred             hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh-hh------hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCC
Q 009632           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SD------LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (530)
Q Consensus        84 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~------~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~  156 (530)
                      |..+.+.+.....+++..++..|+.+|.+++..+-+ +.      ...++-|+..-+.+..+..+|....+++..+....
T Consensus      1135 W~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~ 1214 (1780)
T PLN03076       1135 WHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR 1214 (1780)
T ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            344555566654566788999999999998775543 22      23445555555555667889999988888766543


Q ss_pred             ChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHhhcCC-chhHHHHHHHHH
Q 009632          157 PDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGC  226 (530)
Q Consensus       157 ~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l  226 (530)
                      +..   -|+.++..+.....++++.+=..+.+.+..+....-.      .....+++.-+.++.... +.++-..|+..+
T Consensus      1215 ~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL 1294 (1780)
T PLN03076       1215 VNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFL 1294 (1780)
T ss_pred             HhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHH
Confidence            333   4677888888777788888778888888776643211      122344555565655433 234545555555


Q ss_pred             HHHhhhcC-----------------------------------ch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009632          227 AALGKLLE-----------------------------------PQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYEL  268 (530)
Q Consensus       227 ~~l~~~~~-----------------------------------~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l  268 (530)
                      ..++..+-                                   .+   .+|=.++-.+..++.|....||..+.+.|-.+
T Consensus      1295 ~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~i 1374 (1780)
T PLN03076       1295 RFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDT 1374 (1780)
T ss_pred             HHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            54422220                                   00   11222334444557788999999999999888


Q ss_pred             HHHhCCccc--------ccchHHHHHHhcC-----------------C-C----cHHHHHHHHHHHHHHHHhhCH-----
Q 009632          269 CEAVGPEPT--------RMDLVPAYVRLLR-----------------D-N----EAEVRIAAAGKVTKFCRILNP-----  313 (530)
Q Consensus       269 ~~~~~~~~~--------~~~l~~~l~~~l~-----------------d-~----~~~vr~~a~~~l~~~~~~~~~-----  313 (530)
                      ....|....        ...+.|++..+-.                 + +    .......+..++..++..+..     
T Consensus      1375 L~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L 1454 (1780)
T PLN03076       1375 LRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV 1454 (1780)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887776543        2235555433210                 0 0    011233444444444433321     


Q ss_pred             HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC
Q 009632          314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG  351 (530)
Q Consensus       314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  351 (530)
                      ..+++.++..+..++..++..+-.....++..+....|
T Consensus      1455 ~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076       1455 NPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence            12345555555566666777666666666666654443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.12  E-value=0.29  Score=47.20  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             HHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhC--hhHH-hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          437 LGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFG--PEWA-MQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       437 ~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~--~~~~-~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      ++..+.+++. ..++.+-.-||.=+|.+++.++  .... .-.....++++++++|.+||-.|+.++..++.
T Consensus       354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            5566667763 3456677888999999999873  2221 12356678889999999999999999998753

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=97.11  E-value=0.0065  Score=44.40  Aligned_cols=82  Identities=23%  Similarity=0.281  Sum_probs=64.8

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhc-chhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccH
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  243 (530)
                      +...+..++|+.+.||..++..|..++..-. .....+.++..+.+.+.|+++-|-.+|++++..++...+..     ++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-----vl   79 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-----VL   79 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----HH
Confidence            3445566789999999999999999998766 55556788999999999999999999999999999877643     55


Q ss_pred             HHHHHhcC
Q 009632          244 PVIVNFSQ  251 (530)
Q Consensus       244 ~~l~~~~~  251 (530)
                      |.+.+...
T Consensus        80 ~~L~~~y~   87 (92)
T PF10363_consen   80 PILLDEYA   87 (92)
T ss_pred             HHHHHHHh
Confidence            55554433

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.10  E-value=0.36  Score=48.11  Aligned_cols=129  Identities=16%  Similarity=0.110  Sum_probs=87.1

Q ss_pred             HhhHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhCh
Q 009632          395 SQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP  469 (530)
Q Consensus       395 ~~~l~~~l~~~~~~----~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~  469 (530)
                      ...+.|.+.+.+++    ++.....+|--++..+. +++.+++.+ =+|.+...+. .|.|.+|..|.-.+|.+.-.+..
T Consensus       890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klM-ClS~~fc~e-hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLM-CLSFEFCSE-HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHH-HHhHHHHHH-HHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            34556667777766    46677777777776653 345555544 4677777665 88999999999999998766542


Q ss_pred             hHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCCCC
Q 009632          470 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLN  529 (530)
Q Consensus       470 ~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~~~  529 (530)
                        ..++.-..+.+.+.|.+..||.+++..+..++-+ |.-.+ .--+|.+..+++|+...
T Consensus       968 --~~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq~KV-KGqlg~ma~~L~deda~ 1023 (1128)
T COG5098         968 --TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQLKV-KGQLGKMALLLTDEDAE 1023 (1128)
T ss_pred             --hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cceee-ccchhhhHhhccCCcch
Confidence              2355677788889999999999999988876542 11111 11256677777776543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.07  E-value=0.13  Score=49.02  Aligned_cols=140  Identities=17%  Similarity=0.240  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc------CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhh
Q 009632          294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  367 (530)
Q Consensus       294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  367 (530)
                      ..-|.+|...+..+++..+... .+.+...+..+++      ..+|+-+.+++..++.++........            
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~------------  291 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS------------  291 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT------------
T ss_pred             CCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC------------
Confidence            4568888888888888765442 1333333333332      46899999999999888754321000            


Q ss_pred             cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC
Q 009632          368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD  447 (530)
Q Consensus       368 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d  447 (530)
                        +...+     ..+-++.     +.+...++|-|. --.+..+-.|..|+..+..+...++++.. ..++|.+.+++.+
T Consensus       292 --Gvt~~-----~~~v~v~-----~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~  357 (370)
T PF08506_consen  292 --GVTQT-----NELVDVV-----DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQS  357 (370)
T ss_dssp             --B-S-B------TTS-HH-----HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTS
T ss_pred             --Ccccc-----cccccHH-----HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCC
Confidence              00000     0000111     122345556555 23344566777777777777777766544 3477778888887


Q ss_pred             CcHHHHHHHHHHH
Q 009632          448 KVYSIRDAAANNL  460 (530)
Q Consensus       448 ~~~~Vr~~a~~~l  460 (530)
                      ++..|+..|+.++
T Consensus       358 ~~~vv~tyAA~~i  370 (370)
T PF08506_consen  358 SSYVVHTYAAIAI  370 (370)
T ss_dssp             S-HHHHHHHHHHH
T ss_pred             CCcchhhhhhhhC
Confidence            7777887777664

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=97.03  E-value=0.011  Score=43.20  Aligned_cols=84  Identities=18%  Similarity=0.112  Sum_probs=64.1

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHhhhC-hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHH
Q 009632          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (530)
Q Consensus       400 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~  478 (530)
                      ......+.|+...+|..++..+..+...-. .....+.++..++..+.|+++-|=.+|++++..++..++     ..++|
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~   80 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLP   80 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHH
Confidence            344455678888899999999888887666 444456788888889999999999999999998887764     44777


Q ss_pred             HHHhhccCCC
Q 009632          479 QVLEMINNPH  488 (530)
Q Consensus       479 ~l~~~~~d~~  488 (530)
                      .+.+.+.|++
T Consensus        81 ~L~~~y~~~~   90 (92)
T PF10363_consen   81 ILLDEYADPS   90 (92)
T ss_pred             HHHHHHhCcc
Confidence            7777666553

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=96.94  E-value=0.054  Score=55.68  Aligned_cols=134  Identities=15%  Similarity=0.069  Sum_probs=84.3

Q ss_pred             HHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhchh------HHHhhHHHHHHHH----hcCCChHHHHHHHHHHHHH
Q 009632          359 LLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVEL----AEDRHWRVRLAIIEYIPLL  424 (530)
Q Consensus       359 l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~----~~~~~~~~R~~~~~~l~~l  424 (530)
                      ++..+..++++    +.+.+|..++-+++.+......+      .+.+.+.+.+.+.    .++.+...+..++.+||++
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            34445555554    35679999999999988754321      1223455555443    3445667788899999987


Q ss_pred             HhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccC--CChHHHHHHHHHHHHH
Q 009632          425 ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLL  502 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i  502 (530)
                      ..    ......+.|++. .-.+....+|..|+.+|..+.....     ..+.+.+.+.+.|  .+.++|.+|+..+-..
T Consensus       474 g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p-----~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t  543 (574)
T smart00638      474 GH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP-----RKVQEVLLPIYLNRAEPPEVRMAAVLVLMET  543 (574)
T ss_pred             CC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc-----hHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            53    222233444443 2223456899999999998876543     3355555665554  4778999998887755

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=96.94  E-value=0.019  Score=60.45  Aligned_cols=147  Identities=18%  Similarity=0.084  Sum_probs=108.1

Q ss_pred             chhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh----hhhhHHHHHHHHh--------cCC-ccchhHHHHhHhhhhc
Q 009632           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD----LVDWYIPLVKRLA--------AGE-WFTARVSACGLFHIAY  153 (530)
Q Consensus        87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~--------~~~-~~~~r~~~~~~l~~l~  153 (530)
                      ++..|....-++.+.+|+.+..++..+.+.-.+..    ++..+..++.-+.        .+. ...+|..+++.++.+.
T Consensus        78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l  157 (1549)
T KOG0392|consen   78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL  157 (1549)
T ss_pred             HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence            44444445557899999999999999988655422    2222222222111        222 2468999999999999


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632          154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (530)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~  231 (530)
                      +...+......++++.+++.-+.|++|..-+..+.........  ......+++...+.+.|.++.||..|+..+..+..
T Consensus       158 ~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s  237 (1549)
T KOG0392|consen  158 KHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPS  237 (1549)
T ss_pred             HhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhH
Confidence            9999888899999999999989999999998888877662222  23455678888899999999999999998887766


Q ss_pred             hc
Q 009632          232 LL  233 (530)
Q Consensus       232 ~~  233 (530)
                      ..
T Consensus       238 ~~  239 (1549)
T KOG0392|consen  238 IQ  239 (1549)
T ss_pred             HH
Confidence            55

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=96.84  E-value=0.053  Score=57.34  Aligned_cols=225  Identities=19%  Similarity=0.138  Sum_probs=130.9

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH------------hcCCC-cHHHHHHHHHHHHHHH
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR------------LLRDN-EAEVRIAAAGKVTKFC  308 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~------------~l~d~-~~~vr~~a~~~l~~~~  308 (530)
                      ++..+...+-++.|.+|..++-++..+.+..++......+=..+..            ...|+ ...||++++++|+.+.
T Consensus        78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l  157 (1549)
T KOG0392|consen   78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL  157 (1549)
T ss_pred             HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence            3344444455677888888777777777766654432221111111            11222 2469999999999999


Q ss_pred             HhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC--HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632          309 RILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (530)
Q Consensus       309 ~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (530)
                      +......+ ...+..+.+++..++|++|.+-+..+........  -..+...+++.+...|.|.+..||..|++.+..+.
T Consensus       158 ~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~  236 (1549)
T KOG0392|consen  158 KHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAP  236 (1549)
T ss_pred             HhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhh
Confidence            88776644 4556777777777899999877666655433111  12345677888889999999999999999887776


Q ss_pred             hhhchh------HHHhhHHHHHHHHh--cCCChHHHHHHHHHHHHH--HhhhChhhHHHHHHHHHHHHhcCCcHHHHHHH
Q 009632          387 QVIGID------LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLL--ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAA  456 (530)
Q Consensus       387 ~~~~~~------~~~~~l~~~l~~~~--~~~~~~~R~~~~~~l~~l--~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a  456 (530)
                      ......      .+...+...+.++.  ..+....|......+...  ............+.|-+...+......||.++
T Consensus       237 s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~  316 (1549)
T KOG0392|consen  237 SIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAA  316 (1549)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence            654111      11112222222221  111122332222222111  11111111122455666666677778899999


Q ss_pred             HHHHHHHHHHh
Q 009632          457 ANNLKRLAEEF  467 (530)
Q Consensus       457 ~~~l~~l~~~~  467 (530)
                      +..+..+.+.-
T Consensus       317 l~~l~~lle~~  327 (1549)
T KOG0392|consen  317 LETLAMLLEAD  327 (1549)
T ss_pred             HHHHHHHHhcC
Confidence            99998887764

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.84  E-value=0.6  Score=46.42  Aligned_cols=260  Identities=11%  Similarity=0.070  Sum_probs=117.0

Q ss_pred             hhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHh--CCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 009632          239 VAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL  315 (530)
Q Consensus       239 ~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  315 (530)
                      ...++..+..++... +...-..+...|..+..+-  +.+. ...++..+-....-  .+....+.+++..+++.-....
T Consensus       174 i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~~  250 (464)
T PF11864_consen  174 ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGHS  250 (464)
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHHH
Confidence            444555555555432 2333345556666555421  1111 12222222222111  2556666777777765332222


Q ss_pred             HHhhhhHhH--hHhccCCcHHHHHHHHHHHHhhccccCHHH------HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh-
Q 009632          316 AIQHILPCV--KELSSDSSQHVRSALASVIMGMAPLLGKDA------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN-  386 (530)
Q Consensus       316 ~~~~l~~~l--~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-  386 (530)
                      ....+...+  ..-...++.++-.+++..+..+.-..|.+.      ....++|.+...++-++..|-..++..+..+. 
T Consensus       251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            223333333  111123456677788888887654442221      12348899999998776666556655555555 


Q ss_pred             hhhchh----HHH--hhHHHHHHHHhcC-CC--------hHHHHHHHHHHHHHHhhhChhh---HHHHHHHHHHHHhcCC
Q 009632          387 QVIGID----LLS--QSLLPAIVELAED-RH--------WRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDK  448 (530)
Q Consensus       387 ~~~~~~----~~~--~~l~~~l~~~~~~-~~--------~~~R~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~  448 (530)
                      +.++..    .+.  -.+++.+...... +.        ..++......+..+-+.+....   -.+.++..+.+....-
T Consensus       331 ~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~l  410 (464)
T PF11864_consen  331 GKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYL  410 (464)
T ss_pred             HhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccC
Confidence            444332    111  1122222222211 11        1233333333333333222211   1345666666655443


Q ss_pred             cHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc-cCCChHHHHHHHHHHHHH
Q 009632          449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLL  502 (530)
Q Consensus       449 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~i  502 (530)
                      .+......+..-...+.-..+.|. +.....+..++ ++.+..+|..|++.+..+
T Consensus       411 p~s~~~~vl~~~~~~~~Ps~~~W~-~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~  464 (464)
T PF11864_consen  411 PDSSALLVLFYEERSCSPSNPDWL-DNLQKLLDRFYNRDRRSEVRIKALDVLEEI  464 (464)
T ss_pred             CHHHHHHHHHHHhcccCCCChHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHhhC
Confidence            333222222110111111133343 22333333344 567889999999887653

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.72  E-value=0.056  Score=44.60  Aligned_cols=71  Identities=14%  Similarity=0.200  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632          396 QSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~-~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  466 (530)
                      .-.+..+...++|++ ...+..+++++..+.+..|.+.  +.++++|.+++.+.......|+....-|+.+...
T Consensus        85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i  158 (160)
T PF11865_consen   85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI  158 (160)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            445556666667664 3444567777777766666544  4466777777777766667777777777666543

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.64  E-value=0.45  Score=42.26  Aligned_cols=192  Identities=16%  Similarity=0.177  Sum_probs=109.7

Q ss_pred             hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH--
Q 009632          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN--  248 (530)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~--  248 (530)
                      +.+.+++++....++.|+.++..-.  ...+.++..+..+...+....+..+...+..+...-+.  ..+.+-+.+..  
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f~~L~~~L~~~~   84 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HFPFLQPLLLLLI   84 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHH
Confidence            5566777777777777777776431  33344555566666666555555555555555543221  11223333322  


Q ss_pred             -------hcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHH--HHHh
Q 009632          249 -------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPE--LAIQ  318 (530)
Q Consensus       249 -------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~  318 (530)
                             .-.+..|....+.+.++..++...+.  .-..+++.+...+ ++.++.++..+++++..+++.--.+  ....
T Consensus        85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~  162 (234)
T PF12530_consen   85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK  162 (234)
T ss_pred             hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence                   11245677777878888888887665  2356888888889 7888889999999999998532211  1112


Q ss_pred             hhhHhHhHhccCCcHHHHHHHHHHHHhhccccC----HHHHHHhHHHHHHHhhcCCC
Q 009632          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEF  371 (530)
Q Consensus       319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~  371 (530)
                      .+.+   ++..+..+.+-...++.+..+...--    .+.+...++..+.+.....+
T Consensus       163 vl~~---~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  163 VLQK---KLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHH---hcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            2222   23345555555555555544433221    12334455555555555444

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.58  E-value=0.92  Score=45.10  Aligned_cols=275  Identities=11%  Similarity=0.019  Sum_probs=151.2

Q ss_pred             HHHHHHHhhcHHHHHHhhChHhhhhccccccccccC--CchHHHHHHHHHHhcccccCCC--ccchhcchhHHHhhhccc
Q 009632           23 IQLRLNSIRRLSTIARALGEERTRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVE   98 (530)
Q Consensus        23 ~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d--~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~   98 (530)
                      -..|..|++.+......+..+.+ .++.-...++.+  ...++|.++.+.|...++.-..  ......++..+..-..++
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i-~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~   82 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSI-EEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD   82 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHH-HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence            46788888888776665543222 223333333222  3457899999988877663221  112333444444444555


Q ss_pred             chHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC---------------------------ccchhHHHHhHhhh
Q 009632           99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE---------------------------WFTARVSACGLFHI  151 (530)
Q Consensus        99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~---------------------------~~~~r~~~~~~l~~  151 (530)
                      +-..|-.|+.+|..=++.+..  +...+.|.+...+..-                           +...-.....++..
T Consensus        83 d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n  160 (464)
T PF11864_consen   83 DFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN  160 (464)
T ss_pred             hHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence            667777777777777766633  2223333333222100                           00000112233333


Q ss_pred             hcC----CCChHHHHHHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhh--hcchhhHHHHHHHHHHhhcCCchhHHHHHHH
Q 009632          152 AYP----SAPDILKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE  224 (530)
Q Consensus       152 l~~----~~~~~~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~  224 (530)
                      +.+    .+.++....++..+..+|..++ ...=+.++..+..+..+  +|.+. ...++..+-...+-.  .....+.+
T Consensus       161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~~--~l~~~~w~  237 (464)
T PF11864_consen  161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNSV--SLCKPSWR  237 (464)
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhccc--ccchhHHH
Confidence            332    3455677778888888775543 33346778888888763  33332 334444444443322  55666777


Q ss_pred             HHHHHhhh-cCchhhhhccHHHHHHhc--C----CCCHHHHHHHHHHHHHHHHHhCCccc----ccc--hHHHHHHhcCC
Q 009632          225 GCAALGKL-LEPQDCVAHILPVIVNFS--Q----DKSWRVRYMVANQLYELCEAVGPEPT----RMD--LVPAYVRLLRD  291 (530)
Q Consensus       225 ~l~~l~~~-~~~~~~~~~~~~~l~~~~--~----d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~--l~~~l~~~l~d  291 (530)
                      ++..+++. .|     ...+..+...+  .    ..+..+-+.+...++.+.-..+.+..    ...  ++|.+...++.
T Consensus       238 ~m~nL~~S~~g-----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~  312 (464)
T PF11864_consen  238 TMRNLLKSHLG-----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS  312 (464)
T ss_pred             HHHHHHcCccH-----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence            77777743 22     22444445544  2    23456667788888877766643321    223  89999999987


Q ss_pred             CcHHHHHHHHHHHHHHH
Q 009632          292 NEAEVRIAAAGKVTKFC  308 (530)
Q Consensus       292 ~~~~vr~~a~~~l~~~~  308 (530)
                      .++.|-...+..+..+.
T Consensus       313 ~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  313 NSPRVDYEILLLINRLL  329 (464)
T ss_pred             CCCeehHHHHHHHHHHH
Confidence            77666666666666665

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=96.56  E-value=1  Score=45.50  Aligned_cols=455  Identities=17%  Similarity=0.200  Sum_probs=232.0

Q ss_pred             chHHHHHHHHHHhcccccCCCcc-chhcchhHHHhhhcccchHHHHHHHHHHHHHHh-hcChhhhhhhHHHH--HHHH--
Q 009632           60 DDEVLLAMAEELGVFIPYVGGVE-HAHVLLPPLETLCTVEETCVRDKAVESLCRIGS-QMRESDLVDWYIPL--VKRL--  133 (530)
Q Consensus        60 ~~~vr~~~~~~l~~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~-~~~~~~~~~~l~~~--l~~l--  133 (530)
                      +|++....-.++|.++.-..-.- .-...+++|-.+++  -..+|.+|+.|+-.++. .+.|.+-...+-.+  ..++  
T Consensus       206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg  283 (980)
T KOG2021|consen  206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG  283 (980)
T ss_pred             CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence            67777766677776655322101 11334555555554  57899999999988765 45553322221111  1111  


Q ss_pred             --hcC--CccchhHHHHhHhhhh-------c----CCCChHH-------HHHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 009632          134 --AAG--EWFTARVSACGLFHIA-------Y----PSAPDIL-------KTELRSIYTQLCQDDMPMVRRSAASNLGKFA  191 (530)
Q Consensus       134 --~~~--~~~~~r~~~~~~l~~l-------~----~~~~~~~-------~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~  191 (530)
                        ..+  ++...-.....++...       .    ...+..+       .-.++|.+++.+.+....+-......+..+.
T Consensus       284 ~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl  363 (980)
T KOG2021|consen  284 YHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYL  363 (980)
T ss_pred             hhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence              122  2333333333333321       1    1222222       2346678888877776666666666666555


Q ss_pred             hhhcch---------hhHHHHHHHHHHhhcCC------c----------hhHHHHHHHHHHHHhhhcCchhhhhccHHHH
Q 009632          192 ATVEPA---------HLKTDIMSIFEDLTQDD------Q----------DSVRLLAVEGCAALGKLLEPQDCVAHILPVI  246 (530)
Q Consensus       192 ~~~~~~---------~~~~~l~~~l~~~~~d~------~----------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  246 (530)
                      ..+.+.         .....+...+.++..|+      +          .++|+.---....++ .+.++-+.+.+-..+
T Consensus       364 ~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~sl  442 (980)
T KOG2021|consen  364 AFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQSL  442 (980)
T ss_pred             HHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence            444331         12233444555554331      1          245654333333333 334444444454444


Q ss_pred             HH---hcCCCCHHHHHHHHHHHHHHHHHhCCccc-------c-----cchHHHHH--HhcCCCcHHHHHHHHHHHHHHHH
Q 009632          247 VN---FSQDKSWRVRYMVANQLYELCEAVGPEPT-------R-----MDLVPAYV--RLLRDNEAEVRIAAAGKVTKFCR  309 (530)
Q Consensus       247 ~~---~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------~-----~~l~~~l~--~~l~d~~~~vr~~a~~~l~~~~~  309 (530)
                      ..   .++..+|..-+.+...+..+++.+.....       .     ..+.+.+.  +.+..+++.|..--++.+.....
T Consensus       443 S~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~k  522 (980)
T KOG2021|consen  443 SAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNK  522 (980)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Confidence            44   34567899889999999999887643321       1     12223222  34567788888888888877666


Q ss_pred             hhCHH-HHHhhhhHhHh--HhccCCcHHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCC------------h
Q 009632          310 ILNPE-LAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEF------------P  372 (530)
Q Consensus       310 ~~~~~-~~~~~l~~~l~--~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~------------~  372 (530)
                      .+..+ ...+.++.++.  ..+.+++.+||..+.-.+.++.+.+.+.  .+.+.++.-+..+|....            .
T Consensus       523 ff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~f  602 (980)
T KOG2021|consen  523 FFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIF  602 (980)
T ss_pred             HHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccc
Confidence            55543 22233333332  1244677888887777777766554331  233444444444442111            1


Q ss_pred             HHHHHHHHhhHHhhhh---------------hchhHHHhhHHHHHHHHhcCCChHHHH----HHHHHHHHHHhhhChhh-
Q 009632          373 DVRLNIISKLDQVNQV---------------IGIDLLSQSLLPAIVELAEDRHWRVRL----AIIEYIPLLASQLGVGF-  432 (530)
Q Consensus       373 ~vr~~a~~~l~~l~~~---------------~~~~~~~~~l~~~l~~~~~~~~~~~R~----~~~~~l~~l~~~~~~~~-  432 (530)
                      +-.....+++|.++..               +.+.-....+.+....+.+|....+..    .++.+++.+++.+...- 
T Consensus       603 ddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlv  682 (980)
T KOG2021|consen  603 DDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLV  682 (980)
T ss_pred             cccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCc
Confidence            1122222222222211               011111122333334445665554443    35556677776553211 


Q ss_pred             ----------H---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHh-hccCCChHHHHHHHHH
Q 009632          433 ----------F---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRA  498 (530)
Q Consensus       433 ----------~---~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-~~~d~~~~vr~~a~~~  498 (530)
                                |   .+.+++.+...  -....+|.+.--.++.+...+|++..  ..+|.+.. +++|.+..--...+-.
T Consensus       683 t~~qvg~~~vf~~~ldvil~~ls~f--~k~E~iRsavrft~hRmI~~lg~~vl--Pfipklie~lL~s~d~kEmvdfl~f  758 (980)
T KOG2021|consen  683 TENQVGNMVVFSNILDVILVTLSFF--NKFENIRSAVRFTFHRMIPILGNKVL--PFIPKLIELLLSSTDLKEMVDFLGF  758 (980)
T ss_pred             chhcccHHHHHHHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHhcchhhh--cchHHHHHHHHhcCCHHHHHHHHHH
Confidence                      1   12233433332  24567888888899999999887643  24555444 4666665544455566


Q ss_pred             HHHHhhhcC--hHHHHhhHHHHHHh
Q 009632          499 ISLLAPVMG--SEITCSRLLPVVIN  521 (530)
Q Consensus       499 l~~i~~~~~--~~~~~~~~~p~l~~  521 (530)
                      +.++.....  --++.++++|.+.-
T Consensus       759 lsQLihkfk~~~~~ilnqmlppll~  783 (980)
T KOG2021|consen  759 LSQLIHKFKTDCYQILNQMLPPLLN  783 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666554433  23457777776553

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=96.54  E-value=1  Score=45.15  Aligned_cols=68  Identities=13%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             hHHHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632          392 DLLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (530)
Q Consensus       392 ~~~~~~l~~~l~~~~~~~----~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~  464 (530)
                      +++.+.++..+.++..|.    ...+|..|+...+.+...   +.  ...-|.+...+-|+.+.+|.-+.++..+|.
T Consensus       686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k---D~--~~~~~y~iR~~~dki~~lR~l~yqa~eqI~  757 (993)
T COG5234         686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK---DS--SGKKLYIIRQTFDKIDSLRGLAYQALEQIR  757 (993)
T ss_pred             HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc---cc--cCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence            456678888888877664    456888888777664321   11  112357788889999999988887766653

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.54  E-value=0.061  Score=45.05  Aligned_cols=127  Identities=15%  Similarity=0.126  Sum_probs=66.7

Q ss_pred             hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHH-HHhHhhhhcCCCChHHHHHHHHH
Q 009632           89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVS-ACGLFHIAYPSAPDILKTELRSI  167 (530)
Q Consensus        89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~-~~~~l~~l~~~~~~~~~~~l~~~  167 (530)
                      +++.-+..|+++.+|.+|+..+..+.....+         .+....+.+....-.. -...++        ....++...
T Consensus        43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~---------~L~~Ae~~~~~~~sFtslS~tLa--------~~i~~lH~~  105 (182)
T PF13251_consen   43 SLLTCILKDPSPKVRAAAASALAALLEGSKP---------FLAQAEESKGPSGSFTSLSSTLA--------SMIMELHRG  105 (182)
T ss_pred             chhHHHHcCCchhHHHHHHHHHHHHHHccHH---------HHHHHHhcCCCCCCcccHHHHHH--------HHHHHHHHH
Confidence            3455567899999999999999988776321         1111111110000000 000000        122334444


Q ss_pred             HHhhcC-CCChhHHHHHHHHHHHHHh-----hhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632          168 YTQLCQ-DDMPMVRRSAASNLGKFAA-----TVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (530)
Q Consensus       168 l~~l~~-d~~~~vR~~a~~~l~~l~~-----~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  233 (530)
                      +...+. +.+..+-...++++..+..     +++ ..+...++..+..++.+.+.+||..++.+++.+...-
T Consensus       106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~-~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  106 LLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP-PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHccCChhhcC-HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            443332 3355555666666666653     333 3445566666666666677777777777777666543

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.53  E-value=0.52  Score=50.01  Aligned_cols=128  Identities=14%  Similarity=0.130  Sum_probs=91.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc---cCH-HHHHHhHHHHHHH
Q 009632          290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL---LGK-DATIEQLLPIFLS  365 (530)
Q Consensus       290 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---~~~-~~~~~~l~~~l~~  365 (530)
                      +|-.|++|..+++.|+..+..++...+...++.++--.+.|.+..||..++.++..+...   .+. +.|...+-.-++.
T Consensus       297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe  376 (1048)
T KOG2011|consen  297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE  376 (1048)
T ss_pred             ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            688899999999999999999988877788899999999999999999999999888765   221 3344455444555


Q ss_pred             hh-cCCChHHHHHHHHhhHHh--hhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 009632          366 LL-KDEFPDVRLNIISKLDQV--NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  422 (530)
Q Consensus       366 ~l-~d~~~~vr~~a~~~l~~l--~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~  422 (530)
                      +. .|.+..||...+...-..  ...+.     ..=+-.+..++-+.+.+++.++...+.
T Consensus       377 Madrd~~~~Vrav~L~~~~~~~~~g~L~-----d~di~~Vy~Li~d~~r~~~~aa~~fl~  431 (1048)
T KOG2011|consen  377 MADRDRNVSVRAVGLVLCLLLSSSGLLS-----DKDILIVYSLIYDSNRRVAVAAGEFLY  431 (1048)
T ss_pred             HHhhhcchhHHHHHHHHHHHHhcccccC-----hhHHHHHHHHHhccCcchHHHHHHHHH
Confidence            54 666777877765544333  12222     222233446667888888888877764

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.49  E-value=0.084  Score=44.22  Aligned_cols=19  Identities=26%  Similarity=0.336  Sum_probs=13.6

Q ss_pred             hHHHHHHHHHHHHHhhhcc
Q 009632          178 MVRRSAASNLGKFAATVEP  196 (530)
Q Consensus       178 ~vR~~a~~~l~~l~~~~~~  196 (530)
                      +||..|+.+|..+++..++
T Consensus         1 kvR~~Al~~L~al~k~~~~   19 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDK   19 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCC
Confidence            3677788888777777544

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.37  E-value=1.1  Score=43.64  Aligned_cols=251  Identities=10%  Similarity=0.078  Sum_probs=140.5

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHh
Q 009632          250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPC  323 (530)
Q Consensus       250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~  323 (530)
                      ..+.+|..-..+.+.|-.+......+.    ....++..++.++..+++.-|......+..+...+...  .+...+...
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            456778877777777777766544332    34467778888888888888888888888776654321  222333333


Q ss_pred             HhHhcc-CCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhcCCChH-HHHHHHHhhHHhhhhhchhHHHhhH
Q 009632          324 VKELSS-DSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQSL  398 (530)
Q Consensus       324 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l  398 (530)
                      +.+... ......-..+++.++.+...+.   ++.....+...++.+.+.+... --......+..++..  ...+...+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k--dp~l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK--DPSLAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--CchhHHHH
Confidence            333333 2333344566677777766543   2444444555555565554322 123333333333321  11122344


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHH--HHHhChhHHh
Q 009632          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWAM  473 (530)
Q Consensus       399 ~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~---~~~~~l~~~l~d~~~~Vr~~a~~~l~~l--~~~~~~~~~~  473 (530)
                      +..+.+.---.+..-....+.-+..+...++++.+..   .++..+-.++..++.+|-+.|+..+..=  ...+...  .
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~--~  334 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQN--S  334 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCT--H
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhC--h
Confidence            4555554444556666778888888888887776654   4556667788999999999999887432  2222111  1


Q ss_pred             hhhHHHHHhhcc-----CCChHHHHHHHHHHHHHhh
Q 009632          474 QHITPQVLEMIN-----NPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       474 ~~i~~~l~~~~~-----d~~~~vr~~a~~~l~~i~~  504 (530)
                      ..++|.+...+.     +=|..||..+..++..+.+
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~  370 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME  370 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            345555555432     2267799999999988876

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=96.28  E-value=0.76  Score=44.87  Aligned_cols=193  Identities=12%  Similarity=0.143  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhhcc---h---hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh
Q 009632          160 LKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  232 (530)
Q Consensus       160 ~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~---~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  232 (530)
                      ..+.+...+...++++ +|.--+...++++.+.+...+   +   .+.+.++|.+...+..+-.+.--.+.+.++.+.+.
T Consensus        68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~  147 (435)
T PF03378_consen   68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL  147 (435)
T ss_dssp             HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566667777777665 688899999999999987553   2   46778999999999887666666677778877777


Q ss_pred             cCchhhhhccHHHHHHhcCCCCHHHH---HHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCCCcHHHHHHHHHHHH
Q 009632          233 LEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVT  305 (530)
Q Consensus       233 ~~~~~~~~~~~~~l~~~~~d~~~~vr---~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (530)
                      .+.....+.....+..++...-|.-|   -+....+..+.+.-+..    ...+.++..+.+++.....+  ..+.+-+.
T Consensus       148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~  225 (435)
T PF03378_consen  148 RPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLE  225 (435)
T ss_dssp             SS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHH
Confidence            65222222333333333343334322   22333344433332222    22456788888888766544  35778888


Q ss_pred             HHHHhhCHHHHHh---hhhHhH-hHhccCCcHHHHHHHHHHHHhhccccCHHH
Q 009632          306 KFCRILNPELAIQ---HILPCV-KELSSDSSQHVRSALASVIMGMAPLLGKDA  354 (530)
Q Consensus       306 ~~~~~~~~~~~~~---~l~~~l-~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  354 (530)
                      .+...++.+.+.+   .++..+ ..+-+.+.++.+...+..++.++...|.+.
T Consensus       226 ~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~  278 (435)
T PF03378_consen  226 SIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF  278 (435)
T ss_dssp             HHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence            8888888764422   222222 223345566666666666666655445443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.28  E-value=1.6  Score=44.54  Aligned_cols=70  Identities=19%  Similarity=0.262  Sum_probs=44.3

Q ss_pred             CCCcCcHHHHHHHhc-ChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccc--cCCchHHHHHHHHHHhcc
Q 009632            5 DEPLYPIAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN--NDDDDEVLLAMAEELGVF   74 (530)
Q Consensus         5 ~~~~~~~~~l~~~l~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~--~d~~~~vr~~~~~~l~~~   74 (530)
                      ++.-+.|..|.+... ++=..-|..|+.+|..+++.+-.+.....+-|++..+  ...+++....+-..+..+
T Consensus        18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il   90 (970)
T KOG0946|consen   18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLIL   90 (970)
T ss_pred             ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            345677888888887 5667779999999999988765444333333444332  224666666555555433

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=96.12  E-value=0.14  Score=48.34  Aligned_cols=132  Identities=19%  Similarity=0.262  Sum_probs=84.0

Q ss_pred             HhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC-------ChHHHHHHHHHHHHHHhh--hChhhHHH
Q 009632          365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDD  435 (530)
Q Consensus       365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~R~~~~~~l~~l~~~--~~~~~~~~  435 (530)
                      ..+.+++...|..|+..|..=       .-...++|.+..++.+.       +...-...+..+..+...  +.-+.+..
T Consensus       185 ~a~~~~~~~~r~~aL~sL~tD-------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh  257 (343)
T cd08050         185 EALVGSNEEKRREALQSLRTD-------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH  257 (343)
T ss_pred             HHHhCCCHHHHHHHHHHhccC-------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH
Confidence            334456677788777666542       22356777777765443       344444444444444432  23444567


Q ss_pred             HHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHHhChhH--HhhhhHHHHHhhccCCChH--HHHHHHHHHHH
Q 009632          436 KLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYL--YRMTILRAISL  501 (530)
Q Consensus       436 ~~~~~l~~~l----------~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~--vr~~a~~~l~~  501 (530)
                      .++|.++.++          .+..+.+|..|+..++.+++.++...  ....+...+.+.+.|++..  .+-+|+..+..
T Consensus       258 ~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~  337 (343)
T cd08050         258 QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA  337 (343)
T ss_pred             HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence            7899888876          45778999999999999999997652  3356666777777776433  46666666665


Q ss_pred             Hh
Q 009632          502 LA  503 (530)
Q Consensus       502 i~  503 (530)
                      +.
T Consensus       338 lG  339 (343)
T cd08050         338 LG  339 (343)
T ss_pred             hC
Confidence            54

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=95.96  E-value=1.3  Score=41.24  Aligned_cols=67  Identities=21%  Similarity=0.265  Sum_probs=40.7

Q ss_pred             hhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhc
Q 009632          141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ  212 (530)
Q Consensus       141 ~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~  212 (530)
                      .+..|.++++...++++ +....-+..-+.+|+|.+..||+.|+..|+.++..    ...+.+.+.+.++++
T Consensus        40 ~k~lasq~ip~~fk~fp-~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn  106 (460)
T KOG2213|consen   40 EKRLASQFIPRFFKHFP-SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN  106 (460)
T ss_pred             HHHHHHHHHHHHHhhCc-hhhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence            34456666666665543 34455566666677777777777777777776654    334555566666555

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=95.87  E-value=0.36  Score=40.21  Aligned_cols=114  Identities=16%  Similarity=0.109  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-hhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH---HHHhCh
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRL---AEEFGP  469 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l---~~~~~~  469 (530)
                      ..++|.+.+-+.+.....|..|.+.+..+...-+ .+.  +..++++.+.+.++.++++|...++++|..+   ....|+
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~  116 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE  116 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence            3566666666666666667777777776666522 221  2355666677777778888888888888777   444454


Q ss_pred             hHHh--hhhHHHHHhhcc-----------CCChHHHHHHHHHHHHHhhhcChH
Q 009632          470 EWAM--QHITPQVLEMIN-----------NPHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       470 ~~~~--~~i~~~l~~~~~-----------d~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      ....  ..++|.+.-+.+           ..+..++....+++..+...-|++
T Consensus       117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d  169 (183)
T PF10274_consen  117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD  169 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence            4322  445555542211           123456666777777776666654

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.62  E-value=3.2  Score=44.44  Aligned_cols=132  Identities=21%  Similarity=0.172  Sum_probs=97.0

Q ss_pred             cCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh----chhHHHhhHHHHHHH
Q 009632          329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVE  404 (530)
Q Consensus       329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~l~~~l~~  404 (530)
                      .|-.+.+|..+++.++.++...+.-++....+.++==.|.|.+..||...+.++..+...-    +-+.+...+-..+++
T Consensus       297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe  376 (1048)
T KOG2011|consen  297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE  376 (1048)
T ss_pred             ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            5888999999999999999988877777777787777789999999999999999998761    123344566666777


Q ss_pred             Hh-cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632          405 LA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (530)
Q Consensus       405 ~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  463 (530)
                      ++ .|-+..||...+..+.....   .......=+-.+..++-|..+.++.+|...+..-
T Consensus       377 Madrd~~~~Vrav~L~~~~~~~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k  433 (1048)
T KOG2011|consen  377 MADRDRNVSVRAVGLVLCLLLSS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK  433 (1048)
T ss_pred             HHhhhcchhHHHHHHHHHHHHhc---ccccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence            76 55577788887776655422   1122222233466778899999999998877543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=1.9  Score=39.86  Aligned_cols=176  Identities=14%  Similarity=0.031  Sum_probs=108.3

Q ss_pred             CCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH---HHhhHHHHHHH
Q 009632          330 DSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVE  404 (530)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~  404 (530)
                      ..+..-|..+..-+..+++.+..  +...-..++.+...+++.+..+|..|+..++.....-...+   +....++.|..
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            34556777777777777766543  22223345556669999999999999999999876543211   12234455544


Q ss_pred             Hh-cCCChHHHHHHHHHHHHHHhhhChhh---HHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhChh--HHhhhh
Q 009632          405 LA-EDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPE--WAMQHI  476 (530)
Q Consensus       405 ~~-~~~~~~~R~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i  476 (530)
                      .+ ++.+-++|..|+.+++.+.....+..   +.-.=...+...+.+  .+...+..++..++.+......+  ......
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~  253 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG  253 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence            44 55567899999999999987654332   221223445566666  55667788888888887654322  111222


Q ss_pred             HHH-HHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          477 TPQ-VLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       477 ~~~-l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      .+. +..+...-+++++..++.++-.....
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            232 23334455777788777777665543

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=95.57  E-value=0.048  Score=39.99  Aligned_cols=71  Identities=24%  Similarity=0.342  Sum_probs=52.1

Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhChh--HHhhhhHHHHHhhccCC--ChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHH
Q 009632          446 QDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVI  520 (530)
Q Consensus       446 ~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~  520 (530)
                      .|+++.+|..|++.++.++..++..  ..+..+...+.+.+.|+  +...+-+|+..+..+    |++.+...++|.+.
T Consensus        16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~   90 (92)
T PF07571_consen   16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK   90 (92)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence            3668899999999999999998754  24567788888888876  445667777776665    55666666777654

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.57  E-value=0.62  Score=42.87  Aligned_cols=131  Identities=14%  Similarity=0.071  Sum_probs=80.2

Q ss_pred             hhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhh-cC
Q 009632          141 ARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLT-QD  213 (530)
Q Consensus       141 ~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~-~d  213 (530)
                      -+..+..-+..+++.+.-.   ..-..+..+...+++++..+|..|+..++....+-++.   ......++.+...+ .|
T Consensus        99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~  178 (342)
T KOG2160|consen   99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD  178 (342)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence            3444555555554443322   11222333444888999999999999999999877662   12222444444444 55


Q ss_pred             CchhHHHHHHHHHHHHhhhcCch--h-hhhccHHHHHHhcCC--CCHHHHHHHHHHHHHHHHH
Q 009632          214 DQDSVRLLAVEGCAALGKLLEPQ--D-CVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEA  271 (530)
Q Consensus       214 ~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~  271 (530)
                      +...+|..|+.++..+.+...+-  . +.-.-...+...+++  .+.+.++-++..++.+...
T Consensus       179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~  241 (342)
T KOG2160|consen  179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE  241 (342)
T ss_pred             CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence            56679999999999999876552  1 122234555666665  5566777777777776654

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=5.1  Score=44.51  Aligned_cols=156  Identities=13%  Similarity=0.117  Sum_probs=99.7

Q ss_pred             HHhhhhHhHhHh-ccCCcHHHHHHHHHHHHhhc--cccC-HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 009632          316 AIQHILPCVKEL-SSDSSQHVRSALASVIMGMA--PLLG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  391 (530)
Q Consensus       316 ~~~~l~~~l~~~-~~d~~~~vr~~~~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  391 (530)
                      ....++..+..+ ..+.+|++|.+++..+....  ..++ .+.-.+.+...+..++.|..-+||+.|+.++.-+.+.--.
T Consensus      1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence            345555566533 44678999999988877643  3333 2334567888899999999999999999999988765321


Q ss_pred             hHHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHhhhChh--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632          392 DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (530)
Q Consensus       392 ~~~~~~l~~~l~~-~~~~~~~~~R~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  468 (530)
                      ....+...+.-.. .....+...+..|+..++.++-.++-.  .+..+.+-.+.....++ ..++..+-+++..+-+...
T Consensus      1603 ~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1603 QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred             ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh
Confidence            1111111111111 123335667778888888887665422  13333444444455565 6789999999998888877


Q ss_pred             hhHH
Q 009632          469 PEWA  472 (530)
Q Consensus       469 ~~~~  472 (530)
                      .+|.
T Consensus      1682 D~W~ 1685 (1710)
T KOG1851|consen 1682 DTWR 1685 (1710)
T ss_pred             hhhh
Confidence            6664

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.51  E-value=0.22  Score=41.14  Aligned_cols=73  Identities=14%  Similarity=0.258  Sum_probs=45.0

Q ss_pred             hhhccHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 009632          238 CVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  310 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  310 (530)
                      +...++..+...++|++ ......+.+++..+.+..|.  -.+.++++|.+++.++...+..|+..++.|+.+...
T Consensus        83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i  158 (160)
T PF11865_consen   83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI  158 (160)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            33445555666666644 23344566666666655442  345677778887777766667777777777766654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF05536 Neurochondrin: Neurochondrin

Probab=95.49  E-value=3.3  Score=41.95  Aligned_cols=153  Identities=14%  Similarity=0.145  Sum_probs=87.5

Q ss_pred             cHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHh-CCcc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH---
Q 009632          242 ILPVIVNFSQDKSW-RVRYMVANQLYELCEAV-GPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---  315 (530)
Q Consensus       242 ~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~-~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---  315 (530)
                      -+|.+.+.+...+. .+-..++++|..++..- |... ....-++.+.+.+.+ .+.....|+..+..+....+.+.   
T Consensus        99 ~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~  177 (543)
T PF05536_consen   99 RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE  177 (543)
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh
Confidence            45555555544333 45555555555555210 1111 112234444444444 34556666666666666555321   


Q ss_pred             ---HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC--------HHHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhH
Q 009632          316 ---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPIFLSLLKDE-FPDVRLNIISKLD  383 (530)
Q Consensus       316 ---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~  383 (530)
                         ....+++.+...........|..+++.++.+....+        ...+...+...+..+++.. .+.-|..++...+
T Consensus       178 ~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa  257 (543)
T PF05536_consen  178 DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAA  257 (543)
T ss_pred             hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence               122344444444444444556666777776654442        2456778888888888765 5778999999999


Q ss_pred             HhhhhhchhHHH
Q 009632          384 QVNQVIGIDLLS  395 (530)
Q Consensus       384 ~l~~~~~~~~~~  395 (530)
                      .+.+.+|.+|+.
T Consensus       258 ~Ll~~~G~~wl~  269 (543)
T PF05536_consen  258 SLLDLLGPEWLF  269 (543)
T ss_pred             HHHHHhChHhhc
Confidence            999999988753

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.47  E-value=3.8  Score=42.55  Aligned_cols=363  Identities=12%  Similarity=0.080  Sum_probs=189.4

Q ss_pred             hhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCC-----hhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcC--
Q 009632          141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDM-----PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--  213 (530)
Q Consensus       141 ~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d--  213 (530)
                      .|......+...+..+++.....+...+-+++.|.+     |..-.+++-.+..++.+++...  ...+|.+.+.+..  
T Consensus       440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik  517 (982)
T KOG2022|consen  440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIK  517 (982)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccc
Confidence            444555555555555565555556666666666555     8888889999999999888743  2335555554422  


Q ss_pred             ---CchhHHHHHHHHHHHHhhhcCchh-hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHH
Q 009632          214 ---DQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVR  287 (530)
Q Consensus       214 ---~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~  287 (530)
                         .++..-..+...++..+..++.+. +.+..+|.+.+.+..+  ..-..+...+..+++....+.  +...++..+..
T Consensus       518 ~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e  595 (982)
T KOG2022|consen  518 LSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYE  595 (982)
T ss_pred             cccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence               256667778889999998887643 4567778777777532  233344445777777655432  23445555555


Q ss_pred             hcCCC--cHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhH----hH---h----ccCCcHHHHHHHH-HHHHhhcccc---
Q 009632          288 LLRDN--EAEVRIAAAGKVTKFCRILNPELAIQHILPCV----KE---L----SSDSSQHVRSALA-SVIMGMAPLL---  350 (530)
Q Consensus       288 ~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l----~~---~----~~d~~~~vr~~~~-~~l~~l~~~~---  350 (530)
                      .+...  .+..|...++++|.+.....++...+.++..+    .+   .    +++..-+.|.... ..++.+...+   
T Consensus       596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~  675 (982)
T KOG2022|consen  596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINK  675 (982)
T ss_pred             HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            55432  36789999999999988877654333332222    11   1    1122222222111 1222222111   


Q ss_pred             -------------------CHHHHHHhHHHHHHHhhc--CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC
Q 009632          351 -------------------GKDATIEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  409 (530)
Q Consensus       351 -------------------~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~  409 (530)
                                         ..-.+..+++|++.+.+.  -++..|-+.++..+..=....++. +.+..+|.+..++-.-
T Consensus       676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r~  754 (982)
T KOG2022|consen  676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVRF  754 (982)
T ss_pred             CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHHh
Confidence                               111234556666665543  233455555555554433333333 3234444444333220


Q ss_pred             ChHHHHHHHHHHHHHHh-hhChhh----HH---HHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHhCh------hH
Q 009632          410 HWRVRLAIIEYIPLLAS-QLGVGF----FD---DKLGALCMQWLQ----DKVYSIRDAAANNLKRLAEEFGP------EW  471 (530)
Q Consensus       410 ~~~~R~~~~~~l~~l~~-~~~~~~----~~---~~~~~~l~~~l~----d~~~~Vr~~a~~~l~~l~~~~~~------~~  471 (530)
                      ....-...+.....+.. ..+.+.    ..   ...+...+.+..    .+.++.-.....++..+.+....      ..
T Consensus       755 ~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~  834 (982)
T KOG2022|consen  755 LTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLA  834 (982)
T ss_pred             ccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHH
Confidence            00000111111111111 011100    00   111111122222    24456667777777777765421      11


Q ss_pred             HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632          472 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       472 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      +...+.++....++.|....-.++.+++..+....+.
T Consensus       835 ~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s  871 (982)
T KOG2022|consen  835 FTSLILICAFILLNSPEPTTIRAASQFLTALATYATS  871 (982)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence            2355677888888888777767788888887765554

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=95.46  E-value=1.4  Score=41.84  Aligned_cols=56  Identities=16%  Similarity=0.067  Sum_probs=35.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632          253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (530)
Q Consensus       253 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  309 (530)
                      .++........+|+.-...++.+ ....++..+...++|..+.+|+.-+.+++....
T Consensus        35 ~nE~aL~~~l~al~~~~~~~~~~-~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~   90 (339)
T PF12074_consen   35 SNEAALSALLSALFKHLFFLSSE-LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW   90 (339)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCcC-CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence            45566666666666555555222 245667777777777777777777777776654

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=95.41  E-value=0.57  Score=39.07  Aligned_cols=115  Identities=17%  Similarity=0.218  Sum_probs=83.0

Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHH---HhhhC
Q 009632          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLL---ASQLG  429 (530)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l---~~~~~  429 (530)
                      ...++|.+..-|.+....-|-.|...+.++...-+.+.+   .+++++.+...++..+..+...++.++..+   ...+|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            567899999999988888888888888888887344433   345666677778899999999999999999   66666


Q ss_pred             hhh--HHHHHHHHHHHHhc-----------CCcHHHHHHHHHHHHHHHHHhChh
Q 009632          430 VGF--FDDKLGALCMQWLQ-----------DKVYSIRDAAANNLKRLAEEFGPE  470 (530)
Q Consensus       430 ~~~--~~~~~~~~l~~~l~-----------d~~~~Vr~~a~~~l~~l~~~~~~~  470 (530)
                      ...  +..+++|.+-.+.+           ....+++...-.+|..+-+..|++
T Consensus       116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d  169 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD  169 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence            543  44566776643222           233567777777777777776655

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.32  E-value=0.14  Score=42.23  Aligned_cols=129  Identities=17%  Similarity=0.242  Sum_probs=80.7

Q ss_pred             ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-----HHHHHHHHHHhh
Q 009632           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQL  171 (530)
Q Consensus        97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-----~~~~l~~~l~~l  171 (530)
                      ...+++|..+.-++.++. ...++...+.+...+.....+........+...+..+.+..++-     ..+.+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            457889999988888886 33334456667777777776665556667777777777765542     234566667766


Q ss_pred             cC--CCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhc-CCchh-HHHHHHHHH
Q 009632          172 CQ--DDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQ-DDQDS-VRLLAVEGC  226 (530)
Q Consensus       172 ~~--d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~-d~~~~-vr~~a~~~l  226 (530)
                      +.  .++..+...+++.+..-+..-.. ....++.++.+.+..+ ++++. +|..|.-.|
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L  154 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL  154 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence            66  66777777777777665432111 3344556677777774 33444 566555444

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=95.19  E-value=3.5  Score=40.50  Aligned_cols=74  Identities=16%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhh---hhHHHHHHHHhc
Q 009632           62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV---DWYIPLVKRLAA  135 (530)
Q Consensus        62 ~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~l~~  135 (530)
                      ..|..++.+||.+..++.........-++|...+++....-|..|...+.+.++........   ..+.+.+...+.
T Consensus       102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~  178 (441)
T PF12054_consen  102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE  178 (441)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence            56888999999998887644433344457888888999999999999999999877643322   245555555544

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=95.16  E-value=1.2  Score=39.07  Aligned_cols=131  Identities=15%  Similarity=0.115  Sum_probs=79.1

Q ss_pred             HHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcC-CCChhHHHHH-HHHHHHHHhhhcchhhHHHH
Q 009632          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSA-ASNLGKFAATVEPAHLKTDI  203 (530)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~l  203 (530)
                      ...+...+.+++..+.|..++.++.......+..    .++.+...+. -.+|.+-... ...++.+....      +..
T Consensus        52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~  121 (213)
T PF08713_consen   52 LYELADELWESGYREERYLALLILDKRRKKLTEE----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEA  121 (213)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGH
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHH
Confidence            3445556666666667777777765544333322    3344444433 3466665555 33344443321      456


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (530)
Q Consensus       204 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  270 (530)
                      .+.+.+.+.+++.-+|..++..+......    ...+.++..+...+.|++..||.+++.+|..++.
T Consensus       122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~  184 (213)
T PF08713_consen  122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK  184 (213)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            77888888888888888777665444433    2345577777777888888888888888877763

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.98  E-value=1.2  Score=36.96  Aligned_cols=124  Identities=15%  Similarity=0.154  Sum_probs=86.4

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH---HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhChh-
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE-  470 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~---~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~-  470 (530)
                      +.+...+..++++++...|-.++..+..+++..+.+.+.   ...+..+++.++. ....+++.++.++..++...++. 
T Consensus        24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            566777888889999999999999999999888777764   3456666666665 34578999999999999876432 


Q ss_pred             -HHh-------hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHh
Q 009632          471 -WAM-------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVIN  521 (530)
Q Consensus       471 -~~~-------~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~  521 (530)
                       ...       ..+++.+.++.++  ......++.++..++...+.  ..+.+++-..+..
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~  162 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLS  162 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence             111       3345555555555  56677899999999887664  2344555444443

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=94.94  E-value=1.3  Score=42.01  Aligned_cols=55  Identities=16%  Similarity=0.031  Sum_probs=33.9

Q ss_pred             ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 009632          138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA  192 (530)
Q Consensus       138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~  192 (530)
                      ++.........++.-...++.+.-+.+...+.+.+.|+.+.+|+.-+..++....
T Consensus        36 nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~   90 (339)
T PF12074_consen   36 NEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW   90 (339)
T ss_pred             CHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence            3334444444444433333334446667777777888877788888888888765

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.86  E-value=4.2  Score=39.67  Aligned_cols=251  Identities=10%  Similarity=0.014  Sum_probs=123.5

Q ss_pred             cCCCChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHH
Q 009632          172 CQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPV  245 (530)
Q Consensus       172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~  245 (530)
                      ..|++|.--..+.+.+..+....+...    +...++-.+..++..+++.-|......+..+-..+..  ..+...+...
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            446788877777888888777655433    5567888888899999998999888888876655433  1112222233


Q ss_pred             HHHhcC-CCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHhhh
Q 009632          246 IVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQHI  320 (530)
Q Consensus       246 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l  320 (530)
                      +.+... .....--..+.+.++.+..++....   ...-+...++.+.+.+. ........+++..+...-+.  +...+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~--l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS--LAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG--GHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHH
Confidence            333322 2233334455556666665543211   11223333444444443 23344455555555542111  11222


Q ss_pred             hHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHH---HhHHHHHHHhhcCCChHHHHHHHHhhHHh--hhhhchhHHH
Q 009632          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI---EQLLPIFLSLLKDEFPDVRLNIISKLDQV--NQVIGIDLLS  395 (530)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~~  395 (530)
                      +..+...---.+..-....+.-+..+...++++.+.   ..+...+..+++.+...|-+.|+..+.+-  ...+..  ..
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~  334 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS  334 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence            222222211223333344555566666666655443   34555566677788888888887766542  222211  12


Q ss_pred             hhHHHHHHHHhcC---CCh--HHHHHHHHHHHHHHh
Q 009632          396 QSLLPAIVELAED---RHW--RVRLAIIEYIPLLAS  426 (530)
Q Consensus       396 ~~l~~~l~~~~~~---~~~--~~R~~~~~~l~~l~~  426 (530)
                      +.++|.+...+..   .+|  .+|..+..++..+.+
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~  370 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME  370 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3455555444322   233  477777666666544

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.86  E-value=0.4  Score=45.31  Aligned_cols=138  Identities=14%  Similarity=0.187  Sum_probs=78.0

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC-------chhHHHHHHHHHHHHhhh--cC
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-------QDSVRLLAVEGCAALGKL--LE  234 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-------~~~vr~~a~~~l~~l~~~--~~  234 (530)
                      .+..+.+.+.+.+...|..|+..|..       +.-...++|+|.+++.+.       +-..-...++...++...  +.
T Consensus       179 yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~  251 (343)
T cd08050         179 YFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH  251 (343)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence            33344444545677777777666533       233466788888777654       122222223333333321  12


Q ss_pred             chhhhhccHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCc-H-HHHHHH
Q 009632          235 PQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE-A-EVRIAA  300 (530)
Q Consensus       235 ~~~~~~~~~~~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~-~-~vr~~a  300 (530)
                      -+.+...++|.+...+          .+.+|..|..++..++.++..++...  ....+...+.+.+.|+. + .....|
T Consensus       252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGA  331 (343)
T cd08050         252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGA  331 (343)
T ss_pred             hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHH
Confidence            2456667777776543          24678999999999999998887653  12345545555555543 2 235666


Q ss_pred             HHHHHHHH
Q 009632          301 AGKVTKFC  308 (530)
Q Consensus       301 ~~~l~~~~  308 (530)
                      +..|..++
T Consensus       332 i~GL~~lG  339 (343)
T cd08050         332 IVGLSALG  339 (343)
T ss_pred             HHHHHHhC
Confidence            66665553

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=94.84  E-value=5  Score=40.42  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=59.0

Q ss_pred             HHHHHHHhhhChhhHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHh----hccCCChHHHH
Q 009632          419 EYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE----MINNPHYLYRM  493 (530)
Q Consensus       419 ~~l~~l~~~~~~~~~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~----~~~d~~~~vr~  493 (530)
                      ..++.+.+.+.++.+.+ ++-.+..++ ..+...+|.+++..++.+.+..-++..++.+.|.+..    ++.|++|-+++
T Consensus       463 ~l~~~~~~~l~~~~i~q-v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q  541 (559)
T PF14868_consen  463 SLLSFFIQLLDPQLIEQ-VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQ  541 (559)
T ss_pred             HHHHHHHHhcChHHHHH-HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHH
Confidence            33344444444544433 333334444 4555569999999998888776555555666676655    46899999999


Q ss_pred             HHHHHHHHHhhhcC
Q 009632          494 TILRAISLLAPVMG  507 (530)
Q Consensus       494 ~a~~~l~~i~~~~~  507 (530)
                      .|+++++.+++.-.
T Consensus       542 ~ALeAF~~FAe~T~  555 (559)
T PF14868_consen  542 HALEAFGQFAERTS  555 (559)
T ss_pred             HHHHHHHHHhccCC
Confidence            99999999987544

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.82  E-value=2  Score=42.02  Aligned_cols=128  Identities=16%  Similarity=0.229  Sum_probs=77.7

Q ss_pred             CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHHHhh--hChhhHHHHHH
Q 009632          369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQ--LGVGFFDDKLG  438 (530)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~R~~~~~~l~~l~~~--~~~~~~~~~~~  438 (530)
                      ..++..|..|+..|..       +.-...++|.+..++.+.        +-+.-...++.+..+.+.  +--+.+...++
T Consensus       218 g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~  290 (576)
T KOG2549|consen  218 GSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLV  290 (576)
T ss_pred             cCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence            3667788888777654       222356777777766543        122222223333333221  11233456678


Q ss_pred             HHHHHHh----------cCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCC--ChHHHHHHHHHHHHHh
Q 009632          439 ALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISLLA  503 (530)
Q Consensus       439 ~~l~~~l----------~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~  503 (530)
                      |.++.++          .|++|.+|.-|+..+..++..++....  ...+...+.+.+.|+  .+..+-+++..+..+.
T Consensus       291 PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg  369 (576)
T KOG2549|consen  291 PSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG  369 (576)
T ss_pred             hHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence            8777764          478899999999999999999875532  356777777777775  4455556666665554

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.74  E-value=3.9  Score=49.18  Aligned_cols=153  Identities=12%  Similarity=0.065  Sum_probs=92.7

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh----cc------hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATV----EP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~----~~------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~  231 (530)
                      ..+++.+...+...+..++.....++..+....    +.      -....++++.+.+++.|+.+.-|..++-.+..+..
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            346677777788888899999888888776532    21      23346788888888888888888877777777766


Q ss_pred             hcCchh---hhhccHHHHHHhcCCCCHH--------HHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCcHHH
Q 009632          232 LLEPQD---CVAHILPVIVNFSQDKSWR--------VRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEV  296 (530)
Q Consensus       232 ~~~~~~---~~~~~~~~l~~~~~d~~~~--------vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~v  296 (530)
                      ..+...   +...++..+...+.|...+        ++......+.......+.+.    ....++..+...+.++++.|
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            665321   1222333333333332211        22222222222221111111    12345566666777888899


Q ss_pred             HHHHHHHHHHHHHhhCHH
Q 009632          297 RIAAAGKVTKFCRILNPE  314 (530)
Q Consensus       297 r~~a~~~l~~~~~~~~~~  314 (530)
                      |+.+.+.|..+++..|..
T Consensus      1143 R~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS 1160 (3550)
T ss_pred             HHHHHHHHHHHHHHcCCc
Confidence            999999999999887654

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.69  E-value=0.91  Score=42.53  Aligned_cols=114  Identities=19%  Similarity=0.124  Sum_probs=87.8

Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh---HH
Q 009632          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD  434 (530)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---~~  434 (530)
                      +.-++..++..+..||..|+..+..+.......  ...-.+++.+..+..|.+..+|....+.+..+.....++.   +.
T Consensus        60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~  139 (393)
T KOG2149|consen   60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV  139 (393)
T ss_pred             HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence            344566677888899999998888887662221  1124567777778889999999999999988766655443   45


Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh
Q 009632          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM  473 (530)
Q Consensus       435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~  473 (530)
                      ..++|++...++.-.++||.-+...+..+...+++.+..
T Consensus       140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~  178 (393)
T KOG2149|consen  140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR  178 (393)
T ss_pred             HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence            678899999999999999999999999999999877654

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=94.68  E-value=1.9  Score=37.79  Aligned_cols=134  Identities=16%  Similarity=0.181  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC-CCHHHHHHHH-HHHHHHHHHhCCcccc
Q 009632          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVA-NQLYELCEAVGPEPTR  278 (530)
Q Consensus       201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~-~~l~~l~~~~~~~~~~  278 (530)
                      +........+..++..+.|..|+..+.......+.+     .++.+...+.+ ++|.+-..+| ..++.+....      
T Consensus        50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~-----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------  118 (213)
T PF08713_consen   50 EELYELADELWESGYREERYLALLILDKRRKKLTEE-----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------  118 (213)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH-----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH-----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence            344556666777777777777777776544333221     44555555554 5676666653 3344443221      


Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (530)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  349 (530)
                      +.+.+.+.+-++++++-+|..++..+......    ...+.++..+...+.|++..||.++...+..++..
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            44566677777777777777776655444333    11245555666666777777777777777766543

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=94.67  E-value=1.2  Score=44.52  Aligned_cols=219  Identities=16%  Similarity=0.176  Sum_probs=116.1

Q ss_pred             CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcch
Q 009632            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (530)
Q Consensus         9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~   88 (530)
                      .+++.|.+++.+++...|..|+-+|+-.-..-..+.....|.|.+.+. +...+|...++..||-+.-.-.+.+....++
T Consensus       452 palALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d~-~~~~ev~~~aslsLG~IfvGscn~dvts~il  530 (878)
T KOG2005|consen  452 PALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFDT-KSPMEVVAFASLSLGMIFVGSCNEDVTSSIL  530 (878)
T ss_pred             HHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcCC-CCchhHHHHHHhhcceeEEecCChHHHHHHH
Confidence            357788899999999999999999986433222344444555655432 2235788888888885533212244455555


Q ss_pred             hHHHhhh--cccchHHHHHHHHHHHHHH--hh------------cChhhhhh---hHH----------------HHHHHH
Q 009632           89 PPLETLC--TVEETCVRDKAVESLCRIG--SQ------------MRESDLVD---WYI----------------PLVKRL  133 (530)
Q Consensus        89 ~~l~~l~--~d~~~~vR~~a~~~l~~l~--~~------------~~~~~~~~---~l~----------------~~l~~l  133 (530)
                      ..|.+-.  ..++.-.|..++ +|+.+.  +.            ++. .+..   .++                ..+..+
T Consensus       531 qtlmekse~El~d~~~RFL~L-GL~llflgkqe~~d~~~e~~~~i~~-~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~  608 (878)
T KOG2005|consen  531 QTLMEKSETELEDQWFRFLAL-GLALLFLGKQESVDAVVETIKAIEG-PIRKHESILVKSCAYAGTGNVLKIQSQLLLSF  608 (878)
T ss_pred             HHHHHhhhhhhhchHHHHHHH-HHHHHHhcccchHHHHHHHHHHhhh-HHHHHHHHHHHHhhccccCceEEechhhhhhh
Confidence            5444322  223455555543 122111  11            000 0000   000                111122


Q ss_pred             hcCCccc-hhHHHHhHhhhhcCCCChHH-HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh
Q 009632          134 AAGEWFT-ARVSACGLFHIAYPSAPDIL-KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT  211 (530)
Q Consensus       134 ~~~~~~~-~r~~~~~~l~~l~~~~~~~~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~  211 (530)
                      +.+.... -...-...++...-.++++. .+-.+..+-.++.=.++.+|++.-.+++-+.-.-|+    -.+++.+.++.
T Consensus       609 cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq----~~vlDtLsk~s  684 (878)
T KOG2005|consen  609 CGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFS  684 (878)
T ss_pred             cCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhc
Confidence            2211100 00000111121112233332 233444555666666788899888888877654433    24677888888


Q ss_pred             cCCchhHHHHHHHHHHHHhhhcC
Q 009632          212 QDDQDSVRLLAVEGCAALGKLLE  234 (530)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~  234 (530)
                      .|.+.+|-..++-+++-++....
T Consensus       685 hd~D~eva~naIfamGLiGAGTn  707 (878)
T KOG2005|consen  685 HDGDLEVAMNAIFAMGLIGAGTN  707 (878)
T ss_pred             cCcchHHHHHHHHHhccccCCcc
Confidence            89888888888888887765544

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.66  E-value=14  Score=44.90  Aligned_cols=152  Identities=13%  Similarity=0.075  Sum_probs=100.3

Q ss_pred             hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----------hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (530)
Q Consensus        85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----------~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~  154 (530)
                      ..+++.|..-+..++..++..+..++..+.....-          -.+-.++.+.+.+++.++.|..|..++..+..+..
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            44566677777788999999999999888664321          11345578888888999999999999998888888


Q ss_pred             CCChH----HHHHHHHHHHhhcCCCChhH--------HHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhcCCchhH
Q 009632          155 SAPDI----LKTELRSIYTQLCQDDMPMV--------RRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSV  218 (530)
Q Consensus       155 ~~~~~----~~~~l~~~l~~l~~d~~~~v--------R~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~v  218 (530)
                      .++..    ...+++..+...+.|...++        +......+..+......    ......++..+..-+.+++..|
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            87743    33445555555454443222        22222222222221111    1233446666777788888999


Q ss_pred             HHHHHHHHHHHhhhcCch
Q 009632          219 RLLAVEGCAALGKLLEPQ  236 (530)
Q Consensus       219 r~~a~~~l~~l~~~~~~~  236 (530)
                      |+.+.+.|..+++..+.+
T Consensus      1143 R~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS 1160 (3550)
T ss_pred             HHHHHHHHHHHHHHcCCc
Confidence            999999999999887653

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.63  E-value=5  Score=39.48  Aligned_cols=177  Identities=14%  Similarity=0.171  Sum_probs=109.6

Q ss_pred             HhHhccCCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhc-------------------CCChHHHHHHHHh
Q 009632          324 VKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLK-------------------DEFPDVRLNIISK  381 (530)
Q Consensus       324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~-------------------d~~~~vr~~a~~~  381 (530)
                      +.-.....++++-......+..+.+..-   .+.....+-|++.++++                   ++...-|..+.+.
T Consensus       296 lLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dv  375 (559)
T KOG2081|consen  296 LLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDV  375 (559)
T ss_pred             HHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHH
Confidence            3344566777777666666666554332   12222333344443331                   1124679999999


Q ss_pred             hHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc--CCcHHHHHHHHHH
Q 009632          382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANN  459 (530)
Q Consensus       382 l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~--d~~~~Vr~~a~~~  459 (530)
                      +..+...+|.+...+...-.+.+  .+++|+.-++++..+..+++.+.+.  .+.++|-+++++-  +....+|..++..
T Consensus       376 l~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll  451 (559)
T KOG2081|consen  376 LKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILL  451 (559)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHH
Confidence            99999999987654444444433  4678999999999999999988765  3456666666543  2334499999999


Q ss_pred             HHHHHHHhChhHHh-hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632          460 LKRLAEEFGPEWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (530)
Q Consensus       460 l~~l~~~~~~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~  506 (530)
                      +|.+.+.+...... +-+...+...+.+..  ....+..++..++..+
T Consensus       452 ~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c  497 (559)
T KOG2081|consen  452 LGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC  497 (559)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence            99998877543221 333334444444444  5556666666665543

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=94.59  E-value=5  Score=39.33  Aligned_cols=217  Identities=12%  Similarity=0.162  Sum_probs=112.2

Q ss_pred             chhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCc------ccccchHHHH
Q 009632          215 QDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE------PTRMDLVPAY  285 (530)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l  285 (530)
                      |+.+-+...+.+..+.+.+.+  ....+++...+...+++ ++++.-....++++.+.+.....      ...+.++|.+
T Consensus        43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f  122 (435)
T PF03378_consen   43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF  122 (435)
T ss_dssp             -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence            333444444444443333322  12334445555555555 45777777888888877765432      1245688888


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHH---HHHHHHHHhhccccC----HHHHHHh
Q 009632          286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVR---SALASVIMGMAPLLG----KDATIEQ  358 (530)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr---~~~~~~l~~l~~~~~----~~~~~~~  358 (530)
                      ...+..+..+.---+.+-++.+.+........+.+...+..++...-|.-+   -++.+.+..+.+.-+    .......
T Consensus       123 ~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~  202 (435)
T PF03378_consen  123 QEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEP  202 (435)
T ss_dssp             HHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHH
Confidence            888876655555566777777776654222223333333333444444322   222233333222111    1233456


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHH---hhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChhhH
Q 009632          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFF  433 (530)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~  433 (530)
                      ++.++..++..+..+  ..+...+..+...+..+.+.   +.++..+...+ +++....+...+.+++.++...|++.+
T Consensus       203 iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l  279 (435)
T PF03378_consen  203 ILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL  279 (435)
T ss_dssp             HHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence            777788888766533  45777888888777765432   34444444333 456677778888888887777776654

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.54  E-value=7  Score=40.76  Aligned_cols=344  Identities=13%  Similarity=0.082  Sum_probs=172.8

Q ss_pred             hhhhHHHHHHHHhcCCc-----cchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHHH
Q 009632          122 LVDWYIPLVKRLAAGEW-----FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-----DDMPMVRRSAASNLGKFA  191 (530)
Q Consensus       122 ~~~~l~~~l~~l~~~~~-----~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~-----d~~~~vR~~a~~~l~~l~  191 (530)
                      +...+...+.++..+.+     +..-.+++-.+...+..++...... +|.+.+.+.     -.++..-..+...++.++
T Consensus       459 ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~-i~rl~~~~asik~S~~n~ql~~Tss~~igs~s  537 (982)
T KOG2022|consen  459 LLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTW-IPRLFETSASIKLSAPNPQLLSTSSDLIGSLS  537 (982)
T ss_pred             HHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHH-HHHHHHhccccccccCChhHHHHHHHHHHHHH
Confidence            34445555666654432     3334456667777888877654443 333333322     236777888889999999


Q ss_pred             hhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCC--CCHHHHHHHHHHHH
Q 009632          192 ATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQD--KSWRVRYMVANQLY  266 (530)
Q Consensus       192 ~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~  266 (530)
                      ..+++ +......+|.+.+.+..++  .-..++.++..+++.+..+  .+...++..+.+.+..  -....|..+..++|
T Consensus       538 ~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIG  615 (982)
T KOG2022|consen  538 NWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIG  615 (982)
T ss_pred             HHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence            88877 4456677888888886443  3334555577777766542  2334444444444443  23458888999999


Q ss_pred             HHHHHhCCccccc---chHHHHHHhc--------CCCcHHHHHHH-HHHHHHHHHhhC----------------------
Q 009632          267 ELCEAVGPEPTRM---DLVPAYVRLL--------RDNEAEVRIAA-AGKVTKFCRILN----------------------  312 (530)
Q Consensus       267 ~l~~~~~~~~~~~---~l~~~l~~~l--------~d~~~~vr~~a-~~~l~~~~~~~~----------------------  312 (530)
                      .+.+...++....   .++..+.+-+        .+++...|.+. +.++..+...+.                      
T Consensus       616 yvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~  695 (982)
T KOG2022|consen  616 YVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFP  695 (982)
T ss_pred             HHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCC
Confidence            9988776443222   2333332222        12222222221 122333333221                      


Q ss_pred             HHHHHhhhhHhHhHhcc--CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh-hhh
Q 009632          313 PELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN-QVI  389 (530)
Q Consensus       313 ~~~~~~~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~  389 (530)
                      .-.+...++|.+.+...  -.+..+-.+++.....-....+.. |...++|-+...+..-.......++....... ..+
T Consensus       696 il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~  774 (982)
T KOG2022|consen  696 ILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKS  774 (982)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhh
Confidence            11234556666655433  122234444443333222233322 43333333333321100111111111111111 111


Q ss_pred             chhHH----H---hhHHHHHHHHhc----CCChHHHHHHHHHHHHHHhhhC------hhhHHHHHHHHHHHHhcCCcHHH
Q 009632          390 GIDLL----S---QSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSI  452 (530)
Q Consensus       390 ~~~~~----~---~~l~~~l~~~~~----~~~~~~R~~~~~~l~~l~~~~~------~~~~~~~~~~~l~~~l~d~~~~V  452 (530)
                      +.+..    .   ...+..-..+..    ..+..+-...+.++..+.+...      ...|...+++....++..+++--
T Consensus       775 ~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~  854 (982)
T KOG2022|consen  775 TVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTT  854 (982)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHH
Confidence            11110    0   111111111112    2245566677777777766543      23355668888999999999888


Q ss_pred             HHHHHHHHHHHHHHhCh
Q 009632          453 RDAAANNLKRLAEEFGP  469 (530)
Q Consensus       453 r~~a~~~l~~l~~~~~~  469 (530)
                      -.++++.+..+....++
T Consensus       855 i~aa~qF~t~~~~~~~s  871 (982)
T KOG2022|consen  855 IRAASQFLTALATYATS  871 (982)
T ss_pred             HHHHHHHHHHHHhhccc
Confidence            88888888887766554

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.51  E-value=4.2  Score=38.14  Aligned_cols=188  Identities=14%  Similarity=0.073  Sum_probs=111.1

Q ss_pred             ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-----HHH----hhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-----LAI----QHILPCVKELSSDSSQHVRSALASVIMGMA  347 (530)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~-----~~~----~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~  347 (530)
                      ...+++.++..+..-+.+.|+.+...+..+...- +..     .+.    +.++..+...-++++--.-  +...+-..+
T Consensus        74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~  151 (335)
T PF08569_consen   74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECI  151 (335)
T ss_dssp             HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHT
T ss_pred             HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHH
Confidence            4567888888888888899998888888776642 211     111    2334444433333332111  111111111


Q ss_pred             ccc--CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh---chhHH---HhhHHHHHHHHhcCCChHHHHHHHH
Q 009632          348 PLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLL---SQSLLPAIVELAEDRHWRVRLAIIE  419 (530)
Q Consensus       348 ~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~  419 (530)
                      ..-  ..-......+--+....+.++.+|-..|..++..+....   ..+.+   .+.++.....++.++||=+|..++.
T Consensus       152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk  231 (335)
T PF08569_consen  152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK  231 (335)
T ss_dssp             TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred             hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence            100  000011112223556778888999999988888876432   22222   2456667788899999999999999


Q ss_pred             HHHHHHhhhChhhH------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          420 YIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       420 ~l~~l~~~~~~~~~------~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                      .++.+.---..-.+      ...-+..++.++.|+..++|..|..++..++..-
T Consensus       232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            99988642211111      2446788999999999999999999999888764

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.49  E-value=0.46  Score=46.14  Aligned_cols=139  Identities=14%  Similarity=0.231  Sum_probs=84.7

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHhhh---cCc----
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKL---LEP----  235 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~---~~~----  235 (530)
                      ....+.+.|.+.++..|+.|++.|..       +.-...++|+|..++.+.-. .|-..-++.|.++.+.   +-.    
T Consensus       208 Yy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i  280 (576)
T KOG2549|consen  208 YYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI  280 (576)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence            44445555566888899999888754       22246788888888876521 2222223333333322   111    


Q ss_pred             --hhhhhccHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCC--cHHHHHH
Q 009632          236 --QDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDN--EAEVRIA  299 (530)
Q Consensus       236 --~~~~~~~~~~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~  299 (530)
                        +.|...++|.+...+          .|.+|.+|..++..+..++..++...  ....+...+.+.+.|+  .+.....
T Consensus       281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG  360 (576)
T KOG2549|consen  281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG  360 (576)
T ss_pred             chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence              446666777776532          35678888888888888887776543  1334566666666665  3556677


Q ss_pred             HHHHHHHHHH
Q 009632          300 AAGKVTKFCR  309 (530)
Q Consensus       300 a~~~l~~~~~  309 (530)
                      ++..|..+..
T Consensus       361 ai~gL~~lg~  370 (576)
T KOG2549|consen  361 AIAGLSELGH  370 (576)
T ss_pred             HHHHHHHhhh
Confidence            7777766654

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=94.45  E-value=3.2  Score=38.13  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=31.9

Q ss_pred             HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 009632          353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (530)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  392 (530)
                      +....-++|.++.++.|.+..+|...+..+..+.......
T Consensus       114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~  153 (282)
T PF10521_consen  114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA  153 (282)
T ss_pred             HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh
Confidence            3445678899999999999999999999998888765543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.34  E-value=1.5  Score=36.45  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=66.9

Q ss_pred             HHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcch-h-
Q 009632          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPA-H-  198 (530)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~-~-  198 (530)
                      +...+..+.+++++..|..++.++.......+.+    .....+..+...++. ..+.+++.++.++..+.....+. . 
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l  105 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL  105 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence            4445566667777777777777777777666544    223444555555544 45668899999999988776541 1 


Q ss_pred             -------hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC
Q 009632          199 -------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE  234 (530)
Q Consensus       199 -------~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~  234 (530)
                             ..+.+++.+.+++++  ..+...++.++..+....+
T Consensus       106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence                   123455555566665  4566667777777666544

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.33  E-value=7.3  Score=40.12  Aligned_cols=157  Identities=20%  Similarity=0.162  Sum_probs=99.1

Q ss_pred             ChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhh--ChhhHHH---HHHHHHHHH
Q 009632          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL--GVGFFDD---KLGALCMQW  444 (530)
Q Consensus       371 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~--~~~~~~~---~~~~~l~~~  444 (530)
                      ..-+|...+-.++.-...--.......+-..+.+++.|. +--+|.+++.++..+..-.  .++.|.+   .+.-.+.++
T Consensus       500 ~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkl  579 (978)
T KOG1993|consen  500 SRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKL  579 (978)
T ss_pred             hhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHH
Confidence            345677777777666554333344455566677888887 6779999999998887643  2333332   223333333


Q ss_pred             hcC-CcHHHHHHHHHHHHHHHHHhChhHH--h---hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHH
Q 009632          445 LQD-KVYSIRDAAANNLKRLAEEFGPEWA--M---QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLL  516 (530)
Q Consensus       445 l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~--~---~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~  516 (530)
                      +.. ..-+-|...+..++.+....++...  .   -.++|.+-+-. .+..-.|.+.+.++.+++..+|.  ..+.+.++
T Consensus       580 l~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~  658 (978)
T KOG1993|consen  580 LKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNLVNALGAQSFEFYPFLY  658 (978)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHHHHHhccCCccchHHHH
Confidence            331 2334678888888888887765421  1   22344443322 35667899999999999999885  45677888


Q ss_pred             HHHHhhccCCCC
Q 009632          517 PVVINASKDRYL  528 (530)
Q Consensus       517 p~l~~~l~D~~~  528 (530)
                      |.+....+-..|
T Consensus       659 pVIel~~D~~sP  670 (978)
T KOG1993|consen  659 PVIELSTDPSSP  670 (978)
T ss_pred             HHHHHhcCCCCC
Confidence            877766555544

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=94.32  E-value=1.4  Score=40.45  Aligned_cols=131  Identities=15%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh---HH-----HHHHHHHHHHhc--------CCcHHHHHHHHHH
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD-----DKLGALCMQWLQ--------DKVYSIRDAAANN  459 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---~~-----~~~~~~l~~~l~--------d~~~~Vr~~a~~~  459 (530)
                      ..++|.+..++.|.+..+|..++.++..+...+....   +.     +.+.+.+..++.        +....+=..|..+
T Consensus       118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            5789999999999999999999999999998776555   32     334555555555        6777888899999


Q ss_pred             HHHHHHHhCh---h----HHhhhhHHHHHhhcc-C---CChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCC
Q 009632          460 LKRLAEEFGP---E----WAMQHITPQVLEMIN-N---PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDR  526 (530)
Q Consensus       460 l~~l~~~~~~---~----~~~~~i~~~l~~~~~-d---~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~  526 (530)
                      +-.++.....   .    ...+.+...+...+. -   +..+++...++.+..++..+|-.  .....++|.+.+.+.||
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            9888765311   1    111222222333222 2   35889999999999999998854  45888999999988886

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.16  E-value=4.7  Score=37.26  Aligned_cols=178  Identities=18%  Similarity=0.118  Sum_probs=119.8

Q ss_pred             hHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHhh---hhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHH
Q 009632          281 LVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQH---ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI  356 (530)
Q Consensus       281 l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~---l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  356 (530)
                      +-..+-++++-.= .-|...|++....+.+.+|++.+.+.   ..|-+..+....+-.||...+..+....-.+|. ...
T Consensus        55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~  133 (307)
T PF04118_consen   55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR  133 (307)
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence            3334444444332 46999999999999999998754332   234444455666778999999998887666776 433


Q ss_pred             H---hHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC----
Q 009632          357 E---QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----  429 (530)
Q Consensus       357 ~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~----  429 (530)
                      .   .++..++..+.|+..++-..+...+..+...+|.+.+-+.+.-.+.     .++..|..|+.++..-.....    
T Consensus       134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~  208 (307)
T PF04118_consen  134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL  208 (307)
T ss_pred             HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence            3   3444445556789999999999999999999987754444443332     457799999988865544333    


Q ss_pred             --hh-h---H----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632          430 --VG-F---F----DDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (530)
Q Consensus       430 --~~-~---~----~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~  464 (530)
                        .. .   +    ..-++..+...+.|++.=|+..++..+-...
T Consensus       209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~  253 (307)
T PF04118_consen  209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHF  253 (307)
T ss_pred             ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence              00 0   0    1336777888888888888888887765443

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.96  E-value=7.6  Score=42.67  Aligned_cols=213  Identities=11%  Similarity=0.123  Sum_probs=119.7

Q ss_pred             hcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcC---CCChhHHHHHHHHHHHHHhhhcc---hhhHHHHH
Q 009632          134 AAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ---DDMPMVRRSAASNLGKFAATVEP---AHLKTDIM  204 (530)
Q Consensus       134 ~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~---d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~  204 (530)
                      ...+..++|.....++-.+....++.   -+..+.+.+-....   .....+-+.+..++.-+...+-+   ......++
T Consensus       851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li  930 (1610)
T KOG1848|consen  851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI  930 (1610)
T ss_pred             hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence            34455667777777777776666653   24445554444332   22445555566666665554332   22233445


Q ss_pred             HHHHHhhc-CCchhHHHHHHHHHHHHhhhcCc-----------------------------hhhhhccHHHHHHhcCCCC
Q 009632          205 SIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP-----------------------------QDCVAHILPVIVNFSQDKS  254 (530)
Q Consensus       205 ~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~~~~~l~~~~~d~~  254 (530)
                      +.+..+.. ..+-.|-..|+..+-.++..+..                             +..+=.++..+.+++.|+.
T Consensus       931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr 1010 (1610)
T KOG1848|consen  931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSR 1010 (1610)
T ss_pred             HHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccch
Confidence            54444432 22334555566555555544321                             1223346777788899999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhcC-------CC--cHHHH----HHHHHHHHHHHHhhCHH---
Q 009632          255 WRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLR-------DN--EAEVR----IAAAGKVTKFCRILNPE---  314 (530)
Q Consensus       255 ~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~-------d~--~~~vr----~~a~~~l~~~~~~~~~~---  314 (530)
                      ..||..|++++-++....|....    ..-++.++..++.       ++  ..+++    +...-.++.+++.+...   
T Consensus      1011 ~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ 1090 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKL 1090 (1610)
T ss_pred             HHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999988877665432    2234444444444       11  01221    12333444555443221   


Q ss_pred             --------HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhh
Q 009632          315 --------LAIQHILPCVKELSSDSSQHVRSALASVIMGM  346 (530)
Q Consensus       315 --------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l  346 (530)
                              ...+.++..++.+..+.+..+..+++.++..+
T Consensus      1091 llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1091 LLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence                    23467777888888888888888888777654

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=93.89  E-value=7.2  Score=38.41  Aligned_cols=71  Identities=14%  Similarity=0.136  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHH
Q 009632          333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVEL  405 (530)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~  405 (530)
                      -+|+..++.++..+... + +...+.+-|++...-+.++..++..++.++..++.......  -.+.|+..|..+
T Consensus       290 ~~V~Aa~A~A~v~l~~l-P-~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~f  362 (441)
T PF12054_consen  290 VRVLAAAASALVALGGL-P-KKLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTF  362 (441)
T ss_pred             HHHHHHHHHHHHHhccC-C-CCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhh
Confidence            35666666666555322 2 33455556666666677889999999999999987764211  124566666554

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=93.86  E-value=6.3  Score=37.71  Aligned_cols=225  Identities=16%  Similarity=0.165  Sum_probs=123.5

Q ss_pred             HHHHHH-hhcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHH--HHHhhcCC-chhHHHHHHHHHHHHhhhc-Cchh
Q 009632          164 LRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSI--FEDLTQDD-QDSVRLLAVEGCAALGKLL-EPQD  237 (530)
Q Consensus       164 l~~~l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~--l~~~~~d~-~~~vr~~a~~~l~~l~~~~-~~~~  237 (530)
                      ..+.+. -++.|+ .+||.++...+..++..... ..+.+.=++.  ..++..|. ++.=|+.|++.+..+.+.- |.+.
T Consensus        26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~  104 (371)
T PF14664_consen   26 FGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE  104 (371)
T ss_pred             HHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence            333343 345555 99999999999887764322 1111111122  22333343 4456889999999888773 3344


Q ss_pred             hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---
Q 009632          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---  314 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---  314 (530)
                      +...++..+....++.+.+.|..+.+++.+++-.-++-.....=+..+.+.+.|...++....+.++-.+...-...   
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl  184 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL  184 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh
Confidence            55668888888888888899999999998887553322222233455666666654455555555555444322111   


Q ss_pred             ---HHHhhhhHhHhHh----ccCCc--HHHHHHHHHHHHhhcccc-C-----HHHHHHhHHHHHHHhhcCCChHHHHHHH
Q 009632          315 ---LAIQHILPCVKEL----SSDSS--QHVRSALASVIMGMAPLL-G-----KDATIEQLLPIFLSLLKDEFPDVRLNII  379 (530)
Q Consensus       315 ---~~~~~l~~~l~~~----~~d~~--~~vr~~~~~~l~~l~~~~-~-----~~~~~~~l~~~l~~~l~d~~~~vr~~a~  379 (530)
                         .-.+.++..+.+.    .++..  .+.+ .+...+..+.+.. |     ...+  .-+.-+...|.-+..++|...+
T Consensus       185 ~~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Il  261 (371)
T PF14664_consen  185 RPGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAIL  261 (371)
T ss_pred             cCCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHH
Confidence               1123333333333    12221  1222 2223333322221 1     1111  3355577777888888999998


Q ss_pred             HhhHHhhhhhchh
Q 009632          380 SKLDQVNQVIGID  392 (530)
Q Consensus       380 ~~l~~l~~~~~~~  392 (530)
                      +.+-.+...-.+.
T Consensus       262 dll~dllrik~p~  274 (371)
T PF14664_consen  262 DLLFDLLRIKPPS  274 (371)
T ss_pred             HHHHHHHCCCCCC
Confidence            8887776644333

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=93.86  E-value=19  Score=43.06  Aligned_cols=246  Identities=16%  Similarity=0.144  Sum_probs=135.0

Q ss_pred             HHHHHhcChhHHHHHHHhhcHHHHHHhhCh--------Hhhhhcccccccc--ccCCchHHHHHHHHHHh-cccccCCCc
Q 009632           13 VLIDELKNDDIQLRLNSIRRLSTIARALGE--------ERTRKELIPFLSE--NNDDDDEVLLAMAEELG-VFIPYVGGV   81 (530)
Q Consensus        13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~--~~d~~~~vr~~~~~~l~-~~~~~~~~~   81 (530)
                      .+...+...|...|..+...+..+..-...        -+..+..+..+..  +.|.++.+|..+-..+. ++.+.+.. 
T Consensus       485 ~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~laQ-  563 (2341)
T KOG0891|consen  485 CVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLAQ-  563 (2341)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhcC-
Confidence            345666788888898887777665432211        0113344444433  56777777777766664 33232221 


Q ss_pred             cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH--------hcCCccchhHHHHhHhhhhc
Q 009632           82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL--------AAGEWFTARVSACGLFHIAY  153 (530)
Q Consensus        82 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l--------~~~~~~~~r~~~~~~l~~l~  153 (530)
                         +..+-.+.....|+.-.++..+...++.++...+.     +++|.+...        ..+....+.......+..+.
T Consensus       564 ---~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a-----~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i  635 (2341)
T KOG0891|consen  564 ---PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPA-----YVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELI  635 (2341)
T ss_pred             ---chhHHHHHHHhhhhhhhhHHhHHhhccccccccHH-----HHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHH
Confidence               22333345556677888888888888877765442     233333221        11111112222222222222


Q ss_pred             CCCC---hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCc-hhHHHHHHHHHH
Q 009632          154 PSAP---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCA  227 (530)
Q Consensus       154 ~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~  227 (530)
                      ....   ..+...++..+...+.|.+..+-+.+..+++.++...+.  ..+.+.+++.+.+.+.|.. ..-|.++.++++
T Consensus       636 ~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~  715 (2341)
T KOG0891|consen  636 ISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALG  715 (2341)
T ss_pred             HHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence            2111   123444555556667788889999999999999988774  2333467777777776653 456778888888


Q ss_pred             HHhhhcCc----hhhhhccHHHHHHhc-CCCCHHHHHHHHHHHHH
Q 009632          228 ALGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYE  267 (530)
Q Consensus       228 ~l~~~~~~----~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~  267 (530)
                      .+...-+-    -...+.++..+.... .--...+|..+.+.++.
T Consensus       716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~  760 (2341)
T KOG0891|consen  716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGL  760 (2341)
T ss_pred             hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence            87764332    111233333333322 22334566666666653

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.81  E-value=9.3  Score=39.43  Aligned_cols=207  Identities=12%  Similarity=0.154  Sum_probs=126.4

Q ss_pred             hccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhccc-chHHHHHHHHHHHHHHhhcC--hhhhh
Q 009632           47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMR--ESDLV  123 (530)
Q Consensus        47 ~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~--~~~~~  123 (530)
                      +.++|-+..-.+..--+|+.+|..+|.++..--..+....+...+..+++|. |..||-.++.++...+..+.  ++.+.
T Consensus       487 ~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFl  566 (978)
T KOG1993|consen  487 EALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFL  566 (978)
T ss_pred             HhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhh
Confidence            3555555532223345799999999988773222344556666778888887 88899999999999988653  44443


Q ss_pred             hhH---HHHHHHHhcC-CccchhHHHHhHhhhhcCCCChHH---H---HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 009632          124 DWY---IPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDIL---K---TELRSIYTQLCQDDMPMVRRSAASNLGKFAAT  193 (530)
Q Consensus       124 ~~l---~~~l~~l~~~-~~~~~r~~~~~~l~~l~~~~~~~~---~---~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~  193 (530)
                      +++   .-.+..+.+. .....|......++.+..+.++..   .   -+++|.+.+-.+ +++-.|-+.+..+.++...
T Consensus       567 p~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~a  645 (978)
T KOG1993|consen  567 PYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNA  645 (978)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHH
Confidence            332   1222222232 345678888888888777666542   2   334455554433 6778999999999999988


Q ss_pred             hcc--hhhHHHHHHHHHHhhcCCc-hh---HHHHHHHHHHHHhhhcCc-hhhhhccHHHHHHhcCCCCH
Q 009632          194 VEP--AHLKTDIMSIFEDLTQDDQ-DS---VRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSW  255 (530)
Q Consensus       194 ~~~--~~~~~~l~~~l~~~~~d~~-~~---vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~~  255 (530)
                      ++.  ....+.++|.+ ++..|.+ ++   .-+-+++.+..+....+. ..-.-.+.|.+...+.-...
T Consensus       646 lg~qS~~~~~fL~pVI-el~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste  713 (978)
T KOG1993|consen  646 LGAQSFEFYPFLYPVI-ELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTE  713 (978)
T ss_pred             hccCCccchHHHHHHH-HHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhh
Confidence            886  34455566654 4455543 22   445677777777665433 11122355555555544333

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=93.72  E-value=7.4  Score=39.96  Aligned_cols=95  Identities=14%  Similarity=0.103  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhChh--------HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          434 DDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE--------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       434 ~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~--------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      .+.++...+.++. .....+-++++.+|..+....+..        +.++..+|.+..++..++.+|...++.++.++..
T Consensus       516 ~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~  595 (717)
T KOG1048|consen  516 HPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR  595 (717)
T ss_pred             cHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc
Confidence            3445555444443 466788899999998877544321        2347789999999999999999999999999987


Q ss_pred             hcCh-HHHHhhHHHHHHhhccCCCC
Q 009632          505 VMGS-EITCSRLLPVVINASKDRYL  528 (530)
Q Consensus       505 ~~~~-~~~~~~~~p~l~~~l~D~~~  528 (530)
                      ..-. +.+..+.+|-|...+.+..+
T Consensus       596 d~rnk~ligk~a~~~lv~~Lp~~~~  620 (717)
T KOG1048|consen  596 DIRNKELIGKYAIPDLVRCLPGSGP  620 (717)
T ss_pred             CchhhhhhhcchHHHHHHhCcCCCC
Confidence            6653 45678899999999988876

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.72  E-value=2.7  Score=35.80  Aligned_cols=72  Identities=28%  Similarity=0.239  Sum_probs=47.4

Q ss_pred             HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632          395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (530)
Q Consensus       395 ~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  468 (530)
                      .+..++.+.+.+.+++..+|..|++.+..+.+. |-- -....+|.+..+..|+++.+|..|...+..+.+.++
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~   77 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE   77 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence            355666666777777777777777777766542 210 013467777777777777777777777777766654

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.59  E-value=7.3  Score=37.51  Aligned_cols=232  Identities=9%  Similarity=-0.016  Sum_probs=125.0

Q ss_pred             chHHHHHHHHHHHHHHh------hcChhhhhhhHHHHHHHHhcCCccchhH-HHHhHhhh--hcC-CCChHHHHHHHHHH
Q 009632           99 ETCVRDKAVESLCRIGS------QMRESDLVDWYIPLVKRLAAGEWFTARV-SACGLFHI--AYP-SAPDILKTELRSIY  168 (530)
Q Consensus        99 ~~~vR~~a~~~l~~l~~------~~~~~~~~~~l~~~l~~l~~~~~~~~r~-~~~~~l~~--l~~-~~~~~~~~~l~~~l  168 (530)
                      +..+-..|++.++.+..      .++.+.....+...+..+.+...+..-. ....++..  +.. .++.+....++..+
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l  138 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL  138 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence            56777788888887653      4444444433444444443333332222 22222221  111 12333445566666


Q ss_pred             HhhcC-CCChhHHHHHHHHHHHHHhhhcchh--hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhc-cHH
Q 009632          169 TQLCQ-DDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH-ILP  244 (530)
Q Consensus       169 ~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~  244 (530)
                      ..+-+ -++..+-...+.++..+....+...  ....-+|.+...+-+....+|..|......+...++++..... +.+
T Consensus       139 ~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~  218 (372)
T PF12231_consen  139 HNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLE  218 (372)
T ss_pred             HHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence            55554 4566777777788888877766522  2234566666666677888999988888888877776433222 222


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhH
Q 009632          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV  324 (530)
Q Consensus       245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l  324 (530)
                      .+.....+ . ......++.+..+...-+......+++..+..++.+..                 +..-...+..+...
T Consensus       219 ~~~~~~~~-~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~v~  279 (372)
T PF12231_consen  219 DLQRSLEN-G-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLKVP  279 (372)
T ss_pred             Hhcccccc-c-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHHHH
Confidence            22222222 2 45555555555555432222233456666666664431                 01111224445555


Q ss_pred             hHhccCCcHHHHHHHHHHHHhhccc
Q 009632          325 KELSSDSSQHVRSALASVIMGMAPL  349 (530)
Q Consensus       325 ~~~~~d~~~~vr~~~~~~l~~l~~~  349 (530)
                      ....+++++.+|..+..++..+...
T Consensus       280 e~cFn~~d~~~k~~A~~aW~~liy~  304 (372)
T PF12231_consen  280 EKCFNSSDPQVKIQAFKAWRRLIYA  304 (372)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            5566777888888888887776653

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=93.56  E-value=1.6  Score=37.36  Aligned_cols=118  Identities=13%  Similarity=0.070  Sum_probs=61.0

Q ss_pred             HHhhhcccchHHHHHHHHHHHHHHhhcChh--hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHH
Q 009632           91 LETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (530)
Q Consensus        91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l  168 (530)
                      +..+++-.....-...+..++.+...++..  .....++..+..+-.+++...|..+-.+++.....+|++..=.++|.-
T Consensus         5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLn   84 (198)
T PF08161_consen    5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLN   84 (198)
T ss_pred             HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCC
Confidence            333443333444444455555555544432  112223444455556666778888888888888888887665666644


Q ss_pred             HhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 009632          169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED  209 (530)
Q Consensus       169 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  209 (530)
                      ... .+....-|...+-.|........=..+.++++|....
T Consensus        85 l~~-~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~  124 (198)
T PF08161_consen   85 LDN-ADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARR  124 (198)
T ss_pred             ccC-CCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHH
Confidence            332 2223333444443443333322224556667775543

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.54  E-value=12  Score=39.68  Aligned_cols=92  Identities=23%  Similarity=0.234  Sum_probs=68.5

Q ss_pred             hhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--HH---HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-
Q 009632          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-  391 (530)
Q Consensus       318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-  391 (530)
                      ..++..-..++.+++-++|..++..+......+..  +.   .....+|.++..+.++++-+-..|++++..++...|. 
T Consensus       802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF  881 (1014)
T KOG4524|consen  802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF  881 (1014)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence            44555556778889999999999888765444321  22   2457799999999999999999999999999887764 


Q ss_pred             --hHHHhhHHHHHHHHhcCC
Q 009632          392 --DLLSQSLLPAIVELAEDR  409 (530)
Q Consensus       392 --~~~~~~l~~~l~~~~~~~  409 (530)
                        ..+.+.++|.+..++++.
T Consensus       882 v~sR~l~dvlP~l~~~~~~~  901 (1014)
T KOG4524|consen  882 VASRFLEDVLPWLKHLCQDS  901 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence              234567888887776654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.46  E-value=5.8  Score=35.95  Aligned_cols=58  Identities=17%  Similarity=0.111  Sum_probs=39.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHh-ChhHHh-hhhHHHHHhhc-cCCChHHHHHHHHHHHHHhh
Q 009632          447 DKVYSIRDAAANNLKRLAEEF-GPEWAM-QHITPQVLEMI-NNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       447 d~~~~Vr~~a~~~l~~l~~~~-~~~~~~-~~i~~~l~~~~-~d~~~~vr~~a~~~l~~i~~  504 (530)
                      ++++.+|...++++-.++..- |.+... ..+.|.+..+- ..++.++|..+.+....+..
T Consensus       255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            688899999999998887654 444332 45666666543 44677888876666665554

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.41  E-value=2.1  Score=34.76  Aligned_cols=47  Identities=15%  Similarity=0.206  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHhChhHHh-hhhHHHHHhhccCCChHHHHHHHHH
Q 009632          450 YSIRDAAANNLKRLAEEFGPEWAM-QHITPQVLEMINNPHYLYRMTILRA  498 (530)
Q Consensus       450 ~~Vr~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~  498 (530)
                      ..+...++++++............ ..+++.+.+.+++++.  |..|+++
T Consensus       100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c  147 (148)
T PF08389_consen  100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC  147 (148)
T ss_dssp             HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence            455666666666655544333222 3356666665544443  4555544

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.32  E-value=1.7  Score=37.09  Aligned_cols=72  Identities=17%  Similarity=0.046  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC
Q 009632          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE  234 (530)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~  234 (530)
                      .+..++.+++++.+++..+|..|++.+..+.+.-  -......+|.+..+..|+++.+|..|...+..+.+..+
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~   77 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE   77 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence            3455666777888999999999999998887631  11124688999999999999999999999988876654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.32  E-value=0.61  Score=35.74  Aligned_cols=69  Identities=13%  Similarity=0.094  Sum_probs=43.5

Q ss_pred             hHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhh--HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632          397 SLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       397 ~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~--~~-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  465 (530)
                      .++..|.+++.. .+..+-..|+.=++.++...+...  .. -.....+++++.+++++||..|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            455556666533 356666677777777777664322  21 2356677888888888888888888877654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=93.24  E-value=6.9  Score=36.19  Aligned_cols=165  Identities=15%  Similarity=0.113  Sum_probs=117.0

Q ss_pred             hHHHHHHHHHHHHhhhcCchhhhhc---cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCC
Q 009632          217 SVRLLAVEGCAALGKLLEPQDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRD  291 (530)
Q Consensus       217 ~vr~~a~~~l~~l~~~~~~~~~~~~---~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d  291 (530)
                      -|...|++....+.+.+|++.+...   ..|-+..++...+-.||-.....+....-.+|...  ....++..++..++|
T Consensus        70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLed  149 (307)
T PF04118_consen   70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLED  149 (307)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccccc
Confidence            4888899999999999888654332   44555666666777899988888877665555521  123455556667788


Q ss_pred             CcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC-------HHH---H----HH
Q 009632          292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-------KDA---T----IE  357 (530)
Q Consensus       292 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-------~~~---~----~~  357 (530)
                      +..++...+.+.+..+...+|.+.+.+.+.-.+.     .++.+|..++..+..-.....       .+.   .    ..
T Consensus       150 e~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (307)
T PF04118_consen  150 EGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPG  224 (307)
T ss_pred             CCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCcc
Confidence            8999999999999999999999877666665554     456788888887765443322       011   0    23


Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (530)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (530)
                      -++..+...++|++.-|+..+++.+-.-.
T Consensus       225 Llv~al~~~L~D~~iLVqR~~LDlLl~~~  253 (307)
T PF04118_consen  225 LLVRALCACLEDENILVQRGFLDLLLSHF  253 (307)
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence            45677788888988888888877765543

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.23  E-value=3.4  Score=38.72  Aligned_cols=140  Identities=11%  Similarity=0.114  Sum_probs=68.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhCCcccc--cchHHHHHHhcCC----CcHHHHHHHHHHHHHHHHhhCHH--HHHhhh
Q 009632          249 FSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRD----NEAEVRIAAAGKVTKFCRILNPE--LAIQHI  320 (530)
Q Consensus       249 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l  320 (530)
                      +++.+++.+...++..+..+...-+.....  ..+++.+++.+.+    ++.+++..++.++..+...-...  .+....
T Consensus       113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~  192 (312)
T PF03224_consen  113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG  192 (312)
T ss_dssp             H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence            556667777777777777776554433221  2445555555443    44556677777777776532211  222334


Q ss_pred             hHhHhHhc-------cCCcHHHHHHHHHHHHhhccc--cCHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhh
Q 009632          321 LPCVKELS-------SDSSQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       321 ~~~l~~~~-------~d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~  388 (530)
                      ++.+...+       ...+.++...++-++..+.-.  .-.......++|.+...+++. .+.|-..++.++.+++..
T Consensus       193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~  270 (312)
T PF03224_consen  193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK  270 (312)
T ss_dssp             HHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            44444444       123345556666555544311  111122234677777777654 345555666666666544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=93.21  E-value=24  Score=42.27  Aligned_cols=250  Identities=16%  Similarity=0.141  Sum_probs=144.1

Q ss_pred             ccCCchHHHHHHHHHHhcccccCCC--------ccchhcchhHHHhh-hcccchHHHHHHHHHHHHHHhhcChhhhhhhH
Q 009632           56 NNDDDDEVLLAMAEELGVFIPYVGG--------VEHAHVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMRESDLVDWY  126 (530)
Q Consensus        56 ~~d~~~~vr~~~~~~l~~~~~~~~~--------~~~~~~l~~~l~~l-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  126 (530)
                      +..+++++|..++..+..+......        -+....++..+..+ ..|.++.+|......+.   +.+.+....+..
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~  566 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDL  566 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchh
Confidence            4567889999998777655443221        11234444444443 46778888887665555   332232333344


Q ss_pred             HHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcC----CCChhHHHHHHHHHHHHHhhhcc--hhhH
Q 009632          127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ----DDMPMVRRSAASNLGKFAATVEP--AHLK  200 (530)
Q Consensus       127 ~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~----d~~~~vR~~a~~~l~~l~~~~~~--~~~~  200 (530)
                      +.......+++....+..+...++.++..-+....+.+....+...+    +....+...+..-+..+......  ..+.
T Consensus       567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v  646 (2341)
T KOG0891|consen  567 LRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV  646 (2341)
T ss_pred             HHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc
Confidence            55556666777777888888888777765544344444444444333    22233333333323222221111  1222


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCC---
Q 009632          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP---  274 (530)
Q Consensus       201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~---  274 (530)
                      ..++..+...+.|.+..+-..+..+++.++...|.+  .+.+.+++.+.+.+.|. +..-|.++.++++++.+.-|-   
T Consensus       647 ~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~  726 (2341)
T KOG0891|consen  647 GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVD  726 (2341)
T ss_pred             CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEec
Confidence            334455566677888888899999999999988842  23345677777766664 455677888888888765432   


Q ss_pred             -cccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHH
Q 009632          275 -EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFC  308 (530)
Q Consensus       275 -~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~  308 (530)
                       ....+.++..+...+. .....+|.++++.++..+
T Consensus       727 p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g  762 (2341)
T KOG0891|consen  727 PYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG  762 (2341)
T ss_pred             ccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence             1123345555555444 334567888888777443

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.93  E-value=3  Score=33.67  Aligned_cols=106  Identities=8%  Similarity=-0.012  Sum_probs=69.1

Q ss_pred             CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----hhhhccHHHHHH
Q 009632          173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVN  248 (530)
Q Consensus       173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~  248 (530)
                      ..++|..-...|..+..=      +.-..+.+..+.+.+.+.++.|...|+..+..+.+.+|..    .-...++..+..
T Consensus        14 ~~~dw~~il~icD~I~~~------~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k   87 (144)
T cd03568          14 TSENWGLILDVCDKVKSD------ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK   87 (144)
T ss_pred             CCcCHHHHHHHHHHHhcC------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence            345665554444444321      1223456677777888888889999999999999988863    223346666666


Q ss_pred             hcCC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHH
Q 009632          249 FSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPA  284 (530)
Q Consensus       249 ~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  284 (530)
                      ++++ .+..|+..+...+...+..++.+.....+...
T Consensus        88 l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~  124 (144)
T cd03568          88 LINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDL  124 (144)
T ss_pred             HhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence            6666 67788888888888888777654433333333

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=92.88  E-value=3.2  Score=33.18  Aligned_cols=98  Identities=12%  Similarity=0.112  Sum_probs=70.3

Q ss_pred             hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL  481 (530)
Q Consensus       406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~  481 (530)
                      +.+++|..-...+..+..  +.-|    ....+..+.+-+.++++.|...|+..+-.+++++|..+..    ..++..+.
T Consensus        14 l~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~   87 (139)
T cd03567          14 NREEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI   87 (139)
T ss_pred             CCCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence            345678765555555532  1112    2345666777788999999999999999999999987543    56677777


Q ss_pred             hhccC------CChHHHHHHHHHHHHHhhhcChH
Q 009632          482 EMINN------PHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       482 ~~~~d------~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      +++.+      .+..||..++..+..+...++.+
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~  121 (139)
T cd03567          88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHE  121 (139)
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            77753      46789999999999998887644

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=92.88  E-value=2.6  Score=36.15  Aligned_cols=73  Identities=15%  Similarity=0.142  Sum_probs=38.6

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 009632          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI  317 (530)
Q Consensus       245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  317 (530)
                      .+..+++-.....-..+...++.+...+|....  ...++..+-++-.+++...|..+-.+++...+.+|++.+.
T Consensus         4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL   78 (198)
T PF08161_consen    4 TLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL   78 (198)
T ss_pred             HHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH
Confidence            344444434444555555666666666665421  1122222333334555566777777777777777776554

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=17  Score=40.69  Aligned_cols=112  Identities=12%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhHHhhhhhchhHHHh-------h--HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh---hHHHHHHHH
Q 009632          373 DVRLNIISKLDQVNQVIGIDLLSQ-------S--LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGAL  440 (530)
Q Consensus       373 ~vr~~a~~~l~~l~~~~~~~~~~~-------~--l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~---~~~~~~~~~  440 (530)
                      .|-..++.++..+....|.+.-..       .  --..+.++.+++.+.+|.+..+.+..+.+....-   .-.+.+.|.
T Consensus       201 Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~  280 (1312)
T KOG0803|consen  201 RVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPV  280 (1312)
T ss_pred             HHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHH
Confidence            344455555555555555432111       1  1223556778889999999999888887755432   123456676


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh------hhhHHHHHhhcc
Q 009632          441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM------QHITPQVLEMIN  485 (530)
Q Consensus       441 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~------~~i~~~l~~~~~  485 (530)
                      +.....+.+ -|.-...+.+......+...|..      ..+.|.+.++.+
T Consensus       281 ~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir  330 (1312)
T KOG0803|consen  281 LLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR  330 (1312)
T ss_pred             HHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence            666665554 44444455544444444444432      345666655554

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.80  E-value=2.4  Score=34.20  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=70.5

Q ss_pred             hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL  481 (530)
Q Consensus       406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~  481 (530)
                      +..++|..-...+..+..=  ..|    ....+..+.+-+.++++.|...|+..+..+++++|..+..    ..++..|.
T Consensus        13 l~~~dw~~il~icD~I~~~--~~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~   86 (144)
T cd03568          13 LTSENWGLILDVCDKVKSD--ENG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK   86 (144)
T ss_pred             CCCcCHHHHHHHHHHHhcC--Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence            3456776555554444321  122    2345667777778888999999999999999999876543    56788888


Q ss_pred             hhccC-CChHHHHHHHHHHHHHhhhcChH
Q 009632          482 EMINN-PHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       482 ~~~~d-~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      +++++ .+..|+..++..+..+...++.+
T Consensus        87 kl~~~~~~~~Vk~kil~li~~W~~~f~~~  115 (144)
T cd03568          87 KLINDRVHPTVKEKLREVVKQWADEFKND  115 (144)
T ss_pred             HHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            88877 68889999999999998877643

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=92.77  E-value=9.3  Score=36.42  Aligned_cols=148  Identities=9%  Similarity=0.041  Sum_probs=84.4

Q ss_pred             HhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh------chhHHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHhhhC
Q 009632          357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI------GIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLG  429 (530)
Q Consensus       357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~------~~~~~~~~l~~~l~~-~~~~~~~~~R~~~~~~l~~l~~~~~  429 (530)
                      ++++..+..++..++.+......-+++++...=      -...+...++..+.+ -..|.+-+...+++.++..+.--..
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            458888999999999999988888888887531      112223334444433 3345677888888888887754332


Q ss_pred             -hhhH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hH-HhhhhHHHHHhhccCCChH-HHHHHHHHHHHH
Q 009632          430 -VGFF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW-AMQHITPQVLEMINNPHYL-YRMTILRAISLL  502 (530)
Q Consensus       430 -~~~~-~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~-~~~~i~~~l~~~~~d~~~~-vr~~a~~~l~~i  502 (530)
                       +..+ ...+...++..++-..+.|....+.++.-+......   +. ...+++..+..-...+++. |--...+.+..+
T Consensus       394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l  473 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL  473 (604)
T ss_pred             chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence             2222 233445566666666677777666666555433210   00 0133455555555555544 433344444444


Q ss_pred             hh
Q 009632          503 AP  504 (530)
Q Consensus       503 ~~  504 (530)
                      ++
T Consensus       474 Ik  475 (604)
T KOG4500|consen  474 IK  475 (604)
T ss_pred             HH
Confidence            33

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.71  E-value=0.89  Score=34.87  Aligned_cols=68  Identities=15%  Similarity=0.138  Sum_probs=49.8

Q ss_pred             HHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChh--HH-hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          437 LGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPE--WA-MQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       437 ~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~--~~-~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      ++..+.+++ ...++.+-..||.=+|.+++.++.-  .. .-.....++++++++|.+||..|+.++..++.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            566666666 3346677788999999999887432  21 24567788889999999999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=92.65  E-value=0.55  Score=34.46  Aligned_cols=69  Identities=14%  Similarity=0.044  Sum_probs=46.1

Q ss_pred             CCChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHH
Q 009632          369 DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALC  441 (530)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l  441 (530)
                      |+.+.+|..|++.++.++..++..  .+...+...+.+.+.|+  +...+..|+..+..+    |++.+...++|.+
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l   89 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL   89 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence            456778888888888888877743  34566777777766654  466777777777766    4555555555543

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.61  E-value=6.2  Score=43.88  Aligned_cols=200  Identities=13%  Similarity=0.060  Sum_probs=129.6

Q ss_pred             hhcccchHHHHHHHHHHHHHHhhcChhhhhh---hHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHH
Q 009632           94 LCTVEETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSI  167 (530)
Q Consensus        94 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~---~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~  167 (530)
                      -+.-.|+..|..|...++++......+....   .....+..++.|++.++|......+..+...+.+.   +.+.++|.
T Consensus        49 kL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~  128 (1312)
T KOG0803|consen   49 KLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPP  128 (1312)
T ss_pred             HHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Confidence            3345678889999988988888766544433   24455677778888899998888888887776654   66777787


Q ss_pred             HHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhh--------cC-----------CchhHHHHHHH
Q 009632          168 YTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLT--------QD-----------DQDSVRLLAVE  224 (530)
Q Consensus       168 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~--------~d-----------~~~~vr~~a~~  224 (530)
                      ..-...|.+..|-.+|-..+.....--..    ..+.+.+.++..+.+        .|           ....|-..++.
T Consensus       129 wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl  208 (1312)
T KOG0803|consen  129 WLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLL  208 (1312)
T ss_pred             hhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHH
Confidence            77777888888888887777765541111    112233444444331        11           12345566777


Q ss_pred             HHHHHhhhcCchhhhhc---------cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCC
Q 009632          225 GCAALGKLLEPQDCVAH---------ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDN  292 (530)
Q Consensus       225 ~l~~l~~~~~~~~~~~~---------~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~  292 (530)
                      ++..+....+...-...         --..+-.+.+++++.+|.+..+.+..+...+..-   .....+-|.+.....+.
T Consensus       209 ~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~  288 (1312)
T KOG0803|consen  209 LLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSL  288 (1312)
T ss_pred             HHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHcccccc
Confidence            88888777665322221         1233445678888899999988888877665432   11345667777777766


Q ss_pred             c
Q 009632          293 E  293 (530)
Q Consensus       293 ~  293 (530)
                      +
T Consensus       289 d  289 (1312)
T KOG0803|consen  289 D  289 (1312)
T ss_pred             c
Confidence            5

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.52  E-value=1.5  Score=41.05  Aligned_cols=104  Identities=15%  Similarity=0.070  Sum_probs=56.5

Q ss_pred             hcCCchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHH
Q 009632          211 TQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAY  285 (530)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l  285 (530)
                      +.+-+..||..|++.+..+....+..  .....+++.+..+..|.+..||....+.+..++...+++.   ...-+++++
T Consensus        67 lkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi  146 (393)
T KOG2149|consen   67 LKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYI  146 (393)
T ss_pred             hcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHH
Confidence            34445555555555555444442211  1122344555555556666666666666655554443332   122355666


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 009632          286 VRLLRDNEAEVRIAAAGKVTKFCRILNPE  314 (530)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  314 (530)
                      ...+.+-.+++|.-+++.+..+...+++.
T Consensus       147 ~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  147 SSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            66667777777777777777777766654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.28  E-value=9.9  Score=35.60  Aligned_cols=159  Identities=14%  Similarity=0.108  Sum_probs=75.6

Q ss_pred             HHHhhcCCChHHHHHHHHhhHHhhhhhchhHH--HhhHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhhC--hhhHH
Q 009632          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG--VGFFD  434 (530)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~~----~~~~~R~~~~~~l~~l~~~~~--~~~~~  434 (530)
                      +++.+..+++.+...++..+..+...-+....  .+.+++.+.+.+++    ++......++++++.+...-.  ..++.
T Consensus       110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~  189 (312)
T PF03224_consen  110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK  189 (312)
T ss_dssp             HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh
Confidence            33466666777777777777777654332211  12344444444333    344455777777777754321  22333


Q ss_pred             HHHHHHHHHHh-----cCCcH--HHHHHHHHHHHHHHHHhChh----HHhhhhHHHHHhhccCC-ChHHHHHHHHHHHHH
Q 009632          435 DKLGALCMQWL-----QDKVY--SIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNP-HYLYRMTILRAISLL  502 (530)
Q Consensus       435 ~~~~~~l~~~l-----~d~~~--~Vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i  502 (530)
                      ...++.+...+     .+...  ++.-.++-|+=.  -.+.++    .....++|.+.+.+++. ...|--.++.++.++
T Consensus       190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl--LSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl  267 (312)
T PF03224_consen  190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL--LSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL  267 (312)
T ss_dssp             HHHHHHHHHHHH---------HHHHHHHHHHHHHH--HTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH--HhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            55666666666     22222  233333333221  222222    22244788888776543 333444477788888


Q ss_pred             hhhcCh----HHHHhhHHHHHHhhc
Q 009632          503 APVMGS----EITCSRLLPVVINAS  523 (530)
Q Consensus       503 ~~~~~~----~~~~~~~~p~l~~~l  523 (530)
                      +.....    ..+...+.|.+..+.
T Consensus       268 ~~~~~~~~~~~mv~~~~l~~l~~L~  292 (312)
T PF03224_consen  268 LSKAPKSNIELMVLCGLLKTLQNLS  292 (312)
T ss_dssp             TSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred             HhccHHHHHHHHHHccHHHHHHHHh
Confidence            776552    234555555555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.22  E-value=5.2  Score=32.23  Aligned_cols=97  Identities=14%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE  482 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~  482 (530)
                      .+++|..-...+..+..  ...+    ....+..+.+-+..+++.|...|+..+..+++.+|..+..    ..++..|.+
T Consensus        18 ~~~dw~~ileicD~In~--~~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~   91 (142)
T cd03569          18 GEPDLASILEICDMIRS--KDVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD   91 (142)
T ss_pred             CccCHHHHHHHHHHHhC--CCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence            45677655555554432  1112    3345667777788899999999999999999999876543    567788888


Q ss_pred             hcc-CCChHHHHHHHHHHHHHhhhcChH
Q 009632          483 MIN-NPHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       483 ~~~-d~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      ++. ..+..||..++..+..+...++.+
T Consensus        92 l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          92 LIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            776 467889999999999999887654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=92.09  E-value=23  Score=39.70  Aligned_cols=135  Identities=13%  Similarity=0.122  Sum_probs=81.1

Q ss_pred             CcHHHHHHHHHHHHhhccccCH--HHH--HHhHHHHHHHhhcCC----ChHHHHHHHHhhHHhhhhhch-hH---H--Hh
Q 009632          331 SSQHVRSALASVIMGMAPLLGK--DAT--IEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGI-DL---L--SQ  396 (530)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~-~~---~--~~  396 (530)
                      .....-.+++.++..|+..+..  ..+  .+..+.++...|.-+    .-.+-+.+-..|.++...+.. +.   +  ..
T Consensus       450 ~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~  529 (2195)
T KOG2122|consen  450 KKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH  529 (2195)
T ss_pred             cccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh
Confidence            3334455566666666554431  111  334556666666533    223333333333333333221 11   1  13


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       397 ~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  465 (530)
                      ..+..|+..+++.+..+-..+|.+|.++......+.   +...-++++.+++..++..+-..++.+|..+..
T Consensus       530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN  601 (2195)
T ss_pred             hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence            467778888888888888899999998876544332   334568899999999998888888888887764

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=92.06  E-value=0.31  Score=29.33  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=20.2

Q ss_pred             hhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632          474 QHITPQVLEMINNPHYLYRMTILRAISLLA  503 (530)
Q Consensus       474 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~  503 (530)
                      ...+|.|.+++.+++..+|..+++++++++
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            345667777777777777777777776654

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=91.91  E-value=4.7  Score=36.16  Aligned_cols=130  Identities=18%  Similarity=0.246  Sum_probs=69.8

Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhhC--hhhHHHHHH
Q 009632          367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLG--VGFFDDKLG  438 (530)
Q Consensus       367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~------~~~~R~~~~~~l~~l~~~~~--~~~~~~~~~  438 (530)
                      +...+...|.+|+.++.+=   -|    ..+++|.+..++++.      +-..-...++....+.+.-.  .+.+...++
T Consensus       207 ~dEs~~~~r~aAl~sLr~d---sG----lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm  279 (450)
T COG5095         207 LDESDEQTRDAALESLRND---SG----LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM  279 (450)
T ss_pred             HHHHHHHHHHHHHHHhccC---cc----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence            4445667788877766542   11    245566555554432      22333334444444433111  223456678


Q ss_pred             HHHHHHh------cC----CcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCC--ChHHHHHHHHHHHHHh
Q 009632          439 ALCMQWL------QD----KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISLLA  503 (530)
Q Consensus       439 ~~l~~~l------~d----~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~  503 (530)
                      |.++.++      ++    ....+|.-|+..++..+..++....  ...+...+.+.+-|.  -+...-+|+..+..+.
T Consensus       280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~  358 (450)
T COG5095         280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS  358 (450)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence            8777765      12    2236999999999999998876532  234444444444343  3344555555555443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=91.71  E-value=0.76  Score=37.84  Aligned_cols=128  Identities=13%  Similarity=0.017  Sum_probs=61.6

Q ss_pred             ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhh-HHHHHHHHHHhhc-
Q 009632          138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHL-KTDIMSIFEDLTQ-  212 (530)
Q Consensus       138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~-~~~l~~~l~~~~~-  212 (530)
                      ...+|..+.-++..+.+..++...+.+.+++...+.+.+..-...++.++..+....+.   ..+ .+.+.+.+..++. 
T Consensus        18 ~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~   97 (157)
T PF11701_consen   18 PEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR   97 (157)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred             CHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence            44567766666666542222234455555555565555444444555555555443222   111 2345555555555 


Q ss_pred             -CCchhHHHHHHHHHHHHhhhcCc-hhhhhccHHHHHHhcC-CCCHH-HHHHHHHHH
Q 009632          213 -DDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQ-DKSWR-VRYMVANQL  265 (530)
Q Consensus       213 -d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~-d~~~~-vr~~~~~~l  265 (530)
                       .++..+...+++.+..-+..-.- ..+..+..+.+....+ +++.. +|..++-.|
T Consensus        98 ~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L  154 (157)
T PF11701_consen   98 KSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL  154 (157)
T ss_dssp             CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence             44555666666666543321110 2234456666666664 33333 455444443

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=91.67  E-value=0.41  Score=29.02  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632          435 DKLGALCMQWLQDKVYSIRDAAANN  459 (530)
Q Consensus       435 ~~~~~~l~~~l~d~~~~Vr~~a~~~  459 (530)
                      +.+...+...+.|+.+.||++|+..
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4566666777777777777777654

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.55  E-value=20  Score=39.72  Aligned_cols=216  Identities=16%  Similarity=0.117  Sum_probs=127.8

Q ss_pred             hcccchHHHHHHHHHHHHHHhhcChhhh--hhhHHHHHHHHhcCCc----cchhH--HHHhHhh-hhcCCCChHHHHHHH
Q 009632           95 CTVEETCVRDKAVESLCRIGSQMRESDL--VDWYIPLVKRLAAGEW----FTARV--SACGLFH-IAYPSAPDILKTELR  165 (530)
Q Consensus        95 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~~~~----~~~r~--~~~~~l~-~l~~~~~~~~~~~l~  165 (530)
                      ...+..+||....+++-.+.+..+....  +..+...+..+.....    .-+|.  .+.+++. .....++.+....++
T Consensus       851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li  930 (1610)
T KOG1848|consen  851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI  930 (1610)
T ss_pred             hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence            4566788999999999999988776332  4456666655543332    11222  2333332 234456666777777


Q ss_pred             HHHHhhcC-CCChhHHHHHHHHH---HHHHhh----hc----------------------chhhHHHHHHHHHHhhcCCc
Q 009632          166 SIYTQLCQ-DDMPMVRRSAASNL---GKFAAT----VE----------------------PAHLKTDIMSIFEDLTQDDQ  215 (530)
Q Consensus       166 ~~l~~l~~-d~~~~vR~~a~~~l---~~l~~~----~~----------------------~~~~~~~l~~~l~~~~~d~~  215 (530)
                      ..+...+. ..+-++--.|+..+   +.+...    .+                      ++..+-.++..+.+++.|+.
T Consensus       931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr 1010 (1610)
T KOG1848|consen  931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSR 1010 (1610)
T ss_pred             HHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccch
Confidence            77766553 22333333333222   222221    00                      12233446667778889999


Q ss_pred             hhHHHHHHHHHHHHhhhc----Cc----hhhhhccHHHHHHhcC--CCCHH-------HHHHHHHHHHHHHHHhCCcc--
Q 009632          216 DSVRLLAVEGCAALGKLL----EP----QDCVAHILPVIVNFSQ--DKSWR-------VRYMVANQLYELCEAVGPEP--  276 (530)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~----~~----~~~~~~~~~~l~~~~~--d~~~~-------vr~~~~~~l~~l~~~~~~~~--  276 (530)
                      .+||..|++++-.+...-    ++    ..++..++|.+...-.  -++|.       --+..+-+|+.+++.+....  
T Consensus      1011 ~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ 1090 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKL 1090 (1610)
T ss_pred             HHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999998887643    33    2345566676652110  01121       12356667777777654321  


Q ss_pred             ---------cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 009632          277 ---------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  310 (530)
Q Consensus       277 ---------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  310 (530)
                               .-+.++.++.++..+.++++..++++++..+...
T Consensus      1091 llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1091 LLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence                     1245777777888899999999999999877653

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=91.37  E-value=0.54  Score=28.29  Aligned_cols=29  Identities=24%  Similarity=0.088  Sum_probs=20.4

Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632          436 KLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (530)
Q Consensus       436 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~  464 (530)
                      ..+|.+.+++++++..|++.|+.+++.++
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            35677777777777777777777777664

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.28  E-value=16  Score=36.09  Aligned_cols=335  Identities=15%  Similarity=0.102  Sum_probs=179.1

Q ss_pred             HHHHHHhhcCCC---ChhHHHHHHHHHHHHHh--hhcchhhHH--HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-
Q 009632          164 LRSIYTQLCQDD---MPMVRRSAASNLGKFAA--TVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-  235 (530)
Q Consensus       164 l~~~l~~l~~d~---~~~vR~~a~~~l~~l~~--~~~~~~~~~--~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-  235 (530)
                      ++..+..+++++   +..+-..+..+++....  .++++.+..  .++......+++  +..-..|.+++..+....-. 
T Consensus       154 ~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~  231 (559)
T KOG2081|consen  154 VLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSD--DELHEEATECICALLYCSLDR  231 (559)
T ss_pred             HHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhh
Confidence            444444554433   24455566666666554  333333222  244555555553  34555566655555443211 


Q ss_pred             hh---h------hhccHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCccc--ccc---hHHHHHHhcCCCcHHHHHHH
Q 009632          236 QD---C------VAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPT--RMD---LVPAYVRLLRDNEAEVRIAA  300 (530)
Q Consensus       236 ~~---~------~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~---l~~~l~~~l~d~~~~vr~~a  300 (530)
                      +.   +      ...++|...+. ....+..-+.+.+..+..+++.+-....  .+.   ++..++-....++.+|-+..
T Consensus       232 ~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~S  311 (559)
T KOG2081|consen  232 SEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEAS  311 (559)
T ss_pred             hccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhh
Confidence            11   1      11233333332 2345566777888888888776421110  123   33334444466667777666


Q ss_pred             HHHHHHHHHhh---CHHHHHhhhhHhHhHhc-------c------------CCcHHHHHHHHHHHHhhccccCHHHHHHh
Q 009632          301 AGKVTKFCRIL---NPELAIQHILPCVKELS-------S------------DSSQHVRSALASVIMGMAPLLGKDATIEQ  358 (530)
Q Consensus       301 ~~~l~~~~~~~---~~~~~~~~l~~~l~~~~-------~------------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  358 (530)
                      ....-.+.+..   ..+.....+-|++.+++       +            +.-.+.|..+...+...+...|.+.-.+.
T Consensus       312 F~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~  391 (559)
T KOG2081|consen  312 FNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQ  391 (559)
T ss_pred             HHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            65554444432   11222222333333221       1            11236788888888887777776554443


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhChhh-HHH
Q 009632          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGF-FDD  435 (530)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~~~~-~~~  435 (530)
                      +.-.+..  +..+|+.-++++-.+..+.+.+.++.  ..++|.+.+.+-+-  ...+|.+++..++.+.+-+.... +.+
T Consensus       392 ~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le  467 (559)
T KOG2081|consen  392 MYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLE  467 (559)
T ss_pred             HHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            3222222  36689999999999999998887654  45667666654432  34599999999999988765433 334


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-----hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChH
Q 009632          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-----QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       436 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      -+..++...+.++.  .-..+..++..++..+......     ..++-.+.....  +.+... .++.++.++..++..
T Consensus       468 ~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~--~~e~a~-l~~~~s~i~~~lp~~  541 (559)
T KOG2081|consen  468 PVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQI--NEEAAC-LLQGISLIISNLPAH  541 (559)
T ss_pred             HHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--cHHHHH-HHHHHHHHHhcCCHh
Confidence            45666666666655  5555666666666554322110     112222222222  233333 677777777777654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=91.21  E-value=14  Score=35.16  Aligned_cols=69  Identities=16%  Similarity=0.127  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          436 KLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       436 ~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      .++..+.+++..++ +.+-..||.=+|+.++.++....   +-.....++++++++|.+||-+|+.|+..++.
T Consensus       366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            36777777776544 67778889999999988753311   13346678889999999999999999988764

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=91.06  E-value=5.7  Score=31.97  Aligned_cols=73  Identities=12%  Similarity=0.134  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhh----HHHHHHHHHHhhcCCc--hh--HHHHHHHHHHHHhhhc
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQDDQ--DS--VRLLAVEGCAALGKLL  233 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d~~--~~--vr~~a~~~l~~l~~~~  233 (530)
                      .+....+.+-+...++.+...|+..+..+.+++|....    ...++..+..++.+..  +.  ||..+++.+...+..+
T Consensus        41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            44555555666667788888888888888777765322    2335555555554332  12  6777777776666665


Q ss_pred             C
Q 009632          234 E  234 (530)
Q Consensus       234 ~  234 (530)
                      +
T Consensus       121 ~  121 (140)
T PF00790_consen  121 K  121 (140)
T ss_dssp             T
T ss_pred             C
Confidence            3

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.95  E-value=5.2  Score=31.85  Aligned_cols=96  Identities=15%  Similarity=0.168  Sum_probs=68.6

Q ss_pred             cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE  482 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~  482 (530)
                      .+++|..-...+..+..-      +.-....+..+.+-+..+++.|...|+..+..+...+|..+..    .+++..+.+
T Consensus        14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~   87 (133)
T cd03561          14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK   87 (133)
T ss_pred             CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence            456676555544444322      1112345667778888899999999999999999999876543    355666777


Q ss_pred             hccC---CChHHHHHHHHHHHHHhhhcCh
Q 009632          483 MINN---PHYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       483 ~~~d---~~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      ++..   .+..||..++..+..+...++.
T Consensus        88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          88 IAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            7765   4778999999999999888765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=90.94  E-value=21  Score=36.87  Aligned_cols=106  Identities=19%  Similarity=0.228  Sum_probs=67.6

Q ss_pred             CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcc-----cccccc-ccCCchHHHHHHHHHHhcccccCCC-c
Q 009632            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKEL-----IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG-V   81 (530)
Q Consensus         9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l-----~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~-~   81 (530)
                      ..+...+..+.++++..-.+|...+..++.  +.++....+     +|.+.. +...+.+|++.++.+|.+++-.-.+ .
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcf--gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCF--GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHh--hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence            346677788889999998888888888754  333333322     333444 5568999999999999988653222 1


Q ss_pred             cch--hc--chhHHHhhh-cccchHHHHHHHHHHHHHHhh
Q 009632           82 EHA--HV--LLPPLETLC-TVEETCVRDKAVESLCRIGSQ  116 (530)
Q Consensus        82 ~~~--~~--l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~  116 (530)
                      +..  ..  =++.+.+++ ...|.+||+.....|-++.+.
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~  350 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN  350 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence            211  11  123444444 346888999888666666554

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=90.91  E-value=19  Score=36.22  Aligned_cols=155  Identities=11%  Similarity=0.123  Sum_probs=95.4

Q ss_pred             hhhhhhHHHHHHHHhcCCccch--hHHHHhHhhhhcCCCChHH-HHH---HHHHHHhhcC-----CCChhHHHHHHHHHH
Q 009632          120 SDLVDWYIPLVKRLAAGEWFTA--RVSACGLFHIAYPSAPDIL-KTE---LRSIYTQLCQ-----DDMPMVRRSAASNLG  188 (530)
Q Consensus       120 ~~~~~~l~~~l~~l~~~~~~~~--r~~~~~~l~~l~~~~~~~~-~~~---l~~~l~~l~~-----d~~~~vR~~a~~~l~  188 (530)
                      .+.+.+....+.+...+..|..  --..|.++|.+...+++.. +.-   ++.-++.+|.     |.-.-|.......+|
T Consensus       476 ~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG  555 (1053)
T COG5101         476 DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG  555 (1053)
T ss_pred             hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec
Confidence            4455666666666666664444  3367888888888877752 222   3333334443     333333333333333


Q ss_pred             HHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc----------hhhhhccHHHHHHhcCCCCHHH
Q 009632          189 KFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----------QDCVAHILPVIVNFSQDKSWRV  257 (530)
Q Consensus       189 ~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~~~~~l~~~~~d~~~~v  257 (530)
                      .+-..+.. -.+...++..+.+++....+-|+..|..++..+++.++-          +.+..+++.-+.....|-.+.-
T Consensus       556 QYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ  635 (1053)
T COG5101         556 QYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQ  635 (1053)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHH
Confidence            33322211 234555667777788777788999999999999887753          3344555555566667878888


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 009632          258 RYMVANQLYELCEAVGP  274 (530)
Q Consensus       258 r~~~~~~l~~l~~~~~~  274 (530)
                      .....++++-+.+..++
T Consensus       636 ~htfYeAcg~vIse~p~  652 (1053)
T COG5101         636 KHTFYEACGMVISEVPK  652 (1053)
T ss_pred             HhHHHHHHhHHHhccch
Confidence            88888888888776554

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=90.89  E-value=20  Score=36.33  Aligned_cols=86  Identities=24%  Similarity=0.354  Sum_probs=55.8

Q ss_pred             HHhhccccCHHHHHHhHHHHHHHhh-cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHH----HhcCCChHHHHHH
Q 009632          343 IMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE----LAEDRHWRVRLAI  417 (530)
Q Consensus       343 l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~----~~~~~~~~~R~~~  417 (530)
                      ++.+.+.+.+.. ..+++-.+..++ ..+...+|.++++.++.+++...++...+.+.|.+..    ++.|++|-++..|
T Consensus       465 ~~~~~~~l~~~~-i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~A  543 (559)
T PF14868_consen  465 LSFFIQLLDPQL-IEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHA  543 (559)
T ss_pred             HHHHHHhcChHH-HHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHH
Confidence            333333333333 334444455555 3445558888888888888877766655566666544    4688889999999


Q ss_pred             HHHHHHHHhhhC
Q 009632          418 IEYIPLLASQLG  429 (530)
Q Consensus       418 ~~~l~~l~~~~~  429 (530)
                      +++++.++....
T Consensus       544 LeAF~~FAe~T~  555 (559)
T PF14868_consen  544 LEAFGQFAERTS  555 (559)
T ss_pred             HHHHHHHhccCC
Confidence            998888886543

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=90.84  E-value=7.5  Score=31.41  Aligned_cols=140  Identities=19%  Similarity=0.204  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-CCcHH
Q 009632          256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQH  334 (530)
Q Consensus       256 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~  334 (530)
                      .+|...+.++..++....++.. +.+++.+.+.+..+ +.-....+..|..+.+.+..             ..+ +....
T Consensus         3 ~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~~   67 (148)
T PF08389_consen    3 FIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQE   67 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHHH
T ss_pred             hHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhHH
Confidence            4677788888888877654443 35677777777663 44555555555555543211             000 11111


Q ss_pred             HHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCC----hHHHHHHHHhhHHhhhhhchhHHHh-hHHHHHHHHhcCC
Q 009632          335 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQ-SLLPAIVELAEDR  409 (530)
Q Consensus       335 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~-~l~~~l~~~~~~~  409 (530)
                      -|....+.+..         ..+.++.++.+.+....    ..+...+++++...+..+..+.+.. .+++.+.+++.++
T Consensus        68 r~~~l~~~l~~---------~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~  138 (148)
T PF08389_consen   68 RRRELKDALRS---------NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP  138 (148)
T ss_dssp             HHHHHHHHHHH---------HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHH---------HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence            22222222211         13344455555554332    6677777777777777665554443 4777777777555


Q ss_pred             ChHHHHHHHHHH
Q 009632          410 HWRVRLAIIEYI  421 (530)
Q Consensus       410 ~~~~R~~~~~~l  421 (530)
                      +.  |..|+++|
T Consensus       139 ~~--~~~A~~cl  148 (148)
T PF08389_consen  139 EL--REAAAECL  148 (148)
T ss_dssp             CC--HHHHHHHH
T ss_pred             HH--HHHHHHhC
Confidence            43  66666654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=90.72  E-value=19  Score=35.94  Aligned_cols=144  Identities=15%  Similarity=0.024  Sum_probs=92.2

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh----hH
Q 009632          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FF  433 (530)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----~~  433 (530)
                      .....+.....|-++.+|..+...++..++.+..-...-..+...-+.++|.+..+|......+..++..-+..    .+
T Consensus       275 icdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f  354 (740)
T COG5537         275 ICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF  354 (740)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            33445666677888899999999998887776544333344555566788889999999999998887755422    23


Q ss_pred             HHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          434 DDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       434 ~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      .+.+..-++..+ .|.+. ||..+++.+..+....-   ....-+..+..+.-|.+++-|....+++..+++.
T Consensus       355 ~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~---L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~  423 (740)
T COG5537         355 VERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGV---LSSSEILIVSSCMLDIIPDSRENIVESVESICKI  423 (740)
T ss_pred             HHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcc---cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            344444455544 45555 99999999887654321   1122334444556676666555555666555554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.72  E-value=23  Score=36.76  Aligned_cols=311  Identities=14%  Similarity=0.130  Sum_probs=160.2

Q ss_pred             CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC
Q 009632          174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD  252 (530)
Q Consensus       174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d  252 (530)
                      .+-.+=|+.|+.+|..+++....+.....+-|++..+-.|- ++++-..+++++..+..+-...        .   ..+|
T Consensus        34 sTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~--------~---v~dd  102 (970)
T KOG0946|consen   34 STLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP--------E---VMDD  102 (970)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch--------h---hccc
Confidence            44566699999999999987766555455555555555554 4566777777776665442200        0   0011


Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH-----HHhhhhHhHhHh
Q 009632          253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-----AIQHILPCVKEL  327 (530)
Q Consensus       253 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-----~~~~l~~~l~~~  327 (530)
                      +. .+ ......|...   +-.   .+..+..+++.+..-+.-||..+++.+..+...-|.+.     ..+.-+..+..+
T Consensus       103 s~-qs-dd~g~~iae~---fik---~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen  103 ST-QS-DDLGLWIAEQ---FIK---NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             ch-hh-hHHHHHHHHH---HHc---CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence            11 11 1111111111   110   23455666666666666777777777777766555541     112333444555


Q ss_pred             ccCCcHHHHHHHHHHHHhhccccCHHH---HHHhHHHHHHHhhcCC----ChHHHHHHHHhhHHhhhhhchh--HH-Hhh
Q 009632          328 SSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGID--LL-SQS  397 (530)
Q Consensus       328 ~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~--~~-~~~  397 (530)
                      +.|...-+|-.++-.+..+....+.-.   ..+.+..-++..+..+    ..-|-..++..+-++.+.-..+  .+ ...
T Consensus       175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~  254 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS  254 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence            666666677777666666655444211   1223333344444322    1234455555555555433222  11 135


Q ss_pred             HHHHHHHHh-----cCC---ChH-HHHHHHHHHHHHHhh-hCh------------hhHHHHHHHHHHHHhcCC--cHHHH
Q 009632          398 LLPAIVELA-----EDR---HWR-VRLAIIEYIPLLASQ-LGV------------GFFDDKLGALCMQWLQDK--VYSIR  453 (530)
Q Consensus       398 l~~~l~~~~-----~~~---~~~-~R~~~~~~l~~l~~~-~~~------------~~~~~~~~~~l~~~l~d~--~~~Vr  453 (530)
                      .+|.+.+++     .|.   .|. -|..-+.+.-.+... +.+            ..+..+++..+...+..+  ...|+
T Consensus       255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl  334 (970)
T KOG0946|consen  255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL  334 (970)
T ss_pred             cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence            566666543     332   454 343333322222222 111            112345666666665544  45799


Q ss_pred             HHHHHHHHHHHHHhChh---HH----------hhhhHHHHHhhccCC-ChHHHHHHHHHHHHHh
Q 009632          454 DAAANNLKRLAEEFGPE---WA----------MQHITPQVLEMINNP-HYLYRMTILRAISLLA  503 (530)
Q Consensus       454 ~~a~~~l~~l~~~~~~~---~~----------~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~  503 (530)
                      ..++.+++.+++.....   +.          ...++--+..+.+.. .+..|.+..+++..+.
T Consensus       335 tesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l  398 (970)
T KOG0946|consen  335 TESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL  398 (970)
T ss_pred             HHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            99999998887653211   10          122333444555554 6678888888887654

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=90.45  E-value=3  Score=31.66  Aligned_cols=62  Identities=13%  Similarity=0.116  Sum_probs=45.7

Q ss_pred             CChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhh
Q 009632          175 DMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC  238 (530)
Q Consensus       175 ~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~  238 (530)
                      .+..-|+.+..+++.+.+..++  ..+.+++...+...+..+  +.|..|++++..+.+.+++++.
T Consensus        27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l   90 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL   90 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence            5667899999999999994443  233455555555555554  7999999999999999887553

; GO: 0004674 protein serine/threonine kinase activity

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=90.34  E-value=18  Score=34.89  Aligned_cols=72  Identities=10%  Similarity=-0.006  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-hh-----hHHHHHhhccCCCh----HHHHHHHHHHHHH
Q 009632          433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-QH-----ITPQVLEMINNPHY----LYRMTILRAISLL  502 (530)
Q Consensus       433 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~-----i~~~l~~~~~d~~~----~vr~~a~~~l~~i  502 (530)
                      +.+..+.....+++++++.+|..|..+...+......+... ..     ..|.....-.....    .+|.+++..++++
T Consensus       271 ~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l  350 (372)
T PF12231_consen  271 HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL  350 (372)
T ss_pred             hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence            45667888889999999999999999999998765432111 11     12332222222222    7888888888877


Q ss_pred             hh
Q 009632          503 AP  504 (530)
Q Consensus       503 ~~  504 (530)
                      .-
T Consensus       351 ly  352 (372)
T PF12231_consen  351 LY  352 (372)
T ss_pred             HH
Confidence            64

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=90.34  E-value=17  Score=34.73  Aligned_cols=408  Identities=11%  Similarity=0.056  Sum_probs=191.3

Q ss_pred             CCchHHHHHHHHHHhcccccC-CCccc-----hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh--h-----hh
Q 009632           58 DDDDEVLLAMAEELGVFIPYV-GGVEH-----AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--L-----VD  124 (530)
Q Consensus        58 d~~~~vr~~~~~~l~~~~~~~-~~~~~-----~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~-----~~  124 (530)
                      ..+..|+...+.|+...++.- ....|     ....+..|.+.-++++..|-...+++|++++-......  +     .+
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            345567888888887665410 00112     24456667777778889999999999999998655421  1     23


Q ss_pred             hHHHHHHHHhcCCccchhHHHHhHhhhhcCCC--ChHHHHH-----HHHHHHhhcC--CCChhHHHHHHHHHHHHHhhh-
Q 009632          125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSA--PDILKTE-----LRSIYTQLCQ--DDMPMVRRSAASNLGKFAATV-  194 (530)
Q Consensus       125 ~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~--~~~~~~~-----l~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~-  194 (530)
                      .++..+...+..+++.........++.+...+  +++.+.+     +++.+.....  -.+....+...-.+.++.+.. 
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            35666666665555443333222233322221  1222222     3333332221  111122222222222222211 


Q ss_pred             ---cchhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcC------chhhhhccHHHHHHhcCCCCHHHHHHHHHH
Q 009632          195 ---EPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQ  264 (530)
Q Consensus       195 ---~~~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~  264 (530)
                         .+-.....+.-.+.+++. .-++.++....+.+...++.--      +......++..+.+.-.+.+..--....+.
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~  292 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR  292 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence               111111112222222222 1234566666666665554311      111122233333332222221111222222


Q ss_pred             HHHHHHH--hCCcc-----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC------HHHHHhhhhHhHhH-hccC
Q 009632          265 LYELCEA--VGPEP-----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN------PELAIQHILPCVKE-LSSD  330 (530)
Q Consensus       265 l~~l~~~--~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~------~~~~~~~l~~~l~~-~~~d  330 (530)
                      ...+.-.  .|++.     ..++++..+...+..++.+....+.-+++.|++.-.      .+.+.+.++..+.+ -..|
T Consensus       293 ~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd  372 (604)
T KOG4500|consen  293 IAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD  372 (604)
T ss_pred             hhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            2222221  23332     233477888888888888888899999998877432      23445666666644 3446


Q ss_pred             CcHHHHHHHHHHHHhhcc-ccCHHHH-HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--hhHH--HhhHHHHHHH
Q 009632          331 SSQHVRSALASVIMGMAP-LLGKDAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLL--SQSLLPAIVE  404 (530)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~-~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~~  404 (530)
                      .+-++..+++.++..+.- ...+..+ ...+...++..++-..+.|.-.-..++.-+...-.  ..+.  .+.++..+..
T Consensus       373 gnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~  452 (604)
T KOG4500|consen  373 GNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD  452 (604)
T ss_pred             ccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH
Confidence            677777888888877642 2222222 22334445555555555554444443333221100  0001  1456777777


Q ss_pred             HhcCCChH-HHHHHHHHHHHHHhhhChhhH-----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632          405 LAEDRHWR-VRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       405 ~~~~~~~~-~R~~~~~~l~~l~~~~~~~~~-----~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  465 (530)
                      ..+++++. +--..-..+..+.+...-+.+     ....+......+...+-.....|+-++..+..
T Consensus       453 Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~  519 (604)
T KOG4500|consen  453 WSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES  519 (604)
T ss_pred             hhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence            77777654 433344444444332110000     01123334444445555566666666665543

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=90.11  E-value=0.59  Score=28.33  Aligned_cols=23  Identities=35%  Similarity=0.326  Sum_probs=11.8

Q ss_pred             HHHHHHHHhhcCCchhHHHHHHH
Q 009632          202 DIMSIFEDLTQDDQDSVRLLAVE  224 (530)
Q Consensus       202 ~l~~~l~~~~~d~~~~vr~~a~~  224 (530)
                      .+...+...+.|+++.||.+|++
T Consensus        18 ~v~~~i~~rl~D~s~~VR~aav~   40 (42)
T PF12765_consen   18 DVQSAIIRRLSDSSPSVREAAVD   40 (42)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHH
Confidence            44444555555555555555544

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=90.01  E-value=7.7  Score=30.22  Aligned_cols=71  Identities=15%  Similarity=0.089  Sum_probs=43.6

Q ss_pred             HhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhChh-hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          395 SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       395 ~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                      ...++|.+.+.++ ......|.++...++.++....-. ...+.++..+.+.......  ...++-++..+++..
T Consensus         4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence            3567888888777 666788888888888888765522 1222333333333322222  466777788777665

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.98  E-value=29  Score=36.88  Aligned_cols=89  Identities=16%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC---hhHH--hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC---h
Q 009632          437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---S  508 (530)
Q Consensus       437 ~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~---~  508 (530)
                      ++....++++++...+|..++.++..-..-+.   +...  .....|.+...+.+.|+.+-..|++++..++...|   .
T Consensus       804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~  883 (1014)
T KOG4524|consen  804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA  883 (1014)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence            45555667788888888888888765443332   1111  13456666677889999999999999999998877   3


Q ss_pred             HHHHhhHHHHHHhhccC
Q 009632          509 EITCSRLLPVVINASKD  525 (530)
Q Consensus       509 ~~~~~~~~p~l~~~l~D  525 (530)
                      ..+.+.++|.+..++.|
T Consensus       884 sR~l~dvlP~l~~~~~~  900 (1014)
T KOG4524|consen  884 SRFLEDVLPWLKHLCQD  900 (1014)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56788889988877665

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=89.94  E-value=9  Score=30.87  Aligned_cols=109  Identities=11%  Similarity=0.009  Sum_probs=68.6

Q ss_pred             CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh----hhhccHHHHHH
Q 009632          173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVN  248 (530)
Q Consensus       173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~  248 (530)
                      .+++|..-...|..+..      .+.-..+.+..+.+.+.+.++.+...|+..+..+.+.+|..-    ....++..+..
T Consensus        18 ~~~dw~~ileicD~In~------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~   91 (142)
T cd03569          18 GEPDLASILEICDMIRS------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD   91 (142)
T ss_pred             CccCHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence            34566554444444432      111234566777788888888999999999999998888631    12335555555


Q ss_pred             hcC-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 009632          249 FSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR  287 (530)
Q Consensus       249 ~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  287 (530)
                      +++ ..+..||..+...+...+..++.+.....+...+..
T Consensus        92 l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~  131 (142)
T cd03569          92 LIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQI  131 (142)
T ss_pred             HHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence            554 456778888888888888777655433444444433

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=89.92  E-value=6.2  Score=29.97  Aligned_cols=61  Identities=15%  Similarity=0.134  Sum_probs=33.0

Q ss_pred             CcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632          448 KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (530)
Q Consensus       448 ~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~  510 (530)
                      ....-|..++++++.+.+..|+...  ..+++.+|...+..+  +.|..+++++..++..++.++
T Consensus        27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~   89 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED   89 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence            4445667777777777763332211  122333333333333  667777777777777776654

; GO: 0004674 protein serine/threonine kinase activity

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.74  E-value=16  Score=33.34  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=64.4

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHHHhhhcchh---hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhhhhcc
Q 009632          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHI  242 (530)
Q Consensus       167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~  242 (530)
                      -+..++.+.+|.||+.|+..+..+... +-..   .....++.+.+++.|..+  -.-|+.++.+++..-+- +.....+
T Consensus         7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~   83 (353)
T KOG2973|consen    7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDL   83 (353)
T ss_pred             HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHH
Confidence            445678899999999999888887765 3222   223467778888888776  33455666666654321 2223335


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632          243 LPVIVNFSQDKSWRVRYMVANQLYELCE  270 (530)
Q Consensus       243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~  270 (530)
                      +..+...+.|+.|..-...|..+.++++
T Consensus        84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~  111 (353)
T KOG2973|consen   84 LKVLMDMLTDPQSPLADLICMLLSNLSR  111 (353)
T ss_pred             HHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence            5555556667766666667777766654

>PF05536 Neurochondrin: Neurochondrin

Probab=89.69  E-value=26  Score=35.74  Aligned_cols=226  Identities=17%  Similarity=0.094  Sum_probs=130.2

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhCh-----Hhhhhcc----ccccccc--c--CCchHH-HHHHHHHHhccc
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGE-----ERTRKEL----IPFLSEN--N--DDDDEV-LLAMAEELGVFI   75 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~-----~~~~~~l----~~~l~~~--~--d~~~~v-r~~~~~~l~~~~   75 (530)
                      .+..-+.-|++.+...|..++-.+.++...-+.     ..+++.+    +..|...  .  +.++.. +..+...|..|.
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            356667778888888999999888887653221     1122222    2222221  1  113333 333333445554


Q ss_pred             cc--CCCccchhcchhHHHhhhcccch-HHHHHHHHHHHHHHhhcCh-hh-hhhhHHHHHHHHhcCCccchhHHHHhHhh
Q 009632           76 PY--VGGVEHAHVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMRE-SD-LVDWYIPLVKRLAAGEWFTARVSACGLFH  150 (530)
Q Consensus        76 ~~--~~~~~~~~~l~~~l~~l~~d~~~-~vR~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~l~~~~~~~~r~~~~~~l~  150 (530)
                      .-  +.........+|.|...+...+. .+-..+..+|..++..-.. +. .....++.+.+...+ .......+..++.
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~  164 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL  164 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence            31  11122234456777777766555 8888999999999854322 11 222344555555444 4455666666666


Q ss_pred             hhcCCCChH-------HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--------hhhHHHHHHHHHHhhcCC-
Q 009632          151 IAYPSAPDI-------LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--------AHLKTDIMSIFEDLTQDD-  214 (530)
Q Consensus       151 ~l~~~~~~~-------~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~~~~d~-  214 (530)
                      .+....+.+       ....+++.+..........-|-.++..|+.+....+.        +...+.+...+..+++.. 
T Consensus       165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~  244 (543)
T PF05536_consen  165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL  244 (543)
T ss_pred             HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence            655444422       2344556666666566667777888888888776631        234455666666666554 


Q ss_pred             chhHHHHHHHHHHHHhhhcCch
Q 009632          215 QDSVRLLAVEGCAALGKLLEPQ  236 (530)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~  236 (530)
                      .+.-|..++.....+.+..|.+
T Consensus       245 ~~~~R~~al~Laa~Ll~~~G~~  266 (543)
T PF05536_consen  245 TPSQRDPALNLAASLLDLLGPE  266 (543)
T ss_pred             CHHHHHHHHHHHHHHHHHhChH
Confidence            5667888888888888877753

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=89.65  E-value=35  Score=38.38  Aligned_cols=300  Identities=11%  Similarity=0.083  Sum_probs=141.7

Q ss_pred             cccccccc---ccC-CchHHHHHHHHHHhcccccCCCcc---chhcchhHHHhh----------h-----cccchHHHHH
Q 009632           48 ELIPFLSE---NND-DDDEVLLAMAEELGVFIPYVGGVE---HAHVLLPPLETL----------C-----TVEETCVRDK  105 (530)
Q Consensus        48 ~l~~~l~~---~~d-~~~~vr~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~l----------~-----~d~~~~vR~~  105 (530)
                      ..+|++.+   ..| ++.+.|+.+..+|.+++..-.+..   ....++.+|.++          +     .-....+++.
T Consensus       235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~  314 (2195)
T KOG2122|consen  235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQ  314 (2195)
T ss_pred             cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchh
Confidence            45666655   233 367899999999999887432211   123455554421          1     1124556676


Q ss_pred             HHHHHHHHHhhcChhhhhhh-----HHHHHHHHh-----------cCC-ccchhHHHHhHhhhhcCC--CChH---HHHH
Q 009632          106 AVESLCRIGSQMRESDLVDW-----YIPLVKRLA-----------AGE-WFTARVSACGLFHIAYPS--APDI---LKTE  163 (530)
Q Consensus       106 a~~~l~~l~~~~~~~~~~~~-----l~~~l~~l~-----------~~~-~~~~r~~~~~~l~~l~~~--~~~~---~~~~  163 (530)
                      .+.++..+++.-.++.....     .+..+-+|+           ++. ....|.++...+..+...  ..+.   -...
T Consensus       315 lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  315 LCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            66777777775443322111     112222221           111 234566666666554321  1111   2234


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHH---HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--  236 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~---~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--  236 (530)
                      ++..+..-+.....++.+..+..|.++.=+...  .....   .+..+..-.+....+..-++.+.+|.+++.++...  
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA  474 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA  474 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence            444444433333334444444444444322111  01111   11122222233333344445555666666555432  


Q ss_pred             hh--hhccHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCCcc-c-----ccchHHHHHHhcCCCcHHHHHHHHHHH
Q 009632          237 DC--VAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPEP-T-----RMDLVPAYVRLLRDNEAEVRIAAAGKV  304 (530)
Q Consensus       237 ~~--~~~~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~~-~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l  304 (530)
                      .+  .+..+-+|..++.-    +.-.+-..+...|.++...+.... +     ....+..+++.|+..+-.|..+++.+|
T Consensus       475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL  554 (2195)
T KOG2122|consen  475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL  554 (2195)
T ss_pred             hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence            11  22344444444332    222333344444444444433211 1     124667777777777666666666666


Q ss_pred             HHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632          305 TKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (530)
Q Consensus       305 ~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~  347 (530)
                      -.+......+   .|...-++.+.+++.+++..+-...+.++-.+.
T Consensus       555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl  600 (2195)
T KOG2122|consen  555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL  600 (2195)
T ss_pred             hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            5554433222   233445777788888877777666666665543

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=89.60  E-value=18  Score=34.00  Aligned_cols=68  Identities=13%  Similarity=0.217  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632          256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (530)
Q Consensus       256 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~  329 (530)
                      .-++.+.+.|+.+-..++.-.  ...+...+.++.|.+-.||..|++.|+.+|+.    +....+.+.+.++++
T Consensus        39 k~k~lasq~ip~~fk~fp~la--~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn  106 (460)
T KOG2213|consen   39 KEKRLASQFIPRFFKHFPSLA--DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN  106 (460)
T ss_pred             HHHHHHHHHHHHHHhhCchhh--hHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence            345566666666666554322  23455566777888888888888888888875    233455555555554

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.49  E-value=9.3  Score=30.40  Aligned_cols=97  Identities=12%  Similarity=0.043  Sum_probs=61.3

Q ss_pred             CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh---hh-hccHHHHHH
Q 009632          173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CV-AHILPVIVN  248 (530)
Q Consensus       173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~-~~~~~~l~~  248 (530)
                      .+++|..-...+..+..-      +.-....+..+.+.+.++++.++..|+..+..+.+.+|+.-   +. ..++..+..
T Consensus        14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~   87 (133)
T cd03561          14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK   87 (133)
T ss_pred             CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence            345665555444444322      12234567777788888888899999999999888887621   11 123333445


Q ss_pred             hcCC---CCHHHHHHHHHHHHHHHHHhCCc
Q 009632          249 FSQD---KSWRVRYMVANQLYELCEAVGPE  275 (530)
Q Consensus       249 ~~~d---~~~~vr~~~~~~l~~l~~~~~~~  275 (530)
                      ++..   .+..||..+...+......++..
T Consensus        88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~  117 (133)
T cd03561          88 IAKNSPKYDPKVREKALELILAWSESFGGH  117 (133)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5443   46678888888888887777654

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=89.40  E-value=3.6  Score=36.90  Aligned_cols=74  Identities=15%  Similarity=0.147  Sum_probs=46.2

Q ss_pred             HHHHHhHHHHHHHhhc------CC----ChHHHHHHHHhhHHhhhhhchhHH--HhhHHHHHHHHhcC--CChHHHHHHH
Q 009632          353 DATIEQLLPIFLSLLK------DE----FPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAED--RHWRVRLAII  418 (530)
Q Consensus       353 ~~~~~~l~~~l~~~l~------d~----~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~~--~~~~~R~~~~  418 (530)
                      +.+..+++|.++.++-      ++    ...+|..|+..++.++..++....  .+.+...+.+..-|  +.+.....|+
T Consensus       272 dPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGal  351 (450)
T COG5095         272 DPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGAL  351 (450)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhh
Confidence            4556677777776652      22    246999999999999998886532  23333333333222  3466677778


Q ss_pred             HHHHHHHh
Q 009632          419 EYIPLLAS  426 (530)
Q Consensus       419 ~~l~~l~~  426 (530)
                      ..++.+.+
T Consensus       352 kgls~l~k  359 (450)
T COG5095         352 KGLSILSK  359 (450)
T ss_pred             hhhhhhch
Confidence            77777654

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=88.84  E-value=14  Score=31.67  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=34.1

Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009632          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA  271 (530)
Q Consensus       205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  271 (530)
                      +.+.....+++.-+|..+...+......   +...+.+++.+..+..|++..||.+++.+|..++..
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            4555556666655555555554443332   122344555555555555566666666666555543

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=88.82  E-value=32  Score=35.64  Aligned_cols=262  Identities=14%  Similarity=0.130  Sum_probs=132.1

Q ss_pred             hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHh
Q 009632          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ  318 (530)
Q Consensus       239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  318 (530)
                      +..++..+..+..|+=..|+..++.++..+...-++  ....++..+++-+.|+...+...|...|..+...-+.-  ..
T Consensus       302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM--K~  377 (988)
T KOG2038|consen  302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM--KI  377 (988)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc--ee
Confidence            455788888889999899999998888887654222  23468888999999999888888888887776543321  11


Q ss_pred             hhhHhHhHhcc--CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc--------C------------------C
Q 009632          319 HILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK--------D------------------E  370 (530)
Q Consensus       319 ~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------d------------------~  370 (530)
                      .++..+..++-  +.+.+....++..+..+.-.-........++.+.+.+++        |                  .
T Consensus       378 Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k  457 (988)
T KOG2038|consen  378 VVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDK  457 (988)
T ss_pred             ehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccch
Confidence            22333333322  222333334444444433222223333444444333321        1                  0


Q ss_pred             ChHHHHHHHH-----hhHHhh----hhhc----hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHH
Q 009632          371 FPDVRLNIIS-----KLDQVN----QVIG----IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  437 (530)
Q Consensus       371 ~~~vr~~a~~-----~l~~l~----~~~~----~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~  437 (530)
                      ...++..+..     .|..+.    ..+.    ++.....-++.|..+..+.|+.+-..++..|-++...  .++..+.+
T Consensus       458 ~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~--~~~vSDRy  535 (988)
T KOG2038|consen  458 KEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFKLTHSSNFNTSVQALMLLFQVSKK--NDYVSDRY  535 (988)
T ss_pred             hhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHHHHhhcccchhHHHHHHHHHHHHh--hhhhHHHH
Confidence            1112211111     111111    1111    1222345567777888888888777777777666542  22233333


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhh---hhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632          438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ---HITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (530)
Q Consensus       438 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~---~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~  506 (530)
                      -..+..-|-||...--......|+-++..+..+...+   .++..+++..--..+..-.+++..+..+...-
T Consensus       536 Y~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Kar  607 (988)
T KOG2038|consen  536 YRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDINIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKAR  607 (988)
T ss_pred             HHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHhc
Confidence            3344444445433223333444455555554332222   22333333322334444455555555555443

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=88.71  E-value=4.7  Score=33.36  Aligned_cols=76  Identities=14%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh--hhhccHHHHHHhc
Q 009632          174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNFS  250 (530)
Q Consensus       174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~  250 (530)
                      |..-++|++|.+++..+...+........+++.+...+.| +..||..+...+..++...+...  ..+.+.+.+...+
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L  115 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL  115 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence            6678999999999999999877766677788999999999 88999999999999877655421  2334555554443

; PDB: 4A0C_A 1U6G_C.

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=88.41  E-value=4.4  Score=30.69  Aligned_cols=71  Identities=15%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             HHHHHhhcCCCC----hhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh
Q 009632          165 RSIYTQLCQDDM----PMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD  237 (530)
Q Consensus       165 ~~~l~~l~~d~~----~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~  237 (530)
                      +..+...+.|.+    ..-|+.+..+++.+.+..++.  .+.+++..-+...+.  .++.|..|++++..+...+++++
T Consensus        13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~   89 (107)
T smart00802       13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE   89 (107)
T ss_pred             HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence            344444455554    345899999999999976652  334455555665565  45699999999999999988754

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.39  E-value=32  Score=35.19  Aligned_cols=107  Identities=12%  Similarity=0.048  Sum_probs=82.9

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh--------hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-  235 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-  235 (530)
                      +..+.+++++++...|-+.+++++++...+.++.        -...++..+.+.+.|.++-+|..|++.+..+...-.+ 
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~  380 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT  380 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence            3556678889999999999999999987765532        2345788888999999999999999999988876443 


Q ss_pred             hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009632          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA  271 (530)
Q Consensus       236 ~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  271 (530)
                      ......+...+...++|.+..||+.+.+.+..+...
T Consensus       381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~  416 (1128)
T COG5098         381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR  416 (1128)
T ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence            112345777777888899999999998888776543

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=88.13  E-value=12  Score=29.83  Aligned_cols=71  Identities=10%  Similarity=0.069  Sum_probs=40.3

Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhhhc
Q 009632          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLL  233 (530)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d~~~--~vr~~a~~~l~~l~~~~  233 (530)
                      +.+..+.+-+.++++.+...|+..+..+.+++|...    ....++..+..++.+...  .||..+++.+...+..+
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            344445555556777777777777777777766532    223355555555554322  26666666555555544

Unpublished observations. Domain of unknown function.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=87.79  E-value=7.5  Score=30.91  Aligned_cols=74  Identities=15%  Similarity=0.165  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHhhccCC-ChH-HHHHHHHHHHHHhhhcCh
Q 009632          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLEMINNP-HYL-YRMTILRAISLLAPVMGS  508 (530)
Q Consensus       435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d~-~~~-vr~~a~~~l~~i~~~~~~  508 (530)
                      ...+..+.+-+..+++.|...|+..+..+++.+|..+..    ..++..|.+++.++ +.. ||..++..+..+...+..
T Consensus        36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~  115 (133)
T smart00288       36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN  115 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence            345666777788889999999999999999998876543    55777777777664 323 899999999998887754

Unpublished observations. Domain of unknown function.

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=87.76  E-value=5.9  Score=28.61  Aligned_cols=68  Identities=6%  Similarity=0.025  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHhChhHHh--hhhHHHHHhhccCCChHHHHHHHHHHH
Q 009632          433 FDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEMINNPHYLYRMTILRAIS  500 (530)
Q Consensus       433 ~~~~~~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~vr~~a~~~l~  500 (530)
                      |...++..+... ...++.+||+..+.|+..+....|.....  ..++..+.....|.+..+-..|.+++.
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            444455555555 34567788888888888888876644211  456666666677777777666666654

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=87.08  E-value=27  Score=32.81  Aligned_cols=136  Identities=11%  Similarity=0.156  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHhhccccC-HHHHHHhHHHHHHH-hhcC---CChHHHHH-HHHhhHHhhhhhchh------HHHhhHHHH
Q 009632          334 HVRSALASVIMGMAPLLG-KDATIEQLLPIFLS-LLKD---EFPDVRLN-IISKLDQVNQVIGID------LLSQSLLPA  401 (530)
Q Consensus       334 ~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l~d---~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~l~~~  401 (530)
                      .+|..++..+..+..... .+.....++|.+.. .|.|   ..+..|.. ++..+..++..++..      .+.+.++..
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~  121 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC  121 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            466777777777766554 23344455555444 4433   34444432 344555555555431      223444445


Q ss_pred             HHHHhcCC---ChHHHHHHHHHHHHHHhhhChhh------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632          402 IVELAEDR---HWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (530)
Q Consensus       402 l~~~~~~~---~~~~R~~~~~~l~~l~~~~~~~~------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  469 (530)
                      ...+..+.   -+..|......+..+...+-...      ....++..+.-.++++..+|...++.++..+...+..
T Consensus       122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            55555442   47899999999988887643222      1234677778888999999999999999999987755

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=86.67  E-value=11  Score=28.50  Aligned_cols=58  Identities=16%  Similarity=0.155  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632          451 SIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (530)
Q Consensus       451 ~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~  510 (530)
                      .-|..++.+++.+.+..|+...  ..++..+|...+.  ..+.|..+++++..+...++.++
T Consensus        30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~   89 (107)
T smart00802       30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE   89 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence            4588888888888886664421  1334444444444  44588888888888888887654

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=86.45  E-value=26  Score=35.12  Aligned_cols=142  Identities=18%  Similarity=0.134  Sum_probs=88.7

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh----hh
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CV  239 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~  239 (530)
                      +...+..-..|-++.+|-.+...++..+...|.-.+.-..+...-=.+.|.+..||....+.+..++...+...    +.
T Consensus       276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~  355 (740)
T COG5537         276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV  355 (740)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            33455566779999999999999999888765533222233333335789999999999999999998876533    22


Q ss_pred             hccHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632          240 AHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (530)
Q Consensus       240 ~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  309 (530)
                      +.+...+.+. ..|.+- ||-...+.+..+... |--  ...-+-.+..++-|..|+-|+.-.+.+..+++
T Consensus       356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l-g~L--~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK  422 (740)
T COG5537         356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL-GVL--SSSEILIVSSCMLDIIPDSRENIVESVESICK  422 (740)
T ss_pred             HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh-ccc--chhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            3333333333 345555 999998888777653 111  12223444555667666655554444444444

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.28  E-value=41  Score=34.12  Aligned_cols=52  Identities=8%  Similarity=0.079  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632          337 SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       337 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  388 (530)
                      ..+.++...+....+...+.+.++..+...++|....++..++.++..+...
T Consensus       303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~  354 (704)
T KOG2153|consen  303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN  354 (704)
T ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence            3455555666655555667888999999999999999999999999888654

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=86.02  E-value=2.3  Score=35.13  Aligned_cols=57  Identities=18%  Similarity=-0.014  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       410 ~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                      .-.+|.+|.+++.++...+....-...++..+..++.| ...||.-+...+..++...
T Consensus        40 GLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~   96 (169)
T PF08623_consen   40 GLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA   96 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence            45788888888888877666655556678888888888 8888888888887776543

; PDB: 4A0C_A 1U6G_C.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=86.01  E-value=14  Score=28.66  Aligned_cols=69  Identities=10%  Similarity=0.051  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-----hhhHHHHHhhcc--------CCChHHHHHHHHHHHH
Q 009632          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-----QHITPQVLEMIN--------NPHYLYRMTILRAISL  501 (530)
Q Consensus       435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~i~~~l~~~~~--------d~~~~vr~~a~~~l~~  501 (530)
                      ..++.++.+-|+++.+.|+..++++|..++...++.+..     ..++..+.+.-.        +++..||..|-+++.-
T Consensus        37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~  116 (122)
T cd03572          37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA  116 (122)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence            468888999999999999999999999988886655432     234444444322        2366799999988876


Q ss_pred             Hh
Q 009632          502 LA  503 (530)
Q Consensus       502 i~  503 (530)
                      +.
T Consensus       117 if  118 (122)
T cd03572         117 IF  118 (122)
T ss_pred             Hh
Confidence            64

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=85.86  E-value=17  Score=29.27  Aligned_cols=76  Identities=14%  Similarity=0.190  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHhhccCC-ChH---HHHHHHHHHHHHhhh
Q 009632          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLEMINNP-HYL---YRMTILRAISLLAPV  505 (530)
Q Consensus       434 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d~-~~~---vr~~a~~~l~~i~~~  505 (530)
                      ....+..+.+-+..+++.|...|+..+..+++..|..+..    ..++..+.+++.++ ...   ||..++..+..+...
T Consensus        40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~  119 (140)
T PF00790_consen   40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA  119 (140)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence            3556777888888999999999999999999999877543    55788888876543 322   899999999999888


Q ss_pred             cChH
Q 009632          506 MGSE  509 (530)
Q Consensus       506 ~~~~  509 (530)
                      ++..
T Consensus       120 f~~~  123 (140)
T PF00790_consen  120 FKSD  123 (140)
T ss_dssp             TTTS
T ss_pred             HCCC
Confidence            7543

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=85.75  E-value=9.3  Score=38.78  Aligned_cols=174  Identities=17%  Similarity=0.124  Sum_probs=92.9

Q ss_pred             CchhHHHHHHHHHHHHhhhcCc-----------hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccc----
Q 009632          214 DQDSVRLLAVEGCAALGKLLEP-----------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR----  278 (530)
Q Consensus       214 ~~~~vr~~a~~~l~~l~~~~~~-----------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~----  278 (530)
                      ++...|..-.+++.+++..+-+           ..+.+.++..+....++.+..+|-.++..++++++.++.....    
T Consensus       208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~  287 (993)
T COG5234         208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID  287 (993)
T ss_pred             cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH
Confidence            3455666666677777665433           1234445666666677788899999999999998877643210    


Q ss_pred             --cchHHH-HHHhcC------CCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccC--------CcHHHHHHHHH
Q 009632          279 --MDLVPA-YVRLLR------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD--------SSQHVRSALAS  341 (530)
Q Consensus       279 --~~l~~~-l~~~l~------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d--------~~~~vr~~~~~  341 (530)
                        +...+. +++.++      +.++.+-..++.-++ ++...+-+...-.+.|.+.+.+.-        +...+|.+.+.
T Consensus       288 ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f  366 (993)
T COG5234         288 IIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCF  366 (993)
T ss_pred             HHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccccceeehheeeeccceeecccce
Confidence              111111 222222      233344444433333 333322222111244444333221        12256666665


Q ss_pred             HHHhhccccCH---HHHHHhHHHHHHH-hhcCCChHHHHHHHHhhHHhhhh
Q 009632          342 VIMGMAPLLGK---DATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       342 ~l~~l~~~~~~---~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~  388 (530)
                      .+..+......   +.....+...+.+ .+=|+.-.+|.+|..++-+++..
T Consensus       367 ~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR  417 (993)
T COG5234         367 FVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGR  417 (993)
T ss_pred             eeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhcc
Confidence            55554332111   1233334455555 77899999999999888777654

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=85.44  E-value=15  Score=28.30  Aligned_cols=38  Identities=16%  Similarity=0.219  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  433 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~  433 (530)
                      +.++..+.+.+.+++|.+..-++..+..+.+..|..+.
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~   73 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFH   73 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHH
Confidence            45666666666777888888888888888887776553

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=85.31  E-value=21  Score=31.89  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             hhhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh-h
Q 009632          238 CVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-L  311 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~-~  311 (530)
                      +.-++.|++....+.. -+..|.+....+|.+.+.-..+.    ....++|.+++.++-.+.-.+..|..-+..+... .
T Consensus        92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~  171 (262)
T PF04078_consen   92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDV  171 (262)
T ss_dssp             GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHH
T ss_pred             chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchh
Confidence            3455778776666553 36788888888888776322222    1346889998888777666666666666655432 1


Q ss_pred             CH-------H---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632          312 NP-------E---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (530)
Q Consensus       312 ~~-------~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  349 (530)
                      |-       +   .+...+-..+..+.+++++|.-..++++...++..
T Consensus       172 GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  172 GLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            11       1   11112222223344555555555555555555543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=84.10  E-value=41  Score=32.32  Aligned_cols=226  Identities=14%  Similarity=0.092  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhhhhccHHHH--HHhcCC-CCHHHHHHHHHHHHHHHHHh-C
Q 009632          199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVI--VNFSQD-KSWRVRYMVANQLYELCEAV-G  273 (530)
Q Consensus       199 ~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l--~~~~~d-~~~~vr~~~~~~l~~l~~~~-~  273 (530)
                      .+..+.+.+...+-+++.+||.++.+.+..+...... ..+.+.=++++  ..+..| ++..=|..|.+.+..+...- |
T Consensus        22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~  101 (371)
T PF14664_consen   22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG  101 (371)
T ss_pred             hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence            3444555555444444599999999999877654321 11122112222  123333 34567889999988888763 2


Q ss_pred             CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH
Q 009632          274 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD  353 (530)
Q Consensus       274 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  353 (530)
                      .......++..+....+++++..|..|++.+.+++-.-+.-.....-+..+.+.+.|....+-..++.++-.+...-...
T Consensus       102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR  181 (371)
T PF14664_consen  102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR  181 (371)
T ss_pred             cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence            33334567788888888999999999999999887543222222233444444444444445555555555554322111


Q ss_pred             ------HHHHhHHHHHHHh----hcCCCh-HHHHHHHHhhHHhhhhh------chhHHHhhHHHHHHHHhcCCChHHHHH
Q 009632          354 ------ATIEQLLPIFLSL----LKDEFP-DVRLNIISKLDQVNQVI------GIDLLSQSLLPAIVELAEDRHWRVRLA  416 (530)
Q Consensus       354 ------~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~------~~~~~~~~l~~~l~~~~~~~~~~~R~~  416 (530)
                            .-.+.++..+...    .+++.. +.-..+..++..+.+.-      +.+.+  .-+..+...+.-++..+|..
T Consensus       182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHH
Confidence                  1122222222222    222221 23333334444443321      11111  34555666777888889999


Q ss_pred             HHHHHHHHHh
Q 009632          417 IIEYIPLLAS  426 (530)
Q Consensus       417 ~~~~l~~l~~  426 (530)
                      .+..+-.+..
T Consensus       260 Ildll~dllr  269 (371)
T PF14664_consen  260 ILDLLFDLLR  269 (371)
T ss_pred             HHHHHHHHHC
Confidence            8888877755

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=83.80  E-value=18  Score=28.07  Aligned_cols=38  Identities=11%  Similarity=-0.012  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhc
Q 009632          158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE  195 (530)
Q Consensus       158 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~  195 (530)
                      .....++...+.+-++++++.|+..++..|..++...+
T Consensus        33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~   70 (122)
T cd03572          33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN   70 (122)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence            34567888888888889999999999999999887654

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=83.72  E-value=9.8  Score=27.49  Aligned_cols=68  Identities=13%  Similarity=0.114  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhh-cCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 009632          160 LKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCA  227 (530)
Q Consensus       160 ~~~~l~~~l~~l-~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~  227 (530)
                      .++.++..+..+ .+.++..||...+.++..+....+..  .-++.++..+.....|+++.+-..|.+++.
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            556677777776 45568899999999999998876652  235667777777778777777666666553

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=83.69  E-value=21  Score=28.69  Aligned_cols=98  Identities=14%  Similarity=0.220  Sum_probs=64.1

Q ss_pred             hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHH-
Q 009632          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQ-  479 (530)
Q Consensus       406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~-  479 (530)
                      +.+++|..-...+..+..  +..|+    ...+..+.+-+. .+++.|...|+..+..+++++|..+..    ..++.. 
T Consensus        14 l~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~   87 (141)
T cd03565          14 LQSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV   87 (141)
T ss_pred             CCCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence            345577655555555532  22232    234445555555 467888888888888888888877543    456665 


Q ss_pred             HHhhccC---CChHHHHHHHHHHHHHhhhcChH
Q 009632          480 VLEMINN---PHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       480 l~~~~~d---~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      |.+++++   .+..|+..++..+..+...++.+
T Consensus        88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (141)
T cd03565          88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRGS  120 (141)
T ss_pred             HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            6776653   34588999999999888877644

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=83.34  E-value=22  Score=28.53  Aligned_cols=72  Identities=11%  Similarity=-0.029  Sum_probs=48.8

Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHHhhcC------CchhHHHHHHHHHHHHhhh
Q 009632          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD------DQDSVRLLAVEGCAALGKL  232 (530)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d------~~~~vr~~a~~~l~~l~~~  232 (530)
                      +.+..+.+-+++.++.|...|+..|..+.+++|...    ....++.-+.+++.+      ....|+...++.+...+..
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE  117 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            344445566678888888888888888888888732    234455666666643      3567888877777776665


Q ss_pred             cC
Q 009632          233 LE  234 (530)
Q Consensus       233 ~~  234 (530)
                      ++
T Consensus       118 f~  119 (139)
T cd03567         118 LP  119 (139)
T ss_pred             hc
Confidence            54

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal

Probab=82.31  E-value=47  Score=31.67  Aligned_cols=89  Identities=12%  Similarity=0.141  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHhC---hhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChH
Q 009632          435 DKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       435 ~~~~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      +.+.|.+++++  -++.+.+|..+...+..+.....   .....+.+.+.+..+..+--...-....+.+..++..-  .
T Consensus       255 ~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~--p  332 (373)
T PF14911_consen  255 RLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELD--P  332 (373)
T ss_pred             HHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhC--H
Confidence            44555555543  35578889999998888887653   11122333444443333322222222334444443321  1


Q ss_pred             HHHhhHHHHHHhhccC
Q 009632          510 ITCSRLLPVVINASKD  525 (530)
Q Consensus       510 ~~~~~~~p~l~~~l~D  525 (530)
                      .+...++|.+.+.+.|
T Consensus       333 ~lV~~Lip~i~q~l~~  348 (373)
T PF14911_consen  333 QLVISLIPTIRQSLKD  348 (373)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            2345556666555443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=81.88  E-value=40  Score=30.53  Aligned_cols=137  Identities=16%  Similarity=0.231  Sum_probs=78.6

Q ss_pred             hHHHHHHhcCCCc----HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHH-HHHHHHhhccccCHHHH
Q 009632          281 LVPAYVRLLRDNE----AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSA-LASVIMGMAPLLGKDAT  355 (530)
Q Consensus       281 l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~-~~~~l~~l~~~~~~~~~  355 (530)
                      .+|.++..+.++.    ..-...++..+..+++.-+...+ ..++..+   .+.+. +-+.. ..+.+..+.+.+.++ +
T Consensus       112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~L-a~il~~y---a~~~f-r~~~dfl~~v~~~l~~~f~P~-~  185 (262)
T PF14225_consen  112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNL-ARILSSY---AKGRF-RDKDDFLSQVVSYLREAFFPD-H  185 (262)
T ss_pred             HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccH-HHHHHHH---HhcCC-CCHHHHHHHHHHHHHHHhCch-h
Confidence            4677777777666    13334566888888866554433 2222222   23222 22222 222333344444322 2


Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh-HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 009632          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (530)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~  426 (530)
                      ..+++-++..+|.++...+|..++..+..+....... ....+++..+.++++.+.|.   .|++.+..+..
T Consensus       186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~  254 (262)
T PF14225_consen  186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWM---EALEVLDEIVT  254 (262)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHH---HHHHHHHHHHh
Confidence            3456777888888888999999999888887664322 12345677777888777775   44444444443

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=81.36  E-value=66  Score=32.71  Aligned_cols=145  Identities=12%  Similarity=0.035  Sum_probs=84.3

Q ss_pred             HhHhccCCcH--HHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhh--------cCCChHHHHHHHHhhHHhhhhhchhH
Q 009632          324 VKELSSDSSQ--HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIGIDL  393 (530)
Q Consensus       324 l~~~~~d~~~--~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~~~  393 (530)
                      +...+.+++|  .---..+.++++++.++..+.-...++.++..+|        +|+..-|-....-..|+.-..+...|
T Consensus       486 larq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw  565 (1053)
T COG5101         486 LARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHW  565 (1053)
T ss_pred             HHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHH
Confidence            3333455655  4556777788888776654322222222222222        34433333333333333333333333


Q ss_pred             -HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh----------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 009632          394 -LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----------FFDDKLGALCMQWLQDKVYSIRDAAANNLKR  462 (530)
Q Consensus       394 -~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----------~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~  462 (530)
                       +.+.++..+.+++...+..+.-.||..+-.+++.+...          .|...++..+.+.-.|-.++=.....+++|.
T Consensus       566 ~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~  645 (1053)
T COG5101         566 SFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGM  645 (1053)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhH
Confidence             33566777778888888999999999999998877543          3445566666666667666656666677777


Q ss_pred             HHHHhC
Q 009632          463 LAEEFG  468 (530)
Q Consensus       463 l~~~~~  468 (530)
                      +.+...
T Consensus       646 vIse~p  651 (1053)
T COG5101         646 VISEVP  651 (1053)
T ss_pred             HHhccc
Confidence            666543

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=80.94  E-value=23  Score=27.21  Aligned_cols=38  Identities=13%  Similarity=-0.016  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch
Q 009632          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA  197 (530)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~  197 (530)
                      ...++...+.+-+.+++|.+...++..|..+.++.++.
T Consensus        34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~   71 (115)
T cd00197          34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER   71 (115)
T ss_pred             cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence            34556667777777788999999999998888887764

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=80.45  E-value=25  Score=27.32  Aligned_cols=71  Identities=15%  Similarity=0.140  Sum_probs=39.5

Q ss_pred             hhhccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHH-HHHhcCCCcHHH-HHHHHHHHHHHHHhh
Q 009632          238 CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA-YVRLLRDNEAEV-RIAAAGKVTKFCRIL  311 (530)
Q Consensus       238 ~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~d~~~~v-r~~a~~~l~~~~~~~  311 (530)
                      +...++|.+...+. ....+.|.+++..++.++....-.   +.++.. +...+++..+.- ...++-++..+++.-
T Consensus         3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence            34557777777777 666777887777777777654321   122222 222233322222 356666677666544

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=80.07  E-value=89  Score=33.44  Aligned_cols=113  Identities=15%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHH--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh
Q 009632          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  431 (530)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~  431 (530)
                      ...+.++..+...+..++...-...+.++..+........-.  +.+-+.. ...++.--.++....+.++.++.. +++
T Consensus       437 ~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~-~~~N~~~~~~~~~~~~il~rls~~-~~~  514 (727)
T PF12726_consen  437 RISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAK-TQFNKSLGQITDLISQILERLSDF-DPS  514 (727)
T ss_pred             hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHH-HHHHHHHHHHHHHHHHHHHHHhcC-CHH
Confidence            455667777777777777766666666666554432111000  0111111 111122234556666666666654 333


Q ss_pred             hHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632          432 FFD-----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (530)
Q Consensus       432 ~~~-----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  468 (530)
                      ...     ......+..++-.+..+++.+|...++......|
T Consensus       515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~  556 (727)
T PF12726_consen  515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG  556 (727)
T ss_pred             HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence            221     2344566777788999999999999998875433

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	530
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		0.0
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		0.0
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		0.0
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		0.0
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		0.0
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		0.0
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		1e-176
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		1e-47
1m5n_S	485	Crystal Structure Of Heat Repeats (1-11) Of Importi		3e-04
1ibr_D	462	Complex Of Ran With Importin Beta Length = 462		3e-04
2qna_A	762	Crystal Structure Of Human Importin-Beta (127-876)		5e-04
1qgk_A	876	Structure Of Importin Beta Bound To The Ibb Domain		6e-04
2p8q_A	876	Crystal Structure Of Human Importin Beta Bound To T		6e-04

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/530 (59%), Positives = 402/530 (75%), Gaps = 4/530 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 535

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/530 (59%), Positives = 402/530 (75%), Gaps = 4/530 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/530 (59%), Positives = 402/530 (75%), Gaps = 4/530 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/530 (59%), Positives = 402/530 (75%), Gaps = 4/530 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 535

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  634 bits (1636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/527 (59%), Positives = 400/527 (75%), Gaps = 4/527 (0%)
Query: 8   LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
           LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLLA+
Sbjct: 1   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 68  AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
           AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   ++
Sbjct: 61  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS L
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
           G+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P + 
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307
             ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +F
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 300
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
           C  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 301 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 360
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PL
Sbjct: 361 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 420
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M
Sbjct: 421 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 480
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 481 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 527

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/527 (59%), Positives = 400/527 (75%), Gaps = 4/527 (0%)
Query: 8   LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
           LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLLA+
Sbjct: 3   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 62
Query: 68  AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
           AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   ++
Sbjct: 63  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS L
Sbjct: 123 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 182
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
           G+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P + 
Sbjct: 183 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 242
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307
             ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +F
Sbjct: 243 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 302
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
           C  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 303 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 362
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PL
Sbjct: 363 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 422
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M
Sbjct: 423 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 482
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
             +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 483 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 529

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  613 bits (1581), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 310/529 (58%), Positives = 389/529 (73%), Gaps = 4/529 (0%)
Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
           + LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLL
Sbjct: 1   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
           A+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   
Sbjct: 61  ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS 185
           ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD P VRR+AAS
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 186 NLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245
            LG+FA  +E  ++K++I+  F +L  D+QDSVRLLAVE C  + +LL  +D  A + P 
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPT 240
Query: 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
           +   ++DKSWRVRY VA++  EL +AVGPE T+ DLVPA+  L +D EAEVR AA+ KV 
Sbjct: 241 LRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300
Query: 306 KFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361
           +FC  L+ +    +    ILPC+KEL SD++QHV+SALASVI G++P+LGKD TIE LLP
Sbjct: 301 EFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLP 360
Query: 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421
           +FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY 
Sbjct: 361 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYX 420
Query: 422 PLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481
           PLLA QLGV FFD+KL +LC  WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL
Sbjct: 421 PLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
               +P+YL+R T L  I++L+ V G +IT    LP V+  + D   N+
Sbjct: 481 AXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANV 529

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score =  187 bits (475), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 122/171 (71%)
Query: 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419
           + + +  L++E   +RLN I KL  +   +G++ LSQSLLPAIVELAED  WRVRLAIIE
Sbjct: 9   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 420 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479
           Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+
Sbjct: 69  YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530
           VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N+
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 179

>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
           DI +  L+ I  ++ +C ++M + +  S A+  G+        + K  +  +   LTQ  
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
               ++        C A G  L         D V H+LP I    ++  W  RY  A  +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 266 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
              C   GPEP+++       +P  + L++D    VR  AA  V + C +L PE AI  +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
           DI +  L+ I  ++ +C ++M + +  S A+  G+        + K  +  +   LTQ  
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
               ++        C A G  L         D V H+LP I    ++  W  RY  A  +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 266 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
              C   GPEP+++       +P  + L++D    VR  AA  V + C +L PE AI  +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
               VR  AA  V + C +L PE AI  +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322

>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	530
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-176
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-67
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-21
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	1e-18
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	7e-16
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	1e-17
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	4e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-04
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-16
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-15
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-15
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-13
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	8e-13
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	7e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-08
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	1e-07
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-07
1qgr_A	876	Protein (importin beta subunit); transport recepto	6e-07
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	1e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-04
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	6e-06
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	6e-04
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-04
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	2e-05
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	1e-04
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	4e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-04
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  509 bits (1311), Expect = e-176
 Identities = 318/532 (59%), Positives = 401/532 (75%), Gaps = 4/532 (0%)

Query: 2   AMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD 61
           A  D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+D
Sbjct: 3   ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED 62

Query: 62  EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD 121
           EVLLA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SD
Sbjct: 63  EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

Query: 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
           L   ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR 182

Query: 182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241
           +AAS LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A 
Sbjct: 183 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242

Query: 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           ++P +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302

Query: 302 GKVTKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357
            KV +FC  L+ +      +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362

Query: 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI 417
            LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAI
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422

Query: 418 IEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 477
           IEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I 
Sbjct: 423 IEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII 482

Query: 478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLN 529
           P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVAN 534

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  227 bits (579), Expect = 2e-67
 Identities = 96/503 (19%), Positives = 191/503 (37%), Gaps = 7/503 (1%)

Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
             L P   L      ++  +R  ++  L  I+            +P +      D     
Sbjct: 86  HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
             A  L               L      LC+ +   VR  A   L      +   ++   
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 126 YIPLVKRLAAGEWFTARVSACG-LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            IP+   LA+ E  + R+ A     +IA     + L+  +     Q  +D    VR   A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG----CAALGKLLEPQDCVA 240
               +    V P   KTD++  F++L +D +  VR  A       C  L         ++
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            ILP I     D +  V+  +A+ +  L   +G + T   L+P ++  L+D   EVR+  
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +     ++      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
            + ++ L D    +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           I +L+   G       +    ++   D V ++R   A +L+++            + P +
Sbjct: 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563

Query: 481 LEMINNPHYLYRMTILRAISLLA 503
            ++  +     +     A+++L+
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 96.2 bits (239), Expect = 3e-21
 Identities = 37/263 (14%), Positives = 89/263 (33%), Gaps = 2/263 (0%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAE 69
           +  + + + + +  ++      +  ++  LG++ T + L+P       D+  EV L +  
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIIS 385

Query: 70  ELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPL 129
            L      +G  + +  LLP +  L    +  VR   +E +  +  Q+      +    L
Sbjct: 386 NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445

Query: 130 VKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLG 188
                    +  R +A      +      +     +      +  D   + R +    + 
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 189 KFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248
             +           ++     +  D   +VR    +    +G +L+     + + P++  
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565

Query: 249 FSQDKSWRVRYMVANQLYELCEA 271
            +QD+   V+Y     L  L  A
Sbjct: 566 LTQDQDVDVKYFAQEALTVLSLA 588

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 84.2 bits (208), Expect = 1e-18
 Identities = 48/262 (18%), Positives = 80/262 (30%), Gaps = 85/262 (32%)

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
                D     R +AV                   +  +    +D    VR  VA +L  
Sbjct: 56  VQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRL-- 98

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327
                  E            L+ D + EVRI  A ++                L  ++++
Sbjct: 99  -----PRE--------QLSALMFDEDREVRITVADRLP---------------LEQLEQM 130

Query: 328 SSDSSQHVRSALASVI-MGMAPLLGKD-------ATIEQL-LPIFLSLLKDEFPDVRLNI 378
           ++D    VR+ +   I  G      +D          ++L       + +D  P+VR  +
Sbjct: 131 AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIV 190

Query: 379 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438
            S+L                   ++EL  D  W VRLA +E+  L A +           
Sbjct: 191 ASRLRG---------------DDLLELLHDPDWTVRLAAVEHASLEALRE---------- 225

Query: 439 ALCMQWLQDKVYSIRDAAANNL 460
                 L +    +R A A  L
Sbjct: 226 ------LDEPDPEVRLAIAGRL 241

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 76.5 bits (188), Expect = 7e-16
 Identities = 50/301 (16%), Positives = 81/301 (26%), Gaps = 93/301 (30%)

Query: 92  ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 151
              CT  + CV  ++   + R                L  +  A  ++  R  A      
Sbjct: 26  TGRCTPGDACVAVESGRQIDR---------FFRNNPHLAVQYLADPFWERRAIA------ 70

Query: 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211
              S  + L          L +D   +VRR+ A  L +                    L 
Sbjct: 71  VRYSPVEALT--------PLIRDSDEVVRRAVAYRLPR---------------EQLSALM 107

Query: 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA-----NQLY 266
            D+   VR+   +                  L  +   + D+ + VR  V       +L+
Sbjct: 108 FDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLF 152

Query: 267 ELC----EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 322
                    V     +     +   + +D E EVR   A ++                  
Sbjct: 153 RFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG---------------D 197

Query: 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382
            + EL  D    VR A                  E      L  L +  P+VRL I  +L
Sbjct: 198 DLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRL 241

Query: 383 D 383
            
Sbjct: 242 G 242

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 81.6 bits (201), Expect = 1e-17
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 13/218 (5%)

Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLL 289
           LL+P D ++ +     +  ++K W +R      L +L              LV A  +++
Sbjct: 6   LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI 65

Query: 290 -RDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGM 346
            +D+   +   A   +    + L    +      +P + E   +   +V +AL   I  +
Sbjct: 66  TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI 125

Query: 347 APLLGKDATIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGIDLLSQSLLPAI 402
                   ++E      +  L ++ P V+      I++ L +         L + L  ++
Sbjct: 126 Y----ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181

Query: 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440
           V+   +    VR +  E +  L   +G       L  +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 53.1 bits (127), Expect = 4e-08
 Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 19/194 (9%)

Query: 194 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-----PQDCVAHILPVIVN 248
           ++P  + + +   F D  ++ + ++R  ++E    L KLL             ++  +  
Sbjct: 7   LDPVDILSKMPKDFYDKLEEKKWTLRKESLE---VLEKLLTDHPKLENGEYGALVSALKK 63

Query: 249 -FSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
             ++D +  +  M    L  L + +           VP+ +   ++ +  V  A    + 
Sbjct: 64  VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123

Query: 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLP 361
                 + E   + I+  +     + +  V+S  A  I          A     ++ L  
Sbjct: 124 AIYASTSLEAQQESIVESLS----NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179

Query: 362 IFLSLLKDEFPDVR 375
             +  L +  P VR
Sbjct: 180 SLVKTLNEPDPTVR 193

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 23/199 (11%), Positives = 59/199 (29%), Gaps = 17/199 (8%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSE--NNDDDDEVLLAMAE 69
             D+L+     LR  S+  L  +     +        L+  L +    D +  ++    +
Sbjct: 20  FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGK 79

Query: 70  ELGVFIPYVGGV--EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
            L +    +      +A   +P L      ++  V     E++  I +        +  +
Sbjct: 80  CLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIV 139

Query: 128 PLVK------RLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
             +       +     +    ++      +       +  + +     +   +  P VR 
Sbjct: 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-----KTLNEPDPTVRD 194

Query: 182 SAASNLGKFAATVEPAHLK 200
           S+A  LG     +    + 
Sbjct: 195 SSAEALGTLIKLMGDKAVT 213

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 77.9 bits (192), Expect = 3e-16
 Identities = 54/321 (16%), Positives = 104/321 (32%), Gaps = 54/321 (16%)

Query: 102 VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161
            + KA +          +    D    L + L          SA  L       A  +  
Sbjct: 6   QKRKASKEYGLYNQ--CKKLNDD---ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAI 60

Query: 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-VRL 220
                   + C D   + R   A  LG+          + ++ +I  ++  +D+ + VR 
Sbjct: 61  --------EFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVFNILNNMALNDKSACVRA 109

Query: 221 LAVEGCAALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 279
            A+E   +  +  +        I+      + DKS  VR   A  +  + +         
Sbjct: 110 TAIE---STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-------- 158

Query: 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 339
             +P  + LL+D   +VR  AA  +    +  N +     I  C  E+  D ++ VR   
Sbjct: 159 ATIPLLINLLKDPNGDVRNWAAFAININ-KYDNSD-----IRDCFVEMLQDKNEEVRIEA 212

Query: 340 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399
              +             +++L +    LK     V  +II    +        L  ++LL
Sbjct: 213 IIGLSYRKD--------KRVLSVLCDELKKN--TVYDDIIEAAGE--------LGDKTLL 254

Query: 400 PAIVELAED-RHWRVRLAIIE 419
           P +  +        +  + I+
Sbjct: 255 PVLDTMLYKFDDNEIITSAID 275

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 34/249 (13%), Positives = 70/249 (28%), Gaps = 32/249 (12%)

Query: 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277
            +  A +     G   + +         +     D +   R   A  L       G +  
Sbjct: 6   QKRKASK---EYGLYNQCKKLN---DDELFRLLDDHNSLKRISSARVLQLR----GGQDA 55

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS 337
               V   +    D     R   A  + +       E  + +IL       +D S  VR+
Sbjct: 56  ----VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL--NNMALNDKSACVRA 109

Query: 338 ALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397
                               +++        D+  +VR      +          +  ++
Sbjct: 110 TAIESTAQRCK--KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV--------INDKA 159

Query: 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 457
            +P ++ L +D +  VR      I +          +  +    ++ LQDK   +R  A 
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAI 213

Query: 458 NNLKRLAEE 466
             L    ++
Sbjct: 214 IGLSYRKDK 222

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 52/353 (14%), Positives = 105/353 (29%), Gaps = 89/353 (25%)

Query: 37  ARALG-----EERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91
           ++  G     ++    EL   L   +D +    ++ A  L +      G + A   +   
Sbjct: 11  SKEYGLYNQCKKLNDDELFRLL---DDHNSLKRISSARVLQLR-----GGQDA---VRLA 59

Query: 92  ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 151
              C+ +    RD     L +I    +  D V     ++  +                  
Sbjct: 60  IEFCSDKNYIRRDIGAFILGQIKICKKCEDNV---FNILNNM------------------ 98

Query: 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211
                                 D    VR +A  +  +          K  I+   +   
Sbjct: 99  -------------------ALNDKSACVRATAIESTAQRCKKNPIYSPK--IVEQSQITA 137

Query: 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271
            D   +VR        A+  + +        +P+++N  +D +  VR   A  +      
Sbjct: 138 FDKSTNVRRATAF---AISVINDKA-----TIPLLINLLKDPNGDVRNWAAFAININ--K 187

Query: 272 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 331
                   D+   +V +L+D   EVRI A          L+     + +L  + +    +
Sbjct: 188 YDNS----DIRDCFVEMLQDKNEEVRIEAI-------IGLS-YRKDKRVLSVLCDELKKN 235

Query: 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
           +  V   +          LG    +  L  +   L K +  ++  + I KL +
Sbjct: 236 T--VYDDIIEAAG----ELGDKTLLPVLDTM---LYKFDDNEIITSAIDKLKR 279

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 29/179 (16%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +        +    +R  +   +S I     ++ T   LI  L    D + +V    A  
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAISVI----NDKATIPLLINLL---KDPNGDVRNWAAFA 182

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
           +               +      +   +   VR +A+  L     +     ++     L 
Sbjct: 183 IN------INKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK----RVLS---VLC 229

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGK 189
             L     +   + A G   +   +   +L T L        + D   +  SA   L +
Sbjct: 230 DELKKNTVYDDIIEAAG--ELGDKTLLPVLDTMLY-------KFDDNEIITSAIDKLKR 279

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 77.5 bits (190), Expect = 4e-15
 Identities = 74/568 (13%), Positives = 164/568 (28%), Gaps = 69/568 (12%)

Query: 12  AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD---------E 62
              +  L + + ++   + + ++ IA          EL+  + +N   +           
Sbjct: 98  TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLL 157

Query: 63  VLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCR----IGSQMR 118
            L  M E        +    +  ++        T     VR  A+ +L      I + M 
Sbjct: 158 ALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217

Query: 119 ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178
                ++ + +V      E    + +A G            +K  +      L    M  
Sbjct: 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277

Query: 179 VRRSAASNLGKFAATV--------------------EPAHLKTDIMSIFEDLTQ------ 212
                AS   +F +T+                          + I  +  +L        
Sbjct: 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337

Query: 213 ---DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRY---MVANQLY 266
              +D D    ++   C  L         +  +L  +       +WR R    M    + 
Sbjct: 338 EDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM 397

Query: 267 ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILP 322
           +  + V         +P+ + L+ D   +V+   A  + +    +   +  Q     ++ 
Sbjct: 398 DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457

Query: 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382
                  D  +   +   ++I            +EQL     S + + +P +   +I   
Sbjct: 458 ACLIGLQDHPKVATNCSWTIIN----------LVEQLAEATPSPIYNFYPALVDGLIGAA 507

Query: 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGAL 440
           ++++          S   A+  + E     V          +  +LG  +   +++L   
Sbjct: 508 NRIDN---EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLE 564

Query: 441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY-LYRMTILRAI 499
             Q LQ+   +I    A  +++      P      +      ++           +  AI
Sbjct: 565 DAQSLQELQSNILTVLAAVIRKSPSSVEP--VADMLMGLFFRLLEKKDSAFIEDDVFYAI 622

Query: 500 SLLAPVMGSEIT--CSRLLPVVINASKD 525
           S LA  +G           P ++ A   
Sbjct: 623 SALAASLGKGFEKYLETFSPYLLKALNQ 650

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 77.8 bits (190), Expect = 4e-15
 Identities = 81/560 (14%), Positives = 165/560 (29%), Gaps = 66/560 (11%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--------KELIPFLSENNDDDD- 61
           +  L   + +D  QLR  S   L T+   L    +         K++   L+      + 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 62  -----EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
                E L  MA+ L      +  V     +L  L    T     VR + + +L  +   
Sbjct: 148 VSVQLEALDIMADMLSRQGGLL--VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205

Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY---TQLCQ 173
                 VD    L+  L+  +  +   +           A   +   L  I     + C 
Sbjct: 206 CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265

Query: 174 DDMPMVRRSAASNLGKFAATVE---PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230
            D   +R         F          H+ T I    + LT D   +      +  A   
Sbjct: 266 VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 325

Query: 231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRL 288
              +  D  +           D SW+VR   A  L  +              + PA +  
Sbjct: 326 DGGDDDDQGSDDEYSD---DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISR 382

Query: 289 LRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKEL 327
            ++ E  V+           +   P                     +  + +I+  + + 
Sbjct: 383 FKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 442

Query: 328 SSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNI-----IS 380
             + S   R    +++  +  +L    T  I  L+P  +  L D+     L I     + 
Sbjct: 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502

Query: 381 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF------FD 434
            +   +         Q+L+P +V    D  +++    +     L   +            
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562

Query: 435 DKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY 489
             +  L    ++     D    +++ A + + ++    G            + +    + 
Sbjct: 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE 622

Query: 490 LYRMTILRAISLLAPVMGSE 509
           + R+T ++A++L+A      
Sbjct: 623 ITRLTTVKALTLIAGSPLKI 642

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 65.5 bits (158), Expect = 2e-11
 Identities = 59/421 (14%), Positives = 133/421 (31%), Gaps = 31/421 (7%)

Query: 14   LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE----NNDDDDEVLLAMAE 69
            L   L+ +   L+L ++  L  + +   +  T   +   L E     ++ D  V      
Sbjct: 655  LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 714

Query: 70   ELGVFIPYVG--GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW-Y 126
             L            + +  +L  L  L       ++  A+ ++      +  +   +  Y
Sbjct: 715  FLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGY 772

Query: 127  IPLVKRLAAGEW--------FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178
            + L++ L    +          +  S          + P      +      +       
Sbjct: 773  MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD 832

Query: 179  VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 238
              R  A               + ++ S+  +      + V+  A     ALG +      
Sbjct: 833  SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAA---SYALGSISVGN-- 887

Query: 239  VAHILPVIVNFSQDKSWRVRYMVANQLYEL---CEAVGPEPTRMDLVPAYVRLLRDNEAE 295
            +   LP ++        + +Y++ + L E+      VG +P   ++    ++     E  
Sbjct: 888  LPEYLPFVLQ-EITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEG 946

Query: 296  VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 355
             R   A  + K   I +PE  +  +   +   SS +   V +A+   I      +  D  
Sbjct: 947  TRNVVAECLGKLTLI-DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI--DPL 1003

Query: 356  IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRV 413
            ++  +  FL  L+D   +VR   +   +         +     ++LP +    + R   +
Sbjct: 1004 LKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELI 1063

Query: 414  R 414
            R
Sbjct: 1064 R 1064

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 30/303 (9%)

Query: 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWR 256
           I ++ E +T  D+D  R +A      L   L+        D    ++ +I+   +DK+  
Sbjct: 8   ISNLLEKMTSSDKD-FRFMATN---DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63

Query: 257 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 314
           V+ +    L  L   V  E     +V      +  ++ ++R  ++  +      L P   
Sbjct: 64  VQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122

Query: 315 ------LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
                    + I   +    +              +A ++     LL        +L   
Sbjct: 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCL 180

Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L  L      VR   I  L  +    G  +    +   + EL+++         I+ I  
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

Query: 424 LASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481
           ++ Q G    +  +K+  L +++       +R+      +        E  +      ++
Sbjct: 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE--VYPHVSTII 298

Query: 482 EMI 484
            + 
Sbjct: 299 NIC 301

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 27/186 (14%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 354 ATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410
           A+    +   L  +     D R    N +    Q + +   D   + ++  I++L ED++
Sbjct: 2   ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN 61

Query: 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470
             V+   ++ +  L S++     +  +  LC   +      +RD ++  LK +  E  P 
Sbjct: 62  GEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN-MLSDKEQLRDISSIGLKTVIGELPPA 120

Query: 471 WAMQHITPQVLEMI---------NNPHYLYRMTILRAISLLAPVMGSEITCS--RLLPVV 519
            +   +   V + I                ++  L  ++ +    G  +      +L  +
Sbjct: 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 180

Query: 520 INASKD 525
           +     
Sbjct: 181 LPQLTS 186

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 72.5 bits (177), Expect = 1e-13
 Identities = 74/522 (14%), Positives = 169/522 (32%), Gaps = 58/522 (11%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSE-NNDDDDEVLLAM 67
           I  L     +++ ++R N  R L  +     +        ++ ++ +   D D+ V L  
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276

Query: 68  AEELGVF----IPYVGGVEHAHVLLPPLETLCTVEETCVRD------------------- 104
            E         I     V H   L+P L       +  +                     
Sbjct: 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336

Query: 105 --KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162
             K   +   + + +   +L+   +PL+K L     +  + S   +           +  
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 396

Query: 163 ELRSIYTQLCQ---DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219
            L  +   L Q   D   +VR      L ++A  V      T +  +  +L +   DS +
Sbjct: 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456

Query: 220 LLAVEGCAALGKLLEPQD-----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274
            +    C+A   L E         +A+IL  +V        +   ++ + +  L ++VG 
Sbjct: 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516

Query: 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQH 334
              + + +   +  L              + K+  + + +  +  +L C+  +++     
Sbjct: 517 HLNKPEYIQMLMPPL--------------IQKWNMLKDEDKDLFPLLECLSSVATALQSG 562

Query: 335 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-- 392
                  V      L+ K      L        +    D  +  +  L  + + +G +  
Sbjct: 563 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622

Query: 393 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK 448
             +   ++L  + +  +D+   VR +    +  L                 +    L  +
Sbjct: 623 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE 682

Query: 449 VYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPH 488
             S+ + A   +  ++ + G E    +  +  Q++E+IN P+
Sbjct: 683 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN 724

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 41/275 (14%), Positives = 94/275 (34%), Gaps = 18/275 (6%)

Query: 227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA----NQLYELCEAVGPEPTRMDLV 282
             L +L +  D   + L  ++   + +    R +      N +    +   P      + 
Sbjct: 35  QKLEQLNQYPDFNNY-LIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNF-PNGVTDFIK 92

Query: 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSSDSSQHVRSA 338
              +  + D+   +R      +T           P+L +  +   +     ++ +    A
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL-LPKLCSLLDSEDYNTCEGAFGA 151

Query: 339 LASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 395
           L  +    A +L  D     +  ++P FL   K   P +R + ++ ++Q        L+ 
Sbjct: 152 LQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211

Query: 396 --QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYS 451
              S +  +  LA D    VR  +   + +L              +    +Q  QD+  +
Sbjct: 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDEN 271

Query: 452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486
           +   A      LAE+   +  +    P+++ ++ N
Sbjct: 272 VALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 67.4 bits (164), Expect = 8e-13
 Identities = 37/257 (14%), Positives = 97/257 (37%), Gaps = 11/257 (4%)

Query: 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310
           +++ + +R  +AN    L + +        ++   + LL D+   V   A   +    + 
Sbjct: 4   EEEEFDIREALANG-EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK- 61

Query: 311 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 370
              +L    +      L    +  +   +A     MA    +   ++ ++P+  +  +  
Sbjct: 62  TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKSMIPVLFANYRIG 119

Query: 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430
               ++N+   L+++ +   + +   S++   + +   ++   +L  + +I  +      
Sbjct: 120 DEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF 176

Query: 431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 490
            + +  L  + +  L D    +R +A   L  LA        ++ +  + LE +N+   L
Sbjct: 177 KYVNPFLPRI-INLLHDGDEIVRASAVEALVHLATL---NDKLRKVVIKRLEELNDTSSL 232

Query: 491 YRMTILRAISLLAPVMG 507
              T+   IS L  + G
Sbjct: 233 VNKTVKEGISRLLLLEG 249

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 43/260 (16%), Positives = 91/260 (35%), Gaps = 15/260 (5%)

Query: 18  LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIP 76
           ++ ++  +R  ++     + + L   +  + ++  L E  +DD   V+      + V   
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 77  YVGGVEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIP-LVKRLA 134
                +    +L  L +L    E   +  +  ++  ++  +  + +LV   IP L     
Sbjct: 62  --TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--KPELVKSMIPVLFANYR 117

Query: 135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194
            G+  T    +  L  IA  + P ++ + +R   + L        + +A + +       
Sbjct: 118 IGDEKTKINVSYALEEIA-KANPMLMASIVRDFMSML-SSKNREDKLTALNFIEAMG--E 173

Query: 195 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254
                    +    +L  D  + VR  AVE   AL  L    D +  ++   +    D S
Sbjct: 174 NSFKYVNPFLPRIINLLHDGDEIVRASAVE---ALVHLATLNDKLRKVVIKRLEELNDTS 230

Query: 255 WRVRYMVANQLYELCEAVGP 274
             V   V   +  L    G 
Sbjct: 231 SLVNKTVKEGISRLLLLEGH 250

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 60.9 bits (147), Expect = 2e-10
 Identities = 42/260 (16%), Positives = 97/260 (37%), Gaps = 14/260 (5%)

Query: 98  EETCVRDKAV--ESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155
           EE  +R+     E L +I    +  +       L++ L    W   + +   +  IA  +
Sbjct: 6   EEFDIREALANGEHLEKILIMAKYDE--SVLKKLIELLDDDLWTVVKNAISIIMVIA-KT 62

Query: 156 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ 215
             D+ +  L+ +++ L + +   + +  A   G+ A   +P  +K+ I  +F +    D 
Sbjct: 63  REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-EKPELVKSMIPVLFANYRIGD- 120

Query: 216 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275
           +  ++        + K       +A I+   ++    K+   +    N +  + E    +
Sbjct: 121 EKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFK 177

Query: 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 335
                 +P  + LL D +  VR +A         +      ++ ++    E  +D+S  V
Sbjct: 178 YVN-PFLPRIINLLHDGDEIVRASAV---EALVHLATLNDKLRKVVIKRLEELNDTSSLV 233

Query: 336 RSALASVIMGMAPLLGKDAT 355
              +   I  +  L G  ++
Sbjct: 234 NKTVKEGISRLLLLEGHSSS 253

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 46/238 (19%), Positives = 92/238 (38%), Gaps = 45/238 (18%)

Query: 228 ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 287
                 +P+      + + +   QD S+ VR   A  L      +G E      V   ++
Sbjct: 6   HHHHHTDPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLIK 52

Query: 288 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347
            L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G  
Sbjct: 53  ALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ- 102

Query: 348 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407
             +G +  +E L+      LKDE   VR+     L ++          +  +  +++  +
Sbjct: 103 --IGDERAVEPLIK----ALKDEDWFVRIAAAFALGEIG--------DERAVEPLIKALK 148

Query: 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465
           D    VR +  + +     ++G     +++ A   +  +      R  A N L+    
Sbjct: 149 DEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 40/215 (18%)

Query: 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229
           +  QDD   VRR+AA  LGK         L            +D+   VR  A +   AL
Sbjct: 21  KNLQDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---AL 69

Query: 230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL 289
           G++ + +      +  ++   +D+   VR   A  L ++ +           V   ++ L
Sbjct: 70  GQIGDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKAL 116

Query: 290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349
           +D +  VRIAAA         +  E A++ ++  +K    D    VR + A  +  +   
Sbjct: 117 KDEDWFVRIAAA----FALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGEIGG- 167

Query: 350 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
                  E++      L +      R   ++ L+ 
Sbjct: 168 -------ERVRAAMEKLAETGTGFARKVAVNYLET 195

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 39/214 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 147
           +         +   VR  A  +L +IG +      V+   PL+K L   + +  R +A  
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVE---PLIKALKDEDAWVRRAAADA 68

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L  I    A + L   L        +D+   VR+SAA  LG+         L        
Sbjct: 69  LGQIGDERAVEPLIKAL--------KDEDGWVRQSAAVALGQIGDERAVEPL-------- 112

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
               +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 113 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 164

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           +            +  A  +L        R  A 
Sbjct: 165 IGGE--------RVRAAMEKLAETGTGFARKVAV 190

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 30/184 (16%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +  LI  LK++D  +R  +   L      +G+ER  + LI  L    D+D  V  + A  
Sbjct: 47  VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPLIKAL---KDEDGWVRQSAAVA 99

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
           LG       G E A   + PL      E+  VR  A  +L  IG +      V+   PL+
Sbjct: 100 LGQI-----GDERA---VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLI 144

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
           K L   + +  + +A  L  I        ++        +L +      R+ A + L   
Sbjct: 145 KALKDEDGWVRQSAADALGEIGGERVRAAME--------KLAETGTGFARKVAVNYLETH 196

Query: 191 AATV 194
            + +
Sbjct: 197 KSLI 200

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 45/238 (18%)

Query: 265 LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 324
            +       PE      V  Y++ L+D+   VR AAA  + K    +  E A++ ++  +
Sbjct: 4   SHHHHHHTDPE-----KVEMYIKNLQDDSYYVRRAAAYALGK----IGDERAVEPLIKAL 54

Query: 325 KELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
           K    D    VR A A+  +G    +G +  +E L+      LKDE   VR +    L Q
Sbjct: 55  K----DEDAWVRRA-AADALGQ---IGDERAVEPLIK----ALKDEDGWVRQSAAVALGQ 102

Query: 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444
           +          +  +  +++  +D  W VR+A    +  +  +  V    + L       
Sbjct: 103 IG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV----EPLIKA---- 146

Query: 445 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL 502
           L+D+   +R +AA+ L  +  E         +   + ++        R   +  +   
Sbjct: 147 LKDEDGWVRQSAADALGEIGGE--------RVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 39/214 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 147
           +         +   VR  A  +L +IG +      V+   PL+K L   + +  R +A  
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVE---PLIKALKDEDAWVRRAAADA 73

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L  I    A + L         +  +D+   VR+SAA  LG+         L        
Sbjct: 74  LGQIGDERAVEPL--------IKALKDEDGWVRQSAAVALGQIGDERAVEPL-------- 117

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
               +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 118 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 169

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           +            +  A  +L        R  A 
Sbjct: 170 IGGE--------RVRAAMEKLAETGTGFARKVAV 195

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 43/212 (20%), Positives = 77/212 (36%), Gaps = 40/212 (18%)

Query: 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232
           QDD   VRR+AA  LGK         L            +D+   VR  A +   ALG++
Sbjct: 29  QDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---ALGQI 77

Query: 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 292
            + +      +  ++   +D+   VR   A  L ++ +           V   ++ L+D 
Sbjct: 78  GDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDE 124

Query: 293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 352
           +  VRIAAA         L  E+  +  +  + +   D    VR + A  +  +      
Sbjct: 125 DWFVRIAAA-------FAL-GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG---- 172

Query: 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
               E++      L +      R   ++ L+ 
Sbjct: 173 ----ERVRAAMEKLAETGTGFARKVAVNYLET 200

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 48/237 (20%), Positives = 94/237 (39%), Gaps = 45/237 (18%)

Query: 227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 286
           AA     +P+      + + +   QD S+ VR   A  L      +G E      V   +
Sbjct: 10  AAAPLRADPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLI 56

Query: 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGM 346
           + L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G 
Sbjct: 57  KALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ 107

Query: 347 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406
              +G +  +E L+      LKDE   VR+     L ++          +  +  +++  
Sbjct: 108 ---IGDERAVEPLIK----ALKDEDWFVRIAAAFALGEIG--------DERAVEPLIKAL 152

Query: 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463
           +D    VR +  + +     ++G     +++ A   +  +      R  A N L+  
Sbjct: 153 KDEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETH 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 30/188 (15%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +  LI  LK++D  +R  +   L      +G+ER  + LI  L    D+D  V  + A  
Sbjct: 52  VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPLIKAL---KDEDGWVRQSAAVA 104

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
           LG       G E A   + PL      E+  VR  A  +L  IG +      V+   PL+
Sbjct: 105 LGQI-----GDERA---VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLI 149

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
           K L   + +  + +A  L  I        ++        +L +      R+ A + L   
Sbjct: 150 KALKDEDGWVRQSAADALGEIGGERVRAAME--------KLAETGTGFARKVAVNYLETH 201

Query: 191 AATVEPAH 198
            +     H
Sbjct: 202 KSFNHHHH 209

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 52/368 (14%), Positives = 102/368 (27%), Gaps = 33/368 (8%)

Query: 21  DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF------ 74
            +     ++ + ++ IA A        ELIP L  N  + +         L         
Sbjct: 101 TETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160

Query: 75  IPYVGGVEHAHVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMRESDLVDWYIPLVKR 132
           I      + ++ +L  +      EE    V+  A  +L       + +   +     + +
Sbjct: 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220

Query: 133 LAAGEWFT----ARVSACGLFHIAYPSAPDILKTELR----SIYTQLCQDDMPMVRRSAA 184
           +            RV+A              ++T +     +I  +  + D+  V     
Sbjct: 221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 280

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
                            D+     +  +  +            AL  L+     +   L 
Sbjct: 281 EFWSNVCDEEM------DLAIEASEAAEQGRPPEHTSKFYAKGALQYLV---PILTQTLT 331

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAG 302
                  D  W         L  L      +  P  +  +  +   +++ +   R AA  
Sbjct: 332 KQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH---IKNPDWRYRDAAVM 388

Query: 303 KVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359
                     P      +   +P + EL  D S  VR   A  +  +  LL + A  +  
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448

Query: 360 LPIFLSLL 367
           L   L  L
Sbjct: 449 LAPLLQCL 456

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 50/333 (15%), Positives = 101/333 (30%), Gaps = 37/333 (11%)

Query: 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-----VRLLAVEGCA 227
            +    ++ S    +G     ++P  L+     I   + Q  +       V+L A     
Sbjct: 140 PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199

Query: 228 ALGKLLEPQDCVAH----ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDL 281
              +  +           I+ V+   +Q    RVR      L ++        E      
Sbjct: 200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259

Query: 282 VPAY-VRLLRDNEAEVRIAAAGKVTKFCR------ILNPELAIQHILPCVKELSSDSSQH 334
           + A  +  ++ +  EV +      +  C       I   E A Q   P        S  +
Sbjct: 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT-----SKFY 314

Query: 335 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394
            + AL  ++  +   L K    +           D+  +        L  +      D++
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLMLLATCCEDDIV 364

Query: 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYS 451
              +LP I E  ++  WR R A +     +            +       ++ ++D    
Sbjct: 365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423

Query: 452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484
           +RD AA  + R+ E              +L+ +
Sbjct: 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 46/325 (14%), Positives = 98/325 (30%), Gaps = 108/325 (33%)

Query: 217 SVRLLAVEGCAA---------------LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV 261
           +   +A++ C +               L     P+  +  +  ++     + + R  +  
Sbjct: 164 TW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 262 ANQLYELCEAVGPEPTRMDLVPAYVR--LLRDNEAEVRIAAAGKVTKF---CRIL----N 312
             +L     ++  E  R+     Y    L+  N    +   A     F   C+IL     
Sbjct: 222 NIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-----FNLSCKILLTTRF 274

Query: 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
            ++           LS+ ++ H+       +   +  L  D   + LL  +L     + P
Sbjct: 275 KQVT--------DFLSAATTTHIS------LDHHSMTLTPDEV-KSLLLKYLDCRPQDLP 319

Query: 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432
                         +V+  +    S++   +        R  LA  +             
Sbjct: 320 -------------REVLTTNPRRLSIIAESI--------RDGLATWDN------------ 346

Query: 433 FDDKLGALCMQWLQ---DKVYSIRDAAANNL-----KRLAEEFG--PEWAMQHITPQVLE 482
                      W     DK+ +I +++ N L     +++ +     P  A  HI   +L 
Sbjct: 347 -----------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLS 393

Query: 483 MI-NNPHYLYRMTI---LRAISLLA 503
           +I  +      M +   L   SL+ 
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVE 418

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 63/399 (15%), Positives = 123/399 (30%), Gaps = 128/399 (32%)

Query: 193 TVEPAHLKTDIMSIFE-----DL-TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246
           T E  +   DI+S+FE     +   +D QD  +  ++     +  ++  +D V+  L + 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 247 VNFSQDKSWRVRYMVANQL---YE-LCEAV-----GPEPTRMDLVPAYVRLLRDNEAEVR 297
                 +   V+  V   L   Y+ L   +      P       +    RL  DN+    
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---- 124

Query: 298 IAAAGKVTKF--CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--- 352
                   K+   R+  P L ++  L    EL    +++V      +I G+    GK   
Sbjct: 125 -----VFAKYNVSRL-QPYLKLRQAL---LEL--RPAKNV------LIDGVLG-SGKTWV 166

Query: 353 ------DATIEQLLP--IF-LSLLKDEFPDVRLNIISKL---------DQVNQVIGIDLL 394
                    ++  +   IF L+L     P+  L ++ KL          + +    I L 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 395 SQSLLPAIVELAEDR----------------HWRV------------------RLAIIEY 420
             S+   +  L + +                 W                     L+    
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +      +    D++ +L +++L  +            + L  E      +    P+ 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRP-----------QDLPRE------VLTTNPRR 329

Query: 481 LEMI-----NNP-------HYLY-RMTILRAISL--LAP 504
           L +I     +         H    ++T +   SL  L P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 11/211 (5%)

Query: 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 262
           +  +F+ L+    D+   +A E  + L   +   D   H    +    +DK      M A
Sbjct: 16  LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQA 75

Query: 263 NQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
                    + P  EP  + LVPA      + + E++  A+  +      +NP  AI+ +
Sbjct: 76  VAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV-AIKAL 134

Query: 321 LPCVKELSSDSSQHVRSALASV-IMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRL 376
           LP +   +   +   +  +A +          KD     + +L+P+    + D   +V+ 
Sbjct: 135 LPHLTN-AIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA 193

Query: 377 NIISKLDQVNQVIG---IDLLSQSLLPAIVE 404
              + + +  + +    I+    SL+  I +
Sbjct: 194 AATAAMTKATETVDNKDIERFIPSLIQCIAD 224

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 57/385 (14%), Positives = 116/385 (30%), Gaps = 26/385 (6%)

Query: 20  NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN---NDDDDEVLLAMAEELGVFIP 76
             +     ++ + ++ IA A        ELIP L  N    +  + +  +  E +G    
Sbjct: 100 GTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159

Query: 77  YVGG---VEHAHVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131
            +      + ++ +L  +      EE    V+  A  +L       + +   +     + 
Sbjct: 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219

Query: 132 RLAAGEWFT----ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           ++            RV+A              ++T +      +  + M       A   
Sbjct: 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279

Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
            +F + V     + D+     +  +  +            AL  L+     +   L    
Sbjct: 280 IEFWSNV--CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV---PILTQTLTKQD 334

Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA---GKV 304
               D  W         L  L      +     ++P     +++ +   R AA    G +
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCI 393

Query: 305 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLL 360
            +       +  +   +P + EL  D S  VR   A  +  +  LL      D  +  LL
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQV 385
              +  L  E P V  N+      +
Sbjct: 454 QCLIEGLSAE-PRVASNVCWAFSSL 477

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800

 Score = 50.3 bits (119), Expect = 1e-06
 Identities = 40/302 (13%), Positives = 108/302 (35%), Gaps = 25/302 (8%)

Query: 224 EGCA-ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282
           +  A  L ++         I+  +V F     W+V++     L  L E V  +     L 
Sbjct: 246 DAAAYLLSRIYPLIG-PNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKD---GLC 301

Query: 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 342
              V LL   + ++++ +A  +  F    + +L ++     ++     S      +  S 
Sbjct: 302 RKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS-----VSKTSN 356

Query: 343 IMGMAPLLGKDATIE---QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399
           +  +  +  ++  +    + L           P+VR +I++ +  +++     L+++ +L
Sbjct: 357 LSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVL 416

Query: 400 ----PAIVELAEDRHWRVRLAIIE-YIPLLASQLGVGFF-----DDKLGALCMQWLQDKV 449
                 I E+A  +  + R  + +  I    + +G   +     DD +    + + +  +
Sbjct: 417 IEEKDEIREMAI-KLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYFTKSGI 475

Query: 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509
             +        + L  E   +  +  +   +    +   ++     ++A+    P   + 
Sbjct: 476 NVVGKDEILKNRCLLFECIMKSGLPDLQSTIETTTSRT-FISLYRSVQALVKDTPYTPAN 534

Query: 510 IT 511
           I 
Sbjct: 535 IE 536

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 27/144 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 147
           L P  +    E   VR     +L R+G +  E        PL++ L+  +W     +A  
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMGDEAFE--------PLLESLSNEDWRIRGAAAWI 65

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           + +     A + L         +L +DD   VR  AA +L +       A +        
Sbjct: 66  IGNFQDERAVEPL--------IKLLEDDSGFVRSGAARSLEQIGGERVRAAM-------- 109

Query: 208 EDLTQDDQDSVRLLAVEGCAALGK 231
           E L +      R +AV     L  
Sbjct: 110 EKLAETGTGFARKVAVN---YLET 130

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 25/138 (18%)

Query: 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 341
           +      + D    VR   +  +++    +  E A + +L  +     +    +R A A+
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSR----MGDE-AFEPLLESLS----NEDWRIRGA-AA 63

Query: 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401
            I+G       +  +E L+     LL+D+   VR      L+Q    IG     + +  A
Sbjct: 64  WIIGN---FQDERAVEPLIK----LLEDDSGFVRSGAARSLEQ----IG----GERVRAA 108

Query: 402 IVELAEDRHWRVRLAIIE 419
           + +LAE      R   + 
Sbjct: 109 MEKLAETGTGFARKVAVN 126

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 21/158 (13%), Positives = 42/158 (26%), Gaps = 27/158 (17%)

Query: 33  LSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92
           + +                 +    D++  V   ++  L                  PL 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHM---ADENKWVRRDVSTALS---------RMGDEAFEPLL 48

Query: 93  TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA 152
              + E+  +R  A   +     +      V+   PL+K L     F    +A  L  I 
Sbjct: 49  ESLSNEDWRIRGAAAWIIGNFQDE----RAVE---PLIKLLEDDSGFVRSGAARSLEQIG 101

Query: 153 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
                  ++        +L +      R+ A + L   
Sbjct: 102 GERVRAAME--------KLAETGTGFARKVAVNYLETH 131

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA---GKVTKF 307
            D++  VR  V+  L  + +               +  L + +  +R AAA   G     
Sbjct: 22  ADENKWVRRDVSTALSRMGDEA---------FEPLLESLSNEDWRIRGAAAWIIGN---- 68

Query: 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367
                 E A++ ++  ++    D S  VRS  A  +      +G +     +      L 
Sbjct: 69  ---FQDERAVEPLIKLLE----DDSGFVRSGAARSLEQ----IGGERVRAAMEK----LA 113

Query: 368 KDEFPDVRLNIISKLD 383
           +      R   ++ L+
Sbjct: 114 ETGTGFARKVAVNYLE 129

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 46.6 bits (110), Expect = 6e-06
 Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 19/217 (8%)

Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----MDLVPAYV 286
           +L  +  +  +            W+ R     + ++   +   +         +L+  Y 
Sbjct: 7   MLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYG 66

Query: 287 RLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILPCVKELSSDSSQHVRSALAS 341
            ++ +D   +    AA  V   C  L      +     +   + + + +    V  A+  
Sbjct: 67  HIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 126

Query: 342 VIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGI--D 392
            ++ +       A     E +L   L  +K + P +R     + +  + +          
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186

Query: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429
            L   ++P ++++  D    +R    E   +L    G
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 22/181 (12%), Positives = 64/181 (35%), Gaps = 16/181 (8%)

Query: 210 LTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQL 265
           + +D       LA +    +   L+        V+ +   +++ +++K   V   +   L
Sbjct: 69  IQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKAL 128

Query: 266 YELCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAG------KVTKFCRILNPELA 316
             +C+   P  +     D++   +  ++    ++R+          K  K          
Sbjct: 129 LTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL 188

Query: 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPD 373
              ++P V ++ +D+   +R+        +  + G +    T+E L  +    +++    
Sbjct: 189 KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248

Query: 374 V 374
           +
Sbjct: 249 L 249

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 21/183 (11%), Positives = 53/183 (28%), Gaps = 14/183 (7%)

Query: 139 FTARVSACGLFHIAYPSAPDILKTELRSIY---TQLCQDDMPMVRRSAASNLGKFAATVE 195
           F   ++A         ++P  L +    +    T    +  P                + 
Sbjct: 60  FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIR 119

Query: 196 PAHLKTDIMSIFEDLTQ------DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 249
                     +   +        + +D++R    +    L  ++ P      + P++++ 
Sbjct: 120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDA 175

Query: 250 SQDKSWRVRYMVANQLYELCEAVGPEPTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308
            + K+ R R      +       G  P + + +       + D +  VR AA   +    
Sbjct: 176 LKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235

Query: 309 RIL 311
           +  
Sbjct: 236 KFE 238

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 26/212 (12%), Positives = 77/212 (36%), Gaps = 17/212 (8%)

Query: 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---SDSSQHVRSALASV 342
           +  L   + +  +AA   + +     +P   + +    +K  +    +++      +  +
Sbjct: 52  MSQLFHKDFKQHLAALDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLEL 110

Query: 343 IMGMAPLLGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 396
              +  L+           +   +P  L    +   ++R ++   ++ ++ V+G   ++ 
Sbjct: 111 CKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTP 170

Query: 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD-KLGALCMQWLQDKVYSIRDA 455
            LL A+    + ++ R R   +  I    +  G+       +      ++ DK  ++R+A
Sbjct: 171 MLLDAL----KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNA 226

Query: 456 AANNLKRLAEEFGPEWA--MQHITPQVLEMIN 485
           A N L    +  G +       +  +   ++ 
Sbjct: 227 AINVLVACFKFEGDQMWKAAGRMADKDKSLVE 258

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 50/299 (16%), Positives = 89/299 (29%), Gaps = 29/299 (9%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGV 73
                  D   L   +   +   A         + L   L    +D      A A  +G+
Sbjct: 442 SGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVL---YNDSATSGEAAALGMGL 498

Query: 74  FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAV-ESLCRIGSQMRESDLVDWYIPLVKR 132
            +   G  E  H +    +   T      R  AV  +L   G Q    +L D    L+ +
Sbjct: 499 CMLGTGKPEAIHDMFTYSQE--TQHGNITRGLAVGLALINYGRQ----ELAD---DLITK 549

Query: 133 LAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192
           + A +    R        +AY    +     ++ +      D    VRR+A   LG    
Sbjct: 550 MLASDESLLRYGGAFTIALAYAGTGNNSA--VKRLLHVAVSDSNDDVRRAAVIALGFVLL 607

Query: 193 TVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252
                   T +  I + L++     VR        ALG     +  +   + V+   ++D
Sbjct: 608 RDY-----TTVPRIVQLLSKSHNAHVRCGT---AFALGIACAGKG-LQSAIDVLDPLTKD 658

Query: 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311
               VR      L  +      E       P    + ++  + +       + KF   +
Sbjct: 659 PVDFVRQAAMIAL-SMILIQQTEKLN----PQVADINKNFLSVITNKHQEGLAKFGACV 712

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219
            K  L  +  ++ +D+   V+   A    +F   +E        + I ++  +      R
Sbjct: 101 DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTR 156

Query: 220 LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
             A EG          ++     +  I +  +D S  VR  V N L
Sbjct: 157 RAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNAL 202

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507

 Score = 41.9 bits (97), Expect = 4e-04
 Identities = 32/265 (12%), Positives = 83/265 (31%), Gaps = 29/265 (10%)

Query: 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 339
             + A + L  D +  +R  A  ++ +F      E   +      + L +D S       
Sbjct: 65  SAINAQLDLCEDEDVSIRRQAIKELPQFAT---GENLPRVADILTQLLQTDDSAE----F 117

Query: 340 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399
             V   +  +   DA  +  L    S +      VR   I  L    + +  ++L++ + 
Sbjct: 118 NLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE 175

Query: 400 PAIVELAED-------RHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKV 449
             I+  ++          + + + I+  +  L +  G     +   +   L   +     
Sbjct: 176 ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDP 235

Query: 450 YSIRDAAANNLKRLAEEFGPEWA--------MQHITPQVLEMINNPHYL-YRMTILRAIS 500
             + D      ++    F              + + P +  +      L  ++ +L+ ++
Sbjct: 236 DCV-DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294

Query: 501 LLAPVMGSEITCSRLLPVVINASKD 525
            ++   G        L  + +   +
Sbjct: 295 EMSSFCGDMEKLETNLRKLFDKLLE 319

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 44/263 (16%), Positives = 81/263 (30%), Gaps = 28/263 (10%)

Query: 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD------IMSIFEDLTQDDQDSVR---L 220
           ++  +     +R A   L +   T+ P    +       I  +   L QD         L
Sbjct: 543 RMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602

Query: 221 LAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC---EAVGPEPT 277
           +A+   A++ + +  +      +  I  +  +    +    A  L  L    + +     
Sbjct: 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEG 662

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAG-------KVTKFCRILNPELAIQHILPCVKELSSD 330
             D V     L  D + E   A AG          K C  +   LAI   L  +  L ++
Sbjct: 663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI---LAIASWLDILHTLIAN 719

Query: 331 SSQHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
            S  V+     +I+ M     +      +  I +LL     L  D     R      L  
Sbjct: 720 PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

Query: 385 VNQVIGIDLLSQSLLPAIVELAE 407
             +   I+    + +P +     
Sbjct: 780 AERYRIIERSDNAEIPDVFAENS 802

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 58/381 (15%), Positives = 110/381 (28%), Gaps = 32/381 (8%)

Query: 54  SENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRI 113
            + N +DD+V   +  E               V     +   T  +  VR          
Sbjct: 48  GKGNPEDDDVDNQVLYEWEQGFN--QSFNQEQVADIDGQYAMTRAQR-VRAAMFPETLDE 104

Query: 114 GSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ 173
           G Q+  +     +   V+RLA             + ++        L T      T+L  
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHA----VVNLINYQDDAELATRAIPELTKLLN 160

Query: 174 DDMPMVRRSAA---SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230
           D+  +V   AA     L K  A+         ++S      Q+  D     A      L 
Sbjct: 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE--TARCTSGTLH 218

Query: 231 KLLEPQDCVAHI-----LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL---- 281
            L   ++ +  I     +P +VN        V +     L+ L   +  E  +M +    
Sbjct: 219 NLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL--LHQEGAKMAVRLAG 276

Query: 282 -VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPC-VKELSSDSSQHV 335
            +   V LL     +        +       N E    +         V  + + + + +
Sbjct: 277 GLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESKLIILASGGPQALVNIMRTYTYEKL 335

Query: 336 RSALASVIMGMAPLLGKDATIEQL--LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393
               + V+  ++        I +   +      L D    +  N +  L  ++       
Sbjct: 336 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 395

Query: 394 LSQSLLPAIVELAEDRHWRVR 414
             + LL  +V+L       V 
Sbjct: 396 GMEGLLGTLVQLLGSDDINVV 416

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 47/367 (12%), Positives = 99/367 (26%), Gaps = 46/367 (12%)

Query: 100 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG-LFHIAYPSAPD 158
              R             +  + L+      V  L   +    +  +   L +IA  ++  
Sbjct: 79  QAARKLLSREKQPPIDNIIRAGLIP---KFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135

Query: 159 ---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS---------- 205
              ++       +  L       +   A   LG  A   + +  +  ++           
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA--GDGSAFRDLVIKHGAIDPLLAL 193

Query: 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVA 262
           +                    + L +   P    D V  ILP +V         V     
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253

Query: 263 NQLYELCEAVGPEPTRM----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---EL 315
             +  L +    E   M     +VP  V+LL   E  +   A   +       +    ++
Sbjct: 254 WAISYLTD-GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312

Query: 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMA---PLLGKDATIEQLLPIFLSLLKDEFP 372
                L     L ++   +++      +  +        +      L+P  + +L     
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 372

Query: 373 DVRL-------NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR---LAIIEYIP 422
             +        N  S       V    L+   ++  ++ L   +  ++    L  I  I 
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVY---LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429

Query: 423 LLASQLG 429
             A +LG
Sbjct: 430 QAAEKLG 436

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	530
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.94
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.94
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.93
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.93
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.91
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.91
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.9
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.9
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.9
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.89
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.89
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.89
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.87
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.87
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.85
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.85
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.81
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.8
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.8
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.79
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.79
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.78
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.77
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.76
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.75
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.75
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.68
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.68
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.68
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.68
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.66
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.65
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.65
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.65
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.65
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.65
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.64
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.64
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.56
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.56
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.56
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.55
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.54
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.53
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.53
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.52
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.51
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.51
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.5
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.49
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.48
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.47
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.47
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.46
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.46
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.46
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.4
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.4
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.39
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.36
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.34
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.33
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.32
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.31
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.29
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.27
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.26
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.18
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.17
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.15
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.14
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.09
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.09
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.09
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.08
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.07
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.04
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.03
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.01
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.0
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.98
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.95
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.95
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.89
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.77
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.76
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.63
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.54
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.22
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.13
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.12
3grl_A	651	General vesicular transport factor P115; vesicle t	98.06
3grl_A	651	General vesicular transport factor P115; vesicle t	98.0
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.86
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.72
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	97.15
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.07
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.94
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.94
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	96.92
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.79
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.24
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.92
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	94.67
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	93.59
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	93.47
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	93.41
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	92.81
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	92.19
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	91.75
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	91.72
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	90.94
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	90.92
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	89.91
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	89.78
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	88.78
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	87.87
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	87.81
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	87.49
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	86.44
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	84.27
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	84.02
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	83.94
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	83.21
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	82.82
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	82.51
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	81.56

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=3.3e-58  Score=472.59  Aligned_cols=528  Identities=60%  Similarity=0.974  Sum_probs=494.6

Q ss_pred             CCCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCcc
Q 009632            3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE   82 (530)
Q Consensus         3 ~~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~   82 (530)
                      .+|+++++|..|+++++++|+..|..|++.++.++..+|++..+++++|.+.+..|+++++|..++.+++.+.+.+++..
T Consensus         4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~   83 (588)
T 1b3u_A            4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE   83 (588)
T ss_dssp             CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred             ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence            46889999999999999999999999999999999999999999999999988668899999999999999999888778


Q ss_pred             chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHH
Q 009632           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT  162 (530)
Q Consensus        83 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~  162 (530)
                      +...+++.|..+.+|++..||..|+.+++.++..++++.....++|.+..+.+++++.+|..++.+++.++...++..++
T Consensus        84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~  163 (588)
T 1b3u_A           84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA  163 (588)
T ss_dssp             GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            88999999999999999999999999999999999988888889999999999999999999999999999999988889


Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhcc
Q 009632          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (530)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  242 (530)
                      .+++.+..+++|+++.||..++.+++.++...+++...+.++|.+.++++|+++.||..|+++++.++...+++...+.+
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  243 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV  243 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999887778889999999999999999999999999999999887777889


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHh
Q 009632          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ  318 (530)
Q Consensus       243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~  318 (530)
                      +|.+..+++|++|.||..++.+++.++...+++.....++|.+.++++|++++||..++.+++.++..++.+    .+.+
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  323 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS  323 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence            999999999999999999999999999988876666789999999999999999999999999999988865    5568


Q ss_pred             hhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhH
Q 009632          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (530)
Q Consensus       319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  398 (530)
                      .++|.+..+++|++|.+|..++.+++.++..+|.+...+.++|.+..+++|+++.||..++.+++.++..+|.+...+.+
T Consensus       324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~  403 (588)
T 1b3u_A          324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL  403 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            89999999999999999999999999999999988778889999999999999999999999999999999887777889


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHH
Q 009632          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (530)
Q Consensus       399 ~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~  478 (530)
                      +|.+...+++++|++|..++.+++.++..+|.+++.+.++|.+...+.|+++.||..|+.+++.++..+|+++....++|
T Consensus       404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp  483 (588)
T 1b3u_A          404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP  483 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            99999999999999999999999999999998888788999999999999999999999999999999998877788999


Q ss_pred             HHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCCCCC
Q 009632          479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL  530 (530)
Q Consensus       479 ~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~~~v  530 (530)
                      .+..+.+|+++.+|..++.+++.++..+|.+.+.+.++|.+...++|+.++|
T Consensus       484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~V  535 (588)
T 1b3u_A          484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV  535 (588)
T ss_dssp             HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchH
Confidence            9999999999999999999999999999988889999999999999998764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=1.4e-49  Score=408.38  Aligned_cols=488  Identities=19%  Similarity=0.257  Sum_probs=436.1

Q ss_pred             HHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhh
Q 009632           16 DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL   94 (530)
Q Consensus        16 ~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l   94 (530)
                      ..+.++++..|..|...|+.++..++++...+.++|.+.. ..+++..+|..++..++.++...+ ......++|.+..+
T Consensus        94 ~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-~~~~~~l~~~l~~l  172 (588)
T 1b3u_A           94 SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNL  172 (588)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HHHHHHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence            3346788999999999999999888887777788888877 566788899999999998888766 44567889999999


Q ss_pred             hcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-HHHHHHHHHHhhcC
Q 009632           95 CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQ  173 (530)
Q Consensus        95 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~l~~l~~  173 (530)
                      ++|+++.||..|+.+++.+++..+++.....++|.+..+.+|+++.+|..++..++.+....+++ ..+.++|.+..+++
T Consensus       173 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~  252 (588)
T 1b3u_A          173 CSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE  252 (588)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999998887777788999999999999999999999999888777765 56778999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----hhhhccHHHHHHh
Q 009632          174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNF  249 (530)
Q Consensus       174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~  249 (530)
                      |++|.||+.++.+++.++...+++.+.+.++|.+.+++.|+++.||..|.++++.++..++++    .+.+.++|.+..+
T Consensus       253 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~  332 (588)
T 1b3u_A          253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL  332 (588)
T ss_dssp             CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence            999999999999999999988887777889999999999999999999999999999988875    5678899999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632          250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (530)
Q Consensus       250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~  329 (530)
                      ++|++|.||..++.+++.++..+|.+...+.++|.+..+++|++++||.+++.+++.++..++.+...+.++|.+..+.+
T Consensus       333 l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~  412 (588)
T 1b3u_A          333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE  412 (588)
T ss_dssp             HTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999988876656778999999999999999999999999999998887777888999999999


Q ss_pred             CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC
Q 009632          330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  409 (530)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~  409 (530)
                      |++|++|..++..++.++..+|.+.+.+.++|.+..+++|+++.||..++.+++.++..+|.++..+.++|.+..+..++
T Consensus       413 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~  492 (588)
T 1b3u_A          413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP  492 (588)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS
T ss_pred             CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCC
Confidence            99999999999999999988887766678899999999999999999999999999999998877788999999998999


Q ss_pred             ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCCh
Q 009632          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY  489 (530)
Q Consensus       410 ~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~  489 (530)
                      +|.+|..++.+++.++..+|.+.+...++|.+.+.+.|++++||..++++++.+...+|.....+.++|.+..+.+|+++
T Consensus       493 ~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~  572 (588)
T 1b3u_A          493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV  572 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCch
Confidence            99999999999999999999888888999999999999999999999999999999888876667899999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 009632          490 LYRMTILRAISLLAP  504 (530)
Q Consensus       490 ~vr~~a~~~l~~i~~  504 (530)
                      +||..|..+++.+.+
T Consensus       573 ~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          573 DVKYFAQEALTVLSL  587 (588)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHhhc
Confidence            999999999987653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=7.4e-34  Score=302.96  Aligned_cols=515  Identities=16%  Similarity=0.134  Sum_probs=407.8

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhh-------hhcccccccc-ccCCchHHHHHHHHHHhcccccCCC--
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT-------RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG--   80 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~-------~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~--   80 (530)
                      +..|++.+.++++..|..++..|+.+.+..++...       .+.++|.+.+ +.++++++|..+..+++.+....+.  
T Consensus       130 l~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~  209 (852)
T 4fdd_A          130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL  209 (852)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH
Confidence            67888999999999999999999999888765421       3456777666 6788999999999999988764332  


Q ss_pred             ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh--hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC-
Q 009632           81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-  157 (530)
Q Consensus        81 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~-  157 (530)
                      ..+...+++.+..+.+|+++.||..++.+|..+++..++..  ....+++.+.....++++.+|..++..+..+++... 
T Consensus       210 ~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~  289 (852)
T 4fdd_A          210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC  289 (852)
T ss_dssp             HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence            12345677778888889999999999999999998765421  123367777788888888999999999888876432 


Q ss_pred             ----hHHHHHHHHHHHhhc-----------CC-----------CChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh
Q 009632          158 ----DILKTELRSIYTQLC-----------QD-----------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT  211 (530)
Q Consensus       158 ----~~~~~~l~~~l~~l~-----------~d-----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~  211 (530)
                          +.+...++|.+...+           .|           .+|.+|+.++.+++.++...++ ...+.++|.+.+.+
T Consensus       290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l  368 (852)
T 4fdd_A          290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELL  368 (852)
T ss_dssp             HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHh
Confidence                124567888887766           44           6789999999999999998874 55678999999999


Q ss_pred             cCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHH
Q 009632          212 QDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYV  286 (530)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~  286 (530)
                      .|+++.+|..|+.+++.+++..++  ..+.+.++|.+...++|+++.||..++.+++.++..++.   ..+...+++.+.
T Consensus       369 ~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~  448 (852)
T 4fdd_A          369 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL  448 (852)
T ss_dssp             TCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            999999999999999999987764  245677899999999999999999999999999987643   234567889999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH----HHHHHhHH
Q 009632          287 RLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLL  360 (530)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~  360 (530)
                      +.+.|+++.||.+|+.+++.+++..+..  .+.+.+++.+...+++.+......++++++.++...|.    ..+.+.++
T Consensus       449 ~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~  528 (852)
T 4fdd_A          449 KRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM  528 (852)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH
Confidence            9999999999999999999999887754  34466777777776666666666777888877755443    45778888


Q ss_pred             HHHH---HhhcCCChHHHHHHHHhhHHhhhhhchhHH--HhhHHHHHHHHhc-----------------CCChHHHHHHH
Q 009632          361 PIFL---SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE-----------------DRHWRVRLAII  418 (530)
Q Consensus       361 ~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~-----------------~~~~~~R~~~~  418 (530)
                      |.+.   ..+.|+++.+| .++++++.++..+|....  .+.+++.+.+.+.                 .++...|..++
T Consensus       529 p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l  607 (852)
T 4fdd_A          529 PPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL  607 (852)
T ss_dssp             HHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHH
Confidence            8888   45678878886 789999999998886421  2344443333321                 23567899999


Q ss_pred             HHHHHHHhhhChhhHH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh--hhhHHHHHhhccCCChHHH
Q 009632          419 EYIPLLASQLGVGFFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEMINNPHYLYR  492 (530)
Q Consensus       419 ~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~vr  492 (530)
                      ..++.+++.+|.++..    ..+++.+..++.|+.+.||..+..+++.++..++..+..  ..++|.+.+.++++++.+|
T Consensus       608 ~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~  687 (852)
T 4fdd_A          608 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC  687 (852)
T ss_dssp             HHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHH
T ss_pred             HHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHH
Confidence            9999999999865422    457999999999999999999999999999988865433  6689999999988899999


Q ss_pred             HHHHHHHHHHhhhcCh--HHHHhhHHHHHHhhccCCC
Q 009632          493 MTILRAISLLAPVMGS--EITCSRLLPVVINASKDRY  527 (530)
Q Consensus       493 ~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~~l~D~~  527 (530)
                      ..|++++|.++..+|.  ..+...+++.+...++++.
T Consensus       688 ~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~  724 (852)
T 4fdd_A          688 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN  724 (852)
T ss_dssp             HHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999998875  4567788888888887753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=9.4e-34  Score=313.68  Aligned_cols=509  Identities=13%  Similarity=0.164  Sum_probs=397.9

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCc--------
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV--------   81 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~--------   81 (530)
                      +..+++.+.++++..|..|+..|+.++..+++ ...+.+++.+.. +.|+++.+|..++.+++.++..++..        
T Consensus        50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~  128 (1230)
T 1u6g_C           50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA  128 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence            56788999999999999999999999988765 455677787777 77888999999999999998877643        


Q ss_pred             cchhcchhHHHhhhc-ccchHHHHHHHHHHHHHHhhcChhh--hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh
Q 009632           82 EHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (530)
Q Consensus        82 ~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~  158 (530)
                      .+++.++|.+...+. ++++.+|..|+.++..++...++..  ....+++.+.....+++..+|..++.+++.++...++
T Consensus       129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~  208 (1230)
T 1u6g_C          129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN  208 (1230)
T ss_dssp             HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence            267889999988887 4789999999999999997655421  2244666666677788889999999999999988876


Q ss_pred             HHHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc
Q 009632          159 ILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (530)
Q Consensus       159 ~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  235 (530)
                      ...+.+++.+...+. +.++.+|..++++++.++...++.  .+.+.++|.+.+.+.|+++.+|..++++++.++..+++
T Consensus       209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence            655555665555443 334689999999999999887762  34567999999999999999999999999999998876


Q ss_pred             h--hhhhccHHHHHHhcC-------------------------------------CCCHHHHHHHHHHHHHHHHHhCC--
Q 009632          236 Q--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP--  274 (530)
Q Consensus       236 ~--~~~~~~~~~l~~~~~-------------------------------------d~~~~vr~~~~~~l~~l~~~~~~--  274 (530)
                      +  .+.+.++|.+...+.                                     |..|.+|.+++.++..++...++  
T Consensus       289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~  368 (1230)
T 1u6g_C          289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML  368 (1230)
T ss_dssp             CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence            3  355666666654332                                     23588999999999999986554  


Q ss_pred             cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---------------------HHHHhhhhHhHhHhccCCcH
Q 009632          275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSSQ  333 (530)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~l~~~l~~~~~d~~~  333 (530)
                      ..+.+.++|.+...+.|.+++||..++.++..++...+.                     ..+.+.++|.+.+.++|++|
T Consensus       369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~  448 (1230)
T 1u6g_C          369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV  448 (1230)
T ss_dssp             HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence            234567889999999999999999999999999886642                     23456677777777899999


Q ss_pred             HHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCCh--HHHHHHHHhhHHhhhhhchhH---HHhhHHHHHHHHh
Q 009632          334 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA  406 (530)
Q Consensus       334 ~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~  406 (530)
                      ++|..++..++.++..++.  ..+.+.++|.+...|+|..+  .+|..++..+..+....|++.   +.+.++|.+...+
T Consensus       449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l  528 (1230)
T 1u6g_C          449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV  528 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence            9999999999988776542  24578899999999999875  899999999999988777653   4468999999999


Q ss_pred             cCCChHHHHHHHHHHHHHHhhhCh---------hhHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHhChhHHh--
Q 009632          407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWAM--  473 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~~l~~~~~~---------~~~~~~~~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--  473 (530)
                      +|++|++|..++.+++.+++.+|.         ..+.+.++|.++..+  .|.+..||..|+.++|.++...|..+..  
T Consensus       529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~  608 (1230)
T 1u6g_C          529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL  608 (1230)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred             cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence            999999999999999999988876         235678999999998  7889999999999999999987754321  


Q ss_pred             ----------------------------------------hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHh
Q 009632          474 ----------------------------------------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS  513 (530)
Q Consensus       474 ----------------------------------------~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~  513 (530)
                                                              ..++|.+...+.+++..+|.+++.+++.++...+.....+
T Consensus       609 ~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~  688 (1230)
T 1u6g_C          609 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAA  688 (1230)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHH
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHH
Confidence                                                    2234444445556677888888888888887776433334


Q ss_pred             hHHHHHH
Q 009632          514 RLLPVVI  520 (530)
Q Consensus       514 ~~~p~l~  520 (530)
                      ++.|.+.
T Consensus       689 ~v~~~l~  695 (1230)
T 1u6g_C          689 MIDAVLD  695 (1230)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            4444443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=3.9e-33  Score=297.41  Aligned_cols=478  Identities=17%  Similarity=0.148  Sum_probs=380.3

Q ss_pred             ccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhh-----
Q 009632           49 LIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL-----  122 (530)
Q Consensus        49 l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~-----  122 (530)
                      +.+.+.+ +.++++.+|..++.+++.+++.-+ +..++.+++.+...++++++.+|+.++.+++.+++..++...     
T Consensus        91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~-~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~  169 (852)
T 4fdd_A           91 IKSECLNNIGDSSPLIRATVGILITTIASKGE-LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD  169 (852)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTT-TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence            3333333 567888999999999999987643 567889999999999999999999999999999998876422     


Q ss_pred             --hhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-
Q 009632          123 --VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-  196 (530)
Q Consensus       123 --~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-  196 (530)
                        ...++|.+..+.+++++.+|..+..+++.+....+..   ....+++.+..++.|+++.||+.++.+|+.+++..++ 
T Consensus       170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~  249 (852)
T 4fdd_A          170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR  249 (852)
T ss_dssp             SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence              3447777777888889999999999998887765543   3567889999999999999999999999999987654 


Q ss_pred             -hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc----hhhhhccHHHHHHhc-----------CC--------
Q 009632          197 -AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFS-----------QD--------  252 (530)
Q Consensus       197 -~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~-----------~d--------  252 (530)
                       ..+.+.+++.+.+.+.|.++.||..|++.+..+++.-..    ..+...++|.+...+           .|        
T Consensus       250 ~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d  329 (852)
T 4fdd_A          250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD  329 (852)
T ss_dssp             HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence             234567899999999999999999999999998864211    223456777776665           34        


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHh
Q 009632          253 ---KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKEL  327 (530)
Q Consensus       253 ---~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~  327 (530)
                         .+|.+|.+++.+++.++...|+. ....++|.+.+.+.+++|.+|.+|+.+++.+++..+..  .+.+.++|.+...
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~  408 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQC  408 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence               56889999999999999998854 45678999999999999999999999999998866532  3457788889999


Q ss_pred             ccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHH
Q 009632          328 SSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAI  402 (530)
Q Consensus       328 ~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l  402 (530)
                      ++|+++.||..++.+++.++..++.   ..+...+++.+...++|+++.||..++.+++.+++..+..  .+.+.+++.+
T Consensus       409 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L  488 (852)
T 4fdd_A          409 LSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTL  488 (852)
T ss_dssp             TTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHH
Confidence            9999999999999999999876543   3456788999999999999999999999999999887754  2346788888


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhhhChhh----HHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHhChhHH--h
Q 009632          403 VELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEEFGPEWA--M  473 (530)
Q Consensus       403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~----~~~~~~~~l~---~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~  473 (530)
                      ...+++.+......++.+++.++...|...    +.+.++|.+.   ..+.|..+.+| .++++++.++..+|..+.  .
T Consensus       489 ~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~  567 (852)
T 4fdd_A          489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYC  567 (852)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHH
Confidence            888877777777788899999988777543    6677888887   45677778886 899999999999987543  2


Q ss_pred             hhhHHHHHhhc-----------------cCCChHHHHHHHHHHHHHhhhcChHH--H--HhhHHHHHHhhccCCCCC
Q 009632          474 QHITPQVLEMI-----------------NNPHYLYRMTILRAISLLAPVMGSEI--T--CSRLLPVVINASKDRYLN  529 (530)
Q Consensus       474 ~~i~~~l~~~~-----------------~d~~~~vr~~a~~~l~~i~~~~~~~~--~--~~~~~p~l~~~l~D~~~~  529 (530)
                      ..+++.+.+.+                 ..++.++|..++.+++.++..+|.+.  +  .+.++|.+..++.|+.+.
T Consensus       568 ~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  644 (852)
T 4fdd_A          568 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  644 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChh
Confidence            33444333322                 12467899999999999999998543  2  267899999999998654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=3.3e-32  Score=291.83  Aligned_cols=513  Identities=15%  Similarity=0.177  Sum_probs=408.6

Q ss_pred             HHHHHHHhcCh-hHHHHHHHhhcHHHHHHhhChH-----hhhhcccccccc-ccCC--chHHHHHHHHHHhcccccCCCc
Q 009632           11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV   81 (530)
Q Consensus        11 ~~~l~~~l~~~-~~~~R~~a~~~l~~~~~~~~~~-----~~~~~l~~~l~~-~~d~--~~~vr~~~~~~l~~~~~~~~~~   81 (530)
                      +..|++.+.++ ++..|..++..+..+.+.++++     ...+.+++.+.. +.++  +++||..+.++++.+...++..
T Consensus       136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~  215 (861)
T 2bpt_A          136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN  215 (861)
T ss_dssp             HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888 9999999999999998877643     234456666665 5565  7899999999999876654421


Q ss_pred             ----cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh---hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632           82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (530)
Q Consensus        82 ----~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~  154 (530)
                          ..+..+++.+...++++++.+|..+++++..++...++.   .+...+.+.+.....+.++.+|..++.++..++.
T Consensus       216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~  295 (861)
T 2bpt_A          216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                123567888888888999999999999999999876542   1221566667777788888999999988877654


Q ss_pred             CC--------------------ChHHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Q 009632          155 SA--------------------PDILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF  207 (530)
Q Consensus       155 ~~--------------------~~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l  207 (530)
                      ..                    .......++|.+...+.       |.+|.+|..+..+++.++..+++ ...+.+++.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l  374 (861)
T 2bpt_A          296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFV  374 (861)
T ss_dssp             HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHH
T ss_pred             HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHH
Confidence            32                    11244678888877665       34689999999999999998874 4567899999


Q ss_pred             HHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc----ccccc
Q 009632          208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMD  280 (530)
Q Consensus       208 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~  280 (530)
                      .+.+.++++.+|..|+.+++.++...+++   .+.+.++|.+...++|+++.||..++.+++.++..++.+    .+...
T Consensus       375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  454 (861)
T 2bpt_A          375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG  454 (861)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred             HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence            99999999999999999999999877632   345668888899999999999999999999999987642    34567


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---H---HHHhhhhHhHhHhcc--CCcHHHHHHHHHHHHhhccccCH
Q 009632          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK  352 (530)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~  352 (530)
                      ++|.+.+.+.|+ +.||..++.++..+++.++.   .   .+.+.+++.+...+.  |.++.+|..++++++.++...+.
T Consensus       455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence            899999999887 99999999999999988761   1   344666777777766  45589999999999999888775


Q ss_pred             H--HHHHhHHHHHHHhhcC---------------CChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHHhcCCCh-H
Q 009632          353 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R  412 (530)
Q Consensus       353 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~~~~~-~  412 (530)
                      +  .+...++|.+...+.+               ....+|..++.+++.++..+|.+  .+.+.+++.+...+++.++ .
T Consensus       534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  613 (861)
T 2bpt_A          534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF  613 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence            3  3456777777777653               24568899999999999988864  2346788888888888877 8


Q ss_pred             HHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCC
Q 009632          413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPH  488 (530)
Q Consensus       413 ~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~  488 (530)
                      +|..++.+++.++...|..+  +...++|.+...++++.+.+|..++.+++.++...|..+.  ...+++.+.+.+.+++
T Consensus       614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~  693 (861)
T 2bpt_A          614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN  693 (861)
T ss_dssp             THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence            99999999999999888765  4577999999999999999999999999999999886532  3677888888888765


Q ss_pred             --hHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccC
Q 009632          489 --YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD  525 (530)
Q Consensus       489 --~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D  525 (530)
                        ..+|..++.+++.++...|..  .+.+.++|.+...+..
T Consensus       694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~  734 (861)
T 2bpt_A          694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT  734 (861)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred             ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence              889999999999999988764  3578888888887663

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=8.4e-33  Score=306.07  Aligned_cols=515  Identities=12%  Similarity=0.153  Sum_probs=407.5

Q ss_pred             CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhC---hHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccch
Q 009632            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (530)
Q Consensus         9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~   84 (530)
                      +.+..+++++.++|+..|..|...|.+....-.   .+...+.+++.+.+ +.|+++++|.+++.+++.++..++ +.+.
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~-~~~~   84 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EYQV   84 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC-HHHH
Confidence            568899999999999999999988876532210   11223456666666 678899999999999999988766 4567


Q ss_pred             hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh--------hhhhhHHHHHHHHhcC-CccchhHHHHhHhhhhcCC
Q 009632           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPS  155 (530)
Q Consensus        85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~l~~~-~~~~~r~~~~~~l~~l~~~  155 (530)
                      ..+++.+...+.|+++.+|..|+.+++.++..+++.        .....++|.+.....+ +++.+|..+...++.+...
T Consensus        85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C           85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            788888888888899999999999999999988765        2466788888888884 7788999999999888754


Q ss_pred             CCh---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhh
Q 009632          156 APD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGK  231 (530)
Q Consensus       156 ~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~  231 (530)
                      .++   .+.+.+++.+...+.|+++.||..++.+++.++...+++. .+.+++.+.+.+.+. ++.+|..++++++.++.
T Consensus       165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~  243 (1230)
T 1u6g_C          165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR  243 (1230)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence            333   3678899999999999999999999999999998876644 345666666655543 35788899999999998


Q ss_pred             hcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCC----------------
Q 009632          232 LLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRD----------------  291 (530)
Q Consensus       232 ~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d----------------  291 (530)
                      ..|+  ..+.+.++|.+...++|.++.+|..++.+++.++..++.+.  +.+.++|.+++.+.+                
T Consensus       244 ~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~  323 (1230)
T 1u6g_C          244 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM  323 (1230)
T ss_dssp             HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence            8776  23467799999999999999999999999999999887653  456677777766531                


Q ss_pred             ---------------------CcHHHHHHHHHHHHHHHHhhCH--HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632          292 ---------------------NEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (530)
Q Consensus       292 ---------------------~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~  348 (530)
                                           ..|.||.+|+.++..++...+.  ..+.+.++|.+.....|+++.+|..++.++..+..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  403 (1230)
T 1u6g_C          324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK  403 (1230)
T ss_dssp             ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence                                 1257899999999999986664  45667888888888889999999999998887765


Q ss_pred             ccCH---------------------HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHH
Q 009632          349 LLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVEL  405 (530)
Q Consensus       349 ~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~  405 (530)
                      ..+.                     ..+.+.++|.+...++|+++.+|..++..++.++...+.  ....+.++|.+.+.
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~  483 (1230)
T 1u6g_C          404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS  483 (1230)
T ss_dssp             HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred             HhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHH
Confidence            4431                     234566778888889999999999999999999887542  12347889999999


Q ss_pred             hcCCCh--HHHHHHHHHHHHHHhhhChhh---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-------h--H
Q 009632          406 AEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-------E--W  471 (530)
Q Consensus       406 ~~~~~~--~~R~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-------~--~  471 (530)
                      +.++++  .+|..++..+..+....+.+.   +...++|.+...+.|+.+.||..++.+++.+++.+|+       .  .
T Consensus       484 L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~  563 (1230)
T 1u6g_C          484 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP  563 (1230)
T ss_dssp             TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred             HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence            999876  899999999999988777764   3456899999999999999999999999999998876       1  2


Q ss_pred             HhhhhHHHHHhhc--cCCChHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHhhccC
Q 009632          472 AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKD  525 (530)
Q Consensus       472 ~~~~i~~~l~~~~--~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~~l~D  525 (530)
                      +.+.++|.+...+  .|++..+|..++++++.++...|...  ..+.++|.+...+.+
T Consensus       564 ~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~  621 (1230)
T 1u6g_C          564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN  621 (1230)
T ss_dssp             HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc
Confidence            3467899988888  78899999999999999999887542  346666666665544

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=9.4e-32  Score=288.34  Aligned_cols=514  Identities=12%  Similarity=0.106  Sum_probs=409.6

Q ss_pred             HHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCC-chHHHHHHHHHHhcccccCCCc-----cch
Q 009632           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGV-----EHA   84 (530)
Q Consensus        12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~~~~~l~~~~~~~~~~-----~~~   84 (530)
                      ..+++.+.++++..|..+...++.++....|...|++++|.+.+ +.++ ++.+|..+..+++.+.+.++..     .+.
T Consensus        98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~  177 (861)
T 2bpt_A           98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence            36778899999999999999999999887676678899999988 6666 8899999999998887755432     356


Q ss_pred             hcchhHHHhhhccc--chHHHHHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh
Q 009632           85 HVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (530)
Q Consensus        85 ~~l~~~l~~l~~d~--~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~  158 (530)
                      ..+++.+...+.|+  +..||..+++++..++..+...    .....+++.+.....++++.+|..++.++..+....++
T Consensus       178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~  257 (861)
T 2bpt_A          178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            67788888888887  8999999999999986654322    12355788888888888999999999999887765443


Q ss_pred             ---HHHH-HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-------------------hhhHHHHHHHHHHhhcC--
Q 009632          159 ---ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------------AHLKTDIMSIFEDLTQD--  213 (530)
Q Consensus       159 ---~~~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~~~d--  213 (530)
                         .+.. .+++.+...+.|.+..+|..+++.+..++.....                   ......++|.+...+.+  
T Consensus       258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~  337 (861)
T 2bpt_A          258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence               2444 7888888899999999999999999998876421                   12336688888877763  


Q ss_pred             -----CchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHH
Q 009632          214 -----DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAY  285 (530)
Q Consensus       214 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l  285 (530)
                           +++.+|..+..++..++..+++ ...+.++|.+.+.+++.+|++|.+++.+++.++...+++   ...+.++|.+
T Consensus       338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l  416 (861)
T 2bpt_A          338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                 3457999999999999998884 456778999999999999999999999999998654422   1245688999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCH----HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC------HHHH
Q 009632          286 VRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG------KDAT  355 (530)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~------~~~~  355 (530)
                      .+.+.|+++.||..++.+++.++..++.    ..+.+.++|.+...+.|. +++|..++.++..++..++      -..+
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~  495 (861)
T 2bpt_A          417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF  495 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            9999999999999999999999988764    345577888888877776 9999999999998887654      1245


Q ss_pred             HHhHHHHHHHhhcC--CChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcC---------------CChHHHHH
Q 009632          356 IEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED---------------RHWRVRLA  416 (530)
Q Consensus       356 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~---------------~~~~~R~~  416 (530)
                      .+.+++.+...+++  .++.+|..++.+++.++...+.+.  +.+.++|.+.+.+.+               ....+|..
T Consensus       496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  575 (861)
T 2bpt_A          496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence            67888889999974  448899999999999998877542  234566666555432               24568899


Q ss_pred             HHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHH
Q 009632          417 IIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLY  491 (530)
Q Consensus       417 ~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~v  491 (530)
                      ++.+++.++..+|...  +...++|.+...+.+... .||..++.+++.++...|..+.  ...++|.+.+.++++++.+
T Consensus       576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v  655 (861)
T 2bpt_A          576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV  655 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHH
Confidence            9999999999888753  467899999999988777 8999999999999999887643  3678999999999999999


Q ss_pred             HHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCCC
Q 009632          492 RMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRY  527 (530)
Q Consensus       492 r~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~~  527 (530)
                      |..++.+++.++..+|..  .+.+.++|.+...+.|+.
T Consensus       656 r~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~  693 (861)
T 2bpt_A          656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN  693 (861)
T ss_dssp             HHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence            999999999999988753  356778888888887753

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=4.3e-30  Score=275.96  Aligned_cols=514  Identities=15%  Similarity=0.172  Sum_probs=398.8

Q ss_pred             HHHHHHHhcCh--hHHHHHHHhhcHHHHHHhhChHh---hhhcccccccc-ccCC--chHHHHHHHHHHhcccccCCCc-
Q 009632           11 IAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV-   81 (530)
Q Consensus        11 ~~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~-~~d~--~~~vr~~~~~~l~~~~~~~~~~-   81 (530)
                      +..+++.+.++  ++..|..++..++.+.+.++++.   ..+.+++.+.. +.++  ++.+|..+..+++.++..++.. 
T Consensus       130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~  209 (876)
T 1qgr_A          130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  209 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778888888  99999999999999988765432   23455666665 5554  6899999999999887755421 


Q ss_pred             ---cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh---hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCC
Q 009632           82 ---EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (530)
Q Consensus        82 ---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~  155 (530)
                         .....+++.+...+++++..+|..+++++..++...++.   .+...+++.+.....++++.+|..++..+..+...
T Consensus       210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~  289 (876)
T 1qgr_A          210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence               112347777888888889999999999999999876542   22225677777777788888999888777665432


Q ss_pred             C----------------------C--hHHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009632          156 A----------------------P--DILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIM  204 (530)
Q Consensus       156 ~----------------------~--~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~  204 (530)
                      .                      .  ....+.+++.+...+.       |.+|.+|+++..+++.++...++ ...+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l  368 (876)
T 1qgr_A          290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL  368 (876)
T ss_dssp             HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred             HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHH
Confidence            1                      0  1134667777777663       46799999999999999998874 4567899


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc----cc
Q 009632          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT  277 (530)
Q Consensus       205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~  277 (530)
                      |.+.+.+.|+++.+|..|+.+++.++...+++   .+.+.++|.+...++|+++.||..++.+++.++..++..    .+
T Consensus       369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T 1qgr_A          369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence            99999999999999999999999999887742   355678999999999999999999999999999987642    34


Q ss_pred             ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC----------------HHHHHhhhhHhHhHhccCC---cHHHHHH
Q 009632          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKELSSDS---SQHVRSA  338 (530)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----------------~~~~~~~l~~~l~~~~~d~---~~~vr~~  338 (530)
                      ...+++.+...+.|+ +.||..++.++..++...+                ...+.+.++|.+...+.+.   ++.+|..
T Consensus       449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~  527 (876)
T 1qgr_A          449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence            567889999999886 8999999999999998754                1234567788887776653   4689999


Q ss_pred             HHHHHHhhccccCH--HHHHHhHHHHHHHhhcC-----------CC----hHHHHHHHHhhHHhhhhhc-hh--HHHhhH
Q 009632          339 LASVIMGMAPLLGK--DATIEQLLPIFLSLLKD-----------EF----PDVRLNIISKLDQVNQVIG-ID--LLSQSL  398 (530)
Q Consensus       339 ~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-----------~~----~~vr~~a~~~l~~l~~~~~-~~--~~~~~l  398 (530)
                      ++++++.++...|.  ..+...++|.+...+.+           .+    +.+|..++.+++.++..+| .+  .+.+.+
T Consensus       528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l  607 (876)
T 1qgr_A          528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV  607 (876)
T ss_dssp             HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence            99999999887774  23456677777766542           22    5678999999999998888 33  234678


Q ss_pred             HHHHHHHhcCCC--hHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhChhHH-
Q 009632          399 LPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEWA-  472 (530)
Q Consensus       399 ~~~l~~~~~~~~--~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~-  472 (530)
                      +|.+...+++.+  +.+|..++.+++.++...|..+  +...++|.+...+.+. .+.||..++.+++.++...|..+. 
T Consensus       608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~  687 (876)
T 1qgr_A          608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP  687 (876)
T ss_dssp             HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            888888888764  6899999999999999887654  4577899999999987 899999999999999999886543 


Q ss_pred             -hhhhHHHHHhhccC--CChHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHhhccCC
Q 009632          473 -MQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDR  526 (530)
Q Consensus       473 -~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~~l~D~  526 (530)
                       ...+++.+.+.+++  .+..+|..++.+++.++...|.++  +.+.++|.+.+.+.++
T Consensus       688 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~  746 (876)
T 1qgr_A          688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQ  746 (876)
T ss_dssp             HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhcc
Confidence             36788888888876  467899999999999999888653  5778888888877654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=2e-29  Score=270.88  Aligned_cols=516  Identities=13%  Similarity=0.131  Sum_probs=376.2

Q ss_pred             HHHHHHhcCh--hHHHHHHHhhcHHHHHHhhChHh----hhhcccccccc-ccCCchHHHHHHHHHHhcccccCCC--cc
Q 009632           12 AVLIDELKND--DIQLRLNSIRRLSTIARALGEER----TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG--VE   82 (530)
Q Consensus        12 ~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~--~~   82 (530)
                      ..+.+.+.++  ++..|..|++.+..++..+++..    ..+.+++.+.. +.++++++|..+..+++.++...+.  ..
T Consensus       175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~  254 (876)
T 1qgr_A          175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET  254 (876)
T ss_dssp             HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3456667776  68899999999998765543221    11245666666 6677889999999999888764432  12


Q ss_pred             chh-cchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh--------------------hh---hhhhHHHHHHHHhc---
Q 009632           83 HAH-VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--------------------SD---LVDWYIPLVKRLAA---  135 (530)
Q Consensus        83 ~~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------------------~~---~~~~l~~~l~~l~~---  135 (530)
                      +.. .+++.+.....+.++.+|..+++.+..+++....                    ..   ....++|.+...+.   
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~  334 (876)
T 1qgr_A          255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD  334 (876)
T ss_dssp             HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence            334 6677776677788899999999999988765210                    01   11234555544442   


Q ss_pred             ----CCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHH
Q 009632          136 ----GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFE  208 (530)
Q Consensus       136 ----~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~  208 (530)
                          +++|.+|..+..+++.++...++...+.+++.+...+.|++|.+|.+++.+++.++...+++   .+.+.++|.+.
T Consensus       335 ~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~  414 (876)
T 1qgr_A          335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI  414 (876)
T ss_dssp             SSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence                34688999999999988877777778889999999999999999999999999998876632   34567899999


Q ss_pred             HhhcCCchhHHHHHHHHHHHHhhhcCc----hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC-------C---
Q 009632          209 DLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG-------P---  274 (530)
Q Consensus       209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-------~---  274 (530)
                      ..+.|+++.||..|+.+++.++...++    ..+...+++.+...+.|. +.||..++.+++.++...+       +   
T Consensus       415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~  493 (876)
T 1qgr_A          415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEE  493 (876)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            999999999999999999999988764    245677888888888885 8999999999999998765       1   


Q ss_pred             ------cccccchHHHHHHhcCCC---cHHHHHHHHHH------------------------------------------
Q 009632          275 ------EPTRMDLVPAYVRLLRDN---EAEVRIAAAGK------------------------------------------  303 (530)
Q Consensus       275 ------~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~------------------------------------------  303 (530)
                            ..+.+.++|.+.+.+.+.   +..+|..++++                                          
T Consensus       494 ~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d  573 (876)
T 1qgr_A          494 PATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSD  573 (876)
T ss_dssp             CCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTH
T ss_pred             ccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence                  123456778777777653   23455444444                                          


Q ss_pred             --------------HHHHHHhhC-HH--HHHhhhhHhHhHhccCCc--HHHHHHHHHHHHhhccccCHH--HHHHhHHHH
Q 009632          304 --------------VTKFCRILN-PE--LAIQHILPCVKELSSDSS--QHVRSALASVIMGMAPLLGKD--ATIEQLLPI  362 (530)
Q Consensus       304 --------------l~~~~~~~~-~~--~~~~~l~~~l~~~~~d~~--~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~  362 (530)
                                    +..++..+| ..  .+.+.++|.+...+++.+  +.+|..++..++.++...|..  .+...++|.
T Consensus       574 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  653 (876)
T 1qgr_A          574 RIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPF  653 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                          444444444 21  223445566666666554  578999999998888766542  346778899


Q ss_pred             HHHhhcCC-ChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhChhh--HHH
Q 009632          363 FLSLLKDE-FPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF--FDD  435 (530)
Q Consensus       363 l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~~~--~~~  435 (530)
                      +...+.+. ++.+|..++.+++.++...|...  ..+.+++.+.+.+++  .+..+|..++.+++.++..+|.++  +.+
T Consensus       654 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~  733 (876)
T 1qgr_A          654 LGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE  733 (876)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred             HHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHH
Confidence            99999987 89999999999999998887532  246788888888776  467899999999999999888764  467


Q ss_pred             HHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHHhChh---------H---HhhhhHHHHHhhccCC--ChH
Q 009632          436 KLGALCMQWLQDKV-----------YSIRDAAANNLKRLAEEFGPE---------W---AMQHITPQVLEMINNP--HYL  490 (530)
Q Consensus       436 ~~~~~l~~~l~d~~-----------~~Vr~~a~~~l~~l~~~~~~~---------~---~~~~i~~~l~~~~~d~--~~~  490 (530)
                      .++|.+.+.+.++.           ..+|..++++++.++..+|..         .   +...+++.+.....|+  +..
T Consensus       734 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~  813 (876)
T 1qgr_A          734 VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDG  813 (876)
T ss_dssp             HHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHH
T ss_pred             HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence            78898888887542           389999999999998887531         1   1134555555555777  779


Q ss_pred             HHHHHHHHHHHHhhhcCh-H--HH-HhhHHHHHHh-hccCCCC
Q 009632          491 YRMTILRAISLLAPVMGS-E--IT-CSRLLPVVIN-ASKDRYL  528 (530)
Q Consensus       491 vr~~a~~~l~~i~~~~~~-~--~~-~~~~~p~l~~-~l~D~~~  528 (530)
                      +|..|+.+++.++...|. .  .+ .+.++|.+.. .+.|+.+
T Consensus       814 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~  856 (876)
T 1qgr_A          814 VVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTN  856 (876)
T ss_dssp             HHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCH
Confidence            999999999999999887 3  22 4556776766 8877754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.94  E-value=8.8e-24  Score=209.83  Aligned_cols=312  Identities=15%  Similarity=0.130  Sum_probs=183.1

Q ss_pred             CCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHhhh
Q 009632          155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKL  232 (530)
Q Consensus       155 ~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~  232 (530)
                      .++++.+..+...+...+.++++.+ ..++.+++.++....+...++.++|.+.+.+.++  ++.+|..++.++..+++.
T Consensus        82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~  160 (462)
T 1ibr_B           82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD  160 (462)
T ss_dssp             TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence            3455566667777777777777777 7777778877776544434567777777777777  777888888888877765


Q ss_pred             cCc---hhhhhccHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCC----cccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632          233 LEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRIAAAGK  303 (530)
Q Consensus       233 ~~~---~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (530)
                      +.+   ..+.+.+++.+...++|.  ++.||..++++++.+...+..    ......+++.+.+.+.++++++|..++++
T Consensus       161 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~  240 (462)
T 1ibr_B          161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN  240 (462)
T ss_dssp             SCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             CCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            532   233455677777777776  677888887777765433221    11112356666666777777788888888


Q ss_pred             HHHHHHhhCHH--HHHh-hhhHhHhHhccCCcHHHHHHHHHHHHhhcccc----------------------C-HHHHHH
Q 009632          304 VTKFCRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLL----------------------G-KDATIE  357 (530)
Q Consensus       304 l~~~~~~~~~~--~~~~-~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----------------------~-~~~~~~  357 (530)
                      +..++...+..  .+.+ .+++.+....+|.+..+|..+++.+..++...                      + ...+..
T Consensus       241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (462)
T 1ibr_B          241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ  320 (462)
T ss_dssp             HHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence            77777655432  2233 55666655666777777777777766665321                      0 011234


Q ss_pred             hHHHHHHHhhcC-------CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh
Q 009632          358 QLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  430 (530)
Q Consensus       358 ~l~~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~  430 (530)
                      .++|.++..+.+       +++.+|..+..+++.++..+| +...+.++|.+...+++++|++|.+++.+++.++...+.
T Consensus       321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~  399 (462)
T 1ibr_B          321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP  399 (462)
T ss_dssp             HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred             hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence            455555555532       234555555555555555555 233344555555555555555555555555555543331


Q ss_pred             hh---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632          431 GF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (530)
Q Consensus       431 ~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  468 (530)
                      +.   ....++|.+...+.|+++.||..|+.+++.++..++
T Consensus       400 ~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             TTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            11   123345555555555555555555555555555444

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.94  E-value=7.2e-24  Score=215.23  Aligned_cols=473  Identities=15%  Similarity=0.121  Sum_probs=337.0

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcch
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~   88 (530)
                      .+..+.+.+++++...|..+++.+-.+ ..+|.+ . ..+.+.+.. +.+++.++|+.+...+..+++.  .++....+.
T Consensus        14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d-~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~   88 (591)
T 2vgl_B           14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKD-V-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV   88 (591)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCC-C-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCC-h-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence            477889999999999998888777643 344542 2 233344434 6678899999999888887662  234445566


Q ss_pred             hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHH-HHHHHH
Q 009632           89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-TELRSI  167 (530)
Q Consensus        89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~-~~l~~~  167 (530)
                      +.+...++|+++.+|..|+.+++.+.    .....+.+.|.+..++.|+++.+|..|+.++..++...++... ..+++.
T Consensus        89 n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~  164 (591)
T 2vgl_B           89 NSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS  164 (591)
T ss_dssp             HHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHH
Confidence            77777788999999999988887774    3345566788888888999999999999999988875544332 368899


Q ss_pred             HHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632          168 YTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (530)
Q Consensus       168 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  244 (530)
                      +.++++|+++.||..|+.+|..++...++.   ......++.+.+.+.+.++-.+...++.+..++..  .......+++
T Consensus       165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~  242 (591)
T 2vgl_B          165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICE  242 (591)
T ss_dssp             HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHH
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHH
Confidence            999999999999999999999988764432   12234556666666777777777777766554422  1223456888


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhh
Q 009632          245 VIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  319 (530)
Q Consensus       245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  319 (530)
                      .+...+++.++.|+..+++++..+...+  .++..   ...+.+.+..++ ++++++|..++.++..+....+ +.+.+.
T Consensus       243 ~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~  320 (591)
T 2vgl_B          243 RVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQE  320 (591)
T ss_dssp             HHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTC
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHH
Confidence            8888889999999999999998876533  11211   124556666555 4778999999999999987532 211111


Q ss_pred             hhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHH
Q 009632          320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (530)
Q Consensus       320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  399 (530)
                      + ..+.... +.++.+|..+++.+..++..-+    ...+++.+...+.+.+.++|..++.+++.++..++..  .+.++
T Consensus       321 ~-~~~~~~~-~d~~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v  392 (591)
T 2vgl_B          321 I-KVFFVKY-NDPIYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCV  392 (591)
T ss_dssp             T-TTTSCCT-TSCHHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHH
T ss_pred             H-Hhheecc-CChHHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHH
Confidence            1 1121112 3348999999999888875543    3456777778888889999999999999988876532  35678


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhChhHHhhhhHH
Q 009632          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (530)
Q Consensus       400 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~  478 (530)
                      +.+.+++.+....++..++.++..+....+..  ...+++.+...+. +..+.+|..++.++|+.......   ...++.
T Consensus       393 ~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~  467 (591)
T 2vgl_B          393 STLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLE  467 (591)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHH
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHH
Confidence            88888888888888888888888887654432  1234555666665 46678899999998887654432   245666


Q ss_pred             HHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632          479 QVLEMINNPHYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       479 ~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      .+.+.+.+.+..||..++.++.++....+.
T Consensus       468 ~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~  497 (591)
T 2vgl_B          468 SFLEGFHDESTQVQLTLLTAIVKLFLKKPS  497 (591)
T ss_dssp             HHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence            666667777888999999999988876653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.93  E-value=1e-23  Score=209.28  Aligned_cols=323  Identities=15%  Similarity=0.193  Sum_probs=255.2

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCCc--
Q 009632          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE--  275 (530)
Q Consensus       200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~--  275 (530)
                      ...+...+.+.+.++++.+ ..+..+++.++....+...++.++|.+...+++.  ++.+|..++.+++.+++....+  
T Consensus        88 ~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~  166 (462)
T 1ibr_B           88 RREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL  166 (462)
T ss_dssp             HHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence            4556667777788888888 8899999999988655546788999999999888  8999999999999999876322  


Q ss_pred             -ccccchHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH----HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632          276 -PTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (530)
Q Consensus       276 -~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~  348 (530)
                       ...+.+++.+.+.+.|+  ++.||..+++++..+...++..    .+.+.+++.+.....+.++.+|..+++.+..++.
T Consensus       167 ~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~  246 (462)
T 1ibr_B          167 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS  246 (462)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence             23456889999999988  7999999999999876543321    1224467777778889999999999999999886


Q ss_pred             ccCHH--HHHH-hHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--------------------h---hHHHhhHHHHH
Q 009632          349 LLGKD--ATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------------------I---DLLSQSLLPAI  402 (530)
Q Consensus       349 ~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------------------~---~~~~~~l~~~l  402 (530)
                      ..+..  .+.. .+++.+...++|.++.+|..++..+..++...-                    .   ....+.++|.+
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l  326 (462)
T 1ibr_B          247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  326 (462)
T ss_dssp             HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence            65431  2345 788888899999999999999999988876530                    0   01125677887


Q ss_pred             HHHhc-------CCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---HH
Q 009632          403 VELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WA  472 (530)
Q Consensus       403 ~~~~~-------~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~  472 (530)
                      .+.+.       +.+|.+|..+..+++.++..+| +.....++|.+...+.|+++.+|.+|+.++|.++...+++   ..
T Consensus       327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~  405 (462)
T 1ibr_B          327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL  405 (462)
T ss_dssp             HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT
T ss_pred             HHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            77664       3469999999999999999998 4556789999999999999999999999999998755422   12


Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChH----HHHhhHHHHHHhhcc
Q 009632          473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASK  524 (530)
Q Consensus       473 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~~~p~l~~~l~  524 (530)
                      ...++|.+.+.++|+++.||..|++++++++...+..    .+.+.++|.+...++
T Consensus       406 l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~  461 (462)
T 1ibr_B          406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS  461 (462)
T ss_dssp             TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence            3678999999999999999999999999999988763    356667777766553

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.93  E-value=1.2e-22  Score=206.25  Aligned_cols=476  Identities=13%  Similarity=0.108  Sum_probs=346.4

Q ss_pred             CCCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCc
Q 009632            3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV   81 (530)
Q Consensus         3 ~~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~   81 (530)
                      .|.+.=..+..+++.+.+++...|+.+..++..++.. .++.. ..+++.+.. +.++++.+|..|..+++++.    .+
T Consensus        43 ~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~  116 (591)
T 2vgl_B           43 VGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VD  116 (591)
T ss_dssp             TTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SG
T ss_pred             CCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hH
Confidence            3444444577788899999999999998888877654 23322 234455555 88999999999999998874    46


Q ss_pred             cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH--
Q 009632           82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--  159 (530)
Q Consensus        82 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~--  159 (530)
                      +....+.+.+..++.|+++.||..|+.++..+....+.......+.+.+..++.|+++.++..|..+++.+....++.  
T Consensus       117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence            778888898999999999999999999999999855432222357889999999999999999999999988765422  


Q ss_pred             --HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC--c
Q 009632          160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--P  235 (530)
Q Consensus       160 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~  235 (530)
                        .....++.+...+.+.++..+...+..++.+...  .+.....+++.+..++.+.++.|+..|+.++..+....+  +
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~  274 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS  274 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence              2234455555555567777787777766554421  123346788888899999999999999999999876542  2


Q ss_pred             hh---hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632          236 QD---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (530)
Q Consensus       236 ~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  312 (530)
                      +.   ....+.+.+..+. ++++.+|..++.+++.+....+.-. ...+- .+....+|+ +.||..++..+..++..-+
T Consensus       275 ~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~-~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~n  350 (591)
T 2vgl_B          275 DYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEIL-KQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQAN  350 (591)
T ss_dssp             BSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTT-TTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSST
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHH-HHHHH-hheeccCCh-HHHHHHHHHHHHHHCChhh
Confidence            21   1234555555555 4788999999999999988754322 22222 222233455 8999999988887764322


Q ss_pred             HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 009632          313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (530)
Q Consensus       313 ~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  392 (530)
                          .+.+++.+...+++.++.+|..++..++.++..++.  ....+++.+..++.+....++..++..+..+...... 
T Consensus       351 ----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-  423 (591)
T 2vgl_B          351 ----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-  423 (591)
T ss_dssp             ----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-
T ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-
Confidence                245677777888899999999999999999987642  3456789999999999999999999988888765432 


Q ss_pred             HHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH
Q 009632          393 LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  471 (530)
Q Consensus       393 ~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~  471 (530)
                       ..+.+++.+.+.+.+ ..+.+|..+++++|..+.....   ...++..+.+.+.+....||..++.++..+....+...
T Consensus       424 -~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~  499 (591)
T 2vgl_B          424 -KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET  499 (591)
T ss_dssp             -SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT
T ss_pred             -hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH
Confidence             124677777777764 5688999999999998766543   23556666666677889999999999999987654321


Q ss_pred             HhhhhHHHHHhh-ccC-CChHHHHHHHHHHHHHh
Q 009632          472 AMQHITPQVLEM-INN-PHYLYRMTILRAISLLA  503 (530)
Q Consensus       472 ~~~~i~~~l~~~-~~d-~~~~vr~~a~~~l~~i~  503 (530)
                        ...+..+.+. ..| .|.+||..|...+.-+.
T Consensus       500 --~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~  531 (591)
T 2vgl_B          500 --QELVQQVLSLATQDSDNPDLRDRGYIYWRLLS  531 (591)
T ss_dssp             --HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred             --HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence              2344444444 355 68899999998877653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=4e-22  Score=208.35  Aligned_cols=494  Identities=12%  Similarity=0.047  Sum_probs=340.0

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCcc-c--hh
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE-H--AH   85 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~-~--~~   85 (530)
                      .+..+++.|.+++...|..+.+.+......    ......+|.|.. +.++++.+|..++.+|+.++..-.... .  ..
T Consensus       116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~----~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~  191 (780)
T 2z6g_A          116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP  191 (780)
T ss_dssp             ----------CCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCH
T ss_pred             cHHHHHHHhcCccHHHHHHHHHHHHhhhHH----HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhcc
Confidence            357889999999998888888777654321    222344555555 457789999999999999876321110 0  12


Q ss_pred             cchhHHHhhhc-ccchHHHHHHHHHHHHHHhhcCh--hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---
Q 009632           86 VLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---  159 (530)
Q Consensus        86 ~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---  159 (530)
                      ..++.|..++. +++..+|..|+.+|..++..-..  .......+|.+..++.+++..+|..++.++..++..-...   
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~  271 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA  271 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence            34555555554 45899999999999998764221  1123347888888888888899999999999887653322   


Q ss_pred             H-HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhhhcC
Q 009632          160 L-KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDS-VRLLAVEGCAALGKLLE  234 (530)
Q Consensus       160 ~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~-vr~~a~~~l~~l~~~~~  234 (530)
                      . ....++.+..++.++++.++..++.++..++.....   .......++.+.+++.+.++. .+..+..++..++..-.
T Consensus       272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~  351 (780)
T 2z6g_A          272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS  351 (780)
T ss_dssp             HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence            2 346889999999999999999999999988742111   112234677888888877654 55567778887775322


Q ss_pred             c--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632          235 P--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (530)
Q Consensus       235 ~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  312 (530)
                      .  ......++|.+..++.+.+..++..++.++..++...........++|.+.+++.++++++|..|+.+|..++..-.
T Consensus       352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~  431 (780)
T 2z6g_A          352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  431 (780)
T ss_dssp             HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            1  11234578899999999999999999999999987655444456789999999999999999999999999876321


Q ss_pred             HH---HHHhhhhHhHhHhccC-Cc-HHHHHHHHHHHHhhccccCHH------HHHHhHHHHHHHhhcCCCh-HHHHHHHH
Q 009632          313 PE---LAIQHILPCVKELSSD-SS-QHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEFP-DVRLNIIS  380 (530)
Q Consensus       313 ~~---~~~~~l~~~l~~~~~d-~~-~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~-~vr~~a~~  380 (530)
                      ..   ......++.+.+++.+ .+ ..+|..++.+++.++...+..      ......+|.+..+|.+++. .+|..++.
T Consensus       432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~  511 (780)
T 2z6g_A          432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG  511 (780)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence            11   1113456666666654 33 489999999999997644321      1223568999999998764 99999999


Q ss_pred             hhHHhhhhhchh--HHHhhHHHHHHHHhcCCCh----------------------HHHHHHHHHHHHHHhhhChh--hHH
Q 009632          381 KLDQVNQVIGID--LLSQSLLPAIVELAEDRHW----------------------RVRLAIIEYIPLLASQLGVG--FFD  434 (530)
Q Consensus       381 ~l~~l~~~~~~~--~~~~~l~~~l~~~~~~~~~----------------------~~R~~~~~~l~~l~~~~~~~--~~~  434 (530)
                      +++++...-...  .....++|.|.+++.+.++                      .++..++.+|..++......  ...
T Consensus       512 aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~  591 (780)
T 2z6g_A          512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG  591 (780)
T ss_dssp             HHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence            999997532111  1124567777777655433                      35666777777765321111  112


Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--ChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      ...+|.+..++.++..+||..|+.+|+.+...-  .........++.|.+++++++..+|..|..++.++...-+
T Consensus       592 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            346889999999999999999999999886321  1111224578899999999999999999999999988665

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.91  E-value=6.7e-22  Score=195.52  Aligned_cols=340  Identities=11%  Similarity=0.047  Sum_probs=256.6

Q ss_pred             hhHHHhhhcccchHHHHHHHHHHHHHHhh-cCh---hhhhh-hHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChH--
Q 009632           88 LPPLETLCTVEETCVRDKAVESLCRIGSQ-MRE---SDLVD-WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI--  159 (530)
Q Consensus        88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~-~~~---~~~~~-~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~--  159 (530)
                      ++.+...++++++.+|..|+.+|..++.. ..+   ..... .++|.+..++.++ ++.+|..++.+++.++....+.  
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            67777777888899999999999998652 221   12233 5778877777777 7889999999999888754432  


Q ss_pred             --HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhc
Q 009632          160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLL  233 (530)
Q Consensus       160 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~  233 (530)
                        ....++|.+..++.++++.+|..++.+|+.++...+.   ......+++.+.+++.+ .+..+|..++.++..++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence              2246889999999999999999999999999875322   12234578889999985 68899999999999999754


Q ss_pred             Cc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 009632          234 EP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  307 (530)
Q Consensus       234 ~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  307 (530)
                      ++   ......++|.+..++.+.++.+|..++.+++.++....+   ......++|.+.+++.++++++|..++.+++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            22   234467899999999999999999999999988753111   111245789999999999999999999999998


Q ss_pred             HHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHh
Q 009632          308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK  381 (530)
Q Consensus       308 ~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  381 (530)
                      +...+..   .....++|.+..++.++++.+|..++.+++.++.....   ......++|.+..+++++++.+|..++.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            7643221   12235788888888888999999999999988753221   11224678888888888888899999888


Q ss_pred             hHHhhhhhchhH----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 009632          382 LDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (530)
Q Consensus       382 l~~l~~~~~~~~----~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~  427 (530)
                      +++++....++.    ....++|.|..++.++++.+|..++.++..++..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            888876433222    2245788888888888888888888888888763

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.91  E-value=1.7e-21  Score=196.33  Aligned_cols=346  Identities=12%  Similarity=0.069  Sum_probs=268.2

Q ss_pred             HHHHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--
Q 009632          162 TELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--  235 (530)
Q Consensus       162 ~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--  235 (530)
                      ..++|.+..++.++ ++.+|..++.+|+.++...+.   .......+|.+.+++.++++.+|..|+.+|..++..-+.  
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence            34678888888887 899999999999998863221   122345788899999988999999999999999864221  


Q ss_pred             -hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632          236 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (530)
Q Consensus       236 -~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  311 (530)
                       ......++|.+..++.+.++.+|..++.+|+.++..-++   ......++|.+..++.+++++++..++.+|..++...
T Consensus       209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  288 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  288 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence             112346889999999998999999999999999864311   1224578999999999999999999999999998642


Q ss_pred             CH--H-HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHh
Q 009632          312 NP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (530)
Q Consensus       312 ~~--~-~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  385 (530)
                      +.  . .....++|.+..++.+.++.+|..++.+++.++...+.   ......++|.+..+|.++++.+|..|+.+++.+
T Consensus       289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l  368 (530)
T 1wa5_B          289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI  368 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            21  1 22246788899999999999999999999999864321   122346889999999999999999999999998


Q ss_pred             hhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh--hh----HHHHHHHHHHHHhcCCcHHHHHHH
Q 009632          386 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GF----FDDKLGALCMQWLQDKVYSIRDAA  456 (530)
Q Consensus       386 ~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~--~~----~~~~~~~~l~~~l~d~~~~Vr~~a  456 (530)
                      +.....   ..+...++|.+..++.++++.+|..++.+++.++...+.  +.    ....++|.+..++.++++.||..+
T Consensus       369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  448 (530)
T 1wa5_B          369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT  448 (530)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence            753211   112246889999999999999999999999999876443  22    223478999999999999999999


Q ss_pred             HHHHHHHHHHhChh--------------HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632          457 ANNLKRLAEEFGPE--------------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       457 ~~~l~~l~~~~~~~--------------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      +.+|..++......              ......++.+..+.++++..++..|..++.++...-.
T Consensus       449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            99999998764321              1113457888889999999999999999998876533

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.91  E-value=2.7e-21  Score=191.11  Aligned_cols=378  Identities=12%  Similarity=0.037  Sum_probs=290.1

Q ss_pred             HHHHHHHhcCCccchhHHHHhHhhhhcC-CCCh---H-HHH-HHHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhhcc---
Q 009632          127 IPLVKRLAAGEWFTARVSACGLFHIAYP-SAPD---I-LKT-ELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---  196 (530)
Q Consensus       127 ~~~l~~l~~~~~~~~r~~~~~~l~~l~~-~~~~---~-~~~-~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~---  196 (530)
                      ++.+...++++++.+|..+...+..+.. ...+   . ... .++|.+.+++.++ ++.+|..++.++..++..-+.   
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4555556677788899999998887643 1121   1 223 6889999988888 899999999999999863222   


Q ss_pred             hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHh
Q 009632          197 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAV  272 (530)
Q Consensus       197 ~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~  272 (530)
                      ......++|.+.+++.++++.+|..|+.+|+.++...+.   ......++|.+..++++ .++.+|..++.+++.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            222356899999999999999999999999999875322   11234688999998885 78999999999999998653


Q ss_pred             CC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhh
Q 009632          273 GP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGM  346 (530)
Q Consensus       273 ~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l  346 (530)
                      ++   ......++|.+.+++.+++++++..++.++..++......   .....++|.+..++.++++.+|..++..++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            11   1223678999999999999999999999999998643211   22345788888899999999999999999999


Q ss_pred             ccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-HHHhhHHHHHHHHhcCCChHHHHHHHHH
Q 009632          347 APLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEY  420 (530)
Q Consensus       347 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~~~~~~~~R~~~~~~  420 (530)
                      +...+..   .....++|.+..+++++++.+|..++.+++.++.....  . .+...++|.+..++.++++.+|..++.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            8654321   12235889999999999999999999999999752211  1 1224788999999999999999999999


Q ss_pred             HHHHHhhhChhh----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH---------Hh-----hhhHHHHHh
Q 009632          421 IPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---------AM-----QHITPQVLE  482 (530)
Q Consensus       421 l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---------~~-----~~i~~~l~~  482 (530)
                      ++.++...+++.    +...++|.+..++.++++.||..++.+++.++...+...         +.     ...++.+..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  421 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF  421 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence            999987544332    234589999999999999999999999999987543210         11     123677778


Q ss_pred             hccCCChHHHHHHHHHHHHHhh
Q 009632          483 MINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       483 ~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      +.+++++.+|..+..++.++..
T Consensus       422 l~~~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          422 LQSHENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHHHCC
Confidence            8888999999999999998764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.90  E-value=1.3e-20  Score=193.94  Aligned_cols=470  Identities=11%  Similarity=0.029  Sum_probs=307.5

Q ss_pred             cCCchHHHHHHHHHHhcccccCCCcc-c--hhcchhHHHhhhc-ccchHHHHHHHHHHHHHHhhcCh--hhhhhhHHHHH
Q 009632           57 NDDDDEVLLAMAEELGVFIPYVGGVE-H--AHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLV  130 (530)
Q Consensus        57 ~d~~~~vr~~~~~~l~~~~~~~~~~~-~--~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l  130 (530)
                      .++++.+|..++.+|++++..-.... .  ....++.|...+. +++..+|..|+.+|..++..-..  .......+|.+
T Consensus        24 ~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~L  103 (644)
T 2z6h_A           24 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL  103 (644)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHH
Confidence            34555555555555555544211000 0  0122333433333 33666777777777766543211  01122356666


Q ss_pred             HHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHH
Q 009632          131 KRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDI  203 (530)
Q Consensus       131 ~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l  203 (530)
                      ..+++++++.+|..++..+..++......    .....++.+..++.+++++++..++.+|..++...+.   .......
T Consensus       104 v~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~  183 (644)
T 2z6h_A          104 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG  183 (644)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCC
Confidence            66666666677777777776665443221    1245788888888888899999999999888853221   1223356


Q ss_pred             HHHHHHhhcCCc-hhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccc
Q 009632          204 MSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD  280 (530)
Q Consensus       204 ~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  280 (530)
                      ++.+.+++.+.+ +.++..+..++..++..-..  .......+|.+..++.+.+..++..++.+|.+++...........
T Consensus       184 v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  263 (644)
T 2z6h_A          184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG  263 (644)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHH
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhh
Confidence            788888887764 45777888888888753221  112234788888899998999999999999999876544444557


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--H-HHHhhhhHhHhHhccCC--cHHHHHHHHHHHHhhccccCHHH-
Q 009632          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKDA-  354 (530)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~-  354 (530)
                      ++|.+.+++.++++++|..++.+|..++..-..  . ......++.+..++.+.  .+.++..++.+++.++...+... 
T Consensus       264 ~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~  343 (644)
T 2z6h_A          264 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM  343 (644)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHH
Confidence            899999999999999999999999998763211  1 12234567777666642  37999999999999976544221 


Q ss_pred             -----HHHhHHHHHHHhhcCCC-hHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCCCh---------------
Q 009632          355 -----TIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHW---------------  411 (530)
Q Consensus       355 -----~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~~~---------------  411 (530)
                           .....+|.+..+|.+++ +.+|..++.+++++...-..  ......++|.|.+++.+.++               
T Consensus       344 ~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~  423 (644)
T 2z6h_A          344 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF  423 (644)
T ss_dssp             HHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchh
Confidence                 22357899999999875 69999999999998753211  11234677777777665433               


Q ss_pred             -------HHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--ChhHHhhhhHHHH
Q 009632          412 -------RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQV  480 (530)
Q Consensus       412 -------~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~~i~~~l  480 (530)
                             .++..++.++..++.......  .....+|.+..++.++..+||..++.+|+.+...-  .........++.+
T Consensus       424 ~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L  503 (644)
T 2z6h_A          424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL  503 (644)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHH
Confidence                   455566667766654321111  12346899999999999999999999999887421  1111224568889


Q ss_pred             HhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCC
Q 009632          481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR  526 (530)
Q Consensus       481 ~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~  526 (530)
                      ..++.+++..+|..|.++++.+...-+......--++.+..+..+.
T Consensus       504 ~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~  549 (644)
T 2z6h_A          504 TELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE  549 (644)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence            9999999999999999999999886653321111255566555543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.90  E-value=4.7e-21  Score=193.58  Aligned_cols=459  Identities=12%  Similarity=0.023  Sum_probs=316.2

Q ss_pred             hhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCcc-ch--hcchhHHHhhhc-ccchHHHHHHHHHHHHHHhhcC
Q 009632           44 RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE-HA--HVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMR  118 (530)
Q Consensus        44 ~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~-~~--~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~  118 (530)
                      ......+|.+.. +.++++.+|..++..|++++..-.... ..  ...++.+..++. ++++.+|..++.+|..++..-.
T Consensus        13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~   92 (529)
T 1jdh_A           13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE   92 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence            344456777766 778899999999999999876321110 01  134555555554 4588999999999999876522


Q ss_pred             hhh--hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 009632          119 ESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA  192 (530)
Q Consensus       119 ~~~--~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~  192 (530)
                      ...  .....+|.+..+++++++.+|..++..+..++......    .....+|.+..++.++++++|..++.+|..++.
T Consensus        93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~  172 (529)
T 1jdh_A           93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence            211  12236788888888888889999999998888764332    236688999999999999999999999998876


Q ss_pred             hhcc---hhhHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHH
Q 009632          193 TVEP---AHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLY  266 (530)
Q Consensus       193 ~~~~---~~~~~~l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~  266 (530)
                      .-+.   .......++.+.+++.+.++ ..+..+..++..++..-..  .......+|.+..++.+.+..++..++.++.
T Consensus       173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~  252 (529)
T 1jdh_A          173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence            3221   11223467777777776654 4555677777777643211  1122457888899999999999999999999


Q ss_pred             HHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--HH-HHHhhhhHhHhHhccC--CcHHHHHHHHH
Q 009632          267 ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PE-LAIQHILPCVKELSSD--SSQHVRSALAS  341 (530)
Q Consensus       267 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~~-~~~~~l~~~l~~~~~d--~~~~vr~~~~~  341 (530)
                      .++............+|.+.+++.++++++|..++.++..++..-.  .. ......+|.+.+++.+  .++.++..++.
T Consensus       253 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~  332 (529)
T 1jdh_A          253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence            9987654444456789999999999999999999999999976321  11 1223456666666653  44899999999


Q ss_pred             HHHhhccccCHH------HHHHhHHHHHHHhhcCCC-hHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCCChH
Q 009632          342 VIMGMAPLLGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWR  412 (530)
Q Consensus       342 ~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~~~~  412 (530)
                      .++.++...+..      ......+|.+..++++++ +.+|..++.++.++...-..  ......++|.+.+++.+.++.
T Consensus       333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  412 (529)
T 1jdh_A          333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence            999997653321      122356899999999886 59999999999998753211  112346788888888887777


Q ss_pred             HHHHHHHHHHH----------------------HHhhhCh--hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH--
Q 009632          413 VRLAIIEYIPL----------------------LASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE--  466 (530)
Q Consensus       413 ~R~~~~~~l~~----------------------l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~--  466 (530)
                      +|..+++++++                      ++.....  .......+|.+..++.|+..+||..++.+++.+...  
T Consensus       413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~  492 (529)
T 1jdh_A          413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE  492 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHH
Confidence            87766554443                      3221110  012234578999999999999999999999987632  


Q ss_pred             hChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHH
Q 009632          467 FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL  502 (530)
Q Consensus       467 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i  502 (530)
                      ..........++.+..+++++|.++|..|.+++.++
T Consensus       493 ~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            111122356789999999999999999999999876

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.90  E-value=1.6e-19  Score=183.95  Aligned_cols=467  Identities=10%  Similarity=0.068  Sum_probs=341.2

Q ss_pred             chHHHHHHHHHHhcccccCCC----ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh---hh-hhhHHHHHH
Q 009632           60 DDEVLLAMAEELGVFIPYVGG----VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DL-VDWYIPLVK  131 (530)
Q Consensus        60 ~~~vr~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~-~~~l~~~l~  131 (530)
                      .++.|..++-++.++.+.++.    +.+...+-.++.......+..-...|+.++..+....++.   .+ ....+|.+.
T Consensus       217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li  296 (810)
T 3now_A          217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL  296 (810)
T ss_dssp             CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence            568999999999998887664    2234444555555555555555666777888887754432   12 334678888


Q ss_pred             HHhcCCccchhHHHHhHhhhhcCCCChH--HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhc---c-h----hhHH
Q 009632          132 RLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---P-A----HLKT  201 (530)
Q Consensus       132 ~l~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~-~----~~~~  201 (530)
                      .++.+++..++..|..+++.++..-...  ..+.-.|.+..++.+.+..+|..|+.+|..+....+   + .    .-..
T Consensus       297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~  376 (810)
T 3now_A          297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAAL  376 (810)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHH
Confidence            8888888889999999999877662211  222234999999998889999999999999875322   1 1    2245


Q ss_pred             HHHHHHHHhhcCC--chhHHHHHHHHHHHHhhhcCc-hhhh--hccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc-
Q 009632          202 DIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEP-QDCV--AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-  275 (530)
Q Consensus       202 ~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~-~~~~--~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-  275 (530)
                      .+++.+.+++.++  ++++|..|+++|.+++..... ..+.  ..++|.+..++++.+..+...++.+|++++...... 
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~  456 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE  456 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence            7889999999888  788999999999999865332 1222  358888999988888889999999999998743100 


Q ss_pred             ----------------------------------ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhh
Q 009632          276 ----------------------------------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQH  319 (530)
Q Consensus       276 ----------------------------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~  319 (530)
                                                        ......+|.|.++++.+++.+|..|+++|..++..-...  .....
T Consensus       457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G  536 (810)
T 3now_A          457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG  536 (810)
T ss_dssp             CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence                                              011247899999999999999999999999998532211  23345


Q ss_pred             hhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH-----HHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhc---
Q 009632          320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT-----IEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG---  390 (530)
Q Consensus       320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~---  390 (530)
                      .+|.+..++.+.+...|..++.++..++....++..     ....+|.+..+|..+ +...+..|+.+|.++...-.   
T Consensus       537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~  616 (810)
T 3now_A          537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR  616 (810)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence            688888888888899999999999988754443321     234788899999854 44456678889988875421   


Q ss_pred             hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh-hhHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       391 ~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~-~~~~--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                      ...+....+|.+..++.+++..+|..|++++++++..-.. ..+.  ...+|.+..++..++..+|..|+.+|+.+....
T Consensus       617 ~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s  696 (810)
T 3now_A          617 QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS  696 (810)
T ss_dssp             HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence            1122346789999999999999999999999999763211 1122  246889999999999999999999999998742


Q ss_pred             C---hhHHh-hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC---hHHHHhhHHHHHHhhccCC
Q 009632          468 G---PEWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEITCSRLLPVVINASKDR  526 (530)
Q Consensus       468 ~---~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~---~~~~~~~~~p~l~~~l~D~  526 (530)
                      .   ..... ...+|.|..++.+++..+|..|++++.++...-+   ......-.+|.|..+++++
T Consensus       697 ~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~  762 (810)
T 3now_A          697 VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP  762 (810)
T ss_dssp             HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence            1   12223 5688999999999999999999999999986321   2234556788898888654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.89  E-value=1.1e-19  Score=185.19  Aligned_cols=482  Identities=12%  Similarity=0.075  Sum_probs=343.3

Q ss_pred             HHHHHHHhhcHHHHHHhhChHhhhh----cccccccc-ccCCchHHHHHHHHHHhcccccCCC---ccc-hhcchhHHHh
Q 009632           23 IQLRLNSIRRLSTIARALGEERTRK----ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG---VEH-AHVLLPPLET   93 (530)
Q Consensus        23 ~~~R~~a~~~l~~~~~~~~~~~~~~----~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~---~~~-~~~l~~~l~~   93 (530)
                      +..|..+.-.+..+-+.++.+..++    .+-.++.. ....+.+-...++.++.++......   ..+ ....++.|..
T Consensus       218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~  297 (810)
T 3now_A          218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILA  297 (810)
T ss_dssp             TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHH
Confidence            3456666666666665555322222    22233333 3344445555567777666552210   111 2356678888


Q ss_pred             hhcccchHHHHHHHHHHHHHHhhcCh-hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC---------hHHHHH
Q 009632           94 LCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---------DILKTE  163 (530)
Q Consensus        94 l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~---------~~~~~~  163 (530)
                      ++++++..++..|+.+++.++..-.. +.+...-.|.+..+.++++..+|..+...+..+....+         ......
T Consensus       298 Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~  377 (810)
T 3now_A          298 MATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK  377 (810)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence            88899999999999999998775221 11222223888888888777888888888877753211         123567


Q ss_pred             HHHHHHhhcCCC--ChhHHHHHHHHHHHHHhhhcc-hh-h-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--
Q 009632          164 LRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP-AH-L-KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--  236 (530)
Q Consensus       164 l~~~l~~l~~d~--~~~vR~~a~~~l~~l~~~~~~-~~-~-~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--  236 (530)
                      +.+.+..++.++  ++++|+.++.+|..+...... +. . ...++|.+.+++..++..++..|+.++.+++.....+  
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~  457 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM  457 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence            889999888877  899999999999999764332 12 2 2468999999999988999999999999999854210  


Q ss_pred             ---------------------------------hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--Ccccccch
Q 009632          237 ---------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDL  281 (530)
Q Consensus       237 ---------------------------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l  281 (530)
                                                       ......+|.+..++++.++.+|..++++|++++..-.  ........
T Consensus       458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga  537 (810)
T 3now_A          458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGG  537 (810)
T ss_dssp             CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred             hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence                                             0122478999999999999999999999999973210  01123457


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH-----HhhhhHhHhHhccCC-cHHHHHHHHHHHHhhccccCH---
Q 009632          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-----IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK---  352 (530)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~---  352 (530)
                      +|.++.++.+.++.+|..|+.+|..++....++..     ....+|.+.+++... +...+..++.++..++..-..   
T Consensus       538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~  617 (810)
T 3now_A          538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ  617 (810)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence            89999999999999999999999999876555421     123677777877644 445566788888888764211   


Q ss_pred             HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-hHHH--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632          353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (530)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~  429 (530)
                      .......+|.+..++.+++..||..|+.++++++..-.. ..+.  ...++.|..++..++..+|..|+.+++.++....
T Consensus       618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~  697 (810)
T 3now_A          618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV  697 (810)
T ss_dssp             HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH
Confidence            112335689999999999999999999999998753211 1111  3578899999999999999999999999987421


Q ss_pred             --hh-hHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh----HHhhhhHHHHHhhccCC---ChHHHHHHHHH
Q 009632          430 --VG-FFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNP---HYLYRMTILRA  498 (530)
Q Consensus       430 --~~-~~~-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~---~~~vr~~a~~~  498 (530)
                        .. .+. ...+|.+..++.+++..+|..|+.++..+... +.+    ......++.|.++++++   +..+++.|.++
T Consensus       698 ~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~a  776 (810)
T 3now_A          698 KCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC  776 (810)
T ss_dssp             HHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHH
Confidence              12 233 46889999999999999999999999999863 222    23366799999988654   78999999999


Q ss_pred             HHHHhhh
Q 009632          499 ISLLAPV  505 (530)
Q Consensus       499 l~~i~~~  505 (530)
                      +..+.+.
T Consensus       777 L~~ll~~  783 (810)
T 3now_A          777 LAAAERY  783 (810)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9998764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.89  E-value=3e-20  Score=191.34  Aligned_cols=480  Identities=12%  Similarity=0.058  Sum_probs=336.8

Q ss_pred             cCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhh-h--hcccccccc-ccC-CchHHHHHHHHHHhcccccCCCcc
Q 009632            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT-R--KELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGVE   82 (530)
Q Consensus         8 ~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~-~--~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~~~   82 (530)
                      .-.+..|+..++++++..|..|+..|..++........ .  ...++.+.. +.+ +++++|..++.+|..++..-....
T Consensus        13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~   92 (644)
T 2z6h_A           13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   92 (644)
T ss_dssp             TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence            34578899999999999999999999999875432211 1  134555555 443 488999999999988765311111


Q ss_pred             --chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC
Q 009632           83 --HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (530)
Q Consensus        83 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~  157 (530)
                        .....++.|..+++++++.+|..|+.+|.+++.......   .....+|.+..++.++++.++..++.++..++...+
T Consensus        93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~  172 (644)
T 2z6h_A           93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  172 (644)
T ss_dssp             HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence              122467788888888999999999999999998753321   234578888888888887888888888888775432


Q ss_pred             hH----HHHHHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 009632          158 DI----LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (530)
Q Consensus       158 ~~----~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~  230 (530)
                      +.    .....++.+..++.+.+ ..++..++.+|..++..-..  .......++.+.+++.+.+..++..++.++..++
T Consensus       173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~  252 (644)
T 2z6h_A          173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS  252 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            21    12345677777777654 56788888888888753221  2223457899999999999999999999999999


Q ss_pred             hhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCC--cHHHHHHHHHHHH
Q 009632          231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVT  305 (530)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~  305 (530)
                      ...+.......++|.+..++.+.++.+|..++.+|..++..-.   ........++.+++++.+.  .++++..++.+++
T Consensus       253 ~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~  332 (644)
T 2z6h_A          253 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR  332 (644)
T ss_dssp             GGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence            8755444455689999999999999999999999999875311   0111234788888888753  3799999999999


Q ss_pred             HHHHhhCHH------HHHhhhhHhHhHhccCCc-HHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCC-----
Q 009632          306 KFCRILNPE------LAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEF-----  371 (530)
Q Consensus       306 ~~~~~~~~~------~~~~~l~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~-----  371 (530)
                      .++...+..      ......+|.+.+++.+.+ +.+|..++..+..++..-..  ......++|.+..++.+.+     
T Consensus       333 nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~  412 (644)
T 2z6h_A          333 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR  412 (644)
T ss_dssp             HHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhh
Confidence            997543321      122456788888888764 89999999999988753211  1223467788888887643     


Q ss_pred             -----------------hHHHHHHHHhhHHhhhhhchh-HH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh-h
Q 009632          372 -----------------PDVRLNIISKLDQVNQVIGID-LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-G  431 (530)
Q Consensus       372 -----------------~~vr~~a~~~l~~l~~~~~~~-~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~-~  431 (530)
                                       ..++..++.+|..++..-... .+ ....+|.+.+++.+.+..+|..++.++..++..-.. .
T Consensus       413 ~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  492 (644)
T 2z6h_A          413 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE  492 (644)
T ss_dssp             C----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHH
Confidence                             445666777776665432111 11 246789999999999999999999999998753111 1


Q ss_pred             hH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCC
Q 009632          432 FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP  487 (530)
Q Consensus       432 ~~-~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~  487 (530)
                      .+ ....++.+..++.++++.||..|+.+|+.+...-+..+...-.+..+..++.+.
T Consensus       493 ~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~  549 (644)
T 2z6h_A          493 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE  549 (644)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence            11 123477889999999999999999999998765443322111244455555544

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.89  E-value=1.2e-20  Score=190.10  Aligned_cols=382  Identities=13%  Similarity=0.074  Sum_probs=294.1

Q ss_pred             hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChH
Q 009632           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI  159 (530)
Q Consensus        85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~  159 (530)
                      ...++.+...+.++++.+|..|+.+|..++.....    ......++|.+..++.++ ++.+|..++..++.++...+..
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            34566677777788899999999999999765321    123345788888888886 7889999999999988754332


Q ss_pred             ----HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh
Q 009632          160 ----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  232 (530)
Q Consensus       160 ----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  232 (530)
                          .....++.+..++.++++.+|..++.+|+.++...+.   ......++|.+.+++.+.+..+|..|+.++..++..
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~  245 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  245 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence                1245678899999899999999999999999864222   223345789999999999999999999999999975


Q ss_pred             cCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHH
Q 009632          233 LEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK  306 (530)
Q Consensus       233 ~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  306 (530)
                      -++   ......++|.+..++.+.++.+|..++.+|+.++.....   ......++|.+..++.++++.+|..++.+++.
T Consensus       246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~  325 (530)
T 1wa5_B          246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  325 (530)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence            422   234567899999999999999999999999999843111   11123678999999999999999999999999


Q ss_pred             HHHhhCH---HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHH
Q 009632          307 FCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIIS  380 (530)
Q Consensus       307 ~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~  380 (530)
                      ++...+.   ..+...++|.+..++.+.++.+|..++.+++.++.....   ......++|.+..+|.++++.+|..++.
T Consensus       326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  405 (530)
T 1wa5_B          326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW  405 (530)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            9753221   122346788899999999999999999999999863221   1123467899999999999999999999


Q ss_pred             hhHHhhhhhch--hH----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh---------hhHHH-----HHHHH
Q 009632          381 KLDQVNQVIGI--DL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDD-----KLGAL  440 (530)
Q Consensus       381 ~l~~l~~~~~~--~~----~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~---------~~~~~-----~~~~~  440 (530)
                      +++.++...++  +.    ....++|.+..++.++++.+|..++.++..+......         ..+..     ..++.
T Consensus       406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  485 (530)
T 1wa5_B          406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK  485 (530)
T ss_dssp             HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence            99999875433  22    2346889999999999999999999999999875432         11222     24777


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632          441 CMQWLQDKVYSIRDAAANNLKRLAEE  466 (530)
Q Consensus       441 l~~~l~d~~~~Vr~~a~~~l~~l~~~  466 (530)
                      +..+..+++..|+..|..++..++..
T Consensus       486 L~~L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          486 IFNCQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             HHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            88888999999999999988776643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.89  E-value=2.9e-20  Score=187.34  Aligned_cols=348  Identities=13%  Similarity=0.068  Sum_probs=261.7

Q ss_pred             HHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---
Q 009632          163 ELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---  235 (530)
Q Consensus       163 ~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---  235 (530)
                      .++|.+.+++.+++ +.+|..|+.+|+.++..-+.   .......+|.+.+++.++++.+|..|+.+|+.++..-+.   
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~  196 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD  196 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence            45677778777776 88999999999998873221   122335788899999998899999999999998754221   


Q ss_pred             hhhhhccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632          236 QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (530)
Q Consensus       236 ~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  312 (530)
                      ......++|.+..++ .+.++.++..++.+|..++.....  .......+|.+.+++.+++++++..++.+|..++...+
T Consensus       197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~  276 (528)
T 4b8j_A          197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN  276 (528)
T ss_dssp             HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence            112234788888888 678899999999999999865321  12245689999999999999999999999999885432


Q ss_pred             HH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHh
Q 009632          313 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQV  385 (530)
Q Consensus       313 ~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l  385 (530)
                      ..   .....++|.+..++.+.++.++..++.+++.++.....   ......++|.+..+|.++ ++.+|..|+.+++++
T Consensus       277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl  356 (528)
T 4b8j_A          277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI  356 (528)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            21   22346788999999999999999999999999864321   112245789999999998 999999999999999


Q ss_pred             hhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH----HHHHHHHHHHHhcCCcHHHHHHHHH
Q 009632          386 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDAAAN  458 (530)
Q Consensus       386 ~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~Vr~~a~~  458 (530)
                      +..-..   ..+...++|.|..++.+.++.+|..++.+++.++...+++..    ...+++.+..++.++++.++..++.
T Consensus       357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~  436 (528)
T 4b8j_A          357 TAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLE  436 (528)
T ss_dssp             HTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence            863211   112346789999999999999999999999999876443332    2357889999999999999999999


Q ss_pred             HHHHHHHHhChh--------------HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632          459 NLKRLAEEFGPE--------------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (530)
Q Consensus       459 ~l~~l~~~~~~~--------------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~  510 (530)
                      +|+.++...+..              ......++.+..+.++++.+++..|..++..+...-..++
T Consensus       437 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~  502 (528)
T 4b8j_A          437 GLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDT  502 (528)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence            999998765321              1113446778888899999999999999999876544443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=1.3e-20  Score=196.86  Aligned_cols=475  Identities=13%  Similarity=0.053  Sum_probs=327.0

Q ss_pred             ccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh-h--hhhH
Q 009632           51 PFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L--VDWY  126 (530)
Q Consensus        51 ~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~--~~~l  126 (530)
                      |.+.+ +.++++++|..++..+.....    .......+|.|..++.+++..||+.|+.+|..++....... +  ...+
T Consensus       118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~  193 (780)
T 2z6g_A          118 PTNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM  193 (780)
T ss_dssp             --------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence            34434 667788999988888764311    23335567777778888899999999999999987543211 1  1134


Q ss_pred             HHHHHHHhc-CCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--h-hh
Q 009632          127 IPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--A-HL  199 (530)
Q Consensus       127 ~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~  199 (530)
                      ++.+..++. +++..+|..++..+..+...-...   .....++.+..++.++++.+|..++.+|.+++..-..  . ..
T Consensus       194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~  273 (780)
T 2z6g_A          194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR  273 (780)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence            555544444 557889999999988876542111   2235788999999999999999999999999976433  1 22


Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhC--
Q 009632          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVG--  273 (530)
Q Consensus       200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~--  273 (530)
                      ....+|.+.+++.+++..++..+..++..++.....   .......++.+..++++.+ ...+..++.++..++..-.  
T Consensus       274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~  353 (780)
T 2z6g_A          274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK  353 (780)
T ss_dssp             HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH
T ss_pred             HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH
Confidence            356899999999999999999999988877742111   1122346777777777654 4455667777777764211  


Q ss_pred             CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH-
Q 009632          274 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-  352 (530)
Q Consensus       274 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-  352 (530)
                      ........++.+..++.+.++.++..++.++..++...........++|.+.+++.+.++.+|..++.++..++..-.. 
T Consensus       354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~  433 (780)
T 2z6g_A          354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN  433 (780)
T ss_dssp             HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            0112345789999999999999999999999999875533222356788888889999999999999999999764221 


Q ss_pred             --HHHHHhHHHHHHHhhcCC-C-hHHHHHHHHhhHHhhhhhchh------HHHhhHHHHHHHHhcCCC-hHHHHHHHHHH
Q 009632          353 --DATIEQLLPIFLSLLKDE-F-PDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAEDRH-WRVRLAIIEYI  421 (530)
Q Consensus       353 --~~~~~~l~~~l~~~l~d~-~-~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~~~~~~-~~~R~~~~~~l  421 (530)
                        .......++.+..+|.+. + ..+|..++.+|++++...+..      ......+|.|.+++.+++ +.+|..++.++
T Consensus       434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL  513 (780)
T 2z6g_A          434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI  513 (780)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence              111234678888888763 3 489999999999987533221      112456888999988876 69999999999


Q ss_pred             HHHHhhhChh--hHHHHHHHHHHHHhcCCc----------------------HHHHHHHHHHHHHHHHHhCh--hHHhhh
Q 009632          422 PLLASQLGVG--FFDDKLGALCMQWLQDKV----------------------YSIRDAAANNLKRLAEEFGP--EWAMQH  475 (530)
Q Consensus       422 ~~l~~~~~~~--~~~~~~~~~l~~~l~d~~----------------------~~Vr~~a~~~l~~l~~~~~~--~~~~~~  475 (530)
                      +.++..-...  .....++|.+..++.+..                      .+++..++.+|+.++..-..  ......
T Consensus       514 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~  593 (780)
T 2z6g_A          514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN  593 (780)
T ss_dssp             HHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             HHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCC
Confidence            9998522111  112346777877776543                      34677788888877532111  112356


Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh-H-HHHhhHHHHHHhhccCCCCC
Q 009632          476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-E-ITCSRLLPVVINASKDRYLN  529 (530)
Q Consensus       476 i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~-~-~~~~~~~p~l~~~l~D~~~~  529 (530)
                      .+|.|..++.+++..+|..++.++.++...-.. + ......++.|..+++|+.+.
T Consensus       594 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~  649 (780)
T 2z6g_A          594 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG  649 (780)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence            799999999999999999999999998743211 1 12333577888888887653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.87  E-value=2.3e-20  Score=188.46  Aligned_cols=455  Identities=13%  Similarity=0.044  Sum_probs=316.3

Q ss_pred             CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChH-hhh--hcccccccc-cc-CCchHHHHHHHHHHhcccccCCCcc-
Q 009632            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE-RTR--KELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGVE-   82 (530)
Q Consensus         9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~-~~~--~~l~~~l~~-~~-d~~~~vr~~~~~~l~~~~~~~~~~~-   82 (530)
                      -.+..|+..++++++..|..|+..|..++..-... ...  ...++.+.. +. ++++++|..++.+|.+++..-.... 
T Consensus        17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~   96 (529)
T 1jdh_A           17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA   96 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence            45788899999999999999999999987543211 111  134555555 43 3588999999999998865311000 


Q ss_pred             -chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh--h-hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh
Q 009632           83 -HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--D-LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (530)
Q Consensus        83 -~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~  158 (530)
                       .....+|.|..++.++++.+|..|+.+|..++..-+..  . .....+|.+..++.++++.+|..++..+..+...-.+
T Consensus        97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~  176 (529)
T 1jdh_A           97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE  176 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence             12346778888888899999999999999998864331  1 2345788888899888888998888888877653221


Q ss_pred             H----HHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632          159 I----LKTELRSIYTQLCQDDMP-MVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (530)
Q Consensus       159 ~----~~~~l~~~l~~l~~d~~~-~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~  231 (530)
                      .    .....++.+..++.+.++ .++..++.++..++..-..  .......++.+.+++.++++.++..++.++..++.
T Consensus       177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence            1    122356667776665544 4566677777777642211  12234578999999999999999999999999998


Q ss_pred             hcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCC--CcHHHHHHHHHHHHH
Q 009632          232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTK  306 (530)
Q Consensus       232 ~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~  306 (530)
                      ..+.......++|.+.+++.+.++.+|..++.+|++++..-.   ........+|.+.+++.+  ++++++..++.+++.
T Consensus       257 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n  336 (529)
T 1jdh_A          257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  336 (529)
T ss_dssp             TCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            765544455689999999999999999999999999865210   011123467888888864  347999999999999


Q ss_pred             HHHhhCH------HHHHhhhhHhHhHhccCCc-HHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHH
Q 009632          307 FCRILNP------ELAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLN  377 (530)
Q Consensus       307 ~~~~~~~------~~~~~~l~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~  377 (530)
                      ++...+.      .......+|.+.+++.+++ +.+|..++..++.++..-..  ......++|.+..+++++++.+|..
T Consensus       337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  416 (529)
T 1jdh_A          337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR  416 (529)
T ss_dssp             HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred             HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            8754322      1222356788888888765 79999999999988753221  1223467899999998887788776


Q ss_pred             HHHhhHH----------------------hhhhhch--hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--hh
Q 009632          378 IISKLDQ----------------------VNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VG  431 (530)
Q Consensus       378 a~~~l~~----------------------l~~~~~~--~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~~  431 (530)
                      ++.++.+                      ++.....  .......++.+..++.+++..+|..+..++..++..-.  ..
T Consensus       417 a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  496 (529)
T 1jdh_A          417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA  496 (529)
T ss_dssp             ---------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence            6554443                      2221100  01124567899999999999999999999998864210  11


Q ss_pred             hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632          432 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (530)
Q Consensus       432 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  463 (530)
                      ......++.+..++.++++.||..|..++..+
T Consensus       497 i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          497 IEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            11234578899999999999999999998765

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.87  E-value=1.5e-19  Score=182.23  Aligned_cols=380  Identities=13%  Similarity=0.074  Sum_probs=290.1

Q ss_pred             cchhHHHhhhcccchHHHHHHHHHHHHHHhhcC-h---hhhhhhHHHHHHHHhcCCc-cchhHHHHhHhhhhcCCCChH-
Q 009632           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMR-E---SDLVDWYIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDI-  159 (530)
Q Consensus        86 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~l~~~~~-~~~r~~~~~~l~~l~~~~~~~-  159 (530)
                      .-+|.+...+.++++.+|..|+.+|..++..-. +   ......++|.+..++.+++ +.+|..++..++.++....+. 
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            346667777778889999999999999977544 1   2233457788888887765 889999999999988754332 


Q ss_pred             ---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhhh
Q 009632          160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKL  232 (530)
Q Consensus       160 ---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~  232 (530)
                         .....++.+..++.++++.+|..++.+|+.++...+.   .......++.+.+++ .+.+..++..++.++..++..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence               2235889999999999999999999999999864322   112234678888888 677889999999999999976


Q ss_pred             cCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 009632          233 LEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  307 (530)
Q Consensus       233 ~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  307 (530)
                      .+.  ......++|.+..++.+.++.++..++.+|+.++.....   ......++|.+..++.++++.++..|+.+|+.+
T Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI  313 (528)
T ss_dssp             SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence            422  234567899999999999999999999999998743211   111235789999999999999999999999999


Q ss_pred             HHhhCHH---HHHhhhhHhHhHhccCC-cHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHH
Q 009632          308 CRILNPE---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIIS  380 (530)
Q Consensus       308 ~~~~~~~---~~~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~  380 (530)
                      +...+..   .+...++|.+..++.+. ++.+|..++.+++.++.....   ......++|.+..++.+.++.+|..|+.
T Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  393 (528)
T 4b8j_A          314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW  393 (528)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            8632211   22245688888888888 999999999999999763211   1123467899999999999999999999


Q ss_pred             hhHHhhhhhchhHH----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh---------hHH-----HHHHHHHH
Q 009632          381 KLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---------FFD-----DKLGALCM  442 (530)
Q Consensus       381 ~l~~l~~~~~~~~~----~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~---------~~~-----~~~~~~l~  442 (530)
                      ++++++..-+++..    ...+++.|..++.++++.++..++.++..+.......         .+.     ...++.+.
T Consensus       394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  473 (528)
T 4b8j_A          394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIE  473 (528)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHH
Confidence            99999876333221    2467899999999999999999999999998754321         122     12456778


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHH
Q 009632          443 QWLQDKVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       443 ~~l~d~~~~Vr~~a~~~l~~l~~  465 (530)
                      .+..+++..|+..|..++..++.
T Consensus       474 ~L~~~~~~~v~~~a~~il~~~~~  496 (528)
T 4b8j_A          474 NLQSHDNNEIYEKAVKILEAYWM  496 (528)
T ss_dssp             HGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCC
Confidence            88889999999999999877654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.85  E-value=3.9e-19  Score=180.99  Aligned_cols=448  Identities=10%  Similarity=0.028  Sum_probs=295.2

Q ss_pred             ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc
Q 009632           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA  135 (530)
Q Consensus        56 ~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  135 (530)
                      +.+++.+.|+.+...+..+++  ..++....+...|..-++|+++.+|..|+.+++.+..    ....+.+.+.+..++.
T Consensus        79 ~~s~~~~~Krl~Yl~~~~~~~--~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~  152 (618)
T 1w63_A           79 IASQKFTDKRIGYLGAMLLLD--ERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLK  152 (618)
T ss_dssp             HHSSSHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHH
T ss_pred             HcCCchHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHc
Confidence            456778888888887777765  2233334556667777789999999999999999863    3445667888888899


Q ss_pred             CCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcC-
Q 009632          136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQD-  213 (530)
Q Consensus       136 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d-  213 (530)
                      ++++.+|..|+.+++.++...+ +..+.+++.+..++.|+++.|+.+|+.++..++..-+. ......++|.+.+.+.+ 
T Consensus       153 ~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~  231 (618)
T 1w63_A          153 TSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNL  231 (618)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887543 44456788888899999999999999999998764322 11122344555544432 


Q ss_pred             --------------CchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHhC
Q 009632          214 --------------DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ------DKSWRVRYMVANQLYELCEAVG  273 (530)
Q Consensus       214 --------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~  273 (530)
                                    .++-.+...+++++.++..-+  .....+.+.+..++.      +.+..|...+++++..+..   
T Consensus       232 ~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---  306 (618)
T 1w63_A          232 IMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD--DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---  306 (618)
T ss_dssp             HHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---
T ss_pred             HcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---
Confidence                          366778888888888876422  123345555555532      2345677777777765421   


Q ss_pred             CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH
Q 009632          274 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD  353 (530)
Q Consensus       274 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  353 (530)
                      .........+.+..++.++++++|..|+.++..++...+ + ......+.+...+.|++..+|..+++.+..++..-.- 
T Consensus       307 ~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~-~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv-  383 (618)
T 1w63_A          307 ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-N-AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI-  383 (618)
T ss_dssp             CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-H-HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST-
T ss_pred             CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-H-HHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH-
Confidence            111122356777788888999999999999999987532 2 2244455666777899999999999999999875442 


Q ss_pred             HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH
Q 009632          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  433 (530)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~  433 (530)
                         ..+++.+...+.+.+.++|..++.+++.++..+.++  ....++.+.+++.+....++..++..+..+......  .
T Consensus       384 ---~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l  456 (618)
T 1w63_A          384 ---RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--M  456 (618)
T ss_dssp             ---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--T
T ss_pred             ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--H
Confidence               344566666777788999999999999999876433  134566666666665555555566666655543321  1


Q ss_pred             HHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhChh---------HHhhhhHHHHHhhcc--CCChHHHHHHHHHHH
Q 009632          434 DDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPE---------WAMQHITPQVLEMIN--NPHYLYRMTILRAIS  500 (530)
Q Consensus       434 ~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~---------~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~  500 (530)
                      ....++.+...+.+  ....+...+++++|+....+...         .....+++.+.++++  ..+..+|..++.++.
T Consensus       457 ~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~  536 (618)
T 1w63_A          457 HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIM  536 (618)
T ss_dssp             HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            23344444444442  12334446788888887654210         011234444444443  457778888888888


Q ss_pred             HHhhhcChHHHHhhHHHHHHhhccCCC
Q 009632          501 LLAPVMGSEITCSRLLPVVINASKDRY  527 (530)
Q Consensus       501 ~i~~~~~~~~~~~~~~p~l~~~l~D~~  527 (530)
                      ++....+..  .+.+...+..+..|..
T Consensus       537 Kl~~~~~~~--~~~l~~~L~~~~~~~d  561 (618)
T 1w63_A          537 KLSTRFTCT--VNRIKKVVSIYGSSID  561 (618)
T ss_dssp             HHHTTCSSC--HHHHHHHHHHHTTCSC
T ss_pred             HHHHhCcch--HHHHHHHHHHhcCCCC
Confidence            877665432  3444555555555543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.85  E-value=4.4e-19  Score=180.59  Aligned_cols=476  Identities=11%  Similarity=0.050  Sum_probs=329.3

Q ss_pred             CCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCcc
Q 009632            4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE   82 (530)
Q Consensus         4 ~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~   82 (530)
                      |.+.-+.+...++.+.+++...|+.+.-++...+.. .++ ..-..++.+.. +.++++.+|..|..+|+++..    ++
T Consensus        65 G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-~~e-~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~  138 (618)
T 1w63_A           65 GYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-RQD-VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SE  138 (618)
T ss_dssp             TCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-CHH-HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HH
T ss_pred             CCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-CcH-HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HH
Confidence            444444566777888888888888777666655432 122 22234455555 889999999999999999853    56


Q ss_pred             chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh--HH
Q 009632           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--IL  160 (530)
Q Consensus        83 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~--~~  160 (530)
                      ....+.+.+..++.|+++.||..|+.++..+....++ .. ..+.+.+..++.|+++.++..|+.++..+...-++  ..
T Consensus       139 ~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~  216 (618)
T 1w63_A          139 MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH  216 (618)
T ss_dssp             HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence            6778889999999999999999999999999986543 33 34667778888899999999999999998875332  12


Q ss_pred             HHHHHHHHHhhcC---------------CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhc------CCchhHH
Q 009632          161 KTELRSIYTQLCQ---------------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ------DDQDSVR  219 (530)
Q Consensus       161 ~~~l~~~l~~l~~---------------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~------d~~~~vr  219 (530)
                      ...++|.+...+.               .+++..+..+++.++.+...-+  ...+.+.+.+.+++.      +.+..|.
T Consensus       217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~  294 (618)
T 1w63_A          217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD--DSSEAMNDILAQVATNTETSKNVGNAIL  294 (618)
T ss_dssp             HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccccchHHHHH
Confidence            2233343333222               3477788888888888765321  122334455555442      3345688


Q ss_pred             HHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHH
Q 009632          220 LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA  299 (530)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~  299 (530)
                      ..|++++..+..   .........+.+..++.++++.+|..++.+|+.++...+.-  .....+.++.++.|++..||..
T Consensus       295 ~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~--~~~~~~~i~~~l~d~d~~Ir~~  369 (618)
T 1w63_A          295 YETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA--VQRHRSTIVDCLKDLDVSIKRR  369 (618)
T ss_dssp             HHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH--HGGGHHHHHHGGGSSCHHHHHH
T ss_pred             HHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH--HHHHHHHHHHHccCCChhHHHH
Confidence            888887776532   12223346677778888888899999999999998763321  2334567888899999999999


Q ss_pred             HHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHH
Q 009632          300 AAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII  379 (530)
Q Consensus       300 a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  379 (530)
                      ++..+..++..-..+    .+++.+...+.+.+..+|..++..++.++..+.+.  ....++.++.++++....++..++
T Consensus       370 alelL~~l~~~~nv~----~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~  443 (618)
T 1w63_A          370 AMELSFALVNGNNIR----GMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAV  443 (618)
T ss_dssp             HHHHHHHHCCSSSTH----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHH
T ss_pred             HHHHHHHHcccccHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHH
Confidence            999999887643333    34455555556678899999999999999876432  234467777888887777777777


Q ss_pred             HhhHHhhhhhchhHHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhChh---------hHHHHHHHHHHHHhc--
Q 009632          380 SKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---------FFDDKLGALCMQWLQ--  446 (530)
Q Consensus       380 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~~---------~~~~~~~~~l~~~l~--  446 (530)
                      ..+..+.....  ......++.+.+.+.+  .+...+..+++++|..+..+...         .....+++.+..++.  
T Consensus       444 ~~l~~ii~~~p--~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  521 (618)
T 1w63_A          444 PNLIQLITNSV--EMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN  521 (618)
T ss_dssp             HHHHHHHHHSC--STHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST
T ss_pred             HHHHHHHhcCh--hHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc
Confidence            77777765432  2234566666666553  23445557899999998765321         112345566666554  


Q ss_pred             CCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          447 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       447 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      ...+.||..++.++..++...+..  .+.+...+....+|.|.++|..|...+.-+..
T Consensus       522 ~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~  577 (618)
T 1w63_A          522 MSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK  577 (618)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            567899999999999988766422  34455555566778999999999998887654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.81  E-value=5.1e-17  Score=162.01  Aligned_cols=341  Identities=13%  Similarity=0.095  Sum_probs=247.4

Q ss_pred             HHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---h
Q 009632          164 LRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---Q  236 (530)
Q Consensus       164 l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~  236 (530)
                      ++|.|.+++. +.++.++..|+.+|.+++..-+.   .......+|.|.+++.+++..+|..|+.+|+.++...+.   .
T Consensus       101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~  180 (510)
T 3ul1_B          101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL  180 (510)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5677777775 44577888888888888753222   122335788888888888888888888888888754221   1


Q ss_pred             hhhhccHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632          237 DCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC  308 (530)
Q Consensus       237 ~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  308 (530)
                      ......++.+..++.+.+     ..+.+.++.++..++..-...   .....++|.+.+++.+++++++..++.++..++
T Consensus       181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~  260 (510)
T 3ul1_B          181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT  260 (510)
T ss_dssp             HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            123446777777776543     345667777777776532211   123468899999999999999999999999887


Q ss_pred             HhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhh
Q 009632          309 RILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKL  382 (530)
Q Consensus       309 ~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  382 (530)
                      ......   .....++|.+..++.+.++.++..++.+++.++..-..   .......++.+..++.+++..+|..++.++
T Consensus       261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL  340 (510)
T 3ul1_B          261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM  340 (510)
T ss_dssp             SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred             hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence            532211   12345788888999999999999999999988753321   112335678888899999999999999999


Q ss_pred             HHhhhhhchh---HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH----HHHHHHHHHHHhcCCcHHHHHH
Q 009632          383 DQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDA  455 (530)
Q Consensus       383 ~~l~~~~~~~---~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~Vr~~  455 (530)
                      .+++..-...   .....++|.+..++.+.++.+|..++.++.+++.....+..    ....+|.+..++.++++.++..
T Consensus       341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~  420 (510)
T 3ul1_B          341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV  420 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence            9987532211   12346889999999999999999999999999876554432    2346889999999999999999


Q ss_pred             HHHHHHHHHHHh---Chh-HH-----hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          456 AANNLKRLAEEF---GPE-WA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       456 a~~~l~~l~~~~---~~~-~~-----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      ++.+|..|.+..   +.. ..     ....+..+..+..++|.+++..|...+.+...
T Consensus       421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            999999988653   211 11     12356778888889999999999999988764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.80  E-value=9.4e-17  Score=161.07  Aligned_cols=342  Identities=13%  Similarity=0.099  Sum_probs=249.9

Q ss_pred             HHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---
Q 009632          163 ELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---  235 (530)
Q Consensus       163 ~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---  235 (530)
                      .++|.|.+++. +.++.++..|+.+|.+++..-..   .......+|.+.+++.+++..+|..|+.+|+.++..-+.   
T Consensus       119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~  198 (529)
T 3tpo_A          119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD  198 (529)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence            35677777664 45678888888888888764322   223345788888888888888888888888888754221   


Q ss_pred             hhhhhccHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 009632          236 QDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  307 (530)
Q Consensus       236 ~~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  307 (530)
                      .......++.+..++.+.+     ..+.+.++.++..++..-...   .....++|.+.+++.+++++++..++.+|..+
T Consensus       199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l  278 (529)
T 3tpo_A          199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL  278 (529)
T ss_dssp             HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            1123446777777776543     345667777777776532221   12346889999999999999999999999988


Q ss_pred             HHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHh
Q 009632          308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK  381 (530)
Q Consensus       308 ~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  381 (530)
                      +......   .....++|.+..++.+.++.++..++.+++.++..-..   .......++.+..++.+++..+|..++.+
T Consensus       279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~a  358 (529)
T 3tpo_A          279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT  358 (529)
T ss_dssp             HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHH
Confidence            7643221   22346788889999999999999999999998753221   11234567889999999999999999999


Q ss_pred             hHHhhhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH----HHHHHHHHHHHhcCCcHHHHH
Q 009632          382 LDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRD  454 (530)
Q Consensus       382 l~~l~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~Vr~  454 (530)
                      +++++..-..   ......++|.+..++.+.++.+|..|+.+++.++.....+..    ....+|.+..++..+++.++.
T Consensus       359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~  438 (529)
T 3tpo_A          359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ  438 (529)
T ss_dssp             HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred             HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence            9998753221   112346899999999999999999999999999876554432    234688999999999999999


Q ss_pred             HHHHHHHHHHHHh---Chh-HH-----hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          455 AAANNLKRLAEEF---GPE-WA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       455 ~a~~~l~~l~~~~---~~~-~~-----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      .++.+|..|.+..   +.. ..     ....+..+..+..++|.+++..|...+.+...
T Consensus       439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            9999999987653   211 11     12346777788889999999999999987753

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.80  E-value=1.1e-16  Score=162.26  Aligned_cols=473  Identities=11%  Similarity=0.046  Sum_probs=289.0

Q ss_pred             HHHHHHhcC---hhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcc
Q 009632           12 AVLIDELKN---DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (530)
Q Consensus        12 ~~l~~~l~~---~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l   87 (530)
                      ..+.+.+++   .+...|..++.-+--+ ..+|.+ .. .+.+.+.. +.+++.+.|+.+...+..+++  +.++....+
T Consensus        38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d-~s-~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--~~~e~~~L~  112 (621)
T 2vgl_A           38 ANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHD-ID-FGHMEAVNLLSSNRYTEKQIGYLFISVLVN--SNSELIRLI  112 (621)
T ss_dssp             HHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCC-CC-SCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--CCHHHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCC-Cc-hhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--CCcHHHHHH
Confidence            344444543   2555555555544433 223432 11 22222222 567888999999999988876  334444455


Q ss_pred             hhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHh--cCCccchhHHHHhHhhhhcCCCChHHHH--H
Q 009632           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA--AGEWFTARVSACGLFHIAYPSAPDILKT--E  163 (530)
Q Consensus        88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~--~~~~~~~r~~~~~~l~~l~~~~~~~~~~--~  163 (530)
                      ...+..-++|+++.+|-.|+.+++.+..    ....+.+.|.+..++  .|.++.+|..|+.++..++... ++..+  .
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~  187 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGD  187 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCS
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchh
Confidence            6667777789999999999999999843    345556778888887  8889999999999988887743 34333  6


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCC-------------chhHHHHHHHHHHH
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDD-------------QDSVRLLAVEGCAA  228 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-------------~~~vr~~a~~~l~~  228 (530)
                      +.+.+.++++|+++.|+.+|+.++..++..-+..  ...+.++..+.+++.+.             ++-.+...++.+..
T Consensus       188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~  267 (621)
T 2vgl_A          188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC  267 (621)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence            7888889999999999999999999988754331  23344555555555432             35577777777766


Q ss_pred             HhhhcCchhhhhccHHHHHHhc---CC-C--------C--HHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 009632          229 LGKLLEPQDCVAHILPVIVNFS---QD-K--------S--WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA  294 (530)
Q Consensus       229 l~~~~~~~~~~~~~~~~l~~~~---~d-~--------~--~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  294 (530)
                      ++..-.+ .....+.+.+..++   .+ +        +  ..|...++.++..+.   ............+..++.++++
T Consensus       268 ~~~~~d~-~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~  343 (621)
T 2vgl_A          268 YPPPEDP-AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRET  343 (621)
T ss_dssp             SSSCSSH-HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCH
T ss_pred             hCCCCCH-HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCc
Confidence            5532111 22222333333322   11 1        1  145555555554442   2222234567778888888899


Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChH
Q 009632          295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD  373 (530)
Q Consensus       295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  373 (530)
                      ++|..++.++..++...+.........+.+...+. |++..+|..+++.+..++..    .-...++..+...+.+.+.+
T Consensus       344 niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~  419 (621)
T 2vgl_A          344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYS  419 (621)
T ss_dssp             HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHH
T ss_pred             chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHH
Confidence            99999999999998765422233455566666667 89999999999998888743    23456777777788888999


Q ss_pred             HHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcH--H
Q 009632          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY--S  451 (530)
Q Consensus       374 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~--~  451 (530)
                      .|..++.+++.++..+.++.  ...+..+.+++.+....+...++..+..+.....  ......+..+...+.|+..  .
T Consensus       420 ~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~  495 (621)
T 2vgl_A          420 IREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHEN  495 (621)
T ss_dssp             HHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHH
T ss_pred             HHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHH
Confidence            99999999999887765321  2344444444443332334444444444433222  1222333444455555432  3


Q ss_pred             HHHHHHHHHHHHHHHhChhH--HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632          452 IRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (530)
Q Consensus       452 Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~  506 (530)
                      +-..++.++|+.........  ...+++..+.+.+.+.+..+|..++.++.++....
T Consensus       496 li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~  552 (621)
T 2vgl_A          496 LVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF  552 (621)
T ss_dssp             HHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC
Confidence            44455566666544332110  01133444555555666677777777777665543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.79  E-value=1.2e-16  Score=159.26  Aligned_cols=377  Identities=11%  Similarity=0.072  Sum_probs=277.8

Q ss_pred             hhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhc-CCccchhHHHHhHhhhhcCCCChH---
Q 009632           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI---  159 (530)
Q Consensus        88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~~~~---  159 (530)
                      ++-+...+++++..++..|+..+.++.+.-..    ..+..-++|.+.++++ ++++.++..|+.+++.++..-++.   
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            44555666788899999999999988654321    2234447788877775 456789999999999998654433   


Q ss_pred             -HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCch-----hHHHHHHHHHHHHh
Q 009632          160 -LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQD-----SVRLLAVEGCAALG  230 (530)
Q Consensus       160 -~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~-----~vr~~a~~~l~~l~  230 (530)
                       .....+|.|..++.++++.||+.|+.+|++++...+.   .......++.+..++.+.+.     .+...+..++..++
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  218 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  218 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence             1234789999999999999999999999999864322   22233467788888876542     35566777888877


Q ss_pred             hhcCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHH
Q 009632          231 KLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKV  304 (530)
Q Consensus       231 ~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  304 (530)
                      ..-.+   ......++|.+..++.+.++.++..++.+|..++.....   ......++|.+.+++.++++.++..++.++
T Consensus       219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL  298 (510)
T 3ul1_B          219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  298 (510)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence            65332   123456899999999999999999999999988743111   112345789999999999999999999999


Q ss_pred             HHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHH
Q 009632          305 TKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNI  378 (530)
Q Consensus       305 ~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a  378 (530)
                      +.++..-+..   ......++.+..++.+++..+|..++.+++.++..-..   ......++|.+..++.+.+..+|..|
T Consensus       299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  378 (510)
T 3ul1_B          299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  378 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence            9986532211   22345678888889999999999999999998753321   12234688999999999999999999


Q ss_pred             HHhhHHhhhhhchhH----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---Ch-hhHHH-----HHHHHHHHHh
Q 009632          379 ISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-GFFDD-----KLGALCMQWL  445 (530)
Q Consensus       379 ~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~-~~~~~-----~~~~~l~~~l  445 (530)
                      +.++.+++..-..+.    .....++.|.+++..++..++..++.++..+.+..   +. +.+..     ..+..+..+.
T Consensus       379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq  458 (510)
T 3ul1_B          379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ  458 (510)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence            999999876543332    23467899999999999999999999999887643   21 11211     2456677788


Q ss_pred             cCCcHHHHHHHHHHHHHHH
Q 009632          446 QDKVYSIRDAAANNLKRLA  464 (530)
Q Consensus       446 ~d~~~~Vr~~a~~~l~~l~  464 (530)
                      .+++.+|+..|...+...+
T Consensus       459 ~~~n~~i~~~A~~iie~yf  477 (510)
T 3ul1_B          459 RHENESVYKASLNLIEKYF  477 (510)
T ss_dssp             GCSSHHHHHHHHHHHHHHC
T ss_pred             cCCCHHHHHHHHHHHHHHC
Confidence            8899999999999876554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.79  E-value=3e-16  Score=157.41  Aligned_cols=379  Identities=11%  Similarity=0.067  Sum_probs=279.7

Q ss_pred             cchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhc-CCccchhHHHHhHhhhhcCCCChH-
Q 009632           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-  159 (530)
Q Consensus        86 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~~~~-  159 (530)
                      ..++-+...+.+++...+..|+..+.++...-..    ..+...++|.+..++. ++++.++..|+.+++.++..-+.. 
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            3455566666778899999999999887653222    2234457777777775 556789999999999998765443 


Q ss_pred             ---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCch-----hHHHHHHHHHHH
Q 009632          160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQD-----SVRLLAVEGCAA  228 (530)
Q Consensus       160 ---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~-----~vr~~a~~~l~~  228 (530)
                         .....+|.|..++.++++.+|..|+.+|++++..-+.   .......++.+..++.+.+.     .+...+..++..
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence               2245789999999999999999999999999864322   22233467888888876542     355667778888


Q ss_pred             HhhhcCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHH
Q 009632          229 LGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAG  302 (530)
Q Consensus       229 l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~  302 (530)
                      ++..-.+   ......++|.+..++.+.+..++..++.+|..++.....   ......++|.+..++.++++.++..++.
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~  315 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  315 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence            7765432   223456899999999999999999999999988753211   1123467899999999999999999999


Q ss_pred             HHHHHHHhhCH---HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHH
Q 009632          303 KVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRL  376 (530)
Q Consensus       303 ~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~  376 (530)
                      +++.++..-+.   .......++.+..++.+++..+|..++.+++.++..-..   ......++|.+..++.+++..+|.
T Consensus       316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  395 (529)
T 3tpo_A          316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  395 (529)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHH
Confidence            99998753221   123356788889999999999999999999998753221   122346889999999999999999


Q ss_pred             HHHHhhHHhhhhhchhHH----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---Ch-hhHHHH-----HHHHHHH
Q 009632          377 NIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-GFFDDK-----LGALCMQ  443 (530)
Q Consensus       377 ~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~-~~~~~~-----~~~~l~~  443 (530)
                      .|+.++.+++..-..+..    ...+++.|.+++..++..++..++.+|..+.+..   +. +.+...     .+..+..
T Consensus       396 ~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~  475 (529)
T 3tpo_A          396 AAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA  475 (529)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHH
Confidence            999999998765433322    2467899999999999999999999999887643   21 112211     2455666


Q ss_pred             HhcCCcHHHHHHHHHHHHHHH
Q 009632          444 WLQDKVYSIRDAAANNLKRLA  464 (530)
Q Consensus       444 ~l~d~~~~Vr~~a~~~l~~l~  464 (530)
                      +..+++.+|+..|...+...+
T Consensus       476 Lq~~~n~~i~~~A~~iie~yf  496 (529)
T 3tpo_A          476 LQRHENESVYKASLNLIEKYF  496 (529)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHHHC
Confidence            778899999999999876654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.78  E-value=4e-17  Score=165.45  Aligned_cols=479  Identities=10%  Similarity=0.037  Sum_probs=321.2

Q ss_pred             CCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCcc
Q 009632            4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE   82 (530)
Q Consensus         4 ~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~   82 (530)
                      |.+.-+.+...++.+.++|...|+.+.-++..++..- ++ ..-..++.++. +.++|+.+|..|..+++++..    ++
T Consensus        69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e-~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e  142 (621)
T 2vgl_A           69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SE-LIRLINNAIKNDLASRNPTFMGLALHCIANVGS----RE  142 (621)
T ss_dssp             SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH
T ss_pred             CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH
Confidence            4454556778888999999999998888887665431 22 22233455555 889999999999999998843    67


Q ss_pred             chhcchhHHHhhh--cccchHHHHHHHHHHHHHHhhcChhhhh-hhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH
Q 009632           83 HAHVLLPPLETLC--TVEETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (530)
Q Consensus        83 ~~~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~  159 (530)
                      ....+.+.+...+  .|.++.||+.|+.++.++.+..+ +... ..+.+.+..++.|+++.++..+..++..+...-+..
T Consensus       143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~  221 (621)
T 2vgl_A          143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE  221 (621)
T ss_dssp             HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence            7888999999998  89999999999999999999543 3333 257788888888889999999999988877644332


Q ss_pred             ---HHHHHHHHHHhhcCCC-------------ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh---cC-------
Q 009632          160 ---LKTELRSIYTQLCQDD-------------MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT---QD-------  213 (530)
Q Consensus       160 ---~~~~l~~~l~~l~~d~-------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~---~d-------  213 (530)
                         ..+.+...+..++.+.             ++-.+-..++.++.++..- ++.....+.+.+..++   .+       
T Consensus       222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l  300 (621)
T 2vgl_A          222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKV  300 (621)
T ss_dssp             HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccc
Confidence               3344555555554321             5667777776666654321 1122233333333222   22       


Q ss_pred             --Cch--hHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc
Q 009632          214 --DQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL  289 (530)
Q Consensus       214 --~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  289 (530)
                        .+.  .|.-.++.++..+.   +...........+..++.++++.+|..++.++..++...+.........+.++..+
T Consensus       301 ~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L  377 (621)
T 2vgl_A          301 QHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL  377 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh
Confidence              122  56666666666553   33345556777888888888999999999999998765432122344567777888


Q ss_pred             C-CCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc
Q 009632          290 R-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  368 (530)
Q Consensus       290 ~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  368 (530)
                      + |++..||..++..+..++..   +. .+.++..+.+.+.+.+...|..++..++.++..+.++  ....+..+..++.
T Consensus       378 ~~d~d~~Ir~~aL~lL~~l~~~---~N-v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~  451 (621)
T 2vgl_A          378 KTERDVSVRQRAVDLLYAMCDR---SN-AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIR  451 (621)
T ss_dssp             TTCCCHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHH
T ss_pred             ccCCCHhHHHHHHHHHHHHcCh---hh-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHH
Confidence            8 99999999999988877643   22 3556666666666778889999999999988665432  2334556666666


Q ss_pred             CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHhhhChhh-H-HHHHHHHHHHH
Q 009632          369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGF-F-DDKLGALCMQW  444 (530)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~--~~R~~~~~~l~~l~~~~~~~~-~-~~~~~~~l~~~  444 (530)
                      +....+...++..+..++...  +...+..+..+.+.+.++..  .+-..+++.+|..+....... . ...++..+.+.
T Consensus       452 ~~~~~v~~ev~~~l~~ii~~~--~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~  529 (621)
T 2vgl_A          452 IAGDYVSEEVWYRVIQIVINR--DDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSK  529 (621)
T ss_dssp             HHGGGSCSHHHHHHHHHHGGG--CSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHhCC--hhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHH
Confidence            554455555655555555432  22334556667777777653  344556688888776543211 1 12445566666


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhcc--CCChHHHHHHHHHHHHHh
Q 009632          445 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--NPHYLYRMTILRAISLLA  503 (530)
Q Consensus       445 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~~i~  503 (530)
                      +.+....||..++.++..++...+.  ..+.+...+.....  |.|.++|+.|...+.-+.
T Consensus       530 ~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~  588 (621)
T 2vgl_A          530 FHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST  588 (621)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence            6788899999999999998776532  22334444444555  899999999998877654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.77  E-value=3.6e-17  Score=150.30  Aligned_cols=251  Identities=19%  Similarity=0.143  Sum_probs=170.8

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  244 (530)
                      ++.+...+.|+++.+|..++.+|+.+..        +..++.+.+++.|+++.+|..|+.+++.++..   ......+++
T Consensus        25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l~~   93 (280)
T 1oyz_A           25 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNVFN   93 (280)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHHHH
Confidence            4667777888999999999999988652        45778888888999999999999998877532   112233555


Q ss_pred             HHH-HhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHh
Q 009632          245 VIV-NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (530)
Q Consensus       245 ~l~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~  323 (530)
                      .+. .+.+|+++.||..++.+|+.+....+  .....+++.+...++|+++.||..++.+++.+..        +..+|.
T Consensus        94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~  163 (280)
T 1oyz_A           94 ILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL  163 (280)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence            555 35678888889888888888875321  1124567777888888888888888888876643        235666


Q ss_pred             HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (530)
Q Consensus       324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  403 (530)
                      +..+++|+++.||..++..++.+...      ....++.+..+++|+++.||..++.+|+.+..        +..+|.+.
T Consensus       164 L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~  229 (280)
T 1oyz_A          164 LINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLC  229 (280)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHH
Confidence            66777778888888888777766321      12455667777777777788877777776541        34566666


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC-CcHHHHHHHHHHH
Q 009632          404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNL  460 (530)
Q Consensus       404 ~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l  460 (530)
                      ..+++++  +|..++.+++.+..        ...+|.+..++.+ ++..++..++..+
T Consensus       230 ~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l  277 (280)
T 1oyz_A          230 DELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKL  277 (280)
T ss_dssp             HHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             HHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence            6666644  67777777766532        1345666666653 4455666665554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.76  E-value=5.6e-15  Score=159.08  Aligned_cols=509  Identities=10%  Similarity=0.041  Sum_probs=309.5

Q ss_pred             CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc-CC--------
Q 009632            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY-VG--------   79 (530)
Q Consensus         9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~-~~--------   79 (530)
                      ..+..++....++|...|  |...|.+.- . .|+ ....|...+. ..+.+.++|..++..|.+.+.. ..        
T Consensus         5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-~-~p~-~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l   78 (960)
T 1wa5_C            5 ETVAKFLAESVIASTAKT--SERNLRQLE-T-QDG-FGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNHLL   78 (960)
T ss_dssp             HHHHHHHHHTTSGGGHHH--HHHHHHHHH-T-STT-HHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHhh-c-CCC-HHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence            457778888889999998  888887652 1 121 2222222222 1234678999999999876542 11        


Q ss_pred             CccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC--
Q 009632           80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--  157 (530)
Q Consensus        80 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~--  157 (530)
                      +++....+=..+...+.+++..+|..+..++..++..--+ ..++.++|.+....++++...+..+..++..+.+...  
T Consensus        79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~  157 (960)
T 1wa5_C           79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPL  157 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTS
T ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            0111222222222233334589999999999999986444 3567788888888887777778888888887766432  


Q ss_pred             ---hHH-------HHHHH----HHHHh---hcCCCCh---hHH------HHHHHHHHHHHhhhcchhh---HHHHHHHHH
Q 009632          158 ---DIL-------KTELR----SIYTQ---LCQDDMP---MVR------RSAASNLGKFAATVEPAHL---KTDIMSIFE  208 (530)
Q Consensus       158 ---~~~-------~~~l~----~~l~~---l~~d~~~---~vR------~~a~~~l~~l~~~~~~~~~---~~~l~~~l~  208 (530)
                         ++.       .....    +.+..   .+.++..   .+|      ..+++++..+...-.++.+   .....+.+.
T Consensus       158 ~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~  237 (960)
T 1wa5_C          158 FRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFH  237 (960)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHH
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence               111       11222    32222   2444422   233      3344444433221112211   234455555


Q ss_pred             HhhcC----------Cc-----hhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcC-----CCCHHHHHHHHHHHH
Q 009632          209 DLTQD----------DQ-----DSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQ-----DKSWRVRYMVANQLY  266 (530)
Q Consensus       209 ~~~~d----------~~-----~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~-----d~~~~vr~~~~~~l~  266 (530)
                      +.+..          ++     +.+|+.+.+++..+....++.  .+...+++.+...+.     ..+..++..++..+.
T Consensus       238 ~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~  317 (960)
T 1wa5_C          238 KYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLT  317 (960)
T ss_dssp             HHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHH
T ss_pred             HHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHH
Confidence            54421          11     257888888888888765542  223334444444432     345678888888887


Q ss_pred             HHHHH------hCCcccccchH-HHHHHhcC-----------------------CCcHHHHHHHHHHHHHHHHhhCHHHH
Q 009632          267 ELCEA------VGPEPTRMDLV-PAYVRLLR-----------------------DNEAEVRIAAAGKVTKFCRILNPELA  316 (530)
Q Consensus       267 ~l~~~------~~~~~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~~  316 (530)
                      .+++.      +....+...++ +.++..+.                       +..+.+|.+|...+..++..++ +..
T Consensus       318 ~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v  396 (960)
T 1wa5_C          318 AVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLV  396 (960)
T ss_dssp             HHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHH
T ss_pred             HHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhH
Confidence            76532      11111222333 33333321                       1113578999999999999887 555


Q ss_pred             HhhhhHhHhHhcc------CCcHHHHHHHHHHHHhhcccc-----CHH------HHHHhHHHHHHHhhcCC---ChHHHH
Q 009632          317 IQHILPCVKELSS------DSSQHVRSALASVIMGMAPLL-----GKD------ATIEQLLPIFLSLLKDE---FPDVRL  376 (530)
Q Consensus       317 ~~~l~~~l~~~~~------d~~~~vr~~~~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~vr~  376 (530)
                      .+.+++.+.+.+.      +.+|+.|.+++..++.++...     +..      .+.+.+...+...++|+   .+.||.
T Consensus       397 ~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~  476 (960)
T 1wa5_C          397 TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRV  476 (960)
T ss_dssp             HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehH
Confidence            5677777766655      678999999999999986532     111      23333334455556777   889999


Q ss_pred             HHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC----------hh---hHHHHHHHHHHH
Q 009632          377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----------VG---FFDDKLGALCMQ  443 (530)
Q Consensus       377 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~----------~~---~~~~~~~~~l~~  443 (530)
                      .++.+++.+...+.++ ....+++.+...+.+++..+|..|+.++..++....          .+   .+...+++.+..
T Consensus       477 ~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~  555 (960)
T 1wa5_C          477 DAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIA  555 (960)
T ss_dssp             HHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHH
Confidence            9999999999887544 457788999888899999999999999999887422          22   244667777777


Q ss_pred             HhcCCc-----HHHHHHHHHHHHHHHHHhChhHHh--hhhHHHHHhh----ccC-CChHHHHHHHHHHHHHhhhcChH--
Q 009632          444 WLQDKV-----YSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEM----INN-PHYLYRMTILRAISLLAPVMGSE--  509 (530)
Q Consensus       444 ~l~d~~-----~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~----~~d-~~~~vr~~a~~~l~~i~~~~~~~--  509 (530)
                      ++....     ......+.++++.++...++....  ..+++.+...    .++ .+...+..++++++.++...+++  
T Consensus       556 ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~  635 (960)
T 1wa5_C          556 LILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL  635 (960)
T ss_dssp             HHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred             HHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH
Confidence            776531     114568889999998887754321  3344444433    233 46677888999999998875543  


Q ss_pred             -HHHhhHHHHHHhhccCC
Q 009632          510 -ITCSRLLPVVINASKDR  526 (530)
Q Consensus       510 -~~~~~~~p~l~~~l~D~  526 (530)
                       .+.+.++|.+...+...
T Consensus       636 ~~~~~~~~p~~~~iL~~~  653 (960)
T 1wa5_C          636 PLLVDSMMPTFLTVFSED  653 (960)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence             34667777777665443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.75  E-value=6.9e-15  Score=158.33  Aligned_cols=490  Identities=10%  Similarity=0.054  Sum_probs=305.5

Q ss_pred             HHHHHhc--ChhHHHHHHHhhcHHHHHHh-hC--------hHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCC
Q 009632           13 VLIDELK--NDDIQLRLNSIRRLSTIARA-LG--------EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG   80 (530)
Q Consensus        13 ~l~~~l~--~~~~~~R~~a~~~l~~~~~~-~~--------~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~   80 (530)
                      .|++-+.  +.+...|..|...+...... ..        ++..+..+...+.+ +.+++..+|..++.++..++..-. 
T Consensus        39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~-  117 (960)
T 1wa5_C           39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF-  117 (960)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC-
Confidence            3444443  34678999999999886543 11        12222233333333 234458899999999998887533 


Q ss_pred             ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----hh----h----hhhH---HHHHHHH---hcCCcc---
Q 009632           81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SD----L----VDWY---IPLVKRL---AAGEWF---  139 (530)
Q Consensus        81 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~----~----~~~l---~~~l~~l---~~~~~~---  139 (530)
                      +..|+.+++.+...+++.+...+..++.++..+++.+..    +.    .    ....   +.++...   ..++..   
T Consensus       118 p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~  197 (960)
T 1wa5_C          118 PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKA  197 (960)
T ss_dssp             TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CH
T ss_pred             ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            356899999999998888888999999999999997642    11    1    1111   1222222   333211   


Q ss_pred             chh------HHHHhHhhhhc-CCCChH---HHHHHHHHHHhhcCC-----------CC----hhHHHHHHHHHHHHHhhh
Q 009632          140 TAR------VSACGLFHIAY-PSAPDI---LKTELRSIYTQLCQD-----------DM----PMVRRSAASNLGKFAATV  194 (530)
Q Consensus       140 ~~r------~~~~~~l~~l~-~~~~~~---~~~~l~~~l~~l~~d-----------~~----~~vR~~a~~~l~~l~~~~  194 (530)
                      .+|      ..++.++..+. ...++.   ....+.+.+...+..           .+    +.+|+.++.++..+....
T Consensus       198 ~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~  277 (960)
T 1wa5_C          198 SLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRY  277 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence            123      22444444332 233332   334455655554321           11    468999999999988766


Q ss_pred             cch--hhHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHhhhcC------chhhhhccH-HHHHHhc----------
Q 009632          195 EPA--HLKTDIMSIFEDLTQ-----DDQDSVRLLAVEGCAALGKLLE------PQDCVAHIL-PVIVNFS----------  250 (530)
Q Consensus       195 ~~~--~~~~~l~~~l~~~~~-----d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~-~~l~~~~----------  250 (530)
                      ++.  .+.+.+++.+.+.+.     ..++.++..+++.+..+++.-.      ...+...++ +.+...+          
T Consensus       278 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w  357 (960)
T 1wa5_C          278 EDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELF  357 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHH
Confidence            542  234456666666554     3456889999999988864311      012222222 2222111          


Q ss_pred             -------------CCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC------CCcHHHHHHHHHHHHHHHHhh
Q 009632          251 -------------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR------DNEAEVRIAAAGKVTKFCRIL  311 (530)
Q Consensus       251 -------------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~  311 (530)
                                   .+..+..|.++...+..++..++ +...+.+++.+.+.+.      +++|..|.+|+.+++.++...
T Consensus       358 ~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~  436 (960)
T 1wa5_C          358 EDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING  436 (960)
T ss_dssp             TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred             hcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHh
Confidence                         12235689999999999998877 3334556676666665      677899999999999997542


Q ss_pred             -----CHH------HHHhhhhHhHhHhccCC---cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHH
Q 009632          312 -----NPE------LAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN  377 (530)
Q Consensus       312 -----~~~------~~~~~l~~~l~~~~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~  377 (530)
                           +..      .+.+.+...+...+.|+   ++.+|..++..++.+++.+.+ .+...+++.+.+.|.|++..||..
T Consensus       437 ~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V~~~  515 (960)
T 1wa5_C          437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVVYTY  515 (960)
T ss_dssp             CCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             ccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhHHHH
Confidence                 111      12121222222233555   899999999999999988764 567788999999999999999999


Q ss_pred             HHHhhHHhhhhhc----------hhH---HHhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHhhhChhh--HHHHH
Q 009632          378 IISKLDQVNQVIG----------IDL---LSQSLLPAIVELAEDRH-----WRVRLAIIEYIPLLASQLGVGF--FDDKL  437 (530)
Q Consensus       378 a~~~l~~l~~~~~----------~~~---~~~~l~~~l~~~~~~~~-----~~~R~~~~~~l~~l~~~~~~~~--~~~~~  437 (530)
                      |+.++..++....          .+.   +.+.+++.+..++....     ......++.+++.++...+.+.  +...+
T Consensus       516 A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l  595 (960)
T 1wa5_C          516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQL  595 (960)
T ss_dssp             HHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHH
T ss_pred             HHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            9999999887421          222   23556666666665531     1133577888888877766433  33445


Q ss_pred             HHHHHHHh----cC-CcHHHHHHHHHHHHHHHHHhChhH---HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          438 GALCMQWL----QD-KVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       438 ~~~l~~~l----~d-~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      ++.+...+    ++ .+...+..++++++.++...+++.   ..+.++|.+...+.....+....+.+.++.+...
T Consensus       596 ~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          596 LAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence            55444433    33 456788889999999998855432   2367788888877665556777788888877655

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.75  E-value=1.8e-16  Score=145.58  Aligned_cols=253  Identities=16%  Similarity=0.142  Sum_probs=165.7

Q ss_pred             chhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHH
Q 009632           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS  166 (530)
Q Consensus        87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~  166 (530)
                      -++.|...+.|+++.+|..|+.+|+.+..        ....+.+..+++++++.+|..++..++.+...  +.....+++
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~~~~~l~~   93 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KKCEDNVFN   93 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TTTHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--cccchHHHH
Confidence            34556666778888999998888888752        23456666677777777888888777776532  223444556


Q ss_pred             HHH-hhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHH
Q 009632          167 IYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV  245 (530)
Q Consensus       167 ~l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  245 (530)
                      .+. .+.+|+++.||..++.+|+.+....+  ...+.+++.+...+.|+++.||..|+.+++.++.        ...+|.
T Consensus        94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~  163 (280)
T 1oyz_A           94 ILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL  163 (280)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence            655 35677888888888888888764322  1234567777777888888888888887776543        236677


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHh
Q 009632          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK  325 (530)
Q Consensus       246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~  325 (530)
                      +..+++|+++.||..++.+++.+.    .  .....++.+...++|+++.||..++.+|+.+..        +..+|.+.
T Consensus       164 L~~~l~d~~~~vr~~a~~aL~~~~----~--~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~  229 (280)
T 1oyz_A          164 LINLLKDPNGDVRNWAAFAININK----Y--DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLC  229 (280)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHT----C--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhhc----c--CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHH
Confidence            777777777888888887777662    1  123566777777777777888877777776642        34455555


Q ss_pred             HhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC-CChHHHHHHHHhhH
Q 009632          326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLD  383 (530)
Q Consensus       326 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~  383 (530)
                      ..++|++  +|..++..++.+..        +..+|.+..++++ ++..++..++..+.
T Consensus       230 ~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          230 DELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            5555544  67777777766643        2456666666654 34556555555543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.68  E-value=8.6e-15  Score=158.28  Aligned_cols=487  Identities=10%  Similarity=0.006  Sum_probs=295.5

Q ss_pred             CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----CCCcc
Q 009632            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE   82 (530)
Q Consensus         7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~----~~~~~   82 (530)
                      ++..+..+++.+.++|+..|..|-+.|.++-..  | ..+..+...+.  .+.++++|..++..|.+.++.    +..++
T Consensus         5 d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~--p-~~w~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~   79 (971)
T 2x1g_F            5 DIARLEEAVVSFYRSNSQNQAITHEWLTDAEAS--P-QAWQFSWQLMQ--LGKSQEVQFFGAITLHSKLMKHWHEVPPEN   79 (971)
T ss_dssp             ------CTHHHHHTSTTTC----CHHHHHTTTS--T-HHHHHHHHHTC--TTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--H-HHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence            455566777777788988999999888765321  2 23333333332  246789999999999866542    22111


Q ss_pred             ---chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC------ccchhHHHHhHhhhhc
Q 009632           83 ---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE------WFTARVSACGLFHIAY  153 (530)
Q Consensus        83 ---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~------~~~~r~~~~~~l~~l~  153 (530)
                         ....++..+....++ ...||.....++..+++..-+  .+..+++.+....+++      +...+..+..++..+.
T Consensus        80 ~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~  156 (971)
T 2x1g_F           80 REELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIP  156 (971)
T ss_dssp             HHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhH
Confidence               234556665554433 589999999999999997654  4555566665555442      3345556666655443


Q ss_pred             CC----CCh-------H----HHHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHHHhh--hcchhhHHHHHHHHH
Q 009632          154 PS----APD-------I----LKTELRSIYTQLCQDD--------MPMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFE  208 (530)
Q Consensus       154 ~~----~~~-------~----~~~~l~~~l~~l~~d~--------~~~vR~~a~~~l~~l~~~--~~~~~~~~~l~~~l~  208 (530)
                      +.    -+.       +    ..+.+++.+..++.+.        .+.++..+++++..+...  .+.. ....+++.+.
T Consensus       157 EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~  235 (971)
T 2x1g_F          157 EEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLL  235 (971)
T ss_dssp             HHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHH
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHH
Confidence            21    110       1    2345666665554321        138999999999998873  4444 5566777766


Q ss_pred             Hhh----------------cCCchhHHHHHHHHHHHHhhhcCchh---hhhccHHHHHH-------hcCCCC---HHHHH
Q 009632          209 DLT----------------QDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVN-------FSQDKS---WRVRY  259 (530)
Q Consensus       209 ~~~----------------~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~-------~~~d~~---~~vr~  259 (530)
                      + +                .++++++|..|++++..+...-....   ....++|.+..       ...+.+   .....
T Consensus       236 ~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~  314 (971)
T 2x1g_F          236 E-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIV  314 (971)
T ss_dssp             H-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHH
T ss_pred             h-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHH
Confidence            6 4                12467899999999999987532211   22223333322       123333   24666


Q ss_pred             HHHHHHHHHHHHh----C----C-----cccccchHHHHHHhcC-----CCcHHHHHHHHHHHHHHHHhh-C--------
Q 009632          260 MVANQLYELCEAV----G----P-----EPTRMDLVPAYVRLLR-----DNEAEVRIAAAGKVTKFCRIL-N--------  312 (530)
Q Consensus       260 ~~~~~l~~l~~~~----~----~-----~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~-~--------  312 (530)
                      .+++.+..+++..    .    +     ......+++.+++...     ..+++|...++..+..+++.. +        
T Consensus       315 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~  394 (971)
T 2x1g_F          315 HIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKH  394 (971)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchH
Confidence            6777777776431    1    1     0112345566666542     246788888888887776622 1        


Q ss_pred             H-----HHHHhhhhHhHhHhcc---CC-----c-------HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC---
Q 009632          313 P-----ELAIQHILPCVKELSS---DS-----S-------QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD---  369 (530)
Q Consensus       313 ~-----~~~~~~l~~~l~~~~~---d~-----~-------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d---  369 (530)
                      .     ..+...+++.+...+.   |.     +       ...|..+...+..++..+| +...+.+++.+...+..   
T Consensus       395 ~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~  473 (971)
T 2x1g_F          395 KCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQR  473 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccC
Confidence            0     1122333343333221   11     1       1467778888888888777 55666777777777754   


Q ss_pred             --CChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChh-hHHHHHHHHHHH
Q 009632          370 --EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQ  443 (530)
Q Consensus       370 --~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~  443 (530)
                        .+|..|++++.+++.+++......  ..+.+++.+..+. .|++..+|..++.+++.++..++.. .+...++|.+..
T Consensus       474 ~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~  553 (971)
T 2x1g_F          474 HPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVR  553 (971)
T ss_dssp             CTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence              688999999999999987665422  2234555443433 2568999999999999999887642 345678888888


Q ss_pred             HhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccC--CChHHHHHHHHHHHHHhhhcC
Q 009632          444 WLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       444 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      .+ |  +.|+..|+.++..+++.++....  .+.++..+.++++.  -+...+..++++++.++..++
T Consensus       554 ~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~  618 (971)
T 2x1g_F          554 GL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR  618 (971)
T ss_dssp             HH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred             Hh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence            88 4  78999999999999988765422  25566666677766  357899999999999998776

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.68  E-value=3.8e-15  Score=133.27  Aligned_cols=204  Identities=16%  Similarity=0.190  Sum_probs=145.8

Q ss_pred             CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHh
Q 009632          234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRI  310 (530)
Q Consensus       234 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~  310 (530)
                      ++.+....+-+.+.+.++|.+|..|..++..|..+....+.  ......+++.+...+ +|++..||..++.+++.++..
T Consensus         8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~   87 (242)
T 2qk2_A            8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG   87 (242)
T ss_dssp             SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            34445555666677788888999999999999988877432  111245677777777 377778888888887777754


Q ss_pred             hCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc
Q 009632          311 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  390 (530)
Q Consensus       311 ~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  390 (530)
                      ++..                                     -..+...++|.++..++|.+..||.++..++..++...+
T Consensus        88 l~~~-------------------------------------~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~  130 (242)
T 2qk2_A           88 LAKR-------------------------------------FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS  130 (242)
T ss_dssp             HGGG-------------------------------------GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             Hhhh-------------------------------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence            4321                                     023455667777777777777777777777777776655


Q ss_pred             hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh----hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632          391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (530)
Q Consensus       391 ~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  466 (530)
                      .    +.++|.+...+++++|.+|..++.+++.+....+++    .+...++|.+..++.|+.+.||.+|..+++.++..
T Consensus       131 ~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          131 L----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             H----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            3    457777777888888888888888888877665422    35567888888888888888888888888888888


Q ss_pred             hChhHHhhhhHHH
Q 009632          467 FGPEWAMQHITPQ  479 (530)
Q Consensus       467 ~~~~~~~~~i~~~  479 (530)
                      +|++.. ..+++.
T Consensus       207 vg~~~~-~~~l~~  218 (242)
T 2qk2_A          207 MGDKAV-TPLLAD  218 (242)
T ss_dssp             HCHHHH-GGGGTT
T ss_pred             cCHHHH-HHHHHh
Confidence            887643 334444

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.68  E-value=3.7e-13  Score=145.65  Aligned_cols=491  Identities=11%  Similarity=0.071  Sum_probs=306.0

Q ss_pred             CCCCCcCcHHHHHHH-hcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----
Q 009632            3 MVDEPLYPIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----   77 (530)
Q Consensus         3 ~~~~~~~~~~~l~~~-l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~----   77 (530)
                      |...++..+..+++. ..++|+..|..|-+.|.++-..  | ..+..+...+.  .+.++++|..++..|.+.++.    
T Consensus        18 m~~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p-~~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~   92 (963)
T 2x19_B           18 ALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVS--P-QAWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSD   92 (963)
T ss_dssp             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--T-THHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             CCHhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--H-HHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHh
Confidence            444566677788877 4468999999999999876442  2 23333333332  256789999999999866542    


Q ss_pred             CCCcc---chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcC-----CccchhHHHHhHh
Q 009632           78 VGGVE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-----EWFTARVSACGLF  149 (530)
Q Consensus        78 ~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~~~~~l  149 (530)
                      +..++   ....++..+.... .....||.....++..+++.--++. +..+++.+....++     ++...+..+..++
T Consensus        93 l~~~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL  170 (963)
T 2x19_B           93 IPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELL  170 (963)
T ss_dssp             SCGGGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence            22111   2344555554432 2358999999999999998744433 55566666666654     2333455555555


Q ss_pred             hhhcC----C-C--------C---hHHHHHHHHHHHhhcCCCCh--hHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHHh
Q 009632          150 HIAYP----S-A--------P---DILKTELRSIYTQLCQDDMP--MVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDL  210 (530)
Q Consensus       150 ~~l~~----~-~--------~---~~~~~~l~~~l~~l~~d~~~--~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~  210 (530)
                      ..+.+    . .        .   ....+.+++.+..++.+.+.  .++..+++++..++. .+... ....+++.+.+.
T Consensus       171 ~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~  249 (963)
T 2x19_B          171 TVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAA  249 (963)
T ss_dssp             HHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHH
T ss_pred             HhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHH
Confidence            54432    1 0        0   12456778888877765432  488889999887776 33321 225678887777


Q ss_pred             hcCCchhHHHHHHHHHHHHhhhcCchh---hhhccHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHhCCc-----
Q 009632          211 TQDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVN-------FSQDKSWRVRYMVANQLYELCEAVGPE-----  275 (530)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~-------~~~d~~~~vr~~~~~~l~~l~~~~~~~-----  275 (530)
                      +.  ++++|..|++++..+.....+..   ....+++.+..       ...+.+......+++.+..++......     
T Consensus       250 l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~  327 (963)
T 2x19_B          250 LQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV  327 (963)
T ss_dssp             TT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             hC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence            75  46799999999999987543221   12222232221       122333445566677777766432111     


Q ss_pred             ---ccccchHHHHHHhcCC-----CcHHHHHHHHHHHHHHHHhhC-------H------HHHHhhhhHhHhHhccCC---
Q 009632          276 ---PTRMDLVPAYVRLLRD-----NEAEVRIAAAGKVTKFCRILN-------P------ELAIQHILPCVKELSSDS---  331 (530)
Q Consensus       276 ---~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~~-------~------~~~~~~l~~~l~~~~~d~---  331 (530)
                         .....++..+++...+     .++++...++..+..+++...       +      ..+...+++.+...+..+   
T Consensus       328 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~  407 (963)
T 2x19_B          328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE  407 (963)
T ss_dssp             GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             cchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence               1123455666665554     345666666666666655221       0      012223333332222110   


Q ss_pred             -----------cH-HHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhh----cCCChHHHHHHHHhhHHhhhhhchhH--
Q 009632          332 -----------SQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGIDL--  393 (530)
Q Consensus       332 -----------~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~~--  393 (530)
                                 ++ ..|..+...+..++...+ +...+.+.+.+...+    .+.+|..|++++.+++.+++....+.  
T Consensus       408 ~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~  486 (963)
T 2x19_B          408 EYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSD  486 (963)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCS
T ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhH
Confidence                       11 346677777777777666 345566777777777    67789999999999999987765321  


Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh-hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH
Q 009632          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  472 (530)
Q Consensus       394 ~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~  472 (530)
                      ....+++.+..+ .+++..+|..++.+++.++..++.. .+...+++.+...+.+  +.|+..|+.++..+++..+....
T Consensus       487 ~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~  563 (963)
T 2x19_B          487 VVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP  563 (963)
T ss_dssp             HHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred             HHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence            223344433322 3457889999999999999876532 3456678888888876  78999999999999988764421


Q ss_pred             --hhhhHHHHHhhccC--CChHHHHHHHHHHHHHhhhcC
Q 009632          473 --MQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       473 --~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~~~~~  507 (530)
                        .+.++..+..+++.  -+...|..++++++.++...+
T Consensus       564 p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~  602 (963)
T 2x19_B          564 PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ  602 (963)
T ss_dssp             TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence              25566666666664  356889999999999998776

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.68  E-value=3.6e-15  Score=133.38  Aligned_cols=193  Identities=13%  Similarity=0.136  Sum_probs=156.9

Q ss_pred             HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhc-CCChHHHHHHHHhhHHhhhhhchh-
Q 009632          317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID-  392 (530)
Q Consensus       317 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-  392 (530)
                      ...+-+.+.+.++|++|+.|..++..+..+++..+.  ......+++.+...+. |.+..||..++.+++.++..+|.. 
T Consensus        13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~   92 (242)
T 2qk2_A           13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF   92 (242)
T ss_dssp             GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence            345555666666777788777777777776554211  1113567788888894 999999999999999999988864 


Q ss_pred             -HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-
Q 009632          393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-  470 (530)
Q Consensus       393 -~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-  470 (530)
                       .+...++|.+.+.+.|++..+|..+..++..++...+.    +.++|.+...+.++++.||..++..++.+...+++. 
T Consensus        93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence             34578999999999999999999999999999987763    458899999999999999999999999988776532 


Q ss_pred             ---HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHh
Q 009632          471 ---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS  513 (530)
Q Consensus       471 ---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~  513 (530)
                         .....++|.+..+++|+++.||..|..+++.++..+|.+.+.+
T Consensus       169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~  214 (242)
T 2qk2_A          169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTP  214 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred             ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHH
Confidence               3457899999999999999999999999999999999775533

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.66  E-value=9.7e-15  Score=127.84  Aligned_cols=185  Identities=21%  Similarity=0.213  Sum_probs=124.1

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccH
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  243 (530)
                      .++.+..++.|+++.+|..++..|+.+..        +..++.+.+.+.|+++.||..++.+++.+..        ...+
T Consensus        20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~   83 (211)
T 3ltm_A           20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV   83 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence            34556666677788888888777776532        2455667777777777788887777777642        2356


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHh
Q 009632          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (530)
Q Consensus       244 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~  323 (530)
                      +.+..+++|+++.||..++.+++.+.        ....++.+..++.|+++.||..++.+|+.+..        +..++.
T Consensus        84 ~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~  147 (211)
T 3ltm_A           84 EPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP  147 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence            66777777777778877777777663        23456777777777777777777777777632        234566


Q ss_pred             HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  388 (530)
                      +..+++|+++.||..++..++.+..        +...+.+..+++|+++.||..|..+|..+...
T Consensus       148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            6666677777777777777777642        34556666677777777777777777766544

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.65  E-value=6.4e-13  Score=144.34  Aligned_cols=491  Identities=9%  Similarity=0.056  Sum_probs=307.6

Q ss_pred             CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----CCCcc
Q 009632            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE   82 (530)
Q Consensus         7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~----~~~~~   82 (530)
                      ++..+..+++.+.+++...|..|-+.|.++-..  | ..+..+...+.  .+.++++|..++..|.+.+..    +..++
T Consensus        14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~--~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~   88 (1049)
T 3m1i_C           14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDH   88 (1049)
T ss_dssp             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHH--HCSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred             cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence            556677888888888888999999999876432  2 23333333332  245889999999999876542    22111


Q ss_pred             ---chhcchhHHHhhhccc-----chHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632           83 ---HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (530)
Q Consensus        83 ---~~~~l~~~l~~l~~d~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~  154 (530)
                         ....++..+.....++     +..+|...+.++..+++.--+ ..++.+++.+....+ .+...+..+...+..+.+
T Consensus        89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~e  166 (1049)
T 3m1i_C           89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSE  166 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHH
Confidence               1234444444333222     478999999999999987433 335556666666665 333345444444444332


Q ss_pred             C--------CChH-----------HHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHH-hhc
Q 009632          155 S--------APDI-----------LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFED-LTQ  212 (530)
Q Consensus       155 ~--------~~~~-----------~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~-~~~  212 (530)
                      .        .+..           ..+.+++.+..++.+ .+..++..+++++..+....+... +.+.+++.+.+ ++.
T Consensus       167 ev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~  246 (1049)
T 3m1i_C          167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT  246 (1049)
T ss_dssp             HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH
T ss_pred             HHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC
Confidence            1        1111           123345555555443 457899999999998877665432 23446666553 333


Q ss_pred             CCchhHHHHHHHHHHHHhhhc-Cch--hhhh-------ccHHHHHH--------------hcCCCCHHHHHHHHHHHHHH
Q 009632          213 DDQDSVRLLAVEGCAALGKLL-EPQ--DCVA-------HILPVIVN--------------FSQDKSWRVRYMVANQLYEL  268 (530)
Q Consensus       213 d~~~~vr~~a~~~l~~l~~~~-~~~--~~~~-------~~~~~l~~--------------~~~d~~~~vr~~~~~~l~~l  268 (530)
                        ++.+|..|++++..+...- ++.  .+..       .++..+..              ..++.++.....+++.+..+
T Consensus       247 --~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~  324 (1049)
T 3m1i_C          247 --SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY  324 (1049)
T ss_dssp             --SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred             --CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence              6789999999999988652 221  0111       12222211              11344566667777777666


Q ss_pred             HHHh----CC-c---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh----C-H---HHHHhhhhHhHhHhcc---
Q 009632          269 CEAV----GP-E---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----N-P---ELAIQHILPCVKELSS---  329 (530)
Q Consensus       269 ~~~~----~~-~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~-~---~~~~~~l~~~l~~~~~---  329 (530)
                      +...    .. .   .....+++.+++....++.++...++..+..+++.+    . .   ..+...+++.+...+.   
T Consensus       325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e  404 (1049)
T 3m1i_C          325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE  404 (1049)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5432    11 1   112345677777777778899999998888887732    1 1   1233444444433221   


Q ss_pred             CC-------------------cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc--CCChHHHHHHHHhhHHhhhh
Q 009632          330 DS-------------------SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       330 d~-------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~  388 (530)
                      |.                   .|..|..+...+..++.. +.......+.+.+...+.  ..+|..|++++.+++.+.+.
T Consensus       405 d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~  483 (1049)
T 3m1i_C          405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT  483 (1049)
T ss_dssp             TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred             ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence            10                   134566667777777644 445566777777777775  36789999999999998776


Q ss_pred             hchh---HHHhhHHHHHHHHhc-----CCChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632          389 IGID---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (530)
Q Consensus       389 ~~~~---~~~~~l~~~l~~~~~-----~~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~  459 (530)
                      ++..   .+...+++.+..+..     +++..+|..++.+++..+..+.. ..+...+++.++..+.|+++.||..|+.+
T Consensus       484 ~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~a  563 (1049)
T 3m1i_C          484 MSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT  563 (1049)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             cCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            5543   223556666655432     24556676788999988776543 23556688888889999999999999999


Q ss_pred             HHHHHHHhChhHH----------hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632          460 LKRLAEEFGPEWA----------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       460 l~~l~~~~~~~~~----------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      +..++...+....          .+.++..+...+++.+.+.+....++++.++...+
T Consensus       564 l~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            9999998875532          24556666666666666677888999999998877

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.65  E-value=1.1e-14  Score=127.40  Aligned_cols=184  Identities=20%  Similarity=0.205  Sum_probs=92.7

Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhh
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  321 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~  321 (530)
                      .++.+...++|+++.+|..++..|+.+.        ....++.+.+++.|+++.||..++.+|+.+..        +..+
T Consensus        20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~   83 (211)
T 3ltm_A           20 KVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV   83 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence            4455555555555666665555555442        12345555555555555666666555555432        2234


Q ss_pred             HhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHH
Q 009632          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (530)
Q Consensus       322 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  401 (530)
                      +.+...++|+++.+|..++..++.+..        ...++.+..+++|+++.||..++.+++.+..        +..++.
T Consensus        84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~  147 (211)
T 3ltm_A           84 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP  147 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence            444444555555555555555555432        1233445555555555555555555555421        234444


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       402 l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  465 (530)
                      +..+++|+++.+|..++.+++.+..        ...++.+..++.|+++.||..|..+|+.+..
T Consensus       148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            5555555555555555555555421        2344445555555555555555555555443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.65  E-value=1.9e-14  Score=124.91  Aligned_cols=186  Identities=22%  Similarity=0.219  Sum_probs=130.5

Q ss_pred             HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhh
Q 009632          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA  240 (530)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (530)
                      .....+.+.++++|+++.+|..++..|+.+..        +..++.+.+.+.|+++.+|..|+.+++.+..        .
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H
Confidence            34556677777788888888888888876542        2345667777778888888888887777642        2


Q ss_pred             ccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhh
Q 009632          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (530)
Q Consensus       241 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  320 (530)
                      ..++.+...++|+++.||..++.+|+.+.        ....++.+..++.|+++.||..++.+++.+..        +..
T Consensus        76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~  139 (201)
T 3ltj_A           76 RAVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA  139 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence            35677777777888888888888777763        23456777777788888888888888777642        345


Q ss_pred             hHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (530)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (530)
                      ++.+..+++|+++.+|..++..++.+..        ....+.+..+++|+++.||..|..+|+.+.
T Consensus       140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          140 VEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            6666677777777888887777777632        235566667777777777777777776653

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.65  E-value=5.9e-13  Score=144.57  Aligned_cols=445  Identities=8%  Similarity=-0.017  Sum_probs=287.2

Q ss_pred             cccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhh----cChh---hhhhhHH
Q 009632           55 ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYI  127 (530)
Q Consensus        55 ~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~----~~~~---~~~~~l~  127 (530)
                      .+.+++...|+.|-..|..+-+.   ++.+..+..++.   ++.+..+|..|+..|.+.++.    ++++   .++..++
T Consensus        24 ~~~~p~~~~r~~Ae~~L~~~~~~---p~~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll   97 (1049)
T 3m1i_C           24 TFYQGSGVQQKQAQEILTKFQDN---PDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV   97 (1049)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHS---TTGGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred             HHhCCChHHHHHHHHHHHHHHhC---chHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence            33345556888888888877552   344555544443   356889999999999997753    3332   2344566


Q ss_pred             HHHHHHhcCC-----ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc------
Q 009632          128 PLVKRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------  196 (530)
Q Consensus       128 ~~l~~l~~~~-----~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------  196 (530)
                      ..+.....++     +..+|...+.+++.++..--++.++++++.+..+++ .++..+..+...|..+.+.+..      
T Consensus        98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~  176 (1049)
T 3m1i_C           98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQM  176 (1049)
T ss_dssp             HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred             HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhh
Confidence            6655444333     356788888888888766444667778888888776 5666777788888877754331      


Q ss_pred             ---------h---hhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCchh-hhhccHHHHHH-hcCCCCHHHHHHH
Q 009632          197 ---------A---HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIVN-FSQDKSWRVRYMV  261 (530)
Q Consensus       197 ---------~---~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~-~~~d~~~~vr~~~  261 (530)
                               +   ...+.+++.+.+.+.+. +..++..+++++..+....+... +.+.+++.+.+ ++.  ++.+|..+
T Consensus       177 ~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a  254 (1049)
T 3m1i_C          177 TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAIT  254 (1049)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHH
Confidence                     0   11234555556666543 46799999999988877655322 33456666653 332  67899999


Q ss_pred             HHHHHHHHHHh-CCc--ccccc---hHHHHHHh------------------cCCCcHHHHHHHHHHHHHHHHhhC-----
Q 009632          262 ANQLYELCEAV-GPE--PTRMD---LVPAYVRL------------------LRDNEAEVRIAAAGKVTKFCRILN-----  312 (530)
Q Consensus       262 ~~~l~~l~~~~-~~~--~~~~~---l~~~l~~~------------------l~d~~~~vr~~a~~~l~~~~~~~~-----  312 (530)
                      ++++..+...- ++.  ....+   +.+.++..                  -.+.+.++.....+.+..+++...     
T Consensus       255 ~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~  334 (1049)
T 3m1i_C          255 LKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLES  334 (1049)
T ss_dssp             HHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999888651 121  01111   11212221                  134456666666666655544221     


Q ss_pred             ---HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc-----C---HHHHHHhHHHHHHHhhcC---------C--
Q 009632          313 ---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-----G---KDATIEQLLPIFLSLLKD---------E--  370 (530)
Q Consensus       313 ---~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~---~~~~~~~l~~~l~~~l~d---------~--  370 (530)
                         .......+++.+......++..+...+++.+..++...     .   ...+...+++.++..+.-         +  
T Consensus       335 ~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~  414 (1049)
T 3m1i_C          335 DESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEG  414 (1049)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTS
T ss_pred             ChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCC
Confidence               11223456666666666778889999998888876521     1   123556666776665521         0  


Q ss_pred             --------C---hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhhChh---hHH
Q 009632          371 --------F---PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVG---FFD  434 (530)
Q Consensus       371 --------~---~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~--~~~~~~R~~~~~~l~~l~~~~~~~---~~~  434 (530)
                              +   +..|..+...+..++...+ +...+.+.+.+.+.+.  ..+|+.|.+++.+++.++..++..   .+.
T Consensus       415 e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l  493 (1049)
T 3m1i_C          415 EIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV  493 (1049)
T ss_dssp             CEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred             cchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH
Confidence                    1   1446677778888775444 4445667777766665  468999999999999998766543   335


Q ss_pred             HHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhChh-HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632          435 DKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       435 ~~~~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      ..+++.+..+..     |+.+.||..++.++|.+...+... .....+++.+...+.|++..||..|+.++.++++..+.
T Consensus       494 ~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          494 VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            566776666442     456677778999999988776433 23366788888888999999999999999999998765


Q ss_pred             H
Q 009632          509 E  509 (530)
Q Consensus       509 ~  509 (530)
                      .
T Consensus       574 ~  574 (1049)
T 3m1i_C          574 H  574 (1049)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.65  E-value=3e-12  Score=138.49  Aligned_cols=492  Identities=11%  Similarity=0.077  Sum_probs=293.4

Q ss_pred             HHHHHHhhcHHHHHH--hhChHhhhhccccccccc----------------cCCchHHHHHHHHHHhcccccCCCccc--
Q 009632           24 QLRLNSIRRLSTIAR--ALGEERTRKELIPFLSEN----------------NDDDDEVLLAMAEELGVFIPYVGGVEH--   83 (530)
Q Consensus        24 ~~R~~a~~~l~~~~~--~~~~~~~~~~l~~~l~~~----------------~d~~~~vr~~~~~~l~~~~~~~~~~~~--   83 (530)
                      ..+..+++++.....  ..+.. ....+++.+..+                .++++++|..+..++..+...-...++  
T Consensus       204 ~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~  282 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPK  282 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHH
T ss_pred             hHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHH
Confidence            678888888877655  23323 334455544321                125778999999999887763221121  


Q ss_pred             -hhcchhHHHh----h---hcccc---hHHHHHHHHHHHHHHhhcChh-------------hhhhhHHHHHHHHhcC---
Q 009632           84 -AHVLLPPLET----L---CTVEE---TCVRDKAVESLCRIGSQMRES-------------DLVDWYIPLVKRLAAG---  136 (530)
Q Consensus        84 -~~~l~~~l~~----l---~~d~~---~~vR~~a~~~l~~l~~~~~~~-------------~~~~~l~~~l~~l~~~---  136 (530)
                       ...++|.+..    .   ..+++   .......++.+..+++.....             .....+++.+..+...   
T Consensus       283 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~  362 (971)
T 2x1g_F          283 TAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGI  362 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCC
Confidence             2222332222    1   13334   266666677777776432211             1111234444444422   


Q ss_pred             --CccchhHHHHhHhhhhcCCC---------Ch------HHHHHHHHHHHhhcC---CC-----C-------hhHHHHHH
Q 009632          137 --EWFTARVSACGLFHIAYPSA---------PD------ILKTELRSIYTQLCQ---DD-----M-------PMVRRSAA  184 (530)
Q Consensus       137 --~~~~~r~~~~~~l~~l~~~~---------~~------~~~~~l~~~l~~l~~---d~-----~-------~~vR~~a~  184 (530)
                        .++.++..++..+..+....         ..      .....+++.+...+.   |.     +       ...|+++.
T Consensus       363 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~  442 (971)
T 2x1g_F          363 YPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDIS  442 (971)
T ss_dssp             TTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHH
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHH
Confidence              45677887777765553310         11      123344454444332   11     1       14788888


Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHhhcC-----CchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcC-CCCHH
Q 009632          185 SNLGKFAATVEPAHLKTDIMSIFEDLTQD-----DQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQ-DKSWR  256 (530)
Q Consensus       185 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~-d~~~~  256 (530)
                      ..+..++...+ +...+.+++.+.+.+..     .++..|++++.+++.+++.+.+.  ...+.+++.+..+.. |.++.
T Consensus       443 ~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~  521 (971)
T 2x1g_F          443 DTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVK  521 (971)
T ss_dssp             HHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHH
T ss_pred             HHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHH
Confidence            89988887766 44556666766666543     57889999999999999887652  234456665555542 56899


Q ss_pred             HHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccC--C
Q 009632          257 VRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSD--S  331 (530)
Q Consensus       257 vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d--~  331 (530)
                      ||..++.+++.++..++.. .+...+++.+++.+ |  +.|+..|+.++..+++.++..  .+.+.++..+.+++..  -
T Consensus       522 vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~  598 (971)
T 2x1g_F          522 LLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRM  598 (971)
T ss_dssp             HHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence            9999999999999988743 34567888888888 4  789999999999999877544  3334455555555554  3


Q ss_pred             cHHHHHHHHHHHHhhccccCHHH---HHHhHHHHHH----HhhcCC--ChHHHHHHHHhhHHhhhh---hch--------
Q 009632          332 SQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFL----SLLKDE--FPDVRLNIISKLDQVNQV---IGI--------  391 (530)
Q Consensus       332 ~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~----~~l~d~--~~~vr~~a~~~l~~l~~~---~~~--------  391 (530)
                      +...+..+.++++.++...+.+.   +...+++.+.    ..++..  +..-+......++.++..   ++.        
T Consensus       599 ~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~  678 (971)
T 2x1g_F          599 KNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATD  678 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccc
Confidence            56889999999999887665222   2333333333    333333  344455555555555433   321        


Q ss_pred             -------hHHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 009632          392 -------DLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNL  460 (530)
Q Consensus       392 -------~~~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l  460 (530)
                             ..+.+.++|.+...+.+  .+..+...++.+++.++..+|.++  +...+++.+...+.....   ..++..+
T Consensus       679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~  755 (971)
T 2x1g_F          679 QPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEIS  755 (971)
T ss_dssp             -----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHH
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHH
Confidence                   11235677777766643  356899999999999998887554  456667777666654322   3578888


Q ss_pred             HHHHHHhChhH-----Hh---hhhHHHHHhhccC-------CChHHHHHHHHHHHHHhhhcChHHH-----HhhHHHHHH
Q 009632          461 KRLAEEFGPEW-----AM---QHITPQVLEMINN-------PHYLYRMTILRAISLLAPVMGSEIT-----CSRLLPVVI  520 (530)
Q Consensus       461 ~~l~~~~~~~~-----~~---~~i~~~l~~~~~d-------~~~~vr~~a~~~l~~i~~~~~~~~~-----~~~~~p~l~  520 (530)
                      +.++..+|.+.     ..   ..+...+..+++.       .+.+++..+...+..+....+...+     ...+++...
T Consensus       756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~  835 (971)
T 2x1g_F          756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQ  835 (971)
T ss_dssp             HHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHH
T ss_pred             HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence            88888887631     11   2222333333322       3678999999999999887665444     455555554


Q ss_pred             hhc
Q 009632          521 NAS  523 (530)
Q Consensus       521 ~~l  523 (530)
                      ..+
T Consensus       836 ~~l  838 (971)
T 2x1g_F          836 RGM  838 (971)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            444

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.64  E-value=4.7e-12  Score=136.96  Aligned_cols=480  Identities=11%  Similarity=0.069  Sum_probs=295.0

Q ss_pred             ChhHHHHHHHhhcHHHHHHh----hChH---hhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHH
Q 009632           20 NDDIQLRLNSIRRLSTIARA----LGEE---RTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE   92 (530)
Q Consensus        20 ~~~~~~R~~a~~~l~~~~~~----~~~~---~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~   92 (530)
                      +.+...|..|...|......    ++++   .+++.+++.+.+..++.+.+|..++.++..+++.-. ++.|+.+++.+.
T Consensus        69 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~-p~~Wp~~l~~l~  147 (963)
T 2x19_B           69 DKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMM-PDAWPCAVADMV  147 (963)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT-TTTSTTHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC-ccccchHHHHHH
Confidence            67888999999999886542    2222   234455565554333468899999999998887533 334777777777


Q ss_pred             hhhcc-----cchHHHHHHHHHHHHHHhhcChh---------------hhhhhHHHHHHHHhcCCcc--chhHHHHhHhh
Q 009632           93 TLCTV-----EETCVRDKAVESLCRIGSQMRES---------------DLVDWYIPLVKRLAAGEWF--TARVSACGLFH  150 (530)
Q Consensus        93 ~l~~d-----~~~~vR~~a~~~l~~l~~~~~~~---------------~~~~~l~~~l~~l~~~~~~--~~r~~~~~~l~  150 (530)
                      ..++.     ++...+..++..|..+.+.....               ...+.+.+++.....+...  .++..+..++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~  227 (963)
T 2x19_B          148 RLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFS  227 (963)
T ss_dssp             HHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            76654     35668889999999888643111               1123356666666655422  25666666665


Q ss_pred             hhcCCCChH--HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHh-------hcCCchhH
Q 009632          151 IAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDL-------TQDDQDSV  218 (530)
Q Consensus       151 ~l~~~~~~~--~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~-------~~d~~~~v  218 (530)
                      .... .+..  ....+++.+...+.  ++++|..+++++..+...-.+.   .....+++.+...       ..+.+...
T Consensus       228 ~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~  304 (963)
T 2x19_B          228 SWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMET  304 (963)
T ss_dssp             HHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHH
T ss_pred             HHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHH
Confidence            4444 3322  23777888887774  6889999999999998753322   1222333333322       22333344


Q ss_pred             HHHHHHHHHHHhhhcCc--------hhhhhccHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHhCC------c----
Q 009632          219 RLLAVEGCAALGKLLEP--------QDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGP------E----  275 (530)
Q Consensus       219 r~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~~~------~----  275 (530)
                      .....+.+..+++....        ......+++.+.....+     .++.++..++..+..+++....      .    
T Consensus       305 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~  384 (963)
T 2x19_B          305 SHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQ  384 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            44444555555543211        11122345555544443     2344565566655555552210      0    


Q ss_pred             ---ccccchHHHHHHhcCCCc---------------HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhc----cCCcH
Q 009632          276 ---PTRMDLVPAYVRLLRDNE---------------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS----SDSSQ  333 (530)
Q Consensus       276 ---~~~~~l~~~l~~~l~d~~---------------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~----~d~~~  333 (530)
                         .....+++.++..+..++               .+.|.++...+..++...+.+ ..+.+++.+...+    .+.+|
T Consensus       385 ~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w  463 (963)
T 2x19_B          385 VYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSW  463 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCch
Confidence               112234444444442111               123677777888888777744 3456666666655    67899


Q ss_pred             HHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh-HHHhhHHHHHHHHhcCCC
Q 009632          334 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRH  410 (530)
Q Consensus       334 ~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~~~~  410 (530)
                      +.|.+++.+++.++..+..  ..+...+++.+.. +.++.+.||..++.+++.+...++.. .+.+.+++.+...+.+  
T Consensus       464 ~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--  540 (963)
T 2x19_B          464 QHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--  540 (963)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--
Confidence            9999999999999887653  2345556664443 34567889999999999999877643 3457788888888766  


Q ss_pred             hHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhCh-hH--HhhhhHHHHHhh
Q 009632          411 WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGP-EW--AMQHITPQVLEM  483 (530)
Q Consensus       411 ~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~-~~--~~~~i~~~l~~~  483 (530)
                      ..+|..|+.++..++..++...  +.+.++..+..++..  -....|..+.++++.++...+. ..  ..+.+++.+...
T Consensus       541 ~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~  620 (963)
T 2x19_B          541 PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ  620 (963)
T ss_dssp             GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            7899999999999998766432  346677777777663  3568999999999999977662 21  113344433332


Q ss_pred             c----cC-CChHH---HHHHHHHHHHHhhhcC
Q 009632          484 I----NN-PHYLY---RMTILRAISLLAPVMG  507 (530)
Q Consensus       484 ~----~d-~~~~v---r~~a~~~l~~i~~~~~  507 (530)
                      +    +. .+.+.   +..++.+++.+...++
T Consensus       621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~  652 (963)
T 2x19_B          621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD  652 (963)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            2    22 23333   3466777777776654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.64  E-value=2.5e-14  Score=124.17  Aligned_cols=185  Identities=21%  Similarity=0.217  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 009632          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM  279 (530)
Q Consensus       200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  279 (530)
                      .+...+.+++.+.|+++.+|..|+..++.+..        ...++.+...++|+++.+|..++..++.+.        ..
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DE   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CG
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CH
Confidence            45567778888888888888888888877653        235667777777888888888888777763        23


Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhH
Q 009632          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  359 (530)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  359 (530)
                      ..++.+...+.|+++.||..++.+|+.+..        +..++.+..++.|+++.+|..++..++.+..        ...
T Consensus        76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~  139 (201)
T 3ltj_A           76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA  139 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence            456777778888888888888888877642        2345666666677777788777777777642        234


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 009632          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  424 (530)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l  424 (530)
                      ++.+..+++|+++.||..++.+++.+..        +..++.+..+++++++.+|..++.+++.+
T Consensus       140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          140 VEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            5667777777777777777777776522        34556666666677777777777777654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.56  E-value=3.4e-13  Score=121.62  Aligned_cols=227  Identities=12%  Similarity=0.080  Sum_probs=168.8

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHH
Q 009632          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DAT  355 (530)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~  355 (530)
                      +|.+++++.++++++|..|+.++..++...+..   ......+|.+.+++++.+..+|..++..+..++.....   ...
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            566777777777788888888887776543211   12235677777788888888888888888888754211   112


Q ss_pred             HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh--
Q 009632          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--  430 (530)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~--  430 (530)
                      ....+|.+..+++++++.+|..++.++..++.....   .......+|.+.+++.++++.+|..++.+++.++.....  
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  163 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI  163 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            335788899999999999999999999998843211   112246789999999999999999999999999763221  


Q ss_pred             -hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632          431 -GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (530)
Q Consensus       431 -~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~  506 (530)
                       .......+|.+..++.++++.+|..|+.+++.++.....   ......+++.+.+++++++..+|..|+++++++....
T Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence             122345889999999999999999999999999852211   1223567899999999999999999999999998765


Q ss_pred             Ch
Q 009632          507 GS  508 (530)
Q Consensus       507 ~~  508 (530)
                      +.
T Consensus       244 ~~  245 (252)
T 4hxt_A          244 WL  245 (252)
T ss_dssp             BC
T ss_pred             Cc
Confidence            54

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.56  E-value=8.3e-13  Score=129.45  Aligned_cols=337  Identities=10%  Similarity=0.055  Sum_probs=194.7

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhhh
Q 009632          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCV  239 (530)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~  239 (530)
                      |.+..++.++++.++..|+.+|..++..-++   .......+|.+.+++.++++.++..|+.+|..++..-++   ....
T Consensus         5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~   84 (457)
T 1xm9_A            5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3344444455555666666666655532211   112233556666666665566666666666666542111   1112


Q ss_pred             hccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC-c-ccccchHHHHHHhc--------CC--------CcHHHHHHH
Q 009632          240 AHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-E-PTRMDLVPAYVRLL--------RD--------NEAEVRIAA  300 (530)
Q Consensus       240 ~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l--------~d--------~~~~vr~~a  300 (530)
                      ...+|.+.+++. +.+..++..++.+|.+++..-.. . ... ..+|.+++++        .+        .++++...|
T Consensus        85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a  163 (457)
T 1xm9_A           85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA  163 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred             cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence            335566666665 55566666666666666543100 0 112 4556666666        11        134455566


Q ss_pred             HHHHHHHHHhhCHH---HHHh--hhhHhHhHhccC------CcHHHHHHHHHHHHhhccc--------------------
Q 009632          301 AGKVTKFCRILNPE---LAIQ--HILPCVKELSSD------SSQHVRSALASVIMGMAPL--------------------  349 (530)
Q Consensus       301 ~~~l~~~~~~~~~~---~~~~--~l~~~l~~~~~d------~~~~vr~~~~~~l~~l~~~--------------------  349 (530)
                      +.+|..++..  ++   .+.+  ..+|.+..++.+      .+.+++..++..+..++..                    
T Consensus       164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            6666666643  21   1111  334444444332      2222333333222222100                    


Q ss_pred             --------c------------------------CH-HHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhch----
Q 009632          350 --------L------------------------GK-DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGI----  391 (530)
Q Consensus       350 --------~------------------------~~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~----  391 (530)
                              +                        |. ..+....++.+..+|.+. ++.+++.++.++.+++..-+.    
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                    0                        00 012234567777777654 689999999999999753221    


Q ss_pred             ---hHH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcCCc------HHHHHHHHHHH
Q 009632          392 ---DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKV------YSIRDAAANNL  460 (530)
Q Consensus       392 ---~~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~------~~Vr~~a~~~l  460 (530)
                         ..+ ....+|.+.+++.+++..+|..|+.++..++..-.. ..+....+|.+.+++...+      .++...++.++
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l  401 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV  401 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH
Confidence               112 146789999999999999999999999999874322 2234568888999998753      46888999999


Q ss_pred             HHHHHHhChh---HHhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHhhh
Q 009632          461 KRLAEEFGPE---WAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPV  505 (530)
Q Consensus       461 ~~l~~~~~~~---~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~~~  505 (530)
                      +.+...-...   ......++.+.+++.++ +..++..|.+.+.++...
T Consensus       402 ~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence            8887543221   11256789999999988 999999999999988753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.8e-13  Score=121.75  Aligned_cols=162  Identities=14%  Similarity=0.202  Sum_probs=136.4

Q ss_pred             HHHHHHHHhhc-CCCChhHHHHHHHHHHHHHhhhc-c--h-hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch
Q 009632          162 TELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVE-P--A-HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ  236 (530)
Q Consensus       162 ~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~-~--~-~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (530)
                      .+++..+...+ +|++..||..++.+++.++..++ +  . .+...++|.+.+.++|....||.++..++..++...++.
T Consensus        59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~  138 (249)
T 2qk1_A           59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL  138 (249)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc
Confidence            35566777777 79999999999999999999887 4  3 566778999999999999999999999999999988542


Q ss_pred             h---hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc-----ccc-cchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 009632          237 D---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-----PTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKF  307 (530)
Q Consensus       237 ~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  307 (530)
                      .   +.+.+++.+...+++++|.+|..++.+|+.+....+..     .+. ..++|.+.+++.|++++||.+|..+++.+
T Consensus       139 ~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i  218 (249)
T 2qk1_A          139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL  218 (249)
T ss_dssp             CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1   24568888889999999999999999999999887742     235 78999999999999999999999999999


Q ss_pred             HHhhCHHHHHhhhhHhHhHh
Q 009632          308 CRILNPELAIQHILPCVKEL  327 (530)
Q Consensus       308 ~~~~~~~~~~~~l~~~l~~~  327 (530)
                      +..+|.+.    +.|.+..+
T Consensus       219 ~~~vG~~~----~~p~l~~L  234 (249)
T 2qk1_A          219 IKIFGMNT----FVKTLEHL  234 (249)
T ss_dssp             HHHHCSGG----GHHHHHHS
T ss_pred             HHHhCHHH----HHHHHHHH
Confidence            99999754    45555444

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.4e-13  Score=122.42  Aligned_cols=193  Identities=11%  Similarity=0.185  Sum_probs=153.1

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHH-HhhhcCc----hhhhhccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhC-
Q 009632          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG-  273 (530)
Q Consensus       201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~-l~~~~~~----~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~-  273 (530)
                      +.+-+-|.+.+.+.++.-|..|+..+.. +.+..++    ..-...++..+...+ +|.+..||..++.+++.++..++ 
T Consensus        15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            3344455666778888888888888888 7654222    111234677777888 79999999999999999999988 


Q ss_pred             Ccc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH---HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632          274 PEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (530)
Q Consensus       274 ~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~  347 (530)
                      +.+   +...++|.++..++|..+.||.++..++..++...++..   ..+.+++.+...+++++|++|..++.++..++
T Consensus        95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            543   345689999999999999999999999999999874321   12456777777788999999999999999998


Q ss_pred             cccCH--H---HHH-HhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH
Q 009632          348 PLLGK--D---ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (530)
Q Consensus       348 ~~~~~--~---~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  393 (530)
                      ...+.  .   .+. +.++|.+..++.|.+..||.+|..+++.++..+|.+.
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~  226 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT  226 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence            77763  2   356 7899999999999999999999999999999999643

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.54  E-value=4.7e-13  Score=120.72  Aligned_cols=225  Identities=14%  Similarity=0.108  Sum_probs=168.2

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--H-
Q 009632          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-  353 (530)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~-  353 (530)
                      .-.+.+...+.++++++|..|+.++..+......   .......+|.+.+++++.++.+|..++..+..++.....  . 
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3467777888888888888888888655443111   122345678888888888888898888888888753211  1 


Q ss_pred             HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh
Q 009632          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  430 (530)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~  430 (530)
                      ......+|.+..+++++++.+|..++.++++++......   ......+|.+.+++.++++.+|..++.+++.++.....
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            122347899999999999999999999999987653322   22346889999999999999999999999999853221


Q ss_pred             ---hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          431 ---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       431 ---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                         .......+|.+..++.++++.||..|+.+|+.++.....   ......+++.+.+++.+++..+|..|++++++++.
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence               112345789999999999999999999999999742111   12235689999999999999999999999998764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.53  E-value=1.4e-11  Score=121.58  Aligned_cols=149  Identities=13%  Similarity=0.051  Sum_probs=114.1

Q ss_pred             HhHHHHHHHhhcC-CChHHHHHHHHhhHHhhhhhch--h----HH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh
Q 009632          357 EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI--D----LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  428 (530)
Q Consensus       357 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~--~----~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~  428 (530)
                      ...++.++.+|++ .++.+++.|+.+|.+++..-+.  .    .+ ....+|.|.+++.+++..++..++.+|+.++...
T Consensus       307 ~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~  386 (584)
T 3l6x_A          307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA  386 (584)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence            3567888888864 5789999999999999743211  1    11 1356999999999999999999999999998865


Q ss_pred             Ch-hhHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHHHHHhCh---hHHhhhhHHHHHhhccCC--ChHHHHH
Q 009632          429 GV-GFFDDKLGALCMQWLQDK--------VYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNP--HYLYRMT  494 (530)
Q Consensus       429 ~~-~~~~~~~~~~l~~~l~d~--------~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~--~~~vr~~  494 (530)
                      .. ..+....+|.+..+|.+.        ..+++..|+.+++.++..-..   .......+|.|..++.+.  +..++..
T Consensus       387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~  466 (584)
T 3l6x_A          387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRA  466 (584)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHH
T ss_pred             hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHH
Confidence            43 335577899999999875        367899999999988743111   122356799999998875  7789999


Q ss_pred             HHHHHHHHhhh
Q 009632          495 ILRAISLLAPV  505 (530)
Q Consensus       495 a~~~l~~i~~~  505 (530)
                      |..++.+++..
T Consensus       467 Aa~vL~nl~~~  477 (584)
T 3l6x_A          467 AALVLQTIWGY  477 (584)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHcC
Confidence            99999998754

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.1e-10  Score=116.91  Aligned_cols=408  Identities=11%  Similarity=0.067  Sum_probs=258.7

Q ss_pred             hhHHHhhh-cccchHHHHHHHHHHHHHHhhcC-hhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCC--ChHHHHH
Q 009632           88 LPPLETLC-TVEETCVRDKAVESLCRIGSQMR-ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA--PDILKTE  163 (530)
Q Consensus        88 ~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~--~~~~~~~  163 (530)
                      .+.+.... ..++..+..++++.+...|..-. .+.+.....+.+..+.++  ..+|..+...+..++...  ......+
T Consensus       257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~  334 (778)
T 3opb_A          257 SKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQ  334 (778)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHH
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHH
Confidence            44454444 33455666666666666554211 122344466777777765  467777777777665432  2224567


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-hhh--HHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCchh--
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHL--KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD--  237 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~--  237 (530)
                      +.+.+.+++.+++...|+.|++.|+.+...-.- +.+  .+.++..+.+++.+ ++..+.-.++..+.++....+...  
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e  414 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX  414 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence            888898888877666799999999998643211 111  13467788888875 556677788888888887654311  


Q ss_pred             --hhhccHHHHHHhcC----CCCHHHHHHHHHHHHH-HHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 009632          238 --CVAHILPVIVNFSQ----DKSWRVRYMVANQLYE-LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  310 (530)
Q Consensus       238 --~~~~~~~~l~~~~~----d~~~~vr~~~~~~l~~-l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  310 (530)
                        -..++.++...-.-    +.+..  .... .+.. -...    ......+|.+..+++.+++.+|..+++++..++..
T Consensus       415 ~~~l~~Lk~~A~~~~p~~~~~d~~~--~~~~-~v~~~~~~~----l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d  487 (778)
T 3opb_A          415 XXXXXXXXXXXXXXXPAADKVGAEK--AAKE-DILLFNEKY----ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS  487 (778)
T ss_dssp             CC------------------CCTHH--HHHH-HHHHHHHHH----TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred             hhhhhhhhhhccccCcccCcccccc--cchH-HHHHHHHHH----HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence              11222222221100    01110  0000 0111 1111    11345889999999999999999999999999865


Q ss_pred             hCHH--HHHhhhhHhHhHhccCCcHH---HHHHHHHHHHhhccccCHHHHH-----HhHHHHHHHhhcC-CCh-------
Q 009632          311 LNPE--LAIQHILPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATI-----EQLLPIFLSLLKD-EFP-------  372 (530)
Q Consensus       311 ~~~~--~~~~~l~~~l~~~~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------  372 (530)
                      -...  ...+..++.+..++.+....   +|..++.++..+.-...+....     ...+|.+..+|.. +..       
T Consensus       488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~  567 (778)
T 3opb_A          488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN  567 (778)
T ss_dssp             GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence            3222  23345567777776655433   8889999998876443332211     1567888899882 221       


Q ss_pred             ------HHHHHHHHhhHHhhhhhch------hHHHh--hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---hhhHH-
Q 009632          373 ------DVRLNIISKLDQVNQVIGI------DLLSQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD-  434 (530)
Q Consensus       373 ------~vr~~a~~~l~~l~~~~~~------~~~~~--~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~-  434 (530)
                            --+..|+.+|.+++..-+.      ..+..  ..+|.+.+++.+.+..+|.+|++++.+++..-.   .+++. 
T Consensus       568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~  647 (778)
T 3opb_A          568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNL  647 (778)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhh
Confidence                  1266788888888775421      11222  588999999999999999999999999986443   13331 


Q ss_pred             -----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHh-hhhHHHHHhhccC--CChHHHHHHHHHHHHHh
Q 009632          435 -----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAM-QHITPQVLEMINN--PHYLYRMTILRAISLLA  503 (530)
Q Consensus       435 -----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~-~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~  503 (530)
                           ..=++.+..++...+..+|.+|+.+++.+......   .... ...++.+..++.+  ++..+|..++.++.+++
T Consensus       648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~  727 (778)
T 3opb_A          648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF  727 (778)
T ss_dssp             SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence                 12378899999999999999999999988654322   1111 3577788888888  89999999999999999


Q ss_pred             h
Q 009632          504 P  504 (530)
Q Consensus       504 ~  504 (530)
                      .
T Consensus       728 ~  728 (778)
T 3opb_A          728 E  728 (778)
T ss_dssp             T
T ss_pred             H
Confidence            7

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.52  E-value=1.1e-12  Score=118.17  Aligned_cols=224  Identities=14%  Similarity=0.115  Sum_probs=152.0

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhh
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDC  238 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~  238 (530)
                      ++.+..++.++++.+|..++.+|..++...+.   .......++.+.+++.++++.+|..++.++..++..-+.   ...
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            56777888888899999999999998875432   222345788999999999999999999999998864221   112


Q ss_pred             hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-
Q 009632          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-  314 (530)
Q Consensus       239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-  314 (530)
                      ....+|.+..++++.++.+|..++.+|+.++....   ........+|.+.+++.++++++|..++.++..++...+.. 
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  163 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI  163 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            33578888888888889999999999988874211   11122357888888888888889999988888887532111 


Q ss_pred             --HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632          315 --LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       315 --~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  388 (530)
                        ......+|.+..++.++++.+|..++..+..++.....   .......++.+..+++++++.+|..|+.++.++...
T Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence              12234566677777777777777777777777642111   011223455555566655566666666666555543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.51  E-value=1.5e-11  Score=130.78  Aligned_cols=293  Identities=12%  Similarity=0.090  Sum_probs=193.4

Q ss_pred             CCchhHHHHHHHHHHHHhhhcCchhh-hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchH------HHH
Q 009632          213 DDQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV------PAY  285 (530)
Q Consensus       213 d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~------~~l  285 (530)
                      ..++.++..+++++.....-.+...+ .+.+++.+...+.+  +.+|..++++|..+...-.+......++      +.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~  281 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF  281 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence            35678889999999999886655322 24577777777776  6899999999999887533211111122      111


Q ss_pred             HHhcC-CCcHHHHHHHHHHHHHHHHh------hC----HH------HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632          286 VRLLR-DNEAEVRIAAAGKVTKFCRI------LN----PE------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (530)
Q Consensus       286 ~~~l~-d~~~~vr~~a~~~l~~~~~~------~~----~~------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~  348 (530)
                      ..+.. +.+.++.+...+.+..++..      .+    .+      .....+++.+..+..++++.+-..++..+..+..
T Consensus       282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~  361 (980)
T 3ibv_A          282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV  361 (980)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence            12222 45667766555555443322      11    00      2345678888888888888888877777766553


Q ss_pred             cc---------CH--HHHHHhHHHHHHHhhc---C----C----C-----hHHHHHHHHhhHHhhhhhchhHHHh----h
Q 009632          349 LL---------GK--DATIEQLLPIFLSLLK---D----E----F-----PDVRLNIISKLDQVNQVIGIDLLSQ----S  397 (530)
Q Consensus       349 ~~---------~~--~~~~~~l~~~l~~~l~---d----~----~-----~~vr~~a~~~l~~l~~~~~~~~~~~----~  397 (530)
                      ..         ..  ..+...+++.+..-++   |    +    +     .+.|.... .+...+..+|++...+    .
T Consensus       362 ~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~  440 (980)
T 3ibv_A          362 SLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSA  440 (980)
T ss_dssp             HHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHH
Confidence            21         11  1334455555555443   1    1    1     14677776 7778888888877666    5


Q ss_pred             HHHHHHHHhc---CCChHHHHHHHHHHHHHHhhhChhh--------HHHHHHHHHHHHhc-----CCcHHHHHHHHHHHH
Q 009632          398 LLPAIVELAE---DRHWRVRLAIIEYIPLLASQLGVGF--------FDDKLGALCMQWLQ-----DKVYSIRDAAANNLK  461 (530)
Q Consensus       398 l~~~l~~~~~---~~~~~~R~~~~~~l~~l~~~~~~~~--------~~~~~~~~l~~~l~-----d~~~~Vr~~a~~~l~  461 (530)
                      +.+.+.+.+.   +.+|+.+++++.+++.+++.+....        ..+.+++++..++.     ++.+.||..++.+++
T Consensus       441 i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~  520 (980)
T 3ibv_A          441 ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILV  520 (980)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence            6666655552   4579999999999999998765311        22357788877765     889999999999999


Q ss_pred             HHHHHhChh-HHhhhhHHHHHh--hccCCChHHHHHHHHHHHHHhhhcCh
Q 009632          462 RLAEEFGPE-WAMQHITPQVLE--MINNPHYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       462 ~l~~~~~~~-~~~~~i~~~l~~--~~~d~~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      .....+... .....+++.+..  .+.+++.+||..|+.++.++++....
T Consensus       521 rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          521 RYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            998887532 122445555656  66688999999999999999998765

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.51  E-value=3.2e-10  Score=120.71  Aligned_cols=494  Identities=10%  Similarity=0.052  Sum_probs=305.1

Q ss_pred             CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----CCCcc
Q 009632            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE   82 (530)
Q Consensus         7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~----~~~~~   82 (530)
                      ++..+..+++.+.+++...|..|-+.|.++-..  | ..+..+...+.  .+.++.+|..++..|.+.++.    +..++
T Consensus        14 dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p-~aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~   88 (1023)
T 4hat_C           14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDH   88 (1023)
T ss_dssp             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--T-TGGGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred             CHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC--c-cHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence            455677888888888888999999998876443  2 23333333332  245789999999999766552    22111


Q ss_pred             ---chhcchhHHHhhhccc-----chHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632           83 ---HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (530)
Q Consensus        83 ---~~~~l~~~l~~l~~d~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~  154 (530)
                         ....++..+....+++     ...+|.+.+.++..+++..-++. ++.+++.+..+.+... ........++..+.+
T Consensus        89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-Wp~~l~dL~~~l~~~~-~~~~~~L~iL~~L~E  166 (1023)
T 4hat_C           89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSSSV-NVCENNMIVLKLLSE  166 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHTTTCH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-chHHHHHHHHHhcCCH-HHHHHHHHHHHHHHH
Confidence               2345666665554433     46788889999999988754432 4455666655554332 233333444433221


Q ss_pred             --------CCChH-----------HHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHH-Hhhc
Q 009632          155 --------SAPDI-----------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFE-DLTQ  212 (530)
Q Consensus       155 --------~~~~~-----------~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~-~~~~  212 (530)
                              ..+..           ..+.+++.+...++ ..++.+...++++++.+...++-.. ..+.+++.+. +++.
T Consensus       167 EV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~  246 (1023)
T 4hat_C          167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT  246 (1023)
T ss_dssp             HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC
Confidence                    12211           22445555555553 4577888999999999988766532 2345777777 7775


Q ss_pred             CCchhHHHHHHHHHHHHhhh-c-Cch-hhhh-------ccHHHH-HHh-------------cCCCCHHHHHHHHHHHHHH
Q 009632          213 DDQDSVRLLAVEGCAALGKL-L-EPQ-DCVA-------HILPVI-VNF-------------SQDKSWRVRYMVANQLYEL  268 (530)
Q Consensus       213 d~~~~vr~~a~~~l~~l~~~-~-~~~-~~~~-------~~~~~l-~~~-------------~~d~~~~vr~~~~~~l~~l  268 (530)
                      +  +..|..|++++..+... . ++. .+.+       .+++.+ ..+             .++.+.......+..+..+
T Consensus       247 ~--~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~  324 (1023)
T 4hat_C          247 S--PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY  324 (1023)
T ss_dssp             S--HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred             C--HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHH
Confidence            4  67999999999999863 3 221 1111       122222 111             1233456666677777777


Q ss_pred             HHHhCCcc----cccch----HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--------HHHHhhhhHhHhHhcc---
Q 009632          269 CEAVGPEP----TRMDL----VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--------ELAIQHILPCVKELSS---  329 (530)
Q Consensus       269 ~~~~~~~~----~~~~l----~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~~~~---  329 (530)
                      ++....-.    ....+    +..++.....++.++-..++.-...+.+.+-.        ..+...+++.+..-+.   
T Consensus       325 ~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~  404 (1023)
T 4hat_C          325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE  404 (1023)
T ss_dssp             HHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCT
T ss_pred             HHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            66543211    11122    22455555666778877777766666553321        1222334444432211   


Q ss_pred             ------------------CCcHHHHH-HHHHHHHhhccccCHHHHHHhHHHHHHHhhcC--CChHHHHHHHHhhHHhhhh
Q 009632          330 ------------------DSSQHVRS-ALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       330 ------------------d~~~~vr~-~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~  388 (530)
                                        |++..... ..-..+..++...+ +...+.+.+.+...+.+  .+|..|++++-+++.+.+.
T Consensus       405 e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~  483 (1023)
T 4hat_C          405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT  483 (1023)
T ss_dssp             TCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTS
T ss_pred             ccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcC
Confidence                              11111111 11133444433333 45667777777777764  5799999999999999887


Q ss_pred             hchh---HHHhhHHHHHHHHhc-----CCChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632          389 IGID---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (530)
Q Consensus       389 ~~~~---~~~~~l~~~l~~~~~-----~~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~  459 (530)
                      ...+   .+...++|.+..+..     |+...+|..++.++|..+..+.. ..+...++..++..+.|+.+.|..+|+.+
T Consensus       484 ~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~a  563 (1023)
T 4hat_C          484 MSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT  563 (1023)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            7654   344677787877765     35567888899999988886642 22456677888888889999999999999


Q ss_pred             HHHHHHHhChhHH----------hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632          460 LKRLAEEFGPEWA----------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (530)
Q Consensus       460 l~~l~~~~~~~~~----------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~  510 (530)
                      +..+++.++....          .+.++..+.....+-+...+..+.++++.++...+.+.
T Consensus       564 l~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~  624 (1023)
T 4hat_C          564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA  624 (1023)
T ss_dssp             HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred             HHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence            9999998876542          24455555555566677788899999999999988544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.50  E-value=1.9e-10  Score=122.46  Aligned_cols=438  Identities=9%  Similarity=0.011  Sum_probs=274.5

Q ss_pred             CchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhh----cChh---hhhhhHHHHHH
Q 009632           59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVK  131 (530)
Q Consensus        59 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~----~~~~---~~~~~l~~~l~  131 (530)
                      ++++.|+.|-..|..+-+.   ++.+.....+|.   .+.++.+|..|+..|...++.    ++++   .++..++..+.
T Consensus        28 p~~~~r~~A~~~L~~~q~s---p~aw~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~  101 (1023)
T 4hat_C           28 GSGVQQKQAQEILTKFQDN---PDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMII  101 (1023)
T ss_dssp             CCHHHHHHHHHHHHHHHHC---TTGGGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHcC---ccHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHH
Confidence            3345788888888877653   344555544442   345789999999999997773    4443   34556777776


Q ss_pred             HHhcCC-----ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---h------
Q 009632          132 RLAAGE-----WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---A------  197 (530)
Q Consensus       132 ~l~~~~-----~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~------  197 (530)
                      ....++     ...++...+.+++.++...-++.++.+++-+..+++. ++......+..|..+.+-+..   +      
T Consensus       102 ~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r  180 (1023)
T 4hat_C          102 SMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAK  180 (1023)
T ss_dssp             HHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHH
T ss_pred             HhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHH
Confidence            655443     2445666777777777665555677788888887754 445566666666666554211   0      


Q ss_pred             ---------hhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCchh-hhhccHHHHH-HhcCCCCHHHHHHHHHHH
Q 009632          198 ---------HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV-NFSQDKSWRVRYMVANQL  265 (530)
Q Consensus       198 ---------~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~-~~~~d~~~~vr~~~~~~l  265 (530)
                               ...+.+++.+.+.+.+ .++.+...+++++..+..-++... ..+.+++.+. .++.  ++..|..++++|
T Consensus       181 ~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL  258 (1023)
T 4hat_C          181 ALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCL  258 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHH
Confidence                     1124456666666644 456788889999999887665432 2345777777 6665  467999999999


Q ss_pred             HHHHHH-h-CCc-ccccch-------HHHH-HHh-------------cCCCcHHHHHHHHHHHHHHHHhhCH--------
Q 009632          266 YELCEA-V-GPE-PTRMDL-------VPAY-VRL-------------LRDNEAEVRIAAAGKVTKFCRILNP--------  313 (530)
Q Consensus       266 ~~l~~~-~-~~~-~~~~~l-------~~~l-~~~-------------l~d~~~~vr~~a~~~l~~~~~~~~~--------  313 (530)
                      ..+... . ++. .+.+.+       +..+ ..+             -.+.+.+........+..+++....        
T Consensus       259 ~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~  338 (1023)
T 4hat_C          259 TEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESL  338 (1023)
T ss_dssp             HHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGG
T ss_pred             HHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcch
Confidence            998752 2 221 111111       1111 111             1233455555555555555443211        


Q ss_pred             HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC--------HHHHHHhHHHHHHHhhcCCC--------------
Q 009632          314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPIFLSLLKDEF--------------  371 (530)
Q Consensus       314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~~--------------  371 (530)
                      .......+..+......+++.+-..+++.+..+....-        ...+..++.+.+..-+.-+.              
T Consensus       339 ~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~  418 (1023)
T 4hat_C          339 RELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVR  418 (1023)
T ss_dssp             HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEE
T ss_pred             hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHH
Confidence            11112223344555566677776777777776654221        12334556666665543111              


Q ss_pred             -----h-------HHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhChh---hHH
Q 009632          372 -----P-------DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFD  434 (530)
Q Consensus       372 -----~-------~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~~---~~~  434 (530)
                           .       ..|    ++|..+....+. ...+.+++.+.+.+.+  .+|+.|++++.+++.++.....+   .+.
T Consensus       419 e~~~d~d~~~~f~~~R----d~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l  493 (1023)
T 4hat_C          419 EFVKESDTIQLYKSER----EVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV  493 (1023)
T ss_dssp             CSSCCGGGHHHHHHHH----HHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred             HhccchHHHHHHHHHH----HHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH
Confidence                 0       123    455555554444 4445677777666554  58999999999999999887654   355


Q ss_pred             HHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhChhH-HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632          435 DKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       435 ~~~~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      ..++|.+..+..     |+...||..++.++|++.+.+..++ ....++..+...+.++++.|..+|++++.++++.++.
T Consensus       494 ~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          494 VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            678888888876     5667789999999999988874332 2356777777778889999999999999999998775


Q ss_pred             HH
Q 009632          509 EI  510 (530)
Q Consensus       509 ~~  510 (530)
                      ..
T Consensus       574 ~l  575 (1023)
T 4hat_C          574 HF  575 (1023)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.49  E-value=6.3e-13  Score=119.83  Aligned_cols=222  Identities=13%  Similarity=0.086  Sum_probs=152.3

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhh
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDC  238 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~  238 (530)
                      .+.+..++.++++++|..++.+|..+...-.+   .......+|.+.+++.++++.+|..|+.++..++...+.   ...
T Consensus        14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (252)
T 4db8_A           14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (252)
T ss_dssp             HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45666777788899999999999776654211   223345789999999999999999999999998864322   112


Q ss_pred             hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-
Q 009632          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-  314 (530)
Q Consensus       239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-  314 (530)
                      ....+|.+..+++++++.+|..++.+|++++.....   .......+|.+.+++.++++.+|..++.++..++...... 
T Consensus        94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  173 (252)
T 4db8_A           94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI  173 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence            334788888888888899999999998888643211   1123357888888888888888988888888887532111 


Q ss_pred             --HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632          315 --LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (530)
Q Consensus       315 --~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (530)
                        ......+|.+.+++.++++.+|..++..+..++..-..   .......+|.+..++.++++.+|..|+.++.+++
T Consensus       174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence              12245677777777777778888888777777642211   1112245666666666666677777666666554

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.48  E-value=1.9e-11  Score=119.88  Aligned_cols=178  Identities=11%  Similarity=0.019  Sum_probs=109.9

Q ss_pred             hhHHHhhhcccchHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHH--
Q 009632           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT--  162 (530)
Q Consensus        88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~--  162 (530)
                      +|.+..++.++++.++..|+.+|..++..-++   .......+|.+..++.+++..++..++..+..+... +++.+.  
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i   82 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLET   82 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            45555666666777888888888887754332   122334567777777777777777788877777764 233332  


Q ss_pred             ---HHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhc--------CC--------chhHHH
Q 009632          163 ---ELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQ--------DD--------QDSVRL  220 (530)
Q Consensus       163 ---~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~--------d~--------~~~vr~  220 (530)
                         ..+|.+.+++. +.++++++.++.+|.+++.. +.  ..+....+|.+.+++.        ++        +..+..
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence               34678888887 77888899998888888876 32  2222377888888882        22        344556


Q ss_pred             HHHHHHHHHhhhcCc--hhhh--hccHHHHHHhcCC------CCHHHHHHHHHHHHHH
Q 009632          221 LAVEGCAALGKLLEP--QDCV--AHILPVIVNFSQD------KSWRVRYMVANQLYEL  268 (530)
Q Consensus       221 ~a~~~l~~l~~~~~~--~~~~--~~~~~~l~~~~~d------~~~~vr~~~~~~l~~l  268 (530)
                      .|..+|.+++.. ++  ..+.  +.++|.+..++.+      .+.+++..++..+..+
T Consensus       162 ~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL  218 (457)
T 1xm9_A          162 NATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL  218 (457)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence            888888888865 22  1122  1466666665542      2233444444445444

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.47  E-value=7.8e-11  Score=125.30  Aligned_cols=492  Identities=10%  Similarity=0.045  Sum_probs=299.2

Q ss_pred             CcHHHHHHHhcCh--hHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCc----c
Q 009632            9 YPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV----E   82 (530)
Q Consensus         9 ~~~~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~----~   82 (530)
                      ..+...++...++  |+..|..|.+.|.++-..  | ..+......+......++++|-.++..|.+.++.+..+    +
T Consensus         6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p-~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~   82 (980)
T 3ibv_A            6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--S-TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLE   82 (980)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--T-THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--h-hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHH
Confidence            3445555433344  799999999999887543  2 34444444443322237899999999998666644433    2


Q ss_pred             ---chhcchhHHHhhh-cccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCcc-chhHHHHhHhh----hhc
Q 009632           83 ---HAHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWF-TARVSACGLFH----IAY  153 (530)
Q Consensus        83 ---~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~-~~r~~~~~~l~----~l~  153 (530)
                         ....++..+.... .+....+|.....++..+++..-++. ++.+++.+..+....+. ..-....+.+.    ++.
T Consensus        83 ~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~-Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~  161 (980)
T 3ibv_A           83 LQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN-WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIA  161 (980)
T ss_dssp             HHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc-CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHH
Confidence               1344555555422 13467899999999999998754432 33344444444333222 11122233333    222


Q ss_pred             CC---CChH---H------------HHHHHHHHHhh----cCCCChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHHh
Q 009632          154 PS---APDI---L------------KTELRSIYTQL----CQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDL  210 (530)
Q Consensus       154 ~~---~~~~---~------------~~~l~~~l~~l----~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~  210 (530)
                      ..   .++.   .            .+.+.+.+..+    ....++.++..++++++.+...++... ..+.+++.+.+.
T Consensus       162 ~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~  241 (980)
T 3ibv_A          162 DSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSF  241 (980)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHH
T ss_pred             hcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHH
Confidence            11   1110   0            11123333333    234678899999999999998766543 235688888888


Q ss_pred             hcCCchhHHHHHHHHHHHHhhhcCchhhhhccH------HHHHHhcC-CCCHHHHHHHHHHHHHHHHHh-----CCc---
Q 009632          211 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL------PVIVNFSQ-DKSWRVRYMVANQLYELCEAV-----GPE---  275 (530)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~------~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~-----~~~---  275 (530)
                      +.+  +.+|..|++++..+...-.+......++      +.+..+.. +.+..++...++.+..++..+     .+.   
T Consensus       242 L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~  319 (980)
T 3ibv_A          242 LQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELS  319 (980)
T ss_dssp             TTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--C
T ss_pred             cCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence            887  6899999999999987644311111122      22222222 456667776666665544331     110   


Q ss_pred             --------ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---H-----H---HHHhhhhHhHhHhcc---C---
Q 009632          276 --------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---P-----E---LAIQHILPCVKELSS---D---  330 (530)
Q Consensus       276 --------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~-----~---~~~~~l~~~l~~~~~---d---  330 (530)
                              .....+++.++.++.+++++|-..++..+..+.....   .     +   .+...+++.+..-+.   |   
T Consensus       320 ~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~  399 (980)
T 3ibv_A          320 PELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEW  399 (980)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCC
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcccc
Confidence                    1234688999999999999998877777776665321   1     1   223334444432221   1   


Q ss_pred             -C----c-----HHHHHHHHHHHHhhccccCHHHHHH----hHHHHHHHhhc---CCChHHHHHHHHhhHHhhhhhchh-
Q 009632          331 -S----S-----QHVRSALASVIMGMAPLLGKDATIE----QLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIGID-  392 (530)
Q Consensus       331 -~----~-----~~vr~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~-  392 (530)
                       .    +     ...|..+. .+-..+..+|++.+..    .+.+.+.+.+.   +.+|..+++++-+++.+++.+... 
T Consensus       400 ~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~  478 (980)
T 3ibv_A          400 DDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPD  478 (980)
T ss_dssp             CCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGG
T ss_pred             ccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccc
Confidence             1    1     13555555 5555566667777666    66666666663   356899999999999888765431 


Q ss_pred             -------HHHhhHHHHHHHHhc-----CCChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHH--HhcCCcHHHHHHHH
Q 009632          393 -------LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQ--WLQDKVYSIRDAAA  457 (530)
Q Consensus       393 -------~~~~~l~~~l~~~~~-----~~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~--~l~d~~~~Vr~~a~  457 (530)
                             ...+.+++.+..+++     ++++.+|..++++++..++.+.. ..+...+++.+..  .+.+++..||.+|+
T Consensus       479 ~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~  558 (980)
T 3ibv_A          479 AFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAW  558 (980)
T ss_dssp             GTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHH
T ss_pred             cccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHH
Confidence                   122356676766654     77899999999999999887753 2344567777777  77788999999999


Q ss_pred             HHHHHHHHHhChhHH--hhhhHHHHHhhccC---C------------------ChHHHHHHHHHHHHHhhhcC
Q 009632          458 NNLKRLAEEFGPEWA--MQHITPQVLEMINN---P------------------HYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       458 ~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d---~------------------~~~vr~~a~~~l~~i~~~~~  507 (530)
                      .++..+++.++....  .+.++..+..++.-   +                  ..+-+....+++|.++...+
T Consensus       559 ~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~  631 (980)
T 3ibv_A          559 YLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN  631 (980)
T ss_dssp             HHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence            999999998875422  13455555554431   1                  12357789999999997764

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.47  E-value=2.2e-10  Score=114.85  Aligned_cols=460  Identities=10%  Similarity=0.029  Sum_probs=272.6

Q ss_pred             CCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccc----hHHHHHHHHHHHHHHhhcCh---h-hhhhhHHHH
Q 009632           58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE----TCVRDKAVESLCRIGSQMRE---S-DLVDWYIPL  129 (530)
Q Consensus        58 d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~----~~vR~~a~~~l~~l~~~~~~---~-~~~~~l~~~  129 (530)
                      .+.+++|..+-..+.++.+... +.+...+..++..++-+.+    ..--..++.++..+....+.   . ...+.+.+.
T Consensus       181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~  259 (778)
T 3opb_A          181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL  259 (778)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred             cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence            4566777776666655544322 3455566666665552211    11223344555555444332   1 112234556


Q ss_pred             HHHHhcC-CccchhHHHHhHhhhhcCCCChH--HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHH
Q 009632          130 VKRLAAG-EWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMS  205 (530)
Q Consensus       130 l~~l~~~-~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~  205 (530)
                      +.+.... ++......+..++...+..-...  ..+...+.+.+++++  ..+|..|+-.|..+...-+. ..-...+.+
T Consensus       260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~  337 (778)
T 3opb_A          260 FKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSE  337 (778)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence            6555533 34445566677776655432221  446667777787765  57888888888887654332 233456888


Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhh--hhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCcc----c
Q 009632          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDC--VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP----T  277 (530)
Q Consensus       206 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~----~  277 (530)
                      .+.+.+.+++...|..|++.|.++...-.- +.+  ...+++.+..++++ .+..+-..++..|+++........    .
T Consensus       338 ~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~  417 (778)
T 3opb_A          338 IFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX  417 (778)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence            999999887666699999999998754221 111  12356666666664 445577777788888776543211    1


Q ss_pred             ccchHHHHHHhcCC--CcHHHHHHHHHHHHH-HHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--
Q 009632          278 RMDLVPAYVRLLRD--NEAEVRIAAAGKVTK-FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--  352 (530)
Q Consensus       278 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~-~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--  352 (530)
                      ..++.++.....-+  +.+...... ..... -...+    ....++|.+..++.+.++.+|..+++.+..++..-..  
T Consensus       418 l~~Lk~~A~~~~p~~~~~d~~~~~~-~~v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~  492 (778)
T 3opb_A          418 XXXXXXXXXXXXPAADKVGAEKAAK-EDILLFNEKYI----LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP  492 (778)
T ss_dssp             -----------------CCTHHHHH-HHHHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH
T ss_pred             hhhhhhhccccCcccCcccccccch-HHHHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            22222222111100  000100000 01111 11111    1235688888888889999999999999999754321  


Q ss_pred             HHHHHhHHHHHHHhhcCCChH---HHHHHHHhhHHhhhhhchhHHH-----hhHHHHHHHHhcC-CCh------------
Q 009632          353 DATIEQLLPIFLSLLKDEFPD---VRLNIISKLDQVNQVIGIDLLS-----QSLLPAIVELAED-RHW------------  411 (530)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~l~~~~~~~~~~-----~~l~~~l~~~~~~-~~~------------  411 (530)
                      ....+..++.++.++.+....   +|..|+.+|.++.....+....     ...+|.|.+++.. +..            
T Consensus       493 ~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~  572 (778)
T 3opb_A          493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK  572 (778)
T ss_dssp             HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred             HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccccc
Confidence            223456788899999877554   8999999999987443322211     2578888888872 221            


Q ss_pred             -HHHHHHHHHHHHHHhhhCh------h-hHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHh---hh-
Q 009632          412 -RVRLAIIEYIPLLASQLGV------G-FFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAM---QH-  475 (530)
Q Consensus       412 -~~R~~~~~~l~~l~~~~~~------~-~~~-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~---~~-  475 (530)
                       ..+..|+.+|.+++..-+.      . .+. ...+|.+..++.+.+..||.+|+++++.++..-..   .+..   .. 
T Consensus       573 ~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~  652 (778)
T 3opb_A          573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQS  652 (778)
T ss_dssp             HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchh
Confidence             2388999999999986431      1 233 35889999999999999999999999999863321   1111   01 


Q ss_pred             --hHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh---HHHH-hhHHHHHHhhccC
Q 009632          476 --ITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITC-SRLLPVVINASKD  525 (530)
Q Consensus       476 --i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~---~~~~-~~~~p~l~~~l~D  525 (530)
                        =++.+..+++..+.++|.+|..+++.+....+.   ..+. +..++.+...+.|
T Consensus       653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~  708 (778)
T 3opb_A          653 LRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD  708 (778)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc
Confidence              166788889999999999999999998643332   2222 2345555555544

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.46  E-value=3.3e-11  Score=116.15  Aligned_cols=247  Identities=13%  Similarity=0.041  Sum_probs=174.9

Q ss_pred             HHHHHHHHHHHHh--CCcccccchHHHHHHhcC-----------CCcHHHHHHHHHHHHHHHHhhCHH--HH--HhhhhH
Q 009632          260 MVANQLYELCEAV--GPEPTRMDLVPAYVRLLR-----------DNEAEVRIAAAGKVTKFCRILNPE--LA--IQHILP  322 (530)
Q Consensus       260 ~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~~~~~~~~~--~~--~~~l~~  322 (530)
                      .++++|++++..-  .........++.+..++.           +.++.++..|+.+|..++..-...  .+  ....+|
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            6666777664210  001112346677777763           134789999999999998643211  22  234589


Q ss_pred             hHhHhccCCcHHHHHHHHHHHHhhccccCHH---HH-HHhHHHHHHHh-hcCCChHHHHHHHHhhHHhhhhh-c-hhHH-
Q 009632          323 CVKELSSDSSQHVRSALASVIMGMAPLLGKD---AT-IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL-  394 (530)
Q Consensus       323 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~-~~~~-  394 (530)
                      .+..++.+.+..++..++.++..++..-+.+   .+ ....+|.+..+ +...+..++..++.++.++.... + ...+ 
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            9999999999999999999999987532221   12 23567888886 45678899999999998887622 1 1122 


Q ss_pred             -HhhHHHHHHHHhcCCCh----HHHHHHHHHHHHHHhh--hChhh----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632          395 -SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQ--LGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (530)
Q Consensus       395 -~~~l~~~l~~~~~~~~~----~~R~~~~~~l~~l~~~--~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  463 (530)
                       ....+|.|..++.+.+.    .++..++.++..++..  .+.+.    .....+|.+..++.+....+++.|+.+|+.+
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL  406 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             24678999998876543    5899999999998863  12222    2234689999999999999999999999999


Q ss_pred             HHHhChh----HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632          464 AEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       464 ~~~~~~~----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      +.. .++    ......+|.|.+++..++..+|..|+.++.+++..-+
T Consensus       407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            732 111    2235679999999999999999999999999987643

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.46  E-value=1.3e-10  Score=114.59  Aligned_cols=344  Identities=13%  Similarity=0.089  Sum_probs=234.2

Q ss_pred             chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh---hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH
Q 009632           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (530)
Q Consensus        83 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~  159 (530)
                      +...-+|.|..++.+.++.++..|+.+|..++..-.+.   ....-.+|.+..++.+++..++..|+..+..++..-+++
T Consensus        45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            44556777777777788899999999999888643321   223336788888888888899999999999988753333


Q ss_pred             HH-----HHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhc------------------CC
Q 009632          160 LK-----TELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQ------------------DD  214 (530)
Q Consensus       160 ~~-----~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~------------------d~  214 (530)
                      .+     ...+|.|..++.+ .+..+++.++.+|..++..-.. ..+....+|.+.+++.                  .+
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~  204 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE  204 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence            22     3457788888875 5788999999999888763221 2223445677777551                  12


Q ss_pred             chhHHHHHHHHHHHHhhhcCc--hhhh--hccHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHhC-----------
Q 009632          215 QDSVRLLAVEGCAALGKLLEP--QDCV--AHILPVIVNFSQ------DKSWRVRYMVANQLYELCEAVG-----------  273 (530)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~--~~~~--~~~~~~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~-----------  273 (530)
                      +..|+..|..+|.+++..-..  ..+.  ..+++.+..+++      +.+......++.+|.+++....           
T Consensus       205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            468999999999998864321  1111  224444444432      3445566777777777664321           


Q ss_pred             ------------Ccc-----cccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHH------HH-HhhhhHhHhHhc
Q 009632          274 ------------PEP-----TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE------LA-IQHILPCVKELS  328 (530)
Q Consensus       274 ------------~~~-----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~------~~-~~~l~~~l~~~~  328 (530)
                                  ...     +....++.++.++. ..++.++++|+.+|..++..-+..      .+ ....+|.+.+++
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL  364 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL  364 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence                        000     11235677888885 456899999999999997532211      11 145689999999


Q ss_pred             cCCcHHHHHHHHHHHHhhccccC-HHHHHHhHHHHHHHhhcCC--------ChHHHHHHHHhhHHhhhhhch---hHHHh
Q 009632          329 SDSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLLKDE--------FPDVRLNIISKLDQVNQVIGI---DLLSQ  396 (530)
Q Consensus       329 ~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~--------~~~vr~~a~~~l~~l~~~~~~---~~~~~  396 (530)
                      .+.+..++..++.++..++.... ...+....+|.+..+|.+.        ..+++..++.++.+++..-..   .....
T Consensus       365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~  444 (584)
T 3l6x_A          365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET  444 (584)
T ss_dssp             GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence            99999999999999999876543 2445678899999999876        357888888888887633111   11234


Q ss_pred             hHHHHHHHHhcCC--ChHHHHHHHHHHHHHHh
Q 009632          397 SLLPAIVELAEDR--HWRVRLAIIEYIPLLAS  426 (530)
Q Consensus       397 ~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~  426 (530)
                      ..+|.|..++.+.  ...++..|..++..+..
T Consensus       445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            6788899988875  77899999999998875

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.46  E-value=2.4e-14  Score=125.10  Aligned_cols=186  Identities=22%  Similarity=0.209  Sum_probs=123.7

Q ss_pred             hhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHh
Q 009632          170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF  249 (530)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  249 (530)
                      .++.|+++.||..++..+       +.        ..+..++.|+++.||..++..+       +.        +.+..+
T Consensus        57 ~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~l  106 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSAL  106 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGT
T ss_pred             HHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHHH
Confidence            566788888888887754       11        2355677888888888877653       21        346667


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632          250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (530)
Q Consensus       250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~  329 (530)
                      ++|++|.||..++..+       ..        +.+..+++|+++.||..++..+       +        .+.+..+.+
T Consensus       107 l~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~--------~~~l~~l~~  156 (244)
T 1lrv_A          107 MFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRFMR  156 (244)
T ss_dssp             TTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGTTT
T ss_pred             HcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------C--------HHHHHHHHc
Confidence            8888888888877643       11        2345667888888888887632       1        123456677


Q ss_pred             CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC
Q 009632          330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  409 (530)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~  409 (530)
                      |++|.||..++..+       +.        +.+..+++|+++.||..++..+.       .        +.+..++.|+
T Consensus       157 D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~-------~--------~~L~~Ll~D~  206 (244)
T 1lrv_A          157 DEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHDP  206 (244)
T ss_dssp             CSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGCS
T ss_pred             CCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC-------H--------HHHHHHHcCC
Confidence            88888888877751       11        34456778888888888877641       1        2345557888


Q ss_pred             ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 009632          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (530)
Q Consensus       410 ~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~  461 (530)
                      +|.+|..++..++               .+.+..+ .|+++.||..+.+.||
T Consensus       207 d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          207 DWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            8888888877754               1345455 8888888888876654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.40  E-value=2.2e-13  Score=119.01  Aligned_cols=188  Identities=23%  Similarity=0.188  Sum_probs=104.8

Q ss_pred             HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh
Q 009632           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (530)
Q Consensus        91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~  170 (530)
                      +..+++|+++.||..++..+       +.        ..+..+.+|+++.||..+...+.       .       +.+..
T Consensus        55 ~~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~-------~-------~~L~~  105 (244)
T 1lrv_A           55 AVQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSA  105 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGG
T ss_pred             HHHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCC-------H-------HHHHH
Confidence            44556788888888877643       21        12445556666777776655321       1       23456


Q ss_pred             hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhc
Q 009632          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS  250 (530)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~  250 (530)
                      +++|+++.||..++..+       +.        +.+..+++|+++.||..++..+       ++        +.+..+.
T Consensus       106 ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~  155 (244)
T 1lrv_A          106 LMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  155 (244)
T ss_dssp             TTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence            66677777777766632       11        1234456677777777666521       11        2344566


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccC
Q 009632          251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD  330 (530)
Q Consensus       251 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d  330 (530)
                      +|++|.||..++..+       +        -+.+..+++|++++||.+++..+       +        .+.+..+++|
T Consensus       156 ~D~d~~VR~~aa~~l-------~--------~~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D  205 (244)
T 1lrv_A          156 RDEDRQVRKLVAKRL-------P--------EESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHD  205 (244)
T ss_dssp             TCSCHHHHHHHHHHS-------C--------GGGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGC
T ss_pred             cCCCHHHHHHHHHcC-------C--------HHHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcC
Confidence            667777777665531       1        12344566677777776666542       1        1345555667


Q ss_pred             CcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhH
Q 009632          331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (530)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  383 (530)
                      ++|+||..+++.++               .+.+..+ +|+++.||..+...|+
T Consensus       206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            77777766666532               1333344 6666677766665553

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.40  E-value=3.9e-10  Score=115.46  Aligned_cols=300  Identities=13%  Similarity=0.067  Sum_probs=151.2

Q ss_pred             ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCc--------cchhHHHHhHhhhhcCCCChHHHHHHHHHH
Q 009632           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEW--------FTARVSACGLFHIAYPSAPDILKTELRSIY  168 (530)
Q Consensus        97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~--------~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l  168 (530)
                      .+++.+|..|+.+++-+......+     ....+...+.+++        +.+|..++..+|.+.-..+.   +++.+.+
T Consensus       406 s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~---eev~e~L  477 (963)
T 4ady_A          406 ASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN---IEVYEAL  477 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC---HHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC---HHHHHHH
Confidence            345667777777777776655432     1222222222222        45666666666665543332   2233333


Q ss_pred             HhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH
Q 009632          169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN  248 (530)
Q Consensus       169 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  248 (530)
                      ...+.|.+..+|..++.+||.+.-.-+++.....++..+.   .+.++.+|..++.+|+-+.-  |.+..   +-..+..
T Consensus       478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~--g~~e~---~~~li~~  549 (963)
T 4ady_A          478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALINY--GRQEL---ADDLITK  549 (963)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTT--TCGGG---GHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhC--CChHH---HHHHHHH
Confidence            3444445556666676666665443344333343444332   34455667666666665532  22211   2222333


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhc
Q 009632          249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS  328 (530)
Q Consensus       249 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~  328 (530)
                      +..+.+|.+|..++.+++-..-..|.....+.+   +-.+..|.+++||.+|+-+|+.+.-  |..   +.+...+..+.
T Consensus       550 L~~~~dp~vRygaa~alglAyaGTGn~~aIq~L---L~~~~~d~~d~VRraAViaLGlI~~--g~~---e~v~rlv~~L~  621 (963)
T 4ady_A          550 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRL---LHVAVSDSNDDVRRAAVIALGFVLL--RDY---TTVPRIVQLLS  621 (963)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHH---HHHHHHCSCHHHHHHHHHHHHHHTS--SSC---SSHHHHTTTGG
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHH---HHHhccCCcHHHHHHHHHHHHhhcc--CCH---HHHHHHHHHHH
Confidence            444566777777666655443333332222222   2223346666777777777765532  111   11122222344


Q ss_pred             cCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHh
Q 009632          329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA  406 (530)
Q Consensus       329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~  406 (530)
                      ++.++.+|.+++.+++.++..-+.    ..++..+..+..|.+..||..|+.+|+.+...-....  -...++..+.+..
T Consensus       622 ~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~  697 (963)
T 4ady_A          622 KSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVI  697 (963)
T ss_dssp             GCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH
Confidence            566677777777777776644442    2344455566677777777777777776653322110  1133444455555


Q ss_pred             cC--CChHHHHHHHHHHHHH
Q 009632          407 ED--RHWRVRLAIIEYIPLL  424 (530)
Q Consensus       407 ~~--~~~~~R~~~~~~l~~l  424 (530)
                      .+  .+...|..+.-+.|.+
T Consensus       698 ~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          698 TNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             HCSSSCHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHH
Confidence            44  3455666665555554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.39  E-value=1.8e-10  Score=117.87  Aligned_cols=308  Identities=13%  Similarity=0.097  Sum_probs=202.3

Q ss_pred             HHHHHhhcC---CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCc--------hhHHHHHHHHHHHHhhhc
Q 009632          165 RSIYTQLCQ---DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ--------DSVRLLAVEGCAALGKLL  233 (530)
Q Consensus       165 ~~~l~~l~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~--------~~vr~~a~~~l~~l~~~~  233 (530)
                      +..+...+.   +.++.+|..|+.++|.+....+.+     .+..|...+.+++        +.+|..|+-.|+.+.-..
T Consensus       394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS  468 (963)
T 4ady_A          394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS  468 (963)
T ss_dssp             HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence            444444444   567889999999999987765542     3455555554443        678888888888866544


Q ss_pred             CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 009632          234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (530)
Q Consensus       234 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  313 (530)
                      +.+.    +.+.+...+.|++..+|..++-++|.+.-..|.....+.++..+.   .+.+..+|..++-+|+.+.  +|.
T Consensus       469 ~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~  539 (963)
T 4ady_A          469 ANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGR  539 (963)
T ss_dssp             CCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTC
T ss_pred             CCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCC
Confidence            4333    556666666666677888888888877655554433344444433   4556789999888888763  344


Q ss_pred             HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH
Q 009632          314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (530)
Q Consensus       314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  393 (530)
                      ....+.+   +..+..+.+|.+|.+++-+++.-....|.....+.+   +..+..|.+..||..|+.+++-+.-  |.+ 
T Consensus       540 ~e~~~~l---i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~L---L~~~~~d~~d~VRraAViaLGlI~~--g~~-  610 (963)
T 4ady_A          540 QELADDL---ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRL---LHVAVSDSNDDVRRAAVIALGFVLL--RDY-  610 (963)
T ss_dssp             GGGGHHH---HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHH---HHHHHHCSCHHHHHHHHHHHHHHTS--SSC-
T ss_pred             hHHHHHH---HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHH---HHHhccCCcHHHHHHHHHHHHhhcc--CCH-
Confidence            3222222   233345788999999888887665555654444434   3344568888999999999887642  221 


Q ss_pred             HHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH-
Q 009632          394 LSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-  471 (530)
Q Consensus       394 ~~~~l~~~l~~-~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-  471 (530)
                         ...+.+.. +..+.++.+|..+..+++.++..-+.    ..++..+..+.+|++..||..|+.+||.+.....+.. 
T Consensus       611 ---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~  683 (963)
T 4ady_A          611 ---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN  683 (963)
T ss_dssp             ---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred             ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc
Confidence               23444444 45677899999999999988644332    3466778888899999999999999998875432221 


Q ss_pred             -HhhhhHHHHHhhccC--CChHHHHHHHHHHHHH
Q 009632          472 -AMQHITPQVLEMINN--PHYLYRMTILRAISLL  502 (530)
Q Consensus       472 -~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i  502 (530)
                       ....++..+.+...|  .+...|-.+.-+.|-+
T Consensus       684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence             124455666666655  4566777777777755

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.36  E-value=4.5e-10  Score=108.27  Aligned_cols=305  Identities=13%  Similarity=0.063  Sum_probs=204.0

Q ss_pred             HHHHHHHHhhcCCC------------ChhHHHHHHHHHHHHHhhhcchhh---HHHHH----------HHHHHhhcCCc-
Q 009632          162 TELRSIYTQLCQDD------------MPMVRRSAASNLGKFAATVEPAHL---KTDIM----------SIFEDLTQDDQ-  215 (530)
Q Consensus       162 ~~l~~~l~~l~~d~------------~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~----------~~l~~~~~d~~-  215 (530)
                      ..++|.|.++++..            ++.+|..|+.+|.+++..-++...   ...++          +.+.+++.... 
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            33556666666542            368999999999999876554211   11122          33334443221 


Q ss_pred             -h-----hHHH-------HHHHHHHHHhhhcCc--hhhhhccHHHHHHhcC----------C-CCHHHHHHHHHHHHHHH
Q 009632          216 -D-----SVRL-------LAVEGCAALGKLLEP--QDCVAHILPVIVNFSQ----------D-KSWRVRYMVANQLYELC  269 (530)
Q Consensus       216 -~-----~vr~-------~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~----------d-~~~~vr~~~~~~l~~l~  269 (530)
                       +     .++.       .|+.+|..++..-..  .......++.+..++.          + .+..++..++.+|.+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence             1     1555       788888888643110  1112346666766662          1 34678999999999998


Q ss_pred             HHhC--Cccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHhhhhHhHhHh-ccCCcHHHHHHHH
Q 009632          270 EAVG--PEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL-SSDSSQHVRSALA  340 (530)
Q Consensus       270 ~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~-~~d~~~~vr~~~~  340 (530)
                      ..-.  +...  ....+|.+++++..++++++..|+.+|..++..-+.+    ......+|.+.++ ..+.+..++..++
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~  308 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL  308 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence            4311  0111  2356899999999999999999999999987531221    1223457777775 5667889999988


Q ss_pred             HHHHhhccccC--HHHH--HHhHHHHHHHhhcCCCh----HHHHHHHHhhHHhhhhh--chh---H-HHhhHHHHHHHHh
Q 009632          341 SVIMGMAPLLG--KDAT--IEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVI--GID---L-LSQSLLPAIVELA  406 (530)
Q Consensus       341 ~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~---~-~~~~l~~~l~~~~  406 (530)
                      .++..++....  ...+  ....+|.+..+|.+...    .++..++.+|.++...+  +++   . .....+|.|..++
T Consensus       309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL  388 (458)
T 3nmz_A          309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL  388 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred             HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence            88888876331  1222  24578999999987654    48999999998887521  111   1 1235789999999


Q ss_pred             cCCChHHHHHHHHHHHHHHhhhC--hh-hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632          407 EDRHWRVRLAIIEYIPLLASQLG--VG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~~l~~~~~--~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  466 (530)
                      .+.+..++..|+.++..++..-.  .. ......+|.+..++..++..+|+.|+.+|..++..
T Consensus       389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            99999999999999999984211  11 12345789999999999999999999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.34  E-value=1.1e-09  Score=113.74  Aligned_cols=259  Identities=12%  Similarity=0.187  Sum_probs=202.9

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD  237 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~  237 (530)
                      ..+...+.+.+.|....  ..|+.++..++...+.    +.+.-.++|.+.....|....||.+|..+...+...+++..
T Consensus        53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a  130 (986)
T 2iw3_A           53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA  130 (986)
T ss_dssp             HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred             hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence            35777777777776444  8999999999976654    22223356888888899999999999999999999999876


Q ss_pred             hhhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 009632          238 CVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE  314 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  314 (530)
                      . ..++|.+...+.+. .|+.+..++..++.++.......  ....++|.+...+.|..++|+.+|.+++..++..+++.
T Consensus       131 ~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~  209 (986)
T 2iw3_A          131 I-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK  209 (986)
T ss_dssp             H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred             H-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc
Confidence            5 77888888877654 69999999999999998763322  35689999999999999999999999999999999988


Q ss_pred             HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc----CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc
Q 009632          315 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  390 (530)
Q Consensus       315 ~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  390 (530)
                      ++ +.++|.+.+.+.+++.     +-+++..++..-    -.......+.|++...|+++...++.+++-.+.++++...
T Consensus       210 d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~  283 (986)
T 2iw3_A          210 DI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE  283 (986)
T ss_dssp             TT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred             ch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence            76 6678888888888754     334444443211    1245577899999999999999999999999999998876


Q ss_pred             hh----HHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhC
Q 009632          391 ID----LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLG  429 (530)
Q Consensus       391 ~~----~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~  429 (530)
                      ..    .+.+.++|.+.+.... .++.+|..+-.++..+-...+
T Consensus       284 ~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~  327 (986)
T 2iw3_A          284 DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN  327 (986)
T ss_dssp             CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence            43    3456777777765544 579999999888888866533

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.33  E-value=1e-10  Score=101.99  Aligned_cols=185  Identities=14%  Similarity=0.065  Sum_probs=127.0

Q ss_pred             hhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hH
Q 009632          320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL  393 (530)
Q Consensus       320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~  393 (530)
                      ..|.+..+++++++.+|..++..+..++..-..   .......+|.+..+|+++++.+|..++.++++++..-..   ..
T Consensus        13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (210)
T 4db6_A           13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (210)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            344555555555566666555555555432111   112235677788888888888888888888887632111   11


Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh---hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-
Q 009632          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-  469 (530)
Q Consensus       394 ~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-  469 (530)
                      .....+|.+..++++++..+|..++.+++.++.....   .......+|.+.+++.+++..+|..|+.+|+.++..... 
T Consensus        93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  172 (210)
T 4db6_A           93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ  172 (210)
T ss_dssp             HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence            2245788888888888899999999999988752211   112345788999999999999999999999998764211 


Q ss_pred             --hHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          470 --EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       470 --~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                        .......++.+.+++.+++..+|..|+.++.+++.
T Consensus       173 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence              11235678999999999999999999999998864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.32  E-value=7.4e-11  Score=102.90  Aligned_cols=186  Identities=12%  Similarity=0.080  Sum_probs=132.1

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---  235 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---  235 (530)
                      ....+.+..+++++++.+|..++.+|..++..-+.   .......+|.+.+++.++++.+|..|+.+++.++..-+.   
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            34567788888999999999999999999853222   222345789999999999999999999999998754322   


Q ss_pred             hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (530)
Q Consensus       236 ~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  312 (530)
                      .......+|.+..++++.++.+|..++.+|++++.....   .......+|.+.+++.++++++|..++.+|..++....
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            122345889999999999999999999999998742111   11234578889999998889999999999998876321


Q ss_pred             HH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632          313 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (530)
Q Consensus       313 ~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~  347 (530)
                      ..   ......++.+.+++.+.+..+|..++.++..++
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            11   112234555666666666666666666665554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.31  E-value=7.9e-09  Score=112.94  Aligned_cols=499  Identities=10%  Similarity=0.033  Sum_probs=280.7

Q ss_pred             CCCCC--CCcCcHHHHHHHhcCh--hHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccc
Q 009632            1 MAMVD--EPLYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIP   76 (530)
Q Consensus         1 ~~~~~--~~~~~~~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~   76 (530)
                      |.|+|  +.+..+..+++.+.++  +...|..|.+.|.++-..  |+ .+..+.-.+. ..+.++.+|..++..|.+.++
T Consensus         1 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~   76 (1204)
T 3a6p_A            1 MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVK   76 (1204)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHH
Confidence            45433  3455566777777766  777899999988876432  11 1112222222 234578999999999987654


Q ss_pred             c----CCCcc---chhcchhHHHhhhc---ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHH
Q 009632           77 Y----VGGVE---HAHVLLPPLETLCT---VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSAC  146 (530)
Q Consensus        77 ~----~~~~~---~~~~l~~~l~~l~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~  146 (530)
                      .    +..++   ....++..+.....   +.+..||.....++..+++.--+ ..++.+++.+..+.+. +...+..+.
T Consensus        77 ~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L  154 (1204)
T 3a6p_A           77 FRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVM  154 (1204)
T ss_dssp             HSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHH
Confidence            2    22111   12344444433221   25689999999999999987444 2355566666666654 234455555


Q ss_pred             hHhhhhcCC------CChHH-----------HHHHHHHHHhhcCC-------------------CChhHHHHHHHHHHHH
Q 009632          147 GLFHIAYPS------APDIL-----------KTELRSIYTQLCQD-------------------DMPMVRRSAASNLGKF  190 (530)
Q Consensus       147 ~~l~~l~~~------~~~~~-----------~~~l~~~l~~l~~d-------------------~~~~vR~~a~~~l~~l  190 (530)
                      .++..+.+.      .....           .+.+++.+...+.+                   .+..++..+++++..+
T Consensus       155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~  234 (1204)
T 3a6p_A          155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY  234 (1204)
T ss_dssp             HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence            555554321      11111           12455555444432                   2345677777777766


Q ss_pred             HhhhcchhhH---HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hh---hhhcc----HHHHHHhc--------C
Q 009632          191 AATVEPAHLK---TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD---CVAHI----LPVIVNFS--------Q  251 (530)
Q Consensus       191 ~~~~~~~~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~---~~~~~----~~~l~~~~--------~  251 (530)
                      ....+.....   ..+++.+..++.+  +.+|..|++++..+.....+ +.   +...+    +..+....        .
T Consensus       235 l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~  312 (1204)
T 3a6p_A          235 IDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLV  312 (1204)
T ss_dssp             TTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCC
T ss_pred             HhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCc
Confidence            6554433322   2477777777765  57999999999999875432 21   11211    11122221        2


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhC----------CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--H-H---H
Q 009632          252 DKSWRVRYMVANQLYELCEAVG----------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--P-E---L  315 (530)
Q Consensus       252 d~~~~vr~~~~~~l~~l~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~-~---~  315 (530)
                      +.+..+++..++.+..++..+.          .......+++.++.++.+++.+|-..++.....+.+...  . +   .
T Consensus       313 e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~  392 (1204)
T 3a6p_A          313 EKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLA  392 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHH
Confidence            2345667777777766653321          122235688999999999888888887777766665432  1 1   2


Q ss_pred             HHhhhhHhHhH---hc---cCC---------------------cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc
Q 009632          316 AIQHILPCVKE---LS---SDS---------------------SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  368 (530)
Q Consensus       316 ~~~~l~~~l~~---~~---~d~---------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  368 (530)
                      +...+++.+..   -+   .+.                     -+..|......+..++...+ ......+.+.+...+.
T Consensus       393 ~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~  471 (1204)
T 3a6p_A          393 IIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLS  471 (1204)
T ss_dssp             HHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHh
Confidence            33444444411   01   000                     02456655555555554432 3334445555544443


Q ss_pred             CC-------------------------ChHHHHHHHHhhHHhhhhhc----hhHHHhhHHHHHHHHh---cCCChHHHHH
Q 009632          369 DE-------------------------FPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELA---EDRHWRVRLA  416 (530)
Q Consensus       369 d~-------------------------~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~~---~~~~~~~R~~  416 (530)
                      +.                         .+...++....+..+...+.    .+.....+.+.+...+   ...++.+|..
T Consensus       472 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~  551 (1204)
T 3a6p_A          472 TFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSC  551 (1204)
T ss_dssp             CC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHH
T ss_pred             hhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHH
Confidence            21                         11233444444444443331    0111112344444442   3357889999


Q ss_pred             HHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcC------------CcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHH
Q 009632          417 IIEYIPLLASQLGV-GFFDDKLGALCMQWLQD------------KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVL  481 (530)
Q Consensus       417 ~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d------------~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~  481 (530)
                      .+.+++.+...+.. ..+...++..++..+.+            .+..||..|+.++..++..++....  .+.+...+.
T Consensus       552 ~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~  631 (1204)
T 3a6p_A          552 VLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVK  631 (1204)
T ss_dssp             HHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999988877652 23455667777766666            3558999999999999998865432  244555555


Q ss_pred             hhccCC---ChHHHHHHHHHHHHHhhhcCh
Q 009632          482 EMINNP---HYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       482 ~~~~d~---~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      ..+...   +..-+....++++.++..+++
T Consensus       632 ~~l~~~~~l~~~e~~~L~eal~~ia~~~~~  661 (1204)
T 3a6p_A          632 QLLSNELLLTQMEKCALMEALVLISNQFKN  661 (1204)
T ss_dssp             HHHHSTTTSCHHHHHHHHHHHHHHHGGGCC
T ss_pred             HHHhCcccccHHHHHHHHHHHHHHhccCCC
Confidence            555433   355677788888888655543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.29  E-value=3.8e-11  Score=124.46  Aligned_cols=302  Identities=13%  Similarity=0.141  Sum_probs=213.8

Q ss_pred             CCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChH-hhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCC-
Q 009632            4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE-RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG-   80 (530)
Q Consensus         4 ~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~-   80 (530)
                      +++++..+..+++.+...+...|..+...+..+...-+.. .....++..+.. +.+....  ..+...++.+....+. 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~   86 (986)
T 2iw3_A            9 SQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLS   86 (986)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCC
T ss_pred             ccchHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCC
Confidence            4455666777888888766777788887777654321111 111123333433 3343333  5566666666655442 


Q ss_pred             ccchh---cchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc-CCccchhHHHHhHhhhhcCCC
Q 009632           81 VEHAH---VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSA  156 (530)
Q Consensus        81 ~~~~~---~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~  156 (530)
                      .....   .++|.+...+.|+...||.+|-.+...+++.+++... ..++|.+...+. ...|..+..+..++..+....
T Consensus        87 ~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~  165 (986)
T 2iw3_A           87 PSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA  165 (986)
T ss_dssp             TTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence            22233   3566677778899999999999999999999999887 445555555544 447999999999999999877


Q ss_pred             ChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632          157 PDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (530)
Q Consensus       157 ~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  233 (530)
                      +++   ..++++|.+.+.+.|.-++|++++..++..++..+++..+ ..++|.+++.+.+++. |-+ ++..|+... ++
T Consensus       166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-~~~-~~~~l~~~t-fv  241 (986)
T 2iw3_A          166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-VPE-TVHLLGATT-FV  241 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-HHH-HHHHHTTCC-CC
T ss_pred             HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-hHH-HHHHhhcCe-eE
Confidence            554   5789999999999999999999999999999999888665 4477999999998853 333 233332211 01


Q ss_pred             C--chhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcC-CCcHHHHHHHHHHHHH
Q 009632          234 E--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTK  306 (530)
Q Consensus       234 ~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~  306 (530)
                      .  .+.....+.|.+...+++.+..+++.++-.+.++++...+..    +...++|.+.+... -.+|++|..+-+++..
T Consensus       242 ~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~  321 (986)
T 2iw3_A          242 AEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKT  321 (986)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred             eeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence            1  122355689999999999999999999999999998877643    35566666666553 4569999999999988


Q ss_pred             HHHhhC
Q 009632          307 FCRILN  312 (530)
Q Consensus       307 ~~~~~~  312 (530)
                      +....+
T Consensus       322 l~~~~~  327 (986)
T 2iw3_A          322 LRRVGN  327 (986)
T ss_dssp             HHHHHT
T ss_pred             HHHhhc
Confidence            866543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.27  E-value=5.5e-08  Score=103.27  Aligned_cols=306  Identities=9%  Similarity=0.053  Sum_probs=173.9

Q ss_pred             HHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCchhh-hhccHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 009632          201 TDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEPT  277 (530)
Q Consensus       201 ~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l-~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~  277 (530)
                      +.+++.+.+.+.. .++.+...+++++..+..-++...+ .+.+++.+ ...+.  ++..|..++++|..+...-. +.+
T Consensus       205 ~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~-~~~  281 (1073)
T 3gjx_A          205 SQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSV-SQY  281 (1073)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCS-GGG
T ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccc-cch
Confidence            3455666655543 4567778888888888877665432 34577766 45554  46799999999998876411 111


Q ss_pred             ccchHHHH---H----Hhc-------------CCCcHHHHHHHHHHHHHHHHhh------CHH--HHHhhhhHhHhHhcc
Q 009632          278 RMDLVPAY---V----RLL-------------RDNEAEVRIAAAGKVTKFCRIL------NPE--LAIQHILPCVKELSS  329 (530)
Q Consensus       278 ~~~l~~~l---~----~~l-------------~d~~~~vr~~a~~~l~~~~~~~------~~~--~~~~~l~~~l~~~~~  329 (530)
                      .+.+...+   +    +.+             .+.+.+.-.+....+..+++..      +++  ......+.++..+..
T Consensus       282 ~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~  361 (1073)
T 3gjx_A          282 EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE  361 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC
Confidence            12221111   1    111             2222333233333333333221      111  111223334455555


Q ss_pred             CCcHHHHHHHHHHHHhhccccC----------------------H-----HHHHHhHHHHHHHhhcCCC----------h
Q 009632          330 DSSQHVRSALASVIMGMAPLLG----------------------K-----DATIEQLLPIFLSLLKDEF----------P  372 (530)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~~----------------------~-----~~~~~~l~~~l~~~l~d~~----------~  372 (530)
                      .++..+-......+..+...+-                      .     ..+...+...+..-+.-+.          .
T Consensus       362 ~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge  441 (1073)
T 3gjx_A          362 VEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGE  441 (1073)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccch
Confidence            6666666666666555433211                      0     1122233333333332110          0


Q ss_pred             ------------HHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhCh---hhHHH
Q 009632          373 ------------DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV---GFFDD  435 (530)
Q Consensus       373 ------------~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~---~~~~~  435 (530)
                                  ..+...-+++..+. .++.+...+.+++.+.+....  .+|..+.+++.+++.++..+..   +.+..
T Consensus       442 ~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          442 VVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence                        12222223333332 334444445666766655443  4699999999999999877764   24667


Q ss_pred             HHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHhChhH-HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChH
Q 009632          436 KLGALCMQWLQDK-----VYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       436 ~~~~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      .+++.+..+...+     .+-|+...+.++|+..+.+..++ ....++..+...+.+++..|+.+|+.++..+++.++..
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7788887776433     44577777789998877764433 23667777888889999999999999999999887754


Q ss_pred             H
Q 009632          510 I  510 (530)
Q Consensus       510 ~  510 (530)
                      .
T Consensus       601 l  601 (1073)
T 3gjx_A          601 F  601 (1073)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.26  E-value=1.1e-07  Score=100.89  Aligned_cols=493  Identities=8%  Similarity=0.042  Sum_probs=285.3

Q ss_pred             CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----CCCcc
Q 009632            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE   82 (530)
Q Consensus         7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~----~~~~~   82 (530)
                      ++..+..++..+.++++..|..|-+.|.++-.   ....+..+...+.  .+.++++|..++..|.+.++.    ++..+
T Consensus        26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~---sp~aw~~~~~iL~--~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~  100 (1073)
T 3gjx_A           26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE---HPDAWTRVDTILE--FSQNMNTKYYGLQILENVIKTRWKILPRNQ  100 (1073)
T ss_dssp             SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC---CSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc---CchHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence            34467788999999999999999988876522   1223444444443  245789999999999766552    22111


Q ss_pred             ---chhcchhHHHhhhcc-----cchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632           83 ---HAHVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (530)
Q Consensus        83 ---~~~~l~~~l~~l~~d-----~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~  154 (530)
                         ....++..+.....+     .++.++...+.++..+++..-++. ++.+++.+....+. ++..+.....++..+.+
T Consensus       101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~E  178 (1073)
T 3gjx_A          101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRT-SESLCQNNMVILKLLSE  178 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence               234566666554433     357788888999999988643332 33344444444432 12233344444444332


Q ss_pred             CC--------ChH-----------HHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcchhh-HHHHHHHH-HHhhc
Q 009632          155 SA--------PDI-----------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHL-KTDIMSIF-EDLTQ  212 (530)
Q Consensus       155 ~~--------~~~-----------~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~l~~~l-~~~~~  212 (530)
                      .+        +..           ..+.+++.+...+. ..++.+...++++++.+...++-..+ .+.+++.+ ..++.
T Consensus       179 EV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~  258 (1073)
T 3gjx_A          179 EVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN  258 (1073)
T ss_dssp             HHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS
T ss_pred             HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC
Confidence            21        111           12345555555443 45778889999999999988765433 34577766 46664


Q ss_pred             CCchhHHHHHHHHHHHHhhhcCchhhhhc-------cHHHHHHhc-------------CCCCHHHHHHHHHHHHHHHHHh
Q 009632          213 DDQDSVRLLAVEGCAALGKLLEPQDCVAH-------ILPVIVNFS-------------QDKSWRVRYMVANQLYELCEAV  272 (530)
Q Consensus       213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-------~~~~l~~~~-------------~d~~~~vr~~~~~~l~~l~~~~  272 (530)
                        ++..|..|++++..+...-.+ .+.+.       ++..+...+             .+.+...-...+..+..+++..
T Consensus       259 --~~~~r~aA~dcL~eIv~k~~~-~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~  335 (1073)
T 3gjx_A          259 --VPMFRNVSLKCLTEIAGVSVS-QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH  335 (1073)
T ss_dssp             --SHHHHHHHHHHHHHHHHSCSG-GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             --ChHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence              467999999999998765211 11111       111111111             2233344444555555555432


Q ss_pred             CC----c-cccc---chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--------------------HHHhhhhHhH
Q 009632          273 GP----E-PTRM---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--------------------LAIQHILPCV  324 (530)
Q Consensus       273 ~~----~-~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--------------------~~~~~l~~~l  324 (530)
                      ..    . ....   ..+..++.+...++.++-+.++.....+...+-.+                    .....+.|.+
T Consensus       336 ~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~  415 (1073)
T 3gjx_A          336 GQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVL  415 (1073)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHH
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHH
Confidence            11    1 1111   22333455556677788777777665555432100                    0111122222


Q ss_pred             hHh-------cc---------------------CCcH-HHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC--CChH
Q 009632          325 KEL-------SS---------------------DSSQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPD  373 (530)
Q Consensus       325 ~~~-------~~---------------------d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~  373 (530)
                      .++       +.                     |.+. ..+...-.++..+. .++.+.....+.+.+...+..  .+|.
T Consensus       416 ~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~  494 (1073)
T 3gjx_A          416 SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWK  494 (1073)
T ss_dssp             HHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHH
T ss_pred             HHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHH
Confidence            111       11                     1111 12222223333332 334455566666767666553  4699


Q ss_pred             HHHHHHHhhHHhhhhhchh---HHHhhHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHH
Q 009632          374 VRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQW  444 (530)
Q Consensus       374 vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~~~-----~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~  444 (530)
                      .+++++-+++.+.+.+.++   .+...+++.|..+...+     ...+|...+..+|.....+.. ..+...++..+++.
T Consensus       495 ~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~  574 (1073)
T 3gjx_A          495 NLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEF  574 (1073)
T ss_dssp             HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHH
Confidence            9999999999998776642   34466777777666544     234666666788777665532 22455677778888


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHhChhHHh----------hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632          445 LQDKVYSIRDAAANNLKRLAEEFGPEWAM----------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (530)
Q Consensus       445 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----------~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~  510 (530)
                      +.|+++.|..+|+.++..+++.++.....          +.++..+.....+-..+-.....++++.++...|.+.
T Consensus       575 m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~  650 (1073)
T 3gjx_A          575 MHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQT  650 (1073)
T ss_dssp             TTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999998765422          2233333334445466677789999999999988643

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.18  E-value=2.4e-09  Score=93.81  Aligned_cols=139  Identities=12%  Similarity=0.133  Sum_probs=119.2

Q ss_pred             cCCCChhHHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHH
Q 009632          172 CQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV  245 (530)
Q Consensus       172 ~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  245 (530)
                      +.|+++.|-..+++.+..+...+..      +.....++|.+.+-++|+.+.||..+-..+..+...+++.    .+.++
T Consensus        96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~  171 (266)
T 2of3_A           96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPM  171 (266)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHH
Confidence            4488999999999999998876654      2224678999999999999999999999998888877654    36777


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchH---HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 009632          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV---PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  316 (530)
Q Consensus       246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  316 (530)
                      +.+.+++++|++|..++..++.+.+..|...  ...+   |.+.+++.|.+..||.+|+.++..+....|...+
T Consensus       172 l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~  243 (266)
T 2of3_A          172 LLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW  243 (266)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            7778899999999999999999999999763  4567   9999999999999999999999999998887643

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.17  E-value=6.8e-10  Score=104.23  Aligned_cols=257  Identities=12%  Similarity=0.067  Sum_probs=171.1

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccH
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  243 (530)
                      +.+.+..-+-|+.|++|+.|+.+|.++.+..+...-..        ...+.+-.+|..++-++..++...++..    + 
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDqV----V-  241 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDRT----V-  241 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSSC----B-
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCee----e-
Confidence            56667777789999999999999999998765411000        0112244567766666666666555432    2 


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHh
Q 009632          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (530)
Q Consensus       244 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~  323 (530)
                                 ..||++++++|+.+ ..+..+   -.++..++..+..+.|+||.+++-.+..+...+..   .+.+++.
T Consensus       242 -----------APVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a  303 (800)
T 3oc3_A          242 -----------APVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK  303 (800)
T ss_dssp             -----------CHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred             -----------eehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence                       23899999999998 666655   24455555566778899999999888887333332   4677888


Q ss_pred             HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (530)
Q Consensus       324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  403 (530)
                      +...+.|.+..||..++.++..++..-.-......++..+.++  |+-...-......|+.++..-......+.++|.+.
T Consensus       304 VL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L--DDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~  381 (800)
T 3oc3_A          304 LVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESE--ELISVSKTSNLSLLTKIYRENPELSIPPERLKDIF  381 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC--CSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTG
T ss_pred             HHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh--cccchhhHHHHHHHHHHHcCCcccccChHHHHHHH
Confidence            8888899999999999999988882212233333444444433  33334445555666666553221112247888888


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHH-HHHHHhcCCcHHHHHHHHHHHH
Q 009632          404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA-LCMQWLQDKVYSIRDAAANNLK  461 (530)
Q Consensus       404 ~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~-~l~~~l~d~~~~Vr~~a~~~l~  461 (530)
                      .++.++-..||.+++.++..+.   .     ..++. ++.+++-++..+|+..+.+++.
T Consensus       382 PFLRHtITSVR~AVL~TL~tfL---~-----~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          382 PCFTSPVPEVRTSILNMVKNLS---E-----ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGTCSSHHHHHHHHHHTTTCC---C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             hhhcCCcHHHHHHHHHHHHHHH---h-----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            8899999999999999997765   1     12333 3455677899999999999885

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.15  E-value=9.3e-10  Score=101.41  Aligned_cols=291  Identities=13%  Similarity=0.023  Sum_probs=167.3

Q ss_pred             CCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632          154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (530)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  233 (530)
                      ..++......+..-+.+++..++...|+....++..+++. +++. . -+.+.+.+-++|+++.+|..|+.+++.+..  
T Consensus        59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~-i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--  133 (355)
T 3tjz_B           59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV-I-IVTSSLTKDMTGKEDSYRGPAVRALCQITD--  133 (355)
T ss_dssp             CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG-G-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred             CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH-H-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence            4455556667778888899999999999999999888876 3333 2 678889999999999999999999998854  


Q ss_pred             CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 009632          234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (530)
Q Consensus       234 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  313 (530)
                        ....+.+.+.+.+.+.|+++.||..|+-+...+....+ +. .+.+++.+.+++.|.++-|..+|+..+..+.+.- .
T Consensus       134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~  208 (355)
T 3tjz_B          134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-R  208 (355)
T ss_dssp             --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-H
T ss_pred             --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-h
Confidence              24567799999999999999999999988877754322 22 3467888888999999999999999888887532 1


Q ss_pred             HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH
Q 009632          314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (530)
Q Consensus       314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  393 (530)
                      . ....+++.+... .-.++......++.+..++..- .......+.+.+..+|+..++.|...|+.++-.+.. .+.. 
T Consensus       209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-  283 (355)
T 3tjz_B          209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-  283 (355)
T ss_dssp             H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred             H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-
Confidence            1 223444444321 1123444444555554443321 012356788888999999999999999888877644 2211 


Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 009632          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (530)
Q Consensus       394 ~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~  461 (530)
                      ......+.+..++++++..+|..++..+..++......  ....-.-+..+++|++..++..|+-+|-
T Consensus       284 ~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Aittll  349 (355)
T 3tjz_B          284 ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAITTLL  349 (355)
T ss_dssp             ----CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence            11233445556677777788888888888887643321  1223344667778888777777666553

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.14  E-value=1e-08  Score=95.87  Aligned_cols=216  Identities=12%  Similarity=0.029  Sum_probs=156.6

Q ss_pred             cHHHHHHHHHHHHHHHHhhC-HH-HH--HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHH-HHhHHHHHH
Q 009632          293 EAEVRIAAAGKVTKFCRILN-PE-LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DAT-IEQLLPIFL  364 (530)
Q Consensus       293 ~~~vr~~a~~~l~~~~~~~~-~~-~~--~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~  364 (530)
                      +++++..|+.+|..++..-. .. .+  ....+|.+..++.+.+..++..++..+..++..-+.   ..+ ....+|.+.
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            46788999999988875322 11 22  134588888888888899999999988888653121   111 234578888


Q ss_pred             Hh-hcCCChHHHHHHHHhhHHhhhhh-c-hhHH--HhhHHHHHHHHhcCCCh----HHHHHHHHHHHHHHhhh--Chhh-
Q 009632          365 SL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL--SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQL--GVGF-  432 (530)
Q Consensus       365 ~~-l~d~~~~vr~~a~~~l~~l~~~~-~-~~~~--~~~l~~~l~~~~~~~~~----~~R~~~~~~l~~l~~~~--~~~~-  432 (530)
                      .+ ++..+..++..++.++.++...- + ...+  ....+|.|.+++.+.+.    .++..++.++..++..+  +.+. 
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            86 46678899999999998887622 1 1122  25688999999876543    58999999999988631  2222 


Q ss_pred             --H-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC---hhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632          433 --F-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (530)
Q Consensus       433 --~-~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~  506 (530)
                        + ....+|.+..++.+....+++.|+.+|..++..-.   ........+|.|.+++.+++..+|..|+.++.+++..-
T Consensus       257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence              1 13368999999999999999999999999873211   11223567999999999999999999999999999875


Q ss_pred             Ch
Q 009632          507 GS  508 (530)
Q Consensus       507 ~~  508 (530)
                      +.
T Consensus       337 ~~  338 (354)
T 3nmw_A          337 PA  338 (354)
T ss_dssp             CG
T ss_pred             HH
Confidence            43

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.09  E-value=7.3e-09  Score=97.42  Aligned_cols=254  Identities=13%  Similarity=0.013  Sum_probs=177.2

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhH
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~   90 (530)
                      ...|+..|.++.|..|.+|..+|.++.+..|....+.       ...+.+-.+|.-..-+|-+|+.++++.         
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDq---------  239 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDR---------  239 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSS---------
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCe---------
Confidence            4678899999999999999999999988876533222       211226677888888888888877731         


Q ss_pred             HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh
Q 009632           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (530)
Q Consensus        91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~  170 (530)
                             --..||+.|+++|+.+ ..++++  .. ++..+......+.|.+|+.+...+..+...+..  .+.+++.+..
T Consensus       240 -------VVAPVRETaAQtLGaL-~hLp~e--~~-IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~  306 (800)
T 3oc3_A          240 -------TVAPVRDAAAYLLSRI-YPLIGP--ND-IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVS  306 (800)
T ss_dssp             -------CBCHHHHHHHHHHHHH-TTTSCS--CC-HHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHH
T ss_pred             -------eeeehHHHHHHHHHHH-HhCChh--HH-HHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHh
Confidence                   2478999999999999 888776  22 232232344667899999887777766333322  6888999999


Q ss_pred             hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhhhcCchhhhhccHHHHHH
Q 009632          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVN  248 (530)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  248 (530)
                      .+.|++..||..|+.+|..++   .+ ...+.++..+...+.+-++  .--...+..|+.+..+-......+.++|.+..
T Consensus       307 GL~D~DDDVRAVAAetLiPIA---~p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~P  382 (800)
T 3oc3_A          307 LLSSPDEDIKLLSAELLCHFP---IT-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFP  382 (800)
T ss_dssp             HTTCSSHHHHHHHHHHHTTSC---CS-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGG
T ss_pred             hcCCcccHHHHHHHHHhhhhc---ch-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHh
Confidence            999999999999999999988   22 2345556655555554322  22333455566665543322223478888888


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHH-HHHHhcCCCcHHHHHHHHHHHH
Q 009632          249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP-AYVRLLRDNEAEVRIAAAGKVT  305 (530)
Q Consensus       249 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~  305 (530)
                      .+.+.-..||.++.+++..+.        ...++. .+.+++-+++++|+..+.+...
T Consensus       383 FLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          383 CFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             hhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999999999999999887665        223333 3455667888899998888774

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.09  E-value=7.2e-09  Score=96.86  Aligned_cols=215  Identities=12%  Similarity=0.074  Sum_probs=153.9

Q ss_pred             CHHHHHHHHHHHHHHHHHhC--Cccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---H-HHhhhhHhHh
Q 009632          254 SWRVRYMVANQLYELCEAVG--PEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---L-AIQHILPCVK  325 (530)
Q Consensus       254 ~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~-~~~~l~~~l~  325 (530)
                      +..++..++.+|.+++..-.  +...  ....+|.+++++.+++++++..|+.+|..++..-+.+   . .....+|.+.
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            35677777777777763211  0011  2346899999999999999999999999997642221   1 2234577777


Q ss_pred             Hh-ccCCcHHHHHHHHHHHHhhccccC--HHHH--HHhHHHHHHHhhcCCCh----HHHHHHHHhhHHhhhhh--chh--
Q 009632          326 EL-SSDSSQHVRSALASVIMGMAPLLG--KDAT--IEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVI--GID--  392 (530)
Q Consensus       326 ~~-~~d~~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~--  392 (530)
                      ++ ..+.+..++..++.++..++....  ...+  ....+|.+..+|.+.+.    .++..++.+|.++...+  +++  
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            75 566788899988888888876332  1222  24678999999987654    58999999998887531  111  


Q ss_pred             -HH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--h-hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          393 -LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       393 -~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                       .+ ....+|.|..++.+.+..++..|+.++..++..-.  . .......+|.+..++.+++..+|+.|+.+|..+...-
T Consensus       257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence             11 23578999999999999999999999999974211  1 1122347899999999999999999999999998764


Q ss_pred             C
Q 009632          468 G  468 (530)
Q Consensus       468 ~  468 (530)
                      +
T Consensus       337 ~  337 (354)
T 3nmw_A          337 P  337 (354)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.09  E-value=3.4e-08  Score=82.32  Aligned_cols=214  Identities=13%  Similarity=0.108  Sum_probs=166.6

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hh
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD  237 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~  237 (530)
                      ++.+..+.++++|.++.++..++.++..+.+.+++   ....+.++|.+.+++.++++.|-..|++++..+....+. +.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            34677888999999999999999999999998765   345678999999999999999999999999999988654 23


Q ss_pred             hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 009632          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI  317 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  317 (530)
                      .+..+...+.....+++.-.+..++..++.+    ........+..++.+++...++.++.+++.++..++..-+.....
T Consensus       112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~  187 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL  187 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence            3456888888899999999999999999888    222224578899999999999999999999999999877666556


Q ss_pred             hhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH---HHhHHHHHHHhh-cCCChHHHHHHH
Q 009632          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLL-KDEFPDVRLNII  379 (530)
Q Consensus       318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l-~d~~~~vr~~a~  379 (530)
                      +.++.-+..++++.++.++.-++..+-.+...--.+..   ...++...-++. ..+.+.+|..|-
T Consensus       188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~  253 (265)
T 3b2a_A          188 TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAK  253 (265)
T ss_dssp             GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence            77888888889999999999999888877653211111   223344444444 455666666653

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.08  E-value=1.2e-07  Score=103.82  Aligned_cols=454  Identities=10%  Similarity=-0.037  Sum_probs=258.8

Q ss_pred             CchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhh----cChh---hhhhhHHHHHH
Q 009632           59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVK  131 (530)
Q Consensus        59 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~----~~~~---~~~~~l~~~l~  131 (530)
                      .++++|+.|-..|..+-+.   ++.+..+.-.|.  ..+.+..+|..|+..|.+.++.    ++++   .++..++..+.
T Consensus        25 ~~~~~r~~Ae~~L~~~~~~---p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~   99 (1204)
T 3a6p_A           25 STQRYRLEALKFCEEFKEK---CPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIA   99 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHH---CTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhC---chHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            3667899898888877442   222222222221  2456889999999999998753    3332   23444555544


Q ss_pred             HHhc---CCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-----h------
Q 009632          132 RLAA---GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-----A------  197 (530)
Q Consensus       132 ~l~~---~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-----~------  197 (530)
                      ....   ++...+|...+.+++.++..--++.++++++.+..+++. ++..+..++..|..+.+-...     .      
T Consensus       100 ~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l  178 (1204)
T 3a6p_A          100 NGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDI  178 (1204)
T ss_dssp             HSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHH
T ss_pred             hhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence            3221   134678888888888877664445677788888777754 566788888888888754211     0      


Q ss_pred             -----hhHHHHHHHHHHhhcC-------------------CchhHHHHHHHHHHHHhhhcCchhhh---hccHHHHHHhc
Q 009632          198 -----HLKTDIMSIFEDLTQD-------------------DQDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFS  250 (530)
Q Consensus       198 -----~~~~~l~~~l~~~~~d-------------------~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~~~  250 (530)
                           ...+.+++.+.+.+.+                   ++..++..+++++..+..-.+.....   ..+++.+..++
T Consensus       179 ~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l  258 (1204)
T 3a6p_A          179 QQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLL  258 (1204)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHc
Confidence                 0122455555555543                   23346777777777665544433222   23778777777


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCcc----cccch----HHHHHHhc--------CCCcHHHHHHHHHHHHHHHHhhC--
Q 009632          251 QDKSWRVRYMVANQLYELCEAVGPEP----TRMDL----VPAYVRLL--------RDNEAEVRIAAAGKVTKFCRILN--  312 (530)
Q Consensus       251 ~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l----~~~l~~~l--------~d~~~~vr~~a~~~l~~~~~~~~--  312 (530)
                      .+  +.+|..++++|..++..-.+..    ....+    +..+++..        .+.+.++++...+.+..++....  
T Consensus       259 ~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l  336 (1204)
T 3a6p_A          259 NE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCAL  336 (1204)
T ss_dssp             GC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65  4589999999999986432111    01111    11222222        22335566666655555542211  


Q ss_pred             --------HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc--CH----HHHHHhHHHHHHH---hhc---CCC-
Q 009632          313 --------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL--GK----DATIEQLLPIFLS---LLK---DEF-  371 (530)
Q Consensus       313 --------~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~----~~~~~~l~~~l~~---~l~---d~~-  371 (530)
                              .......+++.+..+..+++..+-..++..+..+.+..  +.    ..+...+++.+..   -++   +.+ 
T Consensus       337 ~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~  416 (1204)
T 3a6p_A          337 LGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDS  416 (1204)
T ss_dssp             HHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSS
T ss_pred             HhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence                    11123567888888888888888888888877665442  11    2234555555522   111   000 


Q ss_pred             --------------------hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc------------------------
Q 009632          372 --------------------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------------------------  407 (530)
Q Consensus       372 --------------------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~------------------------  407 (530)
                                          .+.|......+..++...+... ...+.+.+...+.                        
T Consensus       417 ~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~-l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  495 (1204)
T 3a6p_A          417 PSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTS-FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSV  495 (1204)
T ss_dssp             THHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHTCC-----------------CCSCS
T ss_pred             cchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHhhhhcccccccccccccccccccCc
Confidence                                1356666777776665543322 2334444433322                        


Q ss_pred             -CCChHHHHHHHHHHHHHHhhh---C-hhhHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHhChh-HHhhhhHH
Q 009632          408 -DRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITP  478 (530)
Q Consensus       408 -~~~~~~R~~~~~~l~~l~~~~---~-~~~~~~~~~~~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~  478 (530)
                       ++.|..+.+....+..++..+   . .+.....+.|.++..+   ...++.+|..++.+++.+...+... .....++.
T Consensus       496 ~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~  575 (1204)
T 3a6p_A          496 FSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFS  575 (1204)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence             234666677666676666554   1 1111112344444432   3457789999999999888776422 12234455


Q ss_pred             HHHhhccC------------CChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHh
Q 009632          479 QVLEMINN------------PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVIN  521 (530)
Q Consensus       479 ~l~~~~~d------------~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~  521 (530)
                      .+...+.+            .+.++|..|+.++..++..++..  .+.+.+...+..
T Consensus       576 ~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~  632 (1204)
T 3a6p_A          576 KLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQ  632 (1204)
T ss_dssp             HHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred             HHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45544444            34589999999999999887543  234444444444

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.07  E-value=7.2e-08  Score=84.56  Aligned_cols=180  Identities=10%  Similarity=0.083  Sum_probs=130.9

Q ss_pred             HhHhccCCcHHHHHHHHHHHHhhccccCHHHH---HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh------HH
Q 009632          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------LL  394 (530)
Q Consensus       324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~  394 (530)
                      +...+-+++|+.|..+++.+....+... +..   .+.+++.+.-.+.|.+..|-..+++.+..+...++..      ..
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e  129 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE  129 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            3444456788888877777776544322 222   1223333333445888888888888888887666542      11


Q ss_pred             HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhh
Q 009632          395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ  474 (530)
Q Consensus       395 ~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~  474 (530)
                      ...++|.+.+-+.|+...+|..+-..+..+....++    ..+++.+...+.++++.+|...+..++.+...+|..  ..
T Consensus       130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~  203 (266)
T 2of3_A          130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PL  203 (266)
T ss_dssp             HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GG
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--cc
Confidence            256889988888898888998888888777765543    346777888888889999999999999999888876  34


Q ss_pred             hhH---HHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632          475 HIT---PQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (530)
Q Consensus       475 ~i~---~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~  510 (530)
                      ..+   |.+.++++|+|..||.+|+.++..+....|...
T Consensus       204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            567   888889999999999999999998888887653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.5e-09  Score=98.72  Aligned_cols=179  Identities=15%  Similarity=0.094  Sum_probs=83.6

Q ss_pred             HhccCCcHHHHHHHHHHHHhhccccCHHHH-------HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh------
Q 009632          326 ELSSDSSQHVRSALASVIMGMAPLLGKDAT-------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------  392 (530)
Q Consensus       326 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------  392 (530)
                      +-+.+++|..|..+++.+..+.........       ...+.+.+...+.|.+..|...++.++..++...+..      
T Consensus        16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~   95 (278)
T 4ffb_C           16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH   95 (278)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred             HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence            334555555555555555443322211100       1122344445555555556555555555555443321      


Q ss_pred             --HHHhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632          393 --LLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (530)
Q Consensus       393 --~~~~~l~~~l~~~-~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  469 (530)
                        .....++|.+.+- +.+....+|..++.++..++...+..   ..+++.+...+..+++.||..++..|..+...+|.
T Consensus        96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~  172 (278)
T 4ffb_C           96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL  172 (278)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence              1123444544433 45555555655555555554433221   12334444555556666666666666665555543


Q ss_pred             hHH-----hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632          470 EWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       470 ~~~-----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      ...     ...+++.+..+++|+|..||..|..+++.+...+|
T Consensus       173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G  215 (278)
T 4ffb_C          173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG  215 (278)
T ss_dssp             TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred             CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            311     12234444445556666666666666666555555

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.04  E-value=1.5e-07  Score=74.93  Aligned_cols=216  Identities=16%  Similarity=0.094  Sum_probs=154.1

Q ss_pred             hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHH
Q 009632           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL  164 (530)
Q Consensus        85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l  164 (530)
                      ..++.-+-.++.|+-|.||..|+..+..+++..+. .....+-.++.-+.+++.-..-......+|.++. ..++....+
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-i~Pe~v~~v  108 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-EKPELVKSM  108 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-hCHHHHHhh
Confidence            34455566677788899999999999999987654 2233333333333455543333445556665553 345667778


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  244 (530)
                      +|.+..-..-.++.+|-....+|+.++...|  .....++.-+..++++++..-|..|+..++.++..-.  .+...++|
T Consensus       109 Vp~lfanyrigd~kikIn~~yaLeeIaranP--~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~--~yv~PfLp  184 (253)
T 2db0_A          109 IPVLFANYRIGDEKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF--KYVNPFLP  184 (253)
T ss_dssp             HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH--HHHGGGHH
T ss_pred             HHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc--cccCcchH
Confidence            8888887776789999999999999987543  3345666777788899998889999888887765422  35666888


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (530)
Q Consensus       245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  309 (530)
                      -+..++.|.+.-||.++.++++.++..-.   ...+++.--++-++|++..|......+++.+.-
T Consensus       185 rL~aLL~D~deiVRaSaVEtL~~lA~~np---klRkii~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          185 RIINLLHDGDEIVRASAVEALVHLATLND---KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHHGGGGCSSHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcchhhhHHHHHHHHHHHHcCH---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999985411   123444455666789998898888888887753

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.04  E-value=9.5e-09  Score=93.47  Aligned_cols=181  Identities=11%  Similarity=0.050  Sum_probs=121.3

Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHH----H---HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH------
Q 009632          287 RLLRDNEAEVRIAAAGKVTKFCRILNPE----L---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD------  353 (530)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------  353 (530)
                      +-+.+.+|..|..|+..+..+.......    .   ....+.+.+...+.|.|..+...+++++..++..++..      
T Consensus        16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~   95 (278)
T 4ffb_C           16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH   95 (278)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred             HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence            4444455555555555444444322111    0   01234555666677777777777777777776655421      


Q ss_pred             --HHHHhHHHHHH-HhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh
Q 009632          354 --ATIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  430 (530)
Q Consensus       354 --~~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~  430 (530)
                        .+...++|.+. .++.|....+|..+..++-.++...+..   ..++..+...++++++.+|..++.++..+...+|.
T Consensus        96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~  172 (278)
T 4ffb_C           96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL  172 (278)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence              22345566665 4688999999999999888777654322   34566667778999999999999999999988875


Q ss_pred             hh-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632          431 GF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (530)
Q Consensus       431 ~~-----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  470 (530)
                      ..     ....+++.+..++.|++++||.+|..+++.+...+|+.
T Consensus       173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            43     33457778888999999999999999999999998854

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.03  E-value=2.3e-07  Score=73.95  Aligned_cols=214  Identities=15%  Similarity=0.146  Sum_probs=139.9

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 009632          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRM  279 (530)
Q Consensus       201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  279 (530)
                      ..++..+..++.|+-+.|++.|+..+..+++..+.-  ...++..+.. +-++.....-...+..+|.++..-+ + ...
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el--~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-e-~v~  106 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL--YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-E-LVK  106 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-H-HHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-H-HHH
Confidence            345555666666666666666666666666554321  1111111222 2345555566777888888876522 1 134


Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhH
Q 009632          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  359 (530)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  359 (530)
                      .++|.+..-..-.++.+|.+..++|+.++...+.  ....++.-+..++++++..-|..++..++.++..-  -.+...+
T Consensus       107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv~Pf  182 (253)
T 2db0_A          107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNPF  182 (253)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHHGGG
T ss_pred             hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--ccccCcc
Confidence            6788888877777889999999999999875322  23556666677788888888888888888876532  3456677


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 009632          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (530)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~  425 (530)
                      +|-+..+|.|.+.-||..++++|..+...-.  .+.+ ++..-.+-+.|.+..+.....+.++.+.
T Consensus       183 LprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRk-ii~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          183 LPRIINLLHDGDEIVRASAVEALVHLATLND--KLRK-VVIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHH-HHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999888876422  2322 3333334457777777777777777664

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.01  E-value=4.4e-08  Score=88.93  Aligned_cols=171  Identities=9%  Similarity=0.054  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhH-hccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhc
Q 009632          295 EVRIAAAGKVTKFCRILNPE--LAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLK  368 (530)
Q Consensus       295 ~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~  368 (530)
                      +-|..|+..|..++...+..  ......+|.+.. ++++++..+|..++.+++.++..-..   .......+|.+..+|+
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            56778888888888755432  222345677777 88999999999999999998754221   1223357889999998


Q ss_pred             -CCChHHHHHHHHhhHHhhhhhch--hHH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh----HHHHHHHH
Q 009632          369 -DEFPDVRLNIISKLDQVNQVIGI--DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGAL  440 (530)
Q Consensus       369 -d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~----~~~~~~~~  440 (530)
                       +++..+|..|+.+++.++....+  +.+ ....+|.|..++++++..+|..++.+++.++.. +.+.    ....++|.
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHH
Confidence             45889999999999999865432  222 246889999999999999999999999999876 3222    33458899


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632          441 CMQWLQDKVYSIRDAAANNLKRLAEE  466 (530)
Q Consensus       441 l~~~l~d~~~~Vr~~a~~~l~~l~~~  466 (530)
                      +..++.+++..||..++.+++.++..
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            99999999999999999999999876

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.00  E-value=4e-08  Score=90.61  Aligned_cols=285  Identities=9%  Similarity=0.046  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 009632          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM  279 (530)
Q Consensus       200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  279 (530)
                      ...+++-..+++..++...|....-.+..+++. +++ .. .+...+.+-++|+++.+|..+..+++.+..    ....+
T Consensus        66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~  138 (355)
T 3tjz_B           66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQ  138 (355)
T ss_dssp             HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHH
Confidence            456778888999999999999999888888876 322 22 577788888899999999999999988852    22356


Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhH
Q 009632          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  359 (530)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  359 (530)
                      .+.+.+.+.+.|.+|.||++|+-+...+... .++ ..+.+++.+.+++.|+++.|...++..+..+... + .....++
T Consensus       139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d-~~a~~kL  214 (355)
T 3tjz_B          139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFD-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-D-RLAVSKM  214 (355)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-C-HHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-c-hHHHHHH
Confidence            7889999999999999999999998877654 333 3367888888899999999998888888777643 2 1122333


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHH
Q 009632          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  439 (530)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~  439 (530)
                      ++.+... .-.++......+..+..++..- .....+.+++.+...+++.+..|-..|+.++..+.. .+... ......
T Consensus       215 v~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~-~~~a~~  290 (355)
T 3tjz_B          215 ISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE-LAPAVS  290 (355)
T ss_dssp             HHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCC
T ss_pred             HHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH-HHHHHH
Confidence            3333221 0113444444445444443321 012345778888888899999999999999987754 22221 123455


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632          440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL  501 (530)
Q Consensus       440 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~  501 (530)
                      .+..++..+++++|..|++.+..+......-  ....-..+.++++|+|..++..|+.++-+
T Consensus       291 ~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          291 VLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAITTLLK  350 (355)
T ss_dssp             THHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence            6677788888999999999999988765422  23455667788999998888877776543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.98  E-value=3.5e-08  Score=89.58  Aligned_cols=172  Identities=14%  Similarity=0.148  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHhhccccCH--HHHHHhHHHHHHH-hhcCCChHHHHHHHHhhHHhhhhhch---hHHHhhHHHHHHHHhc
Q 009632          334 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAE  407 (530)
Q Consensus       334 ~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~  407 (530)
                      .-|..++..+..++.....  .......+|.+.. +|+++++.+|..|+.+++.++..-..   ..+....+|.|..+++
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            3556666666666654322  1222345788888 99999999999999999999864221   1223467888888887


Q ss_pred             C-CChHHHHHHHHHHHHHHhhhCh--hhH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHhhhhHHHH
Q 009632          408 D-RHWRVRLAIIEYIPLLASQLGV--GFF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQV  480 (530)
Q Consensus       408 ~-~~~~~R~~~~~~l~~l~~~~~~--~~~-~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l  480 (530)
                      + ++..+|..|+.+++.++.....  +.| ....+|.+..++.+++..|+..|+.+++.++.....   ......++|.|
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L  214 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL  214 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence            4 5789999999999999864332  223 345899999999999999999999999999876221   12346789999


Q ss_pred             HhhccCCChHHHHHHHHHHHHHhhh
Q 009632          481 LEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       481 ~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      ..++.+++..+|..++.++++++..
T Consensus       215 v~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          215 VALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999876

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.95  E-value=2.3e-08  Score=84.45  Aligned_cols=139  Identities=17%  Similarity=0.176  Sum_probs=113.3

Q ss_pred             hhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh-hcCCCChhHHHHHHHHHHHHHhhhcchhhHH
Q 009632          123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKT  201 (530)
Q Consensus       123 ~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~  201 (530)
                      .+.+.++...+.+++.+.+|..|+.+++.+ .     ....+++.+.. +..|++|.||+.++.+++.++...+++.   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---  139 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---  139 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence            345788899999999999999999999887 3     22668888887 8889999999999999999997555542   


Q ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009632          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA  271 (530)
Q Consensus       202 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  271 (530)
                       .++.+...+.|++..||..|++.+...+.........+.++|.+..+..|+++.||.+++..|..+++.
T Consensus       140 -~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          140 -ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             -THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence             567888999999999999999987654443222333556899999999999999999999999998754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.95  E-value=3.2e-07  Score=76.55  Aligned_cols=181  Identities=12%  Similarity=0.038  Sum_probs=146.8

Q ss_pred             chhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC--hHHH
Q 009632           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--DILK  161 (530)
Q Consensus        87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~--~~~~  161 (530)
                      .+..+..++.|+|+.++..++.++..+.+..++..   ..+.+++.+..+..+++.++-..|.+++..+....+  ++..
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            55667778899999999999999999999876532   234467777778888888888889999998887754  4567


Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhc
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  241 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (530)
                      ..+...+..+..+++.-.+..++..++.+    ..-...+.+...+.+++...+..++.+|+.++..++..-++......
T Consensus       114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~  189 (265)
T 3b2a_A          114 LKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTL  189 (265)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGG
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHH
Confidence            77888888888888999999999998887    33333567888888888888899999999999999988777677777


Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEA  271 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  271 (530)
                      ++.-+..++++.++.++.-+...+..+...
T Consensus       190 I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          190 ILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             TTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            888888888888999999888887777643

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.89  E-value=3.7e-10  Score=89.81  Aligned_cols=122  Identities=16%  Similarity=0.199  Sum_probs=88.1

Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH
Q 009632          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  434 (530)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~  434 (530)
                      +.....+.+..+|+|+++.+|..++..|+.+..    .    . ++.+.+.++|+++.+|..++.+++.+..        
T Consensus         9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A            9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ------------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            344556778888999999999999888876532    1    2 4778888899999999999998887642        


Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL  501 (530)
Q Consensus       435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~  501 (530)
                      ...+|.+...+.|+++.||..|+.+|+.+.        ....++.|...++|++..||..+..+++.
T Consensus        72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            235777888888999999999999998763        13467888888889999999999988865

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.77  E-value=8.6e-08  Score=80.97  Aligned_cols=139  Identities=20%  Similarity=0.232  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 009632          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR  278 (530)
Q Consensus       200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  278 (530)
                      .+++++.+..+.+|+.++||..|+..++.. .      ....+++.+.. +..|++|+||..++..++.++...+.+   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            467889999999999999999999988776 2      12458888887 888999999999999999998755543   


Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (530)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  349 (530)
                       ..++.+..-+.|+++.||..|+..+...+.........+.++|.+..+..|+++.||.++...+..+++.
T Consensus       139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence             3678888889999999999998876543332111122245677888888888888888888888777654

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.76  E-value=1.9e-09  Score=85.61  Aligned_cols=120  Identities=16%  Similarity=0.132  Sum_probs=80.4

Q ss_pred             hhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhh
Q 009632          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (530)
Q Consensus       318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  397 (530)
                      +...+.+...++|+++.+|..++..++.+...        . .+.+..+++|+++.||..++.+++.+..        +.
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence            34456666667777888887777666555321        1 3667788888888888888888877642        24


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 009632          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR  462 (530)
Q Consensus       398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~  462 (530)
                      .++.+...+.|+++.+|..++.+++.+..        ...+|.+...++|+++.||..|+.+|+.
T Consensus        74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            56677777778888888888888887641        2356777888888888888888888764

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.63  E-value=1.5e-06  Score=91.74  Aligned_cols=370  Identities=11%  Similarity=0.023  Sum_probs=200.2

Q ss_pred             CCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHhhcC-CchhHHHHHHHHH
Q 009632          154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGC  226 (530)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l  226 (530)
                      ...++...+.+.+.+..++.|++..-.+++++.++.+......      +...+.+.|.+.+.+.+ -.++....=..++
T Consensus       499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i  578 (997)
T 1vsy_5          499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA  578 (997)
T ss_dssp             TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence            4556667788999999999999988999999999998764332      34567788999988884 4444333222222


Q ss_pred             HHHhhhcCchhhhhccHHHHHH----hc-CCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcCCCcHHHHHHH
Q 009632          227 AALGKLLEPQDCVAHILPVIVN----FS-QDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAA  300 (530)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~~l~~----~~-~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a  300 (530)
                      ..+....++.. ..-++..+..    +. ++.+.-....-...+..+....+-.. ....++..+.  +.++...||++.
T Consensus       579 ~~~~~~~DprR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~I  655 (997)
T 1vsy_5          579 WWLPAVVDLRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAV  655 (997)
T ss_dssp             HHHHHHSCGGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHH
T ss_pred             HHHhcCCChhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHH
Confidence            33333333322 1223333311    00 11111011111122333332222211 1233444444  566777888888


Q ss_pred             HHHHHHHHHhhC----------------------------HHHHHhhhh---HhHhHhcc---C--C-----cH--HHHH
Q 009632          301 AGKVTKFCRILN----------------------------PELAIQHIL---PCVKELSS---D--S-----SQ--HVRS  337 (530)
Q Consensus       301 ~~~l~~~~~~~~----------------------------~~~~~~~l~---~~l~~~~~---d--~-----~~--~vr~  337 (530)
                      ...|..+....-                            +..+.+.+.   ..+.....   +  +     +.  +.-.
T Consensus       656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~k  735 (997)
T 1vsy_5          656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTS  735 (997)
T ss_dssp             HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHH
T ss_pred             HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHH
Confidence            777776655430                            011111111   11111111   1  0     11  1223


Q ss_pred             HHHHHHHhhccccCHHH---HHH-hHHHHHHHhhcCCCh-HHHHH-HHHhhHHhhhhhchhHHHhhHHHHHHHHhc-CCC
Q 009632          338 ALASVIMGMAPLLGKDA---TIE-QLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH  410 (530)
Q Consensus       338 ~~~~~l~~l~~~~~~~~---~~~-~l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-~~~  410 (530)
                      .++.++...........   +.. .++|.++.+.++++. ++... +...+..+....-+....+.++..+.+..+ +++
T Consensus       736 Tvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s  815 (997)
T 1vsy_5          736 TIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS  815 (997)
T ss_dssp             HHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS
T ss_pred             HHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc
Confidence            44444433322211111   112 255555555554433 33333 334444443332233334556666666665 579


Q ss_pred             hHHHHHHHHHHHHHHhh----hChhhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhcc
Q 009632          411 WRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN  485 (530)
Q Consensus       411 ~~~R~~~~~~l~~l~~~----~~~~~~~~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~  485 (530)
                      | .|..++..+..+.-.    ++.+. ...+...+..+|.|+. .+||+.|+.+|+-+....+.......++..+.+.+.
T Consensus       816 W-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~  893 (997)
T 1vsy_5          816 N-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLD  893 (997)
T ss_dssp             S-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSST
T ss_pred             H-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            9 999999988766441    22322 3568889999999999 999999999999998765232222345555554442


Q ss_pred             C------------CChHHHHHHHHHHHHHhhhcChH----HHHhhHHHHHHhhccCCCC
Q 009632          486 N------------PHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRYL  528 (530)
Q Consensus       486 d------------~~~~vr~~a~~~l~~i~~~~~~~----~~~~~~~p~l~~~l~D~~~  528 (530)
                      .            .+...|.+++-+++.++.+.+-.    ...+.++..|-..+.|+-|
T Consensus       894 ~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~  952 (997)
T 1vsy_5          894 VNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM  952 (997)
T ss_dssp             TTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS
T ss_pred             hcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc
Confidence            2            12257899999999999987733    4566777777778887543

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.54  E-value=9.5e-07  Score=93.18  Aligned_cols=384  Identities=11%  Similarity=0.009  Sum_probs=209.6

Q ss_pred             hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh------hhhhhhHHHHHHHHhcC-CccchhHHHHhHhhhhcCCC
Q 009632           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE------SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSA  156 (530)
Q Consensus        84 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~~-~~~~~r~~~~~~l~~l~~~~  156 (530)
                      .+.+.+.+..+..+++..-...|++.+..++.....      +..+..+.|++.....+ -.+.....=..++..+....
T Consensus       506 l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~  585 (997)
T 1vsy_5          506 MSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVV  585 (997)
T ss_dssp             GGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCC
Confidence            345556777888888888888899999998775432      34667899999888884 34443332222222222333


Q ss_pred             ChHHHHHHHHHHHh----hc-CCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 009632          157 PDILKTELRSIYTQ----LC-QDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (530)
Q Consensus       157 ~~~~~~~l~~~l~~----l~-~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~  230 (530)
                      ++.....+++.+..    +. ++.+.-....-+..|..+....+- -.....++..+.  +.++...||+.....+..+.
T Consensus       586 DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~  663 (997)
T 1vsy_5          586 DLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLV  663 (997)
T ss_dssp             CGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHH
T ss_pred             ChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Confidence            44444556665522    11 111111111112222222221111 001234444444  66677778887777776665


Q ss_pred             hhcCch----------------------------hhhhccHHHHHHhc---C---C--CCHHH---HHHHHHHHHH-HHH
Q 009632          231 KLLEPQ----------------------------DCVAHILPVIVNFS---Q---D--KSWRV---RYMVANQLYE-LCE  270 (530)
Q Consensus       231 ~~~~~~----------------------------~~~~~~~~~l~~~~---~---d--~~~~v---r~~~~~~l~~-l~~  270 (530)
                      ...-..                            .+.+.+...+..+-   .   +  +....   .....+++-. +..
T Consensus       664 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~  743 (997)
T 1vsy_5          664 QNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKE  743 (997)
T ss_dssp             HTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHH
T ss_pred             HhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHH
Confidence            543100                            00000111111110   0   0  00000   1111222221 112


Q ss_pred             HhCCc-------ccccchHHHHHHhcCCCcH-HHHHH-HHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-CCcHHHHHHHH
Q 009632          271 AVGPE-------PTRMDLVPAYVRLLRDNEA-EVRIA-AAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALA  340 (530)
Q Consensus       271 ~~~~~-------~~~~~l~~~l~~~l~d~~~-~vr~~-a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~  340 (530)
                      .++..       .....++|.++.+.++++. +.... +..++..++...-.....+.++..+.+... +++| .|..++
T Consensus       744 ~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L  822 (997)
T 1vsy_5          744 MARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQL  822 (997)
T ss_dssp             HSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHH
T ss_pred             HhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHH
Confidence            22211       0112266666666666654 55554 444555554433333344566667766666 6899 999998


Q ss_pred             HHHHhhcc----ccCHHHHHHhHHHHHHHhhcCCC-hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC-------
Q 009632          341 SVIMGMAP----LLGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-------  408 (530)
Q Consensus       341 ~~l~~l~~----~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-------  408 (530)
                      ..+..+.-    .+..+ ....+...+..+|.|+. .+||+.|..+|+.+++..+.....+.++..+.+.+..       
T Consensus       823 ~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~  901 (997)
T 1vsy_5          823 AFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKE  901 (997)
T ss_dssp             HHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHH
T ss_pred             HHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccc
Confidence            88665431    12222 23578899999999999 9999999999999988762312122344444333311       


Q ss_pred             -----CChHHHHHHHHHHHHHHhhhCh----hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH
Q 009632          409 -----RHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  472 (530)
Q Consensus       409 -----~~~~~R~~~~~~l~~l~~~~~~----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~  472 (530)
                           ++-..|.+++-.|+.+...++=    ..+.+.++..+-....|+.+ |+..+=++++.+-+.....|.
T Consensus       902 ~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~W~  973 (997)
T 1vsy_5          902 RQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADTWK  973 (997)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTTHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchhHH
Confidence                 1125788899999988887652    34555666666666777655 899999999999888877764

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.22  E-value=0.00024  Score=66.47  Aligned_cols=258  Identities=16%  Similarity=0.137  Sum_probs=127.9

Q ss_pred             ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCH
Q 009632          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSW  255 (530)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~  255 (530)
                      +...++-|++.++.+.+.++.-  .+..++.+..++.|++..||..|++.|..+++.    .+...+...|.++++..++
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~  114 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS  114 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred             CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence            4666666666666666665542  244556666666776666777777666666654    2355566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHhhhhHhHhHhccCC
Q 009632          256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDS  331 (530)
Q Consensus       256 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~d~  331 (530)
                      .-+..+-++|..+...-.    ...+...+.++.. .++.+|..+++-|..-...++.+    .....+...+.+.++|-
T Consensus       115 ~E~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV  189 (507)
T 3u0r_A          115 AEFNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV  189 (507)
T ss_dssp             HHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence            555555555555554311    1122333333333 23566766666655444433322    22334444555555554


Q ss_pred             cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc-----C-CChHH----HHHHHHhhHHhhhhhchhH----HHhh
Q 009632          332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-----D-EFPDV----RLNIISKLDQVNQVIGIDL----LSQS  397 (530)
Q Consensus       332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d-~~~~v----r~~a~~~l~~l~~~~~~~~----~~~~  397 (530)
                      ...-=..+...+..+ +.++...-.+.+++++.....     + .+.+.    ..++-.++.-+........    +.+.
T Consensus       190 T~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k  268 (507)
T 3u0r_A          190 TGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ  268 (507)
T ss_dssp             CHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence            332212222222222 111212223455555555422     1 12222    2222333333333333222    2345


Q ss_pred             HHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHh
Q 009632          398 LLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (530)
Q Consensus       398 l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l  445 (530)
                      ++|.+..+... +....+...+..+..++...|........+|.+...|
T Consensus       269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L  317 (507)
T 3u0r_A          269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL  317 (507)
T ss_dssp             TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred             hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence            66655444322 1223677889999999999884444444555555544

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.13  E-value=0.00016  Score=67.63  Aligned_cols=256  Identities=15%  Similarity=0.110  Sum_probs=145.9

Q ss_pred             ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchh
Q 009632          138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS  217 (530)
Q Consensus       138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~  217 (530)
                      +...+..|++.|...++.++ +..+.-+..++.+|+|.+..||..|+..|..+++.    .+.+.+.+.|.+++..+++.
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~  115 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSA  115 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHH
T ss_pred             CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchH
Confidence            34566677777777776654 34556677788888888888888888888888765    44677888888888877776


Q ss_pred             HHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhcCCCc
Q 009632          218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNE  293 (530)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~  293 (530)
                      -+...-.+|..+.+.-++..+    -..+.++.+ .+..+|.-+.+.|..-...++.+..    ...+...+.+.+.|-.
T Consensus       116 E~~~V~~sL~sllk~Dpk~tl----~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT  190 (507)
T 3u0r_A          116 EFNLVNNALLSIFKMDAKGTL----GGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT  190 (507)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHH----HHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHhcChHHHH----HHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence            666677777777665443321    112222222 3567888877777665555554432    2345566666666543


Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-----C-CcH----HHHHHHHHHHHhhccccCHHHHHHhHHHHH
Q 009632          294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-----D-SSQ----HVRSALASVIMGMAPLLGKDATIEQLLPIF  363 (530)
Q Consensus       294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-----d-~~~----~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  363 (530)
                      .+==.-.+..|..+ +..+...-.+.+++.+.+.+.     + .+.    +....+-.++..++.......|...+...+
T Consensus       191 ~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kI  269 (507)
T 3u0r_A          191 GEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQV  269 (507)
T ss_dssp             HHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhh
Confidence            21111111111111 111111223455666654422     1 122    333444445555555555555555555555


Q ss_pred             HHhhcCCCh-----HHHHHHHHhhHHhhhhhchhHHHhhHHHHHHH
Q 009632          364 LSLLKDEFP-----DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  404 (530)
Q Consensus       364 ~~~l~d~~~-----~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  404 (530)
                      +..+++-..     ..+...++.++.++...|........++.+.+
T Consensus       270 lP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~  315 (507)
T 3u0r_A          270 LPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFD  315 (507)
T ss_dssp             GGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHH
T ss_pred             ccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHH
Confidence            555554333     37889999999999888832222344444443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.12  E-value=0.005  Score=63.25  Aligned_cols=86  Identities=14%  Similarity=0.139  Sum_probs=61.6

Q ss_pred             hhccccccccccCCchHHHHHHHHHHhcccccCCCccch------hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh
Q 009632           46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHA------HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE  119 (530)
Q Consensus        46 ~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~------~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~  119 (530)
                      .+.++|.+..+.++++..|..++.++++++.  + +...      ..+.+++..++.|++..||..|+.+|++++..-+.
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~--~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ--D-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT--S-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc--C-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            3478888877888899999999999998875  2 2221      23445677888899999999999999999877666


Q ss_pred             hhhhhh----HHHHHHHHh
Q 009632          120 SDLVDW----YIPLVKRLA  134 (530)
Q Consensus       120 ~~~~~~----l~~~l~~l~  134 (530)
                      +.....    +++.+..+.
T Consensus       110 d~~~~l~~~~il~~L~~~l  128 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAA  128 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHcChHHHHHHHH
Confidence            555442    444444443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.06  E-value=0.0051  Score=60.59  Aligned_cols=322  Identities=13%  Similarity=0.093  Sum_probs=164.4

Q ss_pred             hhcchhHH-HhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHH
Q 009632           84 AHVLLPPL-ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT  162 (530)
Q Consensus        84 ~~~l~~~l-~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~  162 (530)
                      ....++.| .++.+..-.+=|+.|+.+|..+++..+.......+.+++..+-+|..+                  .+..+
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D------------------~e~v~   80 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSD------------------SEIIG   80 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTC------------------HHHHH
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccccc------------------HHHHH
Confidence            33444433 444555667778888888888888776654444455555555554321                  11122


Q ss_pred             HHHHHHHhhc-CCCChhH-H--HHHHHHHHH-HHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh
Q 009632          163 ELRSIYTQLC-QDDMPMV-R--RSAASNLGK-FAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD  237 (530)
Q Consensus       163 ~l~~~l~~l~-~d~~~~v-R--~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~  237 (530)
                      .+++.+..++ .+.++.- +  .....-++. ++..+-   -.++-++.+..+++.++..+|..+++.|..++..-+...
T Consensus        81 ~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~---~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~  157 (651)
T 3grl_A           81 YALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFI---KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQV  157 (651)
T ss_dssp             HHHHHHHHHHCCC--------------CHHHHHHHHHH---HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHH---cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHH
Confidence            2222222211 1111000 0  000000110 000000   013455666777777777777777777777776554311


Q ss_pred             ---h--hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCc----HHHHHHHHHHHH
Q 009632          238 ---C--VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNE----AEVRIAAAGKVT  305 (530)
Q Consensus       238 ---~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~  305 (530)
                         +  .+.-++.+..+++|+...+|..+...|..+...-..   -..-+..++.++.++.++.    ..|..-++..+.
T Consensus       158 Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~  237 (651)
T 3grl_A          158 QQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQ  237 (651)
T ss_dssp             HHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence               1  124566677777777777777777777666643110   0112234555555555433    366677777777


Q ss_pred             HHHHhhC--HHHHH-hhhhHhHhHhccC----CcHH---HH--HHHHHHHHhhccccCH---------HHHHHhHHHHHH
Q 009632          306 KFCRILN--PELAI-QHILPCVKELSSD----SSQH---VR--SALASVIMGMAPLLGK---------DATIEQLLPIFL  364 (530)
Q Consensus       306 ~~~~~~~--~~~~~-~~l~~~l~~~~~d----~~~~---vr--~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~  364 (530)
                      .+.+.=.  ...+. ...+|.+..+++.    ..|.   ++  ..+...+..+...-+.         ..+...+++.+.
T Consensus       238 nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll  317 (651)
T 3grl_A          238 NLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLC  317 (651)
T ss_dssp             HHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHH
Confidence            7765421  11221 2345555554432    2342   22  1244555555543221         112334566677


Q ss_pred             HhhcCC--ChHHHHHHHHhhHHhhhhhchh--HHH----------hhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHh
Q 009632          365 SLLKDE--FPDVRLNIISKLDQVNQVIGID--LLS----------QSLLPAIVELAEDR-HWRVRLAIIEYIPLLAS  426 (530)
Q Consensus       365 ~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~----------~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~  426 (530)
                      +++-..  ...+|..|+.+++.++......  .+.          ..++..+..+..+. ...+|.+++.++.....
T Consensus       318 ~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          318 TILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence            776544  5679999999999987543211  111          23444455555544 58899999999987753

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.00  E-value=0.0046  Score=60.92  Aligned_cols=325  Identities=14%  Similarity=0.158  Sum_probs=185.8

Q ss_pred             HHHHHHHHHh-hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHhhhcCchh
Q 009632          161 KTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQD  237 (530)
Q Consensus       161 ~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~~  237 (530)
                      ..+-++.+.. +-+..-.+=|+.|+..|..+++..+.+ +...-++.+...+.++  +.++-..++++|..+...-+.+.
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~   97 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE   97 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence            3444444443 444566778999999999998765443 3344456666655543  44566667777766543222111


Q ss_pred             hhhccHHHHHHhcCCCCHHHHHHHHHHHH-HHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--
Q 009632          238 CVAHILPVIVNFSQDKSWRVRYMVANQLY-ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--  314 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--  314 (530)
                      - ..           .+..........+. .+..       ...-++.++.+++.++..+|..+++.|..++..-+..  
T Consensus        98 ~-~~-----------~~~~~~~~~~~~~~d~f~~-------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q  158 (651)
T 3grl_A           98 V-EE-----------NSTRQSEDLGSQFTEIFIK-------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ  158 (651)
T ss_dssp             ----------------------CHHHHHHHHHHH-------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             c-cc-----------cccccchHHHHHHHHHHHc-------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH
Confidence            0 00           00000000111111 1111       2456888999999999999999999999998765442  


Q ss_pred             -HH--HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCCh----HHHHHHHHhhHH
Q 009632          315 -LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQ  384 (530)
Q Consensus       315 -~~--~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~  384 (530)
                       .+  .+.-++.+..++.|+..-+|..++-.+..+...-..   -...+..++.++.++..+..    .|-..++..+..
T Consensus       159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n  238 (651)
T 3grl_A          159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN  238 (651)
T ss_dssp             HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence             11  235678888999999999999999998888764321   01122345667777765443    556666677777


Q ss_pred             hhhhhchh--HHH-hhHHHHHHHHhcCC----ChHHHH--H---HHHHHHHHHhhhCh---------hhHHHHHHHHHHH
Q 009632          385 VNQVIGID--LLS-QSLLPAIVELAEDR----HWRVRL--A---IIEYIPLLASQLGV---------GFFDDKLGALCMQ  443 (530)
Q Consensus       385 l~~~~~~~--~~~-~~l~~~l~~~~~~~----~~~~R~--~---~~~~l~~l~~~~~~---------~~~~~~~~~~l~~  443 (530)
                      +.+.-..+  .+. ...+|.+..+++.+    .|.-+.  .   ++.++..+...-+.         ..+...+++.+.+
T Consensus       239 LLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~  318 (651)
T 3grl_A          239 LLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCT  318 (651)
T ss_dssp             HHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHH
Confidence            76543211  121 23445555554422    343221  1   34444444332221         1123346677777


Q ss_pred             HhcCC--cHHHHHHHHHHHHHHHHHhChh---HHh---------hhhHHHHHhhccC-CChHHHHHHHHHHHHHhhh
Q 009632          444 WLQDK--VYSIRDAAANNLKRLAEEFGPE---WAM---------QHITPQVLEMINN-PHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       444 ~l~d~--~~~Vr~~a~~~l~~l~~~~~~~---~~~---------~~i~~~l~~~~~d-~~~~vr~~a~~~l~~i~~~  505 (530)
                      ++..+  ...||..|+.+++.+.+.....   +..         ..++..+..+.++ ...+.|.+++.++..+...
T Consensus       319 ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~  395 (651)
T 3grl_A          319 ILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK  395 (651)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence            76544  4679999999999987643211   111         1234445555655 4688999999999988753

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.91  E-value=0.00021  Score=61.77  Aligned_cols=148  Identities=11%  Similarity=0.066  Sum_probs=96.5

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--H-HHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhC-hhhH
Q 009632          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--L-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG-VGFF  433 (530)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~-~~~~  433 (530)
                      .+|.+..+|+.++..++..|+.+|..+...-...  . ....-+|.|.+++. .+++.++..++.+|..++..-. +..+
T Consensus        53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i  132 (233)
T 3tt9_A           53 GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM  132 (233)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHH
Confidence            4577888888888888888888888876421111  1 12356788888886 5688999999988888876433 2223


Q ss_pred             HHHHHHHHHHHhc-------C---------CcHHHHHHHHHHHHHHHHHh--ChhHHh--hhhHHHHHhhcc------CC
Q 009632          434 DDKLGALCMQWLQ-------D---------KVYSIRDAAANNLKRLAEEF--GPEWAM--QHITPQVLEMIN------NP  487 (530)
Q Consensus       434 ~~~~~~~l~~~l~-------d---------~~~~Vr~~a~~~l~~l~~~~--~~~~~~--~~i~~~l~~~~~------d~  487 (530)
                      ...-+|.+..++.       +         .+..|+..|..+|..+...-  ......  .-+++.|..+++      ++
T Consensus       133 ~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~  212 (233)
T 3tt9_A          133 ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQP  212 (233)
T ss_dssp             HHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCT
T ss_pred             HhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccc
Confidence            3344565554431       1         25689999999999886531  111111  346677776643      24


Q ss_pred             ChHHHHHHHHHHHHHhhhc
Q 009632          488 HYLYRMTILRAISLLAPVM  506 (530)
Q Consensus       488 ~~~vr~~a~~~l~~i~~~~  506 (530)
                      +...+++++.++.++.-.+
T Consensus       213 ~~k~~En~v~~L~nLs~~~  231 (233)
T 3tt9_A          213 DDKATENCVCILHNLSYQL  231 (233)
T ss_dssp             TCHHHHHHHHHHHHHCCCC
T ss_pred             hhHHHHHHHHHHHHHHhhh
Confidence            6678899999999886543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.86  E-value=0.00041  Score=59.97  Aligned_cols=185  Identities=12%  Similarity=0.117  Sum_probs=109.3

Q ss_pred             cHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HH-
Q 009632          242 ILPVIVNFSQDKSW--RVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PE-  314 (530)
Q Consensus       242 ~~~~l~~~~~d~~~--~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-~~-  314 (530)
                      -+|.+.++++++++  .++..++..+..++..-.   ........+|.++++|..++++++..|+.+|..++..-. .. 
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            45556666665554  666666666666554311   111223457888888888888888888888888875211 11 


Q ss_pred             -HHHhhhhHhHhHhcc-CCcHHHHHHHHHHHHhhccccC-HHHHHHhHHHHHHHhhc-------C---------CChHHH
Q 009632          315 -LAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLLK-------D---------EFPDVR  375 (530)
Q Consensus       315 -~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~-------d---------~~~~vr  375 (530)
                       ......+|.+.+++. ..++.++..++..+..++..-. +......-+|.+..++.       +         .+..|+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~  168 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF  168 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence             222345777777776 4678888888877777764322 23333444565555432       1         256888


Q ss_pred             HHHHHhhHHhhhhh--chhHHH--hhHHHHHHHHhcC------CChHHHHHHHHHHHHHHh
Q 009632          376 LNIISKLDQVNQVI--GIDLLS--QSLLPAIVELAED------RHWRVRLAIIEYIPLLAS  426 (530)
Q Consensus       376 ~~a~~~l~~l~~~~--~~~~~~--~~l~~~l~~~~~~------~~~~~R~~~~~~l~~l~~  426 (530)
                      ..|..+|.++...-  +...+.  ..+++.|+.+++.      .+...++.++.+|..++.
T Consensus       169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            88888888876421  111221  2356666555432      245677777777777654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.72  E-value=0.02  Score=58.77  Aligned_cols=86  Identities=19%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhh----hhccc-ccccc-ccCCchHHHHHHHHHHhcccccCCCccc
Q 009632           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT----RKELI-PFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (530)
Q Consensus        10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~----~~~l~-~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~   83 (530)
                      .|..+++.|+|+|+..|..|+.+|..++.  +++..    .+.++ +.+.. +.|++.+||.+++.+|++++..-| .+.
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g-~d~  111 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE-ADF  111 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC-HHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC-chH
Confidence            45678999999999999999999999975  33321    22344 44556 789999999999999999977533 444


Q ss_pred             hhc-----chhHHHhhhccc
Q 009632           84 AHV-----LLPPLETLCTVE   98 (530)
Q Consensus        84 ~~~-----l~~~l~~l~~d~   98 (530)
                      ...     +++.|..++...
T Consensus       112 ~~~l~~~~il~~L~~~l~~~  131 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAV  131 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhh
Confidence            443     455555555433

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=97.15  E-value=0.057  Score=47.12  Aligned_cols=129  Identities=14%  Similarity=0.213  Sum_probs=92.9

Q ss_pred             HHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHH
Q 009632          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR  453 (530)
Q Consensus       374 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr  453 (530)
                      .+...+....+++-.-.+ .+.+++++.+..+..+++..+|...+.++...+..  ........++.+..++.|+++.|.
T Consensus        31 ~kl~~L~qa~el~~~~dp-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~  107 (257)
T 3gs3_A           31 TKCELLAKVQETVLGSCA-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVI  107 (257)
T ss_dssp             HHHHHHHHHHHHHTTTTG-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHccCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence            444444444443332222 24577888888888888899999999999887743  344567788889999999999999


Q ss_pred             HHHHHHHHHHHHHh-------C-------hhHHh-hhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          454 DAAANNLKRLAEEF-------G-------PEWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       454 ~~a~~~l~~l~~~~-------~-------~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      +.++.+.+.++...       +       ..|.. ..+...+.+.....+..+|..+++++..++..
T Consensus       108 K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~  174 (257)
T 3gs3_A          108 KRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL  174 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence            99999988887642       1       11221 45566677778888999999999999998743

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.07  E-value=0.036  Score=59.79  Aligned_cols=246  Identities=10%  Similarity=-0.002  Sum_probs=132.7

Q ss_pred             hcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632          152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (530)
Q Consensus       152 l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~  231 (530)
                      +...++.+....+.+.+..     .+..|.....+++....        ...+..+.+++..++-...+ |...+.....
T Consensus       319 ~lR~~~~e~L~~l~~~~~~-----~~~~r~~~lDal~~aGT--------~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~  384 (1056)
T 1lsh_A          319 FLRNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMAT--------SEALLFLKRTLASEQLTSAE-ATQIVASTLS  384 (1056)
T ss_dssp             HHTTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHTTCSCHHH-HHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHhc-----cHHHHHHHHHHhHhcCC--------HHHHHHHHHHHHcCCCCHHH-HHHHHHHhhc
Confidence            4455555544444444331     35667765555554332        22334444444443322222 4444443332


Q ss_pred             hcCchhhhhccHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCCc------ccccchHHHHHHhcCCCcHHHHHHHH
Q 009632          232 LLEPQDCVAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE------PTRMDLVPAYVRLLRDNEAEVRIAAA  301 (530)
Q Consensus       232 ~~~~~~~~~~~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~  301 (530)
                      ...+   ....+..+..++.+    .++.+|.++.-+++.++......      .....+...+.+.+...+.+-+..++
T Consensus       385 ~~~P---t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~L  461 (1056)
T 1lsh_A          385 NQQA---TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLAL  461 (1056)
T ss_dssp             TCCC---CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCC---CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            2222   12245555556554    46789999999999988765322      11234455555556666677788888


Q ss_pred             HHHHHHHHhhCHHHHHhhhhHhHhHh---ccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhh--cCCChHHHH
Q 009632          302 GKVTKFCRILNPELAIQHILPCVKEL---SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRL  376 (530)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~l~~~l~~~---~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~  376 (530)
                      ++|+.++.-   . ..+.+.+++...   ..+...++|..++.++..++...     ...+-+++++..  .+.+.++|.
T Consensus       462 kaLGN~g~p---~-~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRi  532 (1056)
T 1lsh_A          462 KALGNAGQP---N-SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRI  532 (1056)
T ss_dssp             HHHHHHTCG---G-GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHH
T ss_pred             HHhhccCCh---h-HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHH
Confidence            888888642   1 112333333221   12335689999999888887432     223445566666  446789999


Q ss_pred             HHHHhhHHhhhhhchhHHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhCh
Q 009632          377 NIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV  430 (530)
Q Consensus       377 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~  430 (530)
                      +|+..+-...   .+    ...+..+...+ .+++.+++.-....+..+++.-.+
T Consensus       533 aA~~~Lm~t~---P~----~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          533 RSCIVFFESK---PS----VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHHTC---CC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHC---cC----HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            9987764321   11    12333333333 346677777776666666665443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.94  E-value=0.027  Score=60.76  Aligned_cols=157  Identities=10%  Similarity=0.037  Sum_probs=103.0

Q ss_pred             CcHHHHHHHHHHHHhhccc-------cCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632          331 SSQHVRSALASVIMGMAPL-------LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (530)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~-------~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  403 (530)
                      .++.+|..++-+++.++..       +. ....+.+...+...+...+..-+..++.+|+++..-        ..++.+.
T Consensus       407 ~~~~l~~ta~La~gslV~k~c~~~~~c~-~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--------~~l~~l~  477 (1056)
T 1lsh_A          407 NRPILRKTAVLGYGSLVFRYCANTVSCP-DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--------NSIKKIQ  477 (1056)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCC-GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--------GGHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--------hHHHHHH
Confidence            4566777777666665432       22 223455666677777777888889999999987652        3455555


Q ss_pred             HHhc-------CCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHhChhHHhh
Q 009632          404 ELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWAMQ  474 (530)
Q Consensus       404 ~~~~-------~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~  474 (530)
                      +++.       +...++|.+|+.++..++.. .    ...+.+.++...  .+...+||.+|+..|-   .....    .
T Consensus       478 ~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~----p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm---~t~P~----~  545 (1056)
T 1lsh_A          478 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-D----PRKVQEIVLPIFLNVAIKSELRIRSCIVFF---ESKPS----V  545 (1056)
T ss_dssp             TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-C----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHH---HTCCC----H
T ss_pred             HhhcCccccccccchHHHHHHHHHHHHhhhh-c----hHHHHHHHHHHhcCCCCChHHHHHHHHHHH---HHCcC----H
Confidence            5543       22457899999999888642 1    223445555555  4567899999999863   22221    2


Q ss_pred             hhHHHHHhh-ccCCChHHHHHHHHHHHHHhhhcCh
Q 009632          475 HITPQVLEM-INNPHYLYRMTILRAISLLAPVMGS  508 (530)
Q Consensus       475 ~i~~~l~~~-~~d~~~~vr~~a~~~l~~i~~~~~~  508 (530)
                      ..+..+... -.+++..|+......|..+.+.-.+
T Consensus       546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            234444443 4568999999999999999887654

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.94  E-value=0.18  Score=44.06  Aligned_cols=69  Identities=19%  Similarity=0.251  Sum_probs=38.9

Q ss_pred             hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC  308 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  308 (530)
                      +.+.+++.+..+..|.+..+|+.++..++..+..  +.......++.+..+++|+++.|.+.++.+...+.
T Consensus        50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY  118 (257)
T 3gs3_A           50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIY  118 (257)
T ss_dssp             GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4455555555555555666666666666555532  12223445566666666666666666666665554

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=96.92  E-value=0.043  Score=45.34  Aligned_cols=142  Identities=11%  Similarity=0.115  Sum_probs=92.0

Q ss_pred             HHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC------CChHHHHHHHHHHHHHHhh--hChhhHHHHHHHHHHHH
Q 009632          373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW  444 (530)
Q Consensus       373 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~------~~~~~R~~~~~~l~~l~~~--~~~~~~~~~~~~~l~~~  444 (530)
                      ..|..|+..+..=   -|    .+.++|.+..+..+      .++..-...++....+...  +.-+.+...++|.++.+
T Consensus        23 ~~r~~aL~sL~~D---~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEKE---SG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHHC---SS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---CC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            4577776666542   22    25677776655433      2455555555666655542  23455677899998887


Q ss_pred             hcC---CcHHHHHHHHHHHHHHHHHhChh--HHhhhhHHHHHhhccCC--ChHHHHHHHHHHHHHhhhcChHHHHhhHHH
Q 009632          445 LQD---KVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLP  517 (530)
Q Consensus       445 l~d---~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p  517 (530)
                      +-.   ....+|..|++.++.++..+|..  ..+..+...+.+.+.||  +...+-+|+..+..    +|.+.+...++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhc
Confidence            632   11279999999999999999864  33467777777778776  44556666666554    455666667778


Q ss_pred             HHHhhccC
Q 009632          518 VVINASKD  525 (530)
Q Consensus       518 ~l~~~l~D  525 (530)
                      .+..+.++
T Consensus       172 ~l~~~~~~  179 (196)
T 4atg_A          172 HAEEYKRT  179 (196)
T ss_dssp             HHHHHHHH
T ss_pred             CHHHHHHH
Confidence            88776543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.79  E-value=0.086  Score=48.86  Aligned_cols=129  Identities=15%  Similarity=0.165  Sum_probs=96.2

Q ss_pred             HHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHH
Q 009632          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR  453 (530)
Q Consensus       374 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr  453 (530)
                      .+...+....+++-.-.+ .+.+.+++.+..+..+++..+|...+.++...+..  ...+...+++.+..++.|.++.|.
T Consensus        41 ~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~  117 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVV  117 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence            455555555554332222 34578999999999999999999999999988753  333457789999999999999999


Q ss_pred             HHHHHHHHHHHHHh--------C------hhHHh-hhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          454 DAAANNLKRLAEEF--------G------PEWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       454 ~~a~~~l~~l~~~~--------~------~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      +.++.+.+.++...        +      ..|.. ..+...+.+.....+..+|..+++++..++..
T Consensus       118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~  184 (386)
T 3o2t_A          118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT  184 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            99999998887432        1      12322 45566677778888999999999999998753

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.24  E-value=0.74  Score=42.66  Aligned_cols=69  Identities=28%  Similarity=0.346  Sum_probs=36.6

Q ss_pred             hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC  308 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  308 (530)
                      ..+.++|.+..+..|.+..+|+.++..|+..+..  +......+++.+..+++|+++.|.+.++.+...+.
T Consensus        60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A           60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3445555555555555555666665555555432  11112345555555566666666666555555443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.92  E-value=2  Score=38.59  Aligned_cols=106  Identities=12%  Similarity=0.080  Sum_probs=78.8

Q ss_pred             HHHHhhcCCChHHHHHHHHhhHHhhhhh---chhHH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH-
Q 009632          362 IFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-  434 (530)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~-  434 (530)
                      -++..++.++.+|-..|..++..+....   ..+.+   .+.+.....+++.++||-+|..++..|+.+.---....+. 
T Consensus       168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~  247 (341)
T 1upk_A          168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT  247 (341)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence            3556788888999999988888775431   11221   1456777778899999999999999999886422111111 


Q ss_pred             -----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          435 -----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       435 -----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                           ..-+..++.+|.|+..+++..|..++..++..-
T Consensus       248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence                 346788999999999999999999999887653

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=94.67  E-value=0.71  Score=38.11  Aligned_cols=90  Identities=13%  Similarity=0.163  Sum_probs=65.8

Q ss_pred             HHHHHhHHHHHHHhhcC---CChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHH
Q 009632          353 DATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLA  425 (530)
Q Consensus       353 ~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~  425 (530)
                      +.+...++|.++.++-.   ....+|..|+..++.++..+|.  ..+.+.+...+.+.+.|+  +...+..|+..+..+ 
T Consensus        82 epYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l-  160 (196)
T 4atg_A           82 DPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL-  160 (196)
T ss_dssp             GGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh-
Confidence            56677888888887632   1238999999999999999886  345567777777777665  567777787777665 


Q ss_pred             hhhChhhHHHHHHHHHHHHhc
Q 009632          426 SQLGVGFFDDKLGALCMQWLQ  446 (530)
Q Consensus       426 ~~~~~~~~~~~~~~~l~~~l~  446 (530)
                         |.+.+...++|.+..+.+
T Consensus       161 ---G~~~vr~~llP~l~~~~~  178 (196)
T 4atg_A          161 ---SKNVVNTVIREHAEEYKR  178 (196)
T ss_dssp             ---CHHHHHTHHHHHHHHHHH
T ss_pred             ---HHHHHHHhhhcCHHHHHH
Confidence               666666667788766664

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=93.59  E-value=1.8  Score=34.05  Aligned_cols=84  Identities=10%  Similarity=0.029  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHhhccC------CChHHHHHHHHHHHHHhh
Q 009632          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLEMINN------PHYLYRMTILRAISLLAP  504 (530)
Q Consensus       435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d------~~~~vr~~a~~~l~~i~~  504 (530)
                      ...+..+.+-+..+++.|...|+..+..+++++|..+..    .+++..|.+++.+      .+..||..++..+..+..
T Consensus        47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            446667778888999999999999999999999987643    5678888887764      477899999999999998


Q ss_pred             hcChHHHHhhHHHH
Q 009632          505 VMGSEITCSRLLPV  518 (530)
Q Consensus       505 ~~~~~~~~~~~~p~  518 (530)
                      .++.+.-....+..
T Consensus       127 ~f~~~p~i~~~Y~~  140 (149)
T 3g2s_A          127 GLPEEVKIAEAYQM  140 (149)
T ss_dssp             HCTTCHHHHHHHHH
T ss_pred             HhCCCchHHHHHHH
Confidence            88654333333333

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=93.47  E-value=0.93  Score=38.67  Aligned_cols=130  Identities=10%  Similarity=-0.025  Sum_probs=86.5

Q ss_pred             HHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 009632          128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI  206 (530)
Q Consensus       128 ~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~  206 (530)
                      .++..+.+++..+.|..++.+++.......+    +-++.+...+. -++|.+-...+.+++.++..-     ...+.+.
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~  128 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTI  128 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHH
Confidence            4556666667777888888888766544443    33444444443 567888777776677766532     1235677


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632          207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (530)
Q Consensus       207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  270 (530)
                      +.+.+.|++.-+|..|+..+-.   . ........+++.+..+..|++.-||.+++..|..++.
T Consensus       129 i~~W~~s~~~w~rR~ai~~~l~---~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k  188 (220)
T 2b6c_A          129 FALFYGAENFWNRRVALNLQLM---L-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK  188 (220)
T ss_dssp             HHHHTTCSSHHHHHHHHHTTTT---C-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHH---H-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence            8888999988888887775521   1 2223345567777778888888888888888877764

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=93.41  E-value=1  Score=35.10  Aligned_cols=98  Identities=11%  Similarity=0.082  Sum_probs=70.5

Q ss_pred             hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL  481 (530)
Q Consensus       406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~  481 (530)
                      ..+++|..-...+..+..     ++ .-....+..+.+-+..+++.+...|+..+..+++++|..+..    .+++..+.
T Consensus        18 l~~~dw~~ileicD~I~~-----~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~   91 (140)
T 3ldz_A           18 NTAEDWGLILDICDKVGQ-----SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS   91 (140)
T ss_dssp             SSSCCHHHHHHHHHHHTT-----ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHC-----CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence            345677644444433321     11 123456677778888899999999999999999999987653    55777777


Q ss_pred             hhccCCChHHHHHHHHHHHHHhhhcChH
Q 009632          482 EMINNPHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       482 ~~~~d~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      ++++..+..||..++..+..+...++.+
T Consensus        92 ~l~~~~~~~Vk~kil~li~~W~~~f~~~  119 (140)
T 3ldz_A           92 NVLNKGHPKVCEKLKALMVEWTDEFKND  119 (140)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            7776778899999999999998877654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=92.81  E-value=2.8  Score=32.88  Aligned_cols=117  Identities=7%  Similarity=-0.007  Sum_probs=77.4

Q ss_pred             hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL  481 (530)
Q Consensus       406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~  481 (530)
                      ..+++|..-...+..+..=    +  .-....+..+.+-+..+++.|...|+..+..+++++|..+..    ..++..|.
T Consensus        14 l~~~dw~~~leicD~I~~~----~--~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~   87 (148)
T 1mhq_A           14 MSEQDWSAIQNFCEQVNTD----P--NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI   87 (148)
T ss_dssp             CSSCCHHHHHHHHHHHHHS----S--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHcC----C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            3456786544444444321    1  113345667777788999999999999999999999987643    66788888


Q ss_pred             hhccC------CChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHh-hccCCCC
Q 009632          482 EMINN------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN-ASKDRYL  528 (530)
Q Consensus       482 ~~~~d------~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~-~l~D~~~  528 (530)
                      +++.+      .+..||..++..+..+...++...-....+..|.. ....|-|
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk~~G~~Fp~~  141 (148)
T 1mhq_A           88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLKKQGIIKQDP  141 (148)
T ss_dssp             HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSCSCC
T ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHcCCCCCCC
Confidence            87764      36789999999999998887654333344443333 3333333

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=92.19  E-value=5.1  Score=34.35  Aligned_cols=159  Identities=9%  Similarity=-0.059  Sum_probs=90.5

Q ss_pred             HHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHH-HHHHHHHhhhcchhhHHHHHHH
Q 009632          128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA-SNLGKFAATVEPAHLKTDIMSI  206 (530)
Q Consensus       128 ~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~-~~l~~l~~~~~~~~~~~~l~~~  206 (530)
                      .++..+-+++....|..|+..+....+...++..+.+-..+ .  ..++|.+-...+ ..++.+...-+.     ...+.
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l-~--~~~nWd~~D~~a~~~~g~~~~~~p~-----~~~~~  135 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELI-V--TKSWWDSVDSIVPTFLGDIFLKHPE-----LISAY  135 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHH-T--SSCCHHHHHHHTTTHHHHHHHHCGG-----GGGGT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-c--cCCChHHHHHhhHHHHHHHHHHCHH-----HHHHH
Confidence            34555556666667777777776554444444333332222 1  356787766553 455666554211     24456


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 009632          207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV  286 (530)
Q Consensus       207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  286 (530)
                      +...+.|++.-+|..|+..+-..   . .......+++.+...+.|++.-|+.+++..|..++..     ..+.+.+++.
T Consensus       136 l~~W~~s~~~w~rR~ai~~~l~~---~-~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~  206 (232)
T 3jxy_A          136 IPKWIASDNIWLQRAAILFQLKY---K-QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQ  206 (232)
T ss_dssp             HHHHHHSSCHHHHHHHHHTTTTC---G-GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHH---H-hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHH
Confidence            66788888888887777654221   1 1112334667777788888888999888888877643     1233444444


Q ss_pred             HhcCCCcHHHHHHHHHHHH
Q 009632          287 RLLRDNEAEVRIAAAGKVT  305 (530)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~  305 (530)
                      +.  .-++..+..|++.|+
T Consensus       207 ~~--~l~~~~~r~A~k~l~  223 (232)
T 3jxy_A          207 NN--ELAPLSKREAIKHIK  223 (232)
T ss_dssp             HS--CCCHHHHHHHTTTTH
T ss_pred             HC--CCCHHHHHHHHHhcc
Confidence            43  333445555555443

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=91.75  E-value=3.2  Score=33.52  Aligned_cols=109  Identities=7%  Similarity=0.009  Sum_probs=73.8

Q ss_pred             cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE  482 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~  482 (530)
                      .+++|..-...+..+..=    .  .-....+..+.+-+..+++.|...|+..+-.+++++|..+..    ..++..|.+
T Consensus        27 ~~~Dw~~ileicD~I~~~----~--~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k  100 (171)
T 1juq_A           27 RQEDWEYIIGFCDQINKE----L--EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK  100 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHS----T--THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcC----C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence            346786544444444321    1  113345667777788899999999999999999998876543    566777777


Q ss_pred             hccC------CChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHh
Q 009632          483 MINN------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN  521 (530)
Q Consensus       483 ~~~d------~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~  521 (530)
                      ++..      .+..||..++..+..+...++........+..|+.
T Consensus       101 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk~  145 (171)
T 1juq_A          101 VVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKR  145 (171)
T ss_dssp             HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            7652      36789999999999998888755434444444443

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=91.72  E-value=2.7  Score=33.62  Aligned_cols=97  Identities=12%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE  482 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~  482 (530)
                      .+++|..-...+..+..=     . .-....+..+.+-+..+++.|...|+..+..+++++|..+..    ..++..+.+
T Consensus        29 ~~~Dw~~~leicD~I~~~-----~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~  102 (163)
T 1x5b_A           29 TTEDWSLIMDICDKVGST-----P-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA  102 (163)
T ss_dssp             SSCCHHHHHHHHHHHHHS-----S-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhCC-----C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence            456787555444444321     1 113345667777788899999999999999999999987542    556777777


Q ss_pred             hccC-CChHHHHHHHHHHHHHhhhcChH
Q 009632          483 MINN-PHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       483 ~~~d-~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      ++.. .+..||..++..+..+...++.+
T Consensus       103 l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A          103 VIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            6654 57789999999999998877654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=90.94  E-value=8.7  Score=34.58  Aligned_cols=207  Identities=9%  Similarity=0.046  Sum_probs=125.1

Q ss_pred             hhhhHhHhHhccCCcHHHHHHHHHHHHhhccc-cCH----HHH---HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 009632          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPL-LGK----DAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (530)
Q Consensus       318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-~~~----~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  389 (530)
                      +.++..+...+..-++..|..+...+..+... .|.    -.+   .+.++..+...-.+++...  .+..-|...++.-
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl--~~G~mLRecir~e  154 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHE  154 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSH
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh--HHHHHHHHHHHhH
Confidence            34455555555666777777777776665432 221    111   2345555555555443221  1111121211110


Q ss_pred             c--hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---hhhH---HHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 009632          390 G--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF---DDKLGALCMQWLQDKVYSIRDAAANNLK  461 (530)
Q Consensus       390 ~--~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~---~~~~~~~l~~~l~d~~~~Vr~~a~~~l~  461 (530)
                      .  .--+....+..+.++...++..+-..|..++..+.....   .+++   .+.++..+-+++..++.-.|..+++.||
T Consensus       155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg  234 (341)
T 1upk_A          155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  234 (341)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            0  000112233456678889999999999888887765422   2232   2457777888999999999999999999


Q ss_pred             HHHHHhChhHH------hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC-hHHH-------HhhHHHHHHhhccCC
Q 009632          462 RLAEEFGPEWA------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEIT-------CSRLLPVVINASKDR  526 (530)
Q Consensus       462 ~l~~~~~~~~~------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~-~~~~-------~~~~~p~l~~~l~D~  526 (530)
                      .+.-.-.+..+      ..+-+..++++++|++..++..|...+.-++-+-. +..+       .+.++.++..+..|+
T Consensus       235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~  313 (341)
T 1upk_A          235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  313 (341)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99854222111      14457788899999999999999999987764321 1111       566777888887776

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=90.92  E-value=3.4  Score=32.05  Aligned_cols=108  Identities=8%  Similarity=-0.044  Sum_probs=68.2

Q ss_pred             cCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhh----hhccHHHHH
Q 009632          172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIV  247 (530)
Q Consensus       172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~  247 (530)
                      +.+++|..-...|..+..     . +.-..+.+..+.+.+.+.++.+...|+..+..+.+.+|+.-.    ...++..+.
T Consensus        18 l~~~dw~~ileicD~I~~-----~-~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~   91 (140)
T 3ldz_A           18 NTAEDWGLILDICDKVGQ-----S-RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS   91 (140)
T ss_dssp             SSSCCHHHHHHHHHHHTT-----S-TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHC-----C-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence            345666544444433321     1 122345677788888888999999999999999999887311    123444444


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 009632          248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY  285 (530)
Q Consensus       248 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  285 (530)
                      .+++..++.||..+...+...+..++.+.....+...+
T Consensus        92 ~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y  129 (140)
T 3ldz_A           92 NVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMI  129 (140)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence            45545677888888888888887776654433333333

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=89.91  E-value=7.9  Score=32.80  Aligned_cols=131  Identities=8%  Similarity=-0.004  Sum_probs=66.1

Q ss_pred             HHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhChhhHHHHHHH
Q 009632          361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  439 (530)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~  439 (530)
                      .++..+...+..+.|..++..++.....+..     ..++.+..++. ..+|.+--..+.+++.+.....     ..+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHH
Confidence            3344445555666666666666554332221     22233333333 3456555544443444432211     12345


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632          440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       440 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~  505 (530)
                      .+.....|++..+|..|+.++-   .. ......+.+++.+..+..|+++-||.+..++|..+...
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l---~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQL---ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTT---TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHH---HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            5666667767666666666431   11 11112244555555566777777777777777776654

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=89.78  E-value=7.1  Score=33.42  Aligned_cols=131  Identities=11%  Similarity=0.094  Sum_probs=71.4

Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC-CCCHHHHHHHH-HHHHHHHHHhCCcccccchH
Q 009632          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVA-NQLYELCEAVGPEPTRMDLV  282 (530)
Q Consensus       205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~-~~l~~l~~~~~~~~~~~~l~  282 (530)
                      ..+.++..++..+.|-.|+..+....+.+.++     .++.+..++. .++|.+-...+ ..++.+....     ...+.
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~  133 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELIS  133 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGG
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHH
Confidence            34555666666778888887776544433332     2333444433 46677766553 4445554431     12244


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (530)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  349 (530)
                      +.+.....+++.-+|..|+..+-........    ..+.+.+...+.|++..|+.++...+..++..
T Consensus       134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~----~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~  196 (232)
T 3jxy_A          134 AYIPKWIASDNIWLQRAAILFQLKYKQKMDE----ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT  196 (232)
T ss_dssp             GTHHHHHHSSCHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHhCCCH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence            5566666666666666665543221111111    23445555666777777777777777776654

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=88.78  E-value=5.7  Score=33.83  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE  482 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~  482 (530)
                      .+++|..-...+..+..  ...|    ....+..+.+-+..+++.|...|+..|..++++.|..+..    .+++..|.+
T Consensus        22 ~~~dw~~ileicD~I~~--~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~   95 (226)
T 3zyq_A           22 LETDWESILQICDLIRQ--GDTQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD   95 (226)
T ss_dssp             SSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhC--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence            44577754444444431  1112    2445667777788899999999999999999998876543    455666666


Q ss_pred             hcc-CCChHHHHHHHHHHHHHhhhcChH
Q 009632          483 MIN-NPHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       483 ~~~-d~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      +++ ..+..||..++..+..+...+..+
T Consensus        96 l~~~~~~~~Vk~kil~li~~W~~~f~~~  123 (226)
T 3zyq_A           96 LLKRQVEVNVRNKILYLIQAWAHAFRNE  123 (226)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            554 357789999999999888877543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=87.87  E-value=6.4  Score=31.46  Aligned_cols=70  Identities=11%  Similarity=0.062  Sum_probs=36.9

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhh----HHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcC
Q 009632          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLE  234 (530)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~  234 (530)
                      ...+.+-+...++.+...|+..|..+.+++|....    ...+++.+..++.. .++.||..+++.+...+..++
T Consensus        54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~  128 (163)
T 1x5b_A           54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ  128 (163)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence            33444444556677777777777777776665221    12344444444433 334566666555555554443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=87.81  E-value=9.2  Score=32.86  Aligned_cols=128  Identities=12%  Similarity=0.087  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhhhcCc------hhhhhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhc
Q 009632          221 LAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLL  289 (530)
Q Consensus       221 ~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l  289 (530)
                      .|+..+-.++.+-.-      ..+.-++.|++....++. .+..|-+....+|.+.+.-..+..    ...++|.+++.+
T Consensus        75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim  154 (268)
T 2fv2_A           75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM  154 (268)
T ss_dssp             HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence            344455555543221      223455777776666653 367898888888888765222221    346899999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhh-CHH----------HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632          290 RDNEAEVRIAAAGKVTKFCRIL-NPE----------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (530)
Q Consensus       290 ~d~~~~vr~~a~~~l~~~~~~~-~~~----------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~  348 (530)
                      +-.+.-.+.-|..-+..+...- |-+          .+...+-..+..+.++++.|.-..++++...++.
T Consensus       155 e~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd  224 (268)
T 2fv2_A          155 ESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD  224 (268)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             hhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            8887777777777666665321 111          1112222333445566666766666666666654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=87.49  E-value=8.9  Score=30.04  Aligned_cols=74  Identities=5%  Similarity=-0.012  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH----HHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHH
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~Vr~~a~~~l~~l~~  465 (530)
                      +..+..+.+.++++++.+...|+..+..+.+.+|..|..    ..++.-+.+++.+      ....||...+..+..-..
T Consensus        47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            456667777778999999999999999999999977643    4577777777765      467899999999988887


Q ss_pred             HhCh
Q 009632          466 EFGP  469 (530)
Q Consensus       466 ~~~~  469 (530)
                      .++.
T Consensus       127 ~f~~  130 (149)
T 3g2s_A          127 GLPE  130 (149)
T ss_dssp             HCTT
T ss_pred             HhCC
Confidence            7753

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=86.44  E-value=22  Score=33.60  Aligned_cols=250  Identities=11%  Similarity=0.105  Sum_probs=137.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHH--hCC----cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-HHHhhhhH
Q 009632          251 QDKSWRVRYMVANQLYELCEA--VGP----EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-LAIQHILP  322 (530)
Q Consensus       251 ~d~~~~vr~~~~~~l~~l~~~--~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~-~~~~~l~~  322 (530)
                      .+.+|..-..+.+.+-.+...  +..    ......++-.++.++..+++.-|......+..+...+ +.. .+...+-.
T Consensus       127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n  206 (449)
T 2npp_B          127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN  206 (449)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466888888888887776643  221    2223457778888889998888888888887776543 222 11122222


Q ss_pred             hHhHhccC-CcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhcCCChHHH-HHHHHhhHHhhhhhchhHHHhh
Q 009632          323 CVKELSSD-SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVR-LNIISKLDQVNQVIGIDLLSQS  397 (530)
Q Consensus       323 ~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr-~~a~~~l~~l~~~~~~~~~~~~  397 (530)
                      .+..++.. ....--..+++.++.+...+.   ++.....+...++.+.+......= .+...++..+++.  ...+...
T Consensus       207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~  284 (449)
T 2npp_B          207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP  284 (449)
T ss_dssp             HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc--CcHhHHH
Confidence            22222221 111122355666666665543   233344444555555554432211 1111222222211  1112233


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHH---HHHHHHHHhcCCcHHHHHHHHHHHHH--HHHHhChhHH
Q 009632          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKR--LAEEFGPEWA  472 (530)
Q Consensus       398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~---~~~~l~~~l~d~~~~Vr~~a~~~l~~--l~~~~~~~~~  472 (530)
                      ++..+.+.=-..+..--...+.-+..+....++..|...   ++..+-+++..++.+|-+.|+..+..  +...+...  
T Consensus       285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n--  362 (449)
T 2npp_B          285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN--  362 (449)
T ss_dssp             HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT--
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhc--
Confidence            444444433334444556677778888888888777654   45556677889999999999987732  22222111  


Q ss_pred             hhhhHHHHHhhc-----cCCChHHHHHHHHHHHHHhh
Q 009632          473 MQHITPQVLEMI-----NNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       473 ~~~i~~~l~~~~-----~d~~~~vr~~a~~~l~~i~~  504 (530)
                      ...++|.+...+     ++=|..+|..+..++..+.+
T Consensus       363 ~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e  399 (449)
T 2npp_B          363 AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  399 (449)
T ss_dssp             HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred             hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            234566655533     22366799999999986655

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=84.27  E-value=12  Score=31.87  Aligned_cols=98  Identities=11%  Similarity=0.033  Sum_probs=61.0

Q ss_pred             CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh----hhhccHHHHHH
Q 009632          173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVN  248 (530)
Q Consensus       173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~  248 (530)
                      .+++|..-...+..+..     . +.-..+.+..+.+.+.+.++.+...|+..|..+.+..|+.-    -...++..+..
T Consensus        22 ~~~dw~~ileicD~I~~-----~-~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~   95 (226)
T 3zyq_A           22 LETDWESILQICDLIRQ-----G-DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD   95 (226)
T ss_dssp             SSCCHHHHHHHHHHHHT-----T-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence            35566554444444321     1 11234567777778888888899999999999888887621    12223344444


Q ss_pred             hcC-CCCHHHHHHHHHHHHHHHHHhCCcc
Q 009632          249 FSQ-DKSWRVRYMVANQLYELCEAVGPEP  276 (530)
Q Consensus       249 ~~~-d~~~~vr~~~~~~l~~l~~~~~~~~  276 (530)
                      +++ ..+..||..+...+...+..+..+.
T Consensus        96 l~~~~~~~~Vk~kil~li~~W~~~f~~~~  124 (226)
T 3zyq_A           96 LLKRQVEVNVRNKILYLIQAWAHAFRNEP  124 (226)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence            433 3457788888888888887776544

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=84.02  E-value=9.3  Score=30.27  Aligned_cols=61  Identities=7%  Similarity=0.083  Sum_probs=40.7

Q ss_pred             CCccchhHHHHhHhhhhcCCCChHHH-----HHHHHH-HHhhcC---CCChhHHHHHHHHHHHHHhhhcc
Q 009632          136 GEWFTARVSACGLFHIAYPSAPDILK-----TELRSI-YTQLCQ---DDMPMVRRSAASNLGKFAATVEP  196 (530)
Q Consensus       136 ~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~-l~~l~~---d~~~~vR~~a~~~l~~l~~~~~~  196 (530)
                      ..++.++..|..++..+.+.+++...     .++++. +..++.   ++...||..++..+...+..++.
T Consensus        65 ~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~  134 (157)
T 1elk_A           65 NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS  134 (157)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence            45667777788888888877776522     334444 445443   34457888888888888877654

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=83.94  E-value=12  Score=28.41  Aligned_cols=94  Identities=9%  Similarity=0.029  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhh
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH  475 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~  475 (530)
                      ..++|.|...++|.||.+...++..+...         .+.++|.+.+.+...+..=.   ..++..+...+..+ ....
T Consensus        30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~-~~~~   96 (134)
T 3ut4_A           30 EPIIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWK---YWVIKLMIPYLIYP-NKQL   96 (134)
T ss_dssp             HHHHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH-HHHH
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH-HHHH
Confidence            46788888888888888777776666543         23466666666654443322   23333344444332 2355


Q ss_pred             hHHHHHhhccCC-----ChHHHHHHHHHHHHH
Q 009632          476 ITPQVLEMINNP-----HYLYRMTILRAISLL  502 (530)
Q Consensus       476 i~~~l~~~~~d~-----~~~vr~~a~~~l~~i  502 (530)
                      +.+.+.++...+     ...+...|-+.+.++
T Consensus        97 l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~  128 (134)
T 3ut4_A           97 VKSELERLSSLEIINEDIREIVNLSKDYLHFY  128 (134)
T ss_dssp             HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence            677777766554     445666666666554

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=83.21  E-value=12  Score=28.48  Aligned_cols=100  Identities=8%  Similarity=-0.132  Sum_probs=63.4

Q ss_pred             CCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC
Q 009632          155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE  234 (530)
Q Consensus       155 ~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~  234 (530)
                      .++.+....++|.++..++|.+|.+...++..|..+.         +.++|.+.+.+..+++.-+-.   .+..+...++
T Consensus        23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~yw---il~~lv~~~~   90 (134)
T 3ut4_A           23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYW---VIKLMIPYLI   90 (134)
T ss_dssp             TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHH---HHHHHGGGCC
T ss_pred             hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHH---HHHHHHHcCC
Confidence            3466678889999999999999999999888887653         356666666666555443332   3444455555


Q ss_pred             chhhhhccHHHHHHhcCCC-----CHHHHHHHHHHHHH
Q 009632          235 PQDCVAHILPVIVNFSQDK-----SWRVRYMVANQLYE  267 (530)
Q Consensus       235 ~~~~~~~~~~~l~~~~~d~-----~~~vr~~~~~~l~~  267 (530)
                      .+ ....+.|.+.+++..+     .+.|...|-+.|..
T Consensus        91 ~~-~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~  127 (134)
T 3ut4_A           91 YP-NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHF  127 (134)
T ss_dssp             HH-HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence            43 3445667777766543     34455544444443

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=82.82  E-value=9.8  Score=29.32  Aligned_cols=101  Identities=14%  Similarity=0.075  Sum_probs=61.3

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-----hhhH
Q 009632          403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-----QHIT  477 (530)
Q Consensus       403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~i~  477 (530)
                      .+..++.+|..=...+.-|..+..... ..+...+++++.+-++++.+.|...|+++|..++...++.+..     ..++
T Consensus        17 ~~ATs~d~~~~pgylm~EIA~~T~~s~-~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~I   95 (140)
T 1vdy_A           17 DAVTSDEDKVAPVYKLEEICDLLRSSH-VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAV   95 (140)
T ss_dssp             HHTTCSCSSCCCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHH
T ss_pred             HHHhcCCCCCCcHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHH
Confidence            344555556544444444444432222 2234679999999999999999999999999988765544332     1222


Q ss_pred             HHHHhhc--cC------CChHHHHHHHHHHHHHhh
Q 009632          478 PQVLEMI--NN------PHYLYRMTILRAISLLAP  504 (530)
Q Consensus       478 ~~l~~~~--~d------~~~~vr~~a~~~l~~i~~  504 (530)
                      ..+.++-  .|      +...||..|-+++.-+..
T Consensus        96 k~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d  130 (140)
T 1vdy_A           96 RNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS  130 (140)
T ss_dssp             HTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence            2232221  12      235799999888876643

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=82.51  E-value=31  Score=32.05  Aligned_cols=253  Identities=10%  Similarity=0.078  Sum_probs=135.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHh------CCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-HH-HHhhhhH
Q 009632          251 QDKSWRVRYMVANQLYELCEAV------GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-EL-AIQHILP  322 (530)
Q Consensus       251 ~d~~~~vr~~~~~~l~~l~~~~------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~-~~~~l~~  322 (530)
                      .+.+|..-..+.+.+-.+...-      .+......++-.++.++..+++.=|...-..+..+...+.. .. +...+-.
T Consensus        94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn  173 (403)
T 3fga_B           94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN  173 (403)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            4678888888888887776541      12223345777788899999999998888888876654322 11 1112222


Q ss_pred             hHhHhccCCc-HHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhcCCChHHH-HHHHHhhHHhhhhhchhHHHhh
Q 009632          323 CVKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVR-LNIISKLDQVNQVIGIDLLSQS  397 (530)
Q Consensus       323 ~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr-~~a~~~l~~l~~~~~~~~~~~~  397 (530)
                      .+..++.... ..--..+++.++.+...+.   ++.....+...++.+-+.+...+= .+...++..+++.  ...+...
T Consensus       174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK--Dp~L~~~  251 (403)
T 3fga_B          174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP  251 (403)
T ss_dssp             HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh--CchhHHH
Confidence            2222222111 1112345566666655442   133333344445555544432211 1112222222211  1112233


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHH---HHHHHHHHhcCCcHHHHHHHHHHHHH--HHHHhCh--h
Q 009632          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKR--LAEEFGP--E  470 (530)
Q Consensus       398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~---~~~~l~~~l~d~~~~Vr~~a~~~l~~--l~~~~~~--~  470 (530)
                      ++..+.+.=-..+..--...+.-+..+....++..|...   ++..+-.++.+++.+|-+.|+..+..  +...+..  .
T Consensus       252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~  331 (403)
T 3fga_B          252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA  331 (403)
T ss_dssp             HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH
Confidence            444444433334555556677778888888887777654   44455667789999999999887632  1222111  1


Q ss_pred             HHhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHhhh
Q 009632          471 WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPV  505 (530)
Q Consensus       471 ~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~i~~~  505 (530)
                      .....+.|.+.+... +=|..+|..+..++..+.+.
T Consensus       332 ~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          332 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            112334444444332 33778999998888877553

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=81.56  E-value=19  Score=28.94  Aligned_cols=74  Identities=7%  Similarity=0.003  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH----HHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHH
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~Vr~~a~~~l~~l~~  465 (530)
                      +..+..+.+.+++++..+...|+..+..+.+.+|..+..    ..++.-+.+++..      ....||..++..+..-..
T Consensus        49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            455667777788999999999999999999998876643    4566677777753      357899999999988887


Q ss_pred             HhCh
Q 009632          466 EFGP  469 (530)
Q Consensus       466 ~~~~  469 (530)
                      .++.
T Consensus       129 ~f~~  132 (171)
T 1juq_A          129 ALPE  132 (171)
T ss_dssp             HCTT
T ss_pred             HcCC
Confidence            7754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	530
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-111
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-29
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-14
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-12
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-10
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	8e-14
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-04
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-10
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-09
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-08
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-09
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-08
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-09
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-08
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	7e-07
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	9e-09
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	9e-09
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.004
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	3e-08
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.004
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	8e-07
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.002

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  341 bits (875), Expect = e-111
 Identities = 317/529 (59%), Positives = 400/529 (75%), Gaps = 4/529 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305

Query: 305 TKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +      +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLN 529
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D   N
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVAN 534

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 2e-29
 Identities = 93/503 (18%), Positives = 189/503 (37%), Gaps = 7/503 (1%)

Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
             L P   L      ++  +R  ++  L  I+            +P +      D     
Sbjct: 86  HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
             A  L               L      LC+ +   VR  A   L      +   ++   
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 126 YIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            IP+   LA+ E      ++     +IA     + L+  +     Q  +D    VR   A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVA 240
               +    V P   KTD++  F++L +D +  VR  A        + L         ++
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            ILP I     D +  V+  +A+ +  L   +G + T   L+P ++  L+D   EVR+  
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +     ++      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
            + ++ L D    +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           I +L+   G       +    ++   D V ++R   A +L+++            + P +
Sbjct: 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563

Query: 481 LEMINNPHYLYRMTILRAISLLA 503
            ++  +     +     A+++L+
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLS 586

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 4e-14
 Identities = 56/471 (11%), Positives = 129/471 (27%), Gaps = 30/471 (6%)

Query: 33   LSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92
            +  +   LG +      I      N+      +     +      +         +P L 
Sbjct: 594  ICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA 653

Query: 93   TLCTVEETCVRDKAVESLCRI---GSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLF 149
            +     +  ++   + +L  +    S    + ++D  +  +  L +         A    
Sbjct: 654  SFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFL 713

Query: 150  HIAYPSAPDILKTELRSIYTQLCQ-----DDMPMVRRSAASNLGKFAATVEPAHLKTDIM 204
                   P  L     SI  +L               +          T        D++
Sbjct: 714  TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 773

Query: 205  SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF-----SQDKSWRVRY 259
             +          ++         A       + C      V+  F     +   +  +R 
Sbjct: 774  RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRL 833

Query: 260  MVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 319
            +    L E+   +     +++L    +        EV+ AA+  +            +  
Sbjct: 834  LALLSLGEVGHHIDLS-GQLELKSVILEAFSSPSEEVKSAASYALGSISVG-----NLPE 887

Query: 320  ILPCVKELSSDSSQHVRSALASV--IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN 377
             LP V +  +   +     L S+  I+  A ++G    +E +  + L   +      R  
Sbjct: 888  YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNV 947

Query: 378  IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--D 435
            +   L ++  +       ++LLP +           R +++  +    S           
Sbjct: 948  VAECLGKLTLI-----DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK 1002

Query: 436  KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486
                  ++ L+D   ++R  A       A    P      +   VL  + N
Sbjct: 1003 NCIGDFLKTLEDPDLNVRRVALVTFNSAAHN-KPSLIRDLL-DTVLPHLYN 1051

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 2e-12
 Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 20/262 (7%)

Query: 156  APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ 215
             P      +      +         R  A               + ++ S+  +      
Sbjct: 807  CPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPS 866

Query: 216  DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP- 274
            + V+  A     ALG +      +   LP ++        + +Y++ + L E+  +    
Sbjct: 867  EEVKSAASY---ALGSIS--VGNLPEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVV 920

Query: 275  --EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 332
              +P   ++    ++     E   R   A  + K   I    L     LP +K      S
Sbjct: 921  GLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-----LPRLKGYLISGS 975

Query: 333  QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390
             + RS++ + +        +  D  ++  +  FL  L+D   +VR   +   +       
Sbjct: 976  SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1035

Query: 391  ---IDLLSQSLLPAIVELAEDR 409
                DLL   +LP +    + R
Sbjct: 1036 SLIRDLLDT-VLPHLYNETKVR 1056

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 2e-10
 Identities = 42/370 (11%), Positives = 110/370 (29%), Gaps = 23/370 (6%)

Query: 177 PMVRRSAASNLGKFAATVEPAHLKTD---IMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233
              R  A ++L                  ++ +   L +D    V+ LAV+    L   +
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR------ 287
             +  V  I+  +         ++R + +  L  +   + P  +   L     +      
Sbjct: 77  -KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 288 ---LLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--ILPCVKELSSDSSQHVRSALASV 342
              + +  +  V++ A   +          L   H  IL C+    +     VR      
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195

Query: 343 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLP 400
           +  +    G    ++ +  +   L K++        I  +  +++  G  +      ++P
Sbjct: 196 LGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 255

Query: 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAAN 458
            +V+        +R   I+       +           +  +C+++L        D    
Sbjct: 256 LVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 315

Query: 459 NLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT--CSRLL 516
           +   +  +          +       ++  +  R    + +  +       +      + 
Sbjct: 316 DENAMDADG--GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS 373

Query: 517 PVVINASKDR 526
           P +I+  K+R
Sbjct: 374 PALISRFKER 383

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 35/260 (13%), Positives = 82/260 (31%), Gaps = 10/260 (3%)

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L         +  +  +  +  +  Q     VR +A  NL K  +            ++F
Sbjct: 201 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 260

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
               +  +  +  +A++G      + + +  +A          +      ++     L  
Sbjct: 261 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 320

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327
           L   +    T+ D          D++      AAG           +  + H+LP +KE 
Sbjct: 321 LVPILTQTLTKQDEND-------DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 373

Query: 328 SSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
             +     R A       +            + Q +P  + L+KD    VR      + +
Sbjct: 374 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 433

Query: 385 VNQVIGIDLLSQSLLPAIVE 404
           + +++    ++   L  +++
Sbjct: 434 ICELLPEAAINDVYLAPLLQ 453

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 51/378 (13%), Positives = 107/378 (28%), Gaps = 29/378 (7%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD------EVL 64
           +   + +    +     ++ + ++ IA A        ELIP L  N  + +      E  
Sbjct: 90  VKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKEST 149

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC--VRDKAVESLCR----IGSQMR 118
           L     +   I      + ++ +L  +      EE    V+  A  +L        +   
Sbjct: 150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 209

Query: 119 ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ----D 174
           +     + + +V           RV+A              ++T +      +       
Sbjct: 210 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 269

Query: 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234
           D+  V                      D+     +  +  +            AL  L+ 
Sbjct: 270 DIDEVALQGIEFWSNVCDEEM------DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 323

Query: 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 294
               +        + + D         A     L      +     ++P     +++ + 
Sbjct: 324 ----ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW 379

Query: 295 EVRIAAA---GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 351
             R AA    G + +       +  +   +P + EL  D S  VR   A  +  +  LL 
Sbjct: 380 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439

Query: 352 KDATIEQLLPIFLSLLKD 369
           + A  +  L   L  L +
Sbjct: 440 EAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 50/410 (12%), Positives = 115/410 (28%), Gaps = 54/410 (13%)

Query: 127 IPLVKRLAAGEWFTARVSA-----CGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
              V R+AAG      +++        +   + +     + E+++   Q    +      
Sbjct: 48  NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE-TYRPS 106

Query: 182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQDCV 239
           SA+  +   A    P +   +++        +   +  ++   +E    + + ++P+   
Sbjct: 107 SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 166

Query: 240 AHILPVIVNFSQ-----DKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR 290
                ++    Q     + S  V+    N L    E        E  R  ++       +
Sbjct: 167 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 226

Query: 291 DNEAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMA 347
             +  VR+AA   + K   +    +       +     E        V          + 
Sbjct: 227 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 286

Query: 348 -----------------------PLLGKDATIEQLLPIFLSL-------LKDEFPDVRLN 377
                                          ++ L+PI             D+  +    
Sbjct: 287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 346

Query: 378 IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437
               L  +      D++   L P I E  ++  WR R A +     +            +
Sbjct: 347 AGVCLMLLATCCEDDIVPHVL-PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 405

Query: 438 GALC---MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484
                  ++ ++D    +RD AA  + R+ E              +L+ +
Sbjct: 406 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 79/523 (15%), Positives = 160/523 (30%), Gaps = 42/523 (8%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE--------VLL 65
            ++ + +    +R      ++TIA     +    +L+P L    D +D          L 
Sbjct: 93  CLNNIGDSSPLIRATVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQ 151

Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLV 123
            + E+    +         ++++P            +R  AV  + +      ++    +
Sbjct: 152 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI 211

Query: 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS---IYTQLCQDDMPMVR 180
           D +   +  LA  E    R + C    +      D L   + +      Q  QD    V 
Sbjct: 212 DSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVA 271

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             A       A       +    +     +  +      +  +     + +     D   
Sbjct: 272 LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQ 331

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            I P           R R +      +  E    +   +D           ++  +R  +
Sbjct: 332 DIRPRFH--------RSRTVAQQHDEDGIEEEDDDDDEID------DDDTISDWNLRKCS 377

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQ 358
           A  +     +   EL + HILP +KEL       V+ +   V+  +A    +     + +
Sbjct: 378 AAALDVLANVYRDEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 436

Query: 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRL 415
           L+P  +  L D+   VR      L +    +     D   + L+  +++   D + RV+ 
Sbjct: 437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 496

Query: 416 AIIEYIPLLASQLG---VGFFDDKLGAL--CMQWLQDKVYSIRDAAANNLKR-LAEEFGP 469
           A       L  +     V +    L  L       Q K   I   A   L   +      
Sbjct: 497 AACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 556

Query: 470 EWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEI 510
              +Q + P +++  N           +L  +S +A  + S  
Sbjct: 557 PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 599

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 5e-08
 Identities = 44/321 (13%), Positives = 101/321 (31%), Gaps = 24/321 (7%)

Query: 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---PAHLKTDIMSIFEDLTQDDQDSVRL 220
           L  + T+L  +D P  R  +   L           P  +   I S   +   D    +R 
Sbjct: 48  LIFVLTKLKSEDEP-TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRA 106

Query: 221 LAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-- 278
                   +    E Q+    +LP + +    + +         L ++CE          
Sbjct: 107 TVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 165

Query: 279 -----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--ILPCVKELSSDS 331
                  ++P +++  + +  ++R  A   V +F       L +        +  L+ D 
Sbjct: 166 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDE 225

Query: 332 SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389
              VR  +   ++ +  +        +  ++   L   +D+  +V L             
Sbjct: 226 EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT----- 280

Query: 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV 449
              L  Q +   ++     +   V +  ++Y  +    L     +D+      Q ++ + 
Sbjct: 281 ---LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRF 337

Query: 450 YSIRDAAANNLKRLAEEFGPE 470
           +  R  A  + +   EE   +
Sbjct: 338 HRSRTVAQQHDEDGIEEEDDD 358

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 61/430 (14%), Positives = 130/430 (30%), Gaps = 41/430 (9%)

Query: 3   MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE------- 55
             DE         D+  +DD  +   ++R+ S  A  +     R EL+P +         
Sbjct: 346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF 405

Query: 56  NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGS 115
           +++   +    +           G + +   L+P L    + ++  VR     +L R   
Sbjct: 406 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465

Query: 116 QMRESDLVDWYIPLV-----------KRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164
            +       +  PL+           KR+                    P    IL T +
Sbjct: 466 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLV 525

Query: 165 RSIYTQLCQDDMPMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFEDLTQDDQDSVRLLA 222
            +      Q    ++   A   L         +P +++  +  + +       +   L  
Sbjct: 526 FAF--SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 583

Query: 223 VEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282
           +  C +          + +  PV           +   + N           E    D +
Sbjct: 584 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY----EAPDKDFM 639

Query: 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 342
              + LL           +G        +   +A  +IL  + +   D    VR +  ++
Sbjct: 640 IVALDLL-----------SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFAL 688

Query: 343 IMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSL 398
           +  +     +     I   +PI  + L  EF  V  N    + +++  +GI++      +
Sbjct: 689 LGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMV 748

Query: 399 LPAIVELAED 408
           L  +VE+   
Sbjct: 749 LHQLVEIINR 758

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 54.0 bits (129), Expect = 9e-09
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 53/199 (26%)

Query: 282 VPAYVRLLRDNEAEVRIAAAG-------------KVTKFCRILNPELAIQHILPCVKELS 328
           V A   L+RD++  VR A A              +  +    +   L ++ +        
Sbjct: 68  VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA--D 125

Query: 329 SDSSQHVRSALASVIMGMAPLL-------GKDATIEQLLPIFLSLLKDEFPDVRLNIISK 381
            D               +   +        K             + +D  P+VR  + S+
Sbjct: 126 RDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR 185

Query: 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441
           L                   ++EL  D  W VRLA +E+  L A                
Sbjct: 186 LR---------------GDDLLELLHDPDWTVRLAAVEHASLEA---------------- 214

Query: 442 MQWLQDKVYSIRDAAANNL 460
           ++ L +    +R A A  L
Sbjct: 215 LRELDEPDPEVRLAIAGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 54.0 bits (129), Expect = 9e-09
 Identities = 53/301 (17%), Positives = 86/301 (28%), Gaps = 93/301 (30%)

Query: 91  LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH 150
           L   CT  + CV  ++   + R                L  +  A  ++  R  A     
Sbjct: 17  LTGRCTPGDACVAVESGRQIDRFFR---------NNPHLAVQYLADPFWERRAIA----- 62

Query: 151 IAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210
               S  + L        T L +D   +VRR+ A  L +                    L
Sbjct: 63  -VRYSPVEAL--------TPLIRDSDEVVRRAVAYRLPR---------------EQLSAL 98

Query: 211 TQDDQDSVRLLAVEGC--AALGKLLEPQD-------CVAHILPVIVNFSQDKSWRVRYMV 261
             D+   VR+   +      L ++   +D               +  F +D+  +VR +V
Sbjct: 99  MFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLV 158

Query: 262 ANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321
           A +                   +   + +D E EVR   A ++                 
Sbjct: 159 AKR---------------LPEESLGLMTQDPEPEVRRIVASRL---------------RG 188

Query: 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 381
             + EL  D    VR A                  E      L  L +  P+VRL I  +
Sbjct: 189 DDLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGR 232

Query: 382 L 382
           L
Sbjct: 233 L 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 41/266 (15%), Positives = 68/266 (25%), Gaps = 92/266 (34%)

Query: 38  RALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV 97
           RA+    +  E +  L    D D+ V  A+A  L                   L  L   
Sbjct: 59  RAIAVRYSPVEALTPLI--RDSDEVVRRAVAYRLPR---------------EQLSALMFD 101

Query: 98  EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157
           E+  VR    + L                +  ++++AA   +  R               
Sbjct: 102 EDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPP------ 140

Query: 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS 217
                       +  +D+   VR+  A  L                      +TQD +  
Sbjct: 141 --------GRLFRFMRDEDRQVRKLVAKRLP---------------EESLGLMTQDPEPE 177

Query: 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277
           VR +                        ++    D  W VR                   
Sbjct: 178 VRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVEH------------- 209

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAGK 303
                   +R L + + EVR+A AG+
Sbjct: 210 ---ASLEALRELDEPDPEVRLAIAGR 232

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 3e-08
 Identities = 64/596 (10%), Positives = 156/596 (26%), Gaps = 80/596 (13%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN--NDDDDEVLLAMAEEL 71
            +  L + + ++   + + ++ IA          EL+  + +N   +  + V  A    L
Sbjct: 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159

Query: 72  GVFIPYVGG-----VEHAHVLLPPL--ETLCTVEETCVRDKAVESLCR----IGSQMRES 120
           G             V  ++ +L  +      T     VR  A+ +L      I + M   
Sbjct: 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC----QDDM 176
              ++ + +V      E    + +A G            +K  +      L     +   
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPN 279

Query: 177 PMVRRSAASNLGKFAATVE------------PAHLKTDIMSIFEDLTQD----------- 213
             V                            P       +S  +D+  +           
Sbjct: 280 DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339

Query: 214 --DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271
             D D    ++   C  L         +  +L  +       +WR R         + + 
Sbjct: 340 PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399

Query: 272 VGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL- 327
                        +P+ + L+ D   +V+   A  + +    +   +  Q  LP V +  
Sbjct: 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQAC 459

Query: 328 --SSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKL 382
                    V +  +  I+ +   L +            +   L+               
Sbjct: 460 LIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS 519

Query: 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----------- 431
                   ++  + ++      ++     ++   +      L  +               
Sbjct: 520 AFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV 579

Query: 432 --------------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQH 475
                           D  +G       +     I D     +  LA   G  +   ++ 
Sbjct: 580 LAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET 639

Query: 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT--CSRLLPVVINASKDRYLN 529
            +P +L+ +N       +T +  I+ ++  +  +       ++ V+     +    
Sbjct: 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNAR 695

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 44/313 (14%), Positives = 91/313 (29%), Gaps = 34/313 (10%)

Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEV 296
            A    ++ N        +R     QL +L      +           ++L D   + E 
Sbjct: 3   TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQ-----FAGLSSQVLIDENTKLEG 57

Query: 297 RIAAAGKVTKFCRILNPELAIQHILPCVKELS---------------SDSSQHVRSALAS 341
           RI AA  +       +     Q     + ++S                     + +A A 
Sbjct: 58  RILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQ 117

Query: 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLS----- 395
           +I  +A +        +L+ I +     E P+ V+   +  L  + +       +     
Sbjct: 118 LIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177

Query: 396 QSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW----LQDKV 449
            ++L AIV+ A+       VRLA +  +      +      +      MQ      Q + 
Sbjct: 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237

Query: 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509
             ++ AA   L ++  ++                I              +   + +   E
Sbjct: 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297

Query: 510 ITCSRLLPVVINA 522
           I  +  L     +
Sbjct: 298 IDIAYELAQFPQS 310

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 52/368 (14%), Positives = 108/368 (29%), Gaps = 19/368 (5%)

Query: 20  NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE---NNDDDDEVLLAMAEELGVFIP 76
             +     ++ + ++ IA A        ELIP L     N +  + +  +  E +G    
Sbjct: 100 GTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159

Query: 77  YVGG---VEHAHVLLPPLETLCTVEETCVRDKA------VESLCRIGSQMRESDLVDWYI 127
            +      + ++ +L  +      EE     K       + SL    +   +     + +
Sbjct: 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219

Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
            +V           RV+A              ++T +      +  + M       A   
Sbjct: 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279

Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
            +F + V     + D+     +  +  +            AL  L+         L    
Sbjct: 280 IEFWSNV--CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT---QTLTKQD 334

Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
               D  W         L  L      +  P  +  +  +++       +  + A G + 
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394

Query: 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS 365
           +       +  +   +P + EL  D S  VR   A  +  +  LL + A  +  L   L 
Sbjct: 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454

Query: 366 LLKDEFPD 373
            L +    
Sbjct: 455 CLIEGLSA 462

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 39/271 (14%), Positives = 80/271 (29%), Gaps = 42/271 (15%)

Query: 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229
           +L  D   + R S+A  L              D + +  +   D     R +       L
Sbjct: 26  RLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAF---IL 74

Query: 230 GKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 288
           G++   + C  ++  ++ N    DKS  VR        + C+          +V      
Sbjct: 75  GQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348
             D    VR A A  ++         L I  +     ++ + ++  +             
Sbjct: 133 AFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDC 192

Query: 349 LL-----------------GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391
            +                       +++L +    LK     V  +II    +       
Sbjct: 193 FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK--NTVYDDIIEAAGE------- 243

Query: 392 DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYI 421
            L  ++LLP +   L +     +  + I+ +
Sbjct: 244 -LGDKTLLPVLDTMLYKFDDNEIITSAIDKL 273

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	530
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.95
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.95
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.94
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.93
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.91
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.91
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.9
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.9
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.75
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.75
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.71
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.65
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.64
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.62
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.58
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.54
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.34
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.32
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.23
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.21
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.98
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.94
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.79
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.76
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.14
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.8
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.85
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	92.98
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	92.07
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	90.95
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	90.78
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	90.77
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	90.15
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	89.24
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	88.97
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	87.7
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	83.14
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	82.87
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	81.88

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-59  Score=477.92  Aligned_cols=529  Identities=60%  Similarity=0.973  Sum_probs=500.9

Q ss_pred             CCCCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCc
Q 009632            2 AMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV   81 (530)
Q Consensus         2 ~~~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~   81 (530)
                      +++||++++|+.|++.|+++|+..|..|++.++.++..+|+++++++++|++.+..+++++++..+++.|+.+...+|++
T Consensus         3 ~~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~   82 (588)
T d1b3ua_           3 ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGP   82 (588)
T ss_dssp             SCTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSG
T ss_pred             CCcCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Confidence            68999999999999999999999999999999999999999999999999999966667789999999999999999989


Q ss_pred             cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHH
Q 009632           82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK  161 (530)
Q Consensus        82 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~  161 (530)
                      ++...+++.+..++.+++..||..|++++..++...+++.....+.|++..+.++++...|..++.+++.++...++...
T Consensus        83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~  162 (588)
T d1b3ua_          83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK  162 (588)
T ss_dssp             GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred             hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999988899999999999999888999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhc
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  241 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (530)
                      .++++.+.++++|+++.||+.++.+++.+++..+.+...+.++|.+.++++|+++.||..|++++..++..++.+.....
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  242 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL  242 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHH
Confidence            99999999999999999999999999999999998888889999999999999999999999999999999998877888


Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHH
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAI  317 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~  317 (530)
                      ++|.+..+++|++|+||..++++++.++..++.+.....++|.+..+++|++++||..++.+++.++..++..    ...
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~  322 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM  322 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            9999999999999999999999999999999887777789999999999999999999999999999887643    345


Q ss_pred             hhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhh
Q 009632          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (530)
Q Consensus       318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  397 (530)
                      +.++|.+.....|.++.+|..++..+..++..+|.+.+.+.++|.+...++|+++.+|..++.+++.+...+|.....+.
T Consensus       323 ~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~  402 (588)
T d1b3ua_         323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS  402 (588)
T ss_dssp             HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhH
Confidence            78899999999999999999999999999988898888899999999999999999999999999999999998888899


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhH
Q 009632          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  477 (530)
Q Consensus       398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~  477 (530)
                      ++|.+.+..++++|++|..++.+++.+++.+|.+++.+.+.|.+..++.|+.+.||.+|+.+++.++..+|.++....++
T Consensus       403 ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~  482 (588)
T d1b3ua_         403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII  482 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999999999999999999999989999999999999999999999999999999999998888899


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCCCCC
Q 009632          478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL  530 (530)
Q Consensus       478 ~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~~~v  530 (530)
                      |.+.++++|+++.+|..++.+++.+.+.++.+.+.++++|.+.++++|++|||
T Consensus       483 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nV  535 (588)
T d1b3ua_         483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV  535 (588)
T ss_dssp             HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHH
Confidence            99999999999999999999999999999988889999999999999999986

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-48  Score=394.65  Aligned_cols=490  Identities=19%  Similarity=0.258  Sum_probs=447.8

Q ss_pred             HHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHH
Q 009632           13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL   91 (530)
Q Consensus        13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l   91 (530)
                      .+...+.++++..|..|+..+..++...+++...+.+.|++.. ..++....|..++..++.+....+ ......+.+.+
T Consensus        91 ~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~-~~~~~~l~~~~  169 (588)
T d1b3ua_          91 PLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYF  169 (588)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HHHHHHHHHHH
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence            4445567888999999999999999999988888889998887 555667788888888888877655 45567788999


Q ss_pred             HhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-HHHHHHHHHHh
Q 009632           92 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQ  170 (530)
Q Consensus        92 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~l~~  170 (530)
                      ..+++|+++.||+.++.+++.+++..+.+.....++|.+..+.+|+++.+|..+...++.+....+++ ....++|.+..
T Consensus       170 ~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~  249 (588)
T d1b3ua_         170 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ  249 (588)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHH
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988888899999999999999999999999999988877765 56778999999


Q ss_pred             hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----hhhhccHHHH
Q 009632          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVI  246 (530)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l  246 (530)
                      +++|++|.||..++++++.++..++++...+.++|.+..++.|+++.||..+++.+..++..++..    .+.+.++|.+
T Consensus       250 ~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l  329 (588)
T d1b3ua_         250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI  329 (588)
T ss_dssp             HHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred             hcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence            999999999999999999999999988777889999999999999999999999999999988753    3457799999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhH
Q 009632          247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (530)
Q Consensus       247 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~  326 (530)
                      ....+|.++.||..++.++..++..+|.+...+.++|.+.+.++|++++||..++.+++.+...+|.....+.++|.+..
T Consensus       330 ~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~  409 (588)
T d1b3ua_         330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE  409 (588)
T ss_dssp             HHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHH
Confidence            99999999999999999999999998887777889999999999999999999999999999999988888999999999


Q ss_pred             hccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh
Q 009632          327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  406 (530)
Q Consensus       327 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~  406 (530)
                      +.+|.+|++|..+++.++.++..+|.+.+.+.+.|.+..++.|+.+.||..|+.+++.++..+|.++..+.++|.+.++.
T Consensus       410 ~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~  489 (588)
T d1b3ua_         410 LAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS  489 (588)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998888889999999999999999999999999999999999988889999999999


Q ss_pred             cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccC
Q 009632          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  486 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d  486 (530)
                      ++++|..|..++.+++.+...++.+.+.++++|.+.++++|++++||..++++++.+...+++......+.|.+.++.+|
T Consensus       490 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~~D  569 (588)
T d1b3ua_         490 GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQD  569 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHcCC
Confidence            99999999999999999999999888889999999999999999999999999999998888777778899999999999


Q ss_pred             CChHHHHHHHHHHHHHh
Q 009632          487 PHYLYRMTILRAISLLA  503 (530)
Q Consensus       487 ~~~~vr~~a~~~l~~i~  503 (530)
                      +|.+||..|.+++..+.
T Consensus       570 ~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         570 QDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             SSHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999999875

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-26  Score=242.93  Aligned_cols=514  Identities=13%  Similarity=0.113  Sum_probs=372.9

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhCh--Hhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCc--cchh
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV--EHAH   85 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~   85 (530)
                      +..+++.+.++++..|..|+..+..+....+.  ....+.+++.+.. ..++++++|..+..++..++......  .+..
T Consensus       174 l~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~  253 (888)
T d1qbkb_         174 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH  253 (888)
T ss_dssp             THHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTT
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            55777888899999999999888766543321  1123355666655 67889999999999998887754421  2445


Q ss_pred             cchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh-hhhh---hhHHHHHHH-----------------------------
Q 009632           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLV---DWYIPLVKR-----------------------------  132 (530)
Q Consensus        86 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~---~~l~~~l~~-----------------------------  132 (530)
                      .+++.+.....|++..||..|++.+..+++.-.. ....   ..+.|.+..                             
T Consensus       254 ~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  333 (888)
T d1qbkb_         254 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDI  333 (888)
T ss_dssp             TTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGC
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHH
Confidence            6667666777889999999999887776543110 0000   001110000                             


Q ss_pred             ----------------------------Hhc---CCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHH
Q 009632          133 ----------------------------LAA---GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR  181 (530)
Q Consensus       133 ----------------------------l~~---~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~  181 (530)
                                                  ...   ...|..|..+..++..++...+++..+.+++.+.+.+.+++|.+|+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~re  413 (888)
T d1qbkb_         334 RPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKE  413 (888)
T ss_dssp             CCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHH
Confidence                                        000   1135678888888888888888888899999999999999999999


Q ss_pred             HHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCCCCHH
Q 009632          182 SAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWR  256 (530)
Q Consensus       182 ~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~  256 (530)
                      +++.+++.+++...+  ..+.+.++|.+.+.+.|+++.||..++.+++.++....+   +.+...+++.+...+.|.+++
T Consensus       414 aa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~  493 (888)
T d1qbkb_         414 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKR  493 (888)
T ss_dssp             HHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHH
T ss_pred             HHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHH
Confidence            999999998875543  345678999999999999999999999999999876543   345677888888889999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHhhhhHhHhHhcc-
Q 009632          257 VRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSS-  329 (530)
Q Consensus       257 vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~-  329 (530)
                      ||..++.+|..+.+..+...  +.+.+++.+...+.+.....+..+..+++.++...+..    .+.+.++|.+..... 
T Consensus       494 V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  573 (888)
T d1qbkb_         494 VQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM  573 (888)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999887653  34678888888888888888888888998888766543    445566666654322 


Q ss_pred             --CCcHHHHHHHHHHHHhhccccCHH--HHH----HhHHHHHHHhh-------------cCCChHHHHHHHHhhHHhhhh
Q 009632          330 --DSSQHVRSALASVIMGMAPLLGKD--ATI----EQLLPIFLSLL-------------KDEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       330 --d~~~~vr~~~~~~l~~l~~~~~~~--~~~----~~l~~~l~~~l-------------~d~~~~vr~~a~~~l~~l~~~  388 (530)
                        +.+ ..+..+.++++.++...+..  .+.    +.++..+...+             .+.+..+...++..++.+++.
T Consensus       574 ~~~~~-~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~  652 (888)
T d1qbkb_         574 LKDED-KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEG  652 (888)
T ss_dssp             SCTTC-TTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHH
T ss_pred             cccch-HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHH
Confidence              222 23344566666665555432  111    22222222211             123556777888888888887


Q ss_pred             hchhH---H-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 009632          389 IGIDL---L-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKR  462 (530)
Q Consensus       389 ~~~~~---~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~  462 (530)
                      +|...   + ...+++.+...+++.++.+|..++..++.++..++...  +.+.++|.+.+.+.++...|+..|+.++|.
T Consensus       653 l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~  732 (888)
T d1qbkb_         653 LGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGE  732 (888)
T ss_dssp             HTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            77532   1 13478888888999999999999999999998877654  567899999999999999999999999999


Q ss_pred             HHHHhChhHH--hhhhHHHHHhhccCCC--hHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHhhccC
Q 009632          463 LAEEFGPEWA--MQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKD  525 (530)
Q Consensus       463 l~~~~~~~~~--~~~i~~~l~~~~~d~~--~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~~l~D  525 (530)
                      ++...|....  ...+++.+.+.+++++  ..++.+++.++|+++...+...  +.+.+++.+...+.+
T Consensus       733 ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~  801 (888)
T d1qbkb_         733 ISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN  801 (888)
T ss_dssp             HHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhcc
Confidence            9999886643  2678888888888764  4589999999999988776533  467777766666544

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.7e-28  Score=258.42  Aligned_cols=469  Identities=17%  Similarity=0.164  Sum_probs=332.4

Q ss_pred             cCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh-------hhhhHHHH
Q 009632           57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-------LVDWYIPL  129 (530)
Q Consensus        57 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~l~~~  129 (530)
                      .++++.+|..++.+++.++...+ ...|+.++|.|...+.+++..+|+.|+.+|+.+++......       ....++|.
T Consensus        98 ~~~~~~vr~~~~~~i~~i~~~~~-~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~  176 (888)
T d1qbkb_          98 GDSSPLIRATVGILITTIASKGE-LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPK  176 (888)
T ss_dssp             GCCCSSTTTTTTTTTHHHHTTTS-SCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Confidence            34455556555555555555322 45677888888888888888889999999999887543311       12347778


Q ss_pred             HHHHhcCCccchhHHHHhHhhhhcCCCCh---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHH
Q 009632          130 VKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIM  204 (530)
Q Consensus       130 l~~l~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~  204 (530)
                      +....+++++.+|..+..++..+....+.   ...+.+++.+.....|+++.||+.++.++..+....+..  .....++
T Consensus       177 ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~  256 (888)
T d1qbkb_         177 FLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIV  256 (888)
T ss_dssp             HHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTT
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            88888888888999888888877665443   256778888888899999999999999998877654431  1223344


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHH--------------------------------------------------------
Q 009632          205 SIFEDLTQDDQDSVRLLAVEGCAA--------------------------------------------------------  228 (530)
Q Consensus       205 ~~l~~~~~d~~~~vr~~a~~~l~~--------------------------------------------------------  228 (530)
                      +.+.+.+.|+++.||..|++.+..                                                        
T Consensus       257 ~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  336 (888)
T d1qbkb_         257 EYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPR  336 (888)
T ss_dssp             TTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCC
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHH
Confidence            444455555555555555554443                                                        


Q ss_pred             -----------------------------------------------HhhhcCchhhhhccHHHHHHhcCCCCHHHHHHH
Q 009632          229 -----------------------------------------------LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV  261 (530)
Q Consensus       229 -----------------------------------------------l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~  261 (530)
                                                                     ++...+++ ..+.++|.+.+.+++++|..|.++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~-il~~~l~~l~~~l~s~~~~~reaa  415 (888)
T d1qbkb_         337 FHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESG  415 (888)
T ss_dssp             CCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSS-SHHHHHHHHHHTTTSSSHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHH-HHHHHHHHHHHhhccchhHHHHHH
Confidence                                                           33333322 234567777888899999999999


Q ss_pred             HHHHHHHHHHhCCc--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHhhhhHhHhHhccCCcHHHH
Q 009632          262 ANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVR  336 (530)
Q Consensus       262 ~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr  336 (530)
                      +.+++.+++...+.  .....++|.+++.+.|+++.||..++.+++.++..+..   +.+...+++.+...+.|.+++||
T Consensus       416 ~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~  495 (888)
T d1qbkb_         416 ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ  495 (888)
T ss_dssp             HHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHH
T ss_pred             HHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHH
Confidence            99999887643221  22457889999999999999999999999999886533   34456778888888889999999


Q ss_pred             HHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh----HHHhhHHHHHHHHh----
Q 009632          337 SALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELA----  406 (530)
Q Consensus       337 ~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~----  406 (530)
                      ..++.++..+++..+.  ..+.+.+++.+...+++.....+..+.++++.++...|..    .+.+.++|.+....    
T Consensus       496 ~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  575 (888)
T d1qbkb_         496 EAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK  575 (888)
T ss_dssp             HHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcc
Confidence            9999999988876553  2456778888888888888888877777777776544321    11122222221110    


Q ss_pred             --------------------------------------------------------cCCChHHHHHHHHHHHHHHhhhCh
Q 009632          407 --------------------------------------------------------EDRHWRVRLAIIEYIPLLASQLGV  430 (530)
Q Consensus       407 --------------------------------------------------------~~~~~~~R~~~~~~l~~l~~~~~~  430 (530)
                                                                              ..++......++..++.+++.+|.
T Consensus       576 ~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~  655 (888)
T d1qbkb_         576 DEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG  655 (888)
T ss_dssp             TTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhh
Confidence                                                                    112334455566666666666665


Q ss_pred             hhHH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632          431 GFFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (530)
Q Consensus       431 ~~~~----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~  504 (530)
                      .+..    ..+++.+...+.|..+.||..|..++|.++...+....  .+.++|.+...+++++..++.++++++|.++.
T Consensus       656 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~  735 (888)
T d1qbkb_         656 NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISI  735 (888)
T ss_dssp             TTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence            4311    23688888999999999999999999999988776532  36788888898999999999999999999998


Q ss_pred             hcChH--HHHhhHHHHHHhhccCCC
Q 009632          505 VMGSE--ITCSRLLPVVINASKDRY  527 (530)
Q Consensus       505 ~~~~~--~~~~~~~p~l~~~l~D~~  527 (530)
                      ..|.+  .+.+.+++.|...++++.
T Consensus       736 ~~~~~~~py~~~il~~L~~il~~~~  760 (888)
T d1qbkb_         736 QMGIEMQPYIPMVLHQLVEIINRPN  760 (888)
T ss_dssp             HTGGGGGGGSHHHHHHHHHHHTCTT
T ss_pred             HHHHHhhhhHHHHHHHHHHHHcCCC
Confidence            88754  356677888888887653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.4e-25  Score=239.93  Aligned_cols=514  Identities=13%  Similarity=0.126  Sum_probs=360.0

Q ss_pred             CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhh---ChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccch
Q 009632            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARAL---GEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (530)
Q Consensus         9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~---~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~   84 (530)
                      |.|+.|+++|.|+|+..|.+|+..|.+....-   ..+.....+++.+.. +.|++++||..|.++|+.++..++ ++..
T Consensus         3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~-~~~~   81 (1207)
T d1u6gc_           3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EYQV   81 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred             hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc-HhhH
Confidence            67899999999999999999998777653211   112233456777766 889999999999999999998877 4556


Q ss_pred             hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh--------hhhhHHHHHHHHh-cCCccchhHHHHhHhhhhcCC
Q 009632           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--------LVDWYIPLVKRLA-AGEWFTARVSACGLFHIAYPS  155 (530)
Q Consensus        85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~l~-~~~~~~~r~~~~~~l~~l~~~  155 (530)
                      ..+++.|...+.+++..+|..+..++..+...++...        ....+.+.+.... +.+++.+|..++..++.+...
T Consensus        82 ~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~  161 (1207)
T d1u6gc_          82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  161 (1207)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            6777777777778888999999999999988775421        1222344443333 345677898888888887766


Q ss_pred             CCh---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh
Q 009632          156 APD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  232 (530)
Q Consensus       156 ~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  232 (530)
                      .+.   .+...+++.+...++++++.||+.|+.+++.++..++.+.+...+-..+..+..+.+..+|..++.+++.++..
T Consensus       162 ~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~  241 (1207)
T d1u6gc_         162 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ  241 (1207)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred             hhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            554   35678899999999999999999999999999988877554333333344455666777888899999999988


Q ss_pred             cCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632          233 LEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC  308 (530)
Q Consensus       233 ~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  308 (530)
                      .|.  ..+.+.++|.+...+++.+..+|..++.++..+...++.+..  ...+++.+.+.+.+.................
T Consensus       242 ~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~  321 (1207)
T d1u6gc_         242 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD  321 (1207)
T ss_dssp             SSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------
T ss_pred             cchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhh
Confidence            776  345677899999999998899999999999999988776542  3456666666665432111111111111111


Q ss_pred             HhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632          309 RILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (530)
Q Consensus       309 ~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  386 (530)
                      .....  ......+.......|.+|++|..+++.+..++...+.  ..+...+.|.+...+.|.++.||..+..++..+.
T Consensus       322 ~~~~~--~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~  399 (1207)
T d1u6gc_         322 ADGGD--DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL  399 (1207)
T ss_dssp             ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred             hhccc--hhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            11111  1122223333335678999999999999998776653  3456788999999999999999999999999887


Q ss_pred             hhhch---------------------hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh--hHHHHHHHHHHH
Q 009632          387 QVIGI---------------------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ  443 (530)
Q Consensus       387 ~~~~~---------------------~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~  443 (530)
                      ...+.                     ....+.+++.+.+.+.+.+..+|..++..+..++...+..  .+...+++.+..
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~  479 (1207)
T d1u6gc_         400 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF  479 (1207)
T ss_dssp             HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred             HhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHH
Confidence            65421                     1122456777788888999999999999999998877643  245667888888


Q ss_pred             HhcCCc--HHHHHHHHHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh---------H
Q 009632          444 WLQDKV--YSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---------E  509 (530)
Q Consensus       444 ~l~d~~--~~Vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~---------~  509 (530)
                      .+.|+.  ..+|..++.+++.+....+.+..   ...+.+.+.....|+.+.++..+..+++.+...+++         .
T Consensus       480 ~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~  559 (1207)
T d1u6gc_         480 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT  559 (1207)
T ss_dssp             HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhH
Confidence            887654  57899999999999887765532   256788888889999999999999999988776542         2


Q ss_pred             HHHhhHHHHHHhhccC
Q 009632          510 ITCSRLLPVVINASKD  525 (530)
Q Consensus       510 ~~~~~~~p~l~~~l~D  525 (530)
                      .....+++.+...+.+
T Consensus       560 ~~~~~l~~~~~~~l~~  575 (1207)
T d1u6gc_         560 PYIKDLFTCTIKRLKA  575 (1207)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            2345556666555544

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.8e-22  Score=209.60  Aligned_cols=516  Identities=13%  Similarity=0.131  Sum_probs=322.3

Q ss_pred             HHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccC-CchHHHHHHHHHHhcccccCCC--ccchhcc
Q 009632           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGG--VEHAHVL   87 (530)
Q Consensus        12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l   87 (530)
                      ..+++.+.++++..|..+...++.++..-.|+..|++++|.+.+ +.+ ++..+|..+..+++.+....+.  ......+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~  177 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45678889999999999999999998877777778999999887 444 4556788888888877654442  1223333


Q ss_pred             hhHHHhh----h-cccchHHHHHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh
Q 009632           88 LPPLETL----C-TVEETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (530)
Q Consensus        88 ~~~l~~l----~-~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~  158 (530)
                      .+++..+    . .+.+..+|..++.++..+...+...    .....+++.+....+++++.+|..++.++..+....++
T Consensus       178 ~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  257 (861)
T d2bpta1         178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3333322    2 4567899999999999988876542    23345677777888888889999888888777654433


Q ss_pred             H---HHHH-HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-------------------hhhHHHHHHHHHHhhcC--
Q 009632          159 I---LKTE-LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------------AHLKTDIMSIFEDLTQD--  213 (530)
Q Consensus       159 ~---~~~~-l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~~~d--  213 (530)
                      .   +... +.........+.++.+|..+...+..++.....                   ......++|.+.+.+.+  
T Consensus       258 ~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~  337 (861)
T d2bpta1         258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2   2222 333444556677777888777777666543210                   01122344444443321  


Q ss_pred             -----CchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHH
Q 009632          214 -----DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAY  285 (530)
Q Consensus       214 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l  285 (530)
                           ++..+|..+..++..++...+.. ..+.+.+.+.....+.+|..|.+++..++.+....+.   ....+.+++.+
T Consensus       338 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l  416 (861)
T d2bpta1         338 EDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHhhcchh-hhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence                 12345555555555555555433 3344555555555555555555555555554443221   22334455555


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHh-------------------------------------------
Q 009632          286 VRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ-------------------------------------------  318 (530)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~-------------------------------------------  318 (530)
                      .+.+.|+++.||..++.+++.++..++..    ...+                                           
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  496 (861)
T d2bpta1         417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY  496 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred             HHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHH
Confidence            55555555555555555555555443221    0001                                           


Q ss_pred             -hhhHhHhHhc--cCCcHHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhh----cCCC-----------hHHHHHH
Q 009632          319 -HILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLL----KDEF-----------PDVRLNI  378 (530)
Q Consensus       319 -~l~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l----~d~~-----------~~vr~~a  378 (530)
                       .++..+....  .+.+..+|..+..++..++...+..  .+...+.+.+...+    ....           ..++..+
T Consensus       497 ~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  576 (861)
T d2bpta1         497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI  576 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence             1111111111  2345567777777776666555432  12233333333332    2111           2344555


Q ss_pred             HHhhHHhhhhhchh--HHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHH
Q 009632          379 ISKLDQVNQVIGID--LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIR  453 (530)
Q Consensus       379 ~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr  453 (530)
                      ...++.+....+..  .+.+.+++.+.+.+.+ .++.+|..++.+++.++..+|.++  +.+.++|.+...+.|....||
T Consensus       577 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~  656 (861)
T d2bpta1         577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS  656 (861)
T ss_dssp             HHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHH
Confidence            55555555544332  2235667777666654 457899999999999999988765  457899999999999999999


Q ss_pred             HHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCC--ChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCCC
Q 009632          454 DAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRY  527 (530)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~~  527 (530)
                      ..|+.+++.++...+....  ...+++.+.+.+.++  +..+|..++.+++.++..+|..  .+.+.++|.+.+.+....
T Consensus       657 ~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~  736 (861)
T d2bpta1         657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP  736 (861)
T ss_dssp             HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence            9999999999998876532  366888888888765  5679999999999999988864  357888998888777655


Q ss_pred             C
Q 009632          528 L  528 (530)
Q Consensus       528 ~  528 (530)
                      .
T Consensus       737 ~  737 (861)
T d2bpta1         737 E  737 (861)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.4e-20  Score=197.12  Aligned_cols=512  Identities=14%  Similarity=0.135  Sum_probs=353.0

Q ss_pred             cHHHHHHH-hcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-cc--CCchHHHHHHHHHHhcccccCCC-----
Q 009632           10 PIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NN--DDDDEVLLAMAEELGVFIPYVGG-----   80 (530)
Q Consensus        10 ~~~~l~~~-l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~--d~~~~vr~~~~~~l~~~~~~~~~-----   80 (530)
                      .+..++++ +.|+|+..|..|-+.|.++...- +    ..+++.+.+ +.  +.+..+|..++..|.+.......     
T Consensus         5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-~----~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDN-F----LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC-H----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-c----hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            35566655 68999999999999998775432 1    133344444 22  34568999999999876543211     


Q ss_pred             ----------ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC-ccchhHHHHhHh
Q 009632           81 ----------VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLF  149 (530)
Q Consensus        81 ----------~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~~~~~l  149 (530)
                                ++....+-..+...+.+++..+|..++.+++.++..--+...++.+++.+.....++ ....|..+..++
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l  159 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL  159 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred             HHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                      112223334444556788899999999999999876444444566778777777665 456788888888


Q ss_pred             hhhcCCCChH------HHHHHHHHHHhhc--CCCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhcCCchh
Q 009632          150 HIAYPSAPDI------LKTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDS  217 (530)
Q Consensus       150 ~~l~~~~~~~------~~~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~  217 (530)
                      +.++...+..      ....+++.+...+  .+.+..||..+..++..+...++.    ......+++.+.+.+.++++.
T Consensus       160 ~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  239 (861)
T d2bpta1         160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE  239 (861)
T ss_dssp             HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHH
Confidence            8876555432      3344555444433  466789999999999998876654    233456778888889999999


Q ss_pred             HHHHHHHHHHHHhhhcCch--hhhhc-cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----------CCc---------
Q 009632          218 VRLLAVEGCAALGKLLEPQ--DCVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAV----------GPE---------  275 (530)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~--~~~~~-~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----------~~~---------  275 (530)
                      +|..+.+++..++...++.  .+... +.+......++.++.+|..+...+..++...          ...         
T Consensus       240 ~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (861)
T d2bpta1         240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL  319 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            9999999999999876542  12222 3333445667888999999988887766531          110         


Q ss_pred             ccccchHHHHHHhcC-------CCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632          276 PTRMDLVPAYVRLLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (530)
Q Consensus       276 ~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~  348 (530)
                      .....++|.+...+.       +.++.++..+..++..++...+... .+.+.+.+.....+.+|+.|.+++..++.++.
T Consensus       320 ~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  398 (861)
T d2bpta1         320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhh-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            012345666666553       2346789999999999998887654 36667777788889999999999999999998


Q ss_pred             ccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH----HHh-------------------------
Q 009632          349 LLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQ-------------------------  396 (530)
Q Consensus       349 ~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~-------------------------  396 (530)
                      ..+..   .+.+.++|.+...+.|+++.||..++.+++.++..++...    ...                         
T Consensus       399 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~  478 (861)
T d2bpta1         399 GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII  478 (861)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHH
Confidence            77754   3567889999999999999999999999998877654210    000                         


Q ss_pred             -------------------hHHHHHHHHh--cCCChHHHHHHHHHHHHHHhhhChhh-----------------------
Q 009632          397 -------------------SLLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGF-----------------------  432 (530)
Q Consensus       397 -------------------~l~~~l~~~~--~~~~~~~R~~~~~~l~~l~~~~~~~~-----------------------  432 (530)
                                         .++..+....  .+.++.+|..+..++..++...+...                       
T Consensus       479 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  558 (861)
T d2bpta1         479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE  558 (861)
T ss_dssp             HHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred             HHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                               1111111111  22345677777777776655433211                       


Q ss_pred             -----------------------------------HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhChhHH--hh
Q 009632          433 -----------------------------------FDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWA--MQ  474 (530)
Q Consensus       433 -----------------------------------~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~  474 (530)
                                                         +.+.+++.+.+.+. ++...+|..++.+++.++..+|+.+.  ..
T Consensus       559 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~  638 (861)
T d2bpta1         559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE  638 (861)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                                               11224444444443 34566899999999999998887643  26


Q ss_pred             hhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCCC
Q 009632          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRY  527 (530)
Q Consensus       475 ~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~~  527 (530)
                      .++|.+...+++.+..+|..++.+++.++...+..  .+.+.+++.+...+.++.
T Consensus       639 ~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~  693 (861)
T d2bpta1         639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN  693 (861)
T ss_dssp             HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCC
Confidence            78899999999999999999999999998887753  356778888888887764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-20  Score=207.47  Aligned_cols=470  Identities=14%  Similarity=0.167  Sum_probs=327.5

Q ss_pred             cCCchHHHHHHHHHHhcccccCCC--ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHh
Q 009632           57 NDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA  134 (530)
Q Consensus        57 ~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~  134 (530)
                      ...+..+|..+...++.+....|.  ..+...+++.+...+++++..||..|+.+++.++..++++.....+..++..+.
T Consensus       141 ~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~  220 (1207)
T d1u6gc_         141 KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELS  220 (1207)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHc
Confidence            345678888888888777666553  234556777777778889999999999999999999888776666777777777


Q ss_pred             cCCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHH
Q 009632          135 AGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFED  209 (530)
Q Consensus       135 ~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~  209 (530)
                      .+.++..|..+..+++.++...+..   +.+.+++.+...+++++.++|..++.++..+...++.+  .+...+++.+.+
T Consensus       221 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~  300 (1207)
T d1u6gc_         221 KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLK  300 (1207)
T ss_dssp             HTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHH
Confidence            7778888888888888887766553   56789999999999999999999999999999887763  223333333322


Q ss_pred             h-------------------------------------hcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhc
Q 009632          210 L-------------------------------------TQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFS  250 (530)
Q Consensus       210 ~-------------------------------------~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~  250 (530)
                      .                                     ..|..+.+|..+++++..+....+.  ..+...+.|.+...+
T Consensus       301 ~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l  380 (1207)
T d1u6gc_         301 YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF  380 (1207)
T ss_dssp             CCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT
T ss_pred             HHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2                                     2234568999999999999887765  345677899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCcc---------------------cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632          251 QDKSWRVRYMVANQLYELCEAVGPEP---------------------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (530)
Q Consensus       251 ~d~~~~vr~~~~~~l~~l~~~~~~~~---------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  309 (530)
                      .|.++.||..+..++..+....+...                     ....+++.+.+.+.+.++.+|..++..+..+..
T Consensus       381 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         381 KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            99999999999999998887643211                     123467777888899999999999999999988


Q ss_pred             hhCHH--HHHhhhhHhHhHhccCC--cHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhh
Q 009632          310 ILNPE--LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL  382 (530)
Q Consensus       310 ~~~~~--~~~~~l~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  382 (530)
                      ..+..  .+...+++.+...+.+.  ...+|..++..+..+....+.+   .+...+.+.+...+.|..+.++..+..++
T Consensus       461 ~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~  540 (1207)
T d1u6gc_         461 VLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVT  540 (1207)
T ss_dssp             HSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHH
Confidence            76532  23345556665555543  4467777777777776555433   34556777788888888888888888888


Q ss_pred             HHhhhhhch---------hHHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhhChhh-------------------
Q 009632          383 DQVNQVIGI---------DLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF-------------------  432 (530)
Q Consensus       383 ~~l~~~~~~---------~~~~~~l~~~l~~~~~--~~~~~~R~~~~~~l~~l~~~~~~~~-------------------  432 (530)
                      +.+...+++         ......+++.+...+.  +.+..+|..++.+++.+....+...                   
T Consensus       541 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~  620 (1207)
T d1u6gc_         541 QQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI  620 (1207)
T ss_dssp             HHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchh
Confidence            877766542         1122345555544443  3456677777777776655433211                   


Q ss_pred             -----------------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH---HhhhhHHHHHhhccC
Q 009632          433 -----------------------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINN  486 (530)
Q Consensus       433 -----------------------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d  486 (530)
                                             +...+++.+...+.+.+..+|..++.+++.+....+...   ..+.+++.+...+++
T Consensus       621 ~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~  700 (1207)
T d1u6gc_         621 TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISE  700 (1207)
T ss_dssp             HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCT
T ss_pred             hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhcccccc
Confidence                                   123345556666777778888888888888877765432   124455566666778


Q ss_pred             CChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCC
Q 009632          487 PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDR  526 (530)
Q Consensus       487 ~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~  526 (530)
                      .+..++..+...++.+.+..+..  .+...++|.+...+.++
T Consensus       701 ~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~  742 (1207)
T d1u6gc_         701 SDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP  742 (1207)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCT
T ss_pred             ccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCc
Confidence            88888888888888887765532  23455566655555443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-18  Score=183.46  Aligned_cols=513  Identities=16%  Similarity=0.172  Sum_probs=356.6

Q ss_pred             HHHHHHHhcChh--HHHHHHHhhcHHHHHHhhChHhhh---hcccccccc-cc--CCchHHHHHHHHHHhcccccCCC--
Q 009632           11 IAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTR---KELIPFLSE-NN--DDDDEVLLAMAEELGVFIPYVGG--   80 (530)
Q Consensus        11 ~~~l~~~l~~~~--~~~R~~a~~~l~~~~~~~~~~~~~---~~l~~~l~~-~~--d~~~~vr~~~~~~l~~~~~~~~~--   80 (530)
                      +..+++.+.+++  ...|..++..+..+.+.++++...   +.+++.+.+ +.  +.+.++|..+..++.........  
T Consensus       130 i~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~  209 (876)
T d1qgra_         130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  209 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhh
Confidence            667778887655  667999999999998877765443   345555555 32  34678999888888776654432  


Q ss_pred             --ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh---hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC-
Q 009632           81 --VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP-  154 (530)
Q Consensus        81 --~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~-  154 (530)
                        ......++..+....+++++.+|..+++++..+++..++.   .....+.+.+.....++...++..+...+..++. 
T Consensus       210 ~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  289 (876)
T d1qgra_         210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence              2234557777888888999999999999999999877642   2233456666666667766676666555443321 


Q ss_pred             -------------------CC----ChHHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009632          155 -------------------SA----PDILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIM  204 (530)
Q Consensus       155 -------------------~~----~~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~  204 (530)
                                         ..    .......+.+.+.....       +.++.+|.++..++..++...+++. .+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~  368 (876)
T d1qgra_         290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVL  368 (876)
T ss_dssp             HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HHHHH
T ss_pred             HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh-hhhhH
Confidence                               00    11234566666666543       4567899999999999998877644 57788


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc----c
Q 009632          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----T  277 (530)
Q Consensus       205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~  277 (530)
                      +.+.+.+.++++..|.++...++.+.......   .+...+++.+...+.|+++.||..++.+++.+++.++...    .
T Consensus       369 ~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T d1qgra_         369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHH
Confidence            99999999999999999999999988776653   3456688888889999999999999999999998875433    2


Q ss_pred             ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH----------------HHHHhhhhHhHhHhccC---CcHHHHHH
Q 009632          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----------------ELAIQHILPCVKELSSD---SSQHVRSA  338 (530)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----------------~~~~~~l~~~l~~~~~d---~~~~vr~~  338 (530)
                      ...+++.+.+.+.+ ++.++..+..++..+......                ....+.+++.+.....+   .+..++..
T Consensus       449 ~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~  527 (876)
T d1qgra_         449 LAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             hhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHH
Confidence            34567777777765 578999999998888764311                11223444445444432   34567888


Q ss_pred             HHHHHHhhccccCHH------HHHHhHHHHHHHhhcCCC----h-------HHHHHHHHhhHHhhhhhchhHH---HhhH
Q 009632          339 LASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEF----P-------DVRLNIISKLDQVNQVIGIDLL---SQSL  398 (530)
Q Consensus       339 ~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~----~-------~vr~~a~~~l~~l~~~~~~~~~---~~~l  398 (530)
                      +.+.+..+......+      .+...+++.+...+....    .       ..+......+..+....+.+..   .+.+
T Consensus       528 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i  607 (876)
T d1qgra_         528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV  607 (876)
T ss_dssp             HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence            888777765544321      223344555554443221    1       2233444455555555554332   3466


Q ss_pred             HHHHHHHhcC--CChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhHH-
Q 009632          399 LPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWA-  472 (530)
Q Consensus       399 ~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~-  472 (530)
                      ++.+...+..  ++..+|..++.+++.++...+..+  +.+.++|.+...+.+.. ++||..|+.+++.+....+.... 
T Consensus       608 ~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~  687 (876)
T d1qgra_         608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP  687 (876)
T ss_dssp             HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhh
Confidence            7777766553  467899999999999999888655  55789999999887654 67999999999999988776533 


Q ss_pred             -hhhhHHHHHhhccCC--ChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccC
Q 009632          473 -MQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD  525 (530)
Q Consensus       473 -~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D  525 (530)
                       ...+++.+.+.++++  +..+|..++.+++.++...|..  .+.+.++|.+.+..+.
T Consensus       688 ~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~  745 (876)
T d1qgra_         688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQA  745 (876)
T ss_dssp             HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhc
Confidence             367888888888776  4679999999999999988864  3466778877776553

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-19  Score=177.07  Aligned_cols=309  Identities=16%  Similarity=0.130  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHhhhcCc
Q 009632          158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEP  235 (530)
Q Consensus       158 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~  235 (530)
                      ++.+..+.+.+.+.+.++++.+| .++..++.++....+...++.+++.+.+.+.++  +..++..++.++..+....+.
T Consensus        84 ~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~  162 (458)
T d1ibrb_          84 ANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP  162 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG
T ss_pred             HHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccc
Confidence            34445555555555555544333 344555555554444334455555555555432  234555566666655554443


Q ss_pred             h---hhhhccHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhC----CcccccchHHHHHHhcCCCcHHHHHHHHHHHHH
Q 009632          236 Q---DCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVG----PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK  306 (530)
Q Consensus       236 ~---~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  306 (530)
                      .   .....+++.+...+.+  .+..+|..+..++..+.....    .......+.+.+...+.++++++|..++.++..
T Consensus       163 ~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  242 (458)
T d1ibrb_         163 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVK  242 (458)
T ss_dssp             GGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHH
Confidence            2   1233344544444432  345566666666555543221    111122345555555666666666666666666


Q ss_pred             HHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC-----------------------HHHHHHhHH
Q 009632          307 FCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-----------------------KDATIEQLL  360 (530)
Q Consensus       307 ~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-----------------------~~~~~~~l~  360 (530)
                      +++..+..   .+.+.+.+.+.....+.+..++..+++.+..++....                       .......+.
T Consensus       243 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (458)
T d1ibrb_         243 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV  322 (458)
T ss_dssp             HHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            65544321   1111222223333445555566655555554432100                       011122333


Q ss_pred             HHHHHhhc-------CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh--
Q 009632          361 PIFLSLLK-------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--  431 (530)
Q Consensus       361 ~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~--  431 (530)
                      |.+...+.       |.++.+|..+...+..++...|.+ ..+.+++.+.+.+++++|.+|.+++.+++.++.....+  
T Consensus       323 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~  401 (458)
T d1ibrb_         323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL  401 (458)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT
T ss_pred             hhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHH
Confidence            33333322       222344555555555554444432 22344444444445555555555555555544332211  


Q ss_pred             -hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632          432 -FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (530)
Q Consensus       432 -~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  468 (530)
                       .+...++|.+...++|+++.||.+|+.++|.++..++
T Consensus       402 ~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence             1223344455555555555555555555555544443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.7e-18  Score=180.55  Aligned_cols=509  Identities=14%  Similarity=0.103  Sum_probs=336.3

Q ss_pred             HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-c-cC-CchHHHHHHHHHHhcccccCC--------
Q 009632           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N-ND-DDDEVLLAMAEELGVFIPYVG--------   79 (530)
Q Consensus        11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~-~d-~~~~vr~~~~~~l~~~~~~~~--------   79 (530)
                      +-.+++...|+|...|..|-+.|.++...-.|     .++..+.+ + .+ .+..+|..|+..|.+....--        
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~-----~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~   77 (876)
T d1qgra_           3 LITILEKTVSPDRLELEAAQKFLERAAVENLP-----TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (876)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcChh-----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhh
Confidence            56778888899999999999999887654212     33444444 2 22 356799999999987654211        


Q ss_pred             ------CccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC--ccchhHHHHhHhhh
Q 009632           80 ------GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE--WFTARVSACGLFHI  151 (530)
Q Consensus        80 ------~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~r~~~~~~l~~  151 (530)
                            +++....+-..+...+.+++ .+|..++.+++.++..--+...++.++|.+...+.++  ....|..+..+++.
T Consensus        78 ~~~~~i~~~~k~~ik~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~  156 (876)
T d1qgra_          78 QRWLAIDANARREVKNYVLHTLGTET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY  156 (876)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence                  11223334444444555554 4566678889888876433344666888887776554  35678888899988


Q ss_pred             hcCCCChH----HHHHHHHHHHhhcC--CCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhcCCchhHHHH
Q 009632          152 AYPSAPDI----LKTELRSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLL  221 (530)
Q Consensus       152 l~~~~~~~----~~~~l~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~  221 (530)
                      +++...++    +...+++.+...+.  +++..+|..++.++.........    +...+.+++.+...+.++++.+|..
T Consensus       157 i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~  236 (876)
T d1qgra_         157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA  236 (876)
T ss_dssp             HHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            87766543    45778888887664  45678999999999888765543    3344567788888889999999999


Q ss_pred             HHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---------------CCc--------
Q 009632          222 AVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---------------GPE--------  275 (530)
Q Consensus       222 a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---------------~~~--------  275 (530)
                      +.+++..+....++.   ...+.+.+.+.....+....++..+...+..++...               ...        
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (876)
T d1qgra_         237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK  316 (876)
T ss_dssp             HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHH
Confidence            999999999876542   122345566666777888888888887776665421               000        


Q ss_pred             ccccchHHHHHHhcC-------CCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632          276 PTRMDLVPAYVRLLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (530)
Q Consensus       276 ~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~  348 (530)
                      .....++|.+...+.       +.++.+|.++..++..++...+... .+.+++.+.+...+.+|+.|.+++..++.+..
T Consensus       317 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~  395 (876)
T d1qgra_         317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE  395 (876)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHhhccchHHHHHHHHHHHHhhhh
Confidence            012345566555543       2345689999999999998877654 47788888888999999999999999999887


Q ss_pred             ccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH----HHhhHHHHHHHHhcC-------------
Q 009632          349 LLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAED-------------  408 (530)
Q Consensus       349 ~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~~-------------  408 (530)
                      .....   .+...+++.+...+.|+++.||..++.+++.+++.++...    ..+.+++.+...+.+             
T Consensus       396 ~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~  475 (876)
T d1qgra_         396 GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS  475 (876)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            76643   4566888999999999999999999999999987654321    112222322222211             


Q ss_pred             --------------------------------------------CChHHHHHHHHHHHHHHhhh----------------
Q 009632          409 --------------------------------------------RHWRVRLAIIEYIPLLASQL----------------  428 (530)
Q Consensus       409 --------------------------------------------~~~~~R~~~~~~l~~l~~~~----------------  428 (530)
                                                                  ....+|..++..+..+....                
T Consensus       476 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  555 (876)
T d1qgra_         476 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIM  555 (876)
T ss_dssp             HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence                                                        12234444444333332211                


Q ss_pred             ----------------------------------------Chhh---HHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHH
Q 009632          429 ----------------------------------------GVGF---FDDKLGALCMQWLQ--DKVYSIRDAAANNLKRL  463 (530)
Q Consensus       429 ----------------------------------------~~~~---~~~~~~~~l~~~l~--d~~~~Vr~~a~~~l~~l  463 (530)
                                                              +.+.   +.+.+++.+...+.  ++...++..++.+++.+
T Consensus       556 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l  635 (876)
T d1qgra_         556 ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTL  635 (876)
T ss_dssp             HHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence                                                    1000   01234444444443  34556788888888888


Q ss_pred             HHHhChhHH--hhhhHHHHHhhccCC-ChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCC
Q 009632          464 AEEFGPEWA--MQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDR  526 (530)
Q Consensus       464 ~~~~~~~~~--~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~  526 (530)
                      +...|..+.  ...++|.+...+++. ++.+|..++..++.+....+..  .+.+.+++.+...++|+
T Consensus       636 ~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~  703 (876)
T d1qgra_         636 VEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE  703 (876)
T ss_dssp             HHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCT
T ss_pred             HHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCc
Confidence            887776543  256777777776554 5678888888888887766543  34667777777777664

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.5e-18  Score=167.69  Aligned_cols=405  Identities=16%  Similarity=0.167  Sum_probs=277.0

Q ss_pred             chhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChHHHHHHH
Q 009632           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELR  165 (530)
Q Consensus        87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~l~  165 (530)
                      ++.+|..+. ++|..+|..|-+.|..+.+.-++    .++..++.-+.++. ...+|..|+..+.........       
T Consensus         2 l~~il~~~~-s~d~~~r~~A~~~L~~~~~~~~~----~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~-------   69 (458)
T d1ibrb_           2 LITILEKTV-SPDRLELEAAQKFLERAAVENLP----TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-------   69 (458)
T ss_dssp             HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-------
T ss_pred             HHHHHHHHh-CcCHHHHHHHHHHHHHHHhcCch----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCc-------
Confidence            445565555 67899999999999998775322    23333333333333 345676666655443333221       


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHH
Q 009632          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV  245 (530)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  245 (530)
                                  ..+........    .++ +.....+.+.+.+.+.+++..+| .+..++..++....+...++.+++.
T Consensus        70 ------------~~~~~~~~~~~----~l~-~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~  131 (458)
T d1ibrb_          70 ------------DIKAQYQQRWL----AID-ANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQ  131 (458)
T ss_dssp             ------------HHHHHHHHHHH----TSC-HHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHH
T ss_pred             ------------hhhhHHhhhhc----cCC-HHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHH
Confidence                        11111111111    111 22334566777777777765544 4566777777665555557778888


Q ss_pred             HHHhcCC--CCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCC--CcHHHHHHHHHHHHHHHHhhCH----H
Q 009632          246 IVNFSQD--KSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNP----E  314 (530)
Q Consensus       246 l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~----~  314 (530)
                      +.+.+.+  .++.+|..++.+++.+........   ....+++.+.+.+.+  .+.++|..+++++..+......    .
T Consensus       132 l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~  211 (458)
T d1ibrb_         132 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE  211 (458)
T ss_dssp             HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            8887654  567889999999999988766543   244678888888864  4578999999999988764432    2


Q ss_pred             HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 009632          315 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  391 (530)
Q Consensus       315 ~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  391 (530)
                      .....+.+.+.....+.++.+|..+++.+..+++..+..   ...+.+.+.+.....+.+..++..++..+..++.....
T Consensus       212 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~  291 (458)
T d1ibrb_         212 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD  291 (458)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            344567778888889999999999999999887655421   12333455566777888999999999988887653210


Q ss_pred             -----------------------hHHHhhHHHHHHHHhc-------CCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHH
Q 009632          392 -----------------------DLLSQSLLPAIVELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC  441 (530)
Q Consensus       392 -----------------------~~~~~~l~~~l~~~~~-------~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l  441 (530)
                                             ....+.+.|.+.+...       +.+|.+|..+..++..++...|.+. .+.++|.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~l~~~i  370 (458)
T d1ibrb_         292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFI  370 (458)
T ss_dssp             HHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH-HHHHHHHH
T ss_pred             HHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh-hhHHHHHH
Confidence                                   1123455566555533       3468899999999999999888654 56799999


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHhChhH---HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHH-hhHHH
Q 009632          442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC-SRLLP  517 (530)
Q Consensus       442 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~-~~~~p  517 (530)
                      .+.++++++.+|.+|+.+++.++...+...   ....++|.+...++|++..||..|+++++++++.++..... .++.|
T Consensus       371 ~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~  450 (458)
T d1ibrb_         371 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP  450 (458)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHH
Confidence            999999999999999999999886543322   23678999999999999999999999999999988754433 33444


Q ss_pred             HHHhh
Q 009632          518 VVINA  522 (530)
Q Consensus       518 ~l~~~  522 (530)
                      .+..+
T Consensus       451 ll~~l  455 (458)
T d1ibrb_         451 LLQCL  455 (458)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.9e-16  Score=155.03  Aligned_cols=446  Identities=12%  Similarity=0.046  Sum_probs=279.0

Q ss_pred             cCCchHHHHHHHHHHhcccccCCCcc-c--hhcchhHHHhhhc-ccchHHHHHHHHHHHHHHhhcCh--hhhhhhHHHHH
Q 009632           57 NDDDDEVLLAMAEELGVFIPYVGGVE-H--AHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLV  130 (530)
Q Consensus        57 ~d~~~~vr~~~~~~l~~~~~~~~~~~-~--~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l  130 (530)
                      .+++.++|..++..+++++..-.... .  ...+++.+..++. ..+..+++.|+.+|..++..-..  .......+|.+
T Consensus        27 ~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L  106 (529)
T d1jdha_          27 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL  106 (529)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHH
Confidence            34445555555555555443110000 0  1123444444443 34566777777777776542211  11222345666


Q ss_pred             HHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHH
Q 009632          131 KRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDI  203 (530)
Q Consensus       131 ~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l  203 (530)
                      ..+++++++.++..++..++.++......    .....++.+..+++++++.++..++.++..++..-..   .......
T Consensus       107 i~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  186 (529)
T d1jdha_         107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG  186 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhccc
Confidence            66666677777777777776665433321    2345678888899999999999999999998754222   1122335


Q ss_pred             HHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccc
Q 009632          204 MSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD  280 (530)
Q Consensus       204 ~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  280 (530)
                      ++.+..++.. +...++..+..++..++..-..  .......++.+..++.+.+..++..++.++..+............
T Consensus       187 ~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~  266 (529)
T d1jdha_         187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG  266 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHH
T ss_pred             chHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhh
Confidence            6666666644 4467888888888888753222  112344678888889999999999999999988765444444567


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhc--cCCcHHHHHHHHHHHHhhccccCHHHH
Q 009632          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDAT  355 (530)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~~  355 (530)
                      .++.+.+++.+++++++..++.++..++..-...   ......++.+...+  ...++.++..++..+..++........
T Consensus       267 ~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~  346 (529)
T d1jdha_         267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM  346 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH
T ss_pred             cchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchh
Confidence            8999999999999999999999998886421111   11123344444433  345677888888888887754432211


Q ss_pred             ------HHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhchh-HH-HhhHHHHHHHHhcCCC----------------
Q 009632          356 ------IEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGID-LL-SQSLLPAIVELAEDRH----------------  410 (530)
Q Consensus       356 ------~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~-~~-~~~l~~~l~~~~~~~~----------------  410 (530)
                            ....++.+..++.++ +..++..++..+..+...-... .+ ....++.+.+++.+.+                
T Consensus       347 ~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~  426 (529)
T d1jdha_         347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF  426 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------C
T ss_pred             hhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHh
Confidence                  224467788888765 4567788888887776432211 11 1235555555543322                


Q ss_pred             ------hHHHHHHHHHHHHHHhhhChhhH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh--HHhhhhHHHH
Q 009632          411 ------WRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQV  480 (530)
Q Consensus       411 ------~~~R~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l  480 (530)
                            ..++..++.++..++........  ....++.+..++.++++++|..++.+|..+...-...  ......++.+
T Consensus       427 ~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L  506 (529)
T d1jdha_         427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL  506 (529)
T ss_dssp             BTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred             hcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHH
Confidence                  23445555566555432221111  1235778999999999999999999998876331111  1235578899


Q ss_pred             HhhccCCChHHHHHHHHHHHHH
Q 009632          481 LEMINNPHYLYRMTILRAISLL  502 (530)
Q Consensus       481 ~~~~~d~~~~vr~~a~~~l~~i  502 (530)
                      .+++.++|..+|..+..++..+
T Consensus       507 ~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         507 TELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999876

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.4e-16  Score=153.99  Aligned_cols=456  Identities=13%  Similarity=0.060  Sum_probs=308.7

Q ss_pred             cCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhh---hhcccccccc-c-cCCchHHHHHHHHHHhcccccCCCcc
Q 009632            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSE-N-NDDDDEVLLAMAEELGVFIPYVGGVE   82 (530)
Q Consensus         8 ~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~-~-~d~~~~vr~~~~~~l~~~~~~~~~~~   82 (530)
                      -.++..|+.-|+++|...|..|+..+.+++..-.....   ...+++.+.. + ..++++++..++.+|..+...-....
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence            34688999999999999999999999998754221111   1245666655 3 34578899999999988865211111


Q ss_pred             --chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC
Q 009632           83 --HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (530)
Q Consensus        83 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~  157 (530)
                        .....+|.|..++.++++.++..|+.+|..++...+...   .....+|.+..++++++..++..++.++..+...-.
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  175 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence              122346788888889999999999999999988765422   234467788888888888999999999988875533


Q ss_pred             hH----HHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 009632          158 DI----LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (530)
Q Consensus       158 ~~----~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~  230 (530)
                      ..    .....++.+..++. .+.+.++..++.++..++..-..  .......++.+..++.+++..++..++.++..+.
T Consensus       176 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls  255 (529)
T d1jdha_         176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcc
Confidence            22    12224555555553 45678999999999887653222  2233457788999999999999999999999887


Q ss_pred             hhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhc--CCCcHHHHHHHHHHHH
Q 009632          231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLL--RDNEAEVRIAAAGKVT  305 (530)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~  305 (530)
                      ............++.+.+++.+.+..++..++.+++.++..-..   .......++.+.+.+  ..+.++++..++.++.
T Consensus       256 ~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~  335 (529)
T d1jdha_         256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR  335 (529)
T ss_dssp             TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhh
Confidence            66554444456889999999999999999999999888632110   011234566666665  3455789999999998


Q ss_pred             HHHHhhCHH------HHHhhhhHhHhHhccC-CcHHHHHHHHHHHHhhccccCH-H-HHHHhHHHHHHHhhcCCCh----
Q 009632          306 KFCRILNPE------LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGK-D-ATIEQLLPIFLSLLKDEFP----  372 (530)
Q Consensus       306 ~~~~~~~~~------~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~----  372 (530)
                      .++......      ......++.+..++.+ .++.++..++..+..++..-.. . ......+|.+..++.+...    
T Consensus       336 ~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~  415 (529)
T d1jdha_         336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR  415 (529)
T ss_dssp             HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred             cccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHH
Confidence            887443221      1123345566666554 5567788888888877654321 1 1223456666666654332    


Q ss_pred             ------------------HHHHHHHHhhHHhhhhhchhHH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh-h
Q 009632          373 ------------------DVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-G  431 (530)
Q Consensus       373 ------------------~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~-~  431 (530)
                                        +++..++.++..+.........  ....++.|..++.+++..+|..++.++..++..-.. +
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~  495 (529)
T d1jdha_         416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE  495 (529)
T ss_dssp             ----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHH
Confidence                              3444455555544432211111  134678899999999999999999999988643211 1


Q ss_pred             h-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632          432 F-FDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (530)
Q Consensus       432 ~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  463 (530)
                      . .....++.+.+++.++++.||..|+.+|..+
T Consensus       496 ~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            1 1233678899999999999999999999875

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=8.2e-16  Score=148.61  Aligned_cols=384  Identities=12%  Similarity=0.085  Sum_probs=256.6

Q ss_pred             hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHH
Q 009632           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL  164 (530)
Q Consensus        85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l  164 (530)
                      ..-+.-+...+.++++..+..|+.++.++.+..........                                  ....+
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i----------------------------------~~~g~   57 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI----------------------------------IRAGL   57 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHH----------------------------------HHTTC
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHH----------------------------------HHCCC
Confidence            33333444456666777777777777777553322111000                                  01124


Q ss_pred             HHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hh
Q 009632          165 RSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QD  237 (530)
Q Consensus       165 ~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~  237 (530)
                      +|.+.+++.+ +++++|..++.+|..++..-..   .......+|.+.+++.+++..++..|+.++..++..-..   ..
T Consensus        58 i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  137 (434)
T d1q1sc_          58 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV  137 (434)
T ss_dssp             HHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHH
Confidence            5566666643 3567777777777777643222   122345677777888877788888888888777643221   11


Q ss_pred             hhhccHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632          238 CVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  309 (530)
Q Consensus       238 ~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  309 (530)
                      .....++.+..++...+     ......++.++..+.......   .....++|.+..++.+++++++..++.++..++.
T Consensus       138 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~  217 (434)
T d1q1sc_         138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD  217 (434)
T ss_dssp             HHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred             HHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccch
Confidence            23345666666654332     122333444555544322111   1234678999999999999999999999998865


Q ss_pred             hhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhH
Q 009632          310 ILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (530)
Q Consensus       310 ~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  383 (530)
                      ..+..   .....++|.+.+++.+.++.++..++..+..++..-..   ......+++.+..++++++.++|..++.++.
T Consensus       218 ~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~  297 (434)
T d1q1sc_         218 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS  297 (434)
T ss_dssp             SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred             hhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHh
Confidence            42211   12345788888889999999999999999988753221   1223456778899999999999999999999


Q ss_pred             Hhhhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH----HHHHHHHHHHHhcCCcHHHHHHH
Q 009632          384 QVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDAA  456 (530)
Q Consensus       384 ~l~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~Vr~~a  456 (530)
                      .++.....   ......++|.+...+.++++.+|..++.+++.++...+.+..    ...+++.+..++.+++++++..+
T Consensus       298 ~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~  377 (434)
T d1q1sc_         298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI  377 (434)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHH
T ss_pred             hhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHH
Confidence            98753221   122356889999999999999999999999999877665432    23358889999999999999999


Q ss_pred             HHHHHHHHHHhC----hhHH-----hhhhHHHHHhhccCCChHHHHHHHHHHHHH
Q 009632          457 ANNLKRLAEEFG----PEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLL  502 (530)
Q Consensus       457 ~~~l~~l~~~~~----~~~~-----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i  502 (530)
                      +.++..+.+...    .+..     ....++.+..+.+++|.++|..|.+.+.+.
T Consensus       378 l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         378 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            999999886542    1111     123566777788899999999999988754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.1e-15  Score=145.75  Aligned_cols=380  Identities=12%  Similarity=0.084  Sum_probs=262.1

Q ss_pred             cccccccccCCchHHHHHHHHHHhcccccCCCcc---c-hhcchhHHHhhhcc-cchHHHHHHHHHHHHHHhhcChhhhh
Q 009632           49 LIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE---H-AHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLV  123 (530)
Q Consensus        49 l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~---~-~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~  123 (530)
                      +-+.+..+.+++++.+..++.++.++...-..+.   . ...++|.|.+++++ +++.+|..++.+|..++..-+...  
T Consensus        15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~--   92 (434)
T d1q1sc_          15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT--   92 (434)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH--
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh--
Confidence            3344444788999999999999998866433221   1 23477788887754 467888888888888875432210  


Q ss_pred             hhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhH
Q 009632          124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLK  200 (530)
Q Consensus       124 ~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~  200 (530)
                      ..+                                 .....+|.+..++.++++.++..++.+|++++..-+.   ....
T Consensus        93 ~~i---------------------------------~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  139 (434)
T d1q1sc_          93 KAV---------------------------------VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK  139 (434)
T ss_dssp             HHH---------------------------------HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHh---------------------------------hhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            000                                 0122566777788888888999988888888753222   1222


Q ss_pred             HHHHHHHHHhhcCCch-----hHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 009632          201 TDIMSIFEDLTQDDQD-----SVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV  272 (530)
Q Consensus       201 ~~l~~~l~~~~~d~~~-----~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  272 (530)
                      ...++.+..++...+.     .....+..++..++.....   ......++|.+..++.+.++.++..++.+++.++...
T Consensus       140 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~  219 (434)
T d1q1sc_         140 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP  219 (434)
T ss_dssp             TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred             hhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhh
Confidence            3455666666654432     1223344455555543322   1234557888888899889999999999988876431


Q ss_pred             CC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhh
Q 009632          273 GP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGM  346 (530)
Q Consensus       273 ~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l  346 (530)
                      ..   ......++|.+.+++++++++++..++.++..++..-+.   ..+...+++.+..++.+++..+|..++..+..+
T Consensus       220 ~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l  299 (434)
T d1q1sc_         220 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI  299 (434)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhh
Confidence            11   112345789999999999999999999999988753211   123356677888889999999999999999988


Q ss_pred             ccccCH--H-HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH----HhhHHHHHHHHhcCCChHHHHHHHH
Q 009632          347 APLLGK--D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIE  419 (530)
Q Consensus       347 ~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~~~~~~~R~~~~~  419 (530)
                      +.....  . .....++|.+..++.++++.+|..++.++..+....+.+..    ...+++.|.+++.++++.++..++.
T Consensus       300 ~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~  379 (434)
T d1q1sc_         300 TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD  379 (434)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHH
T ss_pred             ccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHH
Confidence            764321  1 22345789999999999999999999999998876554432    2456888999999999999999999


Q ss_pred             HHHHHHhhhC----hhhHHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632          420 YIPLLASQLG----VGFFDD-----KLGALCMQWLQDKVYSIRDAAANNLKRL  463 (530)
Q Consensus       420 ~l~~l~~~~~----~~~~~~-----~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  463 (530)
                      ++..+.+...    ...+..     .+++.+..+..+++.+||..|.+.+...
T Consensus       380 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         380 AISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9998876432    112222     2456677788889999999999987543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=7.8e-15  Score=144.51  Aligned_cols=342  Identities=12%  Similarity=0.082  Sum_probs=251.6

Q ss_pred             HHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--
Q 009632          162 TELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--  235 (530)
Q Consensus       162 ~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--  235 (530)
                      ..++|.+..++. +.++.++..++.+|..++..-..   ......++|.+.+++.+++..++..|+.+++.++.....  
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r  197 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  197 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence            345677777775 45677888898888888753222   122344788888889888889999999999988754322  


Q ss_pred             -hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632          236 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (530)
Q Consensus       236 -~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  311 (530)
                       ......+++.+..++.+.+..++..++.++..++......   .....++|.+..++.+++++++..++.++..++...
T Consensus       198 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~  277 (503)
T d1wa5b_         198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  277 (503)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence             1223457888889999988899999999999988643221   124568999999999999999999999999887532


Q ss_pred             CHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHh
Q 009632          312 NPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (530)
Q Consensus       312 ~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  385 (530)
                      ...   .....+++.+..++.+.++.++..++..++.++...+..   .....+++.+..+++++++.+|..++.++.++
T Consensus       278 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl  357 (503)
T d1wa5b_         278 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI  357 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            211   233567788888899999999999999999988643321   12335789999999999999999999999998


Q ss_pred             hhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh--hh----HHHHHHHHHHHHhcCCcHHHHHHH
Q 009632          386 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GF----FDDKLGALCMQWLQDKVYSIRDAA  456 (530)
Q Consensus       386 ~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~--~~----~~~~~~~~l~~~l~d~~~~Vr~~a  456 (530)
                      +..-..   ......++|.+...+.+.++.+|..++.++..++.....  +.    ....+++.+..++...+..+...+
T Consensus       358 ~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~  437 (503)
T d1wa5b_         358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT  437 (503)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred             hhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHH
Confidence            753211   112356888999999999999999999999999875432  21    123467888999998899999999


Q ss_pred             HHHHHHHHHHhChh--------------HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632          457 ANNLKRLAEEFGPE--------------WAMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (530)
Q Consensus       457 ~~~l~~l~~~~~~~--------------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~  503 (530)
                      +.++..+.......              ......+..+..+.++++.+++..|...+..+.
T Consensus       438 L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f  498 (503)
T d1wa5b_         438 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF  498 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            99988877532110              001234556666777889999988888776553

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3.7e-14  Score=139.62  Aligned_cols=377  Identities=13%  Similarity=0.072  Sum_probs=273.5

Q ss_pred             cchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChH-
Q 009632           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-  159 (530)
Q Consensus        86 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~-  159 (530)
                      ..++-+....++++...+..|+..+.++...-..    ..+...++|.+..+++.+ +..++..++.++..++...... 
T Consensus        76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~  155 (503)
T d1wa5b_          76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  155 (503)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            3445555566777888888888888887643221    123344677777777644 5678999999999888654432 


Q ss_pred             ---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632          160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (530)
Q Consensus       160 ---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  233 (530)
                         ....+++.+..++.+++.+++..++.++++++.....   ......+++.+..++.+.+..++..++.++..++...
T Consensus       156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~  235 (503)
T d1wa5b_         156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  235 (503)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence               2234678888999999999999999999999864322   1223457788899999999999999999999998754


Q ss_pred             Cc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 009632          234 EP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  307 (530)
Q Consensus       234 ~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  307 (530)
                      .+   ......++|.+..++.+.++.++..++.++..++.....   ......+++.+..++.++++.++..++.+++.+
T Consensus       236 ~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl  315 (503)
T d1wa5b_         236 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI  315 (503)
T ss_dssp             SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHH
Confidence            33   234567899999999999999999999999988743211   112346788899999999999999999999988


Q ss_pred             HHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHh
Q 009632          308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK  381 (530)
Q Consensus       308 ~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  381 (530)
                      +...+..   .....+++.+..++.++++.+|..++.+++.++..-..   ......++|.+...+.+.+..++..++.+
T Consensus       316 ~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~  395 (503)
T d1wa5b_         316 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA  395 (503)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHH
Confidence            7533221   12245678888899999999999999999988753211   12235678999999999999999999999


Q ss_pred             hHHhhhhhch--hH----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh---------hhHH-----HHHHHHH
Q 009632          382 LDQVNQVIGI--DL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFD-----DKLGALC  441 (530)
Q Consensus       382 l~~l~~~~~~--~~----~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~---------~~~~-----~~~~~~l  441 (530)
                      +.++......  +.    ....+++.+.+++...+..+...++.++..+......         ..+.     ...+..+
T Consensus       396 l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i  475 (503)
T d1wa5b_         396 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI  475 (503)
T ss_dssp             HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHH
Confidence            9998754321  11    1345788899999888999999999988887643211         1111     1234445


Q ss_pred             HHHhcCCcHHHHHHHHHHHHH
Q 009632          442 MQWLQDKVYSIRDAAANNLKR  462 (530)
Q Consensus       442 ~~~l~d~~~~Vr~~a~~~l~~  462 (530)
                      ..+..+++..|+..|.+.+..
T Consensus       476 ~~Lq~~~~~~i~~~A~~il~~  496 (503)
T d1wa5b_         476 FNCQQNENDKIYEKAYKIIET  496 (503)
T ss_dssp             HGGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHH
Confidence            556667888898888887644

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.1e-14  Score=131.22  Aligned_cols=250  Identities=18%  Similarity=0.112  Sum_probs=155.1

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH-
Q 009632          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP-  244 (530)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-  244 (530)
                      +.+.++++|+++.||..|+.+|+.+..        +..+|.+.+++.|+++.||..|+.+|+.+.......   +...+ 
T Consensus        22 ~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~~~~~   90 (276)
T d1oyza_          22 DELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DNVFNI   90 (276)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cchHHH
Confidence            456678889999999999998887632        456788888888998899999888888775433221   11222 


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhH
Q 009632          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV  324 (530)
Q Consensus       245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l  324 (530)
                      .+..+++|+++.||..++.+++.+...-.  .....+++.+...+.|+++.||..++.+++.+..        +..++.+
T Consensus        91 l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~~l  160 (276)
T d1oyza_          91 LNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLL  160 (276)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHH
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHHHH
Confidence            23445677888888888888887765421  1224567777777778878888777776655432        2334555


Q ss_pred             hHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHH
Q 009632          325 KELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  404 (530)
Q Consensus       325 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  404 (530)
                      ..+..+.++.++..+...+.......      ....+.+...+.+.+..+|..+..+++.+..        +..+|.+.+
T Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~~~~L~~  226 (276)
T d1oyza_         161 INLLKDPNGDVRNWAAFAININKYDN------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLCD  226 (276)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTCCC------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHHH
T ss_pred             HHhcccccchhhhhHHHHHHhhhccc------cccchhhhhhhhhhhhhhhhhhccccchhhh--------hhhHHHHHH
Confidence            56666777777766665555443221      1233445566667777777777666655421        234555555


Q ss_pred             HhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC-CcHHHHHHHHHHH
Q 009632          405 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNL  460 (530)
Q Consensus       405 ~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l  460 (530)
                      .+.+++  +|..++.+++.++    .    +..+|.+..++.+ ++..||..|++.|
T Consensus       227 ~l~d~~--vr~~a~~aL~~ig----~----~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         227 ELKKNT--VYDDIIEAAGELG----D----KTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             HHTSSS--CCHHHHHHHHHHC----C----GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             HhCChH--HHHHHHHHHHHcC----C----HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            555433  5666666666553    1    1244555555543 3556676666665

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.5e-13  Score=122.09  Aligned_cols=248  Identities=19%  Similarity=0.190  Sum_probs=139.9

Q ss_pred             HHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHH-HHHH
Q 009632          131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS-IFED  209 (530)
Q Consensus       131 ~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~-~l~~  209 (530)
                      ..+++|+++.+|..|+..++....       +..++.+..+++|+++.||..++.+|+.+......   .+...+ .+..
T Consensus        25 ~~~L~d~~~~vR~~A~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~---~~~~~~~l~~~   94 (276)
T d1oyza_          25 FRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC---EDNVFNILNNM   94 (276)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT---HHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHhhCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc---ccchHHHHHHH
Confidence            344444555555555554444321       23455566666677777777777776665322111   122222 2333


Q ss_pred             hhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc
Q 009632          210 LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL  289 (530)
Q Consensus       210 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  289 (530)
                      +++|+++.||..++.+++.++...+  .....+++.+...+.|.++.||..++..++.+.        ....++.+..++
T Consensus        95 ~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~--------~~~~~~~l~~l~  164 (276)
T d1oyza_          95 ALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN--------DKATIPLLINLL  164 (276)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHH
T ss_pred             HhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc--------hHHHHHHHHHhc
Confidence            4566677777777777766655432  123446666666777777777776666555433        133456666677


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC
Q 009632          290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD  369 (530)
Q Consensus       290 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  369 (530)
                      .+.++.++..+..++..+...  .    ....+.+.....+.++.+|..++..++.+..        ...+|.+...++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~~~~L~~~l~d  230 (276)
T d1oyza_         165 KDPNGDVRNWAAFAININKYD--N----SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLCDELKK  230 (276)
T ss_dssp             TCSSHHHHHHHHHHHHHHTCC--C----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHHHHHTS
T ss_pred             ccccchhhhhHHHHHHhhhcc--c----cccchhhhhhhhhhhhhhhhhhccccchhhh--------hhhHHHHHHHhCC
Confidence            777777777666655544321  1    1223444455567777777777766665432        2345566666665


Q ss_pred             CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC-CChHHHHHHHHHHH
Q 009632          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIP  422 (530)
Q Consensus       370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~  422 (530)
                      +  .||..++.+|+.+..        +..+|.+..++.+ +++.+|..|++.|.
T Consensus       231 ~--~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         231 N--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             S--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             h--HHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            4  477777777776532        3466666665554 46778877777653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=6.3e-09  Score=110.07  Aligned_cols=492  Identities=11%  Similarity=0.038  Sum_probs=279.9

Q ss_pred             HHHHHhcC--hhHHHHHHHhhcHHHHHHhh-C--------hHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCC
Q 009632           13 VLIDELKN--DDIQLRLNSIRRLSTIARAL-G--------EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG   80 (530)
Q Consensus        13 ~l~~~l~~--~~~~~R~~a~~~l~~~~~~~-~--------~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~   80 (530)
                      .|++-+.+  .+...|+.|...++...... .        ++..+..+...+.+ +.+++..+|..++.+++.++..=. 
T Consensus        39 ~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~-  117 (959)
T d1wa5c_          39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF-  117 (959)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC-
Confidence            34444443  35678999988888755432 1        12223333333333 345677899999999998887433 


Q ss_pred             ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh----h-------hhhhHHHHHHHHh--------cCCccch
Q 009632           81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES----D-------LVDWYIPLVKRLA--------AGEWFTA  141 (530)
Q Consensus        81 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~-------~~~~l~~~l~~l~--------~~~~~~~  141 (530)
                      ++.|+.+++.+.+.+++++...+..++.++..+++.+...    .       ....+.+.+..+.        .......
T Consensus       118 p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  197 (959)
T d1wa5c_         118 PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKA  197 (959)
T ss_dssp             TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CH
T ss_pred             ccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence            4678899999999999889999999999999999865421    1       1111222222221        1111111


Q ss_pred             hH--------HHHhHhhhhc-CCCCh---HHHHHHHHHHHhhcCCCC---------------hhHHHHHHHHHHHHHhhh
Q 009632          142 RV--------SACGLFHIAY-PSAPD---ILKTELRSIYTQLCQDDM---------------PMVRRSAASNLGKFAATV  194 (530)
Q Consensus       142 r~--------~~~~~l~~l~-~~~~~---~~~~~l~~~l~~l~~d~~---------------~~vR~~a~~~l~~l~~~~  194 (530)
                      ..        .....+..+. .....   +....+.+.+..++....               ..+|...+..+..+.+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  277 (959)
T d1wa5c_         198 SLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRY  277 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            10        1111111111 12222   133444455554443211               257788888888877765


Q ss_pred             cc--hhhHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHhhhcCch------hhhh-----ccHHHHHH--------
Q 009632          195 EP--AHLKTDIMSIFEDLTQ-----DDQDSVRLLAVEGCAALGKLLEPQ------DCVA-----HILPVIVN--------  248 (530)
Q Consensus       195 ~~--~~~~~~l~~~l~~~~~-----d~~~~vr~~a~~~l~~l~~~~~~~------~~~~-----~~~~~l~~--------  248 (530)
                      +.  ..+.+.+++.+.+.+.     ...+.+...+++.+..+.......      ....     .+.|.+.-        
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~  357 (959)
T d1wa5c_         278 EDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELF  357 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            44  1223334444333332     224556667777776665532210      1111     12222210        


Q ss_pred             -----------hcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc------CCCcHHHHHHHHHHHHHHHHhh
Q 009632          249 -----------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL------RDNEAEVRIAAAGKVTKFCRIL  311 (530)
Q Consensus       249 -----------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~~~~~~  311 (530)
                                 .-.+..+..|.++...+..++...++.. ...+.+.+.+.+      .+.++..+.+++..++.+....
T Consensus       358 ~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~  436 (959)
T d1wa5c_         358 EDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING  436 (959)
T ss_dssp             TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred             hcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhh
Confidence                       0011233467788888888877654322 223334333333      2456888999998888876432


Q ss_pred             CH-----------HHHHhhhhHhHhH---hccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHH
Q 009632          312 NP-----------ELAIQHILPCVKE---LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN  377 (530)
Q Consensus       312 ~~-----------~~~~~~l~~~l~~---~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~  377 (530)
                      +.           ..+.+.+.+.+..   ...+....+|..++..++.++.....+ ....+++.+...|+|++..||..
T Consensus       437 ~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~-~~~~~~~~l~~~L~~~~~~V~~~  515 (959)
T d1wa5c_         437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTY  515 (959)
T ss_dssp             CCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHhCCCchhHHHH
Confidence            10           0111222222222   224556789999999999998877654 45788999999999999999999


Q ss_pred             HHHhhHHhhhhhch----------hH---HHhhHHHHHHHHhcCCC--h---HHHHHHHHHHHHHHhhhChhh--HHHHH
Q 009632          378 IISKLDQVNQVIGI----------DL---LSQSLLPAIVELAEDRH--W---RVRLAIIEYIPLLASQLGVGF--FDDKL  437 (530)
Q Consensus       378 a~~~l~~l~~~~~~----------~~---~~~~l~~~l~~~~~~~~--~---~~R~~~~~~l~~l~~~~~~~~--~~~~~  437 (530)
                      |+.++..++.....          +.   ..+.++..+...+.+..  .   ..+..++.++..+....+...  +...+
T Consensus       516 a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i  595 (959)
T d1wa5c_         516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQL  595 (959)
T ss_dssp             HHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHH
T ss_pred             HHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998864321          11   12344444544443332  1   123457778888877776432  33444


Q ss_pred             HHHHHH----HhcC-CcHHHHHHHHHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632          438 GALCMQ----WLQD-KVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       438 ~~~l~~----~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~  507 (530)
                      ++.+..    ..++ .....+..+.++++.+....++...   .+.++|.+...++.........+...+..+....+
T Consensus       596 ~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         596 LAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCC
Confidence            444443    3333 3466788888999999887765432   26678888877776666667778888877766543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.32  E-value=3.4e-13  Score=114.80  Aligned_cols=183  Identities=22%  Similarity=0.229  Sum_probs=129.9

Q ss_pred             hhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHh
Q 009632          170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF  249 (530)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  249 (530)
                      ..+.|+.|+||..|+.       +.+.        ..+..+++|+++.||..+++.+       +.        +.+..+
T Consensus        49 ~~l~~p~~e~Ra~Aa~-------~a~~--------~~L~~Ll~D~d~~VR~~AA~~L-------p~--------~~L~~L   98 (233)
T d1lrva_          49 QYLADPFWERRAIAVR-------YSPV--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSAL   98 (233)
T ss_dssp             GGTTCSSHHHHHHHHT-------TSCG--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGT
T ss_pred             HHhcCCcHHHHHHHHh-------cCCH--------HHHHHHhcCCCHHHHHHHHHHc-------CH--------HHHHHH
Confidence            4677999999977653       2221        2445688999999999987654       21        346677


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632          250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (530)
Q Consensus       250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~  329 (530)
                      ..|+++.||..++..+       +        .+.+..+++|+++.||..+++.+       +        .+.+..+++
T Consensus        99 ~~D~d~~VR~~aa~~l-------~--------~~~L~~Ll~D~d~~VR~~aa~~~-------~--------~~~L~~L~~  148 (233)
T d1lrva_          99 MFDEDREVRITVADRL-------P--------LEQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRFMR  148 (233)
T ss_dssp             TTCSCHHHHHHHHHHS-------C--------TGGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGTTT
T ss_pred             hcCCChhHHHHHHhcc-------C--------HHHHHHHhcCCCHHHHHHHHhcc-------c--------hhHHHHHhc
Confidence            8899999998887543       1        13456678899999999887642       1        234556678


Q ss_pred             CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC
Q 009632          330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  409 (530)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~  409 (530)
                      |+++.||..++..+       +        .+.+..+++|+++.||..++..++.               +.+..+++|+
T Consensus       149 D~d~~VR~~aA~~~-------~--------~~~L~~l~~D~d~~VR~~aa~~L~~---------------~~L~~l~~D~  198 (233)
T d1lrva_         149 DEDRQVRKLVAKRL-------P--------EESLGLMTQDPEPEVRRIVASRLRG---------------DDLLELLHDP  198 (233)
T ss_dssp             CSCHHHHHHHHHHS-------C--------GGGGGGSTTCSSHHHHHHHHHHCCG---------------GGGGGGGGCS
T ss_pred             CCCHHHHHHHHHhc-------C--------HHHHHHHccCCCHHHHHHHHHhcCc---------------HHHHHHHhCC
Confidence            99999998887632       2        1446778889999999998877641               2345677899


Q ss_pred             ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 009632          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN  458 (530)
Q Consensus       410 ~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~  458 (530)
                      +|.+|..+++.+       +         +.++..|.|+++.||..+++
T Consensus       199 d~~VR~aaae~~-------~---------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         199 DWTVRLAAVEHA-------S---------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SHHHHHHHHHHS-------C---------HHHHHHCCCCCHHHHHHHHC
T ss_pred             CHHHHHHHHHhc-------c---------HHHHHHhCCCCHHHHHHHHH
Confidence            999998886432       2         23456778999999998875

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.23  E-value=1.6e-12  Score=110.56  Aligned_cols=183  Identities=21%  Similarity=0.245  Sum_probs=134.5

Q ss_pred             HhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 009632          209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL  288 (530)
Q Consensus       209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  288 (530)
                      ..+.|++.++|..|.+.       .+        ...+..+++|+++.||..++..+       +.        +.+..+
T Consensus        49 ~~l~~p~~e~Ra~Aa~~-------a~--------~~~L~~Ll~D~d~~VR~~AA~~L-------p~--------~~L~~L   98 (233)
T d1lrva_          49 QYLADPFWERRAIAVRY-------SP--------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSAL   98 (233)
T ss_dssp             GGTTCSSHHHHHHHHTT-------SC--------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGT
T ss_pred             HHhcCCcHHHHHHHHhc-------CC--------HHHHHHHhcCCCHHHHHHHHHHc-------CH--------HHHHHH
Confidence            47789999999877642       21        23466789999999999997654       21        346778


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc
Q 009632          289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  368 (530)
Q Consensus       289 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  368 (530)
                      ++|++++||..++.++.               .+.+..+++|++|.||..+++.+       +        .+.+..+++
T Consensus        99 ~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~-------~--------~~~L~~L~~  148 (233)
T d1lrva_          99 MFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRFMR  148 (233)
T ss_dssp             TTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGTTT
T ss_pred             hcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhcc-------c--------hhHHHHHhc
Confidence            89999999998876541               23456678999999999988642       1        133556789


Q ss_pred             CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCC
Q 009632          369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK  448 (530)
Q Consensus       369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~  448 (530)
                      |+++.||..++..++       .        +.+..+.+|+++.+|..++..++       .        |.+..+++|+
T Consensus       149 D~d~~VR~~aA~~~~-------~--------~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D~  198 (233)
T d1lrva_         149 DEDRQVRKLVAKRLP-------E--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHDP  198 (233)
T ss_dssp             CSCHHHHHHHHHHSC-------G--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGCS
T ss_pred             CCCHHHHHHHHHhcC-------H--------HHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhCC
Confidence            999999998876543       2        23456678999999999876542       2        4567788999


Q ss_pred             cHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHH
Q 009632          449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILR  497 (530)
Q Consensus       449 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~  497 (530)
                      ++.||..+++.+       +         +.+...+.|++..||..+.+
T Consensus       199 d~~VR~aaae~~-------~---------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         199 DWTVRLAAVEHA-------S---------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SHHHHHHHHHHS-------C---------HHHHHHCCCCCHHHHHHHHC
T ss_pred             CHHHHHHHHHhc-------c---------HHHHHHhCCCCHHHHHHHHH
Confidence            999999987532       2         23455678999999998864

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=4.2e-08  Score=103.60  Aligned_cols=507  Identities=10%  Similarity=0.021  Sum_probs=280.8

Q ss_pred             cCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-c-cCC-chHHHHHHHHHHhccccc-CCC---
Q 009632            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N-NDD-DDEVLLAMAEELGVFIPY-VGG---   80 (530)
Q Consensus         8 ~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~-~d~-~~~vr~~~~~~l~~~~~~-~~~---   80 (530)
                      ++.+..++..-  .+++.|+.|-..|.++ +. .|     .+...+.+ + +++ +..+|..|+..+.+.++. .+.   
T Consensus         4 ~~~l~~ll~~s--~~~~~~k~Ae~~L~~~-~~-~p-----~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~   74 (959)
T d1wa5c_           4 LETVAKFLAES--VIASTAKTSERNLRQL-ET-QD-----GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG   74 (959)
T ss_dssp             HHHHHHHHHHT--TSGGGHHHHHHHHHHH-HT-ST-----THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred             HHHHHHHHHHC--CChHHHHHHHHHHHHH-Hc-CC-----CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            44556666654  5556899999998765 22 22     34444444 2 333 457999999999876652 221   


Q ss_pred             -----ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCC
Q 009632           81 -----VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (530)
Q Consensus        81 -----~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~  155 (530)
                           ++....+-..+...+.+++..+|...+.+++.++..-.+ ..++.++|.+...+++++...+..+..++..+.+.
T Consensus        75 ~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p-~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~  153 (959)
T d1wa5c_          75 NHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR  153 (959)
T ss_dssp             CBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc-cccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence                 112233444555566678889999999999999986544 34777999999999888888888899999998887


Q ss_pred             CCh-----H-------HHHHHHHHHHhhcC-----CCChhHHHHHHHH----HHHHHhhh-------cchh---hHHHHH
Q 009632          156 APD-----I-------LKTELRSIYTQLCQ-----DDMPMVRRSAASN----LGKFAATV-------EPAH---LKTDIM  204 (530)
Q Consensus       156 ~~~-----~-------~~~~l~~~l~~l~~-----d~~~~vR~~a~~~----l~~l~~~~-------~~~~---~~~~l~  204 (530)
                      ...     .       ..+.+.+.+..++.     ..+......+...    +....+.+       .++.   ....+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (959)
T d1wa5c_         154 WRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGM  233 (959)
T ss_dssp             GTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHH
T ss_pred             HHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            532     1       11223333333221     0111111111111    11111111       0111   112233


Q ss_pred             HHHHHhhcCCc---------------hhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhc----C-CCCHHHHHHHH
Q 009632          205 SIFEDLTQDDQ---------------DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFS----Q-DKSWRVRYMVA  262 (530)
Q Consensus       205 ~~l~~~~~d~~---------------~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~----~-d~~~~vr~~~~  262 (530)
                      ..+...+....               ..++......+..+.+..+.  ..+.+.+++.+...+    . .....+...+.
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  313 (959)
T d1wa5c_         234 GIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSL  313 (959)
T ss_dssp             HHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHH
T ss_pred             HHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            33444432110               13566666666666655443  122233333333322    2 23344555555


Q ss_pred             HHHHHHHHHh------CCcccccchH-HHHHHhcC-----------C------------CcHHHHHHHHHHHHHHHHhhC
Q 009632          263 NQLYELCEAV------GPEPTRMDLV-PAYVRLLR-----------D------------NEAEVRIAAAGKVTKFCRILN  312 (530)
Q Consensus       263 ~~l~~l~~~~------~~~~~~~~l~-~~l~~~l~-----------d------------~~~~vr~~a~~~l~~~~~~~~  312 (530)
                      ..+..+....      ........++ +.+...+.           |            .....|.++...+..++...+
T Consensus       314 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~  393 (959)
T d1wa5c_         314 SFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE  393 (959)
T ss_dssp             HHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhcc
Confidence            5554444321      1101111111 11111111           1            112356777777777776654


Q ss_pred             HHHHHhhhhHhHhHhc------cCCcHHHHHHHHHHHHhhccccC-----------HHHHHHhHHHHHHHhh---cCCCh
Q 009632          313 PELAIQHILPCVKELS------SDSSQHVRSALASVIMGMAPLLG-----------KDATIEQLLPIFLSLL---KDEFP  372 (530)
Q Consensus       313 ~~~~~~~l~~~l~~~~------~d~~~~vr~~~~~~l~~l~~~~~-----------~~~~~~~l~~~l~~~l---~d~~~  372 (530)
                      .. ..+.+.+.+.+..      .+.+|+.|.+++..++.+....+           ...+.+.+.+.+...+   .+...
T Consensus       394 ~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~  472 (959)
T d1wa5c_         394 VL-VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHI  472 (959)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCH
T ss_pred             cc-chHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchH
Confidence            43 2233444443332      25689999998888877643211           0112333333333333   44567


Q ss_pred             HHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh----------h---hHHHHHHH
Q 009632          373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------G---FFDDKLGA  439 (530)
Q Consensus       373 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~----------~---~~~~~~~~  439 (530)
                      .+|..++..++.++.....+. ...+++.+...+++++..+|..|+.++..+......          +   .+.+.++.
T Consensus       473 ~lr~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~  551 (959)
T d1wa5c_         473 ILRVDAIKYIYTFRNQLTKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLK  551 (959)
T ss_dssp             HHHHHHHHHHHHTGGGSCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHH
Confidence            899999999999988776554 367899999999999999999999999998764321          1   12344555


Q ss_pred             HHHHHhcCCcH-----HHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHh----hccCC-ChHHHHHHHHHHHHHhhhcC
Q 009632          440 LCMQWLQDKVY-----SIRDAAANNLKRLAEEFGPEWA--MQHITPQVLE----MINNP-HYLYRMTILRAISLLAPVMG  507 (530)
Q Consensus       440 ~l~~~l~d~~~-----~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~----~~~d~-~~~vr~~a~~~l~~i~~~~~  507 (530)
                      .+...+.+...     .+...+..++..+...+++...  ...+++.+..    ..+++ +...+..+.++++.+....+
T Consensus       552 ~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~  631 (959)
T d1wa5c_         552 NLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ  631 (959)
T ss_dssp             HHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcC
Confidence            55555543222     1235688888888888875432  1334444433    33443 56678888899999887766


Q ss_pred             hHH---HHhhHHHHHHhhccCC
Q 009632          508 SEI---TCSRLLPVVINASKDR  526 (530)
Q Consensus       508 ~~~---~~~~~~p~l~~~l~D~  526 (530)
                      ++.   +.+.++|.+...+...
T Consensus       632 ~~~~~~l~~~l~p~i~~~~~~~  653 (959)
T d1wa5c_         632 RQNLPLLVDSMMPTFLTVFSED  653 (959)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHHHHHhcc
Confidence            543   4566788777765543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.4e-09  Score=104.16  Aligned_cols=148  Identities=10%  Similarity=0.084  Sum_probs=102.1

Q ss_pred             hHHHHHHHhhc-CCChHHHHHHHHhhHHhhhhhch-------hH-HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh
Q 009632          358 QLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-------DL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  428 (530)
Q Consensus       358 ~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-------~~-~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~  428 (530)
                      ..++.+..++. ..+..++..+...+..+......       .. .....+|.+.++++++++.+|..++.++..++...
T Consensus       283 ~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             cHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence            34555555554 45677788877777776543211       11 12457899999999999999999999999998643


Q ss_pred             Ch-hhHHHHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHHhChh---HHhhhhHHHHHhhccC-CChHHHHHHHH
Q 009632          429 GV-GFFDDKLGALCMQWLQD------KVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINN-PHYLYRMTILR  497 (530)
Q Consensus       429 ~~-~~~~~~~~~~l~~~l~d------~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d-~~~~vr~~a~~  497 (530)
                      .. +......+|.+..++.+      +..+|+..++.++..+.......   ......++.+.+++.+ .+..++..|+.
T Consensus       363 ~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~  442 (457)
T d1xm9a1         363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL  442 (457)
T ss_dssp             GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHH
Confidence            32 22345566777777643      44679999999999987543321   1224578889998765 56789999999


Q ss_pred             HHHHHhhh
Q 009632          498 AISLLAPV  505 (530)
Q Consensus       498 ~l~~i~~~  505 (530)
                      ++.+++..
T Consensus       443 ~L~~L~~~  450 (457)
T d1xm9a1         443 LLSDMWSS  450 (457)
T ss_dssp             HHHTTSSS
T ss_pred             HHHHHHcC
Confidence            99988643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.2e-09  Score=99.55  Aligned_cols=135  Identities=14%  Similarity=0.103  Sum_probs=90.7

Q ss_pred             CCcHHHHHHHHHHHHhhccccCHH--H------HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-hHHHhhHHH
Q 009632          330 DSSQHVRSALASVIMGMAPLLGKD--A------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLP  400 (530)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~~~~--~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~  400 (530)
                      ..+..++......+..++......  .      .....+|.+..+++++++.+|..++.++..+...-.. +.+.+..++
T Consensus       295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~  374 (457)
T d1xm9a1         295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFP  374 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHH
T ss_pred             ccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHH
Confidence            345566666666666654332211  0      1124678999999999999999999999998754322 223345667


Q ss_pred             HHHHHhcC------CChHHHHHHHHHHHHHHhhhCh---hhHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHH
Q 009632          401 AIVELAED------RHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLA  464 (530)
Q Consensus       401 ~l~~~~~~------~~~~~R~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~  464 (530)
                      .+..++.+      .+..++..++.++..++.....   .......++.+.+++.+ +...++++|+.+|..++
T Consensus       375 ~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~  448 (457)
T d1xm9a1         375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             HHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            77776643      2457999999999998754321   12234567888888765 46789999999998775

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.98  E-value=4.7e-11  Score=90.09  Aligned_cols=109  Identities=19%  Similarity=0.291  Sum_probs=89.3

Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc
Q 009632          367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  446 (530)
Q Consensus       367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~  446 (530)
                      |+|+++.||..|+.+|+.+    |.     ..++.+.+.+.|++|.+|..++.+++.+.        ....+|.+..++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~----~~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM----GD-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC----SS-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh----CH-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhc
Confidence            5789999999999998875    32     23566778889999999999999987542        2346788889999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHH
Q 009632          447 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAIS  500 (530)
Q Consensus       447 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~  500 (530)
                      |+++.||..|+.+|+.+    |    ....++.+..+++|++..||..|+.+|.
T Consensus        64 d~~~~VR~~a~~aL~~i----~----~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQI----G----GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HCCTHHHHHHHHHHHHH----C----SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             cchhHHHHHHHHHHHHh----C----ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999876    3    2457888889999999999999998875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.94  E-value=6e-11  Score=89.50  Aligned_cols=106  Identities=17%  Similarity=0.268  Sum_probs=47.9

Q ss_pred             cCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC
Q 009632          212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD  291 (530)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  291 (530)
                      +|+++.||..|+.+|+.++    ++     .++.+...++|++|.||..++.+|+.+.        ....+|.+..+++|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~----~~-----~~~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~d   64 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG----DE-----AFEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLED   64 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS----ST-----THHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC----HH-----HHHHHHHHHcCCCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhcc
Confidence            3445555555555544321    11     2233444455555555555555544331        12334445555555


Q ss_pred             CcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHH
Q 009632          292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV  342 (530)
Q Consensus       292 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~  342 (530)
                      +++.||.+++.+|+.+..        +...|.+..+++|+++.||..++..
T Consensus        65 ~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~a  107 (111)
T d1te4a_          65 DSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNY  107 (111)
T ss_dssp             CCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHH
Confidence            555555555555554421        2233444444444444555444443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.6e-08  Score=85.57  Aligned_cols=145  Identities=17%  Similarity=0.137  Sum_probs=111.6

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcCch---hh
Q 009632          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ---DC  238 (530)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~---~~  238 (530)
                      +.+..+++++++.+|..++.+++.++...+.   .......+|.+.+++. +.++.+|..++.++..++...+..   ..
T Consensus        62 ~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  141 (264)
T d1xqra1          62 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFL  141 (264)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHH
Confidence            3344577888999999999999999975433   2234567888888885 567889999999999998765431   12


Q ss_pred             hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 009632          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  310 (530)
Q Consensus       239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  310 (530)
                      ....++.+..++.+.+..++..++.++..++......   ......+|.+..+++++++++|..++.+|..++..
T Consensus       142 ~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         142 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            4457888888888999999999999999988753321   12345789999999999999999999999998754

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.9e-08  Score=87.46  Aligned_cols=175  Identities=17%  Similarity=0.128  Sum_probs=126.7

Q ss_pred             cccchHHHHHHHHHHHHHHhhcChh-hh--hhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHH
Q 009632           96 TVEETCVRDKAVESLCRIGSQMRES-DL--VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIY  168 (530)
Q Consensus        96 ~d~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l  168 (530)
                      ...+...|..|+..|..+++..... .+  .+.+.+++..+.++++..+|..++..++.++...+..    .....+|.+
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          27 QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            3456677888888888887653321 11  1224555666677777888888888888888654331    234567777


Q ss_pred             Hhhc-CCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hh-hhhc
Q 009632          169 TQLC-QDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QD-CVAH  241 (530)
Q Consensus       169 ~~l~-~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~  241 (530)
                      ..++ +++++.+|..++.++..++...++   .......++.+.+++.+++..++..++.++..++..-+.  .. ....
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            7776 467889999999999999876544   123345688899999999999999999999998865433  11 2334


Q ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632          242 ILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (530)
Q Consensus       242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  270 (530)
                      .+|.+..++++.+..+|..++.+|+.++.
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999988874

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.14  E-value=0.0003  Score=62.74  Aligned_cols=272  Identities=11%  Similarity=0.029  Sum_probs=132.6

Q ss_pred             HHHHHHHHhcCCccchhHHHHhHhhh---hcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHH
Q 009632          126 YIPLVKRLAAGEWFTARVSACGLFHI---AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD  202 (530)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~~~~~l~~---l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~  202 (530)
                      +...+..+.++....+...+..-+..   +...++.+....+.+.+.     ..+..|+....+++....        ..
T Consensus        22 ~~~~l~~L~~~~~~~v~~~~~~kF~~Lv~~lR~~~~e~l~~v~~~~~-----~~~~~r~~~lDal~~~GT--------~~   88 (336)
T d1lsha1          22 IHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLH-----QQKDYRRWILDAVPAMAT--------SE   88 (336)
T ss_dssp             HHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTTSCHHHHHHHHHHHT-----TSHHHHHHHHHHHHHHCS--------HH
T ss_pred             HHHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCHHHHHHHHHHHh-----cChhHHHHHHHHHHHhCC--------HH
Confidence            34444444444333333333333322   344555544444443332     245567666666555432        23


Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCCc--c
Q 009632          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE--P  276 (530)
Q Consensus       203 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~--~  276 (530)
                      .+..+.+++.++.-..- .|...+..++....+.   ...+..+..++++    .++.+|..+.-++|.++..+...  .
T Consensus        89 a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt---~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~  164 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSA-EATQIVASTLSNQQAT---RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS  164 (336)
T ss_dssp             HHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCC---HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCC---HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCC
Confidence            34455555544432222 2333444444333221   2244445555554    46889999999999988764321  1


Q ss_pred             c----ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhc---cCCcHHHHHHHHHHHHhhccc
Q 009632          277 T----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---SDSSQHVRSALASVIMGMAPL  349 (530)
Q Consensus       277 ~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~---~d~~~~vr~~~~~~l~~l~~~  349 (530)
                      .    .+.+...+.+.....+.+-+..++++||.++.    ....+.+.|++....   .+...++|..++.++..++..
T Consensus       165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~  240 (336)
T d1lsha1         165 CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR  240 (336)
T ss_dssp             CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred             CcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhc
Confidence            1    22333444444445555666677777777652    111123333332111   123467888888777776554


Q ss_pred             cCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhh
Q 009632          350 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL  428 (530)
Q Consensus       350 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~  428 (530)
                      . +....+.+++++.+  .+.+.++|.+|...+-..   -..    ...+..+...+ .+++.+|+......+..+++.-
T Consensus       241 ~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t---~P~----~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         241 D-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFES---KPS----VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             C-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHT---CCC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             C-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhc---CCC----HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Confidence            2 23333444444443  344577777776655321   011    12333333332 4556666666666666665543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.80  E-value=0.0011  Score=58.94  Aligned_cols=168  Identities=13%  Similarity=0.107  Sum_probs=105.8

Q ss_pred             HHHHHHHhhcC----CchhHHHHHHHHHHHHhhhcCc------hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 009632          203 IMSIFEDLTQD----DQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV  272 (530)
Q Consensus       203 l~~~l~~~~~d----~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  272 (530)
                      .+..+..++.+    +++.+|..++-+++++...+-.      +.+...+...+.+..+..+...+..+.++||+++   
T Consensus       124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g---  200 (336)
T d1lsha1         124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG---  200 (336)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC---
Confidence            34444444443    3567888888888888765321      2233445555555566667777778888888886   


Q ss_pred             CCcccccchHHHHHHhcCC-------CcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHh
Q 009632          273 GPEPTRMDLVPAYVRLLRD-------NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG  345 (530)
Q Consensus       273 ~~~~~~~~l~~~l~~~l~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~  345 (530)
                           ....++.+...+.+       ....+|.+|++++..+... .+....+.+++.+.+  ...+..+|.++...+..
T Consensus       201 -----~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~-~p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         201 -----QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLN--VAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             -----CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHH
T ss_pred             -----CHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhc-CcHHHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence                 24456777776643       2468999999999988654 344455666777764  34557799888877655


Q ss_pred             hccccCHHHHHHhHHHHHHHh-hcCCChHHHHHHHHhhHHhhhh
Q 009632          346 MAPLLGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQV  388 (530)
Q Consensus       346 l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~  388 (530)
                      --   +.....    ..+... -.|++..|+....+.+..+.+.
T Consensus       273 t~---P~~~~l----~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         273 SK---PSVALV----SMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             TC---CCHHHH----HHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             cC---CCHHHH----HHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            31   112222    223333 3577888888887777776654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.43  Score=40.34  Aligned_cols=187  Identities=13%  Similarity=0.047  Sum_probs=109.6

Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH----HH---HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc-
Q 009632          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPL-  349 (530)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~----~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-  349 (530)
                      ..++..++..+..-+.+.|+.+...+..+...- |..    .+   .+.++..+...-++++-..-.+.  .+...+.. 
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~--mLREcik~e  145 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRHE  145 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTSH
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhH--HHHHHHhhH
Confidence            456666666777666777777777666665421 110    00   12233333333333332111111  01000000 


Q ss_pred             -cCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhHH---HhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 009632          350 -LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIP  422 (530)
Q Consensus       350 -~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~~l~  422 (530)
                       +..-.....-+--++..++-++.+|-..|..++..+.....   .+.+   .+.++..+.+++.++||-+|..++..++
T Consensus       146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence             00000111112234567788889999999888887764321   1221   2456667778899999999999999999


Q ss_pred             HHHhhhChhhHH------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632          423 LLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (530)
Q Consensus       423 ~l~~~~~~~~~~------~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  467 (530)
                      .+.---....+.      ..-+..++.++.|+..+++..|.+++..++..-
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            886422221111      346788999999999999999999998887654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=2.2  Score=35.88  Aligned_cols=207  Identities=10%  Similarity=0.056  Sum_probs=129.1

Q ss_pred             hhhhHhHhHhccCCcHHHHHHHHHHHHhhccc-cCH----HHH---HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 009632          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPL-LGK----DAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (530)
Q Consensus       318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-~~~----~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  389 (530)
                      ..++..+...+..-++..|..+...+..+... .|.    -.+   .+.++..+.....+++...  .+..-|...++.-
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl--~~G~mLREcik~e  145 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHE  145 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSH
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhh--hhhHHHHHHHhhH
Confidence            34555555555667788888888888776432 221    111   2355666666665544322  2222222222210


Q ss_pred             c--hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---hhhHH---HHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 009632          390 G--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD---DKLGALCMQWLQDKVYSIRDAAANNLK  461 (530)
Q Consensus       390 ~--~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~---~~~~~~l~~~l~d~~~~Vr~~a~~~l~  461 (530)
                      .  .--+...-+..+.++.+.++..+-..|..++..+.....   .+++.   +.++..+.+++..++.-+|..+++.||
T Consensus       146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            0  000112234456678889999999999988887765432   23322   456777788999999999999999999


Q ss_pred             HHHHHhChhHH------hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc--ChHHH------HhhHHHHHHhhccCC
Q 009632          462 RLAEEFGPEWA------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVM--GSEIT------CSRLLPVVINASKDR  526 (530)
Q Consensus       462 ~l~~~~~~~~~------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~--~~~~~------~~~~~p~l~~~l~D~  526 (530)
                      .+.-.-.+..+      ..+-+..++++++|++..++..|...+.-++-+-  +++..      .+.++.++..+..|+
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~  304 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  304 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCC
Confidence            99854322211      1445778889999999999999999888776432  22221      566777788877775

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=1.5  Score=32.43  Aligned_cols=75  Identities=11%  Similarity=0.015  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHhhccC------CChHHHHHHHHHHHHHhh
Q 009632          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLEMINN------PHYLYRMTILRAISLLAP  504 (530)
Q Consensus       435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d------~~~~vr~~a~~~l~~i~~  504 (530)
                      ...+..+.+-+.++++.+...|+..+..++.++|..+..    ..++..|.+++.+      .+..||..++..+..+..
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            445666777788899999999999999999999887643    5677777777653      466899999999999988


Q ss_pred             hcChH
Q 009632          505 VMGSE  509 (530)
Q Consensus       505 ~~~~~  509 (530)
                      .++..
T Consensus       124 ~fp~~  128 (145)
T d1ujka_         124 GLPEE  128 (145)
T ss_dssp             HCTTC
T ss_pred             HCCCc
Confidence            77653

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.95  E-value=2.2  Score=31.45  Aligned_cols=108  Identities=7%  Similarity=0.034  Sum_probs=75.2

Q ss_pred             cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE  482 (530)
Q Consensus       407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~  482 (530)
                      ..++|..-...+..+..     ++. -....+..+.+-+.++++.+...|+..+..++.++|..+..    ..++..+.+
T Consensus        15 ~~~dw~~il~icD~I~~-----~~~-~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~   88 (143)
T d1mhqa_          15 SEQDWSAIQNFCEQVNT-----DPN-GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK   88 (143)
T ss_dssp             SSCCHHHHHHHHHHHHH-----SSH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHc-----CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence            45677654444444431     111 12345666777788999999999999999999999987643    567788888


Q ss_pred             hccC------CChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHH
Q 009632          483 MINN------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI  520 (530)
Q Consensus       483 ~~~d------~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~  520 (530)
                      +..+      .+..||..++..+..+...++.+.-...++..|+
T Consensus        89 li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~~~~~~~~y~~Lk  132 (143)
T d1mhqa_          89 VLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK  132 (143)
T ss_dssp             TTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence            7764      3678999999999999988875443444444443

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=2.4  Score=31.58  Aligned_cols=108  Identities=7%  Similarity=0.048  Sum_probs=74.0

Q ss_pred             hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL  481 (530)
Q Consensus       406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~  481 (530)
                      ..+++|..-...+..+..     +.. -....+..+.+-+..+++.+...|+..+..++.++|..+..    ..++..+.
T Consensus        15 l~~~dw~~ileicD~In~-----~~~-~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~   88 (151)
T d1juqa_          15 NRQEDWEYIIGFCDQINK-----ELE-GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI   88 (151)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----STT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhc-----CCc-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHH
Confidence            345678655555544432     111 13445666777788899999999999999999999887643    55777777


Q ss_pred             hhccC------CChHHHHHHHHHHHHHhhhcChHHHHhhHHHHH
Q 009632          482 EMINN------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  519 (530)
Q Consensus       482 ~~~~d------~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l  519 (530)
                      ++++.      .+..|+..++..+..+...++.......++..|
T Consensus        89 kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~~~~~~~~~Y~~L  132 (151)
T d1juqa_          89 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHML  132 (151)
T ss_dssp             HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHcccCCCCcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            77654      266799999999999988876543333444433

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.77  E-value=3.1  Score=33.12  Aligned_cols=135  Identities=7%  Similarity=-0.011  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCccccc
Q 009632          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRM  279 (530)
Q Consensus       201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~  279 (530)
                      +.+...+..+...+.-+.|..|+..+........++     .++.+..++.+ ++|.+-...+..++......     .+
T Consensus        49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~~-----~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~-----~~  118 (213)
T d2b6ca1          49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSLE-----EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LT  118 (213)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH-----HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GG
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHccCccHHHHHHHHHHHHHHHHHh-----hh
Confidence            345556666667777788888888777666554432     34555555554 56887777766554433221     23


Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (530)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  349 (530)
                      .+.+.+.....+++.-+|..++-+.-.+......    +.+++.+..+..|++.-||.++...+..++..
T Consensus       119 ~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~~----~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         119 ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQ----DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcccH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            4556677777777777766665443222222111    33455566666777777777777777776644

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.15  E-value=1.5  Score=32.51  Aligned_cols=98  Identities=13%  Similarity=0.087  Sum_probs=70.1

Q ss_pred             hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL  481 (530)
Q Consensus       406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~  481 (530)
                      ..+++|..-...+..+..  +..|    ....+..+.+-+.++++.|...|+..+..++..+|..+..    ..++..+.
T Consensus        18 ~~~~dw~~il~icD~I~~--~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~   91 (145)
T d1dvpa1          18 RLEPDWPSILLICDEINQ--KDVT----PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFS   91 (145)
T ss_dssp             CSSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhC--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHH
Confidence            455678755555554431  1112    2345666777888999999999999999999998877543    45666766


Q ss_pred             hhcc-CCChHHHHHHHHHHHHHhhhcChH
Q 009632          482 EMIN-NPHYLYRMTILRAISLLAPVMGSE  509 (530)
Q Consensus       482 ~~~~-d~~~~vr~~a~~~l~~i~~~~~~~  509 (530)
                      ++.. .++..||..++..+..+...++.+
T Consensus        92 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          92 SFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            6654 357789999999999998887654

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.24  E-value=1.8  Score=32.01  Aligned_cols=71  Identities=8%  Similarity=0.048  Sum_probs=35.8

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhh----HHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcC
Q 009632          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLE  234 (530)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~  234 (530)
                      ....+.+-+.++++.+...|+..+..+.+++|....    ...+++.+..++.. ....|+..+++.+...+..++
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            334444455566777777777777777766655211    12233333333322 233455555555555444443

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.97  E-value=4.5  Score=32.10  Aligned_cols=133  Identities=9%  Similarity=-0.058  Sum_probs=82.3

Q ss_pred             hHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcchhhHHHH
Q 009632          125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAHLKTDI  203 (530)
Q Consensus       125 ~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  203 (530)
                      .+...+..+-..+..+.|..++.++........+.    .++.+..++.. ++|.+-...+..++......+     +..
T Consensus        50 ~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~~----~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~-----~~~  120 (213)
T d2b6ca1          50 KLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSLE----EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TEL  120 (213)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH----HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCHH----HHHHHHHHHccCccHHHHHHHHHHHHHHHHHhh-----hhH
Confidence            34555666667777778888888887766555433    23444454443 467777766655544332211     335


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (530)
Q Consensus       204 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  270 (530)
                      .+.+.+...+++.-+|..|+-+.-...    .......+++.+..+..|++.-||.+++..|..++.
T Consensus       121 ~~~l~~w~~s~~~w~rR~aiv~~l~~~----~~~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k  183 (213)
T d2b6ca1         121 PTIFALFYGAENFWNRRVALNLQLMLK----EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK  183 (213)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHH----HcccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence            577777888888777776654432221    122234466777777888888888888888877763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.70  E-value=9.1  Score=34.19  Aligned_cols=68  Identities=15%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             HHHHHHHHhc----------CCcHHHHHHHHHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632          437 LGALCMQWLQ----------DKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (530)
Q Consensus       437 ~~~~l~~~l~----------d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~  503 (530)
                      ++..+.+++.          ..++.+-..||.=+|++++.++....   .-.....++++++++|.+||..|+.++..++
T Consensus       393 llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         393 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            5666666663          23567788899999999999864321   1235667888899999999999999999886


Q ss_pred             h
Q 009632          504 P  504 (530)
Q Consensus       504 ~  504 (530)
                      .
T Consensus       473 ~  473 (477)
T d1ho8a_         473 G  473 (477)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.14  E-value=15  Score=32.70  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=51.9

Q ss_pred             hHHHHHHHHhc----------CCChHHHHHHHHHHHHHHhhhChhhH-HH--HHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632          397 SLLPAIVELAE----------DRHWRVRLAIIEYIPLLASQLGVGFF-DD--KLGALCMQWLQDKVYSIRDAAANNLKRL  463 (530)
Q Consensus       397 ~l~~~l~~~~~----------~~~~~~R~~~~~~l~~l~~~~~~~~~-~~--~~~~~l~~~l~d~~~~Vr~~a~~~l~~l  463 (530)
                      .++..|.++++          +.+..+-..||.=+|.++...+.... .+  .....+++++.+++++||..|+.|++.+
T Consensus       392 ~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         392 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  471 (477)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            45666666664          12466777788889999998864432 12  2566789999999999999999999988


Q ss_pred             HHH
Q 009632          464 AEE  466 (530)
Q Consensus       464 ~~~  466 (530)
                      ...
T Consensus       472 m~~  474 (477)
T d1ho8a_         472 IGY  474 (477)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.87  E-value=7  Score=28.61  Aligned_cols=73  Identities=10%  Similarity=-0.042  Sum_probs=49.9

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHHhhcC------CchhHHHHHHHHHHHHhh
Q 009632          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD------DQDSVRLLAVEGCAALGK  231 (530)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d------~~~~vr~~a~~~l~~l~~  231 (530)
                      .+.+..+.+-+.+.++.+...++..+..+.+++|+..    ....+++.+.+++.+      .+..|+...++.+...+.
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            3445555555677888888888888888888887633    234566666666653      345788888887777766


Q ss_pred             hcC
Q 009632          232 LLE  234 (530)
Q Consensus       232 ~~~  234 (530)
                      .++
T Consensus       124 ~fp  126 (145)
T d1ujka_         124 GLP  126 (145)
T ss_dssp             HCT
T ss_pred             HCC
Confidence            654

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=7.6  Score=28.32  Aligned_cols=74  Identities=8%  Similarity=0.001  Sum_probs=59.2

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH----HHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHH
Q 009632          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE  465 (530)
Q Consensus       396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~Vr~~a~~~l~~l~~  465 (530)
                      ...+..+.+-++++++.+...++..+..+.+.+|..+..    ..++.-+.+++.+      ....||..++..+.....
T Consensus        37 k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            445666777788999999999999999999999987754    4577778887764      356899999999988887


Q ss_pred             HhCh
Q 009632          466 EFGP  469 (530)
Q Consensus       466 ~~~~  469 (530)
                      .+..
T Consensus       117 ~f~~  120 (143)
T d1mhqa_         117 WFPE  120 (143)
T ss_dssp             HCTT
T ss_pred             HcCC
Confidence            7753