Citrus Sinensis ID: 009636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
Protein Sequence
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccEEcccccccccccccccc
Coil and Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrreDNMVEIRKNKREESLQKKRREglqnqqplandvnapgtakklenlpVMVAGVwsndsgvqyeCTTQFRKLLsiersppieevirsgvvprfVEFLLREDYPQLQFEAAWALtniasgtsehtkVVIDHGAVPIFVKLlyspsddvREQAVWALGniagdsprcrdlvlsqgglvpllaqlngqpklsmLRNATWTlsnfcrgkpqppfdqvspalpaLAHLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVfprlaeflmhpspsvlipalrtvgnivtgddmqtQCVIEYQALPCLLNLLsgnykksikkeacwtvsnitagnREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISnatsggtheQIKFLVIQGCikplcdllvcpdpriVTVCLEGLENILKVGEAeknlgntdvNVFTQMIDDAEGLEKIEslqthdnaEIYEKSVKLLETYwlddedetmppgdasqpgfgfggngnppapsggfnfs
Flexible Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrrednmveirknkreeslqkkrreglqnqqplandvnapgtakKLENLPVMVAGVWSNDSGVQYECTTQFRKLlsiersppieevirsgvVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGeaeknlgntdVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Low Complexity Region (SEG)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQpgfgfggngnppapsggfnfS
Disordered region (IsUnstruct)
***********************************************************************LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK****FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD**********************************
Disordered Region (DISOPRED)
***********************************IRKNKREESLQKKRRE***********************LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPP**********************FNF*
Disordered Region (DISEMBL)
****************KVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Disordered Region (DISPRO)
******************AVDADEGRRRREDNMVEIRKNKREESLQKK******************GTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD*********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	530	2.2.26 [Sep-21-2011]
Q9SLX0	534	Importin subunit alpha-1b	yes	no	0.992	0.985	0.787	0.0
Q96321	532	Importin subunit alpha-1	yes	no	0.996	0.992	0.786	0.0
Q71VM4	526	Importin subunit alpha-1a	no	no	0.975	0.982	0.783	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.992	0.998	0.774	0.0
O04294	531	Importin subunit alpha-2	no	no	0.979	0.977	0.690	0.0
Q76P29	516	Importin subunit alpha-B	yes	no	0.949	0.974	0.588	1e-169
O35345	536	Importin subunit alpha-7	yes	no	0.928	0.917	0.564	1e-150
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.928	0.917	0.562	1e-149
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.928	0.917	0.562	1e-148
O60684	536	Importin subunit alpha-7	yes	no	0.928	0.917	0.562	1e-148

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/536 (78%), Positives = 465/536 (86%), Gaps = 10/536 (1%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP+ +A+ RR++YKVAVDADEGRRRREDNMVEIRK++REESL KKRR+GL       
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 54  QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI 113
               PL    ++    +KLE LP MV  V S+DS VQ E TTQFRKLLSIERSPPIEEVI
Sbjct: 61  AAASPLL--AHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVI 118

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
            +GVVPRF+ FL REDYPQLQFEAAWALTNIASGTS++TKVV++ GAVPIFVKLL SPS+
Sbjct: 119 NTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSE 178

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           DVREQAVWALGN+AGDSP+CRDLVL+ GGL PLL QLN   KLSMLRNATWTLSNFCRGK
Sbjct: 179 DVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGK 238

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
           PQP F+QV PAL AL  LIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GVFPRL E 
Sbjct: 239 PQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVEL 298

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           LMHPS SVLIPALRTVGNIVTGDDMQTQCVI++QALPCLLNLL+ N+KKSIKKEACWT+S
Sbjct: 299 LMHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTIS 358

Query: 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG 413
           NITAGNREQIQAVI ANII PLV LL+ AEFDIKKEAAWAISNATSGGTH+QIK+LV QG
Sbjct: 359 NITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQG 418

Query: 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES 473
           CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG  DVN + QMIDDAEGLEKIE+
Sbjct: 419 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIEN 478

Query: 474 LQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529
           LQ+HDN EIYEK+VK+LE+YWL++ED+ MP GD +Q GF F GN  P  PSGGFNF
Sbjct: 479 LQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQNGFNF-GNQQPNVPSGGFNF 533

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/534 (78%), Positives = 469/534 (87%), Gaps = 6/534 (1%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct: 61  S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct: 240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           +QIQ V+EAN+I PLV+LL+NAEFDIKKEAAWAISNATSGG+H+QIK+LV QGCIKPLCD
Sbjct: 360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LLVCPDPRI+TVCLEGLENILKVGEAEKNLG+T D+N + Q+IDDAEGLEKIE+LQ+HDN
Sbjct: 420 LLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDN 479

Query: 480 AEIYEKSVKLLETYWLDDEDE--TMPPG-DASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++ED+    PPG D SQ GF FGGN   P PSGGFNFS
Sbjct: 480 NEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGN-QAPVPSGGFNFS 532

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/521 (78%), Positives = 458/521 (87%), Gaps = 4/521 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 61  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 120 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           +QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIK+LV +GCIKPLCD
Sbjct: 360 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480
           LL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+QMID+AEGLEKIE+LQ+HDN 
Sbjct: 420 LLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN 479

Query: 481 EIYEKSVKLLETYWLDDEDETMPPGDASQP---GFGFGGNG 518
           EIYEK+VK+LE YW+D+ED+TM     + P    F FG  G
Sbjct: 480 EIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGG 520

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/531 (77%), Positives = 461/531 (86%), Gaps = 5/531 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPNS+ ++RR++YKVAVDA+EGRRRREDNMVEIRKNKREE+L KKRREGL   Q   
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +        KKLE LP ++AGVWS+DS +Q ECTTQFRKLLSIER+PPIEEVI+SGVVPR
Sbjct: 61  STAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL R+DYPQLQFEAAWALTNIASGTSE+TKVVID+G+VPIF++LL SPSDDVREQAV
Sbjct: 121 FVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGNIAGDSP+ RDLVL  G LV LLAQ N Q KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 181 WALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
              ALP L  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL E L+H SPS
Sbjct: 241 TKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQ +I++ ALPCL+NLL+ NYKKSIKKEACWT+SNITAGNR
Sbjct: 301 VLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNR 360

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
            QIQ VIEA II PLV LL+NAEF+IKKEAAWAISNATSGG H+QIKFLV QGCIKPLCD
Sbjct: 361 NQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCD 420

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD-VNVFTQMIDDAEGLEKIESLQTHDN 479
           LLVCPDPRIVTVCLEGLENILK+GEA+K+LGNT+ VNV+ Q+ID+AEGLEKIE+LQ+HDN
Sbjct: 421 LLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDN 480

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++ED    P   ++  F FGG  +   PSGGFNFS
Sbjct: 481 TEIYEKAVKILETYWLEEED---VPVSLNEDQFEFGG-ADISLPSGGFNFS 527

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/540 (69%), Positives = 439/540 (81%), Gaps = 21/540 (3%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR           
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 54  -QNQQPLANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE 111
            Q +Q L+       +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI E
Sbjct: 61  GQTEQDLS-------SANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINE 113

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
           V++SGVVPR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S 
Sbjct: 114 VVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSA 173

Query: 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           S+DVREQAVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCR
Sbjct: 174 SEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCR 233

Query: 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291
           GKP P F+Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL 
Sbjct: 234 GKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLI 293

Query: 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351
           + L H SPSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT
Sbjct: 294 QLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWT 353

Query: 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 411
           +SNITAGN +QIQAVI+A II  LV +L++AEF++KKEAAW ISNATSGGTH+QIKF+V 
Sbjct: 354 ISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVS 413

Query: 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEK 470
           QGCIKPLCDLL CPD ++VTVCLE LENIL VGEAEKNLG+T + N++ QMID+AEGLEK
Sbjct: 414 QGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEK 473

Query: 471 IESLQTHDNAEIYEKSVKLLETYWL-DDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529
           IE+LQ+HDN +IY+K+VK+LET+W  D+E+E      A Q GF FG    PP   G FNF
Sbjct: 474 IENLQSHDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTNVPP---GQFNF 530

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  593 bits (1530), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 305/518 (58%), Positives = 382/518 (73%), Gaps = 15/518 (2%)

Query: 7   SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAP 66
           SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D    
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVD---S 60

Query: 67  GTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL 126
              ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+FL 
Sbjct: 61  LINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLY 120

Query: 127 REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
            +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALGNI
Sbjct: 121 MQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNI 180

Query: 187 AGDSPRCRDLVLSQGGLVPLLAQLN--GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           AGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V  +
Sbjct: 181 AGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRAS 240

Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V  P
Sbjct: 241 LPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTP 300

Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           ALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ QIQ
Sbjct: 301 ALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQIQ 359

Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424
            VI+ANII  LV LL NAEF+I+KEAAWAISNATS GT +QI FLV QGC+KPLCDLL  
Sbjct: 360 QVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKV 419

Query: 425 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE 484
            DPRI+ V LEG+ENIL  G+ E  +  T VN + ++I+DA+GL KI  LQ H N + +E
Sbjct: 420 SDPRIINVALEGIENILVAGKKEAQV--TGVNPYKKIIEDADGLGKIYDLQHHMNKDTFE 477

Query: 485 KSVKLLETYWLD---DEDETMPPGDASQPGFGFGGNGN 519
           K  +++ TY  D   DE + MP G +    F F    N
Sbjct: 478 KVSRIISTYLEDEQEDEGDLMPEGSS----FSFSNQTN 511

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  531 bits (1368), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 285/505 (56%), Positives = 357/505 (70%), Gaps = 13/505 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446
           +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPPG 505
           E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P 
Sbjct: 455 ESKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQ 514

Query: 506 -DASQPGFGFGGNGNPPAPSGGFNF 529
            D +Q  F F     P AP  GF  
Sbjct: 515 VDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 284/505 (56%), Positives = 356/505 (70%), Gaps = 13/505 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+D  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446
           +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPPG 505
           E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P 
Sbjct: 455 EGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQ 514

Query: 506 -DASQPGFGFGGNGNPPAPSGGFNF 529
            D +Q  F F     P AP  GF  
Sbjct: 515 VDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  525 bits (1353), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/505 (56%), Positives = 355/505 (70%), Gaps = 13/505 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446
           +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPPG 505
           E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P 
Sbjct: 455 EGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQ 514

Query: 506 -DASQPGFGFGGNGNPPAPSGGFNF 529
            D +Q  F F     P AP  GF  
Sbjct: 515 VDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  525 bits (1353), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/505 (56%), Positives = 355/505 (70%), Gaps = 13/505 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446
           +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPPG 505
           E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P 
Sbjct: 455 EGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQ 514

Query: 506 -DASQPGFGFGGNGNPPAPSGGFNF 529
            D +Q  F F     P AP  GF  
Sbjct: 515 VDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
255542844	531	importin alpha, putative [Ricinus commun	0.998	0.996	0.836	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.998	0.994	0.825	0.0
224122988	529	predicted protein [Populus trichocarpa]	0.996	0.998	0.826	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.998	0.994	0.825	0.0
224123916	529	predicted protein [Populus trichocarpa]	0.994	0.996	0.826	0.0
225450645	527	PREDICTED: importin subunit alpha-1 isof	0.992	0.998	0.824	0.0
359487526	528	PREDICTED: importin subunit alpha-1 isof	0.992	0.996	0.823	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.998	0.998	0.822	0.0
357441839	533	Importin subunit alpha-1 [Medicago trunc	0.998	0.992	0.818	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.998	0.996	0.821	0.0

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/532 (83%), Positives = 489/532 (91%), Gaps = 3/532 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  QP+ 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQPMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS+DS +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAVEKKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+T+VVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQAVIEANIIGPLV LLENAEFDIKKEAAWAISNATSGGTH+QIK+LV QGCIKPLCD
Sbjct: 360 EQIQAVIEANIIGPLVHLLENAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD--VNVFTQMIDDAEGLEKIESLQTHD 478
           LL+CPDPRIVTVCLEGLENILKVGEA+KNLGN D  VN++ QMIDDAEGLEKIE+LQ+HD
Sbjct: 420 LLICPDPRIVTVCLEGLENILKVGEADKNLGNNDGGVNLYAQMIDDAEGLEKIENLQSHD 479

Query: 479 NAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           N EIYEK+VK+LETYWL++EDETMPPGDASQ GF FGG+  P  PSGGFNFS
Sbjct: 480 NIEIYEKAVKILETYWLEEEDETMPPGDASQSGFQFGGSDMPTIPSGGFNFS 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/533 (82%), Positives = 485/533 (90%), Gaps = 4/533 (0%)

Query: 1   MSLRP--NSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RP  NS+ + RRN+YKVAVDA+EGRRRRED MVEIRKN+REESLQKKRREGLQ QQ 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           +   V++    KKLE+LP MV GVW++D+ +Q E TTQFRKLLSIERSPPIEEVI++GVV
Sbjct: 60  MPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDDMQTQ +I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
           N++QIQAVIEAN+I PLV LL+NAEFDIKKEAAWAISNATSGG+HEQIKFLV QGCIKPL
Sbjct: 360 NKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPL 419

Query: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTH 477
           CDLL+CPDPRIVTVCLEGLENILKVGEA+KN+GNT DVN++ QMID+AEGLEKIE+LQ+H
Sbjct: 420 CDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSH 479

Query: 478 DNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           DN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FG +  P  PSGGFNF+
Sbjct: 480 DNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSDAPTVPSGGFNFN 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122988|ref|XP_002318966.1| predicted protein [Populus trichocarpa] gi|222857342|gb|EEE94889.1| predicted protein [Populus trichocarpa]

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/531 (82%), Positives = 483/531 (90%), Gaps = 3/531 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVW+ D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAAEKKLEHLPSMVAGVWTEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGNGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHS+D+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSDDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLANNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQAVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG HEQIK+LV QGCIKPLCD
Sbjct: 360 EQIQAVIEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGAHEQIKYLVSQGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LL+CPDPRIVTVCLEGLENILKVGEA+KN+  T  VN++ QMIDDAEGLEKIE+LQ+HDN
Sbjct: 420 LLICPDPRIVTVCLEGLENILKVGEADKNVSETGGVNLYAQMIDDAEGLEKIENLQSHDN 479

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++EDETMPPGDASQ GF FGG   P  PSGGFNFS
Sbjct: 480 TEIYEKAVKILETYWLEEEDETMPPGDASQSGFQFGGEA-PAVPSGGFNFS 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/533 (82%), Positives = 484/533 (90%), Gaps = 4/533 (0%)

Query: 1   MSLRP--NSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RP  NS+ + RRN+YKVAVDADEGRRRRED MVEIRKN+REESLQKKRREG Q QQ 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGFQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           +   V++    KKLE+LP MV GVW++D+ +Q E TTQFRKLLSIERSPPIEEVI++GVV
Sbjct: 60  IPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDDMQTQ +I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
           N++QIQAVIEAN+I PLV LL+NAEFDIKKEAAWAISNATSGG+HEQIKFLV QGCIKPL
Sbjct: 360 NKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPL 419

Query: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTH 477
           CDLL+CPDPRIVTVCLEGLENILKVGEA+KN+GNT DVN++ QMID+AEGLEKIE+LQ+H
Sbjct: 420 CDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSH 479

Query: 478 DNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           DN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FG +  P  PSGGFNF+
Sbjct: 480 DNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSDAPAVPSGGFNFN 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa]

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/530 (82%), Positives = 486/530 (91%), Gaps = 3/530 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDADEGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAIP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  AALHSSAAEKKLEHLPSMVAGVWSEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +Q+LPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQAVIEAN+IGPLV LL+NAEFDIKKE+AWAISNATSGGTHEQIK+LV QGCIKPLCD
Sbjct: 360 EQIQAVIEANLIGPLVHLLQNAEFDIKKESAWAISNATSGGTHEQIKYLVSQGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LL+CPDPRIVTVCLEGLENILKVGEA+KN+ +T  VN++ QMIDDAEGLEKIE+LQ+HDN
Sbjct: 420 LLICPDPRIVTVCLEGLENILKVGEADKNVSDTGGVNLYAQMIDDAEGLEKIENLQSHDN 479

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529
           +EIYEK+VK+LETYWL+++DETMPPGDASQ GF FGG+  P  PSGGFNF
Sbjct: 480 SEIYEKAVKILETYWLEEDDETMPPGDASQSGFQFGGDA-PAVPSGGFNF 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450645|ref|XP_002282816.1| PREDICTED: importin subunit alpha-1 isoform 1 [Vitis vinifera] gi|296089748|emb|CBI39567.3| unnamed protein product [Vitis vinifera]

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/531 (82%), Positives = 483/531 (90%), Gaps = 5/531 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKV+VDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q L 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQTLP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE LP MVAGVW++DS +Q E TTQFRKLLSIER PPIEEVI+SGVVPR
Sbjct: 60  ASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTS++TKVVIDHGAVP+FVKLL SPSDDVREQAV
Sbjct: 120 FVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPAL  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQAVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK+LV Q  IKPLCD
Sbjct: 360 EQIQAVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQASIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LLVCPDPRIVTVCLEGLENILKVGEAEKNLG+T +VN++ QMIDDAEGLEKIE+LQ+HDN
Sbjct: 420 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGSTREVNLYAQMIDDAEGLEKIENLQSHDN 479

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++EDETMPPGD+SQPGF F   G  P P+GGFNFS
Sbjct: 480 TEIYEKAVKILETYWLEEEDETMPPGDSSQPGFRF---GEVPVPTGGFNFS 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487526|ref|XP_003633608.1| PREDICTED: importin subunit alpha-1 isoform 2 [Vitis vinifera]

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/532 (82%), Positives = 483/532 (90%), Gaps = 6/532 (1%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKV+VDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q L 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQTLP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE LP MVAGVW++DS +Q E TTQFRKLLSIER PPIEEVI+SGVVPR
Sbjct: 60  ASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTS++TKVVIDHGAVP+FVKLL SPSDDVREQAV
Sbjct: 120 FVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 -VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
              PALPAL  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSP
Sbjct: 240 QTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 299

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
           SVLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ N+KKSIKKEACWT+SNITAGN
Sbjct: 300 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGN 359

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
           +EQIQAVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK+LV Q  IKPLC
Sbjct: 360 KEQIQAVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQASIKPLC 419

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHD 478
           DLLVCPDPRIVTVCLEGLENILKVGEAEKNLG+T +VN++ QMIDDAEGLEKIE+LQ+HD
Sbjct: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGSTREVNLYAQMIDDAEGLEKIENLQSHD 479

Query: 479 NAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           N EIYEK+VK+LETYWL++EDETMPPGD+SQPGF F   G  P P+GGFNFS
Sbjct: 480 NTEIYEKAVKILETYWLEEEDETMPPGDSSQPGFRF---GEVPVPTGGFNFS 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/531 (82%), Positives = 478/531 (90%), Gaps = 2/531 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN++ + RRN+YKVAVDADEGRRRREDNMVEIRK+KREESL KKRREGLQ QQ   
Sbjct: 1   MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +      KKLE+LP MVAGVWS+D+ +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 61  APLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 121 FVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVLSQG LVPLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF+Q
Sbjct: 181 WALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  L+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL + L+HPSPS
Sbjct: 241 VRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I + ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 301 VLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 360

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQ VIEA ++ PLV LL+NAEFDIKKEAAWAISNATSGG HEQIK+LV QGCIKPLCD
Sbjct: 361 EQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVSQGCIKPLCD 420

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LLVCPDPRIVTVCLEGLENILKVGEAEK+LGNT DVN + QMIDDAEGLEKIE+LQ+HDN
Sbjct: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNEYAQMIDDAEGLEKIENLQSHDN 480

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++EDET+P GD +QPGF F GN   P PSGGFNFS
Sbjct: 481 NEIYEKAVKILETYWLEEEDETLPSGDGAQPGFNF-GNNELPVPSGGFNFS 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441839|ref|XP_003591197.1| Importin subunit alpha-1 [Medicago truncatula] gi|355480245|gb|AES61448.1| Importin subunit alpha-1 [Medicago truncatula]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/533 (81%), Positives = 482/533 (90%), Gaps = 4/533 (0%)

Query: 1   MSLRPN--SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RPN  S+ + RRN+YKVAVDA+EGRRRRED MVEIRKN+REESL KKRREGLQ QQ 
Sbjct: 1   MSYRPNANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           + + +++    KKLE+LP MVAGVWS+D+ +Q E TTQFRKLLSIER+PPIEEVI++GVV
Sbjct: 60  IPSALHSNVVEKKLEHLPTMVAGVWSDDNNLQLESTTQFRKLLSIERTPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVL  G LVPLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLGHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDD+QTQ +I +QALPCL NLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDLQTQVIINHQALPCLYNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
           N++QIQAVIEANI GPLV+LL+NAEFDIKKEAAWAISNATSGG+HEQIK+LV QGCIKPL
Sbjct: 360 NKQQIQAVIEANIFGPLVSLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPL 419

Query: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTH 477
           CDLL+CPDPRIVTVCLEGLENILKVGEA+KN+GN  DVN++ QMIDDAEGLEKIE+LQ+H
Sbjct: 420 CDLLICPDPRIVTVCLEGLENILKVGEADKNIGNNGDVNLYAQMIDDAEGLEKIENLQSH 479

Query: 478 DNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           DN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FG    P  PSGGFNF+
Sbjct: 480 DNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSAEVPSVPSGGFNFN 532

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/532 (82%), Positives = 481/532 (90%), Gaps = 3/532 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN++ + RRN+YKVAVDADEGRRRREDNMVEIRK+KREESLQKKRREGLQ QQ   
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFP 60

Query: 61  NDVNAPGTA-KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP 119
             + A     KKLE+LP MVAGVWS+D+  Q E TTQFRKLLSIERSPPIEEVI++GVVP
Sbjct: 61  TPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVP 120

Query: 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQA 179
           RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 121 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQA 180

Query: 180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239
           VWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 181 VWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 240

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
           QV  ALPAL  L+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL + L+HPSP
Sbjct: 241 QVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSP 300

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
           SVLIPALRTVGNIVTGDDMQTQ +I + ALPCLL+LL+ N+KKSIKKEACWT+SNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 360

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
           R+QIQAVIEA +I PLV LL+NAEFDIKKEAAWAISNATSGGTHEQIK+LV QGCIKPLC
Sbjct: 361 RDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLC 420

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHD 478
           DLLVCPDPRIVTVCLEGLENILKVGEAEK+LGNT DVN++ QMID+AEGLEKIE+LQ+HD
Sbjct: 421 DLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDEAEGLEKIENLQSHD 480

Query: 479 NAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           N EIYEK+VK+LETYWL+D+DET+P GD +QPGF F GN + P PSGGFNFS
Sbjct: 481 NNEIYEKAVKILETYWLEDDDETLPAGDGAQPGFNF-GNNDLPVPSGGFNFS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.958	0.949	0.803	4.4e-219
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.958	0.954	0.793	2.2e-217
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.943	0.929	0.735	1.2e-198
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.943	0.941	0.709	8.3e-193
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.960	0.944	0.704	6.7e-191
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.928	0.947	0.628	2.4e-163
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.9	0.903	0.626	6.5e-154
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.930	0.955	0.596	6.7e-152
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.920	0.885	0.600	6.9e-150
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.933	0.895	0.598	7.1e-148

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2116 (749.9 bits), Expect = 4.4e-219, P = 4.4e-219
 Identities = 412/513 (80%), Positives = 457/513 (89%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ-NQQP- 58
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESLQKKRREGLQ NQ P 
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    59 -LANDVNAPGTA-KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
                + V A  T  KKLE+LP MV GVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +G
Sbjct:    61 FAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAG 120

Query:   117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
             VVPRFVEFL REDYPQLQFEAAWALTNIASGTSE+TKVVI+HGAVPIFV+LL S SDDVR
Sbjct:   121 VVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVR 180

Query:   177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
             EQAVWALGN+AGDSPRCRDLVL QG L+PLL+QLN   KLSMLRNATWTLSNFCRGKPQP
Sbjct:   181 EQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQP 240

Query:   237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             PFDQV PALPAL  LIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRL E L H
Sbjct:   241 PFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
              SPSVLIPALR++GNIVTGDD+QTQCVI + AL  LL+LL+ N+KKSIKKEACWT+SNIT
Sbjct:   301 QSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 416
             AGNR+QIQAV EA +I PLV LL+NAEFDIKKEAAWAISNATSGG+ +QIK++V QG +K
Sbjct:   361 AGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVK 420

Query:   417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQ 475
             PLCDLLVCPDPRI+TVCLEGLENILKVGEAEK  GNT DVN + Q+IDDAEGLEKIE+LQ
Sbjct:   421 PLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQLIDDAEGLEKIENLQ 480

Query:   476 THDNAEIYEKSVKLLETYWLDDEDETMPPGDAS 508
             +HDN+EIYEK+VK+LETYWL++EDET+PPGD S
Sbjct:   481 SHDNSEIYEKAVKILETYWLEEEDETLPPGDPS 513

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2100 (744.3 bits), Expect = 2.2e-217, P = 2.2e-217
 Identities = 407/513 (79%), Positives = 455/513 (88%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query:    61 NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct:    61 S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query:   121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
             FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct:   120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query:   181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
             WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct:   180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query:   241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct:   240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query:   301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
             VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct:   300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query:   361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
             +QIQ V+EAN+I PLV+LL+NAEFDIKKEAAWAISNATSGG+H+QIK+LV QGCIKPLCD
Sbjct:   360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCD 419

Query:   421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
             LLVCPDPRI+TVCLEGLENILKVGEAEKNLG+T D+N + Q+IDDAEGLEKIE+LQ+HDN
Sbjct:   420 LLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDN 479

Query:   480 AEIYEKSVKLLETYWLDDED-ETM-PPG-DASQ 509
              EIYEK+VK+LETYWL++ED ET  PPG D SQ
Sbjct:   480 NEIYEKAVKILETYWLEEEDDETQQPPGVDGSQ 512

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1923 (682.0 bits), Expect = 1.2e-198, P = 1.2e-198
 Identities = 373/507 (73%), Positives = 434/507 (85%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG--LQNQQP 58
             MSLRP+++A+ R+  YK  VDADE RRRREDN+VEIRKNKRE+SL KKRREG  LQ Q P
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    59 LANDVNAPGTA----KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR 114
             L   ++ P TA    K+LE +P+MV GV+S+D   Q E TTQFRKLLSIERSPPI+EVI+
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
             +GV+PRFVEFL R D+PQLQFEAAWALTN+ASGTS+HT+VVI+ GAVPIFVKLL S SDD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
             VREQAVWALGN+AGDSP CR+LVL+ G L PLLAQLN   KLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
               PF+QV PALP L  LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGV PRL E L
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
              H SP+VLIPALRTVGNIVTGDD QTQ +IE   LP L NLL+ N+KKSIKKEACWT+SN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC 414
             ITAGN+ QI+AV+ A II PLV LL+NAEFDIKKEAAWAISNATSGG+HEQI++LV QGC
Sbjct:   361 ITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGC 420

Query:   415 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG-NTDVNVFTQMIDDAEGLEKIES 473
             IKPLCDLL+CPDPRIVTVCLEGLENILKVGEA+K +G N+ VN++ Q+I++++GL+K+E+
Sbjct:   421 IKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVEN 480

Query:   474 LQTHDNAEIYEKSVKLLETYWLDDEDE 500
             LQ+HDN EIYEK+VK+LE YW ++E+E
Sbjct:   481 LQSHDNNEIYEKAVKILERYWAEEEEE 507

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
 Identities = 357/503 (70%), Positives = 422/503 (83%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR-REGLQNQQPL 59
             MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR    +      
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    60 ANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
                     +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI EV++SGVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S S+DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             AVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCRGKP P F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL + L H S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             PSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT+SNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
             N +QIQAVI+A II  LV +L++AEF++KKEAAW ISNATSGGTH+QIKF+V QGCIKPL
Sbjct:   361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPL 420

Query:   419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTH 477
             CDLL CPD ++VTVCLE LENIL VGEAEKNLG+T + N++ QMID+AEGLEKIE+LQ+H
Sbjct:   421 CDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSH 480

Query:   478 DNAEIYEKSVKLLETYWLDDEDE 500
             DN +IY+K+VK+LET+W +D +E
Sbjct:   481 DNNDIYDKAVKILETFWTEDNEE 503

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1850 (656.3 bits), Expect = 6.7e-191, P = 6.7e-191
 Identities = 363/515 (70%), Positives = 424/515 (82%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQ---Q 57
             MS +P++K + RRN+YKV+VDADEGRRRREDNMVEIRKNKREE+LQKKRREG       Q
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    58 PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             P  +  ++  T  +LEN+  M+AGV S D  +Q E T  FR+LLSIER+PPI EV++SGV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
             VP  V+FL R+D+ QLQFEAAWALTNIASGTSE+T+V+ID GAVP+FVKLL S S++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
             QAVWALGN+AGDSP+CRD VLS   ++ LLAQ +   KLSMLRNATWTLSNFCRGKPQP 
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   238 FDQ-VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             F+Q    ALPAL  L+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRL + L H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
             PSPSVLIPALRT+GNIVTGDD+QTQ VI  QALP LLNLL   YKKSIKKEACWT+SNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 416
             AGN  QIQ V +A II PL+ LLE  EF+IKKEA WAISNATSGG H+QIKFLV QGCI+
Sbjct:   361 AGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIR 420

Query:   417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQ 475
             PLCDLL CPDPR+VTV LEGLENILKVGEAEKNLGNT + N++ QMI+DA+GL+KIE+LQ
Sbjct:   421 PLCDLLPCPDPRVVTVTLEGLENILKVGEAEKNLGNTGNDNLYAQMIEDADGLDKIENLQ 480

Query:   476 THDNAEIYEKSVKLLETYWL-DDEDETMPPGDASQ 509
             +HDN EIYEK+VK+LE+YW  DDE+E +   DA +
Sbjct:   481 SHDNNEIYEKAVKILESYWAADDEEEDIGGVDAPE 515

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1590 (564.8 bits), Expect = 2.4e-163, P = 2.4e-163
 Identities = 315/501 (62%), Positives = 389/501 (77%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL--QNQQP 58
             MSLRP++K + RR +YKV+VDA+EGRRRRED +VEIRK+KR E+L KKRR  +   + + 
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVLPPDYKL 60

Query:    59 LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
             ++ND   P   + L  +  M+ GV+S+D  +Q E TT+FR +LS +RSPP + VI+SGVV
Sbjct:    61 ISND---P--FESLLEIANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVV 115

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PRFVEFL ++D P+LQFEAAWALTNIASG SEHTKVVIDHG VP+FV+LL SP DDVREQ
Sbjct:   116 PRFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQ 175

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             A+W LGN+AGDS +CRD VL+ G  +PLL QLN    LS+LRNATWTLSNF RGKP PPF
Sbjct:   176 AIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPF 235

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             D V   LP L  L++S+D++VL DACWALS LSD +N+ IQ+VIEAGV PRL E L H S
Sbjct:   236 DLVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHAS 295

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             P VL+PALR +GNIV+G+  QT CVI    LP L +LL+ N+ + I++EACWT+SNITAG
Sbjct:   296 PVVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAG 355

Query:   359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
               EQIQ+VI+AN+I  LV L ++AEFDIKKEA WAISNA+ GG+  QIK+LV Q CIK L
Sbjct:   356 LEEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKAL 415

Query:   419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD 478
             CD+LVCPD RI+ V L GLE IL  GE +KNL   DVN ++QMI+DAEGLEKIE+LQ H 
Sbjct:   416 CDILVCPDLRIILVSLGGLEMILIAGEVDKNL--RDVNCYSQMIEDAEGLEKIENLQHHG 473

Query:   479 NAEIYEKSVKLLETYWLDDED 499
             N EIYEK+VK+L+TY L +ED
Sbjct:   474 NNEIYEKAVKILQTYGLVEED 494

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1501 (533.4 bits), Expect = 6.5e-154, P = 6.5e-154
 Identities = 312/498 (62%), Positives = 376/498 (75%)

Query:    12 RRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKK 71
             RR+ YK  VD   GRRRRED+MVEIRK KREESL KKRRE L +  P A+ ++     +K
Sbjct:    10 RRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALPHS-PSADSLD-----QK 63

Query:    72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDY 130
             L      ++ +WS++  +  E TTQ R LL  E  +  +EEVI++G+VPRFVEFL  +D 
Sbjct:    64 L------ISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDS 117

Query:   131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             PQLQFEAAWALTNIASGTSE+T+VVIDHGAV I V+LL SP D VREQ VWALGNI+GDS
Sbjct:   118 PQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDS 177

Query:   191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             PRCRD+VL    L  LL QLN   KLSML NA WTLSN CRGKPQPPFDQVS ALPALA 
Sbjct:   178 PRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQ 237

Query:   251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
             LI  +D E+L   CWAL YLSDG+N+KIQAVIEA V  RL    +H SPSV+ PALRT+G
Sbjct:   238 LIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIG 297

Query:   311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
             NIVTG+D QTQ +I+ QALPCL+NLL G+Y K+I+KEACWTVSNITAG + QIQAV +A+
Sbjct:   298 NIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDAD 357

Query:   371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430
             I   LV LL+N+E D+KKEAAWAI NA +GG+++QI FLV Q CIKPLCDLL C D ++V
Sbjct:   358 ICPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLV 417

Query:   431 TVCLEGLENILKVGE------AEK--NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI 482
              VCLE L+ ILKVGE      AE       T+VN   Q+I++AEGLEKIE LQ+H+N +I
Sbjct:   418 MVCLEALKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDI 477

Query:   483 YEKSVKLLETYWLDDEDE 500
             YE +VK+LETYW+++E+E
Sbjct:   478 YETAVKILETYWMEEEEE 495

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
 Identities = 303/508 (59%), Positives = 381/508 (75%)

Query:     7 SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND--VN 64
             SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D  +N
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN 63

Query:    65 APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
                  ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct:    64 -----QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query:   125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
             L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALG
Sbjct:   119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query:   185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQVS 242
             NIAGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V 
Sbjct:   179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query:   243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
              +LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V 
Sbjct:   239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query:   303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
              PALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ Q
Sbjct:   299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQ 357

Query:   363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 422
             IQ VI+ANII  LV LL NAEF+I+KEAAWAISNATS GT +QI FLV QGC+KPLCDLL
Sbjct:   358 IQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLL 417

Query:   423 VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI 482
                DPRI+ V LEG+ENIL  G+ E  +  T VN + ++I+DA+GL KI  LQ H N + 
Sbjct:   418 KVSDPRIINVALEGIENILVAGKKEAQV--TGVNPYKKIIEDADGLGKIYDLQHHMNKDT 475

Query:   483 YEKSVKLLETYWLD---DEDETMPPGDA 507
             +EK  +++ TY  D   DE + MP G +
Sbjct:   476 FEKVSRIISTYLEDEQEDEGDLMPEGSS 503

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1463 (520.1 bits), Expect = 6.9e-150, P = 6.9e-150
 Identities = 304/506 (60%), Positives = 370/506 (73%)

Query:    10 DSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAN------ 61
             + RR ++K       +E RRRRE+  VEIRK KREE+L K+R  G    +P A+      
Sbjct:     8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67

Query:    62 --DVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP 119
               D  AP  ++  E+LP MV GV+S     Q + TT+FRKLLS ER+PPIEEVI++GVV 
Sbjct:    68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127

Query:   120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQA 179
             RFVEFL R  +  +QFEAAWALTNIASG++  T+VVI+ GAVPIFV+LL SP  DVREQA
Sbjct:   128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186

Query:   180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF 238
             VWALGNIAGDSP+CRD VLS G L PLL  L    KLSMLRNATWTLSNFCRGK PQP +
Sbjct:   187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
               ++PALP LA L++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RL E LMH S
Sbjct:   247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              SV  PALR+VGNIVTGDD+QTQ +I   ALPCLL+LL  N K  I+KEACWT+SNITAG
Sbjct:   307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAG 365

Query:   359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIK 416
             N  QIQ+V++ANII PL+ LL N +   +KEA WAISNATSGG    +QI++LV QGCIK
Sbjct:   366 NSAQIQSVVDANIIPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIK 425

Query:   417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL---GNTDVNVFTQMIDDAEGLEKIES 473
             PLCDLL CPD +I+ V L+GLENILKVG+ +K     G   +N +   I++  G+EKI  
Sbjct:   426 PLCDLLSCPDNKIIQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHE 485

Query:   474 LQTHDNAEIYEKSVKLLETYWLDDED 499
              QT+ N EIY K+  ++E Y+ DD++
Sbjct:   486 CQTNANEEIYMKAFNIIEKYFSDDDE 511

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1444 (513.4 bits), Expect = 7.1e-148, P = 7.1e-148
 Identities = 309/516 (59%), Positives = 371/516 (71%)

Query:    10 DSRRNKYKVAVD--ADEGRRRREDNMVEIRKNKREESLQKKR----REG---LQNQQPLA 60
             + RR +YK       DE RRRRE+  VEIRK KREE+L K+R    R+G   +      A
Sbjct:     8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67

Query:    61 -NDVNAPGTAKKLE-NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
              +D  A     +L   LP MV GV+S+    Q + TT+FRKLLS ER+PPIE VI +GVV
Sbjct:    68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              RFVEFL R  +  +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV+LL SP  DVREQ
Sbjct:   128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237
             AVWALGNIAGDSP+CRD VL+ G L PLL  +N   K+SMLRNATWTLSNFCRGK PQP 
Sbjct:   187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246

Query:   238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
             ++ ++PALP LA LI+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RL E LMH 
Sbjct:   247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306

Query:   298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
             S SV  PALR+VGNIVTGDD+QTQ +I   ALP LL+LLS   K  I+KEACWT+SNITA
Sbjct:   307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITA 365

Query:   358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCI 415
             GN  QIQ+VI+A II PLV LL N +F  +KEA WAISNATSGG    +QI++LV QGCI
Sbjct:   366 GNSSQIQSVIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCI 425

Query:   416 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD--VNVFTQMIDDAEGLEKIES 473
             KPLCDLL CPD +I+ V L+GLENILKVGE +K  G  D  VN +   I++A G+EKI  
Sbjct:   426 KPLCDLLACPDNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHD 485

Query:   474 LQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQ 509
              Q + N EIY K+  ++E Y+  DEDE    GD  +
Sbjct:   486 CQNNANEEIYMKAYNIIEKYF-SDEDEAA--GDIDE 518

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5643	0.9283	0.9179	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4397	0.9603	0.9902	yes	no
O14063	IMA1_SCHPO	No assigned EC number	0.5093	0.9679	0.9464	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5623	0.9283	0.9179	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5277	0.9716	0.9501	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7865	0.9962	0.9924	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5888	0.9490	0.9748	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7740	0.9924	0.9981	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5623	0.9283	0.9179	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5623	0.9283	0.9179	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7831	0.9754	0.9828	no	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.7873	0.9924	0.9850	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIII0659 hypothetical protein (529 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	530
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.0
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-36
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-32
pfam01749	97	pfam01749, IBB, Importin beta binding domain	8e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-21
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-11
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-11
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-10
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	1e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-08
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	7e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	4e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	8e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-05
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	5e-04
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.001
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.003
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.003

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  586 bits (1512), Expect = 0.0
 Identities = 279/533 (52%), Positives = 351/533 (65%), Gaps = 12/533 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
            + R   +A     K K    ADE RRRRE+  VE+RK KREE L K+R   L +    A
Sbjct: 1   STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRR--NLADVSEEA 58

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
                P   +    LP +   ++S+D   Q +   +FRKLLS E SPPI+ VI +GVVPR
Sbjct: 59  ESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPR 118

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEF+       LQFEAAWALTNIASGT++ TKVV+D GAVP+F++LL S  DDVREQAV
Sbjct: 119 FVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAV 178

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK-PQPPF 238
           WALGNIAGDS  CRD VL  G L PLL  L      +SMLRNATWTLSN CRGK P P +
Sbjct: 179 WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +S ALP LA LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RL E L H S
Sbjct: 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES 298

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             +  PALR+VGNIVTG D QTQ +I   AL    +LLS + K++I+KEACWT+SNITAG
Sbjct: 299 AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAG 357

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIK 416
           N EQIQAVI+AN+I PL+ LL +AE+ IKKEA WAISNATSGG +  + I++LV QG IK
Sbjct: 358 NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIK 417

Query: 417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476
           PLCDLL   D +I+ V L+ +ENILKVGE ++     ++N++   ++ A G++ I  LQ 
Sbjct: 418 PLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQD 477

Query: 477 HDNAEIYEKSVKLLETYWLD-DEDETMPPGDASQPGFGFGGNGNPPAPSGGFN 528
             N  IY+K+  ++E ++ + D  + + P  A    F FG N       G FN
Sbjct: 478 SVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN-TFTFGSN---VNQQGNFN 526

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  131 bits (331), Expect = 2e-36
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           E VI++G +P  V  LL      +Q EAAWAL+N+++G +++ + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVS-LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           S  ++V + A+WAL N+A      + +VL  GG VP L  L       + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 230 CR 231
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  118 bits (298), Expect = 7e-32
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           +  LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P L + L      V
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  AL  + N+  G +     V+E   +P L+NLL  +  + I+K A   +SN+ +
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  114 bits (288), Expect = 8e-31
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 4  RPNSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND 62
             +K + RR  YK    DA+E RRRRE+  VE+RKNKREE L K+R  GL  +     +
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60

Query: 63 VNAPGTA---KKLENLPVMVAGVWSNDSGVQYECTTQ 96
              G++   +    LPVMV GV S+D   Q   T  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 90.5 bits (225), Expect = 9e-22
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 12/131 (9%)

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           +AVI+A  +  LV+LL +++ ++++EAAWA+SN ++G  ++ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483
             D  +V   L  L N+    E  K            ++ +A G+ K+ +L    N +I 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNK-----------LIVLEAGGVPKLVNLLDSSNEDIQ 108

Query: 484 EKSVKLLETYW 494
           + +   L    
Sbjct: 109 KNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
           S+D  VQ E       L S   +  I+ V+ +G +P  V+ L  ED  ++   A WAL N
Sbjct: 18  SSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRN 75

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           +A+G  ++  +V++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 76  LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.5 bits (220), Expect = 4e-21
 Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
           VI+   LP L++LLS +  +++++EA W +SN++AGN + IQAV+EA  +  LV LL++ 
Sbjct: 3   VIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 383 EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
           + ++ K A WA+ N  +G   +    ++  G +  L +LL   +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           + E+ + VI+ GAVP  V+LL SP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 57.8 bits (141), Expect = 3e-11
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
             E+ + V+D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.8 bits (133), Expect = 4e-10
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399
           + E  QAVIEA  + PLV LL + + ++++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
            +++  AA AL  +A G  E  +  +    +P  + LL    D+VRE A WALG I
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 106 SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
               + VI +G VP  V+ LL     ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQ-LLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.0 bits (118), Expect = 5e-08
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 105 RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
                + V+ +G +P  VE LL+ +  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.8 bits (115), Expect = 9e-08
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399
           + E  QAV++A  +  LV LL++ + ++ KEAAWA+SN +S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +   +E LL +  P+++  AA AL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 178 QAVWALGNIAGDS 190
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
           + +  QAVIEAG  P L + L  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
                Q VIE  A+P L+ LLS    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           + A+P L  L+ S D+EV  +A WALS L+ 
Sbjct: 11  AGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
            ++  QAV++AG  P L E L      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSD 272
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 402 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
             E  + +V  G +  L +LL   D  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           DD   Q V++   LP L+ LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           VRE A  ALG +AG  P      + +  L+P L  L       +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.7 bits (94), Expect = 8e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 402 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
           + E  + ++  G + PL  LL  PD  +       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           SP  +  V+  G + PL+  L+  P   +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLS-SPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 52/252 (20%), Positives = 85/252 (33%), Gaps = 49/252 (19%)

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
            +  LL ++   ++  AA AL  + S             AVP+  +LL      VR+ A 
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAA 95

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
            ALG +    P           + PL+  L       +   A   L      +       
Sbjct: 96  DALGEL--GDPEA---------VPPLVELLENDENEGVRAAAARAL-GKLGDE-----RA 138

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---FPRLAEFLMHP 297
           + P L AL      +    L  A   +   +       +A+ E G     P L E L   
Sbjct: 139 LDPLLEALQDEDSGSAAAALDAALLDVRAAA------AEALGELGDPEAIPLLIELLEDE 192

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G +  G +         +A   L+  LS +    ++K A   +  I  
Sbjct: 193 DADVRRAAASALGQL--GSEN-------VEAADLLVKALS-DESLEVRKAALLALGEI-- 240

Query: 358 GNREQIQAVIEA 369
           G+ E + A+ +A
Sbjct: 241 GDEEAVDALAKA 252

Length = 335

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIA 187
           +P+ ++LL  P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270
             A   L     G P+     V   LPAL  L+  +DDEV   A WAL  +
Sbjct: 5   EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
           + E+     +P  +E LL++  P+++  AA AL  +            D  A+P  ++LL
Sbjct: 24  LGELGDPEALPALLE-LLKDPDPEVRRAAAEALGKLG-----------DPEALPALLELL 71

Query: 169 YSPSDD-VREQAVWALG 184
               D  VR  A  AL 
Sbjct: 72  QDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	530
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.88
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.82
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.78
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.77
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.77
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.77
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.74
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.72
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.69
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.66
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.66
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.65
PRK09687	280	putative lyase; Provisional	99.63
PRK09687	280	putative lyase; Provisional	99.62
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.61
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.6
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.6
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.6
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.56
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.56
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.52
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.49
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.48
PTZ00429	746	beta-adaptin; Provisional	99.48
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.47
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.46
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.46
PTZ00429	746	beta-adaptin; Provisional	99.44
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.43
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.42
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.42
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.4
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.39
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.32
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.24
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.22
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.18
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.15
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.11
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.1
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.09
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.08
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.04
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.01
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.99
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.96
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.93
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.91
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.89
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.89
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.87
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.81
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.8
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.77
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.75
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.75
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.74
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.73
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.73
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.7
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.7
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.67
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.67
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.6
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.6
COG5369	743	Uncharacterized conserved protein [Function unknow	98.57
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.56
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.54
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.5
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.5
COG5369	743	Uncharacterized conserved protein [Function unknow	98.49
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.48
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.48
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.48
PF05536	543	Neurochondrin: Neurochondrin	98.48
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.45
TIGR02270	410	conserved hypothetical protein. Members are found	98.41
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.4
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.4
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.37
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.35
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.34
TIGR02270	410	conserved hypothetical protein. Members are found	98.33
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.31
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.24
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.21
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.19
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.17
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.17
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.17
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.16
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.13
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.11
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.11
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.09
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.09
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.09
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.08
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.08
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.02
PF05536	543	Neurochondrin: Neurochondrin	98.02
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.02
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.01
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.0
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.98
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.97
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.95
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.88
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.86
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.83
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.83
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.81
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.8
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.79
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.79
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.79
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.77
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.77
KOG0567	289	consensus HEAT repeat-containing protein [General	97.73
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.69
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.62
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.59
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.58
KOG0567	289	consensus HEAT repeat-containing protein [General	97.55
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.5
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.46
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.45
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.45
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.43
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.43
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.41
PRK14707	2710	hypothetical protein; Provisional	97.38
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.38
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.37
PRK14707	2710	hypothetical protein; Provisional	97.37
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.36
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.36
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.35
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.32
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.3
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.25
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.22
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.21
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.19
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.19
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.17
PF05004	309	IFRD: Interferon-related developmental regulator (	97.1
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.09
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.06
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.01
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.0
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.99
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.91
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.84
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.8
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.79
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.75
PF05004	309	IFRD: Interferon-related developmental regulator (	96.72
KOG3036	293	consensus Protein involved in cell differentiation	96.71
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.69
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.68
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.67
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.63
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.56
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.51
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.5
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.49
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.47
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.4
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.4
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.36
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.33
KOG1243	690	consensus Protein kinase [General function predict	96.3
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.25
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.25
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.23
KOG2956	516	consensus CLIP-associating protein [General functi	96.19
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.19
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.15
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.14
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.97
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.95
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.78
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.77
KOG2956	516	consensus CLIP-associating protein [General functi	95.77
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.72
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.72
KOG3036	293	consensus Protein involved in cell differentiation	95.69
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.65
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.57
KOG2025	892	consensus Chromosome condensation complex Condensi	95.54
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.48
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.48
KOG1243	690	consensus Protein kinase [General function predict	95.41
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.4
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.39
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.39
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.37
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.37
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.28
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	95.11
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	95.11
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.11
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.1
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.94
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.91
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.63
KOG2025	892	consensus Chromosome condensation complex Condensi	94.58
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.42
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.42
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.37
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	94.33
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.26
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.23
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.22
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.2
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.17
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.02
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.99
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.95
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.92
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.91
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.56
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.66
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.64
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.62
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	92.57
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.42
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.41
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.41
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	92.4
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.38
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.37
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	92.36
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.31
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.25
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.17
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	92.14
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	92.08
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.95
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.93
KOG2005	878	consensus 26S proteasome regulatory complex, subun	91.77
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	91.68
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	91.67
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	91.67
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	91.64
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	91.29
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.98
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	90.93
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	90.9
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	90.83
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	90.63
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	90.47
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	90.35
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	90.17
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	89.53
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	89.21
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	89.07
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	89.02
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	88.88
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.81
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.76
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	88.6
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	88.49
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	88.39
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	87.81
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	87.81
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	87.22
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	87.03
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.97
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	86.9
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.64
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	86.27
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	86.03
cd03561	133	VHS VHS domain family; The VHS domain is present i	86.01
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	85.57
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	85.13
cd03561	133	VHS VHS domain family; The VHS domain is present i	85.08
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	85.05
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.03
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	84.66
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.07
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.95
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	83.74
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	83.66
PF04821	266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	83.0
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	82.66
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	82.2
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	80.65
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	80.42
smart00509	75	TFS2N Domain in the N-terminus of transcription el	80.21
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	80.17
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	80.14

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.6e-88  Score=596.69  Aligned_cols=514  Identities=53%  Similarity=0.837  Sum_probs=468.2

Q ss_pred             CCchHhhhhcCC--CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcC
Q 009636            7 SKADSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWS   84 (530)
Q Consensus         7 ~~~~~~~~~~k~--~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s   84 (530)
                      +.+++|+.+||.  .++++|+||||++.+++|||+||++.++||||.....+...++  -.+..++....+|.+.+.|.|
T Consensus         5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss--~i~meqq~~~elp~lt~~l~S   82 (526)
T COG5064           5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS--FIPMEQQFYSELPQLTQQLFS   82 (526)
T ss_pred             cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc--cCchhHHhhhhhHHHHHHHhh
Confidence            367889999998  4889999999999999999999999999999983322211111  012233334578999999999


Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009636           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  164 (530)
                      +|-+.|..|...+|+++|.+.+|+++.+++.|++|.++++|.......++++|+|+|+|+++++..+++.+++.|++|.+
T Consensus        83 dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlf  162 (526)
T COG5064          83 DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF  162 (526)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHH
Confidence            99999999999999999999999999999999999999999654436889999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHHhhhhccCC-CCCChhhhh
Q 009636          165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGK-PQPPFDQVS  242 (530)
Q Consensus       165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~~~~  242 (530)
                      +++|.+++.+++++++|+|+|++++++.+|+.++..|++.+++.++..+. +..+.+++.|+|+|||++. |.+......
T Consensus       163 iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is  242 (526)
T COG5064         163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS  242 (526)
T ss_pred             HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH
Confidence            99999999999999999999999999999999999999999999996433 5799999999999999998 777788889


Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009636          243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC  322 (530)
Q Consensus       243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~  322 (530)
                      ..+|.|.+++.+.|+++..++||+++++++.+.+.++.+++.|+..+|+++|.+++..++.+|++.+||+++|++.+++.
T Consensus       243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv  322 (526)
T COG5064         243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV  322 (526)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC-
Q 009636          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG-  401 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-  401 (530)
                      +++.|+++.+..+|+++ ...+|++|||+++|+++|+.++++.+++.+++|+|+++|...+..++++||||+.|.+.++ 
T Consensus       323 iI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~  401 (526)
T COG5064         323 IINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL  401 (526)
T ss_pred             heecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            99999999999999999 8899999999999999999999999999999999999999999999999999999999977 


Q ss_pred             -CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009636          402 -THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA  480 (530)
Q Consensus       402 -~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~  480 (530)
                       -|+.+++|+++|++++|+++|...+.++.+.+++++.++++.++..........|.|..++++.||++.|..+|++.|.
T Consensus       402 ~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~  481 (526)
T COG5064         402 NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNR  481 (526)
T ss_pred             CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcccc
Confidence             4789999999999999999999999999999999999999999988777666788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCC--CCCCCCCCCCcccCCCCCCCCCCCCCc
Q 009636          481 EIYEKSVKLLETYWLDDEDET--MPPGDASQPGFGFGGNGNPPAPSGGFN  528 (530)
Q Consensus       481 ~v~~~a~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (530)
                      +||.+|..||++||++++.-+  +|++.+  ..|+|.++.   .+.|.|+
T Consensus       482 ~iy~KAYsIIe~fFgeeD~vd~lapet~g--~tftfg~~~---~~qg~f~  526 (526)
T COG5064         482 TIYDKAYSIIEKFFGEEDAVDELAPETAG--NTFTFGSNV---NQQGNFN  526 (526)
T ss_pred             HHHHHHHHHHHHHcccchhhhhcCccccC--CeeecCCCc---cccCCCC
Confidence            999999999999999887533  677654  378887664   4555453

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-85  Score=623.99  Aligned_cols=508  Identities=65%  Similarity=1.014  Sum_probs=461.1

Q ss_pred             chHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCh
Q 009636            9 ADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDS   87 (530)
Q Consensus         9 ~~~~~~~~k~-~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~   87 (530)
                      ..+|+++||+ +++++|+||||++..+++||.||++.++|||+...+....  .  .....+......+.++..+.|+++
T Consensus         5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~S~~~   80 (514)
T KOG0166|consen    5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLD--E--LLSDSQSQASNLELMLAALYSDDP   80 (514)
T ss_pred             hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccc--c--ccchhHHHhhhhHHHHHHHhCCCH
Confidence            3467777776 6999999999999999999999999999999932221110  0  011112222347899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009636           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (530)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  167 (530)
                      ..+..+...++++++...+|++..++..|++|.+|++|...+++.++.+|+|+|+|+++++++....+++.|++|.|+++
T Consensus        81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L  160 (514)
T KOG0166|consen   81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL  160 (514)
T ss_pred             HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence            99999999999999998899999999999999999999876669999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHH
Q 009636          168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALP  246 (530)
Q Consensus       168 l~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~  246 (530)
                      +.+++..++++|+|+|+|++++++.+|+.++..|++++|+.++..+....+.++++|+|+|||+++ |.+.......++|
T Consensus       161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp  240 (514)
T KOG0166|consen  161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP  240 (514)
T ss_pred             hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999965555689999999999999999 8888899999999


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc
Q 009636          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~  326 (530)
                      .|..++.+.|++++.++||+++||++++.+.++.+++.|+++.|+++|.+.++.++.+|++++||+++|++.+++.+++.
T Consensus       241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~  320 (514)
T KOG0166|consen  241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS  320 (514)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH
Q 009636          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI  406 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~  406 (530)
                      |+++.|..++...+...++++|||+|+||++|+.++++.++++|++|.|+.+|+.++.++|++|+||++|++.+++++++
T Consensus       321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi  400 (514)
T KOG0166|consen  321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI  400 (514)
T ss_pred             ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence            99999999999554777999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009636          407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS  486 (530)
Q Consensus       407 ~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a  486 (530)
                      .+|++.|++++|+++|...|.+++..+++++.++++.++......+   +++..+++++||+++|+.||+|+|++||++|
T Consensus       401 ~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~---n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A  477 (514)
T KOG0166|consen  401 KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT---NPLAIMIEEAGGLDKIENLQSHENEEIYKKA  477 (514)
T ss_pred             HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHccChhHHHHhhccccHHHHHHH
Confidence            9999999999999999999999999999999999999998764321   7899999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009636          487 VKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF  529 (530)
Q Consensus       487 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (530)
                      ..||++||.++++++....  ...+|+|.++    .|.|+|||
T Consensus       478 ~~II~~yf~~e~~~~~~~~--~~~~~~~~~~----~~~~~f~f  514 (514)
T KOG0166|consen  478 YKIIDTYFSEEDDEDDQQP--TTSQFTFQVQ----APDGGFNF  514 (514)
T ss_pred             HHHHHHhcCCCcccccccc--cccccccCCC----CCCCCCCC
Confidence            9999999998765542221  1126777655    38899998

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-43  Score=337.04  Aligned_cols=368  Identities=26%  Similarity=0.403  Sum_probs=329.4

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.+|.+++.|.. .++.+|+.|+|+|.+++++. ....+.+++.|++|.|+.++.+++ ..++++|+|+|+|++.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            799999999985 55999999999999999986 677788899999999999999999 999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      ++.+++.|+++.|+.++..++. .+..++.|+|+|+|.+.......-.-..+++.|..++ ++.|++++..+||++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999987654 6888999999999977632222223345789999999 8999999999999999999


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHH
Q 009636          231 RGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT  308 (530)
Q Consensus       231 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~al~~  308 (530)
                      .+. +........|++|.|+.+|.+.+..++..++++++|++.+++...+.++..|+++.|..++. +....++..|+|+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            887 44455667999999999999999999999999999999999999999999999999999999 5667799999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      ++||+.|+.++.+.+++.|++|.|+.+|+.. +.++|++|+|+++|++. ++++++.++++.|+|++|+.+|...|.++.
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii  424 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII  424 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence            9999999999999999999999999999999 99999999999999998 789999999999999999999998899999


Q ss_pred             HHHHHHHHHhhcCCC-------HHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          388 KEAAWAISNATSGGT-------HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~-------~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ..++.+|.|+...+.       ......+.+.|+++.+-.+-.+++.++-..|...+.+.+...
T Consensus       425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            999999999986442       234456667899999988888888899998888888776543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.4e-43  Score=312.44  Aligned_cols=372  Identities=24%  Similarity=0.342  Sum_probs=323.8

Q ss_pred             Cchhhhc--CCHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 009636           66 PGTAKKL--ENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT  142 (530)
Q Consensus        66 ~~~~~~~--~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~  142 (530)
                      ++++..+  +.+|++++++. ....-.+++|+|+|.+++|+. ....+.+++.|++|.++++|.+++ .+++.+++|+|+
T Consensus       105 PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALG  182 (526)
T COG5064         105 PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALG  182 (526)
T ss_pred             CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhc
Confidence            4444433  68999999995 556668999999999999986 566777889999999999999998 899999999999


Q ss_pred             HHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHH
Q 009636          143 NIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR  220 (530)
Q Consensus       143 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~  220 (530)
                      |++.+++.+++.+.+.|++..++.++.+.  +..+...+.|+|+|+|.+.....+.-.-...++.|.+++ .+.|+++..
T Consensus       183 NiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlv  261 (526)
T COG5064         183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLV  261 (526)
T ss_pred             cccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHH
Confidence            99999999999999999999999999774  357889999999999965422222222233788889998 889999999


Q ss_pred             HHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc
Q 009636          221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP  299 (530)
Q Consensus       221 ~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  299 (530)
                      .|||++++|+.+. .........|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.++..|+++.+..+|+++..
T Consensus       262 DA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke  341 (526)
T COG5064         262 DACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE  341 (526)
T ss_pred             HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh
Confidence            9999999999987 334445567888899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHH
Q 009636          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLV  376 (530)
Q Consensus       300 ~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~  376 (530)
                      .++..|||+++|+..|+.++.+.+++.+++|.|+++|.+. +..++++|||+++|.+++   -|+.+++++..|+|++|+
T Consensus       342 ~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc  420 (526)
T COG5064         342 NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC  420 (526)
T ss_pred             hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence            9999999999999999999999999999999999999998 999999999999999984   689999999999999999


Q ss_pred             HHHhcCchhHHHHHHHHHHHhhcCCC---------H-HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636          377 ALLENAEFDIKKEAAWAISNATSGGT---------H-EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       377 ~ll~~~~~~v~~~a~~aL~nl~~~~~---------~-~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll  441 (530)
                      .+|...+.++-+-++.++-|+...|.         + .+..++-+.|+++.+..+-++.+.++-..|-.++..++
T Consensus       421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF  495 (526)
T COG5064         421 DLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF  495 (526)
T ss_pred             HHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence            99999888888999999999987652         2 34445556899999999999999888888777666555

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2e-39  Score=354.83  Aligned_cols=408  Identities=20%  Similarity=0.215  Sum_probs=344.7

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      -+.+|.++..|.++++..|..|+..+.+++... .+.+..+++.|++|.|+++|.+++++.+|++|+|+|++|+.+++++
T Consensus       188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            379999999999999999999999998887664 4578889999999999999987654799999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHhhhCCCch-----------hhhh---HhhcCChHHHHH
Q 009636          152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRDL---VLSQGGLVPLLA  208 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~---------~~i~~~a~~~L~nl~~~~~~-----------~~~~---i~~~~~i~~Ll~  208 (530)
                      ++.+++.|+++.|+.++.+++         ..++++|+|+|+|||++.+.           .|+.   ....|++.+++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999997644         34689999999999987543           2221   134577888888


Q ss_pred             hhcCCCchhHH----HHHHHHhhhhccCC-CCCChh-------------------hhhchHHHHHHhhcCCChhHHHHHH
Q 009636          209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFD-------------------QVSPALPALAHLIHSNDDEVLTDAC  264 (530)
Q Consensus       209 ll~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~-------------------~~~~~l~~L~~ll~~~d~~v~~~a~  264 (530)
                      ++ +..+....    ..++|+|.+|+++. +.....                   ...++++.|+.++...+.+++..++
T Consensus       347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av  425 (2102)
T PLN03200        347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI  425 (2102)
T ss_pred             hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence            77 44443333    35789999999987 332111                   1245677888999999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhH
Q 009636          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (530)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  344 (530)
                      |+|.+++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.+++.++..+++.|++|.|+.+|.++ +..+
T Consensus       426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i  504 (2102)
T PLN03200        426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA  504 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence            999999999889999999999999999999999999999999999999999998888999999999999999998 9999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009636          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC  424 (530)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~  424 (530)
                      +++|+|+|+|++.+++.....+.+.|+++.|+++|.++++++++.|+|+|.|++..++.+.         ++.++.+|..
T Consensus       505 qeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLls  575 (2102)
T PLN03200        505 KEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLLG  575 (2102)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhcC
Confidence            9999999999998754444444478999999999999999999999999999998776553         4677888999


Q ss_pred             CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCC
Q 009636          425 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDED  499 (530)
Q Consensus       425 ~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~  499 (530)
                      +++.++..++.++.+++...+....        ........||++.|.+|+.++++++++.|.++|..||.+..+
T Consensus       576 dd~~~~~~aL~vLgnIlsl~~~~d~--------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        576 DLPESKVHVLDVLGHVLSVASLEDL--------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             CChhHHHHHHHHHHHHHhhcchhHH--------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            9999999999999999886654221        123344579999999999999999999999999999986544

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=341.31  Aligned_cols=415  Identities=19%  Similarity=0.191  Sum_probs=367.7

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.|+.+|...+.+.|..++++|..++.++ ...++.+.+.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            56788999999999999999999999997664 677889999999999999999988 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|++++|+++| .+.+...+..++|+|.+|+..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998887888888899999999999 677899999999999999754


Q ss_pred             CCCCC--------------------------------------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636          233 KPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       233 ~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .....                                      .....++++.|+.++.++++.++..++|+|.+++.+.
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            31110                                      0012478999999999999999999999999999999


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      .+..+.++..|+++.++.+|.+++..++..++++|++++.+.. .+...+++.|+++.|+.+|.+. +..++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999997543 4455678999999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH-H-HHHHHcCChHHHHhccCCCChHHHH
Q 009636          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-I-KFLVIQGCIKPLCDLLVCPDPRIVT  431 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~i~~L~~lL~~~~~~~~~  431 (530)
                      |++... +....+.+.|+++.|+++|++++++.|+.|+|+|.+++.+.+.++ . .++...|.+.+|+++|+..|.+...
T Consensus       720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~  798 (2102)
T PLN03200        720 NLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA  798 (2102)
T ss_pred             HHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence            998864 456677788999999999999999999999999999999876554 3 6667889999999999999888777


Q ss_pred             H--HHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636          432 V--CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       432 ~--al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                      .  ++++|..+.+..+....    ..+++...++..++++.|.....+.+|.++++|.++|+++-.+
T Consensus       799 ~~~al~~l~~l~~~~~~~~~----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~  861 (2102)
T PLN03200        799 TSEALEALALLARTKGGANF----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD  861 (2102)
T ss_pred             HHHHHHHHHHHHhhcccCCC----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence            6  99999999986554433    3578999999999999997777999999999999999998663

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1e-29  Score=227.89  Aligned_cols=363  Identities=20%  Similarity=0.221  Sum_probs=313.1

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +...+++..+++.++.+|..|..++.+++-.  ....-.++..+.+..|+.-+..+. .++|..++.|++|++.. ++++
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk  160 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK  160 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence            4678888899999999999999999998765  333334445555666554444444 58999999999999994 7788


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+...|++..+.++-++.+..++..+..+|.|+.... +.|+.++..|.++.|+.++ ++.+..++.+++.++++++-.
T Consensus       161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd  238 (550)
T KOG4224|consen  161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD  238 (550)
T ss_pred             hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence            88999999999999888899999999999999997554 4789999999999999999 899999999999999999988


Q ss_pred             CCCCChhhhh--chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636          233 KPQPPFDQVS--PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       233 ~~~~~~~~~~--~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~  310 (530)
                      ..........  .++|.|+.++.++++.++-.+..+|.+++.... .+..++++|.+|.++++|+++........+.|+.
T Consensus       239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr  317 (550)
T KOG4224|consen  239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIR  317 (550)
T ss_pred             HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence            6555554444  499999999999999999999999999987654 4566889999999999999998888899999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      |++...-. ...+++.|++.+|+.+|..+.+.+++-.|..+|.|++..+......+.+.|.+|.+++++.++...+|.+.
T Consensus       318 nisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei  396 (550)
T KOG4224|consen  318 NISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI  396 (550)
T ss_pred             hcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence            99875432 23567999999999999998667799999999999999888889999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636          391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~  445 (530)
                      ..++..++..  .....+|.+.|+++.|+.++.+.+.+++.++..+|.++...-+
T Consensus       397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence            9999999985  3677889999999999999999999999999999999986543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.4e-29  Score=223.88  Aligned_cols=363  Identities=19%  Similarity=0.243  Sum_probs=317.5

Q ss_pred             hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      .+..+..++..+..+..++|..++.++.+++..  ......+..+|.+..+.++-++.+ ..+|..+..+|.|++. +.+
T Consensus       124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E  199 (550)
T KOG4224|consen  124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE  199 (550)
T ss_pred             eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence            456788888888888889999999999999877  466667888999999999877777 8999999999999999 789


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      +++.++..|++|.|+.++++.+..++..|..+|+||+.+.. .|+.+.+.+  .++.|+.++ ++++..++..|..+|.+
T Consensus       200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn  277 (550)
T KOG4224|consen  200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN  277 (550)
T ss_pred             hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998775 688888888  899999999 88899999999999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-chhHHHHHH
Q 009636          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALR  307 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~~~~al~  307 (530)
                      |+............|.+|.++++++++-.........|+.|++-++- +...+.+.|++..|+.+|..++ ..++..|..
T Consensus       278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvs  356 (550)
T KOG4224|consen  278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS  356 (550)
T ss_pred             hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence            99988777777889999999999998877777777889999986654 2345788999999999999865 559999999


Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      +|.|++..+......+.+.|.++.+..++.++ .-.++.+...+++.++.. ......+.+.|+++.|+.+..+.+.+++
T Consensus       357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~  434 (550)
T KOG4224|consen  357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR  434 (550)
T ss_pred             HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence            99999998888888899999999999999998 888999998899888764 3556778999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHc------CChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          388 KEAAWAISNATSGGTHEQIKFLVIQ------GCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~~~------~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      -.|+.+|.|++..  .++...+++.      |+-..|.+++.+.+..+...+.|.+..++...
T Consensus       435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            9999999999984  4554554432      45567899999999999999999999888665

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=1.4e-24  Score=220.97  Aligned_cols=389  Identities=20%  Similarity=0.186  Sum_probs=318.6

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +++-.+++..+ .....++..|.+++..  ......|.+.|+++.|+++|++++ .++...++++|.+++. ..+++..+
T Consensus       253 kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM  327 (708)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            44444555433 3444677888888755  466678889999999999999887 8999999999999999 68899999


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009636          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (530)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~  235 (530)
                      .+.|+++.|.+++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.++ .+  +..+..++.+|+++|.....
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL-~d--~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELL-KD--PNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHh-CC--CchHHHHHHHHHHhccCHhh
Confidence            999999999999999999999999999999987776 799999999999999999 33  34667799999999998876


Q ss_pred             CChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636          236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~  314 (530)
                      .......+++|.+++++.+ +++.+...+++.+.|++.... +.+.+++.++++.|+.........+   .+.++.|++.
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~  479 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQ  479 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHh
Confidence            6666777899999987654 567777778889999987764 5577888888999998865544322   4468889988


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHH
Q 009636          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAW  392 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~  392 (530)
                      +++.....+.  +.+..|+..+..+.+.+...++..+|+|+...+.+..+.+-+.+++|.|...|..+  ++++..+++.
T Consensus       480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            7644333332  47778888888776789999999999999876655555566789999999999766  5689999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhccCC--CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009636          393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK  470 (530)
Q Consensus       393 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  470 (530)
                      .++.++.  +++....+.+.|+++.|+.+|..  +|.+++..++.+++.++...+.           ...++.+.++...
T Consensus       558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-----------r~~ll~~~~~~~y  624 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-----------REVLLKETEIPAY  624 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-----------HHHHHhccchHHH
Confidence            9999997  66788888899999999999974  5788999999999999988765           2556678899999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH
Q 009636          471 IESLQTHDNAEIYEKSVKLLET  492 (530)
Q Consensus       471 l~~l~~~~~~~v~~~a~~il~~  492 (530)
                      +..|+++.|++|++.|...++-
T Consensus       625 lidL~~d~N~~ir~~~d~~Ldi  646 (708)
T PF05804_consen  625 LIDLMHDKNAEIRKVCDNALDI  646 (708)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHH
Confidence            9999999999999888777763

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=1.4e-23  Score=213.68  Aligned_cols=362  Identities=19%  Similarity=0.212  Sum_probs=304.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.|++.|.+++.+....++..|.++...  ..+...|.+.|+++.|++++.+++ ..++..++++|.|++. +++.+
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence            6899999999999999999999999999655  567889999999999999999988 8999999999999999 78899


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+++.|++|.|+.+|.++  ..+..|+.+|.+++.+.. .|..+...++++.+++++...++..+...+++.+.|++.+
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999754  466779999999998765 7889999999999999987777777888899999999999


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhH
Q 009636          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGN  311 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~n  311 (530)
                      ..+.......++++.|++........+   .+..+.|++.++......+.  +++..|+.++..+ +++....++.+|+|
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaN  517 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILAN  517 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence            876666666678888877654433222   34588899888754333332  5778888888764 67899999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKK  388 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~  388 (530)
                      +...+......+-+.+++|.|..+|..+. .+++.-+++..++.++. ++.....+.+.|+++.|+.++...  |.++..
T Consensus       518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl  596 (708)
T PF05804_consen  518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVL  596 (708)
T ss_pred             cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence            99876666666667899999999998653 45789999999998875 467778888999999999999765  789999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhh
Q 009636          389 EAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN  449 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~  449 (530)
                      ..++++..+..+.  +.+..++ +.+++..|++++.+.++.++..|-.+|.-+..+.+.+..
T Consensus       597 Qil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~  656 (708)
T PF05804_consen  597 QILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAE  656 (708)
T ss_pred             HHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            9999999999964  5666766 468899999999999999999999999999988877653

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.5e-20  Score=183.30  Aligned_cols=389  Identities=20%  Similarity=0.294  Sum_probs=314.4

Q ss_pred             CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .+++|+..|+.. |+..|++|+..++.+++....+....+--..++|.|+.+|+...+.+++..|+++|++++.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            568888888875 9999999999999999876555555444456899999999998889999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+++.++||.|+.-|.. ...++.++++.+|-.|+...+.   .+++.|++...+..+ +.....+++.|+.+..|.|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999987765 7789999999999999988763   678999999999999 77789999999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCC----CchhHHH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIP  304 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~----~~~~~~~  304 (530)
                      .-+...+..+...+|.|..+|...|....+.++.++.+++++   .++..+.+...|++....+++.-.    +..+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            988888888999999999999999999999999999999854   556778889999999999998764    3345667


Q ss_pred             HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc-------------hh-HHHHHH---------------------
Q 009636          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK-------------KS-IKKEAC---------------------  349 (530)
Q Consensus       305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-------------~~-v~~~a~---------------------  349 (530)
                      .++++..++.+++-....++..++...|..+|.....             |. +-...+                     
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            7888999999888777777788888888777754100             00 000000                     


Q ss_pred             ------------------------------HHHHHH-------------h---------cCCHHHHHHHHHhCcHHHHHH
Q 009636          350 ------------------------------WTVSNI-------------T---------AGNREQIQAVIEANIIGPLVA  377 (530)
Q Consensus       350 ------------------------------~~L~nl-------------~---------~~~~~~~~~l~~~~~i~~L~~  377 (530)
                                                    .++..+             -         ...++..+.++. .++|.|++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve  562 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE  562 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence                                          111100             0         001122222222 47899999


Q ss_pred             HHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCc
Q 009636          378 LLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDV  455 (530)
Q Consensus       378 ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~  455 (530)
                      ++.+. ++.||..++.||..+++..+.+.+..++.. .+-..+..+|.++|..++.-+|.....|++..+..        
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~--------  634 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT--------  634 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH--------
Confidence            88776 899999999999999999999998888755 55667888999999999999999999999876542        


Q ss_pred             hhhHHHhhhhccHHHHHHHhcC
Q 009636          456 NVFTQMIDDAEGLEKIESLQTH  477 (530)
Q Consensus       456 ~~~~~~l~~~~~~~~l~~l~~~  477 (530)
                        |...|...|.+..+..|...
T Consensus       635 --F~~~F~REGV~~~v~~L~~~  654 (1051)
T KOG0168|consen  635 --FSPSFRREGVFHAVKQLSVD  654 (1051)
T ss_pred             --hhhhHhhhhHHHHHHHHhcc
Confidence              77889999999999999763

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.82  E-value=6e-18  Score=168.59  Aligned_cols=366  Identities=20%  Similarity=0.230  Sum_probs=284.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hh
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR  194 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~  194 (530)
                      -+|..+.+|.+.+ +.+|..|+.-+-.+|.++.+.+..+.+.|+|+.|+.++.+.+.+++.+|+|+|.||..+...  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4788899999888 99999999999999999999999999999999999999999999999999999999976654  66


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC--------------CChhHH
Q 009636          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--------------NDDEVL  260 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v~  260 (530)
                      -.+.+.++++.++.++....|.++++.++.+|+||+..+ ..........++.|..-+-.              .+.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            678899999999999977789999999999999999984 44445556666666554321              136788


Q ss_pred             HHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCC------CCchhHHHHHHHHhHhhcCCc----------------
Q 009636          261 TDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDD----------------  317 (530)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~~~~----------------  317 (530)
                      .++..||.|++....+..+.+.+ .|+++.|+..+++      .+.+..++++.++.|++..-.                
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            89999999999866665555554 5889999888763      356677888888888864211                


Q ss_pred             ---------------hhhHH----------------------HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009636          318 ---------------MQTQC----------------------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (530)
Q Consensus       318 ---------------~~~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (530)
                                     .....                      +....++..-+.+|....++.+.+.++.+|-|++++..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                           00000                      11123455545556544477889999999999998532


Q ss_pred             ----HHHHHH-HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC------ChHH
Q 009636          361 ----EQIQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP------DPRI  429 (530)
Q Consensus       361 ----~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~------~~~~  429 (530)
                          .....+ .+..+++.|++++..++..|...++.+|.|++.+.  .. +.++-.++++.|++.|-..      +.++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence                223333 46789999999999999999999999999999953  33 4455688999999999643      3578


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCC
Q 009636          430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~il~~~~~~~~  498 (530)
                      +..++..|.+++.....           ...-+-+.+|+++|..|. ...++.+.+.|..++..+|...+
T Consensus       629 v~~vc~tl~niv~~~~~-----------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVL-----------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHhHHHHHHHhHH-----------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            88899999999865543           244455699999999884 45677999999999999887533

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.78  E-value=3.2e-15  Score=151.51  Aligned_cols=398  Identities=18%  Similarity=0.175  Sum_probs=301.8

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +.+...+...+.+....++..|.+++...  .....  ..+..+.|...|.+++ +.++..+++.|.+++..+......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            34777888888888888889999998753  22222  4567889999999988 9999999999999999777777888


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009636          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (530)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~  235 (530)
                      .+.++++.++..+.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            88999999999999999999999999999999877654 4566777788888888 555777888899999999887633


Q ss_pred             -CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch-----hH-HHHHHH
Q 009636          236 -PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-----VL-IPALRT  308 (530)
Q Consensus       236 -~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-----~~-~~al~~  308 (530)
                       .......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+.+.+     +. ...+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence             3344457899999999999999999999999999998 455578899999999999999764322     22 233477


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHh-C----cHHHHHHHHhcC
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV-IEA-N----IIGPLVALLENA  382 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~i~~L~~ll~~~  382 (530)
                      .++++...+....... ..++..+..++.+. ++..+..|.-+++.+++. .+....+ .+. +    ++..+.....++
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~  349 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG  349 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence            8888875443321111 34666777777787 999999999999999864 4555555 332 2    344445555666


Q ss_pred             chhHHHHHHHHHHHhhcCCCH---HH----HHHHH---HcCChH-HHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcC
Q 009636          383 EFDIKKEAAWAISNATSGGTH---EQ----IKFLV---IQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG  451 (530)
Q Consensus       383 ~~~v~~~a~~aL~nl~~~~~~---~~----~~~l~---~~~~i~-~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~  451 (530)
                      ..++|..++.+|.++...+..   +.    .+...   ..+... .+..+++.+=++++..++..|..++...-.     
T Consensus       350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg-----  424 (503)
T PF10508_consen  350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG-----  424 (503)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence            789999999999999665432   11    11111   223455 788899899899999999999999877532     


Q ss_pred             CCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          452 NTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       452 ~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                            ...+....|.++.+.+=....+.+..+.=..++.++..
T Consensus       425 ------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~  462 (503)
T PF10508_consen  425 ------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK  462 (503)
T ss_pred             ------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence                  24556667777777665666788888888888888764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.77  E-value=1.7e-16  Score=158.32  Aligned_cols=364  Identities=20%  Similarity=0.225  Sum_probs=277.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--h
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--H  151 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~  151 (530)
                      .+|+.+.+|.+.++.+|-.|+..+..+.-.. +.....+.+.|.|+.|+.+|.+.. .+++.+|+++|.|++.++..  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            7899999999999999999999999775543 455556678999999999999998 99999999999999997765  8


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-------------CCchh
Q 009636          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------------QPKLS  217 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-------------~~~~~  217 (530)
                      .-.+.+.++|+.++++|+. .|.++++.+..+|+||++.+. ++..++. ..+..|...+..             -.+.+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence            8888899999999999987 789999999999999987743 5544443 356666554421             11467


Q ss_pred             HHHHHHHHhhhhccCCC-C-CChhhhhchHHHHHHhhc------CCChhHHHHHHHHHHHhccCChH-----HHHH----
Q 009636          218 MLRNATWTLSNFCRGKP-Q-PPFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTND-----KIQA----  280 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~-~-~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~l~~l~~~~~~-----~~~~----  280 (530)
                      +..+++.||.|++.... . ...-...|++..|+..++      ..|....++++..+.|++..-+.     ..+.    
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            89999999999998652 2 223445788888887776      23667778888888888743220     0000    


Q ss_pred             --------------------------------------------HHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcC
Q 009636          281 --------------------------------------------VIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       281 --------------------------------------------~~~~~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~~  315 (530)
                                                                  +....++..-..+|. +.++.+.+.++.+|-|++.+
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                                                        001112222222222 34567888999999999987


Q ss_pred             Cchh----hHHH-hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC------ch
Q 009636          316 DDMQ----TQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA------EF  384 (530)
Q Consensus       316 ~~~~----~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~  384 (530)
                      ....    ...+ ....+++.|+.+|..+ +..+.+.++.+|.|++.+-  ..+.++..+.++.|++.|...      +.
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~se  626 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSE  626 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence            6533    2333 4678999999999999 9999999999999998752  234566678999999999655      36


Q ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhhh
Q 009636          385 DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~~  445 (530)
                      ++...++.+|.|++.. +....+.+.+.+.++.|+.+..+. +++....+...|..|-.+.+
T Consensus       627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999975 678889999999999999888764 55888888888888776654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.77  E-value=2.3e-15  Score=152.54  Aligned_cols=401  Identities=19%  Similarity=0.188  Sum_probs=296.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      ..+++.|...  ...+.++..+..-+..  .+....    -..+.++.+|++.+ .+....++.+|..+.... ..... 
T Consensus         6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~~----~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l-   74 (503)
T PF10508_consen    6 NELLEELSSK--AERLEALPELKTELSS--SPFLER----LPEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL-   74 (503)
T ss_pred             HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHHh----chHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH-
Confidence            4455555543  3445566666554433  121221    22334788888776 677778888888888732 22222 


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009636          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (530)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~  235 (530)
                       ..+..+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++ .+++..+...|+.+|..++...+.
T Consensus        75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~  152 (503)
T PF10508_consen   75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG  152 (503)
T ss_pred             -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence             346778999999999999999999999999988887778888899999999999 889999999999999999987654


Q ss_pred             CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~  315 (530)
                      .......+.++.|..++..+++.++..++.++.+++..+++....+.+.|+++.++..+.+++.-++..++.++..++. 
T Consensus       153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-  231 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-  231 (503)
T ss_pred             HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence            4444456668889999988888999999999999999999999999999999999999999888999999999999999 


Q ss_pred             CchhhHHHhhcCchHHHHHhhcCCC-ch---h-HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636          316 DDMQTQCVIEYQALPCLLNLLSGNY-KK---S-IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       316 ~~~~~~~~~~~~~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      .+...+.+.+.|+++.|..++.+.. ++   . .--......++++...+..+.... ..++..|.+++.+.|+..+..|
T Consensus       232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A  310 (503)
T PF10508_consen  232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVA  310 (503)
T ss_pred             ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHH
Confidence            7777888999999999999997652 22   1 112233566777764444332222 2466677778888899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHH-HHcC-----ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhh
Q 009636          391 AWAISNATSGGTHEQIKFL-VIQG-----CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD  464 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l-~~~~-----~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~  464 (530)
                      ..+++.++.  +.+....| ...+     ++..+.........+++..++.++.+++...+....  ++-.+.....++.
T Consensus       311 ~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~--~~i~~~~~~w~~~  386 (503)
T PF10508_consen  311 FDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQD--NDILSITESWYES  386 (503)
T ss_pred             HHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHH
Confidence            999999987  55776666 3322     366666667778889999999999999876653111  0001111222222


Q ss_pred             hc--cHH-HHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          465 AE--GLE-KIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       465 ~~--~~~-~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .+  ... .+..+...|=+|++-.|..++...+.
T Consensus       387 ~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  387 LSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             hcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            22  233 56777888999999999999987654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.77  E-value=7.5e-17  Score=148.78  Aligned_cols=381  Identities=14%  Similarity=0.108  Sum_probs=272.5

Q ss_pred             CCChHHHHHHHHHHHHhhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009636           84 SNDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  161 (530)
                      ..+..+...+..++.+....+  ++.....-++.+++..|.+..++++ .++..++.++|+|+|.++.+.|..+.+.|+-
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            344556666777777765331  0111223356778888888888886 8999999999999999999999999999997


Q ss_pred             HHHHHhhCC----C---CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCC
Q 009636          162 PIFVKLLYS----P---SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       162 ~~L~~ll~~----~---~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      ..++.+|+.    +   +.+....+...|.|..-++.+.+..+++.|++++|...+. ...+....+.....+.|+..-.
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            777777754    2   3466777888999999999999999999999999988874 3445555565555555544332


Q ss_pred             CC--CChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCc-------hhH
Q 009636          234 PQ--PPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSP-------SVL  302 (530)
Q Consensus       234 ~~--~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-------~~~  302 (530)
                      ..  ..+.....+...+++++.+. .+++.+-+...+.+.++++.-. -.+.+.|.+..++.++.. ...       ...
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence            11  11222234445566666543 5666777777888888776543 336777999999998876 211       223


Q ss_pred             HHHHHHHhHhhcCCchhhHHHhhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009636          303 IPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (530)
Q Consensus       303 ~~al~~L~nl~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  381 (530)
                      ..++....-+..|++.. +.+...+ ++..+..++.+. +......+..+|+|+++.+ +.+-++++.+++..|++++..
T Consensus       291 k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555665543 4555444 899999999999 9999999999999998875 556678888999999998854


Q ss_pred             -----CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCch
Q 009636          382 -----AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVN  456 (530)
Q Consensus       382 -----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~  456 (530)
                           ++.+++..++.||.|+....  .....++..|+.+.++..++...|.++..-++.+..+....+..         
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~---------  436 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI---------  436 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence                 46789999999999999843  44567789999999999999999999998888888776555432         


Q ss_pred             hhHHHhhhhccHHHHHHHhcCCCHH
Q 009636          457 VFTQMIDDAEGLEKIESLQTHDNAE  481 (530)
Q Consensus       457 ~~~~~l~~~~~~~~l~~l~~~~~~~  481 (530)
                       .++....-..+++|.+...+++..
T Consensus       437 -a~eL~kn~~l~ekLv~Wsks~D~a  460 (604)
T KOG4500|consen  437 -ACELAKNPELFEKLVDWSKSPDFA  460 (604)
T ss_pred             -HHHHhcCHHHHHHHHHhhhCCccc
Confidence             233333334455666665555443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.74  E-value=7.8e-16  Score=160.03  Aligned_cols=366  Identities=20%  Similarity=0.209  Sum_probs=279.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCChhh
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~--~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      ....++.++...|++   .-.+.|..+.+.  ......+..+|.+|.|+++|.-++  +.+.+..|-.+|.||....++.
T Consensus       198 ts~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~  272 (2195)
T KOG2122|consen  198 TSNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDE  272 (2195)
T ss_pred             hhhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcch
Confidence            444666666666654   344555556444  456677889999999999997654  3678888999999999977665


Q ss_pred             HHHHHhCCChHHHHHh----------hCC------C-CHHHH-HHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--
Q 009636          152 TKVVIDHGAVPIFVKL----------LYS------P-SDDVR-EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--  211 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~l----------l~~------~-~~~i~-~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--  211 (530)
                      ...-.+.-++..|-++          +..      + ..+-+ ..|+.+|..++.+. +.|...-+.|++..+-+++.  
T Consensus       273 kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vD  351 (2195)
T KOG2122|consen  273 KRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVD  351 (2195)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHH
Confidence            5443333333333221          111      1 11222 25667777776554 58999999999999988773  


Q ss_pred             ---------CCCchhHHHHHHHHhhhhccCCCCCC--hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 009636          212 ---------GQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA  280 (530)
Q Consensus       212 ---------~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~  280 (530)
                               +.....+++++..+|.||..++...+  .--..|++..++..|.+..+++..-...+|.||+...+.+...
T Consensus       352 h~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKk  431 (2195)
T KOG2122|consen  352 HEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKK  431 (2195)
T ss_pred             HHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHH
Confidence                     11246789999999999999983322  2345899999999999988899999999999999776655554


Q ss_pred             H-HHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHHHHhhcCCC---chhHHHHHHHHHHH
Q 009636          281 V-IEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNY---KKSIKKEACWTVSN  354 (530)
Q Consensus       281 ~-~~~~~l~~L~~l-L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~n  354 (530)
                      + -+.|-+..|+.. +...+.......+.+|+||+.++.+....+- -.|.+..|+.+|....   .-.+.+.|..+|.|
T Consensus       432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN  511 (2195)
T KOG2122|consen  432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN  511 (2195)
T ss_pred             HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence            4 456777777765 5556667888999999999988877665554 4599999999998752   34677888888888


Q ss_pred             Hhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009636          355 ITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT  431 (530)
Q Consensus       355 l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~  431 (530)
                      +..   .+..+++.+.+++++..|+..|++.+..+..++|.+|+||+.. +++..++|++.|++..|..++.+++..+..
T Consensus       512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~  590 (2195)
T KOG2122|consen  512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAM  590 (2195)
T ss_pred             HHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence            775   5778889999999999999999999999999999999999987 678889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 009636          432 VCLEGLENILKVGEA  446 (530)
Q Consensus       432 ~al~~l~~ll~~~~~  446 (530)
                      -+..+|.|++..-+.
T Consensus       591 GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  591 GSAAALRNLLNFRPA  605 (2195)
T ss_pred             hHHHHHHHHhcCCch
Confidence            999999999977643

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=1.7e-14  Score=129.38  Aligned_cols=317  Identities=16%  Similarity=0.166  Sum_probs=249.9

Q ss_pred             cCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCC
Q 009636          115 SGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD  189 (530)
Q Consensus       115 ~g~v~~Lv~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~  189 (530)
                      .|..+.++..+   .+++ ..+...++.+|..+..+.++    +++..+...++.+|..  .+.++....+..+..-|..
T Consensus       103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~  177 (461)
T KOG4199|consen  103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM  177 (461)
T ss_pred             CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            45555554433   3444 78888999999999886665    4556778888888854  6678888888888888888


Q ss_pred             CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh----------hhhhchHHHHHHhhcCC-Chh
Q 009636          190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF----------DQVSPALPALAHLIHSN-DDE  258 (530)
Q Consensus       190 ~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~----------~~~~~~l~~L~~ll~~~-d~~  258 (530)
                      .+..|+.+++.++++.+...+.......+.+.++|++..|...+.....          ....+++..|+..+... |+.
T Consensus       178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~  257 (461)
T KOG4199|consen  178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD  257 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence            8889999999999999988886555567999999999999887633211          12245677788888754 799


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc-h---hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009636          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-S---VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~---~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (530)
                      +....+.+|..++-.++ ..+.+.+.|+++.|+.++.+.+. .   ....++..|..++ |++.....+++.|+++.++.
T Consensus       258 ~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~  335 (461)
T KOG4199|consen  258 SLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT  335 (461)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence            99999999999987654 45678899999999999988443 2   4456778888877 47777788999999999998


Q ss_pred             hhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009636          335 LLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVI  411 (530)
Q Consensus       335 lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  411 (530)
                      ++. +..+|.|..+++.+++-+|-..|++...+++.|+-...++.|+..  ...++++|+|++.|++.. +.+++..++.
T Consensus       336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l~  414 (461)
T KOG4199|consen  336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILLA  414 (461)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHHh
Confidence            874 333889999999999999999999999999999999999988765  467999999999999987 4567777666


Q ss_pred             cCChHHHHhccCCCChHHHHHHHHHHHHH
Q 009636          412 QGCIKPLCDLLVCPDPRIVTVCLEGLENI  440 (530)
Q Consensus       412 ~~~i~~L~~lL~~~~~~~~~~al~~l~~l  440 (530)
                      .| ++.|+..-...++.....+-.+|.-+
T Consensus       415 ~G-iE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  415 NG-IEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             cc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            55 77787877778887777666666654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=3.4e-14  Score=147.05  Aligned_cols=361  Identities=17%  Similarity=0.146  Sum_probs=256.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh---h
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS---E  150 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~---~  150 (530)
                      .++-+.+..+|+++..|..|+..|..+...-++.....+  ..+.+.|.+.+.+++.+ ++..|+++++.++...+   .
T Consensus       119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~  195 (1075)
T KOG2171|consen  119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKS  195 (1075)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchH
Confidence            344445556689999999999999988765322222111  23577788888888845 99999999999887553   3


Q ss_pred             hHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHH
Q 009636          151 HTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWT  225 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~  225 (530)
                      ..+.+.  ..+|.++..+..    .+......++.+|..++...|.+-...+.. ++...+.+.. ++-+..++..|+.+
T Consensus       196 ~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~  272 (1075)
T KOG2171|consen  196 EVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEF  272 (1075)
T ss_pred             HHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHH
Confidence            333332  456777766643    566677889999999987776543333221 4555555553 34488999999999


Q ss_pred             hhhhccCCCCCC---hhhhhchHHHHHHhhcCC--C--------------hhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009636          226 LSNFCRGKPQPP---FDQVSPALPALAHLIHSN--D--------------DEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (530)
Q Consensus       226 L~~L~~~~~~~~---~~~~~~~l~~L~~ll~~~--d--------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (530)
                      +..+++..|...   ......+++.++.++...  |              ...-..+..++-.++.+-...   .+-.-+
T Consensus       273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~  349 (1075)
T KOG2171|consen  273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPL  349 (1075)
T ss_pred             HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHH
Confidence            999998843221   224466677777766421  1              012233455555555432211   111235


Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009636          287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV  366 (530)
Q Consensus       287 l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (530)
                      ++.+-.++.+.+|.-|..++.+|+.++.|+.......+ ..+++..+..|.++ ++.||..||.+++.++..-...++.-
T Consensus       350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~  427 (1075)
T KOG2171|consen  350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKK  427 (1075)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence            67777889999999999999999999999987765533 47889999999999 99999999999999999777777777


Q ss_pred             HHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          367 IEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       367 ~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~-~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ...-+++.|+..+.+. +++|+..|+.++.|++..+..+.+...++ +++. .|..++.++.+.+++.++.+|..+....
T Consensus       428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA  506 (1075)
T KOG2171|consen  428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA  506 (1075)
T ss_pred             HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            7778899999998876 68999999999999999877665544332 4455 5555667888899999999999998766


Q ss_pred             hh
Q 009636          445 EA  446 (530)
Q Consensus       445 ~~  446 (530)
                      +.
T Consensus       507 ~~  508 (1075)
T KOG2171|consen  507 QE  508 (1075)
T ss_pred             hh
Confidence            44

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.8e-14  Score=133.76  Aligned_cols=379  Identities=18%  Similarity=0.127  Sum_probs=278.2

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009636           86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV  165 (530)
Q Consensus        86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  165 (530)
                      .......|+..|.+++..  ...-..|....+|..||+.|+.++ .++.......|..++- ..+++..+.+.|++..|+
T Consensus       276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~  351 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL  351 (791)
T ss_pred             HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence            344555677777888754  344557888899999999999988 7888889999999988 678888899999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchH
Q 009636          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL  245 (530)
Q Consensus       166 ~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l  245 (530)
                      +++...+++++...+..+.|++.++. .|...+..|.+|.+..++.++..   ...|+..++.++.++..........++
T Consensus       352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci  427 (791)
T KOG1222|consen  352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCI  427 (791)
T ss_pred             HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHH
Confidence            99999999999999999999998876 78888899999999999943332   334667788888887666666778899


Q ss_pred             HHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh
Q 009636          246 PALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI  324 (530)
Q Consensus       246 ~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~  324 (530)
                      +.+.+.+-+ .+.++-...+..-.|++-+. .+.+.+++...+..|++.--......   ....+.|++.+.......++
T Consensus       428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSqHeg~tqn~Fi  503 (791)
T KOG1222|consen  428 KLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQHEGATQNMFI  503 (791)
T ss_pred             HHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchH---HHHHHHHhhhccchHHHHHH
Confidence            988876554 35555444433334555433 23455666666777776533322222   23456677765553433444


Q ss_pred             hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCC
Q 009636          325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       325 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~  402 (530)
                      +  .+..|...++...+...-.++..+++|++..+-+-...+-+.+++|.+-..|..+  ..++......+++.++.  +
T Consensus       504 d--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d  579 (791)
T KOG1222|consen  504 D--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--D  579 (791)
T ss_pred             H--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--h
Confidence            3  3556666666654677888999999999886656666666788999999988766  46788888889998888  4


Q ss_pred             HHHHHHHHHcCChHHHHhccCC--CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009636          403 HEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA  480 (530)
Q Consensus       403 ~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~  480 (530)
                      ......+...++++.|+.+|+.  .|.+++...+-.+..++.....           -.-++.+...-..+..|++..|.
T Consensus       580 ~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-----------r~~miket~~~AylIDLMHDkN~  648 (791)
T KOG1222|consen  580 LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-----------RRLMIKETALGAYLIDLMHDKNA  648 (791)
T ss_pred             hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-----------HHHHHhhccchHHHHHHHhcccH
Confidence            4556666688999999999974  5667777777777777766322           25566777777789999999999


Q ss_pred             HHHHHHHHHHH
Q 009636          481 EIYEKSVKLLE  491 (530)
Q Consensus       481 ~v~~~a~~il~  491 (530)
                      +|++.+...++
T Consensus       649 eiRkVCDn~Ld  659 (791)
T KOG1222|consen  649 EIRKVCDNALD  659 (791)
T ss_pred             HHHHHHHHHHH
Confidence            99877665554

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=4.9e-13  Score=125.52  Aligned_cols=361  Identities=15%  Similarity=0.148  Sum_probs=277.3

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.+.-+++.|..++.+........|.++.-.  .++...|.+.|++..|++++...+ ++++...+..+.|++. +...+
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr  379 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR  379 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence            4678888899988888887777778777444  567778889999999999999998 9999999999999999 67788


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..++..|.+|.+..++.+..  -...|+..+..++.+.. .+..+....+++.+++.+....+..+-...+....|||.+
T Consensus       380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            89999999999999997643  23457777888876665 7888888999999998886777788877778788899998


Q ss_pred             CCCCChhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009636          233 KPQPPFDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG  310 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~l-l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~  310 (530)
                      ..+.........+..|... +...|.-+    ...+.+++.+.......+++  .+..|...++.. +......++.+++
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA  530 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence            8777776666677776654 44444432    34567777665544444443  456666666654 4567888999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009636          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK  387 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~  387 (530)
                      |+.-..-.....+-..+++|++-..|..+- ..++.-...-.++.++.. ......+..+++++.|+++|+..  |.+..
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV  609 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV  609 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence            998877677766778899999999998653 345666666677777554 35555666789999999999765  67888


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhh
Q 009636          388 KEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN  449 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~  449 (530)
                      ...++++..+..+  ...++.++.. ..-..|++++...+..++..+-.+|..+......+..
T Consensus       610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK  670 (791)
T KOG1222|consen  610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK  670 (791)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence            8889999999886  3455666644 5566799999999999999999999988887776654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.66  E-value=1.3e-13  Score=127.77  Aligned_cols=402  Identities=12%  Similarity=0.078  Sum_probs=294.5

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC---C---CHHHHHHHHHHHHHHhc
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE---D---YPQLQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~---~---~~~i~~~a~~~L~~l~~  146 (530)
                      +.++.+.+...|++.++-.+..++|.+++..+ ++.+..+.+.|+-..+++.|+..   +   +.+.-.-+...|.|...
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            46677788888888999999999999998765 78888888999877788777642   2   23555666778999999


Q ss_pred             CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009636          147 GTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (530)
Q Consensus       147 ~~~~~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~  223 (530)
                      ++.+.+..+.+.|+++.|...+.-  .+.+..+.++....|+.+- ++...+...+.....-+++++....++++.+.+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999999888754  5677778787777777642 2223445566777788888887777888999999


Q ss_pred             HHhhhhccCCCCCChhhhhchHHHHHHhhcC-CC----h---hHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhh
Q 009636          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND----D---EVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL  294 (530)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d----~---~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL  294 (530)
                      ..+...+.++.-.-.....|.+..+..+++. .+    .   .....++....-+..+++. .+.+...+ +++.+.+.+
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence            9999999887555556667888888888875 21    1   1222334444444455544 45555555 899999999


Q ss_pred             CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009636          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQAVIEAN  370 (530)
Q Consensus       295 ~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (530)
                      .+++......+..++||+++.++. .-.+++.+++..|+.++....    +-+++..++.+|.|++-.- .....++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccc
Confidence            999999999999999999995554 457889999999999996521    4567888999999998742 3455678899


Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChH-HHHHHHHHHHHHHHhhhhhh
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPR-IVTVCLEGLENILKVGEAEK  448 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~-~~~~al~~l~~ll~~~~~~~  448 (530)
                      +.+.++..++...|.+...-+.++.-+..+. +.....+.. ...++.|++.-+++|.. +.-.....+.-+++......
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd  481 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD  481 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence            9999999999999999988888887776642 112223332 24577788877777765 55555666666665542211


Q ss_pred             hcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHH
Q 009636          449 NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK  488 (530)
Q Consensus       449 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~  488 (530)
                               +...+...||++....+....+-.++..|.-
T Consensus       482 ---------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalV  512 (604)
T KOG4500|consen  482 ---------VILTVPKSGGIKEKVSMFTKNHINMQNEALV  512 (604)
T ss_pred             ---------hHhhccccccHHHHHHHHHHhhHHHhHHHHH
Confidence                     3555677888888888877777777666543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=1.7e-13  Score=123.08  Aligned_cols=310  Identities=12%  Similarity=0.129  Sum_probs=247.3

Q ss_pred             cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009636           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (530)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  161 (530)
                      .+++..+.++++.+|..+....  |   .+.+...+..++.+|.... +.++....+.++..-|..+..+++.+++.+++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            3566677777888877765442  2   2345567888888886432 46888888899999998899999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHhhhCCCc---------hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          162 PIFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       162 ~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~---------~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +.+.+.|.. ....+.....|++.-+..+++         .....+...|++..|+..+....++.+...++.+|..|+-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999987765 334577778999999987654         2345677788899999999777789999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCC-Chh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPA  305 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~a  305 (530)
                      .+.........|.+..|+.++.+. +..   ....++..|..++.. ++....+++.|+.+.++.++..  ++|.+...+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            776666677789999999999874 333   445677777777754 4566778999999999998743  678899999


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      +.+++-++-..++....+++.|+-...+..|+.. ....++++|||.+.|++..+.++...++.. .++.|+......++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence            9999999999999999999999999999988754 356899999999999999888888777764 57778888888888


Q ss_pred             hHHHHHHHHHHHhhc
Q 009636          385 DIKKEAAWAISNATS  399 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~  399 (530)
                      .....|..+|..+-.
T Consensus       430 tce~~akaALRDLGc  444 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGC  444 (461)
T ss_pred             cHHHHHHHHHHhcCc
Confidence            888888888888865

>PRK09687 putative lyase; Provisional

Probab=99.63  E-value=6e-14  Score=130.54  Aligned_cols=255  Identities=14%  Similarity=0.133  Sum_probs=200.9

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      -++.|..+|.+.+ ..++..|+++|..+..           ..+++.+..++.++++.+|..++|+|+.|-.... .   
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~---   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C---   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence            4778999999888 8999999999988764           2345778888889999999999999999853221 1   


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                        ....++.|..++..+++..++..++.+|.+++......    ...+++.+...+.++++.|+..++++|+.+..  + 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence              11256677777558889999999999999997654222    23356667777888899999999999987642  1 


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       277 ~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                              ..++.|+.+|.++++.++..|+.+||.+...++         .+++.|+..|.+. +..||..|+++|+.+-
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    356889999999999999999999999943232         3567899999988 9999999999999873


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHH
Q 009636          357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLE  435 (530)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~  435 (530)
                      .  +         .+++.|++.+.+++  ++..++.+|+++-..            ..++.|..+++ .+|+.++..+.+
T Consensus       221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~  275 (280)
T PRK09687        221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK------------TLLPVLDTLLYKFDDNEIITKAID  275 (280)
T ss_pred             C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHHH
Confidence            2  2         37899999998765  778899999988652            25888888886 789999999988


Q ss_pred             HHHH
Q 009636          436 GLEN  439 (530)
Q Consensus       436 ~l~~  439 (530)
                      ++..
T Consensus       276 a~~~  279 (280)
T PRK09687        276 KLKR  279 (280)
T ss_pred             HHhc
Confidence            8753

>PRK09687 putative lyase; Provisional

Probab=99.62  E-value=1.6e-13  Score=127.72  Aligned_cols=254  Identities=15%  Similarity=0.099  Sum_probs=198.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.|+..|.+++..++..|+..|..+-.            ..+++.+..++.+++ +.+|..|+++|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            56888999999999999999999987632            235777888888888 99999999999998752211   


Q ss_pred             HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       154 ~~~~~g~i~~L~~l-l~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                         ...+++.|..+ +.++++.++..++.+|++++......     ...++..+...+ .+.+..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11346777776 56788999999999999996443211     111344555666 67789999999999976532 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                               ...++.|+.++.++++.|+..++.+|+.+....+         .+++.|+..|.+.++.++..|++.|+.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3478999999999999999999999999843333         3457788899999999999999999986


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchhHHHHHH
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA  391 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~  391 (530)
                      -.           ..+++.|+..|.++ +  ++..++.+|+++..  +         ..+|.|..++. .+|..++..|.
T Consensus       220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence            43           24689999999976 4  78889999999843  2         36889999996 67999999999


Q ss_pred             HHHHH
Q 009636          392 WAISN  396 (530)
Q Consensus       392 ~aL~n  396 (530)
                      ++|..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            98853

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.61  E-value=1.2e-12  Score=127.82  Aligned_cols=405  Identities=16%  Similarity=0.085  Sum_probs=274.0

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      .++..+.+.+|+....|..-..+++.+. .++...+++.|.++.++.+++..+ .++.+.+.+.++.....+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            4455666778888888999999998876 555557899999999999998765 46777778888888888888889999


Q ss_pred             HhCCChHHHHHhhCCCC-HHHHHHHHHHHHhhhCCCchhhhhHh---hcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          156 IDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVL---SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       156 ~~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~i~---~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      .+.+.++.|++++++++ ..+++.++.++.++...++. .+...   ...+++.+..++ ..........-+...+++|.
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~-q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~  169 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY-QDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS  169 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc-cccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence            99999999999999988 78999999999999876652 22222   122344444444 32445555566666667776


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH---HhccCChHHH----HHHHHhCcHH--HHHHhhCCCCchhH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTNDKI----QAVIEAGVFP--RLAEFLMHPSPSVL  302 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~---~l~~~~~~~~----~~~~~~~~l~--~L~~lL~~~~~~~~  302 (530)
                      ...........++...+.-++.......+..++.+++   .+..+++...    ....+.|+.+  .+..++++++...+
T Consensus       170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~  249 (678)
T KOG1293|consen  170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER  249 (678)
T ss_pred             cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence            6555555566777777777777777888899999998   6665554332    2334446655  34555566555555


Q ss_pred             HHHHHHHhHhhcCCc-------------hhhHHH--------------------------------------hhcCchHH
Q 009636          303 IPALRTVGNIVTGDD-------------MQTQCV--------------------------------------IEYQALPC  331 (530)
Q Consensus       303 ~~al~~L~nl~~~~~-------------~~~~~~--------------------------------------~~~~~l~~  331 (530)
                      ..++.++-++..++.             .....+                                      .+...++.
T Consensus       250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~  329 (678)
T KOG1293|consen  250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT  329 (678)
T ss_pred             HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence            555555555544330             000000                                      00001111


Q ss_pred             HHHhh----------------------------------------------------cCCCchhHHHHHHHHHHHHhcCC
Q 009636          332 LLNLL----------------------------------------------------SGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       332 L~~lL----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                      +.+++                                                    ... +..++..||.++-+++..-
T Consensus       330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV  408 (678)
T KOG1293|consen  330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSV  408 (678)
T ss_pred             HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHH
Confidence            11111                                                    011 3334444444444443321


Q ss_pred             HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009636          360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN  439 (530)
Q Consensus       360 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~  439 (530)
                      ..-...+-...++.+|++++..++..|+..++.+|+|+...-+ .....++..|+++.+..++...++.++..++|+|++
T Consensus       409 ~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~  487 (678)
T KOG1293|consen  409 SALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRH  487 (678)
T ss_pred             HHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            1111112245688999999999999999999999999998644 456778999999999999999999999999999999


Q ss_pred             HHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636          440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       440 ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                      ++-.+....          ...+-.-=+...|..+.++++..|++.+.+++.++..+
T Consensus       488 l~f~~de~~----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  488 LMFNCDEEE----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHhcchHHH----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            986554322          12222122356788899999999999999999988654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.7e-13  Score=133.30  Aligned_cols=340  Identities=17%  Similarity=0.182  Sum_probs=220.6

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHH-HH---HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-VI---RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~---~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~  148 (530)
                      +.+|.|.++|.+++...+.-|..+|.++...+ ....+. +.   -.-.+|.++++.++++ |.+|..|+.|+..+.-..
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence            46788889999999888888999999887442 111110 00   0236899999999998 999999999998877644


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      ++....-++ .++..+..+-.+.++++|.+.+.+|..|....+.- -.---.++++.++... ++.|+++.-.||.++..
T Consensus       206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~t-qd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA  282 (885)
T ss_pred             cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence            433322222 35666777777789999999999999998655421 0101124566666666 77788899999999999


Q ss_pred             hccCCCCCC--hhhhhchHHHHHHhhcCCChhH--HH-------------------------------------------
Q 009636          229 FCRGKPQPP--FDQVSPALPALAHLIHSNDDEV--LT-------------------------------------------  261 (530)
Q Consensus       229 L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v--~~-------------------------------------------  261 (530)
                      ++...-...  ......++|.|+.-+.-++.++  ..                                           
T Consensus       283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            998862211  2334667777765433111100  00                                           


Q ss_pred             ---HHHHHHHHhccCChHHHHHHHHhCcH----HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009636          262 ---DACWALSYLSDGTNDKIQAVIEAGVF----PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (530)
Q Consensus       262 ---~a~~~l~~l~~~~~~~~~~~~~~~~l----~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (530)
                         ..-|-|...+...-+....+....++    |.|-+.|.+++|.+++.++.++|.++.|+-...-.- -..++|.|+.
T Consensus       363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeLip~l~~  441 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPELIPFLLS  441 (885)
T ss_pred             ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHHHHHHHH
Confidence               00122222221111112223333444    445555677899999999999999998875432111 1247899999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009636          335 LLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      +|.+. .+-||.-+||+|+..+..  ..+ .+..+. .++..|++.+-+++.+||+.|+.++..+-..+..+.+.++-  
T Consensus       442 ~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~--  516 (885)
T KOG2023|consen  442 LLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLE--  516 (885)
T ss_pred             HhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHH--
Confidence            99998 999999999999999762  111 212221 35666666677788999999999999998877766666542  


Q ss_pred             CChHHHHhccC
Q 009636          413 GCIKPLCDLLV  423 (530)
Q Consensus       413 ~~i~~L~~lL~  423 (530)
                      .++..|+..+.
T Consensus       517 ~IL~~l~~af~  527 (885)
T KOG2023|consen  517 YILDQLVFAFG  527 (885)
T ss_pred             HHHHHHHHHHH
Confidence            23444444443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.60  E-value=3.5e-13  Score=122.39  Aligned_cols=237  Identities=19%  Similarity=0.224  Sum_probs=185.8

Q ss_pred             hhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636          241 VSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       241 ~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                      ..+-++.|+.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|++++.|++...+.+
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            35667889999985 58999999999999987655 45677888999999999999999999999999999998765544


Q ss_pred             hHHHhhcCchHHHHHhh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636          320 TQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                      .  .++. .++.+.+.. ..+.+..++..+..+|.|++..+..  +.++ .+.++.++.++..++..+|..++++|.|++
T Consensus        89 ~--~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   89 E--QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             H--HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3  2333 355555543 4333678999999999999865322  2333 347999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhhhhhhhc---CCCCchhhHHHhhhhc-cHHHHHH
Q 009636          399 SGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNL---GNTDVNVFTQMIDDAE-GLEKIES  473 (530)
Q Consensus       399 ~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~~~~~~~---~~~~~~~~~~~l~~~~-~~~~l~~  473 (530)
                      .  ++...+.++..+++..++.+++.. +.++...++..+.++.....+....   ..-...++...|.+.+ ..++|..
T Consensus       163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            9  678899999999999999999875 5678888999999996544332111   1113445567787777 7788999


Q ss_pred             HhcCCCHHHHHHH
Q 009636          474 LQTHDNAEIYEKS  486 (530)
Q Consensus       474 l~~~~~~~v~~~a  486 (530)
                      |..|++++|+.+.
T Consensus       241 l~~h~d~ev~~~v  253 (254)
T PF04826_consen  241 LANHPDPEVKEQV  253 (254)
T ss_pred             HHcCCCHHHhhhc
Confidence            9999999999864

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.60  E-value=7.2e-14  Score=145.76  Aligned_cols=268  Identities=19%  Similarity=0.153  Sum_probs=222.5

Q ss_pred             HHH-HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-----------CHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009636           89 VQY-ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVI  156 (530)
Q Consensus        89 ~~~-~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-----------~~~i~~~a~~~L~~l~~~~~~~~~~~~  156 (530)
                      -++ .|+..|.++.-+  .+.+..|.+.|++..+-+++.-..           +-.++..|..+|+||+.++..++..+.
T Consensus       313 H~lcaA~~~lMK~SFD--EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC  390 (2195)
T KOG2122|consen  313 HQLCAALCTLMKLSFD--EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC  390 (2195)
T ss_pred             hhhHHHHHHHHHhhcc--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            344 677777776433  688889999999998888775321           346899999999999999888888877


Q ss_pred             h-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-
Q 009636          157 D-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (530)
Q Consensus       157 ~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-  233 (530)
                      . .|++..++..|.+...++....+.+|.||+-. +...+..+-+.|-+..|.........+..++.++.+||||+.+. 
T Consensus       391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence            5 59999999999998889999999999999943 23356677788889999888767778888999999999999887 


Q ss_pred             -CCCChhhhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009636          234 -PQPPFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       234 -~~~~~~~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a  305 (530)
                       ....+-.+.|++..|+.+|.-.    .-.|++.+-.+|.|++   ...++..+.+.++..+..|++.|++.+..+..++
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa  550 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA  550 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence             3344556799999999998643    3557777777777665   3456677889999999999999999999999999


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                      |.+|+||+..+++..+.+.+.|.++.|..++.+. +..+-.-++.+|.|+....
T Consensus       551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            9999999999999999999999999999999998 8889999999999998754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.56  E-value=3.6e-12  Score=138.75  Aligned_cols=275  Identities=18%  Similarity=0.205  Sum_probs=218.3

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.|+..|.++++.++..|+..|.++..            .++++.|+..|.+++ +.++..|+.+|..+....+   
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence            356888999999999999999999997642            236889999998887 9999999999988854111   


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                             ..+.|...|.++++.++..++.+|+.+....            ...++..+ .+.+..++..++++|..+-. 
T Consensus       685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence                   2356778888899999999999999874221            23466777 78899999999999987621 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                                  .+.|..++.++++.|+..++.+|+.+.....         ..++.|..++.++++.++..|+.+|+.+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        1346778889999999999999998865422         2367788999999999999999999998


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  392 (530)
                      ....          .+.+.+...|.++ ++.||..|+++|+.+...           ..++.|+.+|.+++..||..|++
T Consensus       803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence            5421          1235577888888 899999999999987432           25689999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009636          393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE  438 (530)
Q Consensus       393 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~  438 (530)
                      +|..+.  +++.         ..+.|...+++.|+.|+..+..+|.
T Consensus       861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            999972  2333         3667778899999999999998875

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=9e-12  Score=129.43  Aligned_cols=396  Identities=16%  Similarity=0.158  Sum_probs=271.2

Q ss_pred             CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .++.|...+. +.+++++..|+-.+|+++... -+.+..=.+..+-..|+..+.+...+.++...+.++..++...-.. 
T Consensus        37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-  114 (1075)
T KOG2171|consen   37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-  114 (1075)
T ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence            5567777666 588999999999999998762 2222233334455566776666655899999999999999844222 


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +   =.++++.|.+..+++++..|+.|+.+|..+...-.. .+..+..  +.+.+.+.+ .+++..++..++.++..++.
T Consensus       115 ~---WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~  188 (1075)
T KOG2171|consen  115 K---WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALGAFAE  188 (1075)
T ss_pred             c---hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHHHHHH
Confidence            0   025678888999999999999999999998754332 1111111  233344445 44444499999999998887


Q ss_pred             CCC--CCChhhhhchHHHHHH----hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHH
Q 009636          232 GKP--QPPFDQVSPALPALAH----LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLI  303 (530)
Q Consensus       232 ~~~--~~~~~~~~~~l~~L~~----ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~  303 (530)
                      ..+  ..........+|.++.    .+..+|.+....++.++..++...+......+. .++...+.+..+.  ++.+|.
T Consensus       189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~  267 (1075)
T KOG2171|consen  189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH  267 (1075)
T ss_pred             HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence            764  2222334555665444    445667777788888888888776655544443 3455555555443  455666


Q ss_pred             HHHHHHhHhhcCCchhh---------------------------------------------HHHh------------hc
Q 009636          304 PALRTVGNIVTGDDMQT---------------------------------------------QCVI------------EY  326 (530)
Q Consensus       304 ~al~~L~nl~~~~~~~~---------------------------------------------~~~~------------~~  326 (530)
                      .|+.+|..++.+.+...                                             ...+            -.
T Consensus       268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p  347 (1075)
T KOG2171|consen  268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP  347 (1075)
T ss_pred             HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence            66666655543311000                                             0000            01


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH
Q 009636          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI  406 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~  406 (530)
                      -+++.+..++.+. +..-|+.+..+|+-++.|+.+.+...++ .+++.++..+.+++++||..|+.|++.++..-.++..
T Consensus       348 ~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq  425 (1075)
T KOG2171|consen  348 PLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ  425 (1075)
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence            2355666677788 8899999999999999999988877655 6899999999999999999999999999997665544


Q ss_pred             HHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHH
Q 009636          407 KFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK  485 (530)
Q Consensus       407 ~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~  485 (530)
                      ++ ....+++.|+..+++. ++.+...+..++.+++..+.+..      ..+|...+.+.    ++..|..+..+.+++.
T Consensus       426 k~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~------l~pYLd~lm~~----~l~~L~~~~~~~v~e~  494 (1075)
T KOG2171|consen  426 KK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI------LEPYLDGLMEK----KLLLLLQSSKPYVQEQ  494 (1075)
T ss_pred             HH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH------HHHHHHHHHHH----HHHHHhcCCchhHHHH
Confidence            44 5567788888888764 66899999999999998876643      44566555422    6777888888888887


Q ss_pred             HHHHHH
Q 009636          486 SVKLLE  491 (530)
Q Consensus       486 a~~il~  491 (530)
                      +...|-
T Consensus       495 vvtaIa  500 (1075)
T KOG2171|consen  495 AVTAIA  500 (1075)
T ss_pred             HHHHHH
Confidence            766654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.52  E-value=2.4e-12  Score=116.96  Aligned_cols=196  Identities=18%  Similarity=0.232  Sum_probs=163.2

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009636          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  192 (530)
                      .+.+-++.|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..++..+++.+++.|+++|.|++.+.+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            4556689999999977669999999999999877 78899999999999999999999999999999999999987765 


Q ss_pred             hhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636          193 CRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      .+..+-.  .++.+++.+.. .-+..++..++.+|.+|+.....  .......+|.++.++.+++..++..++++|.+++
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            4444432  46666665533 34788999999999999876433  2234568999999999999999999999999999


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcC
Q 009636          272 DGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~  315 (530)
                      .++. ....++..+++..++.++..+ +..+...++..+.||..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            8765 456688889999999999886 577899999999999653

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.49  E-value=1.7e-11  Score=119.90  Aligned_cols=370  Identities=14%  Similarity=0.093  Sum_probs=241.5

Q ss_pred             hcCCHHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009636           71 KLENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        71 ~~~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~  148 (530)
                      +.++++.++..++.+++  +.+.+.+..+..+.+++ ......+.+.+.++.|.++|++++...+....++++..+...+
T Consensus        49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~  127 (678)
T KOG1293|consen   49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS  127 (678)
T ss_pred             hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence            45789999999987654  45555666677777775 6778889999999999999998885688899999999999855


Q ss_pred             hhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009636          149 SEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (530)
Q Consensus       149 ~~~~~~~~--~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L  226 (530)
                      +..-..+.  ...+++.+..++..+.......-+....++++.. ..+......|+.+.+.-++ ...+...+..++.++
T Consensus       128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~  205 (678)
T KOG1293|consen  128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLCL  205 (678)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence            43333222  2345555555555233334444444444544433 4555666777666665555 555778888888888


Q ss_pred             h---hhccCCCCCChhh-----hhchHH--HHHHhhcCCChhHHHHHHHHHHHhccCCh----------------HH---
Q 009636          227 S---NFCRGKPQPPFDQ-----VSPALP--ALAHLIHSNDDEVLTDACWALSYLSDGTN----------------DK---  277 (530)
Q Consensus       227 ~---~L~~~~~~~~~~~-----~~~~l~--~L~~ll~~~d~~v~~~a~~~l~~l~~~~~----------------~~---  277 (530)
                      +   ++..+++......     ..++.+  .+.+++.+.+..-+..++.++.++...+.                +.   
T Consensus       206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q  285 (678)
T KOG1293|consen  206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQ  285 (678)
T ss_pred             hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHH
Confidence            8   6666554322211     133333  23334444444333334444433322210                00   


Q ss_pred             --------------------------------HHHHHHhCcHHHHHHhh-------------------------------
Q 009636          278 --------------------------------IQAVIEAGVFPRLAEFL-------------------------------  294 (530)
Q Consensus       278 --------------------------------~~~~~~~~~l~~L~~lL-------------------------------  294 (530)
                                                      .....+...++.+.+++                               
T Consensus       286 ~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~  365 (678)
T KOG1293|consen  286 YNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGL  365 (678)
T ss_pred             HhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhc
Confidence                                            00000011111111111                               


Q ss_pred             ---------------------CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636          295 ---------------------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       295 ---------------------~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                                           -..+...+..||.++-+++..-......+-...+..+|++++..+ +..|+..+..+|+
T Consensus       366 ~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~  444 (678)
T KOG1293|consen  366 EISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAIC  444 (678)
T ss_pred             chhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHH
Confidence                                 112334555666666665543322222223456888999999888 8899999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009636          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  433 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a  433 (530)
                      |+.-........++..|+|+.+..++.+.++.++..+.|+|.++..+++.+....+...-....+..+.+++++.|++.+
T Consensus       445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~  524 (678)
T KOG1293|consen  445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC  524 (678)
T ss_pred             HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence            99986667778899999999999999999999999999999999998776666666665566778888899999999999


Q ss_pred             HHHHHHHHHhh
Q 009636          434 LEGLENILKVG  444 (530)
Q Consensus       434 l~~l~~ll~~~  444 (530)
                      +..+.|+....
T Consensus       525 fqllRNl~c~~  535 (678)
T KOG1293|consen  525 FQLLRNLTCNS  535 (678)
T ss_pred             HHHHHHhhcCc
Confidence            99999997653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.48  E-value=2.5e-11  Score=132.17  Aligned_cols=277  Identities=18%  Similarity=0.225  Sum_probs=218.7

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009636          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (530)
Q Consensus       114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~  193 (530)
                      ....++.|+..|.+++ +.+|..|+..|+.+..           .++++.|...|.++++.++..|+.+|+.+....+  
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence            3456789999999988 9999999999998753           2457889999999999999999999998853222  


Q ss_pred             hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009636          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (530)
                              ..+.+...| .+.++.++..++.+|..+....           ...++..+.++|+.++..++++|..+.. 
T Consensus       685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence                    124566777 6789999999999998865321           2356778899999999999999987621 


Q ss_pred             ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636          274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       274 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                                   .+.|..++.++++.++..++.+|+.+.....         ..++.|..++.++ ++.+|..|+.+|+
T Consensus       744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg  800 (897)
T PRK13800        744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA  800 (897)
T ss_pred             -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence                         1346678999999999999999998865322         2367888999988 8999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009636          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  433 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a  433 (530)
                      ++....          .+++.++..+.++++.||..|+++|..+-..            ..++.|..+|+++++.|+..+
T Consensus       801 ~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A  858 (897)
T PRK13800        801 ELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAA  858 (897)
T ss_pred             hcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHH
Confidence            985431          1335678889999999999999999887431            256889999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009636          434 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE  491 (530)
Q Consensus       434 l~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~  491 (530)
                      +.+|..+ . ++                   ......|....++++.+|+..|...|+
T Consensus       859 ~~aL~~~-~-~~-------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        859 VLALTRW-P-GD-------------------PAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHhcc-C-CC-------------------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            9999885 1 11                   112467778888999999999988876

>PTZ00429 beta-adaptin; Provisional

Probab=99.48  E-value=4e-10  Score=117.54  Aligned_cols=261  Identities=14%  Similarity=0.092  Sum_probs=187.4

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.+++.+.+++.+++....-.+.+.+..  .+..-.+    ++..|.+=+.+++ |.+|..|+++++++-.  ++..
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~  138 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL  138 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence            3678889999999999999888888888654  2322222    3677888888887 9999999999998876  4444


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+     ++.+.+.+.+.++-+|..|+.++.++....++   .+...+.++.|.+++ .+.++.+..+|+.+|..++..
T Consensus       139 e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        139 EYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence            333     56788888899999999999999999766653   345567888899988 889999999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                      .+. ......+.+..|+..+...++..+..++.+|....-.++...     ..++..+...|++.++.+...|++++.++
T Consensus       210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            543 234445566667777767788888888888866432222211     25778888999999999999999999998


Q ss_pred             hcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009636          313 VTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (530)
Q Consensus       313 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (530)
                      ....+ .....+. ..+-+.++.++ ++ +++++..++..|.-++...+
T Consensus       284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P  329 (746)
T PTZ00429        284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP  329 (746)
T ss_pred             cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence            76432 2111111 12234455553 44 67788777777766655444

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.47  E-value=1.4e-12  Score=106.52  Aligned_cols=119  Identities=35%  Similarity=0.611  Sum_probs=110.3

Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC
Q 009636          111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS  190 (530)
Q Consensus       111 ~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~  190 (530)
                      .+++.|+++.+++++.+++ +.++..++++|.+++..+++....+++.|+++.++.++.++++.++..++|+|+|++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3567899999999999888 899999999999999988999999999999999999999999999999999999999988


Q ss_pred             chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       191 ~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+..+...|+++.+++++ .+.+..+++.++|+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77788888899999999999 66789999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=1.5e-11  Score=119.89  Aligned_cols=316  Identities=14%  Similarity=0.171  Sum_probs=219.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~  191 (530)
                      .++|.|+++|.+++ ...++-|..+|..++.++++..+.-+.    .-.+|.++++.+++++.+|..|+.++..+....+
T Consensus       128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence            46999999999988 788999999999999987766554221    2368999999999999999999999988765544


Q ss_pred             hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      ..-..-+ ..++..+..+. .+.++++++++|.++..|....+..-.....++++.++...+..|++|.-.||.....++
T Consensus       207 qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a  284 (885)
T KOG2023|consen  207 QALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA  284 (885)
T ss_pred             HHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence            2211111 12455566655 788999999999999999998887777788999999999999999999999999999988


Q ss_pred             cCChH--HHHHHHHhCcHHHHHHhhCCCC---------------------------------------------------
Q 009636          272 DGTND--KIQAVIEAGVFPRLAEFLMHPS---------------------------------------------------  298 (530)
Q Consensus       272 ~~~~~--~~~~~~~~~~l~~L~~lL~~~~---------------------------------------------------  298 (530)
                      +.+..  .....+. .++|.|+.-+..++                                                   
T Consensus       285 eqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd  363 (885)
T KOG2023|consen  285 EQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD  363 (885)
T ss_pred             cCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence            77531  1111111 45555554332211                                                   


Q ss_pred             -----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009636          299 -----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (530)
Q Consensus       299 -----~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (530)
                           |.+|..+..+|.-++.--.   +.++ .-++|.|-..|.++ +-.+|+.+..+++.++.|.-...-.-+ ..++|
T Consensus       364 D~~~dWNLRkCSAAaLDVLanvf~---~elL-~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip  437 (885)
T KOG2023|consen  364 DAFSDWNLRKCSAAALDVLANVFG---DELL-PILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIP  437 (885)
T ss_pred             cccccccHhhccHHHHHHHHHhhH---HHHH-HHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHH
Confidence                 3344443333333332111   1111 12455555556666 788999999999999987543221111 13789


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          374 PLVALLENAEFDIKKEAAWAISNATSGGTHEQI-KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       374 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                      .|+.+|.+..+-||.-.||+|+..+...-.+.. +++.  .++..|.+.+-+++.++++.|+.++..+-+.
T Consensus       438 ~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  438 FLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             HHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988763311111 2221  2455666666678899999999998877643

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.46  E-value=1.9e-12  Score=105.79  Aligned_cols=118  Identities=34%  Similarity=0.505  Sum_probs=110.3

Q ss_pred             HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009636          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (530)
Q Consensus       281 ~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (530)
                      +++.|+++.+++++.+.++.++..+++++++++...+.....+++.|+++.++.++.++ ++.++..++|+|+|++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998888888888999999999999998 99999999999999999887


Q ss_pred             HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .....+.+.|+++.|++++...+.+++..++++|.|++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            888888899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PTZ00429 beta-adaptin; Provisional

Probab=99.44  E-value=1.1e-09  Score=114.24  Aligned_cols=294  Identities=16%  Similarity=0.102  Sum_probs=207.7

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.+..+.+.|.+.+...+..|++.+....... .+.      +.+.+.+++++.+.+ ..++.-....+.+++...++..
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            35577788888888888888888776665443 222      224777888888888 8999999999999988666643


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      -.     +++.|.+=+.++++.+|-.|++++++|...  ..-+.     .+.++.+.+ .+.++.+++.|+.++..+...
T Consensus       104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence            22     367888888899999999999999998422  12222     456677777 788999999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                      .+.  .....+.++.|..++.+.|+.|..+|+.+|..+....+....  ...+.+..++..+...++-.+...+.+|...
T Consensus       171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            543  233456788899999999999999999999999866544332  2345677788888776766777777777553


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHH
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAA  391 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  391 (530)
                      ...++...     ..++..+...|++. ++.|.-+|+.++.++... +++....+.. .+.+.|+.++ ++++++|.-++
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaL  318 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVC  318 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHH
Confidence            32222111     35677888889998 899999999999988754 2333222221 2334555553 45567777777


Q ss_pred             HHHHHhhc
Q 009636          392 WAISNATS  399 (530)
Q Consensus       392 ~aL~nl~~  399 (530)
                      ..|.-++.
T Consensus       319 r~I~~i~~  326 (746)
T PTZ00429        319 KNIHALLV  326 (746)
T ss_pred             HHHHHHHH
Confidence            66655544

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.43  E-value=2.5e-10  Score=110.60  Aligned_cols=322  Identities=13%  Similarity=0.167  Sum_probs=230.1

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhc-----CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          160 AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       160 ~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-----~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .+..++.++.. ...++.+.++..+..+..+.+.....+.+.     ....+++.++ ...|..+...++.+++.+....
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhcC
Confidence            45666777765 567888888888888888877655555543     4677888888 6778899999999999998765


Q ss_pred             CCCCh-hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHH
Q 009636          234 PQPPF-DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV  309 (530)
Q Consensus       234 ~~~~~-~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L  309 (530)
                      +.... ......+..+...+.+. +...+.-++.++..+...+..+ ..+.+.++++.|+.+|+..  ...++..++.++
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            33221 22223444555666554 4566677778898888776654 5577788999999999764  457888999999


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHhCcHHHHHHHHhcC-
Q 009636          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN------REQIQAVIEANIIGPLVALLENA-  382 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~-  382 (530)
                      +-++...+ ........++++.++.+++......+-+-+..++.|+...+      ......+++.|+.+.+-.+.... 
T Consensus       212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            98887544 44455678999999999998767889999999999998732      22344566777766554444332 


Q ss_pred             -chhHHHHHHHH-------HHHhhcC---------C-------------CHHHHHHHHHcC--ChHHHHhccC-CCChHH
Q 009636          383 -EFDIKKEAAWA-------ISNATSG---------G-------------THEQIKFLVIQG--CIKPLCDLLV-CPDPRI  429 (530)
Q Consensus       383 -~~~v~~~a~~a-------L~nl~~~---------~-------------~~~~~~~l~~~~--~i~~L~~lL~-~~~~~~  429 (530)
                       |+++....-..       +..++..         |             -.+....|.+.+  ++..|+.+|+ +.|+.+
T Consensus       291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~  370 (429)
T cd00256         291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII  370 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence             55544322211       1111110         0             134555666554  3788999995 678888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      +..|+.=++.+++..|.           .+..++..|+-+.+.+|++|+|++|+..|...+++++.
T Consensus       371 laVAc~Dige~vr~~P~-----------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         371 LAVACHDIGEYVRHYPR-----------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             eehhhhhHHHHHHHCcc-----------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            89999999999988765           36778899999999999999999999999999998754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.42  E-value=2.3e-11  Score=126.56  Aligned_cols=328  Identities=19%  Similarity=0.195  Sum_probs=232.2

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ...+.+++.+.+.+...+..+--.+..+...  .+..-.+    ++..+.+=+.+++ +.++..|++++++++.  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            4789999999999999998888888877654  2332222    4667777788888 9999999999999985  5555


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+     ++.+.+++.++++.+|..|+.++..+....|..   +... .++.+.+++ .+.++.++.+|+.++..+ ..
T Consensus       113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            544     678899999999999999999999998665542   2222 578888888 788899999999999999 22


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                      .+..........+..|..++...++..+..++..+..++.........   ..+++.+..++.+.++.+...++.++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            111101344566666777777889999999999999888766544311   35677888888888888888888888877


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchhHHHHHH
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA  391 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~  391 (530)
                      .....      .-..+++.|..++.++ ++.++..++..|..++...+..+.     .. ...+..+. +.+..+|..++
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~-~~~~~~l~~~~d~~Ir~~~l  325 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQ-SLILFFLLYDDDPSIRKKAL  325 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----TH-HHHHHHHHCSSSHHHHHHHH
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hh-hhhhheecCCCChhHHHHHH
Confidence            65333      2345678888889877 888999999999999876533222     11 22233344 66788888888


Q ss_pred             HHHHHhhcCCCHHHHHHHHHcCChHHHHhcc-CCCChHHHHHHHHHHHHHHHhh
Q 009636          392 WAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       392 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ..|.+++..   .....     +++.|...+ +..+++++..++..+..+....
T Consensus       326 ~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~  371 (526)
T PF01602_consen  326 DLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF  371 (526)
T ss_dssp             HHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence            888888763   23232     456666666 4446667777777776665444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.42  E-value=2.5e-10  Score=118.79  Aligned_cols=326  Identities=20%  Similarity=0.225  Sum_probs=237.2

Q ss_pred             HHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636           77 VMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        77 ~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      .+.+.+.+.  +...+..++..+..+...+ . ..     +.+.+.+++++.+.+ ...+.-+.-++..+...+++....
T Consensus         8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~-~~-----~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l   79 (526)
T PF01602_consen    8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-Y-DI-----SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL   79 (526)
T ss_dssp             HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-C-CC-----chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence            344444444  6777777777777665443 2 12     246888899999777 899999999999999877763332


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                           ++..+.+-+.++++.++..|+.+|++++  .++..+.     .++.+.+++ .++++.+++.|+.++..+....|
T Consensus        80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p  146 (526)
T PF01602_consen   80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP  146 (526)
T ss_dssp             -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred             -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence                 3577888899999999999999999996  3323222     577788888 78889999999999999998754


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~  314 (530)
                      ..  .... +++.+..++.+.++.++..++.++..+ ...+.....+ -..++..|..++...++-.+..+++++..++.
T Consensus       147 ~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  147 DL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             CC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            32  1112 689999999999999999999999998 3333221112 22456677777788899999999999999987


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                      ..+.....   ..+++.+..++.+. .+.|..+++.++..+....+      .-..+++.|..++.+.++.++..++.+|
T Consensus       222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence            66544421   45778888888888 89999999999998865432      2235788999999999999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          395 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       395 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ..++... +..    +. .....+..+..++|..++..+++.|..+....
T Consensus       292 ~~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~  335 (526)
T PF01602_consen  292 SQLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES  335 (526)
T ss_dssp             HHHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred             HHhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence            9998863 222    22 22222333344888899999999999888644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.40  E-value=8.7e-14  Score=106.27  Aligned_cols=90  Identities=43%  Similarity=0.629  Sum_probs=60.2

Q ss_pred             CCCchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCcc-C-CCC-CchhhhcCCHHHHHHh
Q 009636            6 NSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAN-D-VNA-PGTAKKLENLPVMVAG   81 (530)
Q Consensus         6 ~~~~~~~~~~~k~-~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~-~-~~~-~~~~~~~~~l~~l~~~   81 (530)
                      +...+.|++.||+ +++++|+|+||++..++|||+||++.|.|||++........+. . ... .........++.++..
T Consensus         3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~   82 (97)
T PF01749_consen    3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG   82 (97)
T ss_dssp             ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred             ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence            4467899999999 5899999999999999999999999999999986543332111 1 001 1112223467899999


Q ss_pred             hcCCChHHHHHHHH
Q 009636           82 VWSNDSGVQYECTT   95 (530)
Q Consensus        82 l~s~~~~~~~~a~~   95 (530)
                      +.|+|+..|+.|..
T Consensus        83 v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   83 VNSDDPEVQLEATQ   96 (97)
T ss_dssp             HTSSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHhhC
Confidence            99999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.39  E-value=4.4e-10  Score=108.87  Aligned_cols=321  Identities=12%  Similarity=0.096  Sum_probs=226.0

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-----CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009636           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-----GVVPRFVEFLLREDYPQLQFEAAWALTNIASG  147 (530)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-----g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~  147 (530)
                      ....++..+.. ..+++....+..+..++... +.....+.+.     .....++.+|..++ .-++..|+.+|+.+...
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            45677777764 55677778888888888773 3334445443     56677888998877 89999999999999875


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHH
Q 009636          148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWT  225 (530)
Q Consensus       148 ~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~  225 (530)
                      .+.........-.++.|...+++ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +.+++..++.|
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            43321111111133455556655 346778889999999987766 8988888889999999996444 67999999999


Q ss_pred             hhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhhCCC-
Q 009636          226 LSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMHP-  297 (530)
Q Consensus       226 L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~-  297 (530)
                      ++-|+...+........++++.++.+++.. .+.+..-++.++.|+....      ......+++.|+++ ++..|... 
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK  289 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence            999998865444444578999999999865 6778888999999998743      12334566667655 44445442 


Q ss_pred             --CchhHHHHHHHH--------hHhhcC--------------Cchh---------hHHHh--hcCchHHHHHhhcCCCch
Q 009636          298 --SPSVLIPALRTV--------GNIVTG--------------DDMQ---------TQCVI--EYQALPCLLNLLSGNYKK  342 (530)
Q Consensus       298 --~~~~~~~al~~L--------~nl~~~--------------~~~~---------~~~~~--~~~~l~~L~~lL~~~~~~  342 (530)
                        ++++... +..|        -.+++.              ++.+         ...+-  +..++..|..+|..+.++
T Consensus       290 ~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         290 YDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence              3333221 1111        111110              1111         11112  124688999999655488


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .+...||.=|+.++...|.....+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus       369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            888999999999999888887777788999999999999999999999999988765

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=2.2e-10  Score=113.81  Aligned_cols=367  Identities=17%  Similarity=0.206  Sum_probs=233.7

Q ss_pred             CCHHHHHHhhc----CCChH-HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhc
Q 009636           73 ENLPVMVAGVW----SNDSG-VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~----s~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~-~~~~~~i~~~a~~~L~~l~~  146 (530)
                      +.+|.++..|.    .+.+. ++..++.++..+...- .|....--.+.++-.++.-+. .+.+..+|..|+.+|.|-..
T Consensus       125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe  203 (859)
T KOG1241|consen  125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE  203 (859)
T ss_pred             hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence            45666666554    44444 7778899999776442 222111112445566665544 33357899999999998654


Q ss_pred             CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009636          147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (530)
Q Consensus       147 ~~~-~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~  225 (530)
                      ... ......-.+-++...+..-.+++.+++..|+.+|..|..-..++-..-+....+..-+.-+ ++++.++.-.+...
T Consensus       204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEF  282 (859)
T KOG1241|consen  204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEF  282 (859)
T ss_pred             HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHH
Confidence            222 1111222234566677777889999999999999999754332222222222333344455 68899999999999


Q ss_pred             hhhhccCCCC-------------C--Ch----hhhhchHHHHHHhhcCCC-------hhHHHHHHHHHHHhccCChHHHH
Q 009636          226 LSNFCRGKPQ-------------P--PF----DQVSPALPALAHLIHSND-------DEVLTDACWALSYLSDGTNDKIQ  279 (530)
Q Consensus       226 L~~L~~~~~~-------------~--~~----~~~~~~l~~L~~ll~~~d-------~~v~~~a~~~l~~l~~~~~~~~~  279 (530)
                      .+++|.....             +  ..    .....++|.|+.+|...|       ......+..||.-++....+.  
T Consensus       283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~--  360 (859)
T KOG1241|consen  283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD--  360 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc--
Confidence            9988864311             1  01    123578888888887521       234445555555544332221  


Q ss_pred             HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                       ++. .+++.+-.-+++++|.-+..|..++|.+..+.+.....-+-.+.+|.++.++.++ .-.++..++|+++.++.+.
T Consensus       361 -Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l  437 (859)
T KOG1241|consen  361 -IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFL  437 (859)
T ss_pred             -chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhc
Confidence             122 4556666667889999999999999999999887777777789999999999977 8889999999999999876


Q ss_pred             HHHHHHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH----HHH---cCChHHHHhccC---CCChH
Q 009636          360 REQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF----LVI---QGCIKPLCDLLV---CPDPR  428 (530)
Q Consensus       360 ~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~----l~~---~~~i~~L~~lL~---~~~~~  428 (530)
                      ++.+..-. ..+.++.++.-|.+ .|++...++|++.+++..........    ...   ..++..|+..-+   ..+..
T Consensus       438 ~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN  516 (859)
T KOG1241|consen  438 PEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN  516 (859)
T ss_pred             hhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence            65432222 24566677766664 68999999999999985321000000    000   012333333332   24566


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 009636          429 IVTVCLEGLENILKVGEAE  447 (530)
Q Consensus       429 ~~~~al~~l~~ll~~~~~~  447 (530)
                      ++..+.++|..+++..+..
T Consensus       517 LR~AAYeALmElIk~st~~  535 (859)
T KOG1241|consen  517 LRSAAYEALMELIKNSTDD  535 (859)
T ss_pred             HHHHHHHHHHHHHHcCcHH
Confidence            8888888888888776553

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=3.6e-09  Score=106.40  Aligned_cols=343  Identities=16%  Similarity=0.185  Sum_probs=244.0

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .+|.|+.+|+. .+.+++..|++++..++..- ++....+++.++||.|++-|..-...++.++++.+|-.|+...+   
T Consensus       212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---  287 (1051)
T KOG0168|consen  212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---  287 (1051)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---
Confidence            57888888886 45899999999999997663 55677788999999999877766668999999999999998443   


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+.+.|++...+.++.--+..+++.|+.+..|+|..-+ +--..+++  .+|.|..+| ...|....++++-|+..++.
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD  364 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence            467889999999999987778899999999999995432 12233443  788888888 77888899999999999988


Q ss_pred             CC-CCCC---hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-----
Q 009636          232 GK-PQPP---FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-----  298 (530)
Q Consensus       232 ~~-~~~~---~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----  298 (530)
                      .. +.+.   .....+++....+++...+    ..+-.-.++.+.-++.+.+.....+.+.++...|..+|....     
T Consensus       365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na  444 (1051)
T KOG0168|consen  365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA  444 (1051)
T ss_pred             hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence            76 2222   2334677777777776543    234445667778888887766677777788887777775421     


Q ss_pred             ---------chhHHHHH----------------------------------------------------HHHhHhhc--C
Q 009636          299 ---------PSVLIPAL----------------------------------------------------RTVGNIVT--G  315 (530)
Q Consensus       299 ---------~~~~~~al----------------------------------------------------~~L~nl~~--~  315 (530)
                               +.-.....                                                    +++..+-.  +
T Consensus       445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~  524 (1051)
T KOG0168|consen  445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG  524 (1051)
T ss_pred             ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence                     10000000                                                    11110000  0


Q ss_pred             ---------CchhhHHHh----------hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-hCcHHH
Q 009636          316 ---------DDMQTQCVI----------EYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIE-ANIIGP  374 (530)
Q Consensus       316 ---------~~~~~~~~~----------~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~~  374 (530)
                               +..-...++          -..++|.|+++..+.-++.||..+..+|..+.. .+.+.+..++. .++-..
T Consensus       525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~  604 (1051)
T KOG0168|consen  525 TSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSH  604 (1051)
T ss_pred             cchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHH
Confidence                     000001111          124688888888877689999999999999887 56777777775 445556


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009636          375 LVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  423 (530)
Q Consensus       375 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~  423 (530)
                      +-.+|.+.+..|..-|+...--|+..-..-+...+...|++..+-.+..
T Consensus       605 lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  605 LAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            6678888888888888777776766545556777888899888877776

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=3.4e-09  Score=105.58  Aligned_cols=352  Identities=14%  Similarity=0.080  Sum_probs=231.5

Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009636           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      +..|.+..|...-.|..++..++..+ -|.-.+   .++++.|+.....+....++..++.+|+.+|.+-....-.-..+
T Consensus        96 l~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n~w---p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN  171 (859)
T KOG1241|consen   96 LRTLGSPEPRRPSSAAQCVAAIACIE-LPQNQW---PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN  171 (859)
T ss_pred             HHHcCCCCCCccchHHHHHHHHHHhh-CchhhC---HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence            34556667777777888888887765 444333   35677777777666634589999999999998543321111124


Q ss_pred             CChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCC------chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636          159 GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDS------PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       159 g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~------~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      .++..+++....  ++..+|-.|+.+|.|-....      +..|..     +++..+..- .++|.+++..|..||..+.
T Consensus       172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~-----iMqvvcEat-q~~d~~i~~aa~~ClvkIm  245 (859)
T KOG1241|consen  172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY-----IMQVVCEAT-QSPDEEIQVAAFQCLVKIM  245 (859)
T ss_pred             HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce-----eeeeeeecc-cCCcHHHHHHHHHHHHHHH
Confidence            677888887765  67889999999998754221      111222     233333333 6789999999999999887


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHH---HHH---------------HHhCcHHHHH
Q 009636          231 RGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI---QAV---------------IEAGVFPRLA  291 (530)
Q Consensus       231 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~---~~~---------------~~~~~l~~L~  291 (530)
                      .-. ......+...+++.-+..+.+++++|...++..-+++++..-+..   ...               .-.+++|.|+
T Consensus       246 ~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll  325 (859)
T KOG1241|consen  246 SLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL  325 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH
Confidence            643 222223334455666667788899888888777777764322200   001               1126788888


Q ss_pred             HhhCC-------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009636          292 EFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (530)
Q Consensus       292 ~lL~~-------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (530)
                      ++|.+       ++|.....|-.||.-++......   ++. .+++.+-.-++++ +.+-|..|+.+++.+..+......
T Consensus       326 ~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~L  400 (859)
T KOG1241|consen  326 ELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKL  400 (859)
T ss_pred             HHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhh
Confidence            88865       35677777777777666533322   222 4566666677788 889999999999999887544444


Q ss_pred             HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       365 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      .-+-.+.+|.++.++.++...++..+.|+|+.++................+..+..-| ...|.+..+++|++..+.+..
T Consensus       401 t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~  479 (859)
T KOG1241|consen  401 TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAA  479 (859)
T ss_pred             hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHH
Confidence            4444578999999999888899999999999999864321111112223344444444 357889999999999999655


Q ss_pred             hh
Q 009636          445 EA  446 (530)
Q Consensus       445 ~~  446 (530)
                      ..
T Consensus       480 ~e  481 (859)
T KOG1241|consen  480 YE  481 (859)
T ss_pred             HH
Confidence            44

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.18  E-value=2.1e-09  Score=106.37  Aligned_cols=345  Identities=13%  Similarity=0.098  Sum_probs=222.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCC-hhh
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGT-SEH  151 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~-~~~  151 (530)
                      .+.+++.-++++.+..+...+..+.++.+.-+...++.-.+...+..++..++.++ ...+......++.+-.... ...
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy  796 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY  796 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence            45677777888888888888888888876543333444334444555555555443 2233444444433322211 111


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh--hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~--~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      .     ..++..++..|.++++.++.+|+.+++.|+.--..|.  +.+...|.  .|...| ....+++.-..+.++..+
T Consensus       797 l-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI  868 (1172)
T KOG0213|consen  797 L-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI  868 (1172)
T ss_pred             h-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence            1     1245677888999999999999999999874322221  12223332  356666 777888888888888777


Q ss_pred             ccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636          230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~  308 (530)
                      +..- -.....-..+++|.|...|++....|+++++..++.++...++.+..---..+.--|+.+|...+..++..|..+
T Consensus       869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT  948 (1172)
T KOG0213|consen  869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT  948 (1172)
T ss_pred             HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6553 122223357889999999999999999999999999998776543322223455567888888899999999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      +|.|+..       +-.+.++..|+.-|+.. +...|.-...+++-.+..+..       -.++|.|+.=...++..||.
T Consensus       949 fG~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen  949 FGYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred             hhHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHH
Confidence            9999852       22334556666666554 443443333334333332111       13678887777778889999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                      -.+.+++.+......-..+++.  -+.+.|.+.|.+.|..-+..+..++..+.-.
T Consensus      1014 GVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence            9999999987643323333332  2466677778888888888888888777543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.15  E-value=1.4e-08  Score=94.90  Aligned_cols=323  Identities=12%  Similarity=0.073  Sum_probs=226.5

Q ss_pred             CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHH-------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 009636           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA  145 (530)
Q Consensus        74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~  145 (530)
                      .+..++.++... .++....++..+..+++..  .....+.       ....-+.++.+|...+ .-+...+.+++..++
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence            567788888753 3556667888888888874  3322221       1234667888998888 788888999999988


Q ss_pred             cCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh-cCCCchhHHHHHH
Q 009636          146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT  223 (530)
Q Consensus       146 ~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll-~~~~~~~~~~~a~  223 (530)
                      .............-....|...+.+ .+......|+.+|..+....+ .|..+...+++..++..+ ....+.+++...+
T Consensus       143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            7433221110000112344445555 667778888999999887766 788888888888898888 4555889999999


Q ss_pred             HHhhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHhCcHHHHHHhhCC
Q 009636          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLMH  296 (530)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~  296 (530)
                      .|++.|+.+++........+.++.|...+++. .+.|..-++.++.|+....+      +....++..++.+.+-.+...
T Consensus       222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r  301 (442)
T KOG2759|consen  222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER  301 (442)
T ss_pred             HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence            99999998875555555678899999999865 67888889999999997764      333445565555444443332


Q ss_pred             --CCchhHHHHHHHH-------hHhhcC--------------Cc---------hhhHHHh--hcCchHHHHHhhcCCCch
Q 009636          297 --PSPSVLIPALRTV-------GNIVTG--------------DD---------MQTQCVI--EYQALPCLLNLLSGNYKK  342 (530)
Q Consensus       297 --~~~~~~~~al~~L-------~nl~~~--------------~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~  342 (530)
                        +++++....-..-       -.+++.              +|         +....+.  +..++..|+++|+.+.+|
T Consensus       302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp  381 (442)
T KOG2759|consen  302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP  381 (442)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence              2333332221111       111111              11         0111112  235799999999988679


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636          343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      .+...||.-|+.+..+.|+....+.+.|+=..+++++.++|++||.+|+.|+..+..+
T Consensus       382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999888664

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=1.8e-07  Score=93.93  Aligned_cols=323  Identities=18%  Similarity=0.219  Sum_probs=238.6

Q ss_pred             CCHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCh-
Q 009636           73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTS-  149 (530)
Q Consensus        73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~-  149 (530)
                      +.++.|++.+.+.. .+.|..|++.|..+..    ..+..+...| ++.|++.|+.+. ++++...++..+.++..... 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            58899999888654 7889999999998753    3344454555 888899887543 58999999999998887442 


Q ss_pred             -----hh----------HHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhc-CChHHHHHhhc
Q 009636          150 -----EH----------TKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQ-GGLVPLLAQLN  211 (530)
Q Consensus       150 -----~~----------~~~~~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~-~~i~~Ll~ll~  211 (530)
                           +.          .+.++ ..+.|..|+..+...+-.+|..++..|.++.... ++.++.++.. -++..++.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 11          22333 3688999999999999999999999999988654 4556665543 3688999999 


Q ss_pred             CCCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCC---C-hhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009636          212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (530)
Q Consensus       212 ~~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (530)
                      .+..+.++..++..|..|.++.+... ......++..|..++...   | .-|..+|+..+.|+..+...+...+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            77888999999999999999985544 345678888899998754   3 468889999999999988888888999999


Q ss_pred             HHHHHHhhCCC---C-----chh-----HHHHHHHHhHhhcCCc-----hhh-HHHhhcCchHHHHHhhcCCC-chhHHH
Q 009636          287 FPRLAEFLMHP---S-----PSV-----LIPALRTVGNIVTGDD-----MQT-QCVIEYQALPCLLNLLSGNY-KKSIKK  346 (530)
Q Consensus       287 l~~L~~lL~~~---~-----~~~-----~~~al~~L~nl~~~~~-----~~~-~~~~~~~~l~~L~~lL~~~~-~~~v~~  346 (530)
                      +++|.++|...   +     |..     ...++.++..++.-..     .+. ..+...+++..|..++.++. ..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            99999887642   2     322     2345666666654221     222 34557789999999998773 568999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC----------cHHHHHHHHhcC-chhHHHHHHHHHHHhhcCC
Q 009636          347 EACWTVSNITAGNREQIQAVIEAN----------IIGPLVALLENA-EFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~----------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~  401 (530)
                      ++..+++++..++...-..+.+..          ++=.++.+..+. .+..|..+.+++..+....
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            999999999998877766665321          111222222333 6788999999998888753

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.10  E-value=1.1e-07  Score=89.07  Aligned_cols=322  Identities=14%  Similarity=0.159  Sum_probs=216.5

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhH------hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLV------LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       161 i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i------~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      +..++.+++. ..++....++..+..+...+......+      ...-.-.+.+.++ ...+.-+.....|+++.++...
T Consensus        67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g  145 (442)
T KOG2759|consen   67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACFG  145 (442)
T ss_pred             HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHhc
Confidence            4455556554 334455555555555554443211111      1222466778888 6777888888999999888776


Q ss_pred             CCCChh-hhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHH
Q 009636          234 PQPPFD-QVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV  309 (530)
Q Consensus       234 ~~~~~~-~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L  309 (530)
                      +..... ...-....|-..+.+ .+.+....+.+||..+...++-+.. ++...++..++..+.+  .+-.++...+.|+
T Consensus       146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifci  224 (442)
T KOG2759|consen  146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA-FVIADGVSLLIRILASTKCGFQLQYQSIFCI  224 (442)
T ss_pred             cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe-eeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence            332222 222233444555555 5677777888899888877765443 5556677788887733  4567888899999


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH------HHHHHHHHhCcHHHHHHHHhcC-
Q 009636          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR------EQIQAVIEANIIGPLVALLENA-  382 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~i~~L~~ll~~~-  382 (530)
                      .-|.. ++...+.+...+.++.|..++++.....|-+-++.++.|++...+      +....++..++.+.+-.+-... 
T Consensus       225 WlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky  303 (442)
T KOG2759|consen  225 WLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY  303 (442)
T ss_pred             HHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence            98876 555556666779999999999987677899999999999998553      4455666777766665554433 


Q ss_pred             -chhHHHHHHHH-------HHHhhcC---------C-------------CHHHHHHHHHcC--ChHHHHhccCCC-ChHH
Q 009636          383 -EFDIKKEAAWA-------ISNATSG---------G-------------THEQIKFLVIQG--CIKPLCDLLVCP-DPRI  429 (530)
Q Consensus       383 -~~~v~~~a~~a-------L~nl~~~---------~-------------~~~~~~~l~~~~--~i~~L~~lL~~~-~~~~  429 (530)
                       |+++....-..       ...++..         |             -.+....|.+.+  ++..|+.+|+.+ ||.+
T Consensus       304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i  383 (442)
T KOG2759|consen  304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII  383 (442)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence             55544332221       1112211         0             124455555543  488899999854 5888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636          430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                      ...|+.-++..++..+.           ....++..||-+.+.+|++|+|++|+.-|...+++...+
T Consensus       384 L~VAc~DIge~Vr~yP~-----------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  384 LCVACHDIGEYVRHYPE-----------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             eehhhhhHHHHHHhCch-----------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            88999999999988876           477899999999999999999999999999999887543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=3.9e-08  Score=90.90  Aligned_cols=190  Identities=21%  Similarity=0.245  Sum_probs=160.9

Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009636          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (530)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (530)
                      .+.+-+..++.-|..+++.- ++...+++.|++..++..+.+.+..+|..|+++++..+.+++.....+++.|+++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            35666777777777777654 34566888899999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009636          335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      ++.++.+..+|..|.++++.+...++.....+...+....|.+.+.+  .+..++..++..+..++... ......+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHHh
Confidence            99987567888999999999999999999999988889999999998  57889999999999998864 3333455566


Q ss_pred             CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636          413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       413 ~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      ++...+..+....+..+...++.++..++.....
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            7888888888888888888888888887765443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=2.5e-07  Score=92.00  Aligned_cols=218  Identities=17%  Similarity=0.162  Sum_probs=158.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .-+.++.+|.+.-|-++..|+-.+-++.-.- ++..+     ..+|.|++-|.++| |.++-.|+.+++.++..+|.+.-
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc
Confidence            3577788888888889998888888776442 12222     25899999999998 99999999999999998877653


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh--hc
Q 009636          154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN--FC  230 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~--L~  230 (530)
                           .+-|.+..+|.. .+.-+.-..+..+++|+--.|.....     .+++|.+++....-..+..-++.++..  ++
T Consensus       218 -----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s  287 (877)
T KOG1059|consen  218 -----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMS  287 (877)
T ss_pred             -----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence                 335777887754 44445566788888888666654443     688999999443344444444444432  22


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~  310 (530)
                      .+ .........-++..|-.++.++|+.+..-.+.+++.+....+..++.     .-+.++.+|.+.+++++..|+..+-
T Consensus       288 ~g-~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  288 SG-MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             cC-CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHH
Confidence            22 12334455677888888999999999999999999998777665442     3467899999999999999999988


Q ss_pred             Hhhc
Q 009636          311 NIVT  314 (530)
Q Consensus       311 nl~~  314 (530)
                      -++.
T Consensus       362 gmVs  365 (877)
T KOG1059|consen  362 GMVS  365 (877)
T ss_pred             HHhh
Confidence            7775

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.04  E-value=1.3e-08  Score=97.56  Aligned_cols=224  Identities=18%  Similarity=0.226  Sum_probs=166.8

Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHH------hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC
Q 009636          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIE------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ  327 (530)
Q Consensus       254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~  327 (530)
                      +.++++..+++..+..+....+...+.+..      ......++.++.++++.+...|+.+++.++...+....... .+
T Consensus        68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~  146 (312)
T PF03224_consen   68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE  146 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence            468899999999999998877766665554      23678888899999999999999999999987665543322 45


Q ss_pred             chHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH------hc-CchhHHHHHHHHHHHh
Q 009636          328 ALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL------EN-AEFDIKKEAAWAISNA  397 (530)
Q Consensus       328 ~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~-~~~~v~~~a~~aL~nl  397 (530)
                      .++.++.++.+.-   +..++..|+.+|.++.. .+..+..+++.++++.+..++      .+ .+..++.+++.++.-+
T Consensus       147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL  225 (312)
T PF03224_consen  147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL  225 (312)
T ss_dssp             HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence            6677777776421   55677899999999975 478888899999999999999      22 2678999999999999


Q ss_pred             hcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009636          398 TSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT  476 (530)
Q Consensus       398 ~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~  476 (530)
                      +.  +++....+...++++.|+++++ ....+++..++.++.|++...+..          +...+-.+|++..+..|+.
T Consensus       226 SF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~----------~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  226 SF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS----------NIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             TT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT----------HHHHHHHH-HHHHHHHHHS
T ss_pred             hc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH----------HHHHHHHccHHHHHHHHhc
Confidence            99  6688899999999999999987 456789999999999999776542          4677778999999999965


Q ss_pred             --CCCHHHHHHHHHHHH
Q 009636          477 --HDNAEIYEKSVKLLE  491 (530)
Q Consensus       477 --~~~~~v~~~a~~il~  491 (530)
                        ..|+|+.+.-..+-+
T Consensus       294 rk~~Dedl~edl~~L~e  310 (312)
T PF03224_consen  294 RKWSDEDLTEDLEFLKE  310 (312)
T ss_dssp             S--SSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence              489999887766654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=2.2e-08  Score=92.48  Aligned_cols=184  Identities=16%  Similarity=0.191  Sum_probs=154.6

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009636          130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (530)
Q Consensus       130 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l  209 (530)
                      +++-+..|+.-|-.++. +-++...++..|++..++.++.+.+..+|+.|+|+|+..+..+|..+..+++.|++..|+..
T Consensus        96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            47788889988988888 67788888999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009636          210 LNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (530)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (530)
                      +..+.+...+..|+++++.+.++.+.. ......+....|...+++  .+...+..++..+.++..........+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            977778888999999999999998443 334445568899999998  56778888999999998776655555666677


Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636          287 FPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       287 l~~L~~lL~~~~~~~~~~al~~L~nl~~  314 (530)
                      ...+..+....+..+...++.++..+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            7777777777888888888877766654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1.9e-06  Score=86.71  Aligned_cols=322  Identities=16%  Similarity=0.159  Sum_probs=233.2

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCc---
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP---  191 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~---  191 (530)
                      .|+.|++-+.+..-++-|..|++.|-.++.   +.+..+... +++.|++.|..  .++++...++.++.++....+   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            588899888776657789999999999887   556556554 48889999976  678999999999999985442   


Q ss_pred             ---h----------hhh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcC
Q 009636          192 ---R----------CRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS  254 (530)
Q Consensus       192 ---~----------~~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~  254 (530)
                         .          +.+ .+...+.+..++..+ ...|-.++.+++..+.++....|....   .....++..|+.+|..
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               1          111 233456777888888 778899999999999999887654322   3346778899999998


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC----CchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009636          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (530)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~  330 (530)
                      .-+.|+-.++..|..++..+....+.+.=..++..|+.++...    ..-+...|+..|.||...+....+.+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            8899999999999999988877666666668999999999763    235788899999999998888888888999999


Q ss_pred             HHHHhhcCCC--c--------hhH--HHHHHHHHHHHhc-CCH----HHH-HHHHHhCcHHHHHHHHhcC--chhHHHHH
Q 009636          331 CLLNLLSGNY--K--------KSI--KKEACWTVSNITA-GNR----EQI-QAVIEANIIGPLVALLENA--EFDIKKEA  390 (530)
Q Consensus       331 ~L~~lL~~~~--~--------~~v--~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a  390 (530)
                      .|.++|....  +        ..+  ...+..++.-+.. ++.    .+. ..+...+++..|+.++.++  ..+|+.++
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998875421  2        111  1345555666655 322    223 3455788999999988776  57899999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCC---------h-HHHHhccCC-CChHHHHHHHHHHHHHHHhh
Q 009636          391 AWAISNATSGGTHEQIKFLVIQGC---------I-KPLCDLLVC-PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~---------i-~~L~~lL~~-~~~~~~~~al~~l~~ll~~~  444 (530)
                      ..++.+++.+.. ..-..+.+-.+         + -.+..+..+ ..+..+..++.++..++-..
T Consensus       338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            999999998753 33333332211         1 122333333 44567777777777766443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.96  E-value=3.1e-08  Score=94.90  Aligned_cols=218  Identities=18%  Similarity=0.221  Sum_probs=157.1

Q ss_pred             CCCHHHHHHHHHHHHhhhCCCchhhhhHhh------cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009636          170 SPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (530)
Q Consensus       170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  243 (530)
                      +++.++...++..+..+..+.+...+.+..      .....++++++ ..+|..+...++.++..+....+........+
T Consensus        68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~  146 (312)
T PF03224_consen   68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE  146 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence            467889999999999999888866666554      23678889977 77799999999999999998876666554456


Q ss_pred             hHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-----CC--CCchhHHHHHHHHhHh
Q 009636          244 ALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-----MH--PSPSVLIPALRTVGNI  312 (530)
Q Consensus       244 ~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~~--~~~~~~~~al~~L~nl  312 (530)
                      .++.++..+.+    ++.+++..++.++.++..... ....+.+.++++.+..++     .+  ....++..++.+++-+
T Consensus       147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL  225 (312)
T PF03224_consen  147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL  225 (312)
T ss_dssp             HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence            66777766654    456677889999999986554 556688889999999999     22  3456888999999988


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcC--chhHHHH
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENA--EFDIKKE  389 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~--~~~v~~~  389 (530)
                      +. ++.....+.+.++++.|..+++......|.+-+..++.|++...++ ....++..|+++.+-.+....  |+++...
T Consensus       226 SF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  226 SF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             TT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             hc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            86 6666677888889999999998876889999999999999985443 677777877777766655433  6666654


Q ss_pred             H
Q 009636          390 A  390 (530)
Q Consensus       390 a  390 (530)
                      .
T Consensus       305 l  305 (312)
T PF03224_consen  305 L  305 (312)
T ss_dssp             H
T ss_pred             H
Confidence            3

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=1e-07  Score=98.27  Aligned_cols=271  Identities=19%  Similarity=0.225  Sum_probs=207.7

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009636           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (530)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  166 (530)
                      -+.|+.|...-....+.++.|+.+       +|.+++.|-++   --+..|+..|+.+..-.+-....-..-|++|++++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            356677777777777776666655       56667666543   34777999999998877888888888899999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHHHHHHHHhhhhccCCCCCChh-hhhc
Q 009636          167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFD-QVSP  243 (530)
Q Consensus       167 ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~  243 (530)
                      +|+++-.+++..-+.+...|..-++.|+..+++.++-..++..+..+.  +++-+..++++|+.++++.+..... ...+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            999999999999988888888777889988888888888888884322  5678889999999999987444433 3466


Q ss_pred             hHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----Cch
Q 009636          244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDM  318 (530)
Q Consensus       244 ~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~----~~~  318 (530)
                      ++..++..+.++ .+-++..+|-+|+.|-.+.+...-.-...+..+.|..+|.++-+.+|..|+.+|+.+..+    .++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            777888888875 688899999999999887765544455668889999999999999999999999999875    333


Q ss_pred             hhHHH------------hhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009636          319 QTQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE  368 (530)
Q Consensus       319 ~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (530)
                      +...+            ++..+.   -.++.+++.+ .+-++.+.+-+|+.++.+...+...+.-
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~  743 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG  743 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence            33222            222222   2566777888 8999999999999998876666554443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.91  E-value=2e-07  Score=90.21  Aligned_cols=360  Identities=13%  Similarity=0.079  Sum_probs=216.0

Q ss_pred             CCHHHHHHhhc----CCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcC-CHHHH-HHhhcCCCCHHHHHHHHHHHHHHh
Q 009636           73 ENLPVMVAGVW----SNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSG-VVPRF-VEFLLREDYPQLQFEAAWALTNIA  145 (530)
Q Consensus        73 ~~l~~l~~~l~----s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g-~v~~L-v~ll~~~~~~~i~~~a~~~L~~l~  145 (530)
                      +.+|.+.+.+.    .+.| .....++..+..++... .| -..+-.++ ++-.+ ..-++.+.+..+|..|+.+|.+-+
T Consensus       129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl  206 (858)
T COG5215         129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL  206 (858)
T ss_pred             ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence            35555555443    3443 46778888888876553 23 22222222 23333 334455555789999999998733


Q ss_pred             cCChhhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHH
Q 009636          146 SGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN  221 (530)
Q Consensus       146 ~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~  221 (530)
                      ..   .+..+..    +-+++..+..-+.++.+++..+..+|..|..-...+-+..++. .+-.+.....++++.++...
T Consensus       207 ~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~q  282 (858)
T COG5215         207 MF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQ  282 (858)
T ss_pred             HH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHH
Confidence            21   1111111    2344555666677899999999999998864333333333333 23333322237889999999


Q ss_pred             HHHHhhhhccCCCCCC-----------------hhhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHH
Q 009636          222 ATWTLSNFCRGKPQPP-----------------FDQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDK  277 (530)
Q Consensus       222 a~~~L~~L~~~~~~~~-----------------~~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~  277 (530)
                      +....+.+|.......                 ......++|.|+++|...       |..+...+..||--.+....+ 
T Consensus       283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-  361 (858)
T COG5215         283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-  361 (858)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence            9999988887642111                 112356899999999753       223444455555444332222 


Q ss_pred             HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       278 ~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                        .++. .++..+-+-+.+++|.-++.+..++|.+..+.......-+-...+|.+...+.++ .--++..++|+++.++.
T Consensus       362 --~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad  437 (858)
T COG5215         362 --KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD  437 (858)
T ss_pred             --HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence              1222 2455555667888999999999999999998876655555667899999999877 88899999999999986


Q ss_pred             CCHHHHHHHHHhCcHHHHHHHHh---cCchhHHHHHHHHHHHhhcCCCHHHH--HHHHHc---CChHHHHhcc--CCCCh
Q 009636          358 GNREQIQAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGGTHEQI--KFLVIQ---GCIKPLCDLL--VCPDP  427 (530)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~nl~~~~~~~~~--~~l~~~---~~i~~L~~lL--~~~~~  427 (530)
                      +-+..+..   .|-++..+....   .+.+.+...++|...|++.+-.+...  ..++-.   .++..|+..-  ...+.
T Consensus       438 ~va~~i~p---~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~  514 (858)
T COG5215         438 HVAMIISP---CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNES  514 (858)
T ss_pred             HHHHhcCc---cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccch
Confidence            54433222   222222222211   13578889999999999875422110  111111   1122222211  14556


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 009636          428 RIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       428 ~~~~~al~~l~~ll~~~~~  446 (530)
                      ..+.....+|+.++.+++.
T Consensus       515 n~R~s~fsaLgtli~~~~d  533 (858)
T COG5215         515 NLRVSLFSALGTLILICPD  533 (858)
T ss_pred             hHHHHHHHHHHHHHhhcch
Confidence            6777888888888876654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=1e-06  Score=88.92  Aligned_cols=296  Identities=15%  Similarity=0.162  Sum_probs=171.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      ..+.+-|++++.-++-.|+.++.++.+.   +.+.     .+.|.+.+++++.+ +.++..|+.|...+....++....+
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i~s~---Emar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f  180 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF  180 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhccCCH---HHhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence            3444455677777777888888877654   2222     24677778888877 8888888888888777666554444


Q ss_pred             H--------h--CCC----hHHHHHhhCCCC------HHHHHHHHHHHHhhhCCC--ch-----hhhhHhhcCChHHHHH
Q 009636          156 I--------D--HGA----VPIFVKLLYSPS------DDVREQAVWALGNIAGDS--PR-----CRDLVLSQGGLVPLLA  208 (530)
Q Consensus       156 ~--------~--~g~----i~~L~~ll~~~~------~~i~~~a~~~L~nl~~~~--~~-----~~~~i~~~~~i~~Ll~  208 (530)
                      +        +  .|+    +..+..+++...      ..+...-+..|.++....  ++     ..+.++.-. +-.+++
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr  259 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR  259 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence            2        1  333    333444443311      234455556666665332  11     111111111 112334


Q ss_pred             hhcCCCchhHHHHHHHHhhhhccCCCCCC---hhhh-----------------hchHHHHHHhhcCCChhHHHHHHHHHH
Q 009636          209 QLNGQPKLSMLRNATWTLSNFCRGKPQPP---FDQV-----------------SPALPALAHLIHSNDDEVLTDACWALS  268 (530)
Q Consensus       209 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~-----------------~~~l~~L~~ll~~~d~~v~~~a~~~l~  268 (530)
                      +| ...|.+.-..-...|..++++.....   ....                 .-++.+|-++|.+.|..++.-++..|.
T Consensus       260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~  338 (866)
T KOG1062|consen  260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL  338 (866)
T ss_pred             Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence            44 44556666666666666666542111   1111                 223445556666666666666666666


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH
Q 009636          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (530)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  348 (530)
                      .+...++...+..     =..++.+|++.+..++..|+..+-.|...+.  ..     ..+..|+.+|... +++++...
T Consensus       339 r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~~N--v~-----~mv~eLl~fL~~~-d~~~k~~~  405 (866)
T KOG1062|consen  339 RVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNESN--VR-----VMVKELLEFLESS-DEDFKADI  405 (866)
T ss_pred             hhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HH-----HHHHHHHHHHHhc-cHHHHHHH
Confidence            6665555433322     2468889999999999999999988885433  22     2356788889888 89999998


Q ss_pred             HHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636          349 CWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       349 ~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      +.-+..++. ..|+....      |..+.+.+...-.-|+..+...+..++..+
T Consensus       406 as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~  453 (866)
T KOG1062|consen  406 ASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANA  453 (866)
T ss_pred             HHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence            888888876 34443322      344555555443445555555555555444

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.89  E-value=1.1e-08  Score=99.53  Aligned_cols=266  Identities=17%  Similarity=0.143  Sum_probs=179.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh--hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC
Q 009636          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP  236 (530)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~--~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  236 (530)
                      -++..++.+|+++.+.++.+|+.+.+.|+.--..|  ...+...|.  .|..-+ ....+++.-..+.+++.+.......
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence            35677888999999999999999888876211111  122233332  244555 6677888888777777666543211


Q ss_pred             -ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636          237 -PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       237 -~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~  315 (530)
                       -..-..+++|.|...|++....+..+.+..++.++...++.+..---..+.--|+..|.+.+..++..|..++|.|+..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence             1223578999999999999999999999999999977765433222234555678888888999999999999999852


Q ss_pred             CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009636          316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (530)
Q Consensus       316 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  395 (530)
                             +-...++..|+.-|+.. +...|.-...+++-.+..+..       ..++|.|+.=...++..||.-.+.+++
T Consensus       761 -------iGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~  825 (975)
T COG5181         761 -------IGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMC  825 (975)
T ss_pred             -------cCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHH
Confidence                   22334566666666655 444444444444444332111       246777777777778899999999999


Q ss_pred             HhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          396 NATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       396 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      .+.........+++.  -+.+.|-+.|.+.|+.-+..+...+..+.-.+
T Consensus       826 fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         826 FMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            987754434444443  24566777888889988888888888776544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=5.3e-06  Score=85.87  Aligned_cols=330  Identities=16%  Similarity=0.174  Sum_probs=223.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHH-----HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009636           88 GVQYECTTQFRKLLSIERSPPIEEVI-----RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (530)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~-----~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  162 (530)
                      +-...++.+|+++++.  +|....+.     --|..+.+..++.....+.++..|+.++..++. +.++...+...|.+.
T Consensus      1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred             HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence            3455799999999987  44333222     237788888888766558999999999888877 889999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCC-Chhh
Q 009636          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP-PFDQ  240 (530)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~-~~~~  240 (530)
                      .|+.+|.+. +..++.++.+|..+++... .....++.|++..++.++..+...+.+..+...+..+..++ ..+ ....
T Consensus      1817 ~LL~lLHS~-PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHSQ-PSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred             HHHHHHhcC-hHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence            999999764 6789999999999976654 66677889999999998878888999999999999998876 111 1111


Q ss_pred             hhchH------------HHHHHhhcC--CChhH------HHHHHHHHHHhcc--------CCh------HH---------
Q 009636          241 VSPAL------------PALAHLIHS--NDDEV------LTDACWALSYLSD--------GTN------DK---------  277 (530)
Q Consensus       241 ~~~~l------------~~L~~ll~~--~d~~v------~~~a~~~l~~l~~--------~~~------~~---------  277 (530)
                      ...++            ...++.++.  +++++      +......+..+..        ++.      +.         
T Consensus      1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred             hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence            22222            233344432  22322      1112222222210        000      00         


Q ss_pred             --------HHHH-H------------HhCcHHHHHHhhCCCCch--hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009636          278 --------IQAV-I------------EAGVFPRLAEFLMHPSPS--VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (530)
Q Consensus       278 --------~~~~-~------------~~~~l~~L~~lL~~~~~~--~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (530)
                              ...+ .            -.++++.+.+++...++.  .......++-.+.+..+...+.+-..|.+|.++.
T Consensus      1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred             CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence                    0000 0            014556666666654432  2222334445556667777777777899999999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 009636          335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC  414 (530)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~  414 (530)
                      .+... ...+-+.|..+|..++.. .-....+.....+..++..+... +..-.-|+.+|..+......+.....+..|.
T Consensus      2055 Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGL 2131 (2235)
T ss_pred             HHHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence            99887 666778899999999764 35566666666677777776643 3455588999999988766677777788899


Q ss_pred             hHHHHhccCCC
Q 009636          415 IKPLCDLLVCP  425 (530)
Q Consensus       415 i~~L~~lL~~~  425 (530)
                      ++.|+.+|++.
T Consensus      2132 vpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2132 VPYLLQLLDSS 2142 (2235)
T ss_pred             HHHHHHHhccc
Confidence            99999999753

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=2.6e-06  Score=86.12  Aligned_cols=342  Identities=17%  Similarity=0.172  Sum_probs=230.7

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.+++.....|-+.....--.+.+.+...  |...    .++++.+++=..+++ +.++..|++.++.+.-  +...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence            46799999999999888877777788777653  3322    245777777667777 9999999988877665  2222


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      .     .+...+...+++.++.++..++.+..++-..++   +.+...|++..|-.++ .+.++.+..+|+.+|..+...
T Consensus       120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            2     235778899999999999999999888865543   4677889999999999 688999999999999999988


Q ss_pred             CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      .+. .........+..++..+...++.-+..++.++.+-.-.++....     .++.++...|.+.+..+...+...+..
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            754 33344455555566666555666666666666555443332222     456778888888888888888888777


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ-------------------------AV  366 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l  366 (530)
                      +........ ..+-..+-+.++.++... . +++..|..-+.-+....+....                         .+
T Consensus       266 ~~~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            765444322 222234555666666654 3 4444444433333332222110                         00


Q ss_pred             H-HhC---cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636          367 I-EAN---IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       367 ~-~~~---~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~  442 (530)
                      . +.+   ++..|......-|.+.-+++.+|+++++.....       .++++..|++++..+-..++..++..+..++.
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            1 111   333444444445888999999999999885321       16789999999997777777778888899988


Q ss_pred             hhhhh
Q 009636          443 VGEAE  447 (530)
Q Consensus       443 ~~~~~  447 (530)
                      ..++.
T Consensus       416 kyP~~  420 (734)
T KOG1061|consen  416 KYPNK  420 (734)
T ss_pred             cCCCc
Confidence            87764

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.80  E-value=4e-06  Score=81.51  Aligned_cols=349  Identities=12%  Similarity=0.029  Sum_probs=211.1

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-
Q 009636           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI-  156 (530)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-  156 (530)
                      .+..|.+..|..-..|+..+..++..+ -|+-.+   .|++..++.....+.....+.+++.++++++.....  +.++ 
T Consensus        99 al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~~w---p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li~  172 (858)
T COG5215          99 ALRALKSPEPRFCTMAAQLLAAIARME-LPNSLW---PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLIQ  172 (858)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHHHhh-Cccccc---hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHHH
Confidence            345677888888888888888877654 333222   345556666665555468899999999999984322  2222 


Q ss_pred             h-CCChHHHHHhh-CC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcC----ChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636          157 D-HGAVPIFVKLL-YS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG----GLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       157 ~-~g~i~~L~~ll-~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~----~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      . +.++-.++..- +. ++..+|-.++.+|.+-+..   .+..+-..+    +++..+..- +.++.+++..+..||..+
T Consensus       173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~ki  248 (858)
T COG5215         173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKI  248 (858)
T ss_pred             HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHH
Confidence            2 23344444443 33 6678899999988873211   111111111    223333333 678999999999999887


Q ss_pred             ccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHH---H-------------HHHHhCcHHHHHH
Q 009636          230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI---Q-------------AVIEAGVFPRLAE  292 (530)
Q Consensus       230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~---~-------------~~~~~~~l~~L~~  292 (530)
                      ..-. ...+..+...+.......+.++++++...+...-+.++....+..   +             .-.-.+++|.|++
T Consensus       249 m~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~  328 (858)
T COG5215         249 MMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLS  328 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHH
Confidence            6543 222222333344455677888888888777666655553321110   0             0011257899999


Q ss_pred             hhCC-------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHH
Q 009636          293 FLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQ  364 (530)
Q Consensus       293 lL~~-------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~  364 (530)
                      +|..       ++|.+-..|..||--.+.....   .+++ .++..+-.-+.++ +..-|+.|..+++.+..+..+ +..
T Consensus       329 LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT  403 (858)
T COG5215         329 LLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLT  403 (858)
T ss_pred             HHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHH
Confidence            9975       3566777776666555542221   2222 2455555666777 788899999999999886444 444


Q ss_pred             HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh-ccC--CCChHHHHHHHHHHHHHH
Q 009636          365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD-LLV--CPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       365 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~-lL~--~~~~~~~~~al~~l~~ll  441 (530)
                      +++ ...+|.+...+.++...++..++|+++.++.+-    ...+-..|-+...+. ++.  ...|.+..++.|...++.
T Consensus       404 ~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv  478 (858)
T COG5215         404 KIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLV  478 (858)
T ss_pred             hhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHH
Confidence            444 367888888888888899999999999998632    111111122222111 111  345677778888888887


Q ss_pred             Hhhhh
Q 009636          442 KVGEA  446 (530)
Q Consensus       442 ~~~~~  446 (530)
                      ....+
T Consensus       479 ~h~a~  483 (858)
T COG5215         479 DHIAK  483 (858)
T ss_pred             Hhhhh
Confidence            65544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=9.2e-06  Score=82.26  Aligned_cols=384  Identities=16%  Similarity=0.158  Sum_probs=218.1

Q ss_pred             CCCchHHhhhhhhHHHHHHHHhhh--HHHHhhh-hccc---cCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHHHHH
Q 009636           19 AVDADEGRRRREDNMVEIRKNKRE--ESLQKKR-REGL---QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYE   92 (530)
Q Consensus        19 ~~~~~e~~~~r~~~~~~lRk~~r~--~~l~~~R-~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~   92 (530)
                      .++..|.|+--......||+.-|+  ....+|| ++.-   -+..+.|.         -++.+ .-++++.+++--...-
T Consensus        20 akT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypa---------hFGqi-eclKLias~~f~dKRi   89 (866)
T KOG1062|consen   20 AKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPA---------HFGQI-ECLKLIASDNFLDKRI   89 (866)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCc---------cchhh-HHHHHhcCCCchHHHH
Confidence            456667777677777889999888  4444444 3210   01111111         23333 3455667766444433


Q ss_pred             HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC
Q 009636           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS  172 (530)
Q Consensus        93 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~  172 (530)
                      +--+..-++.. +.+ +..+    +...+.+=|++++ .-++-.|+.+|++++.  ++....+     .|-+-+++++.+
T Consensus        90 GYLaamLlLdE-~qd-vllL----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~~~  155 (866)
T KOG1062|consen   90 GYLAAMLLLDE-RQD-LLLL----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARDL-----APEVERLLQHRD  155 (866)
T ss_pred             HHHHHHHHhcc-chH-HHHH----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhCCC
Confidence            43333334433 222 2222    2344556666777 7888889999999987  6665544     577888999999


Q ss_pred             HHHHHHHHHHHHhhhCCCchhhhhH--------hh--cC----ChHHHHHhhcCCC-----chhHHHHHHHHhhhhccCC
Q 009636          173 DDVREQAVWALGNIAGDSPRCRDLV--------LS--QG----GLVPLLAQLNGQP-----KLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       173 ~~i~~~a~~~L~nl~~~~~~~~~~i--------~~--~~----~i~~Ll~ll~~~~-----~~~~~~~a~~~L~~L~~~~  233 (530)
                      +.++..|+.|...+..-.|..-+.+        .+  .|    .+..+..++..+.     -..+.......|.++....
T Consensus       156 ~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~  235 (866)
T KOG1062|consen  156 PYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSG  235 (866)
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999987666543332        22  23    3445555553322     1235666777788887765


Q ss_pred             CCCChh---hhhchHH----HHHHhhcCCChhHHHHHHHHHHHhccCChHHHH--HHHHhCcHHHHHHhhCCCCchhHHH
Q 009636          234 PQPPFD---QVSPALP----ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ--AVIEAGVFPRLAEFLMHPSPSVLIP  304 (530)
Q Consensus       234 ~~~~~~---~~~~~l~----~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~L~~lL~~~~~~~~~~  304 (530)
                      -.+...   ...++++    .++.+|...|++.-......|..++.+.+....  ..+-...+..++.+.  ++..++..
T Consensus       236 yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~Lrvl  313 (866)
T KOG1062|consen  236 YSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVL  313 (866)
T ss_pred             CCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHH
Confidence            222221   1233333    345566677777777777777777755432111  011111222222221  33445555


Q ss_pred             HHHHHhHhhcCCchhhHHHhh--------------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009636          305 ALRTVGNIVTGDDMQTQCVIE--------------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN  370 (530)
Q Consensus       305 al~~L~nl~~~~~~~~~~~~~--------------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (530)
                      |+.+||.+..+.+....++.-              ..-=..++.+|+++ +..+|+.|.-.+..+...  .++..     
T Consensus       314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----  385 (866)
T KOG1062|consen  314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----  385 (866)
T ss_pred             HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----
Confidence            666666655544433322210              11234577888888 899999998888777653  23333     


Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~  442 (530)
                      ++..|+..|...+.+++...+.-+..++..-.|+.. +     .++.+...++..-.-+...+...+..++.
T Consensus       386 mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~-W-----~idtml~Vl~~aG~~V~~dv~~nll~LIa  451 (866)
T KOG1062|consen  386 MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKR-W-----HIDTMLKVLKTAGDFVNDDVVNNLLRLIA  451 (866)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch-h-----HHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence            456888889888999999999999988876554321 2     24555555554333333333333334443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.75  E-value=1e-05  Score=83.21  Aligned_cols=410  Identities=16%  Similarity=0.185  Sum_probs=238.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHH-------------------------------------cC
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-------------------------------------SG  116 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-------------------------------------~g  116 (530)
                      .+..+++.|.+.++++|..|++++.-+++.-+...+..+++                                     ..
T Consensus        48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t  127 (1233)
T KOG1824|consen   48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT  127 (1233)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence            56788888899999999999999996665432223333221                                     11


Q ss_pred             CH----HHHHHhhcC-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc
Q 009636          117 VV----PRFVEFLLR-EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (530)
Q Consensus       117 ~v----~~Lv~ll~~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~  191 (530)
                      +.    |.|.+.+.. .+...++.+++.+++.+.......... +..+++..++..+.++...++..++.+|+.++...+
T Consensus       128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~  206 (1233)
T KOG1824|consen  128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN  206 (1233)
T ss_pred             HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence            11    122222211 111235555555555544422221111 233445556666667778899999999999997665


Q ss_pred             hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh---cCCChhHHHHHHHHHH
Q 009636          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALS  268 (530)
Q Consensus       192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll---~~~d~~v~~~a~~~l~  268 (530)
                      ..    ...+.+..|++-|.........+....+|..+|+......-.....++|.+.+..   +.+|.++++.++.++.
T Consensus       207 ~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale  282 (1233)
T KOG1824|consen  207 RD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE  282 (1233)
T ss_pred             HH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence            32    2234677888888677788888899999999999876555566678889998888   6778999999999998


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCCC----------------------------------CchhHHHHHHHHhHhhc
Q 009636          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHP----------------------------------SPSVLIPALRTVGNIVT  314 (530)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----------------------------------~~~~~~~al~~L~nl~~  314 (530)
                      .+....+..+-..+. .++..+++.+..+                                  +|.+|+.|+.++..+..
T Consensus       283 ~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is  361 (1233)
T KOG1824|consen  283 SFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS  361 (1233)
T ss_pred             HHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence            887666554443332 3445555554320                                  35799999999988765


Q ss_pred             CCchhhHHH------------------hhcCchHHHHHhhcCCC-------c-------------hhHHHHHHHHHHHHh
Q 009636          315 GDDMQTQCV------------------IEYQALPCLLNLLSGNY-------K-------------KSIKKEACWTVSNIT  356 (530)
Q Consensus       315 ~~~~~~~~~------------------~~~~~l~~L~~lL~~~~-------~-------------~~v~~~a~~~L~nl~  356 (530)
                      ...+....+                  +...++..++.+|.+..       +             ..++.....++.-+.
T Consensus       362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~  441 (1233)
T KOG1824|consen  362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ  441 (1233)
T ss_pred             ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH
Confidence            433222111                  11233444444443210       0             011111111111111


Q ss_pred             c----CCHHH-------HHHHH--------H--hCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009636          357 A----GNREQ-------IQAVI--------E--ANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQG  413 (530)
Q Consensus       357 ~----~~~~~-------~~~l~--------~--~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  413 (530)
                      .    .+-..       ...++        +  ..++|.++..+.+.  ....+..++..+.++.....++.....+ ..
T Consensus       442 ~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~-~~  520 (1233)
T KOG1824|consen  442 KQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL-SA  520 (1233)
T ss_pred             HHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch-hh
Confidence            0    00000       00011        0  12345555555433  4578889999998888876666544422 23


Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~  492 (530)
                      ..+++.....++-+++..-|+-....++++-...+....-+.+++...+-.    -.+..| ....+.+|+++|...+-.
T Consensus       521 Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~----~tl~rL~a~d~DqeVkeraIscmgq  596 (1233)
T KOG1824|consen  521 LSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD----CTLQRLKATDSDQEVKERAISCMGQ  596 (1233)
T ss_pred             hhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH----HHHHHHhcccccHHHHHHHHHHHHH
Confidence            455666666778888888888888888876654332111134455554432    233334 467889999999888776


Q ss_pred             hC
Q 009636          493 YW  494 (530)
Q Consensus       493 ~~  494 (530)
                      |.
T Consensus       597 ~i  598 (1233)
T KOG1824|consen  597 II  598 (1233)
T ss_pred             HH
Confidence            53

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.75  E-value=3.8e-06  Score=86.23  Aligned_cols=355  Identities=13%  Similarity=0.098  Sum_probs=220.1

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009636           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (530)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  156 (530)
                      .+++.+.+.|-+.++.|+.-|..-+... .-..+.=-+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence            6788899999999999999888766542 111111122356888999999988 999999999999999744333211  


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCC----hHHHHHhhcC-CCchhHHHHHHHHhhhhcc
Q 009636          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG----LVPLLAQLNG-QPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~----i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~  231 (530)
                        ..+..|+.-+-+.....+..+.-.|......-+......+...+    .+.+...+.. .....++..++..+.-+..
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence              23455655544444444444443333222222212222222223    3344443322 2233356666666555444


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG  310 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~  310 (530)
                      .....-..+...++..++.-+.++-..|+..++.+|+.++......   +. .++++.|++-|... .+......+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            3322222355667777777788888899999999999998654321   11 14566666666554 4445555677777


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc------
Q 009636          311 NIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN------  381 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------  381 (530)
                      .++.........- -..++|.+..+.   ... +.++|+.+..++.-+...+|..+-..+. .++..+++.+..      
T Consensus       239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            7776443222111 135678888888   555 7889999999999888776665544332 233344443320      


Q ss_pred             --------------------------C--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009636          382 --------------------------A--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  433 (530)
Q Consensus       382 --------------------------~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a  433 (530)
                                                +  ++.||++|+.++..++.. ..+....+.+ .+-+.++.-++..+..+....
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence                                      0  257999999999999885 4566655544 345667777888888888888


Q ss_pred             HHHHHHHHHhhhh
Q 009636          434 LEGLENILKVGEA  446 (530)
Q Consensus       434 l~~l~~ll~~~~~  446 (530)
                      ..++..++..-+.
T Consensus       394 f~~yi~ll~qt~~  406 (1233)
T KOG1824|consen  394 FHAYIALLKQTRP  406 (1233)
T ss_pred             HHHHHHHHHcCCC
Confidence            8888888765544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=4.7e-05  Score=75.52  Aligned_cols=314  Identities=16%  Similarity=0.137  Sum_probs=211.1

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      ++..+..-++.+. +.+|.....||..+........    ...+.+.+.+++......-+..+.+.++.+..+..  -..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence            4777888888888 8999999988887765221111    11345778888888788888899999998876654  345


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                      +.+.+++..+...+.+..+..-++.+..+....+..-..........++|.++..+.+..+.++..+..+...+...-..
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            56777888888888433333333345555544444433334445566777777777777888888877766555433221


Q ss_pred             -HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636          277 -KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       277 -~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                       ...     .+++.++.-+....|.....++..++.++...+.+.. ..-..++|.+.+.|.+. ++++|+.+..++.++
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence             111     3345555545555899999999999999987776653 34568999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHH------------------------------HhC----cHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          356 TA--GNREQIQAVI------------------------------EAN----IIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       356 ~~--~~~~~~~~l~------------------------------~~~----~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      +.  .+++ ++.++                              +..    ++|.|.+-+...+..+++.++..+.|++.
T Consensus       323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~  401 (569)
T KOG1242|consen  323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK  401 (569)
T ss_pred             HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence            87  3433 32221                              111    13333444444567788999999999987


Q ss_pred             CC-CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636          400 GG-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       400 ~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      -- ++.....++. .+++.|-..+....|+++..+..+|+.+++....
T Consensus       402 LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  402 LVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             hhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence            54 3333333222 3566666666777999999999999988875544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=1.6e-06  Score=84.14  Aligned_cols=322  Identities=16%  Similarity=0.079  Sum_probs=202.3

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009636          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  192 (530)
                      .-.+++|.++.++.+++ ..+++.|+..+.|++.... ......-..+...+.++....+..++. ++..+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            34678999999999988 8999999999999987321 111112234455666666555555544 44555555433222


Q ss_pred             hhh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636          193 CRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       193 ~~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      -++ .+--.+++|.|-..+ ...++..+...+.-+..|-..++..-......+++.|..+|..+.++|+.-+=.+++++.
T Consensus       158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            121 111122343343444 556788888877777766555433334456788899999999998888866555555443


Q ss_pred             c---CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHH
Q 009636          272 D---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKE  347 (530)
Q Consensus       272 ~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~  347 (530)
                      .   .++..   +--...++.++..+.++++.++..|+.-+.-++.-.+... ...-.|++..+++++.+. .+ .++..
T Consensus       237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~  311 (675)
T KOG0212|consen  237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEY  311 (675)
T ss_pred             HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHH
Confidence            1   12211   1112567888888999999999998877777765444332 334568888888998877 44 45544


Q ss_pred             HHHHHHHHhc--CCHHHHHHHHHh-CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009636          348 ACWTVSNITA--GNREQIQAVIEA-NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC  424 (530)
Q Consensus       348 a~~~L~nl~~--~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~  424 (530)
                      +..+-+.+..  +.+..... ++. .++..|.+.+.++..+.|..++.-+..+-.....+. -. -...+...|..-|.+
T Consensus       312 a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~-h~~~if~tLL~tLsd  388 (675)
T KOG0212|consen  312 AQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LV-HNDSIFLTLLKTLSD  388 (675)
T ss_pred             HHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hh-hccHHHHHHHHhhcC
Confidence            4433222222  11111111 332 367888888998889999999887777766432221 11 133567788888899


Q ss_pred             CChHHHHHHHHHHHHHHHhhhh
Q 009636          425 PDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       425 ~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      .+..++..++..+..++...+.
T Consensus       389 ~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  389 RSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             chhHHHHHHHHHHHHHhcCccc
Confidence            9999999999999998866543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=4.5e-05  Score=69.46  Aligned_cols=344  Identities=15%  Similarity=0.145  Sum_probs=229.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      ..|.+-..|..++..+...++..+..++...+...   +..++..|+++.++.++..++ .++...|...+..++. .+.
T Consensus        83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpa  160 (524)
T KOG4413|consen   83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPA  160 (524)
T ss_pred             hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHH
Confidence            34555566778888899999999998887643222   445668999999999999888 8999999999999998 788


Q ss_pred             hHHHHHhCCChHHHHH--hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636          151 HTKVVIDHGAVPIFVK--LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~--ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      ....++.+..+..+-.  +.-..+.-.+......+..|.+-++.....+...|.+..|..-+....|.-++.+++.....
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            8888888777654432  22234555677788888899888888888888999998888888666788888999999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh--H-HHHHHHHh--CcHHHHHHhhCCCCchh
Q 009636          229 FCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVFPRLAEFLMHPSPSV  301 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~--~-~~~~~~~~--~~l~~L~~lL~~~~~~~  301 (530)
                      |........+....+++..+...+.-.  +|--.-.++...+.+.....  + .-+.+++.  -+++..+..+...+++.
T Consensus       241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda  320 (524)
T KOG4413|consen  241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA  320 (524)
T ss_pred             HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence            988776777777788888888777633  33333333433333322110  0 00111111  23445556677789999


Q ss_pred             HHHHHHHHhHhhcCCchhhHHHhhcCc--hHHH-HHhhcCCCchhHHHHHHHHHHHHhcC---CHHHH---------HHH
Q 009636          302 LIPALRTVGNIVTGDDMQTQCVIEYQA--LPCL-LNLLSGNYKKSIKKEACWTVSNITAG---NREQI---------QAV  366 (530)
Q Consensus       302 ~~~al~~L~nl~~~~~~~~~~~~~~~~--l~~L-~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~---------~~l  366 (530)
                      +..|+.++|.+.+.. +..+.+...|-  ...+ ....... ...-+..+..+|.+++..   .++++         ..+
T Consensus       321 ieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcl  398 (524)
T KOG4413|consen  321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCL  398 (524)
T ss_pred             HHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHH
Confidence            999999999987643 34444444432  2222 2223322 333456677888888762   22221         111


Q ss_pred             H-H-------hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009636          367 I-E-------ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL  422 (530)
Q Consensus       367 ~-~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL  422 (530)
                      + +       ..-...+..+++.+.++++..+..++..++... .-....+...+++....+.-
T Consensus       399 ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP-WalkeifakeefieiVtDas  461 (524)
T KOG4413|consen  399 IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP-WALKEIFAKEEFIEIVTDAS  461 (524)
T ss_pred             HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc-HHHHHHhcCccceeeecccc
Confidence            1 1       123456666777788999999999999998853 33444444556666555543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.70  E-value=1.4e-06  Score=82.62  Aligned_cols=271  Identities=17%  Similarity=0.169  Sum_probs=186.3

Q ss_pred             HHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhh
Q 009636          110 EEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIA  187 (530)
Q Consensus       110 ~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~  187 (530)
                      +.+...|.+..|+.++..++ ...++.+|.+.|-.+..  .++++.+...| +..++.+.+. ..++.....+.+|.++.
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            44555788999999999887 23569999999999887  67888888777 5555555544 56788999999999999


Q ss_pred             CCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHH
Q 009636          188 GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPALPALAHLIHSNDDEVLTDACW  265 (530)
Q Consensus       188 ~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~  265 (530)
                      .++.+....++..|++..++-.. ...++.+.+.+..+|.|++-+..  .........+-..|..+-.+.|+-.+.++|.
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence            99888888899999999988888 67789999999999999987752  2223334555566777777778888999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH
Q 009636          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK  345 (530)
Q Consensus       266 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  345 (530)
                      +++.++.+.+- -..+.++|.+..+-.++.+-++.....   --...+.+.        ...-++.|+.+|++. ..+.+
T Consensus       330 AV~vlat~KE~-E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EAq  396 (832)
T KOG3678|consen  330 AVAVLATNKEV-EREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEAQ  396 (832)
T ss_pred             HHhhhhhhhhh-hHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhhh
Confidence            99999877543 344666777766666666555432111   001111111        123578889999876 55555


Q ss_pred             HHHHHHHHHHhc-CCH-HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          346 KEACWTVSNITA-GNR-EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       346 ~~a~~~L~nl~~-~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      ..+++-++-=+. .+. ....-+-+-|.|..|-++.++.+..-.+-|..+|.-+
T Consensus       397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            555554443332 111 1122344668899999998877654444455555444

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.70  E-value=7.6e-06  Score=81.94  Aligned_cols=332  Identities=13%  Similarity=0.087  Sum_probs=208.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +..++..|++.. +.++.+|+..++.++.--..  .-+.+...|  -.|-..|....+++.-..+.+|..|.....-.+-
T Consensus       801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence            444556677777 89999999988887752111  122333334  2366677778888776666655555422110000


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .---.+++|.|..+| ++....++.+++..+..+|...+.. .......+.--|+.+|.+.+.+++..+..++++++..-
T Consensus       878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence            001245788899999 7888999999999999999886432 22233445556788888899999999999999987542


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      .       -.+++..|+.-|+..+-..+....-+++-.+..+...       .++|.|+.=...+ +..|+.-...+++-
T Consensus       957 G-------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen  957 G-------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred             C-------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence            1       1244555555555544433433333444333322211       3566666666666 77788888888887


Q ss_pred             HhcCCHHH-HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-------CCC
Q 009636          355 ITAGNREQ-IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-------CPD  426 (530)
Q Consensus       355 l~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-------~~~  426 (530)
                      +.....+. ..++  ..+.|.|-+.|.+.|..-|..|+.++.+++.+..        -.|..+.++.+|+       ...
T Consensus      1022 ~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~s 1091 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETS 1091 (1172)
T ss_pred             HHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCC
Confidence            76522121 1122  2367778888888899999999999999998642        1244555555543       467


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636          427 PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       427 ~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                      |.++....+++..+-..-..                  .-.++.+.+=.-|+...|++..-.+.+..+-.
T Consensus      1092 Phviqa~~e~~eg~r~~Lg~------------------~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~ 1143 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLRVALGP------------------QAMLKYCLQGLFHPARKVRKRYWTVYNSMYHG 1143 (1172)
T ss_pred             hHHHHHHHHHHHHHHHHhch------------------HHHHHHHHHhccCcHHHHHHHHHHHHHhHhhc
Confidence            77887777776665432211                  11133444445789999999988888876554

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.67  E-value=1.3e-06  Score=82.81  Aligned_cols=266  Identities=14%  Similarity=0.077  Sum_probs=179.9

Q ss_pred             CCHHHHHHhhcCCChH--HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636           73 ENLPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      +.+..|++++++++.+  ++.+|.+.|..++..   .+.+.+..-| +..++.+-+....++.+...+.+|.++...+.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            5788999999988755  588999999999865   4566666555 444455444444489999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      ....++..|++..++-..+..++.+..+|+.+|+|++-+ ....+..+++..+-.-|.-+. .+.|.-++.+||.+.+.|
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            999999999999999999998999999999999999843 334556666666666666666 667888999999999999


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009636          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L  309 (530)
                      +..+.........+.+...-.++.+-|+.--..          ...+..+ -...+-++.|+.+|++.....+..+..-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            988755555555565655555666555532111          1111111 11224578899999876544444433333


Q ss_pred             hHhhcC-Cc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636          310 GNIVTG-DD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       310 ~nl~~~-~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                      +.=+.- +. .....+-+-|.++.|-.+.+++ +..-.+.|-.+|.-+
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi  450 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence            322211 11 1222344668899998888876 543334444444444

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=2.1e-06  Score=86.72  Aligned_cols=301  Identities=16%  Similarity=0.151  Sum_probs=184.2

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..+..++.-..+++|.++..|++....+   .....+..     +...+...+++.+ +-++..|+-+..++-..++   
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~v~~i~ey-----~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~~---  153 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCL---RVDKITEY-----LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDIDP---  153 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeE---eehHHHHH-----HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCCh---
Confidence            3555555556667777776666654422   11111222     4667888888888 8999999999888877544   


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      +.+.+.|+++.|-.++.+.++.+...|+.+|..|....+..-...+....+..++..+    +.-.-..-+.+|-.++..
T Consensus       154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y  229 (734)
T KOG1061|consen  154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEY  229 (734)
T ss_pred             hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhc
Confidence            3566789999999999999999999999999999866653111222222344444444    222223334455566666


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                      .+... .....++..+...+.+.++.+...+...+.++...-..... .+-..+-+.++.++.... .++..|++-+.-+
T Consensus       230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li  306 (734)
T KOG1061|consen  230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI  306 (734)
T ss_pred             CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence            55444 44566777778888888888888888888777655444222 233356666777776666 6666666665555


Q ss_pred             hcCCchhhHH-------------------------Hh-hcC---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009636          313 VTGDDMQTQC-------------------------VI-EYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (530)
Q Consensus       313 ~~~~~~~~~~-------------------------~~-~~~---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (530)
                      ....+.....                         +. +.+   ++.-+...-..- +.+..+++.+++++++..-.+. 
T Consensus       307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~-  384 (734)
T KOG1061|consen  307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS-  384 (734)
T ss_pred             HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence            4433321100                         00 111   222222222333 6778889999999998743221 


Q ss_pred             HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                           .+++..|++++...-..+..+++..+.++..
T Consensus       385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             -----hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence                 4567777777775544555566666666654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=2.3e-06  Score=88.62  Aligned_cols=248  Identities=16%  Similarity=0.196  Sum_probs=189.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+|.+++.|-|  .--++.|+..|.+++.-. ...+.....-|+.|.++++|+++. .+++.--+.+-+.|..-++.+..
T Consensus       473 QLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  473 QLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             hcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence            45666665554  345677999999988653 566777778899999999999998 89999888899998887888888


Q ss_pred             HHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636          154 VVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      .+++.++-.++++.|..   -+++-+..|+.+|+.|+.+-+--+..+.+.+.+...+..+.++..+-++..++-||..|-
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            88888778888888866   245788999999999998877778888899999988999955456788899999999998


Q ss_pred             cCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC----hHHHHHH------------HHhCcH---HHH
Q 009636          231 RGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT----NDKIQAV------------IEAGVF---PRL  290 (530)
Q Consensus       231 ~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~----~~~~~~~------------~~~~~l---~~L  290 (530)
                      .+.+.... .....+-..|..+|..+-++|+..++.+|+.+..+.    ++....+            ++.-+.   -.+
T Consensus       629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l  708 (1387)
T KOG1517|consen  629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL  708 (1387)
T ss_pred             hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence            88744433 344667788999998899999999999999987652    2222211            121111   256


Q ss_pred             HHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636          291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       291 ~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~  325 (530)
                      +.+++.+++-++....-++..++.+.......+.-
T Consensus       709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~  743 (1387)
T KOG1517|consen  709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG  743 (1387)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence            67778888888888888888888777655544433

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=2.2e-05  Score=81.90  Aligned_cols=382  Identities=13%  Similarity=0.122  Sum_probs=242.3

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      .+..-++.+...+.++..++..+.+++..-    ......++++|.+.++..+.. ..++..|...+.++........  
T Consensus       239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--  311 (759)
T KOG0211|consen  239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--  311 (759)
T ss_pred             HHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--
Confidence            344444555677889999999888887542    225567889999999998877 7999999998888876322111  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC--------------------CCchhh--------------------
Q 009636          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG--------------------DSPRCR--------------------  194 (530)
Q Consensus       155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~--------------------~~~~~~--------------------  194 (530)
                      -....+.+.+++...+.+..++.........++.                    +....+                    
T Consensus       312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~  391 (759)
T KOG0211|consen  312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY  391 (759)
T ss_pred             hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence            1122456777777777666666555444433331                    110000                    


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      ..+....+++.+-.++ .+.+..++...+.....+.--.+  ........+|.+...++..++.++.+..+.+..+-...
T Consensus       392 ~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~  468 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN  468 (759)
T ss_pred             cccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence            0011111222222222 34444555444444444332222  33344667788888888889999999998776654333


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      +..-...+....++.+..+-....|.++...++.+-.++....   ..+++...-+.+..++.+. ...+++.|+..+.-
T Consensus       469 ~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~  544 (759)
T KOG0211|consen  469 DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPA  544 (759)
T ss_pred             CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHH
Confidence            3222223444677888888777789999999998888875333   2344555666677777776 77899999988888


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHH
Q 009636          355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCL  434 (530)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al  434 (530)
                      ++.....   .......++.++.....++...|...+.++.-++.-...+.    ....+++.+.++..+..+.|+..++
T Consensus       545 l~~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nva  617 (759)
T KOG0211|consen  545 LVETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVA  617 (759)
T ss_pred             HHHHhCc---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHH
Confidence            8762211   11123467777777777678999999999988776443332    3345788999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009636          435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE  491 (530)
Q Consensus       435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~  491 (530)
                      ..|..+........              .+....+.++.|..+++.+++.+|.....
T Consensus       618 k~L~~i~~~L~~~~--------------~~~~v~pll~~L~~d~~~dvr~~a~~a~~  660 (759)
T KOG0211|consen  618 KHLPKILKLLDESV--------------RDEEVLPLLETLSSDQELDVRYRAILAFG  660 (759)
T ss_pred             HHHHHHHhhcchHH--------------HHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence            99999987653321              11223455666666777777666655444

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=9.5e-07  Score=85.11  Aligned_cols=305  Identities=14%  Similarity=0.112  Sum_probs=196.7

Q ss_pred             HHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCCh
Q 009636          179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDD  257 (530)
Q Consensus       179 a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~  257 (530)
                      ++.+|-.++..-...|.-+.+..+.+.|+++| +.++..+.-.++..++|+.-.. +-.......+++..|+.++.+.|.
T Consensus       409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            33444555555555677778888999999999 6666666667777777776655 334455668899999999999999


Q ss_pred             hHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch---hhHHHhhc----Cch
Q 009636          258 EVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEY----QAL  329 (530)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~---~~~~~~~~----~~l  329 (530)
                      .++.+..|.+.++..+.+...+ ..+..-.+..++.+..++.+.++..++.++.|+...+..   ..+..++.    -+.
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf  567 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF  567 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence            9999999999999877654322 244556789999999999999999999999999873322   22222221    256


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcC-----------chhHHHHHHHHHHHh
Q 009636          330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENA-----------EFDIKKEAAWAISNA  397 (530)
Q Consensus       330 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~nl  397 (530)
                      ..|++.+... +|-.-...|+.|.++++.+....+.+.. ..++..+.++|...           ...+-.....+..++
T Consensus       568 k~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l  646 (743)
T COG5369         568 KRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL  646 (743)
T ss_pred             HHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence            6777777777 7777777899999998866554444443 34555555544321           112222223333344


Q ss_pred             hcCCCHHHHHHHHHcCCh--HHHHhc---cCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHH
Q 009636          398 TSGGTHEQIKFLVIQGCI--KPLCDL---LVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE  472 (530)
Q Consensus       398 ~~~~~~~~~~~l~~~~~i--~~L~~l---L~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  472 (530)
                      ....+ .+-     .+..  +.+-.+   -..++.++.....|.+.++.-. +...+.. ...-.-++.+.+.|.-+-+.
T Consensus       647 ~e~~d-~f~-----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~-~~~~~vt-ratveR~~iL~~~G~~e~l~  718 (743)
T COG5369         647 SENSD-KFK-----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWK-EDGSEVT-RATVERIQILCANGIREWLV  718 (743)
T ss_pred             ccccc-ccc-----cceecCCCccccccccCCCchhhhhccceEEEecccC-ccCCccc-hhhHHHHHHHHHccHHHHHH
Confidence            33211 110     1111  122111   1123445666777777764321 1111000 01224578888899999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHh
Q 009636          473 SLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       473 ~l~~~~~~~v~~~a~~il~~~  493 (530)
                      .+|.++++.|++++-..+...
T Consensus       719 k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         719 KIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHhccCcHHHHHHHHHHHHhh
Confidence            999999999999999988753

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=5.6e-06  Score=80.47  Aligned_cols=318  Identities=13%  Similarity=0.109  Sum_probs=202.4

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..+++++..+.+.|..+++.||..+-+++...+.....  ....+...+.++..+++ ..++. ++..+-.+..+-....
T Consensus        84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES  159 (675)
T ss_pred             HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence            36788999999999999999999999887653222221  22445667777777766 55543 4444444433211111


Q ss_pred             H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636          153 K-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       153 ~-~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      + .+--.+++|.|-..+...++..|...+.-|..+-. .| ..+.+- -..+++.|.++| .+++.+++..+-.+++++.
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence            1 11113455666666666778888877777766632 22 233332 123567778888 7778888887777777766


Q ss_pred             cCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch-hHHHHHHH
Q 009636          231 RGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIPALRT  308 (530)
Q Consensus       231 ~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~~~~al~~  308 (530)
                      ..-. .+........++.++.-+.++++.++..++.-+..+..-.... -...-+|++..+++++.+.++. ++..+...
T Consensus       237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~  315 (675)
T KOG0212|consen  237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMV  315 (675)
T ss_pred             HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence            5542 2233356778899999999999999988776666665443322 1233458888888888887664 44443322


Q ss_pred             ---HhHhhcCCchhhHHHhhc-CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636          309 ---VGNIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       309 ---L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                         +..++.. +...+. ++. .+++.+.+.+.++ ..+.|..+..-+.-+-...+.+. ......+.+.|+..|.+.+.
T Consensus       316 n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd  391 (675)
T KOG0212|consen  316 NGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSD  391 (675)
T ss_pred             HHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchh
Confidence               2222221 111111 332 4788899999988 88888888755555544333332 22245789999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCC
Q 009636          385 DIKKEAAWAISNATSGGT  402 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~~~  402 (530)
                      +|...++..+.+++...+
T Consensus       392 ~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  392 EVVLLALSLLASICSSSN  409 (675)
T ss_pred             HHHHHHHHHHHHHhcCcc
Confidence            999999999999998543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=6.7e-05  Score=67.91  Aligned_cols=270  Identities=14%  Similarity=0.146  Sum_probs=177.3

Q ss_pred             HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009636          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (530)
Q Consensus       204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  282 (530)
                      ..++.++ .+.++.++..|+.-+..++.. +.... ......++.+.+++...++  ...++.++.|++....- ...++
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l-~~~ll   80 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL-RKKLL   80 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH-HHHHH
Confidence            4567777 788899999999988888876 22222 2235567778888877766  67888999999876543 34455


Q ss_pred             HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh--h----cCchHHHHHhhcCCCch-hHHHHHHHHHHHH
Q 009636          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI--E----YQALPCLLNLLSGNYKK-SIKKEACWTVSNI  355 (530)
Q Consensus       283 ~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~--~----~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl  355 (530)
                      +. ++..++..+.++.+.....++..++|++...+.....+.  .    .|++........++.+. .--...+.+++|+
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            54 888999999999889999999999999986654433222  2    45666666666555332 1224556677777


Q ss_pred             hcCCHHHHHHHHHhCcH--HHHHHHHhcCchhHHHH-HHHHHHHhhcCCCHHHHHHHHHc--CChHHHH-----------
Q 009636          356 TAGNREQIQAVIEANII--GPLVALLENAEFDIKKE-AAWAISNATSGGTHEQIKFLVIQ--GCIKPLC-----------  419 (530)
Q Consensus       356 ~~~~~~~~~~l~~~~~i--~~L~~ll~~~~~~v~~~-a~~aL~nl~~~~~~~~~~~l~~~--~~i~~L~-----------  419 (530)
                      +.. +..+..+.+...+  ..+.. +.+.+..+|+. .+.+|.|++...  ..-..++..  .+++.|+           
T Consensus       160 s~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  160 SQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             hhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence            653 3344444443322  22222 33345556554 467777877632  222333221  1122211           


Q ss_pred             ----------hccC-----CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHH
Q 009636          420 ----------DLLV-----CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIY  483 (530)
Q Consensus       420 ----------~lL~-----~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~  483 (530)
                                ++|.     .+|+.++...+++|..++.-..            .++.+..-|+...+.++ .+-+++++.
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~------------GRe~lR~kgvYpilRElhk~e~ded~~  303 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA------------GREVLRSKGVYPILRELHKWEEDEDIR  303 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH------------hHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence                      2332     3678899999999988775443            38889999999999988 456999999


Q ss_pred             HHHHHHHHHhCC
Q 009636          484 EKSVKLLETYWL  495 (530)
Q Consensus       484 ~~a~~il~~~~~  495 (530)
                      +.+.++++-...
T Consensus       304 ~ace~vvq~Lv~  315 (353)
T KOG2973|consen  304 EACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887765

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=8.1e-05  Score=77.51  Aligned_cols=306  Identities=13%  Similarity=0.195  Sum_probs=200.1

Q ss_pred             hhhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009636           69 AKKLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG  147 (530)
Q Consensus        69 ~~~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~  147 (530)
                      ...++.++-+...|.+ .++.+|..|+..+..+.+.  .+.+..+...|++..|+.+|.+.  |..+..++.+|..+++ 
T Consensus      1767 ~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S- 1841 (2235)
T KOG1789|consen 1767 ILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS- 1841 (2235)
T ss_pred             hhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-
Confidence            3455677888888874 7788999999998877655  68888999999999999999875  6899999999999999 


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC---chhhhhHhh----------cCChHHHHHhhc-C
Q 009636          148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS---PRCRDLVLS----------QGGLVPLLAQLN-G  212 (530)
Q Consensus       148 ~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~---~~~~~~i~~----------~~~i~~Ll~ll~-~  212 (530)
                      +++......+.|++..+..++.. .++..+.+++..++.+..+.   |..+-.+++          .+.-...+..+. .
T Consensus      1842 ~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T 1921 (2235)
T KOG1789|consen 1842 NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFEST 1921 (2235)
T ss_pred             CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhcc
Confidence            67777777788888888877654 67889999999999997653   222111111          011123333332 1


Q ss_pred             CCchh------HHHHHHHHhhhhcc----CC---CC--------------------------------------CChhhh
Q 009636          213 QPKLS------MLRNATWTLSNFCR----GK---PQ--------------------------------------PPFDQV  241 (530)
Q Consensus       213 ~~~~~------~~~~a~~~L~~L~~----~~---~~--------------------------------------~~~~~~  241 (530)
                      +.+++      .+......+..+..    ..   +.                                      ....+.
T Consensus      1922 ~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL 2001 (2235)
T KOG1789|consen 1922 SENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFL 2001 (2235)
T ss_pred             CCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHH
Confidence            11221      22222222222211    00   00                                      001122


Q ss_pred             hchHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636          242 SPALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                      .+++..+..++..+.+  ....-...++..+....+.....+-..|.+|.++..+...+..+-..|++.|..++. +...
T Consensus      2002 ~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C 2080 (2235)
T KOG1789|consen 2002 TELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFC 2080 (2235)
T ss_pred             HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHH
Confidence            4445555566654432  222333334444444555555555566999999999998888888999999999987 4455


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcC
Q 009636          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENA  382 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~  382 (530)
                      .+.+.....+..++..+...  +...--||.+|..+.. ...+.+...++.|++|.|+.+|+..
T Consensus      2081 ~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2081 CDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            56666666666677777653  3445577888887765 4456666777899999999999764

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.50  E-value=1.2e-05  Score=78.87  Aligned_cols=337  Identities=14%  Similarity=0.130  Sum_probs=207.9

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (530)
                      ++..++.+|.+.. |.++..|+...+.++.--  ....+.+...|  ..|-..|....+++.-..+.++..|..... ++
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~  680 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR  680 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence            4556677888887 899999998877766411  11223333334  235566677788887777777766653221 11


Q ss_pred             hh-HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636          195 DL-VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       195 ~~-i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                      .. ---.|++|.|..+| .+....+..+....+..+|...|.. .......+.--|+..|.+.+.+++.+|..++++++.
T Consensus       681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            11 01356889999999 7888999999999999999887542 222334455567888889999999999999999875


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      .-.       -.+++..|+.-|+..+-..+....-+++-.+..+..       ..++|.|+.=...+ +..|+.-...++
T Consensus       760 aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TP-e~nVQnGvLkam  824 (975)
T COG5181         760 AIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETP-EANVQNGVLKAM  824 (975)
T ss_pred             hcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence            421       113455555555555444444444444444432221       23566666555556 667787777777


Q ss_pred             HHHhcCCHH-HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhccCCCChHHH
Q 009636          353 SNITAGNRE-QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE-QIKFLVIQGCIKPLCDLLVCPDPRIV  430 (530)
Q Consensus       353 ~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~i~~L~~lL~~~~~~~~  430 (530)
                      +-+...... ...++  ..+.|.|-+.|.+.|+.-|..|...+.+++.++.-. ....++  .++..|..-+-.+.|.++
T Consensus       825 ~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~I--HLlNllwpNIle~sPhvi  900 (975)
T COG5181         825 CFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAI--HLLNLLWPNILEPSPHVI  900 (975)
T ss_pred             HHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHH--HHHHHhhhhccCCCcHHH
Confidence            776542111 12222  236677777888889999999999999999875211 011111  112222222335778888


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ....+++..+...-...                  -....+..=.-|++..|++..-...+..+-
T Consensus       901 ~~~~Eg~e~~~~~lg~g------------------~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv  947 (975)
T COG5181         901 QSFDEGMESFATVLGSG------------------AMMKYVQQGLFHPSSTVRKRYWTVYNIMYV  947 (975)
T ss_pred             HHHHHHHHHHHHHhccH------------------HHHHHHHHhccCchHHHHHHHHHHHhhhhh
Confidence            87777776665432210                  012345555679999999888777776543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=1e-06  Score=84.96  Aligned_cols=282  Identities=17%  Similarity=0.242  Sum_probs=188.8

Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC
Q 009636          111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS  190 (530)
Q Consensus       111 ~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~  190 (530)
                      .+.+..+++.|+++|+.++ ..+..-+...++|..-..+.....+...|++..|+.++.+.+..++....|.+..+..++
T Consensus       426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync  504 (743)
T COG5369         426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC  504 (743)
T ss_pred             hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence            3445678899999999877 677777888899988877888888999999999999999989999999999999998665


Q ss_pred             chh-hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC-C-Chhhh------hchHHHHHHhhcCCChhHHH
Q 009636          191 PRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-P-PFDQV------SPALPALAHLIHSNDDEVLT  261 (530)
Q Consensus       191 ~~~-~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~-~~~~~------~~~l~~L~~ll~~~d~~v~~  261 (530)
                      ... +-..+..-++..++.+. .++.-.++..++..|.|+..+... . .....      .-+...|++.++..+|-...
T Consensus       505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~  583 (743)
T COG5369         505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL  583 (743)
T ss_pred             cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence            432 33445556788899988 788899999999999999875422 1 11111      22455667777777776666


Q ss_pred             HHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCC-----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCch
Q 009636          262 DACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH-----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL  329 (530)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~-----------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l  329 (530)
                      ..+..+.+++..++...+.+.+ ...+..+..+|..           ....+..+-..+..++....+.....+.-.   
T Consensus       584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---  660 (743)
T COG5369         584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---  660 (743)
T ss_pred             hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---
Confidence            6788887777665544443332 3444444444321           122333344444444444333322222210   


Q ss_pred             HHHHHhhcC--CCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          330 PCLLNLLSG--NYKKSIKKEACWTVSNITA---G------NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       330 ~~L~~lL~~--~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      |.+-.+=..  ..+.++-.+..|.+.|+.-   +      +.+.++.+.+.|+-+.|..+...+++.||..+-.+|.|+
T Consensus       661 p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         661 PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            111111111  1134577788888888653   2      236677888888888888888888899999999999887

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00047  Score=70.13  Aligned_cols=367  Identities=14%  Similarity=0.147  Sum_probs=225.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .-..|..+|.|+.......|+..|..+....  ..+     +...|.+|+...+.+ .+++...---|...+...++.. 
T Consensus        36 ~~~dL~~lLdSnkd~~KleAmKRIia~iA~G--~dv-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA-  106 (968)
T KOG1060|consen   36 RHDDLKQLLDSNKDSLKLEAMKRIIALIAKG--KDV-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA-  106 (968)
T ss_pred             ChHHHHHHHhccccHHHHHHHHHHHHHHhcC--CcH-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce-
Confidence            3467888999998899999998887776553  223     235888999999888 8999988888888887554432 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                       +   =-|..+-+-|+++++.+|..|+++|+.|-..  .....     ++-++-+.. .+..+-+++.|+.++-.|-+-+
T Consensus       107 -L---LSIntfQk~L~DpN~LiRasALRvlSsIRvp--~IaPI-----~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd  174 (968)
T KOG1060|consen  107 -L---LSINTFQKALKDPNQLIRASALRVLSSIRVP--MIAPI-----MLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLD  174 (968)
T ss_pred             -e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh--hHHHH-----HHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCC
Confidence             1   2378899999999999999999998876211  11001     111222233 7788999999999999887765


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009636          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~  313 (530)
                      +...    ..++..+-.+|...++.|.-.|+.++-.+|-..-+.+.     +-..++..+|.+-+.--+..++.+|...+
T Consensus       175 ~e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYA  245 (968)
T KOG1060|consen  175 PEQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYA  245 (968)
T ss_pred             hhhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence            4332    25566677788888999999999998888754333222     44566777776644444555555555554


Q ss_pred             cCC---chh----------------------hHHHhhc---CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636          314 TGD---DMQ----------------------TQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       314 ~~~---~~~----------------------~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                      +..   +..                      .....+.   -++...-.+|.+. ++.|...+|.+...++-.+  +.  
T Consensus       246 R~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--~~--  320 (968)
T KOG1060|consen  246 RHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--QV--  320 (968)
T ss_pred             HhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--HH--
Confidence            311   100                      0000011   1234444566666 7778888887777776432  11  


Q ss_pred             HHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC----------------CHHHHHH--------HHHcC----ChHH
Q 009636          366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG----------------THEQIKF--------LVIQG----CIKP  417 (530)
Q Consensus       366 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~----------------~~~~~~~--------l~~~~----~i~~  417 (530)
                         ..+++.|+++|.+ +..+|.-.+..+..++...                ++.+++.        |....    ++.-
T Consensus       321 ---~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE  396 (968)
T KOG1060|consen  321 ---TKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRE  396 (968)
T ss_pred             ---HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence               2456778887765 3466666666666555422                2222221        12111    2334


Q ss_pred             HHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          418 LCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       418 L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      |..++.+.|..+...++.+|+......-...                .-++..|..|..+.++-|-..|...|.+...
T Consensus       397 ~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~----------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq  458 (968)
T KOG1060|consen  397 LQTYIKSSDRSFAAAAVKAIGRCASRIGSVT----------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ  458 (968)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHhhCchh----------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence            4455566777777777777777654432211                2234556666666666666666666665544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=0.00019  Score=71.34  Aligned_cols=328  Identities=16%  Similarity=0.202  Sum_probs=207.6

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..+++.+....+.+|.....++.-+...........     +.+.+.++++... ..-+..+++.+..+..+.  ...
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~  168 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE  168 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence            55777777778888999988888887654432233322     4677888888777 788899999999998854  334


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHH-HHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVRE-QAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~-~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      .+.+.+++..|...+.+.....+. .++.+.-..++. .+.....+..  .++.++... .+....++..+..+...+.+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence            556678889999988774443333 233333222211 1211112221  445555555 56678888888777766655


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      .-+.   .....++|.++.-+..........++..++.++...+.... ..-..++|.+.+.|.+..+.++..+..++-+
T Consensus       246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK  321 (569)
T ss_pred             hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence            4321   12234455555444444555667788888888877776555 4445899999999999999999999988888


Q ss_pred             hhcCCch-hhHHH------------------------------hhcCchHHHHHhhc----CCCchhHHHHHHHHHHHHh
Q 009636          312 IVTGDDM-QTQCV------------------------------IEYQALPCLLNLLS----GNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       312 l~~~~~~-~~~~~------------------------------~~~~~l~~L~~lL~----~~~~~~v~~~a~~~L~nl~  356 (530)
                      ++.--+. .++.+                              ++.-.+..++.+|+    .. +..+++.++.++.|+|
T Consensus       322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~  400 (569)
T KOG1242|consen  322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC  400 (569)
T ss_pred             HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence            7642210 01111                              11223444444443    33 5678899999999999


Q ss_pred             cC--CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009636          357 AG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  423 (530)
Q Consensus       357 ~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~  423 (530)
                      .-  ++..+..++. .++|.|-..+.+..|++|..+..+|+.+...-...   .+  .+.++.+...+.
T Consensus       401 ~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f--~d~~p~l~e~~~  463 (569)
T KOG1242|consen  401 KLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SF--DDLIPELSETLT  463 (569)
T ss_pred             HhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cc--cccccHHHHhhc
Confidence            83  4554444443 36677777777778999999999998887642211   11  345555555553

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00034  Score=70.40  Aligned_cols=255  Identities=16%  Similarity=0.161  Sum_probs=183.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      +-+-++.+|+++. |-++..|+.++..+....++...     ..+|.|..-|..+++.++..|+..++.||.-+|..-  
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence            4566788999888 89999999999999886666554     357999999999999999999999999998887531  


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHH--HhccC
Q 009636          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALS--YLSDG  273 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~--~l~~~  273 (530)
                         ...-|.+.+++.++.+.-+.-..+..+.+|+--.|    .....+++.|..+++++. ..+...++.++.  +++.+
T Consensus       217 ---L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 ---LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ---ccccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence               22567778888777777788888888888876543    334667888999988764 456666666653  34433


Q ss_pred             ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636          274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       274 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      ..+... .+. -.++.|-.++.+.++.++.-++.+++.++..++...+.     .-..++.+|.+. ++.+|-.|...|-
T Consensus       290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence            211111 111 24577778888999999999999999999877654432     245688899988 9999999999988


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCc-hhHHHHHHHHHHHhhcCC
Q 009636          354 NITAGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGG  401 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~nl~~~~  401 (530)
                      -+...  +++..     ++..|+..+...+ ...|.+.+.-+..++...
T Consensus       362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s  403 (877)
T KOG1059|consen  362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS  403 (877)
T ss_pred             HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence            88653  33333     3445555444333 366767666666666543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.48  E-value=0.00022  Score=73.04  Aligned_cols=383  Identities=15%  Similarity=0.112  Sum_probs=225.4

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNI  144 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~~L~~l  144 (530)
                      ..+.+.+..|++.+.+.++.++-.+.+++...+...  .+.+.+.=..+.+-++|.++.      ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            367889999999888899999999999988643222  234666655777888888732      256778888999999


Q ss_pred             hcCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009636          145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (530)
Q Consensus       145 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~  223 (530)
                      +. .++....---.+-||.|+..+.+.+. .+...|..+|..++ ..+.-+..+.+.|.++.|...+.+  .+.....++
T Consensus        85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al  160 (543)
T PF05536_consen   85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL  160 (543)
T ss_pred             cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence            98 44443211112568999999988666 89999999999999 445578888999999999999844  556677788


Q ss_pred             HHhhhhccCCCCC----ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHHHHH----hCcHHHHHHhh
Q 009636          224 WTLSNFCRGKPQP----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVFPRLAEFL  294 (530)
Q Consensus       224 ~~L~~L~~~~~~~----~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~----~~~l~~L~~lL  294 (530)
                      .++.+++......    .......+++.+...+...........+..+..+....+.. ......    ..+...+..+|
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            8888877654321    12223455666777776666666777788888876554211 111111    12334455555


Q ss_pred             CCC-CchhHHHHHHHHhHhhcCCc--------h-----hhHHHhhcC------chHHHHHhhcCCCchhHH--HHHHH-H
Q 009636          295 MHP-SPSVLIPALRTVGNIVTGDD--------M-----QTQCVIEYQ------ALPCLLNLLSGNYKKSIK--KEACW-T  351 (530)
Q Consensus       295 ~~~-~~~~~~~al~~L~nl~~~~~--------~-----~~~~~~~~~------~l~~L~~lL~~~~~~~v~--~~a~~-~  351 (530)
                      ++. .+.-|.+++...+.+.....        .     ..-.+++.-      .++.|....+.+..+...  -.+|+ +
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~i  320 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSI  320 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHH
Confidence            553 45567777766666653211        0     111111111      111111112211001111  11222 1


Q ss_pred             ----HHHHhc--------CCHHHHHHHHH--hCcHHHHHHHHhcC------chhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009636          352 ----VSNITA--------GNREQIQAVIE--ANIIGPLVALLENA------EFDIKKEAAWAISNATSGGTHEQIKFLVI  411 (530)
Q Consensus       352 ----L~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  411 (530)
                          +..++.        -+++....+..  .+.+...+++|...      ++..-..+..+|+......+....+.+  
T Consensus       321 lE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v--  398 (543)
T PF05536_consen  321 LEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV--  398 (543)
T ss_pred             HHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--
Confidence                122222        12334444432  34455555655432      333666778888888776554444443  


Q ss_pred             cCChHHHHhccCCCCh----------HHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHH
Q 009636          412 QGCIKPLCDLLVCPDP----------RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES  473 (530)
Q Consensus       412 ~~~i~~L~~lL~~~~~----------~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  473 (530)
                      .|.++.|+.+......          +.+...+=+|+.+....            ..+..+...||.+.+.+
T Consensus       399 ~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~------------~gr~~l~~~~g~~~l~~  458 (543)
T PF05536_consen  399 YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEE------------EGRKILLSNGGWKLLCD  458 (543)
T ss_pred             HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccH------------HHHHHHHhCCcHHHHHH
Confidence            3778888888764322          24444455555544322            24777777888777654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=6.3e-05  Score=68.51  Aligned_cols=318  Identities=14%  Similarity=0.136  Sum_probs=204.2

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHH--HHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF--VEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~L--v~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      +.++.++..+-.+|.++-..|...+..++..  ......+..+.....+  ..+-...+ .-.+......+..+.+-+++
T Consensus       128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence            4678888888889999999999999988654  3445555565555443  33333334 57788888899999998899


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-CchhHHHHHHHHhhh
Q 009636          151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSN  228 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-~~~~~~~~a~~~L~~  228 (530)
                      .......+|.+..|..-++. .+.-++..|+.....++.... .++.+.+.|.++.+.+++... .++--.-.++.....
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk  283 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK  283 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence            99999999999999888877 666778889988888885544 577888899999999888522 233222223444443


Q ss_pred             hccCCC--CCCh----hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc--HHHHH-HhhCCCCc
Q 009636          229 FCRGKP--QPPF----DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--FPRLA-EFLMHPSP  299 (530)
Q Consensus       229 L~~~~~--~~~~----~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~--l~~L~-~lL~~~~~  299 (530)
                      +.....  ....    ......+.....+++.+|++.+..++.+++.+.++.+. .+.+.+.|-  ...++ .....+..
T Consensus       284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah  362 (524)
T KOG4413|consen  284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH  362 (524)
T ss_pred             HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence            333221  1011    11122333445667788999999999999999877654 354555543  33333 33344445


Q ss_pred             hhHHHHHHHHhHhhcCC---chh----------hHHHhh-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636          300 SVLIPALRTVGNIVTGD---DMQ----------TQCVIE-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       300 ~~~~~al~~L~nl~~~~---~~~----------~~~~~~-------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                      .-+..++++|.+++...   +++          +..+.+       ..-+..+..+++.+ .++++-.+..++..++...
T Consensus       363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP  441 (524)
T KOG4413|consen  363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP  441 (524)
T ss_pred             chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence            55778888998887531   111          111111       13456677788887 8999999999999998765


Q ss_pred             HHHHHHHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHH
Q 009636          360 REQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAISN  396 (530)
Q Consensus       360 ~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~n  396 (530)
                      =.....+-..+++..+.+.-...   ..+.+.+++.++.+
T Consensus       442 WalkeifakeefieiVtDastEhaKaakdAkYeccKAiae  481 (524)
T KOG4413|consen  442 WALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE  481 (524)
T ss_pred             HHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence            44444444566666655533221   22344444544443

>TIGR02270 conserved hypothetical protein

Probab=98.41  E-value=0.00012  Score=71.97  Aligned_cols=242  Identities=17%  Similarity=0.059  Sum_probs=164.2

Q ss_pred             CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .++.++..+. .+++++...++..+..   .. .+        .++..|+..|.+.+ +.++..++.+|+.+-.      
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence            5677777774 4556666655554432   11 11        13778888888877 7899999988876544      


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                           ....+.|+.++.+.++.++..++.+++..-            ....+.+...+ ++.+..++..++.++..+...
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                 234577888888888888888887776621            11345677778 688899999999999887654


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                                ..++.|...+.+.++.|+..+++++..+..  ..         .+..+..+...........+..+++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      345667777888899999999998877643  21         123344433333333333333333333


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  392 (530)
                        +.+         .+++.|..+++.+   .++..++++++.+-..           ..++.|+..+...  .++..|..
T Consensus       237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHHH
Confidence              111         4678888888865   4999999999987432           3678888888644  49999999


Q ss_pred             HHHHhhcC
Q 009636          393 AISNATSG  400 (530)
Q Consensus       393 aL~nl~~~  400 (530)
                      ++..|+.-
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99999874

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.00031  Score=71.32  Aligned_cols=297  Identities=15%  Similarity=0.158  Sum_probs=172.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      +..+=+.|+++++.++-.|++.+..+   . -+.+.-+    ++-.+-++..+.. +-+|..|+.++..+-+-.++....
T Consensus       110 IntfQk~L~DpN~LiRasALRvlSsI---R-vp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~q  180 (968)
T KOG1060|consen  110 INTFQKALKDPNQLIRASALRVLSSI---R-VPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQ  180 (968)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhc---c-hhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHH
Confidence            34444455556666665555544422   1 1111111    1223334555666 889999999999998877777765


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-
Q 009636          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (530)
Q Consensus       155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-  233 (530)
                      +     +..+-.+|.+.++.+.-.|+.++-.+|-+.-+   .  -.+-...+.+++ .+-+.--+..++..|...|+.. 
T Consensus       181 L-----~e~I~~LLaD~splVvgsAv~AF~evCPerld---L--IHknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l  249 (968)
T KOG1060|consen  181 L-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERLD---L--IHKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQL  249 (968)
T ss_pred             H-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHHH---H--hhHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhcC
Confidence            5     35566677778888888888888888754322   1  122345566666 4444444444555555555443 


Q ss_pred             CCC-------------------------C---hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009636          234 PQP-------------------------P---FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (530)
Q Consensus       234 ~~~-------------------------~---~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (530)
                      +.+                         +   .....-++...-.++.+.++.+...++.++.+++-..+  ..     +
T Consensus       250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~-----~  322 (968)
T KOG1060|consen  250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VT-----K  322 (968)
T ss_pred             CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HH-----H
Confidence            111                         0   11123345555667888899999999999999874431  22     4


Q ss_pred             cHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH----------------HHh---------h----cCchHHHHHhh
Q 009636          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ----------------CVI---------E----YQALPCLLNLL  336 (530)
Q Consensus       286 ~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~----------------~~~---------~----~~~l~~L~~lL  336 (530)
                      ++..|+.+|.+. ..++.-.+..+..++...+....                .++         +    ..+++-+..++
T Consensus       323 i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI  401 (968)
T KOG1060|consen  323 IAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYI  401 (968)
T ss_pred             HHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence            456677776543 23444455555554432221110                000         1    12344555555


Q ss_pred             cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009636          337 SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ  405 (530)
Q Consensus       337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  405 (530)
                      .+. +..+...|..+|+.++.....     +...++.-|+.++.+.+..|..+++..+..+......++
T Consensus       402 ~s~-d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  402 KSS-DRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             hcC-chhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence            666 556777777788877653222     123456778888888888888888888888887654444

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.40  E-value=6.8e-06  Score=64.66  Aligned_cols=153  Identities=10%  Similarity=0.034  Sum_probs=123.7

Q ss_pred             chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009636          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK  407 (530)
Q Consensus       328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~  407 (530)
                      .+..|+.-+....+.+.+.....-|.|++. +|.+...+.+.+++..++..+...+..+..-++.+|||++.  ++...+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            345555555555477888888888888854 57778889999999999999999999999999999999998  667888


Q ss_pred             HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009636          408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  487 (530)
Q Consensus       408 ~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~  487 (530)
                      .+.+.+.++.++..++++...++..++.++..+...+..           .+..+-..-.++.++....+.+.+.+..|.
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-----------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~  162 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-----------ERDELLSPAVVRTVQRWRESKSHDERNLAS  162 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-----------hhHHhccHHHHHHHHHHHHHhhHHHHHHHH
Confidence            899999999999999999988888888887766544433           355666667788888888888888888888


Q ss_pred             HHHHHhC
Q 009636          488 KLLETYW  494 (530)
Q Consensus       488 ~il~~~~  494 (530)
                      ..++++-
T Consensus       163 ~fl~~~~  169 (173)
T KOG4646|consen  163 AFLDKHV  169 (173)
T ss_pred             HHHHhhc
Confidence            8888753

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.37  E-value=8.4e-05  Score=72.16  Aligned_cols=314  Identities=18%  Similarity=0.152  Sum_probs=193.9

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      +.+...+-+++.+++..|.+.+|.++..  ....+.+.+.++--.++.-|..++ +..-+.+|++.+..+..-.. ..+ 
T Consensus        28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~-  103 (371)
T PF14664_consen   28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK-  103 (371)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence            4444455566699999999999999876  567888888886666667776543 35668899998888877321 111 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      .+..|++..++.+..+++..++..|+.+|+.++-.+|.   .+...|++..|++.+.+ ...++...++.++..+...+.
T Consensus       104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence            12457889999999999999999999999999988774   67889999999999954 444588889999999988865


Q ss_pred             CCChhhhhchHHHHHHh-hcC------CCh--hHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCCCCchhHHH
Q 009636          235 QPPFDQVSPALPALAHL-IHS------NDD--EVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPSVLIP  304 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~l-l~~------~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~~~~  304 (530)
                      ........--+..++.- ...      ++.  +....+..++..+...=......... ...+..|+..|..+++.++..
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            44433332223322222 221      122  34455555555554332222111111 146788999999999999999


Q ss_pred             HHHHHhHhhcCCc-hhhHHH------hhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHH
Q 009636          305 ALRTVGNIVTGDD-MQTQCV------IEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIG  373 (530)
Q Consensus       305 al~~L~nl~~~~~-~~~~~~------~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~  373 (530)
                      .+..+..+..-.. ......      ...|-...-..+.   ... .......+ .--.++..+ ..-....+++.|+++
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~  337 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHRS-SKRPNLVNHYLALLLAILIEAGLLE  337 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCccc-cccccHHHHHHHHHHHHHHHcChHH
Confidence            9988888865322 111111      1111110000000   000 00000000 000011110 011223466899999


Q ss_pred             HHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009636          374 PLVALLENA-EFDIKKEAAWAISNATS  399 (530)
Q Consensus       374 ~L~~ll~~~-~~~v~~~a~~aL~nl~~  399 (530)
                      .|++++.+. +..+...|...|+.+..
T Consensus       338 ~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  338 ALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            999999887 88899999988887754

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=0.00017  Score=65.40  Aligned_cols=272  Identities=15%  Similarity=0.205  Sum_probs=170.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      .+..++.++.+.+|.++..|+..+..+...    ..+.+.  +...++.+.+++...+ +  ...|+.+|.|++. ....
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l   75 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEEL   75 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHH
Confidence            346789999999999999999888777543    222111  2346788899988776 4  6779999999999 6777


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-----CChHHHHHhhcCCC-c-hhHHHHHHH
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQLNGQP-K-LSMLRNATW  224 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-----~~i~~Ll~ll~~~~-~-~~~~~~a~~  224 (530)
                      ++.+.+. ++..+...+..+...+.+..+.+|+|++.+...+.......     ..+..++....+.. + ..-..+...
T Consensus        76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~  154 (353)
T KOG2973|consen   76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP  154 (353)
T ss_pred             HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence            7777766 77777778777766788889999999998887665544322     23333333332222 2 234566777


Q ss_pred             HhhhhccCCCCCChhhhhchHH--HHHHhhcCCChhHHH-HHHHHHHHhccCChHHHHHHHHh--CcHHHHH--------
Q 009636          225 TLSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEA--GVFPRLA--------  291 (530)
Q Consensus       225 ~L~~L~~~~~~~~~~~~~~~l~--~L~~ll~~~d~~v~~-~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~--------  291 (530)
                      +++||++.............+|  .+..+-. .+..++. ..+.+|.|++...... ..+++.  .+++.|+        
T Consensus       155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccc
Confidence            8888888765554444433333  3444433 4555543 3667777776544322 122221  1222222        


Q ss_pred             -------------HhhC-----CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636          292 -------------EFLM-----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       292 -------------~lL~-----~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                                   ++|.     .+++.++...+.+|--++. ....++.+...|+.+.+-.+-+...++++++.+-....
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq  311 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQ  311 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHH
Confidence                         2222     1356788888888888886 44455667777888877777776645666554444444


Q ss_pred             HHhc
Q 009636          354 NITA  357 (530)
Q Consensus       354 nl~~  357 (530)
                      .+..
T Consensus       312 ~Lv~  315 (353)
T KOG2973|consen  312 MLVR  315 (353)
T ss_pred             HHHh
Confidence            3433

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.34  E-value=0.00022  Score=69.34  Aligned_cols=318  Identities=15%  Similarity=0.075  Sum_probs=192.4

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChh
Q 009636          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFD  239 (530)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~  239 (530)
                      .+.+..++-+++.+++..+.+++..+..+... -..+.+.+.--.++.-+.. ..+..=+..|+..+..+...... ...
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence            44444444445589999999999888877764 4455555544444555533 33455567888888888776422 223


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                      .-.+++..++.+.++.++..+..++.+++.++-.+++   .+...|++..|...+.++...+....+.++..+.. .+..
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRT  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccch
Confidence            4578889999999999999999999999999977764   47788999999999988766677888888888886 3444


Q ss_pred             hHHHhhcCchHHHHHhhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHH
Q 009636          320 TQCVIEYQALPCLLNLLSGN------YKK--SIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      ++.+...--++.++.-+.+.      .+.  +.-..+..++..+...=+..+-...+ ...+..|+..|..+++++|...
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I  260 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI  260 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence            44444333344444444332      022  22334445555554421111111111 1468889999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHH------cCChHHHHhccC--CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHh
Q 009636          391 AWAISNATSGGTHEQIKFLVI------QGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI  462 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~------~~~i~~L~~lL~--~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l  462 (530)
                      +..+..+..-..+.....+..      .|-...-.++..  .+.......--..-.+++...-          --....|
T Consensus       261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~----------aLll~il  330 (371)
T PF14664_consen  261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYL----------ALLLAIL  330 (371)
T ss_pred             HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHH----------HHHHHHH
Confidence            999999987554332222111      111100000000  0000000000000001111110          1135567


Q ss_pred             hhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Q 009636          463 DDAEGLEKIESLQTHD-NAEIYEKSVKLLETYW  494 (530)
Q Consensus       463 ~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~  494 (530)
                      .++|.++.|.++.... ++.+..+|.-++.+++
T Consensus       331 i~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  331 IEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            7899999999987665 9999999999998765

>TIGR02270 conserved hypothetical protein

Probab=98.33  E-value=0.00022  Score=70.08  Aligned_cols=244  Identities=17%  Similarity=0.053  Sum_probs=168.2

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (530)
                      ..++.++..|....++.+...+++++.....  +.         .+..|+..|.+.++.++..++.+|+.+-  .     
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~-----  115 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQED--AL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG--G-----  115 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--c-----
Confidence            3578888888544437777766666542211  11         2788999999888889999999998652  1     


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                          ....+.|+.++ .+.++.++..++.++....           ....+.+..++.+.++.++..++++++.+...  
T Consensus       116 ----~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       116 ----RQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             ----hHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                12567788888 7778888888887766521           22356788888999999999999999997543  


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       276 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                               ..++.|...+.+.++.++..|+..++.+..  +         ..+..+....... .......+..++...
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence                     344567778999999999999999977643  2         1234455533333 333333333344333


Q ss_pred             hcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009636          356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE  435 (530)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~  435 (530)
                        +.+         ..++.|..++.+..  ++..++++++.+-..            ..++.|+..+....  +...+-+
T Consensus       237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHH
Confidence              222         36778888887654  999999999977553            35777777776443  8888899


Q ss_pred             HHHHHHHh
Q 009636          436 GLENILKV  443 (530)
Q Consensus       436 ~l~~ll~~  443 (530)
                      ++..|.-.
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            88887643

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.0019  Score=65.09  Aligned_cols=327  Identities=17%  Similarity=0.153  Sum_probs=193.0

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      .-+-+++|.++--...+.+--.+.-++..+ .+..+.     ++..+-+=|.+.+ +.....|+.+++|+.+  -+.+..
T Consensus        76 hmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea  146 (938)
T KOG1077|consen   76 HMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEA  146 (938)
T ss_pred             hHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHH
Confidence            345566666654444444444444444332 222322     2344444455566 7888999999999886  444444


Q ss_pred             HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          155 VIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       155 ~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      +..  -|+   ++|.+  ..+-++..++.+|..|-...|.   .+-..+....++.+| ++.+-.+...+...+..|+..
T Consensus       147 ~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~  217 (938)
T KOG1077|consen  147 FAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKK  217 (938)
T ss_pred             hhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHc
Confidence            431  233   55544  3356788888899888877664   333345678889999 666677777778888888776


Q ss_pred             CCCCChhhhhchHHHHHHhhc-------------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--
Q 009636          233 KPQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--  297 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--  297 (530)
                      .+..-.......+..|.....             -+.|.++...++.|.++-...+.... ..-..+++.++...+..  
T Consensus       218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~  296 (938)
T KOG1077|consen  218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPK  296 (938)
T ss_pred             CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCcc
Confidence            543332223333333333221             13577888888888887432221111 11113444444444421  


Q ss_pred             --C---chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcH
Q 009636          298 --S---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII  372 (530)
Q Consensus       298 --~---~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  372 (530)
                        +   ....-..+.-.-+++..-+..-+.+  ...+..|-.+|.+. +..+|.-|...++.++...+ ....+-. . .
T Consensus       297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~-h-~  370 (938)
T KOG1077|consen  297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SIDAVKK-H-Q  370 (938)
T ss_pred             ccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHHHHHH-H-H
Confidence              1   1122233333444544433332222  24577888889888 88999999999888887522 2222222 2 6


Q ss_pred             HHHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHH
Q 009636          373 GPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCL  434 (530)
Q Consensus       373 ~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al  434 (530)
                      ..++..|+ ..|..+|+.|+..|..++...+.+.        ++..|+..|...|+.+++-..
T Consensus       371 d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------IV~elLqYL~tAd~sireeiv  425 (938)
T KOG1077|consen  371 DTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------IVAELLQYLETADYSIREEIV  425 (938)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------HHHHHHHHHhhcchHHHHHHH
Confidence            67788888 5689999999999999988654332        466677777778887776443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.24  E-value=0.00074  Score=65.82  Aligned_cols=251  Identities=27%  Similarity=0.296  Sum_probs=170.6

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.+++.+.+.++.++..|+..+..+...            ..+|.+..++.+.+ +.++..|+.+|+.+-.  +   
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P---  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence            3678999999999999999999997765432            36899999999998 8999999998887664  2   


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCc-----------hhHHH
Q 009636          153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK-----------LSMLR  220 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~-----------~~~~~  220 (530)
                            ..++.|+.++. +.+..++..|.++|+.+-...           .+.+++..+.+...           ..++.
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                  34678888888 588999999999999873211           36677777733221           12344


Q ss_pred             HHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch
Q 009636          221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS  300 (530)
Q Consensus       221 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  300 (530)
                      .+...+..+-.          ....+.+..++...+..++..+..+++.+....         ..+.+.+...+.+.++.
T Consensus       168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            44444443332          334667777787787888888888888876554         24456777888888888


Q ss_pred             hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009636          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE  380 (530)
Q Consensus       301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  380 (530)
                      ++..++..++.+-..           ..+..+...+... +..++..+...+...  ..         ......+...+.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhh
Confidence            888888888776542           2345566667666 555554444444311  10         112344555566


Q ss_pred             cCchhHHHHHHHHHHHhhcC
Q 009636          381 NAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       381 ~~~~~v~~~a~~aL~nl~~~  400 (530)
                      +.+..++..+..++..+...
T Consensus       286 ~~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         286 DEANAVRLEAALALGQIGQE  305 (335)
T ss_pred             cchhhHHHHHHHHHHhhccc
Confidence            66677777777777776654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.21  E-value=3.8e-06  Score=53.18  Aligned_cols=41  Identities=41%  Similarity=0.674  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      ++++++.+++.|++|.|+.+|.+.+++++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.19  E-value=3.7e-06  Score=53.23  Aligned_cols=41  Identities=41%  Similarity=0.863  Sum_probs=38.1

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC
Q 009636          148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (530)
Q Consensus       148 ~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~  188 (530)
                      ++++++.+++.|+++.|+++|++.++.+++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.17  E-value=1.9e-05  Score=62.20  Aligned_cols=115  Identities=16%  Similarity=0.130  Sum_probs=99.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      .+..|+.-.....+.+.+.+...-|.|++. +|.+...+.+..++..++.-|..++..+++.++..|+|+|.+.. ..+.
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~   94 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKF   94 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHH
Confidence            456666655554458899999999999998 78888899999999999999999999999999999999998876 6778


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      +.+.++++.++..+ .++...+..+++.++..|+....
T Consensus        95 I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~R  131 (173)
T KOG4646|consen   95 IREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGER  131 (173)
T ss_pred             HHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCccc
Confidence            89999999999999 88888899999999999998763

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.17  E-value=0.0052  Score=61.55  Aligned_cols=346  Identities=16%  Similarity=0.156  Sum_probs=197.9

Q ss_pred             HHHHHhhcCCCh---HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           76 PVMVAGVWSNDS---GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        76 ~~l~~~l~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      |.++..|.+++.   ......+.+|..+...  .+-.+.++ ..++..+........+.+....++.+|.++.....+..
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~   78 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK   78 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence            567777776554   4566788888888654  23333322 24555555555444346777778888888766332222


Q ss_pred             -----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---------
Q 009636          153 -----KVVIDHGAVPIFVKLLYS-----P--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------  211 (530)
Q Consensus       153 -----~~~~~~g~i~~L~~ll~~-----~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---------  211 (530)
                           ....+..+++.+....-.     .  +..+.+.+..++..+...-+..++.-    .+..+..+..         
T Consensus        79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence                 233334477777776532     1  24556666666666654443322221    1223333321         


Q ss_pred             --CC----CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccC--ChHHHHHHH
Q 009636          212 --GQ----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDG--TNDKIQAVI  282 (530)
Q Consensus       212 --~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~--~~~~~~~~~  282 (530)
                        ..    .......-...+++.+   ++.........++..++.+..+. ++..+..++.+++.++..  .++...   
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l---~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSL---RKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcC---CcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence              00    1111222222333333   23333224445777777765544 577888888888888754  222222   


Q ss_pred             HhCcHHHHHHhh-CCCCchhHHHHHHHH----hHhh-cCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636          283 EAGVFPRLAEFL-MHPSPSVLIPALRTV----GNIV-TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       283 ~~~~l~~L~~lL-~~~~~~~~~~al~~L----~nl~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                        .++..+...+ .......+..++.++    -.++ ++++..      ..++..|+.++.+   +.+...++..+.-+.
T Consensus       229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~------~~~~~~L~~lL~~---~~~g~~aA~~f~il~  297 (415)
T PF12460_consen  229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA------TELLDKLLELLSS---PELGQQAAKAFGILL  297 (415)
T ss_pred             --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH------HHHHHHHHHHhCC---hhhHHHHHHHHhhHh
Confidence              3344444444 233334444444444    3333 233322      2346678888875   567888888888887


Q ss_pred             cCCHH--------HHHHHHHh----CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009636          357 AGNRE--------QIQAVIEA----NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC  424 (530)
Q Consensus       357 ~~~~~--------~~~~l~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~  424 (530)
                      ...++        .++.+.+.    .++|.|++.....+...+...+.||.++..+-....... --..+++.|++.|+.
T Consensus       298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~  376 (415)
T PF12460_consen  298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSL  376 (415)
T ss_pred             cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCC
Confidence            75332        33334333    357777777777777799999999999999765332221 123578889999999


Q ss_pred             CChHHHHHHHHHHHHHHHhhhh
Q 009636          425 PDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       425 ~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      +|++++..++.+|..++...+.
T Consensus       377 ~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  377 PDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             CCHHHHHHHHHHHHHHHHcCHH
Confidence            9999999999999999877643

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=4.5e-05  Score=75.71  Aligned_cols=220  Identities=14%  Similarity=0.125  Sum_probs=146.2

Q ss_pred             HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---h--HH-HH
Q 009636          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---N--DK-IQ  279 (530)
Q Consensus       206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---~--~~-~~  279 (530)
                      +..+. .+.|..++..|+.+|..|..+..     ....+....++++..++..|+..|+..+.-.....   .  +. -.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~k-----L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGFK-----LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhccccc-----ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 77788888888888888876431     22345566778888888999988865554433221   1  11 11


Q ss_pred             HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH--hc
Q 009636          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI--TA  357 (530)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~  357 (530)
                      .+.+ .++..+...+.+.++.++..|...||.+-.-+++.....++..++..+-..=...      +......++-  .+
T Consensus       277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSs  349 (823)
T KOG2259|consen  277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSS  349 (823)
T ss_pred             hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCccc
Confidence            2333 6788899999999999999999999998876666555555544443222211111      1111111111  11


Q ss_pred             C-----------CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009636          358 G-----------NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD  426 (530)
Q Consensus       358 ~-----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~  426 (530)
                      |           ..+.-..++..|..-.++.-+.+.=.+||+.|...++.++... |.+..     ..++.|++++.++.
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~-----~aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAV-----RALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHH-----HHHHHHHHHhccHH
Confidence            1           1122344667788888888888888899999999999999863 33322     25889999999999


Q ss_pred             hHHHHHHHHHHHHHHHhh
Q 009636          427 PRIVTVCLEGLENILKVG  444 (530)
Q Consensus       427 ~~~~~~al~~l~~ll~~~  444 (530)
                      ..++..++.+|..|....
T Consensus       424 ~~VRL~ai~aL~~Is~~l  441 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVHL  441 (823)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999887664

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.002  Score=64.88  Aligned_cols=300  Identities=17%  Similarity=0.165  Sum_probs=176.7

Q ss_pred             HHHhhcCCCCHH--HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh
Q 009636          121 FVEFLLREDYPQ--LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL  198 (530)
Q Consensus       121 Lv~ll~~~~~~~--i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~  198 (530)
                      -+++|++...++  +-+..+.+|   ...+.+..+.+     +..+..=|.+.++.....|+.+++|+-+..  .+..+.
T Consensus        79 aV~LLss~kysEKqIGYl~is~L---~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~re--~~ea~~  148 (938)
T KOG1077|consen   79 AVNLLSSNKYSEKQIGYLFISLL---LNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSRE--MAEAFA  148 (938)
T ss_pred             HHHHhhcCCccHHHHhHHHHHHH---HhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHHHhh
Confidence            467777665222  333333333   33344444333     345566666778888999999999984321  333321


Q ss_pred             hcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 009636          199 SQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (530)
Q Consensus       199 ~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~  277 (530)
                      .  -++   ++|. .+...-+++.++.||..|.+..|.  .....+-...++.+|...+-.+...+...+..++...++.
T Consensus       149 ~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD--l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~  221 (938)
T KOG1077|consen  149 D--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD--LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES  221 (938)
T ss_pred             h--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc--ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence            1  233   4443 334566788888888888887533  3333566778899998888888888887887777665543


Q ss_pred             HHHHHHhCcHHHHHHhhC---C----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chh
Q 009636          278 IQAVIEAGVFPRLAEFLM---H----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKS  343 (530)
Q Consensus       278 ~~~~~~~~~l~~L~~lL~---~----------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~  343 (530)
                      ....+. ..+..|..+..   .          +.|-+...+++.|.++-...+..... --..+++.++...+... ...
T Consensus       222 yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~-~l~evl~~iLnk~~~~~~~k~  299 (938)
T KOG1077|consen  222 YKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRA-RLNEVLERILNKAQEPPKSKK  299 (938)
T ss_pred             HhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHH-HHHHHHHHHHhccccCccccc
Confidence            332221 12222222221   1          35567788888888874433322211 11123333433333110 112


Q ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 009636          344 -----IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL  418 (530)
Q Consensus       344 -----v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L  418 (530)
                           .+....+-..+++.+-+..-..+.  ..+..|..++.+.+..+|.-|+..++.++..+.  ....+...  .+.+
T Consensus       300 vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h--~d~I  373 (938)
T KOG1077|consen  300 VQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKH--QDTI  373 (938)
T ss_pred             hHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHH--HHHH
Confidence                 233344444555543222222222  367788999999999999999999999998642  22222222  6777


Q ss_pred             HhccC-CCChHHHHHHHHHHHHHHHhhh
Q 009636          419 CDLLV-CPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       419 ~~lL~-~~~~~~~~~al~~l~~ll~~~~  445 (530)
                      +..|+ ..|..++..+++.|+.++....
T Consensus       374 i~sLkterDvSirrravDLLY~mcD~~N  401 (938)
T KOG1077|consen  374 INSLKTERDVSIRRRAVDLLYAMCDVSN  401 (938)
T ss_pred             HHHhccccchHHHHHHHHHHHHHhchhh
Confidence            88888 7899999999999999987653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.0015  Score=66.30  Aligned_cols=149  Identities=11%  Similarity=0.106  Sum_probs=92.0

Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009636          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ  405 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  405 (530)
                      |++--++.+|..+ +-++|+.+......++. .+.+.+-.+++..+...--. =...+...|..-..++..++.. -++.
T Consensus       317 ~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~-Fp~~  393 (948)
T KOG1058|consen  317 GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVK-FPEV  393 (948)
T ss_pred             HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhc-ChHH
Confidence            3444455667777 88888888877777665 45554444443322222111 0112356788888888888775 3343


Q ss_pred             HHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHH
Q 009636          406 IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK  485 (530)
Q Consensus       406 ~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~  485 (530)
                      ..     .+++.|++.+.+.++......+..+...+...++..          ...++     .-++.+-.-.+.+++.-
T Consensus       394 aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----------~~ii~-----~l~~~~~~irS~ki~rg  453 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----------ASIIE-----KLLETFPQIRSSKICRG  453 (948)
T ss_pred             HH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----------HHHHH-----HHHHhhhhhcccccchh
Confidence            33     468899999999998887777777777777666532          11111     12233344466777888


Q ss_pred             HHHHHHHhCCCCC
Q 009636          486 SVKLLETYWLDDE  498 (530)
Q Consensus       486 a~~il~~~~~~~~  498 (530)
                      |.+|+-.|.+++.
T Consensus       454 alwi~GeYce~~~  466 (948)
T KOG1058|consen  454 ALWILGEYCEGLS  466 (948)
T ss_pred             HHHHHHHHHhhhH
Confidence            8888888876555

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.11  E-value=0.00028  Score=64.21  Aligned_cols=238  Identities=16%  Similarity=0.144  Sum_probs=148.1

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHh
Q 009636          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVI  324 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~  324 (530)
                      .|-++++.-++-.+.-|..++.++....+.+.....+...-.+++.++++  +...++...+.++.-+.. ++...+.+-
T Consensus       153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~  231 (432)
T COG5231         153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDID  231 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHH
Confidence            33344444455566677788888876655544434444455677777776  345788888888888775 443332221


Q ss_pred             h-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhC-cHHHHHHHHhcC--chhHHHHHHHHHHHhhc
Q 009636          325 E-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN-IIGPLVALLENA--EFDIKKEAAWAISNATS  399 (530)
Q Consensus       325 ~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~-~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~  399 (530)
                      . ...+.-++.+.+..-...|-+-+|.++.|++.. ....+..+.-.| +.+..--++..+  |.+++...-..=..+..
T Consensus       232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~  311 (432)
T COG5231         232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ  311 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence            1 235666667776553567888899999999883 334444444334 544444444332  45544333222111111


Q ss_pred             C----------------C-------------CHHHHHHHHHc--CChHHHHhccCCCChH-HHHHHHHHHHHHHHhhhhh
Q 009636          400 G----------------G-------------THEQIKFLVIQ--GCIKPLCDLLVCPDPR-IVTVCLEGLENILKVGEAE  447 (530)
Q Consensus       400 ~----------------~-------------~~~~~~~l~~~--~~i~~L~~lL~~~~~~-~~~~al~~l~~ll~~~~~~  447 (530)
                      .                +             -......+...  .++..|..+++..++. ....|+.-+..+++..+. 
T Consensus       312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-  390 (432)
T COG5231         312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-  390 (432)
T ss_pred             hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-
Confidence            0                0             01233344433  3467778888777665 555677777777776654 


Q ss_pred             hhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636          448 KNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       448 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                                ....+...|+-+.|.+|++|++++|+-.|.+.++.+.++
T Consensus       391 ----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         391 ----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             ----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence                      477888999999999999999999999999999887654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.00025  Score=76.99  Aligned_cols=336  Identities=12%  Similarity=0.122  Sum_probs=198.1

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CChhhHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTK  153 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~  153 (530)
                      ..+...+.+.+|..|..++..+..+...-. .+.+. .....+...+.++|.+.+ .-.|..|.+-++-+-. ++....+
T Consensus       821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~-l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~  898 (1702)
T KOG0915|consen  821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVV-LMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK  898 (1702)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhh-hccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence            444556678999998887765554544322 22222 222345688899998887 7788888877665443 2233333


Q ss_pred             HHHhCCChHHHHHhhCC---------CCHHHHH-------------HHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009636          154 VVIDHGAVPIFVKLLYS---------PSDDVRE-------------QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~---------~~~~i~~-------------~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~  211 (530)
                      .+     +..|+.-|..         .+.++.+             ..-.=|+|||.+-..       -..+-.++++.+
T Consensus       899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-------PdLVYKFM~LAn  966 (1702)
T KOG0915|consen  899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-------PDLVYKFMQLAN  966 (1702)
T ss_pred             HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-------hHHHHHHHHHhh
Confidence            33     3444444321         1111111             111234444433211       113444566664


Q ss_pred             CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009636          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA  291 (530)
Q Consensus       212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~  291 (530)
                      .+....-+.-|++.+..++.............++|.|...=.+++..|+.....+-..+...+...+..... .+++-|+
T Consensus       967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL 1045 (1702)
T KOG0915|consen  967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELL 1045 (1702)
T ss_pred             hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHH
Confidence            444556666777777777766544444556777888887777888888766555555555554444444443 7888899


Q ss_pred             HhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHH---HHHHHHHHhc--CC---HHHH
Q 009636          292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE---ACWTVSNITA--GN---REQI  363 (530)
Q Consensus       292 ~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~---a~~~L~nl~~--~~---~~~~  363 (530)
                      .-+.+..|.+|+.+|.+|..|..+.+.....-.-..+...+...+++- ...||+.   ++.+|+.++.  ++   ....
T Consensus      1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred             HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence            999999999999999999999998764321100113455555566555 5667765   4566666664  11   1112


Q ss_pred             HHHHHhCcHHHHHH--HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009636          364 QAVIEANIIGPLVA--LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT  431 (530)
Q Consensus       364 ~~l~~~~~i~~L~~--ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~  431 (530)
                      ..+++ .++|.|++  ++ +.-.++|+-++.++..++.........++  ...++.|.+..+.-++.+..
T Consensus      1125 ~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLn 1190 (1702)
T KOG0915|consen 1125 KEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLN 1190 (1702)
T ss_pred             HHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHH
Confidence            22222 35566554  23 44679999999999999986543222221  23577777777766665544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.00013  Score=72.48  Aligned_cols=247  Identities=14%  Similarity=0.131  Sum_probs=154.3

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH---HHhhhhccCC---CCC
Q 009636          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGK---PQP  236 (530)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~---~~L~~L~~~~---~~~  236 (530)
                      .|+.+..+.+..++.+|+.+|..|.... ...+.     .....++++ .+.+..++..|+   |.++|.+-..   ...
T Consensus       202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  202 GLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            3666666677777777777776665422 22222     344556777 777888888874   5555555321   112


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC-
Q 009636          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-  315 (530)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~-  315 (530)
                      .......++..+...+..-.-.|+..+..+|+.+...+++.+...++..++..+-.--...   -+-..+..=|-.++| 
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCc
Confidence            2233455666777777777888899999999988877777776666655544221110000   011111111111111 


Q ss_pred             ----------CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchh
Q 009636          316 ----------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD  385 (530)
Q Consensus       316 ----------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  385 (530)
                                .++....++.+|.-..++.-|.++ -.+||+.|...++.++...|....     ..+..|++++.+....
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV  425 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence                      223444577888888888888877 789999999999999987665433     2467899999998899


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHH
Q 009636          386 IKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV  432 (530)
Q Consensus       386 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~  432 (530)
                      ||..|+.+|..++.+..       ++...++.++..|.+.+++++..
T Consensus       426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~  465 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREA  465 (823)
T ss_pred             HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999987542       12233444555555555555443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.09  E-value=0.0001  Score=78.05  Aligned_cols=267  Identities=15%  Similarity=0.131  Sum_probs=174.3

Q ss_pred             HHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC---Chh
Q 009636           75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG---TSE  150 (530)
Q Consensus        75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~---~~~  150 (530)
                      ++.+...++. ...+.+..|+..|..+......+    ..-..++|.++.++.++. ..+|..|+..|+.+...   -+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----VKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----HHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4555555554 45677888999988886543211    122457999999999998 99999999999887762   233


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC------------------chh-----------hhhHhhc
Q 009636          151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS------------------PRC-----------RDLVLSQ  200 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~------------------~~~-----------~~~i~~~  200 (530)
                      .-..++..-++|.|-.++.+ ....++-.-+..|+.||...                  +..           ...+. .
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~  577 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-H  577 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-H
Confidence            33344555678888888877 33444544445555554211                  100           00000 0


Q ss_pred             CChHH-HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 009636          201 GGLVP-LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ  279 (530)
Q Consensus       201 ~~i~~-Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~  279 (530)
                       .+.. ...++ .++++-+++..+..+.-||....  ......-+++.|..+|...|..++......|..++..-..   
T Consensus       578 -~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---  650 (1431)
T KOG1240|consen  578 -TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---  650 (1431)
T ss_pred             -HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence             1222 23334 55566777777777777775431  1122345688899999988988888877777766532111   


Q ss_pred             HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      .-++..++|.|.+-|.+.++.+...|++++.-|+...--....+  ..+++....+|-++ +.-+|..++.+|..++.
T Consensus       651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            11344778999999999999999999999999986443222222  24677788888898 99999999999888765

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.09  E-value=0.0025  Score=62.16  Aligned_cols=215  Identities=25%  Similarity=0.332  Sum_probs=149.4

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (530)
                      ..++.+.+.+.+.+ +.++..|++.++.+..           ..+++.+..++.+.++.++..++.+|+.+-  .+    
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP----  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence            35888999999987 8999999999766554           235789999999999999999999988872  22    


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChh------------HHHHH
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE------------VLTDA  263 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~------------v~~~a  263 (530)
                           ..++.++..+..+.+..++..+.++|..+-...          .+..++..+.+....            ++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 157889999955789999999999999886543          255556666554422            33333


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchh
Q 009636          264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS  343 (530)
Q Consensus       264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  343 (530)
                      ...++.+.           +...++.+...+.+....++..+..+++.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            33333321           1134566777777777788888888888777543         23456677777777 778


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009636          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (530)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  395 (530)
                      +|..++..++.+-..           ..++.++..+...+..++..+..++.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence            888888777776432           13456666677666666666665555

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.08  E-value=0.00091  Score=67.14  Aligned_cols=265  Identities=17%  Similarity=0.130  Sum_probs=169.6

Q ss_pred             HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009636           94 TTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (530)
Q Consensus        94 ~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  164 (530)
                      +.+|+-+ +.+ ....+.++....+..|.++-         ....++.+..+|++||+|+...++..+..+++.|..+.+
T Consensus         2 L~~LRiL-sRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRIL-SRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHH-ccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            3445533 332 33444555444566666655         233348999999999999999999999999999999999


Q ss_pred             HHhhCCC-----CHHHHHHHHHHHHhhhCCCchhhhhHhhc-CChHHHHHhhc----------C------CCchhHHHHH
Q 009636          165 VKLLYSP-----SDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPLLAQLN----------G------QPKLSMLRNA  222 (530)
Q Consensus       165 ~~ll~~~-----~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-~~i~~Ll~ll~----------~------~~~~~~~~~a  222 (530)
                      +..|+..     +.++.-...++|--++...+..+..+.+. +++..++..+.          .      ..+.....-+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999875     67777778888877777777677665544 56666666552          0      1245567778


Q ss_pred             HHHhhhhccCCCCCCh----hhhhchHHHHHHhh---cCC--ChhHHHHHHHHHHHhccCChHH-----------HHHHH
Q 009636          223 TWTLSNFCRGKPQPPF----DQVSPALPALAHLI---HSN--DDEVLTDACWALSYLSDGTNDK-----------IQAVI  282 (530)
Q Consensus       223 ~~~L~~L~~~~~~~~~----~~~~~~l~~L~~ll---~~~--d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~  282 (530)
                      +.++.|+....+....    .....++..+..++   ..+  .......++.+|.++--.....           .....
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            8888998877644332    22344445555552   111  2456677777777763111111           00011


Q ss_pred             HhCcHHHHHHhhCC----C----CchhHHHHHHHHhHhhcCCchhhHHHh----------------hcCchHHHHHhhcC
Q 009636          283 EAGVFPRLAEFLMH----P----SPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSG  338 (530)
Q Consensus       283 ~~~~l~~L~~lL~~----~----~~~~~~~al~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~  338 (530)
                      ....+..|+.+|..    .    -.....+.+.+|.+++..+...+..+-                ...+-..|+.++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            22345666666543    1    135778889999999887654443332                12467788888888


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHH
Q 009636          339 NYKKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      . .+.++..++..+-.+|..+..
T Consensus       320 ~-~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  320 P-DPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             C-CchHHHHHHHHHHHHHhhhHH
Confidence            8 688888888888888765544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.0023  Score=69.90  Aligned_cols=318  Identities=17%  Similarity=0.174  Sum_probs=188.1

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh-
Q 009636          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-  193 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~-  193 (530)
                      ..+||.|.++=-+++ +.+|..-..+...+..++....+... ..++.-|+.-+.+....+|+.++.+|..|..+.+.. 
T Consensus       997 ~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen  997 KKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred             HHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence            347899998877888 89998888888888886565555544 356777888888888999999999999999776531 


Q ss_pred             -hhhHhhcCChHHHHHhhcCCCchhHHHH---HHHHhhhhccCC-----CCCChhhhhchHHHHHH-hhcCCChhHHHHH
Q 009636          194 -RDLVLSQGGLVPLLAQLNGQPKLSMLRN---ATWTLSNFCRGK-----PQPPFDQVSPALPALAH-LIHSNDDEVLTDA  263 (530)
Q Consensus       194 -~~~i~~~~~i~~Ll~ll~~~~~~~~~~~---a~~~L~~L~~~~-----~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a  263 (530)
                       .+.+.+  ....+.+.. ++-.+.++..   ++.+++.+|-..     +.........++|.|+. -+-+.-++++.-+
T Consensus      1075 ~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1075 VKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred             HHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence             122211  233333333 4444555554   455666655433     11222334455555442 2225568899999


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHH-HHHHH----------Hh-HhhcCCchh--hHHH------
Q 009636          264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI-PALRT----------VG-NIVTGDDMQ--TQCV------  323 (530)
Q Consensus       264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~-~al~~----------L~-nl~~~~~~~--~~~~------  323 (530)
                      +.++..++......+.... ..+++.|+...+.-++.+.- -+++.          +. +.+.+++..  ....      
T Consensus      1152 i~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~ 1230 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDI 1230 (1702)
T ss_pred             HHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH
Confidence            9999999977665444332 25667777776665554332 22222          21 122222211  0111      


Q ss_pred             -hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009636          324 -IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       324 -~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~  402 (530)
                       +-...+|.+.++++.+-.-..|..++..++-++........... -.++..++..+.+.+..+++.-+.|.+.++....
T Consensus      1231 ~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1231 SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred             HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence             11246677777777654445566666666666542111110010 1246667777777889999999999999999888


Q ss_pred             HHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          403 HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       403 ~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      +++.+.+++.    .+..++...++ ....++..+.+|..+.
T Consensus      1310 ~dq~qKLie~----~l~~~l~k~es-~~siscatis~Ian~s 1346 (1702)
T KOG0915|consen 1310 PDQMQKLIET----LLADLLGKDES-LKSISCATISNIANYS 1346 (1702)
T ss_pred             hHHHHHHHHH----HHHHHhccCCC-ccchhHHHHHHHHHhh
Confidence            8888776542    23333333222 2244555555555444

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.01  Score=62.45  Aligned_cols=340  Identities=16%  Similarity=0.138  Sum_probs=198.0

Q ss_pred             HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc------CCC-CHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHH
Q 009636           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL------RED-YPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPI  163 (530)
Q Consensus        93 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~------~~~-~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~  163 (530)
                      |...+..+++..+....     .++++.+++.+.      .++ ++.-+.-|+++++++++--  +...+...+.=+++.
T Consensus       392 a~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h  466 (1010)
T KOG1991|consen  392 ALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH  466 (1010)
T ss_pred             HHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence            55555555544322222     356777777777      222 4667778888888888510  111112222234556


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hh
Q 009636          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQ  240 (530)
Q Consensus       164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~  240 (530)
                      +.-.++++.--+|..|+|.++.++...-  .+...-..++....+.+..+.+-.++-.|+.+|..+..+.+....   ..
T Consensus       467 VfP~f~s~~g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h  544 (1010)
T KOG1991|consen  467 VFPEFQSPYGYLRARACWVLSQFSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH  544 (1010)
T ss_pred             hhHhhcCchhHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence            6666778888899999999999984332  222222335666677775678889999999999999888744322   33


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC---CC---chhHHHHHHHHhHhh
Q 009636          241 VSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH---PS---PSVLIPALRTVGNIV  313 (530)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~---~~~~~~al~~L~nl~  313 (530)
                      +.+.+..|+++.+..+.+....++..+ +..++.-......+.. .+.....+++..   .+   .+-...|.++|..+.
T Consensus       545 vp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~  623 (1010)
T KOG1991|consen  545 VPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS  623 (1010)
T ss_pred             hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence            456666677777766666555555544 3333221111111222 344555666653   22   222333444443332


Q ss_pred             c---CCchh--hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636          314 T---GDDMQ--TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       314 ~---~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      +   .-+..  .-.-++..+++.+-.+|++. -.++-.+++-.+.+++...++....++  |+++.+.+.+.....+.-.
T Consensus       624 Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~  700 (1010)
T KOG1991|consen  624 TILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFT  700 (1010)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHH
Confidence            2   11111  11223456778888888887 778888999888888775544444444  3788888888888888889


Q ss_pred             HHHHHHHHhhcCCCHHHHHHH-HHcCChHHHHhccCC---CChHHHHHHHHHHHHHHHhh
Q 009636          389 EAAWAISNATSGGTHEQIKFL-VIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l-~~~~~i~~L~~lL~~---~~~~~~~~al~~l~~ll~~~  444 (530)
                      ...-+|.|++..+.+.....- .-.-++..+..++.+   .|.++ ..+++.+..++-.+
T Consensus       701 d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL~~  759 (1010)
T KOG1991|consen  701 DMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDC-ESACKLLEVIILNC  759 (1010)
T ss_pred             HHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHHHh
Confidence            999999999987765332221 111123334444544   23343 34666666665433

>PF05536 Neurochondrin: Neurochondrin

Probab=98.02  E-value=0.00075  Score=69.28  Aligned_cols=235  Identities=19%  Similarity=0.178  Sum_probs=159.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcC------CCchhHHHHHHHHhhhhcc
Q 009636          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNG------QPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~------~~~~~~~~~a~~~L~~L~~  231 (530)
                      +...+.+|+..+.+-+-.++..+.+++...+..   ++.+.+.=+...+-++|..      .+....+.-++.+|+.+|.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            556677888877666777777888887655532   2345555456666667742      1346678888999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~  310 (530)
                      .+.........+-+|.|+..+.+.+. ++...++.+|..++..++ ..+.+++.|.++.|.+.+.+ .+.....|+.++.
T Consensus        87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~  164 (543)
T PF05536_consen   87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLLL  164 (543)
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence            66555556677889999999988776 999999999999995554 45779999999999999987 5567888999998


Q ss_pred             HhhcCCchhhHH---HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-HH----HHHHhCcHHHHHHHHhcC
Q 009636          311 NIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQ----AVIEANIIGPLVALLENA  382 (530)
Q Consensus       311 nl~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~----~l~~~~~i~~L~~ll~~~  382 (530)
                      +++.........   -.-..+++.+...+... ....+.+.|..|+.+....+.. ..    .-+-..+...+..++.+.
T Consensus       165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr  243 (543)
T PF05536_consen  165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR  243 (543)
T ss_pred             HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence            887654421100   01124566666666666 6677888899999988754211 11    111223455555666655


Q ss_pred             -chhHHHHHHHHHHHhh
Q 009636          383 -EFDIKKEAAWAISNAT  398 (530)
Q Consensus       383 -~~~v~~~a~~aL~nl~  398 (530)
                       .+.-|..++.....+.
T Consensus       244 ~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  244 LTPSQRDPALNLAASLL  260 (543)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence             4555666655555554

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=0.00031  Score=70.84  Aligned_cols=264  Identities=18%  Similarity=0.215  Sum_probs=153.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      +...|.+.|++.+++.++.-++.-|+-..-++...       .+...+-..|..++.-.-+.|..+++-+.-+... .  
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~--  483 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-Q--  483 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-H--
Confidence            44555666655554556666655554444332221       1223445555544444455555555544332221 0  


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH--HhccCC
Q 009636          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS--YLSDGT  274 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~--~l~~~~  274 (530)
                          .++.-++..-.......+.+...--++-...+.       ..+.=+.+-+++.+.|+-++.....++.  +...+.
T Consensus       484 ----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn  552 (929)
T KOG2062|consen  484 ----EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN  552 (929)
T ss_pred             ----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence                123334444333344555554433333222221       1234456667777788888777665543  332222


Q ss_pred             hHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~l-L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      .         +++..|+.. +++.+.++++.|+-+||-++..++++         ++..+.+|..++++.||.-++.+|+
T Consensus       553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG  614 (929)
T KOG2062|consen  553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG  614 (929)
T ss_pred             h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence            2         556677776 67789999999999999999877654         4667778877779999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChH
Q 009636          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR  428 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~  428 (530)
                      -.|+++...       ..+..|-.+..+...-||+.|+.++.-+....++..+...  .++.+.+.+.+..++.+
T Consensus       615 IaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  615 IACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHED  680 (929)
T ss_pred             hhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhH
Confidence            999864321       1334444555666778999999999988876543333221  24455566666555544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.01  E-value=5.8e-05  Score=69.08  Aligned_cols=186  Identities=16%  Similarity=0.214  Sum_probs=118.5

Q ss_pred             CCCCchhHHHHHHHHhHhhcCC--chhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009636          295 MHPSPSVLIPALRTVGNIVTGD--DMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN  370 (530)
Q Consensus       295 ~~~~~~~~~~al~~L~nl~~~~--~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (530)
                      .+.+|..+..++..|..++.+.  ......+..  ..++..+...+.+. ...+.+.||.++..++..........++ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            6678999999999999998876  222222221  15666777777776 7789999999999998743344444433 5


Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhc
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL  450 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~  450 (530)
                      ++|.|++.+.++...++..|..+|..++...+  ....+    .+..+.....+.++.++..++..+..++.........
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            88999999998888999999999999999764  11111    1566777889999999999999999998766511100


Q ss_pred             CCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          451 GNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       451 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                             +.....-....+.|..+..+.+++|++.|...+..|+.
T Consensus       169 -------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  169 -------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             -------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             -------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence                   01000002245677888999999999999999988764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.00  E-value=1.5e-05  Score=54.36  Aligned_cols=55  Identities=24%  Similarity=0.610  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      +.+|..|+|+|++++...++...... ..+++.|+.+|.+++..||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999888777776644 46999999999999899999999999875

...

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.98  E-value=0.00034  Score=63.66  Aligned_cols=229  Identities=15%  Similarity=0.173  Sum_probs=153.3

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhh-
Q 009636          124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLS-  199 (530)
Q Consensus       124 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~-  199 (530)
                      +++.-+ +-.+.-|+.|+.++.. .++.|...-. ...-..+..+++.  ....++...+.+++-+..... +.+.+-+ 
T Consensus       157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~  233 (432)
T COG5231         157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKM  233 (432)
T ss_pred             HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence            444444 6678889999999998 5666666543 3344566777765  457889999999988875544 4433322 


Q ss_pred             cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCC
Q 009636          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~  274 (530)
                      ...+.-++++++....+.+.+-++.++.|++...|....   .....+.+..-.+++.  .|++++.+.-..=..+....
T Consensus       234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~  313 (432)
T COG5231         234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT  313 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence            235666777776666888999999999999985433222   2223344444444432  35665554333322221111


Q ss_pred             h------------------------------HHHHHHHH--hCcHHHHHHhhCCCCch-hHHHHHHHHhHhhcCCchhhH
Q 009636          275 N------------------------------DKIQAVIE--AGVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       275 ~------------------------------~~~~~~~~--~~~l~~L~~lL~~~~~~-~~~~al~~L~nl~~~~~~~~~  321 (530)
                      .                              .+...+.+  ..++..|.++++..++. ...-||.-++.+++..|+...
T Consensus       314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~  393 (432)
T COG5231         314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA  393 (432)
T ss_pred             hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence            1                              11222222  14678888888887766 567788999999999999988


Q ss_pred             HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                      .+...|+=..++.++.++ +++|+-+|..++-.+.
T Consensus       394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i  427 (432)
T COG5231         394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence            888999999999999999 9999999998876654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.97  E-value=8.7e-05  Score=67.91  Aligned_cols=186  Identities=17%  Similarity=0.086  Sum_probs=117.2

Q ss_pred             cCCChHHHHHHHHHHHHhhcCC-CCCcHHHHHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009636           83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (530)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g  159 (530)
                      .+.+++.+..|+..|+.++.+. .......+..  ..+++.+...+.+.. ..+...|+.++..++..-....+..+ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            5688999999999999998874 1122233221  255667777777766 68899999999999874444444333 34


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-CCCh
Q 009636          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF  238 (530)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~  238 (530)
                      ++|.|+..+.++...+++.|..+|..++...+.....     .+..+.... .+.++.++..++..+..+....+ ....
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            6899999999888899999999999998765511111     133334444 78899999999998888877654 1121


Q ss_pred             h----hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636          239 D----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       239 ~----~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                      .    ....+++.+..++.+.+++++..+-.++..+...-++
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            1    2356888999999999999999998888887544333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.95  E-value=0.0006  Score=72.56  Aligned_cols=297  Identities=15%  Similarity=0.102  Sum_probs=185.8

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC----CC
Q 009636          161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQ  235 (530)
Q Consensus       161 i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~----~~  235 (530)
                      ++.+...++. .....+..|+..|..++.....   ...-..++|.++.++ .++...++..|+.+|..+...-    +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4555555554 4566778888888888754321   111223788999999 7788899999988888765433    33


Q ss_pred             CChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636          236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~  314 (530)
                      ....+..-++|.|..++.+ ....++...+.+|+.++....    .+...+.-.....+++..+..       +...  .
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse-------t~~~--~  566 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE-------TAPE--Q  566 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc-------cccc--c
Confidence            4455667788999999887 456677777777777764321    122222222222233433322       0000  0


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                      ..+...+.+ ..++-.....+|.++ ++-||+.-...|+-||.-...   .=-+.=++..|+..|++.|+.+|..-...|
T Consensus       567 ~~~~~~~~L-~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI  641 (1431)
T KOG1240|consen  567 NYNTELQAL-HHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSI  641 (1431)
T ss_pred             ccchHHHHH-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence            011122222 234445566677776 778888777777777651100   001123688999999999999988776666


Q ss_pred             HHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH
Q 009636          395 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL  474 (530)
Q Consensus       395 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l  474 (530)
                      .-++..-....    ++.++++.|..-|.+.++-|+..|+++|..|++.+--.+.        +.     ...++.+.-+
T Consensus       642 ~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~--------~v-----~~i~~~v~Pl  704 (1431)
T KOG1240|consen  642 VGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP--------AV-----KDILQDVLPL  704 (1431)
T ss_pred             cceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH--------HH-----HHHHHhhhhh
Confidence            65544221111    3446788888899999999999999999999988743221        11     2234566677


Q ss_pred             hcCCCHHHHHHHHHHHHHhCCC
Q 009636          475 QTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       475 ~~~~~~~v~~~a~~il~~~~~~  496 (530)
                      .-|||.=|+..+..+|-.....
T Consensus       705 L~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  705 LCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             eeCchHHHHHHHHHHHHHHHhh
Confidence            8999999999998888765443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.88  E-value=0.00071  Score=66.43  Aligned_cols=283  Identities=13%  Similarity=0.085  Sum_probs=152.2

Q ss_pred             hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009636           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (530)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~  160 (530)
                      ++.+....+++++++.+..+....   .....++ ..+..|-.+|+++. ...|+.|+++|..++-..|+... +.    
T Consensus       272 wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-vc----  341 (898)
T COG5240         272 WLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-VC----  341 (898)
T ss_pred             HhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-ec----
Confidence            344445678888888877765432   1111111 23666777777777 78888888888888875443221 11    


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (530)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  240 (530)
                      =+-+-.++.+.+..+...|+.+|..-  +..+.-+.++.  .++.++.-+    +......+..++..||...|......
T Consensus       342 N~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~----SD~FKiI~ida~rsLsl~Fp~k~~s~  413 (898)
T COG5240         342 NKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDM----SDGFKIIAIDALRSLSLLFPSKKLSY  413 (898)
T ss_pred             ChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhh----ccCceEEeHHHHHHHHhhCcHHHHHH
Confidence            13344455555555555555554432  22222223222  233333322    33333444455555555544333332


Q ss_pred             hhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636          241 VSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       241 ~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                          +..|...| +...-+...++..++..+....++...     .++..|..++.+...  -.-++++|+-+....+..
T Consensus       414 ----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a  482 (898)
T COG5240         414 ----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEY--HQITVRILGILGREGPRA  482 (898)
T ss_pred             ----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCC
Confidence                23333322 234566777777777777766654333     345667777766541  223344444444322211


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      ..   ....+..+..-+--+ +.-+|..|..+|+.++..-.+.   +....+...|-+++.+.|.+||..|..++.++-.
T Consensus       483 ~~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         483 KT---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             CC---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            10   011233333333334 6678999999998887632111   2223355677788999999999999999999864

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.86  E-value=5.2e-05  Score=57.61  Aligned_cols=87  Identities=29%  Similarity=0.421  Sum_probs=68.9

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       118 v~~Lv~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      +|.|++.| ++++ +.++..++++|+.+..  +         .+++.|+.+++++++.++..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 5555 9999999999995432  2         34789999999999999999999999883         


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009636          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~  227 (530)
                        ....++.|.+++.++.+..++..++++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12378889999966667777888888874

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.0051  Score=58.76  Aligned_cols=224  Identities=14%  Similarity=0.122  Sum_probs=163.7

Q ss_pred             hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCC----CCC----cHHHHHHcCCHHHHHHhhcCCC-----CHHHHHHH
Q 009636           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEA  137 (530)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~~~~g~v~~Lv~ll~~~~-----~~~i~~~a  137 (530)
                      .++.++.++.+|.+++.++-...+..+..+....    ...    -++.+++.++++.|++-+..-+     ...-.+.+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            4578999999999999999999999888876432    111    2567788999999999876533     12234566


Q ss_pred             HHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc----
Q 009636          138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----  211 (530)
Q Consensus       138 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~----  211 (530)
                      +..+-|+..-.+.....+++.|.+.-|+.-+..  +-..-...|..+|+-+..++.+.+...-...++..+++.+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            778889988888899999999888887775533  44556778888888888887777777778888999888774    


Q ss_pred             C----CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhC
Q 009636          212 G----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG  285 (530)
Q Consensus       212 ~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~  285 (530)
                      .    ....++.++...+|+.+.....+.........+....-+++. ....+..++.+|-++..+++  .....+++..
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            1    225678888888888888776666655556666665555554 55567778888888887765  5556677777


Q ss_pred             cHHHHHHhhC
Q 009636          286 VFPRLAEFLM  295 (530)
Q Consensus       286 ~l~~L~~lL~  295 (530)
                      ++..++.+.-
T Consensus       362 GLrtiF~~FM  371 (536)
T KOG2734|consen  362 GLRTIFPLFM  371 (536)
T ss_pred             hHHHHHHHHh
Confidence            7777666543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.83  E-value=0.026  Score=59.52  Aligned_cols=387  Identities=15%  Similarity=0.106  Sum_probs=225.4

Q ss_pred             HHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           75 LPVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        75 l~~l~~~l~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      +-.++..+..++. .-+..++..+.........    ..++...-+..-++.++.. +.++..++.-+++++..-..   
T Consensus       199 lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~----~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~---  270 (759)
T KOG0211|consen  199 LVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD----DAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES---  270 (759)
T ss_pred             HHHHHHHccchhhhhcchhhhhhhHHhccCCCh----HHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---
Confidence            3444555554432 2345566666655433211    3344445666666766666 99999999999999984333   


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .....++++.+.++..+....+++.|.-.+.++...-...- . ....+.+.+++.. .+.+..+........+-++..-
T Consensus       271 ~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d-~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~  347 (759)
T KOG0211|consen  271 EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-D-VVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAV  347 (759)
T ss_pred             HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-h-hhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHh
Confidence            56678899999999988888899999998888874321100 1 1222566666666 4555544444443333333221


Q ss_pred             CC-CCh----------------------------------------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636          234 PQ-PPF----------------------------------------DQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       234 ~~-~~~----------------------------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                      .. ...                                        .....++|.+-.+..+.+..++...+..+..+..
T Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p  427 (759)
T KOG0211|consen  348 GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSP  427 (759)
T ss_pred             ccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCc
Confidence            10 000                                        0001112333333333333333333322222211


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      -..  ....+ ....+.+...+++..+.++....+.+..+-...+...........++.+..+-... ...++.+..+.+
T Consensus       428 ~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~i  503 (759)
T KOG0211|consen  428 ILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYI  503 (759)
T ss_pred             cCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHH
Confidence            100  00000 02345555666667777887777777666554444444445566777777777766 778888888888


Q ss_pred             HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHH
Q 009636          353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV  432 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~  432 (530)
                      -.++....   ..+++...-+.+...+.+....+++.|+..+.-++..-..+.    .....++.++.+...++...+..
T Consensus       504 p~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~R~t  576 (759)
T KOG0211|consen  504 PQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLVRMT  576 (759)
T ss_pred             HHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccchhhH
Confidence            77765321   223333344555555666677899999999888876322121    12234666666666667788888


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009636          433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD  497 (530)
Q Consensus       433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~  497 (530)
                      .+.++..+.......         .+.     ...+..+..+..++.+.|+-.+.+.+.++-...
T Consensus       577 ~l~si~~la~v~g~e---------i~~-----~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L  627 (759)
T KOG0211|consen  577 TLFSIHELAEVLGQE---------ITC-----EDLLPVFLDLVKDPVANVRINVAKHLPKILKLL  627 (759)
T ss_pred             HHHHHHHHHHHhccH---------HHH-----HHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence            888888777655321         123     334678888999999999999988888875543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.81  E-value=0.015  Score=57.49  Aligned_cols=309  Identities=13%  Similarity=0.131  Sum_probs=174.6

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCc
Q 009636          136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (530)
Q Consensus       136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~  215 (530)
                      ..+++...+...+++.+..+     .|.|-..+++.-..+.-.++++++.++...-  ....++ ..+..|-.+| .++.
T Consensus       246 ~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL-~s~r  316 (898)
T COG5240         246 LLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFL-KSTR  316 (898)
T ss_pred             ehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHH-hcch
Confidence            34455555555555555544     3667777777667788888888888775431  111111 1455555556 7888


Q ss_pred             hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009636          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (530)
Q Consensus       216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  295 (530)
                      ...+-.|+.+|..|+...|....    -+-+-+-.++.+.+..+..+|+.+|..  .+.++.+..++.  .++.++.=++
T Consensus       317 v~~rFsA~Riln~lam~~P~kv~----vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~S  388 (898)
T COG5240         317 VVLRFSAMRILNQLAMKYPQKVS----VCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMS  388 (898)
T ss_pred             HHHHHHHHHHHHHHHhhCCceee----ecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhc
Confidence            88999999999999987654332    223345556666677777766665544  233444443332  2333333333


Q ss_pred             CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 009636          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL  375 (530)
Q Consensus       296 ~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  375 (530)
                      ++-.-+...|++.|+....   ....     ..+..|...|......+.++.+..+|+.+....|+....     ++..|
T Consensus       389 D~FKiI~ida~rsLsl~Fp---~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~L  455 (898)
T COG5240         389 DGFKIIAIDALRSLSLLFP---SKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVL  455 (898)
T ss_pred             cCceEEeHHHHHHHHhhCc---HHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHH
Confidence            3333455556666655542   2211     234556655554436778888888888887765554333     44567


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCc
Q 009636          376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDV  455 (530)
Q Consensus       376 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~  455 (530)
                      +..+.+-+  .-+-+...|+-+-..+.....    ....+..+.+-+--++.-++..|+.+|.++.-..+..        
T Consensus       456 C~fIEDce--y~~I~vrIL~iLG~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--------  521 (898)
T COG5240         456 CTFIEDCE--YHQITVRILGILGREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--------  521 (898)
T ss_pred             HHHHhhcc--hhHHHHHHHHHhcccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--------
Confidence            77765442  333344444444333210000    0012333333333456678888888887764322211        


Q ss_pred             hhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          456 NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       456 ~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                            +.-......+..+.++.+++|+++|...++.+-
T Consensus       522 ------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         522 ------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             ------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence                  111223467788899999999999999888653

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.0087  Score=63.53  Aligned_cols=261  Identities=13%  Similarity=0.082  Sum_probs=159.4

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~  194 (530)
                      +++..|...+++.+ ..++-.|+..++.++...+...   . ..++...+.++.- .++..-..++.+|+.++...--.-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---a-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---A-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---H-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            56777888888888 7999999999999998666322   1 1345566665544 335556688889999985543222


Q ss_pred             hhHhhcCChHHHHHhhcC-------CCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHH-HHHhhcCCChhHHHHHHH
Q 009636          195 DLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPA-LAHLIHSNDDEVLTDACW  265 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~-L~~ll~~~d~~v~~~a~~  265 (530)
                      ..+.  .+++.+++-+..       +....++.+||++++.+++...... ......+.+. |...+.+.+-.++..|..
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            2222  256666665532       2356789999999999998863221 2233334443 333444566677777777


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh-hcCCCchhH
Q 009636          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNYKKSI  344 (530)
Q Consensus       266 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v  344 (530)
                      ++-........ ..     .+++ |+...+.-....+.++...++.-....+..+..+++     .++.. +.+= +..+
T Consensus       494 AlqE~VGR~~n-~p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i  560 (1133)
T KOG1943|consen  494 ALQENVGRQGN-FP-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI  560 (1133)
T ss_pred             HHHHHhccCCC-CC-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence            77554422110 00     1111 222222223334555555555555555555544443     22222 4444 8899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      |..++|+|.++....++    ......++++++...+.+...+..+..+.+.++..
T Consensus       561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~  612 (1133)
T KOG1943|consen  561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA  612 (1133)
T ss_pred             HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence            99999999998765554    33457889999988888888888777777776654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.79  E-value=0.00018  Score=55.05  Aligned_cols=94  Identities=18%  Similarity=0.338  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009636          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC  424 (530)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~  424 (530)
                      |+.+.++|+.++.+-+..+...++ .++++++..+.+.+.+||..|+.+|.|++.....+...++  ..+.+.|..++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcC
Confidence            667888888887765555555544 5899999999999999999999999999986544444433  3578899999999


Q ss_pred             CChHHHHHHHHHHHHHHH
Q 009636          425 PDPRIVTVCLEGLENILK  442 (530)
Q Consensus       425 ~~~~~~~~al~~l~~ll~  442 (530)
                      .|+.++. +.+.|.++++
T Consensus        80 ~d~~Vr~-~a~~Ld~llk   96 (97)
T PF12755_consen   80 PDENVRS-AAELLDRLLK   96 (97)
T ss_pred             CchhHHH-HHHHHHHHhc
Confidence            9999886 4577777764

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=0.0033  Score=59.99  Aligned_cols=224  Identities=16%  Similarity=0.091  Sum_probs=160.5

Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---------hHHHHHHHHhCcHHHHHHhhCCCCch------hHH
Q 009636          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAVIEAGVFPRLAEFLMHPSPS------VLI  303 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---------~~~~~~~~~~~~l~~L~~lL~~~~~~------~~~  303 (530)
                      ...-.+++.|+.+|.+.+.+|....+..+..+++.+         ...+..+++.++++.|++.+..-+.+      -..
T Consensus       121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~  200 (536)
T KOG2734|consen  121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH  200 (536)
T ss_pred             HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence            344678899999999999999999999998887432         24567788889999999988654333      355


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh--
Q 009636          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE--  380 (530)
Q Consensus       304 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--  380 (530)
                      .++..+-|++...+.....+.+.|.+.+|+.-+... .-...+..|.-+++-+...+.+....+-.-+++..+++-+.  
T Consensus       201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y  280 (536)
T KOG2734|consen  201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY  280 (536)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence            678888999988888888888999999998865433 13456777778888777766666666666677887777552  


Q ss_pred             -cC------chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 009636          381 -NA------EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT  453 (530)
Q Consensus       381 -~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~  453 (530)
                       ..      +.+.-.+...+||.+..  .+.....++...++....-++.. ....+..++.+|...+...+.       
T Consensus       281 k~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~g-------  350 (536)
T KOG2734|consen  281 KRHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEG-------  350 (536)
T ss_pred             hccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCc-------
Confidence             11      34566777788888877  45677777766666655555544 444566777777777654432       


Q ss_pred             CchhhHHHhhhhccHHHHHHH
Q 009636          454 DVNVFTQMIDDAEGLEKIESL  474 (530)
Q Consensus       454 ~~~~~~~~l~~~~~~~~l~~l  474 (530)
                        .+++..|.+.+|+..+-.+
T Consensus       351 --t~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  351 --TPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             --hHHHHHHHHHHhHHHHHHH
Confidence              2357778888888887665

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.79  E-value=0.0007  Score=65.06  Aligned_cols=177  Identities=17%  Similarity=0.138  Sum_probs=96.5

Q ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc----CCch---hhHHHhhcCch
Q 009636          257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT----GDDM---QTQCVIEYQAL  329 (530)
Q Consensus       257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~----~~~~---~~~~~~~~~~l  329 (530)
                      .-+...+++++.-+.-++..+.....-......+...+.+..-..+..+.|+++||..    +.+.   ....+.. -.+
T Consensus       405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll  483 (728)
T KOG4535|consen  405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLL  483 (728)
T ss_pred             HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHH
Confidence            3356666777666554444333333334556667777777777889999999999974    2222   2222221 122


Q ss_pred             HHHHHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-------hCcHHHHHH-HHhcCchhHHHHHHHHHHHhhc
Q 009636          330 PCLLNLLS--GNYKKSIKKEACWTVSNITAGNREQIQAVIE-------ANIIGPLVA-LLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       330 ~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------~~~i~~L~~-ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      ..++..-.  +.....|+.+|..+|+|+..    ..+.+.+       .+-+..++. ..-....+||-+||++++|+..
T Consensus       484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk  559 (728)
T KOG4535|consen  484 LKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK  559 (728)
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence            22222221  12256899999999999853    2222221       122222222 2223468999999999999998


Q ss_pred             CCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHH
Q 009636          400 GGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLE  438 (530)
Q Consensus       400 ~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~  438 (530)
                      +........=+-..+.+.|+.++. ..+-+++..|..+|.
T Consensus       560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS  599 (728)
T ss_pred             CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence            653211000011123556666654 345566666655543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.77  E-value=9.7e-05  Score=56.07  Aligned_cols=86  Identities=33%  Similarity=0.468  Sum_probs=68.8

Q ss_pred             HHHHHHhh-cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           75 LPVMVAGV-WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        75 l~~l~~~l-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      ++.|++.| .++++.++..|+++|.++-.            ..++|.|++++++++ +.++..|+++|+.+..       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence            57889988 78899999999999985421            135899999998877 9999999999998742       


Q ss_pred             HHHhCCChHHHHHhhCCC-CHHHHHHHHHHHH
Q 009636          154 VVIDHGAVPIFVKLLYSP-SDDVREQAVWALG  184 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~  184 (530)
                          ...++.|.+++.++ +..++..|+++|+
T Consensus        61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ----PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                23678899988774 5567899998885

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.77  E-value=0.022  Score=59.57  Aligned_cols=141  Identities=17%  Similarity=0.139  Sum_probs=107.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.+++.+.+.|.+++...--.+...+...  |.  .++-  +++.+.+=+++++ +.+|..|++.++.+-.  ++...
T Consensus        56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~--~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~  126 (757)
T COG5096          56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK--PE--LALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG  126 (757)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HH--HHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence            5677777777778888777777777776552  32  1111  4777788888888 9999999999987655  33332


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                           .+++.+.+++.++++.+|..|+.++.++-.-++   +.+.+.|.+..+..++ .+.++.+..+|+.+|..+...
T Consensus       127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                 357889999999999999999999999975543   3556666777676777 889999999999999998876

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.0035  Score=55.93  Aligned_cols=244  Identities=19%  Similarity=0.276  Sum_probs=135.2

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009636           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  164 (530)
                      .....++.|+-.|+++....            .+..+.+...+++ ..++.+.+.+|+....           ..+++.|
T Consensus        17 ~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l   72 (289)
T KOG0567|consen   17 QPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVL   72 (289)
T ss_pred             HHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHH
Confidence            34456777887777776431            1334444444333 4555566666655444           2345666


Q ss_pred             HHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC---------
Q 009636          165 VKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---------  233 (530)
Q Consensus       165 ~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~---------  233 (530)
                      +..+..  ..+-+|..|..+|+.+.  .+.         ..+.+-+.. +++-.++...+..++..+-...         
T Consensus        73 ~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~  140 (289)
T KOG0567|consen   73 VEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS  140 (289)
T ss_pred             HHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence            666544  34556666677776664  111         222333333 3444444444444444332221         


Q ss_pred             ------CCCChhhhhchHHHHHH-hhcCCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009636          234 ------PQPPFDQVSPALPALAH-LIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       234 ------~~~~~~~~~~~l~~L~~-ll~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a  305 (530)
                            |.+.  ....-+.-+-. ++..+.+.. +..+...|.|+.  .++.+         ..|.+-+..++.-.+..+
T Consensus       141 p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~EeaI---------~al~~~l~~~SalfrhEv  207 (289)
T KOG0567|consen  141 PYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEAI---------NALIDGLADDSALFRHEV  207 (289)
T ss_pred             ccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHHH---------HHHHHhcccchHHHHHHH
Confidence                  1111  11122333333 333333333 334555555542  22323         334455666777789999


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      ..++|.+-+.           -.++.|.+.|... .++.||.+|+.+|+-++..  +         .++.|.+.+.+.++
T Consensus       208 AfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~~D~~~  265 (289)
T KOG0567|consen  208 AFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYLGDEER  265 (289)
T ss_pred             HHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHcCCcHH
Confidence            9999988642           2366777777543 2789999999999998643  2         56777888888888


Q ss_pred             hHHHHHHHHHHHhhc
Q 009636          385 DIKKEAAWAISNATS  399 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~  399 (530)
                      -|++.+..+|.-+-.
T Consensus       266 vv~esc~valdm~ey  280 (289)
T KOG0567|consen  266 VVRESCEVALDMLEY  280 (289)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888887765543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.69  E-value=5.1e-05  Score=51.65  Aligned_cols=55  Identities=27%  Similarity=0.444  Sum_probs=46.7

Q ss_pred             chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636          299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       299 ~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                      |.++..|+++|++++...+..... ....+++.|..+|.++ ++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            468999999999998877766544 4557899999999988 789999999999976

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.62  E-value=0.036  Score=58.00  Aligned_cols=168  Identities=18%  Similarity=0.192  Sum_probs=129.3

Q ss_pred             hcCCCCHHHHHHHHH-HHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCCh
Q 009636          125 LLREDYPQLQFEAAW-ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL  203 (530)
Q Consensus       125 l~~~~~~~i~~~a~~-~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i  203 (530)
                      +.+.+ +.-+..|+. ++..++.|.+  ..     ..++.+++...+.+.+++..+-.-|.+++...|..  .++   ++
T Consensus        28 l~s~n-~~~kidAmK~iIa~M~~G~d--ms-----sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---av   94 (757)
T COG5096          28 LESSN-DYKKIDAMKKIIAQMSLGED--MS-----SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AV   94 (757)
T ss_pred             ccccC-hHHHHHHHHHHHHHHhcCCC--hH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HH
Confidence            55555 566777774 6667777554  11     23567777777888999998888888888887742  222   56


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 009636          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  283 (530)
Q Consensus       204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (530)
                      ..+.+-+ +++++.++..|+.+++.+=..      .....+++.+.+++.++++.|+..|+.|+..+-.-+.+.   +.+
T Consensus        95 Nti~kDl-~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~  164 (757)
T COG5096          95 NTIQKDL-QDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHE  164 (757)
T ss_pred             HHHHhhc-cCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhc
Confidence            7777878 889999999999998866332      455778889999999999999999999999998666543   456


Q ss_pred             hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       284 ~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~  315 (530)
                      .|.+..+..++.+.++.+...|+.++..+...
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            67888888899999999999999999888653

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.012  Score=62.38  Aligned_cols=257  Identities=14%  Similarity=0.130  Sum_probs=157.2

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh
Q 009636          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (530)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~  238 (530)
                      +++..|+..+++.+..++=.|+..++.++...|.   . +...++...+.++....+...-..+|.+|+.|+... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---E-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---H-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            5677888888888999999999999999977762   1 222366777776644445666779999999999875 2223


Q ss_pred             hhhhchHHHHHHhhcC--------CChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009636          239 DQVSPALPALAHLIHS--------NDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~--------~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L  309 (530)
                      .....++|.+.+.+.-        ....|+..+|..++.++.... .....+++.=.-..|...+-+.+-.+|..|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            3456778877776642        245688887777777765432 2223233322223344455677888898888877


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcCchhH
Q 009636          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LENAEFDI  386 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v  386 (530)
                      --.+....          -.|.=+.++.+..  .-..+.++...++--.+..+..+..+++     .|+.- +.+.|..+
T Consensus       496 qE~VGR~~----------n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~i  560 (1133)
T KOG1943|consen  496 QENVGRQG----------NFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKI  560 (1133)
T ss_pred             HHHhccCC----------CCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHH
Confidence            65543211          1111112222210  2233444444555544444544444443     22222 55568999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHH
Q 009636          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI  440 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~l  440 (530)
                      |..++++|.+++.. .+++    ...+.+++|++...+.+..++..+.-+...+
T Consensus       561 relaa~aL~~Ls~~-~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev  609 (1133)
T KOG1943|consen  561 RELAAYALHKLSLT-EPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEV  609 (1133)
T ss_pred             HHHHHHHHHHHHHh-hHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence            99999999998774 2332    4456788888888888877666554444444

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.58  E-value=0.062  Score=53.87  Aligned_cols=311  Identities=15%  Similarity=0.114  Sum_probs=176.9

Q ss_pred             HHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCCCC----cHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHH
Q 009636           75 LPVMVAGVWS-----NDSGVQYECTTQFRKLLSIERSP----PIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAW  139 (530)
Q Consensus        75 l~~l~~~l~s-----~~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~  139 (530)
                      ++.+++.+..     .+.+.....+..+.+++......    ......+..++|.+.++.....      ++.+...+..
T Consensus        40 ~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~  119 (415)
T PF12460_consen   40 SIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSR  119 (415)
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHH
Confidence            3455554442     24566677778888777653222    2344445568888887764321      1355555666


Q ss_pred             HHHHHhcCChhhHHHHHhCCChHHHHHhhC----------CCC--HHHHHHHHHHHHh-hhCCCchhhhhHhhcCChHHH
Q 009636          140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLY----------SPS--DDVREQAVWALGN-IAGDSPRCRDLVLSQGGLVPL  206 (530)
Q Consensus       140 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----------~~~--~~i~~~a~~~L~n-l~~~~~~~~~~i~~~~~i~~L  206 (530)
                      ++..+...-+...+.-+    +..+..+..          ..+  .......+..+.. +++-++.+.-. .....+..+
T Consensus       120 l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l  194 (415)
T PF12460_consen  120 LINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSL  194 (415)
T ss_pred             HHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHH
Confidence            66666653332222211    222333221          011  0112222222222 22222222111 111256677


Q ss_pred             HHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCC----ChhHHHHHHHHHHHhc-cCChHHHHH
Q 009636          207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSN----DDEVLTDACWALSYLS-DGTNDKIQA  280 (530)
Q Consensus       207 l~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~----d~~v~~~a~~~l~~l~-~~~~~~~~~  280 (530)
                      +.+.....++..+..++.+++.+...-+...  ....++..+...+ ...    ......-..|...-+. .+++.. . 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-  270 (415)
T PF12460_consen  195 LNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T-  270 (415)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-
Confidence            7777666678888888888888876632222  3344455444444 222    2334445556664444 333322 2 


Q ss_pred             HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch--------hhHHHhhc----CchHHHHHhhcCCCchhHHHHH
Q 009636          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM--------QTQCVIEY----QALPCLLNLLSGNYKKSIKKEA  348 (530)
Q Consensus       281 ~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a  348 (530)
                          .++..|+.++.+  +.+...+.+.++-+....+.        ....+...    .++|.|+...+.. +...+...
T Consensus       271 ----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~y  343 (415)
T PF12460_consen  271 ----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNY  343 (415)
T ss_pred             ----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHH
Confidence                356778888877  55778888888888765232        22223333    3566666666666 55578888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636          349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      ..+|+.+..+-|..+-.---..++|.|++.|+.++.+++..++.+|..+....
T Consensus       344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            89999999877655433323468999999999999999999999999999865

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.55  E-value=0.012  Score=52.67  Aligned_cols=256  Identities=18%  Similarity=0.224  Sum_probs=156.2

Q ss_pred             HHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          118 VPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       118 v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      +..+.+.|.... ...-++.|+..|.++...           +.+..+.+...+.+..++...+++|+.....       
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-------   66 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-------   66 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence            444555555433 123455666666666552           1255555555555556666777777765322       


Q ss_pred             HhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636          197 VLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                          ..++.++..+.. +..+-++..|..+|..+. .         ...++.+-+..+.+-..|.+.+..++..+-..+.
T Consensus        67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~  132 (289)
T KOG0567|consen   67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI  132 (289)
T ss_pred             ----hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence                267888888753 346777788999998887 2         3456677777766667777777777766642211


Q ss_pred             HHH----HHH--H------HhCcHHHHHHhhCC-CCch-hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009636          276 DKI----QAV--I------EAGVFPRLAEFLMH-PSPS-VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK  341 (530)
Q Consensus       276 ~~~----~~~--~------~~~~l~~L~~lL~~-~~~~-~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  341 (530)
                      -..    ...  +      ..+-+..+-..|.+ ..+. -+..|...|.|+..  +         ..+..|..-+..+ +
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S  200 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S  200 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence            000    000  0      00112222222222 2222 23445555555532  1         2345566677777 8


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009636          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC  419 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~  419 (530)
                      .-.|.+++++++.+-+.           -.+|.|.+.|...  ++.||.+|+.||+.++..            .+++.|.
T Consensus       201 alfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------~~~~vL~  257 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------DCVEVLK  257 (289)
T ss_pred             HHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------HHHHHHH
Confidence            88999999999998543           2567777777554  789999999999999773            2577788


Q ss_pred             hccCCCChHHHHHHHHHHHHH
Q 009636          420 DLLVCPDPRIVTVCLEGLENI  440 (530)
Q Consensus       420 ~lL~~~~~~~~~~al~~l~~l  440 (530)
                      .++..+++-+...|.-+|..+
T Consensus       258 e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  258 EYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHHH
Confidence            888888888887777666643

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.50  E-value=0.016  Score=60.43  Aligned_cols=235  Identities=16%  Similarity=0.097  Sum_probs=151.5

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCCh
Q 009636          125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL  203 (530)
Q Consensus       125 l~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i  203 (530)
                      +.....|.+-..+.|++...+.........+-  -++...+..+. +..+.++-.|+.+++-.|+-.. +..  ..-+++
T Consensus       458 l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~il  532 (1005)
T KOG2274|consen  458 LVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPMIL  532 (1005)
T ss_pred             cccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchHHH
Confidence            33333477777888988877764322222111  12333344443 3445567777777776662221 111  122356


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHHH
Q 009636          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAV  281 (530)
Q Consensus       204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~  281 (530)
                      ..|+.+. ...+.++....+.+|+..|..+|.........+.|.+..++.  ++||.+...+-.++-.++.... +.. -
T Consensus       533 d~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g-~  609 (1005)
T KOG2274|consen  533 DGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG-P  609 (1005)
T ss_pred             HHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-c
Confidence            6666666 666788899999999999999888888888888887776654  5678777666666666654221 111 1


Q ss_pred             HHhCcHHHHHHhhCCCC----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          282 IEAGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       282 ~~~~~l~~L~~lL~~~~----~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      .....+|.+++.|..+.    .....-++..|.-+.++.+.-....+-.-++|.+.++.-+..+......+.-+|..+..
T Consensus       610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            22367899999998876    45566677888878877665444445556778888777666477888888889988887


Q ss_pred             CCHHHHHHHH
Q 009636          358 GNREQIQAVI  367 (530)
Q Consensus       358 ~~~~~~~~l~  367 (530)
                      .+.++...--
T Consensus       690 ~~~eq~~t~~  699 (1005)
T KOG2274|consen  690 VTLEQLLTWH  699 (1005)
T ss_pred             cCHHHHHhhc
Confidence            6666654443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.46  E-value=0.035  Score=55.94  Aligned_cols=230  Identities=16%  Similarity=0.116  Sum_probs=144.1

Q ss_pred             cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009636           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      ...++.+..+|+++|.|++-.+ ....+.+++.|..+.+++.|+...    +.++.+-..++|.-++...+..+..+++.
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            3567889999999999999774 344556678999999999998761    37899999999999999888888887764


Q ss_pred             -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--------C
Q 009636          159 -GAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------G  212 (530)
Q Consensus       159 -g~i~~L~~ll~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------~  212 (530)
                       +++..+...|..                 .+......++.++-|+..+.+.... -.....++.++.++.        .
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence             667766665521                 1334566788899999866554322 012223444444332        2


Q ss_pred             CCchhHHHHHHHHhhhhccCCC------------CCChhhhhchHHHHHHhhc----CC----ChhHHHHHHHHHHHhcc
Q 009636          213 QPKLSMLRNATWTLSNFCRGKP------------QPPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLSD  272 (530)
Q Consensus       213 ~~~~~~~~~a~~~L~~L~~~~~------------~~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~l~~l~~  272 (530)
                      .+.......++.+|.|+-....            ..........+..|+.+|.    ..    -.+.....+.+|..++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence            2345667777888887722110            0001112334445555544    22    13567778888888887


Q ss_pred             CChHHHHHHHHh----------------CcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636          273 GTNDKIQAVIEA----------------GVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       273 ~~~~~~~~~~~~----------------~~l~~L~~lL~~~~~~~~~~al~~L~nl~~  314 (530)
                      ......+.+...                .+-.+|+.++.+..+.++..+...+-.+|.
T Consensus       280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            765443333221                344566666666666666666666665554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.051  Score=57.48  Aligned_cols=266  Identities=14%  Similarity=0.120  Sum_probs=146.9

Q ss_pred             hHHHHHHHHHHHHhhcCC-CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009636           87 SGVQYECTTQFRKLLSIE-RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV  165 (530)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  165 (530)
                      +....-|++.+..+++.- +..+.+...+.=+++.+...++++- -.+|..|||+++.++..+-..  ...-..++....
T Consensus       432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~  508 (1010)
T KOG1991|consen  432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKD--PNNLSEALELTH  508 (1010)
T ss_pred             hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHH
Confidence            333444555555444321 1233333333345666666777776 789999999999999532111  111123455666


Q ss_pred             HhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcCCCchhHHHHHHH-HhhhhccCCCCCChhhh
Q 009636          166 KLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPFDQV  241 (530)
Q Consensus       166 ~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~~~~~~~~~~a~~-~L~~L~~~~~~~~~~~~  241 (530)
                      ..|. +.+-.++-.|+.+|..+..+.+.....+..  -+.++.|+.+. +..+.+....++. .++.++..-.+......
T Consensus       509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            6666 566678888999999888776543222221  12344555555 3333333333333 33334433333334445


Q ss_pred             hchHHHHHHhhcC---CC---hhHHHHHHHHHH---Hhc---cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009636          242 SPALPALAHLIHS---ND---DEVLTDACWALS---YLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       242 ~~~l~~L~~ll~~---~d---~~v~~~a~~~l~---~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L  309 (530)
                      ..+.....+++.+   .+   .+-...|..+|.   .+.   +..++..+ -+..-+++.+-.+|++.-.++...++.++
T Consensus       588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~  666 (1010)
T KOG1991|consen  588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIV  666 (1010)
T ss_pred             HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            6666667777764   11   222222323332   222   22222222 22334455555666777677888888888


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCH
Q 009636          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNR  360 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~  360 (530)
                      ..+.....+....+  -|+++.+.+.+... ....-....-+|.|+.. |.+
T Consensus       667 ~~~t~~~~~Isp~m--W~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~  715 (1010)
T KOG1991|consen  667 SSLTFLSKEISPIM--WGLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTP  715 (1010)
T ss_pred             hhhhhhhcccCHHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCch
Confidence            77776555443333  36788888888877 67777788888998876 443

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.0015  Score=62.88  Aligned_cols=321  Identities=16%  Similarity=0.135  Sum_probs=163.1

Q ss_pred             CHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC----
Q 009636           74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG----  147 (530)
Q Consensus        74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~----  147 (530)
                      ........+.+  ....++.++++.|.-++...   ....+....+...+...+.+.. |.++..++.++..+..+    
T Consensus       254 ~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~  329 (728)
T KOG4535|consen  254 SGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQ  329 (728)
T ss_pred             chhhHHhhhcCccCCchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhh
Confidence            44455555554  23457778887777665431   1112222223344444555666 89999999988876642    


Q ss_pred             -ChhhHHHHHhCCChHHHH------H-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHH
Q 009636          148 -TSEHTKVVIDHGAVPIFV------K-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML  219 (530)
Q Consensus       148 -~~~~~~~~~~~g~i~~L~------~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~  219 (530)
                       .++..+.-...|-+-.+.      . .-.+..+..+...+.++.+|.......-.. -.....+.++.-..++.+.-+.
T Consensus       330 ~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn-~~~T~~~~Fl~GC~d~~~~lv~  408 (728)
T KOG4535|consen  330 YKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPN-DRQTLCITFLLGCNDSKNRLVK  408 (728)
T ss_pred             cCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCC-cchhhhHHHHhcccchHHHHHH
Confidence             122222211112111110      0 111223345556666666665322110000 0000111222222133344455


Q ss_pred             HHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----Ch---HHHHHHHHhCcHHHHH
Q 009636          220 RNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TN---DKIQAVIEAGVFPRLA  291 (530)
Q Consensus       220 ~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~l~~L~  291 (530)
                      ..|..++.-+.-+.. .........+...+...+.+..-..++.+.|++++++..    -+   .....+.. -.+..+.
T Consensus       409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~  487 (728)
T KOG4535|consen  409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKML  487 (728)
T ss_pred             HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHH
Confidence            666777766666642 223344556666666666666677889999999999743    11   11111111 1222222


Q ss_pred             Hhh---CCCCchhHHHHHHHHhHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636          292 EFL---MHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       292 ~lL---~~~~~~~~~~al~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                      ..-   .-.+.+++..+.++|+|+...-+.   .....+..+.+..+....-.+....||.+||.+++|+..+..-..+.
T Consensus       488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~  567 (728)
T KOG4535|consen  488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQT  567 (728)
T ss_pred             HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccC
Confidence            222   124678999999999999742210   00011111222222222222226789999999999998752110110


Q ss_pred             -HHHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcC
Q 009636          366 -VIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       366 -l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~  400 (530)
                       -+...+++.|+.++.+ .+++||..|+.+|.--...
T Consensus       568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence             1122357778877754 4899999999999766553

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.43  E-value=0.019  Score=59.89  Aligned_cols=313  Identities=12%  Similarity=0.060  Sum_probs=181.5

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009636           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  163 (530)
                      +..|.....|.+.+.++.+..  .....+. .-++...+..+..+..+.++..|+++++..++  ...... ...+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence            566777778888888776542  1111111 11344455555554446788888888887774  222111 12366778


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009636          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (530)
Q Consensus       164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  242 (530)
                      |+++....+.++....+.+|+..+..+|++... .+..+.|.++.+.. .+.|+.+...+--++-.++... ...-.+..
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence            888888788888888999999999888865443 34445555555543 5667777777777777776642 22223456


Q ss_pred             chHHHHHHhhcCCC----hhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCC
Q 009636          243 PALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       243 ~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~  316 (530)
                      .++|.++..+..++    .....-++..|..+.++.+ ...+.++. -+++.+.++. .+++......+-.||..+....
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            78999999998765    4455555666665554432 22333333 3456666654 4567778888889998888765


Q ss_pred             chhhHHHh-hcC-----chHHHHHhhcCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHhCcHHHH-HHHHhcCchh
Q 009636          317 DMQTQCVI-EYQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNIT----AGNREQIQAVIEANIIGPL-VALLENAEFD  385 (530)
Q Consensus       317 ~~~~~~~~-~~~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~~L-~~ll~~~~~~  385 (530)
                      .++...-- +.|     ++..+..+|+    ++.-..++..+|.+.    .+-+......++. ++..+ .++-......
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls  766 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS  766 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence            54432222 222     2333444443    333334444444433    3222222222221 23333 3334445678


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHH
Q 009636          386 IKKEAAWAISNATSGGTHEQIKFLV  410 (530)
Q Consensus       386 v~~~a~~aL~nl~~~~~~~~~~~l~  410 (530)
                      +-...+.+++++..........+|.
T Consensus       767 viQsLi~VfahL~~t~~~~~l~FL~  791 (1005)
T KOG2274|consen  767 VIQSLIMVFAHLVHTDLDQLLNFLS  791 (1005)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            8888888999888764333333333

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.43  E-value=0.00088  Score=51.21  Aligned_cols=68  Identities=16%  Similarity=0.341  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHhhhCCCchhhhhHhhc
Q 009636          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (530)
Q Consensus       133 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~  200 (530)
                      ++...+++|+|++..++...+.+.+.|+++.++....  ..+|-+++.|+|++.||+.++++.+..+...
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567889999999999999999999999999999864  4789999999999999999999888776543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.018  Score=59.13  Aligned_cols=261  Identities=15%  Similarity=0.161  Sum_probs=141.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh-
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD-  195 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~-  195 (530)
                      ..+.+-.++.+.. ..+..+|++++.++...++....     ..+..|--+++++...+|-.|.++|..+|.-.|..-. 
T Consensus       246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence            3455556666666 78999999999998875544332     2677888888889999999999999999976653211 


Q ss_pred             -------hHhhcC---ChHHHHHhhcCCC---chhHHHHHHHHhhhhccCCCCCChh-----------hhhchHHHHHHh
Q 009636          196 -------LVLSQG---GLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFD-----------QVSPALPALAHL  251 (530)
Q Consensus       196 -------~i~~~~---~i~~Ll~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~-----------~~~~~l~~L~~l  251 (530)
                             .+-+.+   ....+..+|+...   -..+......+.+.++.+.......           .....+..|..+
T Consensus       320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~  399 (865)
T KOG1078|consen  320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM  399 (865)
T ss_pred             cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence                   110000   1112222231111   1222333333334443332111000           112333444444


Q ss_pred             hcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009636          252 IHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (530)
Q Consensus       252 l~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~  330 (530)
                      |..+ .-+...++..++..+....++...     .++..|+.++.+..  ...-+.++|.-+....+..   ......+.
T Consensus       400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir  469 (865)
T KOG1078|consen  400 LREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIR  469 (865)
T ss_pred             HHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhH
Confidence            4432 234444555555554443222211     23445555554433  2333444444444322211   01123344


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       331 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .+.....-. +..+|..|..+|.++..+++.-     ...+.-.|.+++.+.|.++|..|..+|.++..
T Consensus       470 ~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  470 FIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             HHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence            444444445 7789999999999998654322     22355677788888899999999999998873

>PRK14707 hypothetical protein; Provisional

Probab=97.38  E-value=0.27  Score=56.42  Aligned_cols=402  Identities=16%  Similarity=0.105  Sum_probs=221.8

Q ss_pred             CHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      .+..+++.+.+  ++.+-+ .++..|...++.. ....+.+-..|+...|-.+-+-++++..+..+...-..++. .+..
T Consensus       164 ~~~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l  240 (2710)
T PRK14707        164 NISLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL  240 (2710)
T ss_pred             cHHHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence            34556665553  334344 4555555455443 23334444445444444555566656766655555455555 4544


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh-
Q 009636          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWAL-GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN-  228 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L-~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~-  228 (530)
                      +..+-..| +...+..|+. ++......++..| ..++ +.+..++.+-.. .+.-.++-|.+-.+..+.+.+...|.. 
T Consensus       241 ~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~r  317 (2710)
T PRK14707        241 RNELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAER  317 (2710)
T ss_pred             HHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence            44443333 5555666655 5554444454444 4554 444455544333 233445555566777776666655543 


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~  308 (530)
                      |.....-.......++-..|..+-+-+|..+...+..+|..=...+++..+.+-..|+-..|-.+-+.++......+...
T Consensus       318 l~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        318 LADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             HhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            44432222222223344445555555677777777766655444444444434333444444444455666666666666


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      |..-..++.+....+-..|+-..|-.+-+-+ +..+...++..|.--..++.+..+.+--.++...|-.+-+-+|..+..
T Consensus       398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            6555555666655554555555555555666 777777777777776667667665555556666666666677888888


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH-HHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhcc
Q 009636          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC-LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG  467 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a-l~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~  467 (530)
                      .++..|.-=... +++.++.|--.++...|-.+-+.++......+ .++-..+.. ...           ....|...+.
T Consensus       477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~~~-----------l~~~~~~~~~  543 (2710)
T PRK14707        477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-ELQ-----------LRKAFDAHQV  543 (2710)
T ss_pred             HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-chh-----------hhhhhhhHHH
Confidence            888777766554 44566666666777777777777776533333 333333331 111           2334444444


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          468 LEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       468 ~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ...+.-+..+++.+....+..-|...+-
T Consensus       544 ~~~lnalSKwp~s~~C~~A~~~iA~~l~  571 (2710)
T PRK14707        544 VNTLKALSKWPDKQLCAVAASGLAERLA  571 (2710)
T ss_pred             HHHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence            5566666777777777776666655443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.38  E-value=0.008  Score=61.91  Aligned_cols=224  Identities=15%  Similarity=0.125  Sum_probs=151.7

Q ss_pred             hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHh
Q 009636          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYL  270 (530)
Q Consensus       192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l  270 (530)
                      ..+...++-|+...|+.+. ....+........+|..    .-.........+++.+...+.... ..-....+.++.|+
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL  569 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNL  569 (748)
T ss_pred             HhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence            3456677888999999988 44555666666667661    111111222344555555544332 22234578889999


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh-cCchHHHHHhhcCCCchhHHHHHH
Q 009636          271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEAC  349 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~  349 (530)
                      +..++...+.+++...++.+-.++..+++..+..++..+.||..+..-....+.+ ..-++.....+... ......+++
T Consensus       570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a  648 (748)
T KOG4151|consen  570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA  648 (748)
T ss_pred             cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence            8877766677888888888888888999999999999999999877766666666 34555555566555 677777777


Q ss_pred             HHHHHHhcCCHHHHH-HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009636          350 WTVSNITAGNREQIQ-AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL  422 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL  422 (530)
                      .++..|+.-...++. ..--......+..++.+++..++...+..+.|+.. +..+....+.....+..+..+-
T Consensus       649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~~  721 (748)
T KOG4151|consen  649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGLQ  721 (748)
T ss_pred             ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHHH
Confidence            777767665555544 23334577888889999999999999999999544 4455556655555555554433

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.37  E-value=0.0021  Score=66.85  Aligned_cols=189  Identities=17%  Similarity=0.126  Sum_probs=134.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh-------------hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009636          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-------------DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (530)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~-------------~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~  227 (530)
                      ...|+.+|+.  +++-..+..++.-+..|++.++             +.+. ..++|.++..+ .......+.+-..+|+
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHHH
Confidence            3456666654  4555667777777777665432             2222 24678888888 4556677778888888


Q ss_pred             hhccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---chhHH
Q 009636          228 NFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLI  303 (530)
Q Consensus       228 ~L~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~~~~  303 (530)
                      ++..+-|.... .....++|.|++.|.-+|..++..++.++.-+....+......++ -+++.++.+-.+.+   ..+|.
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHH
Confidence            88876554332 345778899999999999999999999998777555444333333 46777777766554   56899


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       304 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                      .|+.+|..+.+.-+...-......++..|.+.|.+. ..-||++|..+=.+.
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence            999999999986665544455667889999999988 888999998765443

>PRK14707 hypothetical protein; Provisional

Probab=97.37  E-value=0.22  Score=57.14  Aligned_cols=356  Identities=18%  Similarity=0.115  Sum_probs=205.0

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C-CHHHHHHHHHHHHhhhCCCchhh
Q 009636          118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-P-SDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       118 v~~Lv~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~-~~~i~~~a~~~L~nl~~~~~~~~  194 (530)
                      +-.+++-+ +.+++.+.+..+......++. .+..+..+ +...|..++..++. + ++..+. ++..|.....+....+
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~-aa~~la~~l~~~~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGN-AVSALAERLADESRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHcCcHHHH
Confidence            33444433 334446777777766666766 34444444 34456667777766 4 444444 4455544433434455


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHh-hhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009636          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL-SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L-~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (530)
                      ..+-.. .+-..++.|.+-++......+..++ ..+..+..-.....-..+-..|..+-+-.+..+...+...|..=...
T Consensus       242 ~~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~  320 (2710)
T PRK14707        242 NELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD  320 (2710)
T ss_pred             HhCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence            444333 4555666665666665555555444 44554422211122233334444555567777777766666443333


Q ss_pred             ChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          274 TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       274 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      +.+..+.+-. -.+...+..| +.++..+...|...|.--....+...+.+--.|+-..|-.+-+-+ +..+...|+..|
T Consensus       321 d~~l~~~~~~-~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp-~~~~c~~aa~~L  398 (2710)
T PRK14707        321 DPELCKALNA-RGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWP-DTPVCAAAASAL  398 (2710)
T ss_pred             cHhhhhccch-HHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCC-CchHHHHHHHHH
Confidence            4443332222 2334444444 445555555555554444443555544433344444444445556 666777777776


Q ss_pred             HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHH
Q 009636          353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV  432 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~  432 (530)
                      ..=..++++....+-..|+-..|-.+-+-++..+...++.+|.--... +.+.++.|--.++...|-.+-+.+|..+...
T Consensus       399 A~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~  477 (2710)
T PRK14707        399 AEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQ  477 (2710)
T ss_pred             HHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHH
Confidence            665567777776666667777777777778889999998888877665 5677777766677777777888999887766


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009636          433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE  491 (530)
Q Consensus       433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~  491 (530)
                      +.+.|.-=+.....           .+.-|.-.+....|..|...++...+..|..-|-
T Consensus       478 aa~~La~~l~~~~~-----------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA  525 (2710)
T PRK14707        478 TASALAARLAHERR-----------LRKALKPQEVVIALHSLSKWPDTPICAEAASALA  525 (2710)
T ss_pred             HHHHHHHHhcccHH-----------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            66666544443322           3555666667778888888888776655544443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.36  E-value=0.00056  Score=43.09  Aligned_cols=39  Identities=38%  Similarity=0.758  Sum_probs=35.5

Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009636          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (530)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~  187 (530)
                      ++.+..+++.|+++.|+.++.++++.++..++|+|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346778889999999999999989999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.082  Score=57.14  Aligned_cols=233  Identities=11%  Similarity=0.040  Sum_probs=143.5

Q ss_pred             HHHHhhcCCCchhHHHHHHHHhhhhccCCCCC--ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009636          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (530)
Q Consensus       205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  282 (530)
                      .+.....++.+..++..+...|..++..++..  .......+...|.+-+++.+...+...+.++..+....+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            34444445568899999999999999884222  2233455666777777788888888889998888765542222344


Q ss_pred             HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC------chHHHHHhhcCCC---chhHHHHHHHHHH
Q 009636          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ------ALPCLLNLLSGNY---KKSIKKEACWTVS  353 (530)
Q Consensus       283 ~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~------~l~~L~~lL~~~~---~~~v~~~a~~~L~  353 (530)
                      ..-+.+.++.+ +..+...+..|..+|-.|+.     .+...+.|      .+..++.++..+.   ...+......++.
T Consensus       737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~  810 (1176)
T KOG1248|consen  737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAIT  810 (1176)
T ss_pred             HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence            43444444444 77788888888877777763     11111111      3444444443221   2322222234444


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009636          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  433 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a  433 (530)
                      .+..........-.-.+++..+.-.|.+..+++++.|+..+.-++..-+....... ...+++.+..+++.....++..+
T Consensus       811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kv  889 (1176)
T KOG1248|consen  811 HILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKV  889 (1176)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHH
Confidence            44332112111111234566677778888999999999999999987554443332 22467788888888788888888


Q ss_pred             HHHHHHHHHhh
Q 009636          434 LEGLENILKVG  444 (530)
Q Consensus       434 l~~l~~ll~~~  444 (530)
                      -..|..++...
T Consensus       890 r~LlekLirkf  900 (1176)
T KOG1248|consen  890 RLLLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHHHh
Confidence            88888887655

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.35  E-value=0.00057  Score=43.04  Aligned_cols=39  Identities=49%  Similarity=0.669  Sum_probs=35.1

Q ss_pred             HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      +....+++.|+++.|++++.+++++++..++|+|.|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            466778899999999999998899999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.039  Score=59.50  Aligned_cols=243  Identities=13%  Similarity=0.102  Sum_probs=149.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhH
Q 009636          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLV  197 (530)
Q Consensus       121 Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i  197 (530)
                      +.....+.++..+|..+.++|..++.. +.......+  ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            344444443489999999999999985 222222111  1233455555555566677777777777765444 222332


Q ss_pred             hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc--CC----CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR--GK----PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~--~~----~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      ..  .++.++-.+ +..+...++++..+|..++.  ..    ..+....+...++.+...+-.+........+.++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  344444444 67788899999999988882  11    12224445566666665544343333333355555554


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009636          272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (530)
                      .........-.-.++++.+..+|.++++.++..|+..+..++..-+...-......+++.+..+++.. ...+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            33222222222336778888889999999999999999999987775543333445788888888877 78888888888


Q ss_pred             HHHHhc-CCHHHHHHHHH
Q 009636          352 VSNITA-GNREQIQAVIE  368 (530)
Q Consensus       352 L~nl~~-~~~~~~~~l~~  368 (530)
                      |-.++. ...+.+..++.
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888876 34454544444

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.30  E-value=0.1  Score=56.38  Aligned_cols=143  Identities=14%  Similarity=0.199  Sum_probs=109.7

Q ss_pred             cHHHHHHhhCC----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009636          286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       286 ~l~~L~~lL~~----~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      +.|.+++..+.    ++|.++..|.-+|+.+..-+.....     .-+|.|+.++....++.+|.++..+++.++...|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            44555555533    5688999999999999876655442     45788999998554999999999999999876554


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636          362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll  441 (530)
                      .+.     ..-+.|...+.+.++.||+.|..+|.+++..+      .+.-.|.+..+..++.++++.+...|=..+.-+.
T Consensus       995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            333     24567888899999999999999999999853      2234699999999999999999987776655555


Q ss_pred             Hhh
Q 009636          442 KVG  444 (530)
Q Consensus       442 ~~~  444 (530)
                      ..+
T Consensus      1064 ~k~ 1066 (1251)
T KOG0414|consen 1064 SKG 1066 (1251)
T ss_pred             hcc
Confidence            444

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.25  E-value=0.018  Score=47.94  Aligned_cols=130  Identities=13%  Similarity=0.109  Sum_probs=103.3

Q ss_pred             HHHHHhCcHHHHHHhhCCCC------chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHH
Q 009636          279 QAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWT  351 (530)
Q Consensus       279 ~~~~~~~~l~~L~~lL~~~~------~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~  351 (530)
                      ..++..+++..|++++.++.      ..+...++.++..+.... ......+...++..+..+..... +..+...|...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45778899999999998865      366777888888887643 33345667778888988888664 67899999999


Q ss_pred             HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009636          352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL  409 (530)
Q Consensus       352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  409 (530)
                      |-+++..++.....+.+.=-++.|+..|+..+.+++..|...+..+...+++..++.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9999998777666666655699999999999999999999999999888776655543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.22  E-value=0.017  Score=50.26  Aligned_cols=93  Identities=23%  Similarity=0.241  Sum_probs=74.5

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh
Q 009636          256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (530)
Q Consensus       256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  335 (530)
                      ++.++.+++.+++.++...+....     ..++.+...|.++++.+|..|+.+|..|.....-.    .+..++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence            567899999999999876654433     56789999999999999999999999998643211    123344778888


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcC
Q 009636          336 LSGNYKKSIKKEACWTVSNITAG  358 (530)
Q Consensus       336 L~~~~~~~v~~~a~~~L~nl~~~  358 (530)
                      +.++ ++.|+..|..++..+...
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8888 999999999999999764

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.21  E-value=0.068  Score=54.25  Aligned_cols=294  Identities=13%  Similarity=0.098  Sum_probs=146.7

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh
Q 009636          120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (530)
Q Consensus       120 ~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~  199 (530)
                      .++...+ ++ +..+..|+..+.......|+....     ++..++.++.+.+..||.+|+..|..+|.+.++....   
T Consensus        27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k---   96 (556)
T PF05918_consen   27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK---   96 (556)
T ss_dssp             HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred             HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence            3444444 34 788999999999999877877664     4678999999999999999999999999988765444   


Q ss_pred             cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc---CCChhHHHHHHHHHHH-hccCCh
Q 009636          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSY-LSDGTN  275 (530)
Q Consensus       200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~~-l~~~~~  275 (530)
                        +...|+++| ...+..-...+-++|..|...++       .+.+..+...+.   +.|+.+++.++..|.. +..-..
T Consensus        97 --vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~  166 (556)
T PF05918_consen   97 --VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP  166 (556)
T ss_dssp             --HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred             --HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence              566788888 66666666677777777665543       344555555554   5678889888877643 221111


Q ss_pred             HHHH--HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----CchhhHHHhhcCchHHHHHhh------cCCCchh
Q 009636          276 DKIQ--AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQCVIEYQALPCLLNLL------SGNYKKS  343 (530)
Q Consensus       276 ~~~~--~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~~  343 (530)
                      +...  .-.+.-++..+-++|.+-...-......+|..+-..    .....+.+     ++.+....      ... +++
T Consensus       167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e  240 (556)
T PF05918_consen  167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPE  240 (556)
T ss_dssp             TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHH
T ss_pred             HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHH
Confidence            1111  112223445566666654433344444555554431    12222222     23333222      112 333


Q ss_pred             HHHHHHHHHHH----Hhc--CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH
Q 009636          344 IKKEACWTVSN----ITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP  417 (530)
Q Consensus       344 v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~  417 (530)
                      .......++..    +..  .+.....++.+ .++|.+-.+    +...+...+.++..++..+.......++ .-+...
T Consensus       241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~  314 (556)
T PF05918_consen  241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQL  314 (556)
T ss_dssp             HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHH
Confidence            32222222222    122  23333333333 466655554    4577888889999888866433233322 112333


Q ss_pred             HHhccCC--CChH----HHHHHHHHHHHHHHhhh
Q 009636          418 LCDLLVC--PDPR----IVTVCLEGLENILKVGE  445 (530)
Q Consensus       418 L~~lL~~--~~~~----~~~~al~~l~~ll~~~~  445 (530)
                      |..++-.  ..++    .++..+.++..|....+
T Consensus       315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p  348 (556)
T PF05918_consen  315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP  348 (556)
T ss_dssp             HHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred             HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence            3333322  2333    55566666666665544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.19  E-value=0.017  Score=50.25  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC-ChHHHHHh
Q 009636          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQ  209 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~-~i~~Ll~l  209 (530)
                      |.+|..++.+++.++...+...+     ..++.+...|.++++.+|.+|+.+|..|...+.     +.-.| .+..++.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence            78999999999999986555443     347899999999999999999999999975432     12223 33677788


Q ss_pred             hcCCCchhHHHHHHHHhhhhccCC
Q 009636          210 LNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      + .+++++++..|..++..+....
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc
Confidence            8 8889999999999999998873

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.19  E-value=0.0034  Score=48.06  Aligned_cols=93  Identities=15%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009636          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (530)
Q Consensus       302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  381 (530)
                      +..++.+|+.++.+-.......+ ..+++.++..+.++ +..||..||.+|.|++......+-..+ ..+++.|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            45567777777665554433332 36889999999999 999999999999999874333322222 3588999999999


Q ss_pred             CchhHHHHHHHHHHHhh
Q 009636          382 AEFDIKKEAAWAISNAT  398 (530)
Q Consensus       382 ~~~~v~~~a~~aL~nl~  398 (530)
                      .++.||..| ..|-++.
T Consensus        80 ~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CchhHHHHH-HHHHHHh
Confidence            999998876 5555543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.17  E-value=0.067  Score=51.27  Aligned_cols=202  Identities=11%  Similarity=0.085  Sum_probs=146.6

Q ss_pred             HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh-----hHHHhh--cCchHHHHHhhcCCCchhHHHHHHHH
Q 009636          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ-----TQCVIE--YQALPCLLNLLSGNYKKSIKKEACWT  351 (530)
Q Consensus       279 ~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~-----~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (530)
                      +.+...+++..|+..|..-+.+.+..+..+++++.......     .+.+..  ..++..|+.-..   .+++--.+...
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence            44667799999999999999999999999999998765433     223332  234444444444   44555666666


Q ss_pred             HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhccCCCChH
Q 009636          352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---GCIKPLCDLLVCPDPR  428 (530)
Q Consensus       352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~i~~L~~lL~~~~~~  428 (530)
                      |..++.. +.....++....+..+.+.+..++.++...|..++..+... .+.....++..   .+...+..+|.+++.-
T Consensus       147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv  224 (335)
T PF08569_consen  147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYV  224 (335)
T ss_dssp             HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred             HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence            6666554 56677888888999999999999999999999999998776 34444444443   3467888999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       429 ~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      ++..++..|+.++....+..-        ....+.+..-+..+..|..+++..|+-.|..+..=|
T Consensus       225 tkrqslkLL~ellldr~n~~v--------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF  281 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFNV--------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF  281 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHH--------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred             eehhhHHHHHHHHHchhHHHH--------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence            999999999999977655332        356677777788888999999999999998888744

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.10  E-value=0.026  Score=53.70  Aligned_cols=192  Identities=20%  Similarity=0.227  Sum_probs=124.1

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--Ch
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS  149 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~--~~  149 (530)
                      .+...+..+.......|..++..+.+++...  ...+.+.  ...++..+.+.++.+. ..-+..|+++++-++-.  ..
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence            3677888888888999999999999998763  2233332  2456788888888887 56667777777766552  22


Q ss_pred             hhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhh---CCCchhhhhHhhcCChHHHH--Hhhc---------CC
Q 009636          150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIA---GDSPRCRDLVLSQGGLVPLL--AQLN---------GQ  213 (530)
Q Consensus       150 ~~~~~~~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~---~~~~~~~~~i~~~~~i~~Ll--~ll~---------~~  213 (530)
                      .....+++ .+.|.|.+.+...  .+.++..|+.+|+-++   +..+......++  .+..+.  ....         ..
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            33444443 4578888888763  4567777777777665   232222111111  222111  1111         12


Q ss_pred             CchhHHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636          214 PKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       214 ~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      ++..+...|+.+++-|...-+.... ......+|.|..+|.++|.+|+..|..+|.-+.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            2456888888888777766543222 345778999999999999999999988887764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.021  Score=56.43  Aligned_cols=155  Identities=17%  Similarity=0.195  Sum_probs=105.8

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~  325 (530)
                      .+.+++.+.|+-.+.....+++.--.+..       ..|++..++.. +++.+.++++.|+-+||-+|..+.        
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            45566667777777665555433211111       12667777777 777899999999999998886443        


Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009636          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ  405 (530)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  405 (530)
                       ..++..+++|..++++.||...+.+|+-.|+++..+.       .+..|-.++.+...-||+.|+.+++-+...++++.
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence             4466677788777699999999999999998754432       34556666777788899999999999988776543


Q ss_pred             HHHHHHcCChHHHHhccCCCC
Q 009636          406 IKFLVIQGCIKPLCDLLVCPD  426 (530)
Q Consensus       406 ~~~l~~~~~i~~L~~lL~~~~  426 (530)
                      ....  .++++.+.+++...+
T Consensus       657 np~v--~~I~k~f~~vI~~Kh  675 (926)
T COG5116         657 NPNV--KRIIKKFNRVIVDKH  675 (926)
T ss_pred             ChhH--HHHHHHHHHHHhhhh
Confidence            2221  234555555554443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.06  E-value=0.027  Score=53.86  Aligned_cols=202  Identities=14%  Similarity=0.132  Sum_probs=138.6

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh-----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~-----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      .+...+.+..|+..|..-+-+.+..+..+++++.......+     +.+... .-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            45556888899999988888999999999999986554332     233222 122222333334466777777777777


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCCchhHHHH
Q 009636          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~~~~a  305 (530)
                      .++.............+-.+...+..++=++..+|..++..+...........+..   .++.....+|.+++.-++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            77664333333445556667777888888999999999998776666555555544   467788889999999999999


Q ss_pred             HHHHhHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       306 l~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      +..||.+.......   ...+-+..-+..++.+|++. +..++.+|..+.--+.+
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence            99999998643322   23333556789999999998 99999999998888777

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.01  E-value=0.0021  Score=50.53  Aligned_cols=70  Identities=17%  Similarity=0.291  Sum_probs=59.4

Q ss_pred             ChHHHHhcc-CCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009636          414 CIKPLCDLL-VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~i~~L~~lL-~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~  492 (530)
                      ++..|+.+| .+.|+.++..|+.-|+.+++..+.           .+..+++.|+.+.+.+|++|+|++|+..|...+++
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-----------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk  112 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-----------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK  112 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-----------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-----------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            478888988 456888889999999999998866           37778999999999999999999999999999988


Q ss_pred             hC
Q 009636          493 YW  494 (530)
Q Consensus       493 ~~  494 (530)
                      +.
T Consensus       113 lm  114 (119)
T PF11698_consen  113 LM  114 (119)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.1  Score=53.64  Aligned_cols=326  Identities=13%  Similarity=0.095  Sum_probs=167.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      ..+-+-|+++++-++-..++.++++=    .+..   + ...+|.+...|.+.+ +-+|..|..++..|-....    .+
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckLk----E~EL---l-epl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~L  168 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKLK----EPEL---L-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----HL  168 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhcC----cHHH---h-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----hh
Confidence            55566778888888888888888762    1211   1 246899999999988 8999999998888876311    11


Q ss_pred             HhCCChHHHHHhh-CCCCHHHHHHHHHHHHhh----------------------------------hCCCchhhhhHhhc
Q 009636          156 IDHGAVPIFVKLL-YSPSDDVREQAVWALGNI----------------------------------AGDSPRCRDLVLSQ  200 (530)
Q Consensus       156 ~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl----------------------------------~~~~~~~~~~i~~~  200 (530)
                      +. .+-..+-.+| ...++..++.|...|...                                  |...|..     +.
T Consensus       169 ~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-----~~  242 (948)
T KOG1058|consen  169 IP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE-----KA  242 (948)
T ss_pred             cC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----hh
Confidence            10 1111122222 223444444444333221                                  1111110     11


Q ss_pred             CChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHH
Q 009636          201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQ  279 (530)
Q Consensus       201 ~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~  279 (530)
                      ..+..+..+| .+.+..+.-.|..+|.+++..+     .........++.++.. +|..+.--.+.-|..+......   
T Consensus       243 ~~i~~i~~lL-~stssaV~fEaa~tlv~lS~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~---  313 (948)
T KOG1058|consen  243 RYIRCIYNLL-SSTSSAVIFEAAGTLVTLSNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEK---  313 (948)
T ss_pred             HHHHHHHHHH-hcCCchhhhhhcceEEEccCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH---
Confidence            1333444444 3334444444444444444331     1111222223333221 1222211111222222211111   


Q ss_pred             HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009636          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (530)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  358 (530)
                       +. .|.+-.++.+|++++-+++..++.+.-.|++... ...-.++...+...--.  .+.+....|..-..++..++..
T Consensus       314 -il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e~d~~~~yRqlLiktih~cav~  389 (948)
T KOG1058|consen  314 -IL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--ESDDNGKYRQLLIKTIHACAVK  389 (948)
T ss_pred             -HH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--ccccchHHHHHHHHHHHHHhhc
Confidence             11 1555667788888999999999988888876433 11111111111100000  1111345677777888888776


Q ss_pred             CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHH
Q 009636          359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGL  437 (530)
Q Consensus       359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l  437 (530)
                      .++..     +.+++.|++.+.+.++......+..+...... .+..+.     ..+..|+.-+. -...++-..++|++
T Consensus       390 Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek-~p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~  458 (948)
T KOG1058|consen  390 FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEK-FPNLRA-----SIIEKLLETFPQIRSSKICRGALWIL  458 (948)
T ss_pred             ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh-CchHHH-----HHHHHHHHhhhhhcccccchhHHHHH
Confidence            66543     45788999999988877666666666665553 222222     23444444443 35667777888888


Q ss_pred             HHHHHhh
Q 009636          438 ENILKVG  444 (530)
Q Consensus       438 ~~ll~~~  444 (530)
                      +..+...
T Consensus       459 GeYce~~  465 (948)
T KOG1058|consen  459 GEYCEGL  465 (948)
T ss_pred             HHHHhhh
Confidence            7766544

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.99  E-value=0.0054  Score=46.94  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009636          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVI  367 (530)
Q Consensus       301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (530)
                      ++...+++++|++..+......+.+.|.++.++.....+ .+|-+|+.|.|++.|++.++++....+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            456789999999999998888999999999998887543 2789999999999999999888765544

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.38  Score=49.88  Aligned_cols=286  Identities=15%  Similarity=0.144  Sum_probs=160.1

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh
Q 009636          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD  239 (530)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  239 (530)
                      ..+.+-..+++....+...++.++.++....+  |...-   .+..|--++ +++...++-.|..+|..++...|.....
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l~p---avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RELAP---AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhcch---HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence            34555556666677777788888887764443  11111   343343344 7778888888888888888776543322


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                          +-.-|-.++...+-.+...+..++..  .+.+..+..+.+  -+...+.=++++..-+...|+++|++...   . 
T Consensus       320 ----cN~elE~lItd~NrsIat~AITtLLK--TG~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~fp---~-  387 (865)
T KOG1078|consen  320 ----CNLDLESLITDSNRSIATLAITTLLK--TGTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLKFP---R-  387 (865)
T ss_pred             ----cchhHHhhhcccccchhHHHHHHHHH--hcchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhhcc---H-
Confidence                12223444444455555554444432  223333332322  23333333444444455556666555432   1 


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                          ...+.+..|..+|..+..-+.++....++..+...+++...     ..+..|+..+.+-  +...-+...|.-+..
T Consensus       388 ----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~  456 (865)
T KOG1078|consen  388 ----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGK  456 (865)
T ss_pred             ----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence                12345667777776654667788888888877775554432     2455677766543  344445555555544


Q ss_pred             CCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCC
Q 009636          400 GGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN  479 (530)
Q Consensus       400 ~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  479 (530)
                      .+..    .......+..+.+.+--.+..++..++.++.++....+..           .     ......+..++++.+
T Consensus       457 EgP~----a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----------~-----~sI~vllkRc~~D~D  516 (865)
T KOG1078|consen  457 EGPK----APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----------L-----PSILVLLKRCLNDSD  516 (865)
T ss_pred             cCCC----CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----------c-----ccHHHHHHHHhcCch
Confidence            3310    0011223445555555667778888888888887322221           1     223456778888999


Q ss_pred             HHHHHHHHHHHHHhC
Q 009636          480 AEIYEKSVKLLETYW  494 (530)
Q Consensus       480 ~~v~~~a~~il~~~~  494 (530)
                      .+|+++|...+...-
T Consensus       517 devRdrAtf~l~~l~  531 (865)
T KOG1078|consen  517 DEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999888777654

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.2  Score=51.46  Aligned_cols=167  Identities=18%  Similarity=0.186  Sum_probs=106.4

Q ss_pred             HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009636          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI  367 (530)
Q Consensus       288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (530)
                      +.+-+++.+.++-+|.....+++---.+..       +.+++..|+.+--++.+.+||+.|..+|+-++..+++++    
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~----  590 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL----  590 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc----
Confidence            455566667777777766655543222221       235677777774444489999999999999999888753    


Q ss_pred             HhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636          368 EANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       368 ~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~  446 (530)
                           +..+.+|.. .++.||..++.+|+-.+.+.....        ++..|-.+..++..-+++-|+-++..++.....
T Consensus       591 -----~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~  657 (929)
T KOG2062|consen  591 -----PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE  657 (929)
T ss_pred             -----hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence                 455555544 489999999999998877643221        344444555666667899999888877754322


Q ss_pred             hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009636          447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL  490 (530)
Q Consensus       447 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il  490 (530)
                      .       .++-.     .|..+.+..+....+++.-.+--.++
T Consensus       658 ~-------~~pkv-----~~frk~l~kvI~dKhEd~~aK~GAil  689 (929)
T KOG2062|consen  658 Q-------LCPKV-----NGFRKQLEKVINDKHEDGMAKFGAIL  689 (929)
T ss_pred             c-------cCchH-----HHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            1       11112     23346677777777777554433333

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.80  E-value=0.061  Score=55.68  Aligned_cols=245  Identities=14%  Similarity=0.069  Sum_probs=156.9

Q ss_pred             HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-hhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009636          144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (530)
Q Consensus       144 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~-nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a  222 (530)
                      ++......+...++.|+...|+++.....+..+-.+..+|. .+.....  +    ....++++.+.+.......-..-+
T Consensus       489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~en~E~  562 (748)
T KOG4151|consen  489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGLENFEA  562 (748)
T ss_pred             HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHHHHHHH
Confidence            33445566667778899999999998877777777777776 3321111  1    123566666666322222223346


Q ss_pred             HHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCCCCch
Q 009636          223 TWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPS  300 (530)
Q Consensus       223 ~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~  300 (530)
                      +.++.||+....... .......++.+-.++..+++..+..++.++.||...+.-....+.+ ..-++.....+......
T Consensus       563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~  642 (748)
T KOG4151|consen  563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK  642 (748)
T ss_pred             HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence            778888887763332 3333444555666677788999999999999998776654444444 23455555556555666


Q ss_pred             hHHHHHHHHhHhhcCCchhhH-HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009636          301 VLIPALRTVGNIVTGDDMQTQ-CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL  379 (530)
Q Consensus       301 ~~~~al~~L~nl~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  379 (530)
                      ....++.++..|.......+. ..-.......+..++.++ +..++......+.|+.....+....++....++.+..+-
T Consensus       643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~  721 (748)
T KOG4151|consen  643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ  721 (748)
T ss_pred             HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence            666677777666554444443 222346778888889988 999999999999997777777777777777777776654


Q ss_pred             hcCchhHHHHHHHHHH
Q 009636          380 ENAEFDIKKEAAWAIS  395 (530)
Q Consensus       380 ~~~~~~v~~~a~~aL~  395 (530)
                      .......++.+..+|.
T Consensus       722 ~~~~a~~~~~~~~~l~  737 (748)
T KOG4151|consen  722 KLNRAPKREDAAPCLS  737 (748)
T ss_pred             HhhhhhhhhhhhhHHH
Confidence            4433344444444443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.79  E-value=0.052  Score=45.23  Aligned_cols=127  Identities=13%  Similarity=0.103  Sum_probs=97.6

Q ss_pred             hhhhHhhcCChHHHHHhhcCCCc-----hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHH
Q 009636          193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACW  265 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~  265 (530)
                      +...+++.+++..|++++.+...     .++...++.++..|....--.-......++..++..+...  |..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            45667888999999999965443     5788889999999988752222233455666666666543  7889999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       266 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                      .|-+++.+++...+.+.+.=-++.|+..|...+..++..|+..+..+....++.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            999999988877776666666899999999999999999999988887665543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.75  E-value=0.014  Score=60.94  Aligned_cols=193  Identities=18%  Similarity=0.138  Sum_probs=130.8

Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC--------CC-----hhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 009636          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--------PP-----FDQVSPALPALAHLIHSNDDEVLTDACWALS  268 (530)
Q Consensus       202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~--------~~-----~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~  268 (530)
                      +...++.+|.   ++++-..+..+++-+..+.+.        ..     ......++|.++..+.+.+......-+.+|.
T Consensus       816 ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  816 IAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence            3445666662   234444555555555544311        01     1233678999999998778888888888888


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc--hhHHH
Q 009636          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSIKK  346 (530)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~~v~~  346 (530)
                      ++..+-+..+-.---..++|.|++.|+-++..++..++.++.-+....+.....-+ ..++|.++.+-.+...  ..+|.
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHH
Confidence            88776554211111236788999999999999999999999888765554432222 3567777777766622  57899


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636          347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                      .|..+|..++...|...-......++..|+..|++....||++|..+=.+..
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            9999999999844443334445568889999999888899999987755543

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.72  E-value=0.53  Score=44.89  Aligned_cols=195  Identities=13%  Similarity=0.132  Sum_probs=122.5

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC--CchhhHH
Q 009636          247 ALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG--DDMQTQC  322 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~--~~~~~~~  322 (530)
                      ..+..+.......++.++..+..+.....  +.+. -....+++.+.+.++.+...-+..|+++++-++-.  .......
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~-~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVE-DRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            34444455568888999888888764322  2211 11224677888888888776777787877777543  2233444


Q ss_pred             HhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHH--Hhc----------CchhH
Q 009636          323 VIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVAL--LEN----------AEFDI  386 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~l--l~~----------~~~~v  386 (530)
                      +++ .+.|.|...+.+.. ...+|..++.+|+-++.   ..++.....++  .+..+...  .+.          +++.+
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            444 57788888888762 34566666666666543   34444432222  22211111  111          13568


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      ...|+.+.+-++...+.......+ ...++.|..+|++.+.+|+..|-++|.-++.....
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            888888888887765554444433 34589999999999999999999999999877653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.71  E-value=0.12  Score=45.95  Aligned_cols=144  Identities=13%  Similarity=0.153  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChH
Q 009636           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVP  162 (530)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~  162 (530)
                      .-...|+..+..++|.  .+....+.+..+--.|..+|...+    ..-+|..++.+++.+...+ .+....+...+++|
T Consensus        94 nRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   94 NRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             chHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            3445677777777766  566777777775556667776543    4678999999999999844 56666777899999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-------CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-------~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      ..++.+...++..+..|..++..|..++......+...       ..+..++..+.+.++..+.+.++.+..+|+.+.
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999999998876543322211       133344444446778889999999999998874

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.31  Score=50.22  Aligned_cols=279  Identities=17%  Similarity=0.116  Sum_probs=157.2

Q ss_pred             cCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHh
Q 009636          115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN  185 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~n  185 (530)
                      .|+++.++..|...       +++.-.+-|++.+.++..  ........+.+.=+++.++..++++.--++..|+..++.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            58899999988421       123445667777777665  223333344444556777777788888899999999999


Q ss_pred             hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh---hhchHHHHHHhhcCCChhHHHH
Q 009636          186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ---VSPALPALAHLIHSNDDEVLTD  262 (530)
Q Consensus       186 l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~---~~~~l~~L~~ll~~~d~~v~~~  262 (530)
                      +..+-   ++...-..+.+...+++ .+.+-.++-.|+.++..+..+. ......   +.+.++.|+.+-..-+.++...
T Consensus       487 ~eeDf---kd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         487 IEEDF---KDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHhc---ccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence            85443   33333344566677777 5577788888888888888775 222222   2334444444444445555555


Q ss_pred             HHHHH-HHhccCC----hHHHHHHHHhCcHHHHHHhhCCCC------chhHHHHHHHHhHhhc---C--CchhhHHHhhc
Q 009636          263 ACWAL-SYLSDGT----NDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT---G--DDMQTQCVIEY  326 (530)
Q Consensus       263 a~~~l-~~l~~~~----~~~~~~~~~~~~l~~L~~lL~~~~------~~~~~~al~~L~nl~~---~--~~~~~~~~~~~  326 (530)
                      ++..+ .+.++.-    .+....++. .++.....++.+++      .+-+..|.++|..+.+   .  +....-.-+..
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~  640 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV  640 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            55444 2222221    111111111 22223333333321      1234445544444432   1  11111112344


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCc-hhHHHHHHHHHHHhhcCCC
Q 009636          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~nl~~~~~  402 (530)
                      ...|.+--+|++. ..++-.+|+-.+-+.+-...+.-.  +.-|+.+.+.+++.+.. ...-.++.-++.|+...|.
T Consensus       641 slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         641 SLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             HHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence            5667777777777 777888888888777654322221  11245666666666554 3677888999999988763

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.68  E-value=0.26  Score=50.18  Aligned_cols=131  Identities=16%  Similarity=0.170  Sum_probs=87.5

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009636          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (530)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  242 (530)
                      .++...+ .+...+..|+..|.....+-|...+.     ++..+++++ .+.+..++..|+..|..+|.+.+    ..+.
T Consensus        27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~   95 (556)
T PF05918_consen   27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVS   95 (556)
T ss_dssp             HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred             HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHh
Confidence            4555554 46889999999999999998887666     688899999 78899999999999999998843    3457


Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC---CCCchhHHHHHHHHhHh
Q 009636          243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNI  312 (530)
Q Consensus       243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~~~~al~~L~nl  312 (530)
                      .+..+|+++|.++++.-...+=++|..+...++.        +.+..+...+.   .++..+++.++..|..-
T Consensus        96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k  160 (556)
T PF05918_consen   96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK  160 (556)
T ss_dssp             HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence            7888999999998877666666677666544432        22233333332   46677899988777443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.67  E-value=0.0052  Score=48.33  Aligned_cols=73  Identities=14%  Similarity=0.202  Sum_probs=61.6

Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .++..|+.+|..+.++.+...||.-|+.++...|..+..+-+.|+-..+++++.++|++||.+|+.|+..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4688899999655488888999999999999878887777788999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.63  E-value=0.21  Score=45.24  Aligned_cols=187  Identities=13%  Similarity=0.142  Sum_probs=118.7

Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------hCCCC--c---hhHHHHHHHHhHhhcCCchhhH
Q 009636          255 NDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEF-------LMHPS--P---SVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~l-------L~~~~--~---~~~~~al~~L~nl~~~~~~~~~  321 (530)
                      .+++.++.|+.-|+.--+..++..-.+.. .|.+..|++=       +..++  .   .-...|+..+-.++. +++.+.
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~   85 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM   85 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence            35667777777666655544444333332 3555544332       23222  1   223445555666666 566667


Q ss_pred             HHhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHH
Q 009636          322 CVIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN  396 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n  396 (530)
                      .++++++.-.|..+|+...    -+.+|-.+..+++.+.. ++++.+..+.+.+++|..++.++.++.-.|..|...+..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            8889998888888886542    24688889999999987 678889999999999999999999998999999999999


Q ss_pred             hhcCCCHHHHHHHHHc--------CChHHHH-hccCCCChHHHHHHHHHHHHHHHhh
Q 009636          397 ATSGGTHEQIKFLVIQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       397 l~~~~~~~~~~~l~~~--------~~i~~L~-~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      +...  .....++.+.        .++..++ .+.+.+++.+...++.+...+....
T Consensus       166 IL~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  166 ILLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            8873  3444444321        1233332 2345678888888888877776544

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.56  E-value=1.9  Score=48.50  Aligned_cols=257  Identities=15%  Similarity=0.115  Sum_probs=138.5

Q ss_pred             hHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--
Q 009636          217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--  294 (530)
Q Consensus       217 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL--  294 (530)
                      .+..+.+..+....---+.+...+...+=..|.+++-..+......|..|++.++..-......+.  .++....+.|  
T Consensus      1095 ~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~--~cf~~~~k~le~ 1172 (1692)
T KOG1020|consen 1095 QFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVK--ACFSCYLKLLEV 1172 (1692)
T ss_pred             HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHH
Confidence            344444444443333333444444455555556655555556666777777777653111111111  1222333322  


Q ss_pred             -CCC--------CchhHHHHHHHHhHhhcCCch-----------hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          295 -MHP--------SPSVLIPALRTVGNIVTGDDM-----------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       295 -~~~--------~~~~~~~al~~L~nl~~~~~~-----------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                       ++.        ........+.++|-++++-+.           +....+..+++..|.-..++. +..+|..|...++.
T Consensus      1173 ~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~ 1251 (1692)
T KOG1020|consen 1173 IKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGF 1251 (1692)
T ss_pred             HHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHH
Confidence             222        224566788889988873221           111234556777777777777 88999999999999


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH--HHHHHHHHHHhhcCC---------------CHHHHHHHH-------
Q 009636          355 ITAGNREQIQAVIEANIIGPLVALLENAEFDI--KKEAAWAISNATSGG---------------THEQIKFLV-------  410 (530)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v--~~~a~~aL~nl~~~~---------------~~~~~~~l~-------  410 (530)
                      +|...+..   +....+...+...+.+.+...  +..++..+.-+....               ..+..+.+.       
T Consensus      1252 ~ci~hp~l---~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~ 1328 (1692)
T KOG1020|consen 1252 ICIQHPSL---FTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMG 1328 (1692)
T ss_pred             HHhhCchh---hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccc
Confidence            99855442   333334444444554442221  233332222222100               112222221       


Q ss_pred             HcCC--------hHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHH
Q 009636          411 IQGC--------IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI  482 (530)
Q Consensus       411 ~~~~--------i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v  482 (530)
                      ..|+        ++.+++..-+.|..++..|+..+..++..|--         +|       --.+..|..|..++.+.+
T Consensus      1329 s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLV---------hP-------~~cvPtLIAL~Tdp~~~~ 1392 (1692)
T KOG1020|consen 1329 SSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLV---------HP-------VHCVPTLIALETDPSQAI 1392 (1692)
T ss_pred             cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCC---------Cc-------cchhhhheeecCChHHHH
Confidence            1111        22233333357788899999999888877632         22       123678888888899999


Q ss_pred             HHHHHHHHHHhCC
Q 009636          483 YEKSVKLLETYWL  495 (530)
Q Consensus       483 ~~~a~~il~~~~~  495 (530)
                      +++|..++...+.
T Consensus      1393 r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1393 RHVADELLKEIDE 1405 (1692)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988887654

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.14  Score=50.19  Aligned_cols=148  Identities=12%  Similarity=0.207  Sum_probs=95.7

Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHH-HHhcCchhHHHHHHHHHHHhhcCCCHHHHH-HHHHcC
Q 009636          336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA-LLENAEFDIKKEAAWAISNATSGGTHEQIK-FLVIQG  413 (530)
Q Consensus       336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~-ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~-~l~~~~  413 (530)
                      ..++ +..+|..|+..|+|.+.+.|+.+...... ++..++. +.+..+.+|..++..+|..+.......... +++  .
T Consensus       267 a~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l--~  342 (533)
T KOG2032|consen  267 ATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL--N  342 (533)
T ss_pred             ccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--h
Confidence            3445 66899999999999999866665554443 3444444 444457899999999999887754333322 221  2


Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      +...+..+.++.+++++..+...++.+.++.....      ...|.+.+.  ++...+.--.+++++.+...+...+...
T Consensus       343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~------e~~Fte~v~--k~~~~lllhl~d~~p~va~ACr~~~~~c  414 (533)
T KOG2032|consen  343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW------EEFFTEQVK--KRLAPLLLHLQDPNPYVARACRSELRTC  414 (533)
T ss_pred             HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc------hhhhHHHHH--hccccceeeeCCCChHHHHHHHHHHHhc
Confidence            34456778889999999999999999987664422      112333222  2223333335678888877777766654


Q ss_pred             CC
Q 009636          494 WL  495 (530)
Q Consensus       494 ~~  495 (530)
                      ++
T Consensus       415 ~p  416 (533)
T KOG2032|consen  415 YP  416 (533)
T ss_pred             Cc
Confidence            43

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.50  E-value=2.1  Score=48.19  Aligned_cols=144  Identities=9%  Similarity=0.048  Sum_probs=98.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..++..+..+-..++-.|+++|..++.....--....++.+    +-.-+.++. ..+|..|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            4566666777777899999999999998764211122333333    333333444 78999999999988776666655


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--CCCchhHHHHHHHHhhhhcc
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--GQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ...     ..+..-+.++...+|..++..+..+|...|.+-..      +..+.+++.  .+....++.-++.++.++-.
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            543     34555566678899999999999999888765332      233344443  34444588999999998887


Q ss_pred             CC
Q 009636          232 GK  233 (530)
Q Consensus       232 ~~  233 (530)
                      .+
T Consensus       961 ~p  962 (1692)
T KOG1020|consen  961 TP  962 (1692)
T ss_pred             cC
Confidence            75

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.49  E-value=1.2  Score=45.38  Aligned_cols=287  Identities=13%  Similarity=0.100  Sum_probs=155.2

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009636           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (530)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  166 (530)
                      -..+..|+..++..+..-+...+..     +....-.++.....++.|..+...|..++...........     ..+.+
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence            3467788888888776643323332     2333345666555578899999999888885443211111     11222


Q ss_pred             hhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--------------------------CCchhHH
Q 009636          167 LLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------------------QPKLSML  219 (530)
Q Consensus       167 ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--------------------------~~~~~~~  219 (530)
                      .+. ...++....-+.+|..|+.++...  ...+.++.+.|...+..                          +.+....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            222 233433445556666666555443  12355566666655521                          0123334


Q ss_pred             HHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhh
Q 009636          220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFL  294 (530)
Q Consensus       220 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL  294 (530)
                      ...+..+.++.... .........+++..+..+.. +..+.....++..+-.+...   +.+...     .++..|....
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~  226 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV  226 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence            44555555655554 33334445555555555533 33344444444444333322   222211     2333444442


Q ss_pred             CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 009636          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQIQAVIE-  368 (530)
Q Consensus       295 ~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-  368 (530)
                      .  ..+....+-.++.||+...-.+       ..+..|..+|..+     .+..+.+-|...+..+..+..+....-+. 
T Consensus       227 ~--~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~  297 (464)
T PF11864_consen  227 N--SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF  297 (464)
T ss_pred             c--ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence            2  2256777888888888643322       2356677777322     13456677888888877655222222121 


Q ss_pred             h--CcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          369 A--NIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       369 ~--~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .  -+++.|...++..+..+-.+++..+.++..
T Consensus       298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            2  278888999998888888888888888884

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.47  E-value=0.35  Score=46.10  Aligned_cols=171  Identities=16%  Similarity=0.119  Sum_probs=110.1

Q ss_pred             CCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-Cchh
Q 009636          116 GVVPRFV-EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRC  193 (530)
Q Consensus       116 g~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~  193 (530)
                      +++..|+ ..+++.+ +.+|..|+.||+-.+--+.+....     .++.+.+.++..+..++..|+.++..+... +...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4455554 6777887 899999999999999866544433     356777777667899999999999988732 2111


Q ss_pred             hhh-------HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC----CChhHHHH
Q 009636          194 RDL-------VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTD  262 (530)
Q Consensus       194 ~~~-------i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~  262 (530)
                      -+.       ......+..+.+.+ .+.+++++..++..++.|........   ...++..|+-+..+    ++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            111       11233555666667 56688999999999999887753333   23334443333322    24566666


Q ss_pred             HHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC
Q 009636          263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP  297 (530)
Q Consensus       263 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  297 (530)
                      ....+-..+.....+. ..+...+++.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence            6666666666665553 455556777777766553

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.40  E-value=0.89  Score=48.81  Aligned_cols=239  Identities=17%  Similarity=0.179  Sum_probs=137.3

Q ss_pred             hchHHHHHHhhcC-----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC----CCC----chhHHHHHHH
Q 009636          242 SPALPALAHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----HPS----PSVLIPALRT  308 (530)
Q Consensus       242 ~~~l~~L~~ll~~-----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~----~~~~~~al~~  308 (530)
                      .+++..++.++.+     .+.+....++..+.+++.- ..+.+.+++.+.++.|+..+.    .+.    ..+.+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            3455555555543     2345666667777776655 445677888999999888874    333    5666777777


Q ss_pred             HhHhhcCCchhhHHH----h--------hcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009636          309 VGNIVTGDDMQTQCV----I--------EYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (530)
Q Consensus       309 L~nl~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (530)
                      +..+...........    .        +...+..|+..+.+..   ++.+....+.+|.+++.++++..+.+++  .+.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence            766654222110000    0        1123666666666542   5788899999999999999998888876  233


Q ss_pred             HHHHHHhcC--chhHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhccCCCC--------hH--------HH
Q 009636          374 PLVALLENA--EFDIKKEAAWAISNATSGG-----THEQIKFLVIQGCIKPLCDLLVCPD--------PR--------IV  430 (530)
Q Consensus       374 ~L~~ll~~~--~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~i~~L~~lL~~~~--------~~--------~~  430 (530)
                      +.+++=.-+  ...--...+.+++.++.+-     .......+++.|++...+++|...-        ++        -+
T Consensus       273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            333322111  1010122355666665432     2356677788999988877774322        21        12


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHHhCC
Q 009636          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ..++..|.-+....+.            .+.+...+++..+..| +.+....|-..|.++|+.+-+
T Consensus       353 p~iL~lL~GLa~gh~~------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  353 PYILRLLRGLARGHEP------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHHhcCHH------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            2344444444443332            2222335566666666 344467777788887776544

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.40  E-value=0.096  Score=56.56  Aligned_cols=147  Identities=18%  Similarity=0.184  Sum_probs=115.3

Q ss_pred             hhhchHHHHHHhhc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhc
Q 009636          240 QVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       240 ~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~  314 (530)
                      ....+.|.++...+    .+||+++..|.-+++.+..-+..    +++ .-++.|+..+. ++++.++.++.-++|.++-
T Consensus       916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDlav  990 (1251)
T KOG0414|consen  916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV  990 (1251)
T ss_pred             HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence            34567788888874    45799999999999988755433    222 45688888887 6889999999999999987


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                      ..+...+     ..-+.|...|.+. ++.+|+.|..+|++|...+.     +--.|.+..+..++.+++.+++.-|-..+
T Consensus       991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen  991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred             hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence            6664432     3456788889988 99999999999999976542     22368999999999999999999999888


Q ss_pred             HHhhcCCC
Q 009636          395 SNATSGGT  402 (530)
Q Consensus       395 ~nl~~~~~  402 (530)
                      ..++..++
T Consensus      1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred             HHhhhccc
Confidence            88877664

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.36  E-value=0.37  Score=45.96  Aligned_cols=172  Identities=16%  Similarity=0.134  Sum_probs=114.9

Q ss_pred             hchHHHH-HHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch-h
Q 009636          242 SPALPAL-AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-Q  319 (530)
Q Consensus       242 ~~~l~~L-~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~-~  319 (530)
                      .+++..| .+.+.+.++.++..++.+++-.+--+.....     ..++.+...+..++..++..|+.++..+...... .
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3566544 4788899999999999999988865543322     3456677777778889999999999998753321 1


Q ss_pred             hHH-------HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc----CchhHHH
Q 009636          320 TQC-------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN----AEFDIKK  388 (530)
Q Consensus       320 ~~~-------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~----~~~~v~~  388 (530)
                      ...       .-...++..+.+.+.+. +++++..|+-.++.+.....-.-    ...++..|+-+.-+    ++..+|+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ  174 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ  174 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence            111       11246788899999998 99999999999999875321110    12244444444322    2467888


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009636          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP  425 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~  425 (530)
                      --...+-..+.. ++++ +..+...+++.+..+.+..
T Consensus       175 ~L~~Ffp~y~~s-~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  175 CLSVFFPVYASS-SPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHcC-CHHH-HHHHHHHHHHHHHHHHhCc
Confidence            777777777775 3444 3445566777777766543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.23  Score=51.96  Aligned_cols=220  Identities=10%  Similarity=0.092  Sum_probs=136.4

Q ss_pred             CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009636          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA  291 (530)
Q Consensus       212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~  291 (530)
                      .++.+.++.+++..+..+.+...........+++......+++.|+-+--+++..+..+++-.++        .+++.+.
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~  808 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS  808 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence            45567788999999999999776666777789999999999999999888888887777755332        4566666


Q ss_pred             Hh-hCCCC---chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009636          292 EF-LMHPS---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI  367 (530)
Q Consensus       292 ~l-L~~~~---~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (530)
                      .. .+..+   .+.+...-.++.+++..-.+......+ -++..++...+++ +...|..++..++++|....-.....+
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            63 32221   233333445555555433322222222 4566777777776 778899999999999874332222222


Q ss_pred             HhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHH--HHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHH
Q 009636          368 EANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFL--VIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILK  442 (530)
Q Consensus       368 ~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~  442 (530)
                      . .++..++.+... +.+-+|+.|+..+..+..+-..+....+  .-.+....+..+.... +..+...+..++..+-.
T Consensus       887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a  964 (982)
T KOG4653|consen  887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA  964 (982)
T ss_pred             H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            1 245555555544 4688999999999999886554433322  1113333444444333 33344445555544443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.30  E-value=0.3  Score=50.10  Aligned_cols=193  Identities=13%  Similarity=0.169  Sum_probs=137.8

Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                      ...+++|.|++++...|..++...+.-+-.....-.   ...++..+++.+..-+.+.++.++...+.++..++..-.. 
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~-  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK-  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence            557899999999999999999887766655544332   3356668899999999999999999999999888853221 


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC-cHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN-IIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~-~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                        ..+...++..+..+-.+. +..+|....-+|+.++.......    ..+ ....+.+.+.++-..-|..+.+++....
T Consensus       403 --~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  403 --RNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             --hhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence              234444555555555544 78899998889998876532222    223 3345555667676778888888887665


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhh
Q 009636          399 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE  447 (530)
Q Consensus       399 ~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~  447 (530)
                      ..-....    +...+++.++.+.-+++..++..+..++...+...++.
T Consensus       476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            5332222    33467888888888999999999999998888776654

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.16  Score=53.05  Aligned_cols=222  Identities=13%  Similarity=0.151  Sum_probs=135.8

Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhch
Q 009636          165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA  244 (530)
Q Consensus       165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~  244 (530)
                      +..+.++-+.++-.++..|..+..... ....+...+++...+..+ .+.|.-+.-+|...+..||...|       ..+
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~i  803 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------EDI  803 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hhh
Confidence            334444556788889999999987553 345666777888899999 78889999999998888987743       556


Q ss_pred             HHHHHHhhcCC-C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009636          245 LPALAHLIHSN-D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (530)
Q Consensus       245 l~~L~~ll~~~-d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~  320 (530)
                      +|.+...-.+. +   .+-+-.+-.++.++...-.+....... -++...+..+.+++...|..++..+|+++.......
T Consensus       804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            66666633221 1   222333335555555433332222222 455667777777777789999999999986544332


Q ss_pred             HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH---HhCcHHHHHHHHhcC-chhHHHHHHHHHHH
Q 009636          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI---EANIIGPLVALLENA-EFDIKKEAAWAISN  396 (530)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~i~~L~~ll~~~-~~~v~~~a~~aL~n  396 (530)
                      ...+ ..++..++.+...+...-+|+.|+..+..+..+.....-.+.   .......+....... +..++..|+.++-.
T Consensus       883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            2211 234555666666554788999999999988876543222222   112333333333333 44566666655543


Q ss_pred             h
Q 009636          397 A  397 (530)
Q Consensus       397 l  397 (530)
                      +
T Consensus       962 i  962 (982)
T KOG4653|consen  962 I  962 (982)
T ss_pred             H
Confidence            3

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.25  E-value=0.055  Score=45.89  Aligned_cols=144  Identities=15%  Similarity=0.133  Sum_probs=100.6

Q ss_pred             HHHHHhhC--CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636          288 PRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       288 ~~L~~lL~--~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                      +.++..|.  ...+.++..++-++..+..    ....-....+-+.+-..+... +.+-...++.+++.+.-+.++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34444444  3567789999888888852    111222333445555666655 6667788889999998888888777


Q ss_pred             HH-HhCcHHHHHHHHh--cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChH-HHHHHHHHHHH
Q 009636          366 VI-EANIIGPLVALLE--NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPR-IVTVCLEGLEN  439 (530)
Q Consensus       366 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~-~~~~al~~l~~  439 (530)
                      ++ ..|+++.+..++.  ..+..++..++.+|..-+..   +.++..+...+++.|-.+++ ++++. ++..++-+|.+
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            76 5789999999998  77889999999999887773   44555566677999999996 45555 67666666654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.23  E-value=1.3  Score=43.56  Aligned_cols=193  Identities=15%  Similarity=0.135  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCC
Q 009636          136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP  214 (530)
Q Consensus       136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~  214 (530)
                      .|++.|-.+....+.....+.+.+++..++..+...-....+.  .-...-.... ++.+.....       ...+ ...
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~   72 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ   72 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence            4677788888877788888899999999999885321111110  0000000010 111111100       0000 111


Q ss_pred             chhHHHHHHHHhhhhcc-CCCC--CC-hhhh-hchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009636          215 KLSMLRNATWTLSNFCR-GKPQ--PP-FDQV-SPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (530)
Q Consensus       215 ~~~~~~~a~~~L~~L~~-~~~~--~~-~~~~-~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (530)
                      ...+.+..+.++..+.. ....  .. .... ..++..|...+++.   .+.+...++..+..+..+.+.....+.+.|+
T Consensus        73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            23444555555555555 2211  11 1222 34555666777655   5788899999999999999988899999999


Q ss_pred             HHHHHHhhC-C---CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC
Q 009636          287 FPRLAEFLM-H---PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN  339 (530)
Q Consensus       287 l~~L~~lL~-~---~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~  339 (530)
                      ++.+++.+. .   .+.++....-.+++.||- +....+.+.+.+.++.+++++.+.
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence            999999988 4   345666666677888876 445556788899999999999876

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.19  E-value=0.25  Score=48.20  Aligned_cols=147  Identities=14%  Similarity=0.205  Sum_probs=100.6

Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHH-HHHhccCChHHHHH
Q 009636          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWA-LSYLSDGTNDKIQA  280 (530)
Q Consensus       202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~-l~~l~~~~~~~~~~  280 (530)
                      ++..+++.+.++.+...+..|+..|..+|+..+..-+....-.+..+++.-.+.++++...|..+ +.-++...+..   
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence            45667777856688999999999999999998766655555566666666656655554444333 33344444322   


Q ss_pred             HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       281 ~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                           .+..+..++...+......++.++..++..-....-..+-..+.|.+++-..+. +..||+.|.++|..+..
T Consensus       407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 233455555567777778888888888865433222223457899999999998 99999999999988864

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.19  E-value=1.7  Score=46.67  Aligned_cols=206  Identities=15%  Similarity=0.177  Sum_probs=124.5

Q ss_pred             hCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCc----hhHHHHHHH
Q 009636          157 DHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATW  224 (530)
Q Consensus       157 ~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~----~~~~~~a~~  224 (530)
                      +.|++..++.++.+     ....+....+..|...+.- +.+|+.+++.++++.|+..+.   ....    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            46788888888865     2334555556666555444 568999999999999998884   2222    556666665


Q ss_pred             HhhhhccCCCCCCh---------h----hhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 009636          225 TLSNFCRGKPQPPF---------D----QVSPALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVF  287 (530)
Q Consensus       225 ~L~~L~~~~~~~~~---------~----~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l  287 (530)
                      ++-.+.........         .    ....-+..++..+.+.    ++.+....++.|.+|+.+.++..+.+++.   
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~---  270 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH---  270 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH---
Confidence            55555443211100         0    1233356666666543    68899999999999999998887766652   


Q ss_pred             HHHHHhhCCC-----CchhHHHHHHHHhHhhcCC------chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636          288 PRLAEFLMHP-----SPSVLIPALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       288 ~~L~~lL~~~-----~~~~~~~al~~L~nl~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                        +-+.++-+     ...--...+.+++.++.+-      ....+.+++.|++...+.+|... -|..+           
T Consensus       271 --F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~~-----------  336 (802)
T PF13764_consen  271 --FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSLK-----------  336 (802)
T ss_pred             --HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Ccccc-----------
Confidence              22222211     1111123466666666543      24567788899999888888766 44331           


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHHHh
Q 009636          357 AGNREQIQAVIEANIIGPLVALLE  380 (530)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~ll~  380 (530)
                      ..+.+.....+....+|..+.+|.
T Consensus       337 ~~~s~eWk~~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  337 NTDSPEWKEFLSRPSLPYILRLLR  360 (802)
T ss_pred             cCCCHHHHHHhcCCcHHHHHHHHH
Confidence            112333444555566666666654

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.15  E-value=0.41  Score=48.94  Aligned_cols=176  Identities=18%  Similarity=0.147  Sum_probs=121.0

Q ss_pred             HhhcCCChHHHHHHHHHHH--HhhcCCCCCcHHHHHHcCCHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636           80 AGVWSNDSGVQYECTTQFR--KLLSIERSPPIEEVIRSGVVPRFVEFLLRE---DYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        80 ~~l~s~~~~~~~~a~~~l~--~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~---~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      ..+...+++....|...++  .++-++      .-+-+..-|.+.+...++   +++.++..|.-+|..+-.-+.+.+. 
T Consensus       860 ~~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-  932 (1128)
T COG5098         860 SRIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-  932 (1128)
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-
Confidence            3445555555556666555  233331      112234456666666552   2499999999999988775555443 


Q ss_pred             HHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          155 VIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       155 ~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                          ..+|.|+..+. +++|.+|..|+-.++.++..-....+.     ....|.+-| .+.+..+++.|+.++..|.-..
T Consensus       933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag 1002 (1128)
T COG5098         933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred             ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc
Confidence                34799999997 689999999999999887443222222     345677777 7788999999999999987653


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                          ...+.|-++.+..+|.++|.++..-|=..+..++..+..
T Consensus      1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098        1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred             ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence                234578889999999999998877777777777765443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.49  Score=46.51  Aligned_cols=267  Identities=15%  Similarity=0.125  Sum_probs=141.0

Q ss_pred             CChHHHHHhh----CCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          159 GAVPIFVKLL----YSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       159 g~i~~L~~ll----~~~~~~i~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      |.+..++..+    .+++..++..|+..|+|.+...|. ++..  ..-.+..++.-|.+..+.++...++.+|..+....
T Consensus       254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~  331 (533)
T KOG2032|consen  254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA  331 (533)
T ss_pred             ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence            5554444444    346778999999999999988553 2222  22245566666646668899999998888877654


Q ss_pred             CCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH----HHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636          234 PQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA----VIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       234 ~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~----~~~~~~l~~L~~lL~~~~~~~~~~al~~  308 (530)
                      ..... ...-.+.-.+..++.+.+++.+..+...++.++.......+.    .+..+ ...++-.+.+.++.+ ..||+.
T Consensus       332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~-~~~lllhl~d~~p~v-a~ACr~  409 (533)
T KOG2032|consen  332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKR-LAPLLLHLQDPNPYV-ARACRS  409 (533)
T ss_pred             hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhc-cccceeeeCCCChHH-HHHHHH
Confidence            33222 222334445677888899999999988888876322111111    12212 233444455566543 456666


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK-EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      ....+.-+- ..+.+  .++++..   + ...-+..+. ..-|+ ..+....++....+..     ....++++.=+.++
T Consensus       410 ~~~~c~p~l-~rke~--~~~~q~~---l-d~~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr  476 (533)
T KOG2032|consen  410 ELRTCYPNL-VRKEL--YHLFQES---L-DTDMARFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQVR  476 (533)
T ss_pred             HHHhcCchh-HHHHH--HHHHhhh---h-HHhHHHHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHHHH
Confidence            555553211 11111  1122211   1 110111111 11121 1122222332222221     22223333333555


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636          388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~  442 (530)
                      ..|...-.++..+-.+..+.+.--.-+...+..+...+-++++..+..++..++.
T Consensus       477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            5555555555554444444443333456677778888899999999999887764

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.97  E-value=0.28  Score=44.76  Aligned_cols=103  Identities=20%  Similarity=0.249  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhh
Q 009636          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA  465 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~  465 (530)
                      ...|+.+|.-++.- .+.....+-+...+..|+++|. ...+.+...++.+|..++-..+.+           ...|++.
T Consensus       108 i~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-----------~r~FE~~  175 (257)
T PF08045_consen  108 IALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-----------QRDFEEL  175 (257)
T ss_pred             HHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-----------HHHHHHh
Confidence            44455666655554 4566677778899999999995 567889999999999998777652           6689999


Q ss_pred             ccHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCCCCCC
Q 009636          466 EGLEKIESLQT--HDNAEIYEKSVKLLETYWLDDEDET  501 (530)
Q Consensus       466 ~~~~~l~~l~~--~~~~~v~~~a~~il~~~~~~~~~~~  501 (530)
                      +|+..+..+..  +.+.+++-++...+--|...+....
T Consensus       176 ~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~  213 (257)
T PF08045_consen  176 NGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSI  213 (257)
T ss_pred             CCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCC
Confidence            99999999854  4677888899999988887665543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.95  E-value=0.39  Score=47.04  Aligned_cols=275  Identities=17%  Similarity=0.143  Sum_probs=143.5

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh-hhccCCCCCCh
Q 009636          161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NFCRGKPQPPF  238 (530)
Q Consensus       161 i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~-~L~~~~~~~~~  238 (530)
                      +.+++.-+.+ .+..+|..++--|+.-+.+. .++..+...|....+++.+....+..+...++.++. -++++......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            4566666653 45678888888888887755 489999999999999999965555535555544444 44444444444


Q ss_pred             hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC---------CCCchhHHHHHHH
Q 009636          239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---------HPSPSVLIPALRT  308 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---------~~~~~~~~~al~~  308 (530)
                      ......+..++.++... ...+.....      . .......... .+.+..+...+.         +....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            44556666667777611 000000000      0 0000001011 112222222221         1223345556666


Q ss_pred             HhHhhc--------------CCchhhHHHhhcCchHHHHHhhcC----C------Cc-----hhHHHHHHHHHHHHhcCC
Q 009636          309 VGNIVT--------------GDDMQTQCVIEYQALPCLLNLLSG----N------YK-----KSIKKEACWTVSNITAGN  359 (530)
Q Consensus       309 L~nl~~--------------~~~~~~~~~~~~~~l~~L~~lL~~----~------~~-----~~v~~~a~~~L~nl~~~~  359 (530)
                      +-.++.              ..+...+.+...|++..++.++..    .      ..     ...-..+..+|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            655531              112234455667888888888752    1      01     113345677888877655


Q ss_pred             HHHHHHHHH--hCcHHHHHHH----HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH-------HhccC---
Q 009636          360 REQIQAVIE--ANIIGPLVAL----LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL-------CDLLV---  423 (530)
Q Consensus       360 ~~~~~~l~~--~~~i~~L~~l----l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L-------~~lL~---  423 (530)
                      .++-.+++.  .+.++.+...    ....-..+...++..+.|++.. +++.+..+...++...+       ..++.   
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            554444443  2333333322    2222345567889999999886 44444444433322211       11111   


Q ss_pred             ----CCChHHHHHHHHHHHHHHHhhh
Q 009636          424 ----CPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       424 ----~~~~~~~~~al~~l~~ll~~~~  445 (530)
                          ...-++...+++++.|+..+.+
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeCc
Confidence                1223466677777777776553

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.94  E-value=0.053  Score=46.08  Aligned_cols=147  Identities=11%  Similarity=0.043  Sum_probs=92.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (530)
                      .+++.|+++|+.+.+..++.+++++|+.|.+-+|...+.+....  +.-.  -...+........... .+...    .+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~~~-~~~~~----~e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLPMM-GISPS----SE   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHhhc-cCCCc----hH
Confidence            46788899998887699999999999999997776665433211  1000  0111112222222111 11111    12


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      ...-..++..|++.+.+..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2233346788888885555555555677777777755555557778999999999999887788888777776653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.78  E-value=1.1  Score=47.90  Aligned_cols=196  Identities=20%  Similarity=0.221  Sum_probs=118.2

Q ss_pred             HHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHH--HHHHhhcCCCh-h
Q 009636          182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDD-E  258 (530)
Q Consensus       182 ~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~--~L~~ll~~~d~-~  258 (530)
                      +|+++....+.....+++.+++..+...+......++...++..+.+++...+..........+.  .+-.++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45577777777778889999999999999766788999999999999998764433332222222  33333333333 6


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009636          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG  338 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~  338 (530)
                      .-..++..++.+...+++.......               +.+......++..+.....   ......-+.+.+..++..
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~~---~~~~~~~f~~~~~~il~~  635 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSEI---RVINDRSFFPRILRILRL  635 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccce---eehhhhhcchhHHHHhcc
Confidence            6666777777666554431111111               1122222222222222111   111122222225566665


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHH
Q 009636          339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAIS  395 (530)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~  395 (530)
                      +..+..+..|.|++.+++..+++..+.+.+.++++.+.+.-... ..+++.++...+-
T Consensus       636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            55778899999999999998888888888889888887754332 4455555554443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=3  Score=43.43  Aligned_cols=299  Identities=15%  Similarity=0.085  Sum_probs=162.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHhhhC--CCchhhhhHhhcCChHH
Q 009636          136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAG--DSPRCRDLVLSQGGLVP  205 (530)
Q Consensus       136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------~~~~i~~~a~~~L~nl~~--~~~~~~~~i~~~~~i~~  205 (530)
                      +|+.++..+.+..++.  .+  .|+++.+...+..        +++.-.+.|++.++++..  ..+....-+++.-+++.
T Consensus       389 aal~fl~~~~sKrke~--Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h  464 (970)
T COG5656         389 AALFFLIISKSKRKEE--TF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH  464 (970)
T ss_pred             HHHHHHHHHhcccchh--hh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            3555555555432222  12  4889999998832        234556788888888764  22222223333334444


Q ss_pred             HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009636          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (530)
Q Consensus       206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (530)
                      ++..+ .++..-++..+|..++.+..+  -+.......+......++.+++-.++..|+-++..+..+..  ....+.+.
T Consensus       465 v~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sah  539 (970)
T COG5656         465 VIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAH  539 (970)
T ss_pred             hhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhh
Confidence            55555 666777888999999999444  33333445566677778888888888888888888776542  23334434


Q ss_pred             c---HHHHHHhhCCCCchhHHHHHHHH-hHhhcCCchhhHHHh---hcCchHHHHHhhcCCCc-----hhHHHHHHHHHH
Q 009636          286 V---FPRLAEFLMHPSPSVLIPALRTV-GNIVTGDDMQTQCVI---EYQALPCLLNLLSGNYK-----KSIKKEACWTVS  353 (530)
Q Consensus       286 ~---l~~L~~lL~~~~~~~~~~al~~L-~nl~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~-----~~v~~~a~~~L~  353 (530)
                      +   ++.|+.+-+.-+.+....+...+ +..+..-......+.   -..++.....++..+.+     .+-+..|...|.
T Consensus       540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~  619 (970)
T COG5656         540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR  619 (970)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence            4   34444443333333333333222 111111111111111   11223333334433211     123344555555


Q ss_pred             HHhc------CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh
Q 009636          354 NITA------GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP  427 (530)
Q Consensus       354 nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~  427 (530)
                      .+.+      ..+...+.+. ....|..-=++.+.-.++-.+|+..+-+.+...  ..+.. +-=|+.+.+.+++.+..+
T Consensus       620 T~~smiLSlen~p~vLk~le-~slypvi~Filkn~i~dfy~Ea~dildg~tf~s--keI~p-imwgi~Ell~~~l~~~~t  695 (970)
T COG5656         620 TIESMILSLENRPLVLKYLE-VSLYPVISFILKNEISDFYQEALDILDGYTFMS--KEIEP-IMWGIFELLLNLLIDEIT  695 (970)
T ss_pred             HHHHHHHhcccchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH--HHhhh-hhhHHHHHHHhcccccch
Confidence            4433      2333333332 234455444566666778888888887766521  11111 223678888888887775


Q ss_pred             -HHHHHHHHHHHHHHHhhhhh
Q 009636          428 -RIVTVCLEGLENILKVGEAE  447 (530)
Q Consensus       428 -~~~~~al~~l~~ll~~~~~~  447 (530)
                       .....+..++.+++.+|.+.
T Consensus       696 ~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         696 AVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             hhhHHHHHHHHHHHHHhCccc
Confidence             66778888999999988543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.77  E-value=0.61  Score=45.58  Aligned_cols=174  Identities=11%  Similarity=0.129  Sum_probs=104.8

Q ss_pred             chhHHHHHHHHhhh-hccCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009636          215 KLSMLRNATWTLSN-FCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (530)
Q Consensus       215 ~~~~~~~a~~~L~~-L~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  292 (530)
                      ..+-+..|+.-|.. +|.+.-..-......++..++..+.. .+..+..-+++.|..++.+......--.+ -.+..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence            33444455553333 33332222222345666777777776 67888889999999999876654321112 23455555


Q ss_pred             hhCCCCchhHHHHHHH-HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhC
Q 009636          293 FLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN  370 (530)
Q Consensus       293 lL~~~~~~~~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~  370 (530)
                      .-.+..+.+...|... +.-++...+...        +..+..++... +...-..+...+..++.. +.+....++ ..
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~d  448 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PD  448 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hh
Confidence            5555555555555444 333444444332        33444455445 555555666677777763 344333333 36


Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      +.|.+++..++.+..||+.|+++|..+..
T Consensus       449 iaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            89999999999999999999999998865

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.72  E-value=0.83  Score=41.50  Aligned_cols=194  Identities=16%  Similarity=0.091  Sum_probs=116.3

Q ss_pred             CchhHHHHHHHHhHhhcCCchhhHHHhh-cCchHHHHHhh-------cCCC-chhHHHHHHHHHHH--HhcCCHHHHHHH
Q 009636          298 SPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLL-------SGNY-KKSIKKEACWTVSN--ITAGNREQIQAV  366 (530)
Q Consensus       298 ~~~~~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL-------~~~~-~~~v~~~a~~~L~n--l~~~~~~~~~~l  366 (530)
                      +++.++.|+.-|+.--...+...-.+.. .|.+..|+.=+       ..+. .+..-...|++|+-  ..+..++.+..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            4556777776666655444444333332 35444443222       2220 12233344444433  223457888899


Q ss_pred             HHhCcHHHHHHHHhcC-----chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636          367 IEANIIGPLVALLENA-----EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       367 ~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll  441 (530)
                      +++++.-.|...++..     -..+|..++.+++.+....+++.+.++.+..+++..++.++.++.-....|.-.+.+++
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9999877777777554     25689999999999999999999999999999999999999888888888999999999


Q ss_pred             HhhhhhhhcCCCCchhhHHHhhhhccHHH-HHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          442 KVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ........-+.. .+.|.   .=...+.. +..+...+++.+-+-......+..+
T Consensus       168 ~dd~GL~yiC~t-~eRf~---av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd  218 (262)
T PF04078_consen  168 LDDVGLNYICQT-AERFF---AVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD  218 (262)
T ss_dssp             HSHHHHHHHTSS-HHHHH---HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHhcC-HHHHH---HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence            776654433221 11111   11223333 3456777888776655555555443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.72  E-value=0.018  Score=33.53  Aligned_cols=30  Identities=17%  Similarity=0.305  Sum_probs=26.2

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      ++|.+++++.+++++||..|+++|+.++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.69  E-value=0.74  Score=41.06  Aligned_cols=141  Identities=10%  Similarity=0.138  Sum_probs=101.1

Q ss_pred             hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHH
Q 009636          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPL  375 (530)
Q Consensus       301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L  375 (530)
                      -...|+..+..+++ .++.+..++++.+--.+..+|...    ..+-+|-.+..+|+.+.. ++.+.+..+...+++|.+
T Consensus        95 RVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   95 RVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             hHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            34556666666665 444555677777776777777543    245688999999999988 677888889999999999


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--------CChH-HHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--------GCIK-PLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       376 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~-~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ++.+..++...+.-|...+..+....  ....|+.+.        -++. .+..+.+.+++.+...++.+..++....
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999988743  233332211        1122 2344556788888888888888776543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.65  E-value=0.11  Score=37.07  Aligned_cols=66  Identities=26%  Similarity=0.380  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009636          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQG  413 (530)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  413 (530)
                      .+.|.|+++++++. +..+..+.+.++++.++++.... ...+|-.|.++|+-++.  +.+..+.|-+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999774 56666677789999999998755 68899999999999988  557766665554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.57  E-value=0.13  Score=45.26  Aligned_cols=111  Identities=16%  Similarity=0.165  Sum_probs=79.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC--------CCHHHHHHHHHHHHHHh
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIA  145 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~--------~~~~i~~~a~~~L~~l~  145 (530)
                      ....+++.+.+.....  ..+..|+..+......-++.+++.|++..|+++|..-        .+..++.+++.||..+.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4466777887655433  5566666666553233467788888899999887631        23578999999999999


Q ss_pred             cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009636          146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (530)
Q Consensus       146 ~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~  187 (530)
                      . +......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8 5566666665 688999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.54  E-value=1.4  Score=45.53  Aligned_cols=110  Identities=20%  Similarity=0.200  Sum_probs=81.4

Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009636          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~  318 (530)
                      ....+.+..+++...+++..|+..+|..|..+...... +...+-.++...+..-+.+..+.++..|+.+|+.+=.....
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d  159 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD  159 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence            35677788888888899999999999999988864322 22233347778888888899999999999999998632211


Q ss_pred             hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      .     +..+...+..+++.+.+++||+.|...|.+
T Consensus       160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            1     234677788888887789999987655543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.53  E-value=0.3  Score=41.42  Aligned_cols=136  Identities=20%  Similarity=0.178  Sum_probs=94.0

Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHH
Q 009636          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCL  332 (530)
Q Consensus       254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L  332 (530)
                      ...++++..+.-++..+.+.    ...-....+-+.+-..+...+.+-...++.++..+..+.++....++ ..|+++.+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            35677888888888777421    12222223344555566666666788899999999888887766666 67999999


Q ss_pred             HHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchh-HHHHHHHHHHH
Q 009636          333 LNLLS--GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFD-IKKEAAWAISN  396 (530)
Q Consensus       333 ~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-v~~~a~~aL~n  396 (530)
                      ..++.  .. +..++..++.+|+--|..  +.++..+...+++.|-++++ +.+.. +|..|+-+|+.
T Consensus        92 ~~~~~~~~~-~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   92 LPLASRKSK-DRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHHH-CTS--HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhcccC-CHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            99998  55 777888888877765543  44555555678999999995 44555 88888888765

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.48  E-value=2.4  Score=45.28  Aligned_cols=174  Identities=14%  Similarity=0.206  Sum_probs=110.4

Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH--HHHHHHHHhCcHHHHHHHHhcCc-h
Q 009636          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR--EQIQAVIEANIIGPLVALLENAE-F  384 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~--~~~~~l~~~~~i~~L~~ll~~~~-~  384 (530)
                      ++.++...++.....+++.+++..+...+..-....++..+...++|++...+  +.......... ..+..++...+ .
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence            78888888888999999999999999999866577899999999999987322  11111111111 12222333333 3


Q ss_pred             hHHHHHHHHHHHhhcCCCH--------HHHHHH--------------HHcCChHH-HHhccC-CCChHHHHHHHHHHHHH
Q 009636          385 DIKKEAAWAISNATSGGTH--------EQIKFL--------------VIQGCIKP-LCDLLV-CPDPRIVTVCLEGLENI  440 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~~~~--------~~~~~l--------------~~~~~i~~-L~~lL~-~~~~~~~~~al~~l~~l  440 (530)
                      +.-..|+..|..+...++.        .....+              .....+.+ +..++. +..+..+..|++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            6777777777777765310        000111              11111222 434443 44566778888888888


Q ss_pred             HHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 009636          441 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKLLETY  493 (530)
Q Consensus       441 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~il~~~  493 (530)
                      +...+.           ++..+.+.|++..+.++.. ....++.+.+..+++..
T Consensus       653 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  653 LEQNKE-----------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             HHcChh-----------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            876544           5777888999998888732 23666777777777654

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.48  E-value=4  Score=42.88  Aligned_cols=279  Identities=12%  Similarity=0.101  Sum_probs=139.9

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch-hh
Q 009636          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CR  194 (530)
Q Consensus       119 ~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~-~~  194 (530)
                      ..+++++++.++--++..+++++.-...+-.-..+.+..  ......+.+++.. ..-+.+...+.+|+.+.....+ .+
T Consensus       529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~  608 (978)
T KOG1993|consen  529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA  608 (978)
T ss_pred             HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            345666766644666777777777666532222222211  2233344444443 3445566677777776543222 11


Q ss_pred             hhHhhcCChHHHHHhh-cCC-CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh---hHHHHHHH----
Q 009636          195 DLVLSQGGLVPLLAQL-NGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD---EVLTDACW----  265 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll-~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~---~v~~~a~~----  265 (530)
                      ....   .+-.++..+ ..+ ..+-++...+.+|.++...-.........-++|.+-....-+.+   -..+++..    
T Consensus       609 P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~  685 (978)
T KOG1993|consen  609 PYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT  685 (978)
T ss_pred             HHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH
Confidence            1111   111222222 123 34445556677888888775544444444445544443332222   23333322    


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH
Q 009636          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK  345 (530)
Q Consensus       266 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  345 (530)
                      +|.|...-.++    +.  +++|.++.++......+ ..++.++....--.....-.-...|+...+..++.+- ..+-.
T Consensus       686 ~L~n~~~l~p~----ll--~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl  757 (978)
T KOG1993|consen  686 TLMNSQKLTPE----LL--LLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGL  757 (978)
T ss_pred             HHhcccccCHH----HH--HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence            23333222222    22  56777777776554332 2333343332211111111122347777787777655 44444


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009636          346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGGTHEQIKFLV  410 (530)
Q Consensus       346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~  410 (530)
                      ...+.++.++...++ ........++++.+...+-.  ..|.+-..-+.+++.++.. +++....++
T Consensus       758 ~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~-n~~~~msvl  822 (978)
T KOG1993|consen  758 QAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR-NPSLFMSVL  822 (978)
T ss_pred             HHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc-ChHHHHHHH
Confidence            555666666655544 45555667888888776533  3577888888888888776 444444433

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.41  E-value=0.56  Score=48.29  Aligned_cols=258  Identities=13%  Similarity=0.128  Sum_probs=164.1

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHH
Q 009636           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      +-.+++.++..+.+.+..-...|.+.+..    --+.++...++|.|+..+.-++ ...+. ..+.-++..... .+   
T Consensus       256 ~~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~l-tpl~k~~k~ld~-~e---  326 (690)
T KOG1243|consen  256 TLLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFL-TPLFKLGKDLDE-EE---  326 (690)
T ss_pred             HHHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhh-hHHHHhhhhccc-cc---
Confidence            34555566666776666666666654322    2334555667788777766554 11222 122222222221 22   


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                        +..+++|.|+++++.++..+|-.-+.-+-+....   ..+.+++..+++.+..-+ .+++..++...+.++..|+..-
T Consensus       327 --yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL  400 (690)
T KOG1243|consen  327 --YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKL  400 (690)
T ss_pred             --cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhh
Confidence              5568899999999999998887666555555433   334556677888888877 7889999999999988887653


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc-HHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-FPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                      ...  ......+..+..+-..++..++.+..-|++.++.......    ..++ ...+...+.++-...+..+++.+...
T Consensus       401 ~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at  474 (690)
T KOG1243|consen  401 SKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAAT  474 (690)
T ss_pred             chh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence            221  2334556666666556678888888888888876533211    2233 33444456666677788888887766


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ....+.   .-+...++|.+..+..+. +..+|..|-.++..+-.
T Consensus       475 ~~~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  475 QEYFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             ccccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence            554332   234567888888888888 88888888777665543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.40  E-value=0.023  Score=33.06  Aligned_cols=29  Identities=28%  Similarity=0.429  Sum_probs=25.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~  146 (530)
                      ++|.+++++++++ +.+|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            3789999999998 9999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.39  E-value=0.39  Score=46.96  Aligned_cols=140  Identities=17%  Similarity=0.160  Sum_probs=83.0

Q ss_pred             HHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCCchhHHHHHHHHhHhhcCCc
Q 009636          245 LPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       245 l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~~~~al~~L~nl~~~~~  317 (530)
                      .+.+-.-+...| ..-+..|+..+..++.........++.    ..+..++.      ..+|.-+..|+..++.++....
T Consensus       212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~  287 (370)
T PF08506_consen  212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS  287 (370)
T ss_dssp             HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred             HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence            344444444333 445667777888887553332222222    22333332      3577888999999999987543


Q ss_pred             h------------hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchh
Q 009636          318 M------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD  385 (530)
Q Consensus       318 ~------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  385 (530)
                      .            ....+....++|-|.  -.....|-++..|++.+..+-..-+.  ..+  .+++|.++..|.+++.-
T Consensus       288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~~~~v  361 (370)
T PF08506_consen  288 TTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQSSSYV  361 (370)
T ss_dssp             -BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTSS-HH
T ss_pred             cccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCCCCcc
Confidence            2            123334455666555  12222778999999999999764332  122  24899999999999999


Q ss_pred             HHHHHHHHH
Q 009636          386 IKKEAAWAI  394 (530)
Q Consensus       386 v~~~a~~aL  394 (530)
                      |...|+.++
T Consensus       362 v~tyAA~~i  370 (370)
T PF08506_consen  362 VHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhhhhhhC
Confidence            999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.39  E-value=0.49  Score=50.75  Aligned_cols=187  Identities=14%  Similarity=0.062  Sum_probs=132.5

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009636          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (530)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  241 (530)
                      +.+..-+.+.++.-+..++..+..+..... ........+.+..+++....+.+..+...++.+|..++..-........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            444455556777788888888887776554 1122223445666677766788899999999999999988755566667


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch-hh
Q 009636          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-QT  320 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~-~~  320 (530)
                      ..+.|.+++.+......++..+..++-.++....       -....+.+...+.+.++.++..+...+.......+. ..
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            8888999998888877777776666654443211       114567788899999999999988888877765542 11


Q ss_pred             HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ..-.-.++++.++....+. +.+||..|..+++-+..
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            1112246788888888888 89999999998888765

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.15  Score=50.76  Aligned_cols=151  Identities=22%  Similarity=0.313  Sum_probs=101.3

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC
Q 009636          123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG  201 (530)
Q Consensus       123 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~  201 (530)
                      +++.+.+ +-+++..+..++.--.++..       .|++..|+.+ .++.+.+++..|+-+|+-+|.+++.         
T Consensus       523 ell~d~d-s~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         523 ELLYDKD-SILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHhcCch-HHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            3444444 66676666555443332222       3667778877 5668899999999999999876653         


Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 009636          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  281 (530)
Q Consensus       202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~  281 (530)
                      .+...+++|..+.+..++.....+|.-.|.+...      ..++..|-.++.....-|+..++.+++-+.-...+....-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            5666778887778899999899999888877532      3345566777778888899999988887764332221111


Q ss_pred             HHhCcHHHHHHhhCCC
Q 009636          282 IEAGVFPRLAEFLMHP  297 (530)
Q Consensus       282 ~~~~~l~~L~~lL~~~  297 (530)
                      +. ++...+.+++.+.
T Consensus       660 v~-~I~k~f~~vI~~K  674 (926)
T COG5116         660 VK-RIIKKFNRVIVDK  674 (926)
T ss_pred             HH-HHHHHHHHHHhhh
Confidence            11 5556666666554

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.37  E-value=1.5  Score=43.02  Aligned_cols=274  Identities=17%  Similarity=0.136  Sum_probs=139.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HhhhCCCchhhh
Q 009636          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWAL-GNIAGDSPRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L-~nl~~~~~~~~~  195 (530)
                      +..+++=|.+.....+|..++--|+.-+. +++.+..+..+|.+..+++.+.. ++..+...++.++ .-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            55566666644446889999888888888 79999999999999999999955 3332444443444 44444443 334


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhc---------CCChhHHHHHHH
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIH---------SNDDEVLTDACW  265 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~---------~~d~~v~~~a~~  265 (530)
                      .+...+....+++++.-...........      ..  ..... ......+..+.+.+.         .....-+.-++.
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall  172 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL  172 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence            4445555555566663000000000000      00  00000 000111111111110         011112222333


Q ss_pred             HHHHhc--------------cCChHHHHHHHHhCcHHHHHHhhCC----C-------C-----chhHHHHHHHHhHhhcC
Q 009636          266 ALSYLS--------------DGTNDKIQAVIEAGVFPRLAEFLMH----P-------S-----PSVLIPALRTVGNIVTG  315 (530)
Q Consensus       266 ~l~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~~----~-------~-----~~~~~~al~~L~nl~~~  315 (530)
                      ++-.++              ...+.....+...|+++.++.++..    .       .     ......++++|-+.+..
T Consensus       173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~  252 (361)
T PF07814_consen  173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL  252 (361)
T ss_pred             HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence            332221              1111223345566788888888751    1       1     12455678888888776


Q ss_pred             CchhhHHHhh--cCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH-------h---
Q 009636          316 DDMQTQCVIE--YQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL-------E---  380 (530)
Q Consensus       316 ~~~~~~~~~~--~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-------~---  380 (530)
                      +......++.  .+.++.+...+-...   ...+...++.++.|++-++++.+..+...++...+..+.       .   
T Consensus       253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            6655445443  233333333322211   334457788999999988877766665543332222111       1   


Q ss_pred             ----cCchhHHHHHHHHHHHhhcCC
Q 009636          381 ----NAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       381 ----~~~~~v~~~a~~aL~nl~~~~  401 (530)
                          ....+...-++.++.|++...
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeC
Confidence                113456677777777777653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.28  E-value=0.1  Score=53.08  Aligned_cols=143  Identities=15%  Similarity=0.128  Sum_probs=105.1

Q ss_pred             cHHHHHHhhCC----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009636          286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       286 ~l~~L~~lL~~----~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      +.|.+.+...+    +++.++..|..+|..+..-+....     ..-+|.++..+.....|.+|.+|...++.++.....
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            44555555544    578889999888888876544433     245788999998443999999999999988764322


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636          362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll  441 (530)
                      .+.     ..-..|.+-|.+.+..||+.+..++.++...+-      +.-.|.+..+..+|+++|..+...|-..+..+.
T Consensus       968 ~~d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         968 TAD-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             hhH-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence            222     234577888888899999999999999988652      234588889999999999998888777776666


Q ss_pred             Hhh
Q 009636          442 KVG  444 (530)
Q Consensus       442 ~~~  444 (530)
                      ...
T Consensus      1037 ~Kd 1039 (1128)
T COG5098        1037 KKD 1039 (1128)
T ss_pred             hcc
Confidence            544

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=95.11  E-value=3.8  Score=40.42  Aligned_cols=267  Identities=13%  Similarity=0.063  Sum_probs=137.0

Q ss_pred             CHHHHHHHHHHHHhhhCCCchhhhhHhhcC---ChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009636          172 SDDVREQAVWALGNIAGDSPRCRDLVLSQG---GLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (530)
Q Consensus       172 ~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~---~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~  247 (530)
                      +..+..+|+.+|+.+..+.. ....+-...   ++...+..+. .+.+..+....+|+|+.=-.............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            67889999999999875543 222221111   2334444442 344677888888887653222211111222223333


Q ss_pred             HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc--CCc-hhhH--
Q 009636          248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT--GDD-MQTQ--  321 (530)
Q Consensus       248 L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~--~~~-~~~~--  321 (530)
                      +..+-+ -+...+....+.++.++....+.....-.. ..++.++..+-+....++..|..++..+..  +.. ....  
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~  216 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV  216 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            333332 345678888888998888776543222211 367788887777777777776655544432  111 1111  


Q ss_pred             -HHhh----cC-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636          322 -CVIE----YQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       322 -~~~~----~~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                       ..++    .+     +.+.|..++... +.....--.|...-+.-+++. .....+ ...+...-..+.++++.+|..|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A  294 (372)
T PF12231_consen  217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA  294 (372)
T ss_pred             HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence             1112    12     344466677663 222222223433333223221 101111 2344455556778899999999


Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHcCChHHHHhccCC-CCh----HHHHHHHHHHHHHHHh
Q 009636          391 AWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVC-PDP----RIVTVCLEGLENILKV  443 (530)
Q Consensus       391 ~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~-~~~----~~~~~al~~l~~ll~~  443 (530)
                      ..+-..++...  +.......+.. +..++..-++. ...    .+...++..+++++-+
T Consensus       295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            88888776522  11111221111 23344343432 222    5677777777777743

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.11  E-value=4.8  Score=45.62  Aligned_cols=148  Identities=16%  Similarity=0.182  Sum_probs=94.2

Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009636          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (530)
Q Consensus       285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (530)
                      +++|.|..-|.+++..+|..|+..+|.+......+.. --...+...++.-+.+. +..||.++.....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7888888889999999999999999999875543322 00124555666666667 889999999999888776555332


Q ss_pred             HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       365 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                      ..   ++...+..  .+.|++++.....++.-+..  . ...-.++.. .+..+.+.+.+....|+..|+..|..+.+.
T Consensus       337 ~~---~~~~~l~~--~~~D~~~rir~~v~i~~~~v--~-~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AS---TILLALRE--RDLDEDVRVRTQVVIVACDV--M-KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HH---HHHHHHHh--hcCChhhhheeeEEEEEeeh--h-HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            22   12222222  23344554443332222211  0 111222233 667777777888999999999999988873

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.11  E-value=0.43  Score=43.52  Aligned_cols=100  Identities=14%  Similarity=0.100  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 009636           89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL  168 (530)
Q Consensus        89 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll  168 (530)
                      ....|++.|.-++--+ ++....+-+...+..|+++|.....+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus       107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            3445667777666553 444555567888999999996554589999999999999999999999999999999999999


Q ss_pred             CC--CCHHHHHHHHHHHHhhhCC
Q 009636          169 YS--PSDDVREQAVWALGNIAGD  189 (530)
Q Consensus       169 ~~--~~~~i~~~a~~~L~nl~~~  189 (530)
                      ++  .+.+++-.++..|.-....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHcc
Confidence            87  4577888888777766543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.10  E-value=2.9  Score=38.96  Aligned_cols=204  Identities=12%  Similarity=0.100  Sum_probs=130.4

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc--CChHHHHHhhcCCC-chhHHHHHHHHhhhh
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQP-KLSMLRNATWTLSNF  229 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L  229 (530)
                      ..+.++|.+..+++.+..-+.+.+..++.+..|+-...-..|....+.  .-...+-.++.... .+++.-.+...+...
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc  152 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC  152 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            356678999999999988778888888888888864332222221111  01222223332222 245544444444444


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhhCCCCchhHHHH
Q 009636          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~~~~a  305 (530)
                      .+...-.........+......++.+.=++..+|..++..+.......+..+.....    .+.--.++.+++.-++..+
T Consensus       153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs  232 (342)
T KOG1566|consen  153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS  232 (342)
T ss_pred             HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence            444332233333455555666666676688888888888877655544444544332    3446667888999999999


Q ss_pred             HHHHhHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          306 LRTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       306 l~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      +..+|.+.-+.+.   ..+++-...-+..++.+|+.+ ...++-+|..+..-+.+
T Consensus       233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA  286 (342)
T KOG1566|consen  233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA  286 (342)
T ss_pred             HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence            9999999765442   334444557788999999998 88999999888777766

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.94  E-value=2.2  Score=41.97  Aligned_cols=145  Identities=13%  Similarity=0.169  Sum_probs=104.8

Q ss_pred             HHHHHHHHhHhhc---CCchhhHHHhh-cCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 009636          302 LIPALRTVGNIVT---GDDMQTQCVIE-YQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL  375 (530)
Q Consensus       302 ~~~al~~L~nl~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  375 (530)
                      ....++++..+..   +.......+++ ..++..|..++.+..  .+.+-..|+.+++.+....|.....+.+.|+++.+
T Consensus        77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~  156 (379)
T PF06025_consen   77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF  156 (379)
T ss_pred             HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence            3344555666555   33344455667 677788888888763  46788899999999998888888899999999999


Q ss_pred             HHHHh-cC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh-------HHHHHHHHHHHHHHHhh
Q 009636          376 VALLE-NA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP-------RIVTVCLEGLENILKVG  444 (530)
Q Consensus       376 ~~ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~-------~~~~~al~~l~~ll~~~  444 (530)
                      ++.+. .+   +.++-...-.+|..++.  +....+.+.+.+.+..+.+++.+++.       ++....-.++..|++..
T Consensus       157 L~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~  234 (379)
T PF06025_consen  157 LDAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH  234 (379)
T ss_pred             HHHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence            99988 43   46677777778888887  56888999999999999998876432       23333444556666666


Q ss_pred             hhhh
Q 009636          445 EAEK  448 (530)
Q Consensus       445 ~~~~  448 (530)
                      +..+
T Consensus       235 p~Lk  238 (379)
T PF06025_consen  235 PSLK  238 (379)
T ss_pred             HHHH
Confidence            6543

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.91  E-value=2.2  Score=42.59  Aligned_cols=259  Identities=14%  Similarity=0.135  Sum_probs=145.8

Q ss_pred             HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C
Q 009636           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-P  171 (530)
Q Consensus        93 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~  171 (530)
                      +-..|..++......+.+..++...+..|+.+++++| +.-|.....+|.++-......+..+.. .+...+.+++.. .
T Consensus       110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~  187 (409)
T PF01603_consen  110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE  187 (409)
T ss_dssp             HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence            4444555554422222333455667889999999999 899999999999888756666665543 445667777754 3


Q ss_pred             CHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHH
Q 009636          172 SDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH  250 (530)
Q Consensus       172 ~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~  250 (530)
                      ...-...++.+++.+..+-. ..+..... -....++.+.....-.........++..++..++..    ...++..+++
T Consensus       188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk  262 (409)
T PF01603_consen  188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLK  262 (409)
T ss_dssp             --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHH
Confidence            44455668888888876422 22222111 022334444433334455566666777666654322    2223333433


Q ss_pred             hhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh---c
Q 009636          251 LIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE---Y  326 (530)
Q Consensus       251 ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~---~  326 (530)
                      .--..++.-..-.+.-+..+...-+ .....+ ...++..+...+.+.+..|.+.|+..+.|     +... .++.   .
T Consensus       263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~~  335 (409)
T PF01603_consen  263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNSR  335 (409)
T ss_dssp             HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTHH
T ss_pred             hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhChH
Confidence            3334454444445555555554332 333322 23577888888999999998888876543     2222 2222   2


Q ss_pred             CchHHHHHhhcCC---C-chhHHHHHHHHHHHHhcCCHHHHHH
Q 009636          327 QALPCLLNLLSGN---Y-KKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       327 ~~l~~L~~lL~~~---~-~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                      .++|.+..-|...   + +..++..|..++.-+..-++.....
T Consensus       336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~  378 (409)
T PF01603_consen  336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK  378 (409)
T ss_dssp             HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            3677777776441   1 5689999999999888877665444

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.63  E-value=0.14  Score=36.62  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhc
Q 009636          134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (530)
Q Consensus       134 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~  200 (530)
                      ...|+|+++++++ ++.....+.+.++++.++++... +...+|-.|.++|+-++.... ..+.+.+.
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHc
Confidence            4679999999998 66677777778999999999875 667899999999999986654 34444443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.58  E-value=2.3  Score=44.04  Aligned_cols=106  Identities=21%  Similarity=0.353  Sum_probs=76.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+.-+++...+.+..+++..+..|+.+...  ...++..+-.++...+..-+.+.. |.++.+|+.+|+.+-.+..+.  
T Consensus        86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   86 TFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC--
Confidence            456666677788999999999999988653  455666666777777777777777 899999999999998532211  


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC
Q 009636          154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS  190 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~  190 (530)
                         +..++..+..+++. +++++|..|+   .||+.+.
T Consensus       161 ---e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdn  192 (892)
T KOG2025|consen  161 ---ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDN  192 (892)
T ss_pred             ---cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCc
Confidence               12456777778766 7889998765   4555444

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.42  E-value=0.23  Score=45.78  Aligned_cols=144  Identities=11%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009636          287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV  366 (530)
Q Consensus       287 l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (530)
                      +...+..|.+.+|.....++..+..++....+.....+. .++-.+++-+++. ...|-+.||.+++.++..-...+...
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667788999999999999999998877644433332 3455566667777 78899999999999987544444442


Q ss_pred             HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636          367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       367 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll  441 (530)
                      .+ +.+..|..--..++.-|+..|-.+|..++.+..+..        ++..|...+....+.++..+.-++.+..
T Consensus       168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            22 222222222222356689999999999998766542        4667777788888888777666555443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.42  E-value=1.6  Score=47.06  Aligned_cols=185  Identities=16%  Similarity=0.119  Sum_probs=128.0

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +.+-..+.+.++..+.+|+..+...++...  ....-...|.+-.+......+.+..+...|+.+|..|+..........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            344445668999999999999999987642  111111235555566555444447888999999999998654432222


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-
Q 009636          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-  234 (530)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-  234 (530)
                       ..++++.|+.-+......+++.+..++-.++...+.       ....+.++..+ .+.++.+...+...+........ 
T Consensus       334 -~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  334 -AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             -HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence             246788999999888888888877777666543221       12456666777 78888888876666665555442 


Q ss_pred             -CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636          235 -QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       235 -~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                       .........++|.++....+.+.+|+..+..+++-+.
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence             2334456888999999999999999999998887765

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.37  E-value=4.1  Score=48.08  Aligned_cols=271  Identities=10%  Similarity=0.069  Sum_probs=140.9

Q ss_pred             CCCHHHHHHHHHHHHhhhCCC---chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHH
Q 009636          170 SPSDDVREQAVWALGNIAGDS---PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP  246 (530)
Q Consensus       170 ~~~~~i~~~a~~~L~nl~~~~---~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~  246 (530)
                      +++..+...|+..|..++..-   ++....-.+..++.++..++..+.+.++++.++.|+.++.......-..-...++.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence            345566667777666666321   11111122345778888888777788999999999998876642211112233344


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHH----HHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhc----CCc
Q 009636          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ----AVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVT----GDD  317 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~----~~~  317 (530)
                      .+.......++.+...+..++..+....-..+.    ..+ ..++..+..+.... +.++-..|+..|.+++.    +.-
T Consensus      1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076       1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence            444444455677777777777665532111000    000 13344444444433 34455566666654421    000


Q ss_pred             -----------------------hhh-----HHHhhcCchHHHH---HhhcCCCchhHHHHHHHHHHHHhcC-----CHH
Q 009636          318 -----------------------MQT-----QCVIEYQALPCLL---NLLSGNYKKSIKKEACWTVSNITAG-----NRE  361 (530)
Q Consensus       318 -----------------------~~~-----~~~~~~~~l~~L~---~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~  361 (530)
                                             ...     ........++.|.   .+..+. +++||..|..+|-.+...     +++
T Consensus      1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076       1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred             cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCHH
Confidence                                   000     0000112334333   334555 899999999988887651     233


Q ss_pred             HHHHHHHhCcHHHHHHHHhcC-----------------------chhHHHHHHHHHHHhhcCCCHHHHHHHH--HcCChH
Q 009636          362 QIQAVIEANIIGPLVALLENA-----------------------EFDIKKEAAWAISNATSGGTHEQIKFLV--IQGCIK  416 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll~~~-----------------------~~~v~~~a~~aL~nl~~~~~~~~~~~l~--~~~~i~  416 (530)
                      ....++. +++.+++..+...                       +..+...+..+|.+++.-- ..+...+-  =.+++.
T Consensus      1386 ~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf-t~fFd~L~~~L~~~l~ 1463 (1780)
T PLN03076       1386 LWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF-VKFYPTVNPLLKKVLM 1463 (1780)
T ss_pred             HHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            3333333 5666666655321                       0012233333344333311 02222221  125566


Q ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          417 PLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       417 ~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      .|..++..++..+...+..+|.+++...
T Consensus      1464 ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1464 LLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            6777777888888889999999887543

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=94.33  E-value=7  Score=39.89  Aligned_cols=258  Identities=13%  Similarity=0.076  Sum_probs=134.1

Q ss_pred             HhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009636           80 AGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        80 ~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      .++..+ ..+.|..++..+..++........  ..    =..+...+.....++.-..-+.+|..|+.+..+.  ..++.
T Consensus        35 DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~--~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~  106 (464)
T PF11864_consen   35 DLIDPNQPSEARRAALELLIACIKRQDSSSG--LM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEY  106 (464)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHccccccH--HH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhccc
Confidence            344443 456888888888888766422111  11    1123344443322332233344444555433332  22456


Q ss_pred             CChHHHHHhhCCC---------------------------CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009636          159 GAVPIFVKLLYSP---------------------------SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (530)
Q Consensus       159 g~i~~L~~ll~~~---------------------------~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~  211 (530)
                      ++.+.|...+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+..
T Consensus       107 ~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~  186 (464)
T PF11864_consen  107 EIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICK  186 (464)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Confidence            7777777766321                           1222334445555555443322111112234555555554


Q ss_pred             CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009636          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA  291 (530)
Q Consensus       212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~  291 (530)
                      ...+....+.++.++-.+.... ..+......++..|.......  +....+-.++.||+......       ..+..|.
T Consensus       187 ~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~  256 (464)
T PF11864_consen  187 STSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLC  256 (464)
T ss_pred             ccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHH
Confidence            4555555566666666665543 122223334444444443222  55556666777777544322       2356677


Q ss_pred             HhhCC------CCchhHHHHHHHHhHhhcCCchhhHHHhhc---CchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636          292 EFLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       292 ~lL~~------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                      .+|.+      .+..+..-|+..++.+..+.......-+..   -+++.+...++.. ++.+-.+....+.++.
T Consensus       257 ~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  257 DILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence            77732      244567789999999887763332222221   3788888888877 7767777777777765

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.26  E-value=5.5  Score=39.37  Aligned_cols=133  Identities=11%  Similarity=0.088  Sum_probs=90.7

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC----CHH--HHHHHHHHHHHHhc
Q 009636           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED----YPQ--LQFEAAWALTNIAS  146 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~v~~Lv~ll~~~~----~~~--i~~~a~~~L~~l~~  146 (530)
                      ...+..++...+.+.++.|+-...+++.+.+-..  .+.+.+.-..+.+-+++.+.+    .|+  .+.-++.+|+.+|.
T Consensus        13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            3456667777778899999999999987754222  344667767888888887643    232  34556667777777


Q ss_pred             CChhhH--HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009636          147 GTSEHT--KVVIDHGAVPIFVKLLYS-PSD------DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (530)
Q Consensus       147 ~~~~~~--~~~~~~g~i~~L~~ll~~-~~~------~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~  211 (530)
                       .++..  ..++  +.||.|+.+++. .++      .+.+.|-.+|..+++..+. ...++..|.++.+.++-.
T Consensus        93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen   93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHh
Confidence             33322  2233  468999998865 222      3678888899999888664 456678899999987763

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.23  E-value=4.4  Score=40.50  Aligned_cols=233  Identities=14%  Similarity=0.074  Sum_probs=131.0

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      .++...+..|+.++.++++.-|+....+|.++-+.....|..+.. .+...+.+.+.......-...++..++.+..+..
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            344456788999999999999999999999987666656655443 3555666666555566677778888888887753


Q ss_pred             CCC-hhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          235 QPP-FDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       235 ~~~-~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                      .+- .....-....++.+..... .........++..+...++.....++     ..++..=-..+..-...-+.-+..+
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~el~~i  282 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNELEEI  282 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCchhHHHHHHHHHHH
Confidence            222 2233333345555655543 22334444455444444443333222     2222222223333334445556666


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc-----Cch
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN-----AEF  384 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~-----~~~  384 (530)
                      ....+...-.-+...+...+...+.+. +..|.+.|+....|      +.+-.++.   ..++|.+...+..     .+.
T Consensus       283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~  355 (409)
T PF01603_consen  283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN------EYFLSLISQNSRVILPIIFPALYRNSKNHWNQ  355 (409)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence            554332221223345677788888888 88888887765432      22222332   1256666666532     267


Q ss_pred             hHHHHHHHHHHHhhcC
Q 009636          385 DIKKEAAWAISNATSG  400 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~  400 (530)
                      .|+..|..++.-+...
T Consensus       356 ~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  356 TVRNLAQNVLKILMEM  371 (409)
T ss_dssp             THHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8999988888888775

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.22  E-value=1.2  Score=39.13  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=94.1

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      -++.+++...+++..++..|+..+.-++...=..|..      .+|.|+.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            4688888888999999999999999887654223333      5999999999988 99999999999999886555444


Q ss_pred             HHHhCCChHHHHHh---hCCCCH-HH---HHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-------CchhHH
Q 009636          154 VVIDHGAVPIFVKL---LYSPSD-DV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-------PKLSML  219 (530)
Q Consensus       154 ~~~~~g~i~~L~~l---l~~~~~-~i---~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-------~~~~~~  219 (530)
                      .-...| +..-..+   +..+.. ..   ....+..+..+...+...|..     ++..+++.+...       ....-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHH
Confidence            433333 2222222   221111 11   455556666666655555555     455666666322       133445


Q ss_pred             HHHHHHhhhhccCC
Q 009636          220 RNATWTLSNFCRGK  233 (530)
Q Consensus       220 ~~a~~~L~~L~~~~  233 (530)
                      ...+++..||+.-+
T Consensus       156 ~~~~Fla~nLA~l~  169 (187)
T PF12830_consen  156 DFLLFLAENLATLP  169 (187)
T ss_pred             HHHHHHHHHHhcCC
Confidence            55666666666553

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.20  E-value=1.6  Score=45.28  Aligned_cols=138  Identities=14%  Similarity=0.167  Sum_probs=95.0

Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCC
Q 009636          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~  316 (530)
                      ......++|.|...+++.+..+++.++..+..+++.-+.   ..++.-+++.|..+. .+.+..++..++-|++.++...
T Consensus       384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l  460 (700)
T KOG2137|consen  384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL  460 (700)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence            344578889888899999999999999999888766542   255567788887763 4567889999999999998322


Q ss_pred             chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      +..  .+  ...+..+....+.. ++.+......+..++....... ..++...++|.++.+...+..
T Consensus       461 D~~--~v--~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L  522 (700)
T KOG2137|consen  461 DKA--AV--LDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL  522 (700)
T ss_pred             HHH--Hh--HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence            211  11  12344455555566 8888877777777766532222 345566788988888766643

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.17  E-value=4.9  Score=37.49  Aligned_cols=208  Identities=14%  Similarity=0.111  Sum_probs=142.2

Q ss_pred             HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc---hhhHHHh--hcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQCVI--EYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       278 ~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~---~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      .+.+.++|++..++..+...+...+..++.+..|+....-   ..+...+  +..++..|+.--..  .+++--.+...+
T Consensus        72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~--~~~iaL~cg~ml  149 (342)
T KOG1566|consen   72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN--TPEIALTCGNML  149 (342)
T ss_pred             HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc--chHHHHHHHHHH
Confidence            3557788999999999999999999999999999875332   1111122  22344444444111  134433333334


Q ss_pred             HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC---ChHHHHhccCCCChHH
Q 009636          353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG---CIKPLCDLLVCPDPRI  429 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~i~~L~~lL~~~~~~~  429 (530)
                      ..+..+ +.....+....-+......+..+..++...|..++..+......-..+++..+.   ..+....++.+++.-+
T Consensus       150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt  228 (342)
T KOG1566|consen  150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVT  228 (342)
T ss_pred             HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence            433333 344455666777888888899999999999999999988764433344444321   2444677889999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636          430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                      ...++.+++.++...++...+        ...+.+...+..+..|+..+...++-.|..+...|-..
T Consensus       229 krqs~kllg~llldr~N~~~M--------~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVM--------TKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHH--------HHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence            999999999998777665432        45566666788888999999999999998888766543

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.02  E-value=6.2  Score=38.18  Aligned_cols=159  Identities=18%  Similarity=0.172  Sum_probs=115.1

Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHh-C-cHHHHHHHHhcC-----c--------hhHHHHHHH
Q 009636          329 LPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEA-N-IIGPLVALLENA-----E--------FDIKKEAAW  392 (530)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~-~i~~L~~ll~~~-----~--------~~v~~~a~~  392 (530)
                      ++.+...|... ...+...+...|..++. ........++.. + -.+.+-+++...     +        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            77888888888 77788888899999988 665666666642 1 133444444211     1        289999999


Q ss_pred             HHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009636          393 AISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI  471 (530)
Q Consensus       393 aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  471 (530)
                      .+..+...+++...+.+++ .+.+..+..-+...+++++..++.++..-+-..+......      -...|. ...+.+|
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~------K~~~fn-~~~L~~l  209 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRST------KCKLFN-EWTLSQL  209 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhh------hhhhcC-HHHHHHH
Confidence            9999999888888888775 4678889999999888999999999986443333322211      133343 4468888


Q ss_pred             HHHhcCCCH----HHHHHHHHHHHHhCC
Q 009636          472 ESLQTHDNA----EIYEKSVKLLETYWL  495 (530)
Q Consensus       472 ~~l~~~~~~----~v~~~a~~il~~~~~  495 (530)
                      ..|-+..++    .+.+.+...+..+..
T Consensus       210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  210 ASLYSRDGEDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             HHHhcccCCcccchHHHHHHHHHHHHhc
Confidence            888888888    999999999998865

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.99  E-value=6.3  Score=38.13  Aligned_cols=156  Identities=17%  Similarity=0.155  Sum_probs=109.9

Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHhHhhc-CCchhhHHHhhc-C-chHHHHHhhcCCC---c---------hhHHHHHHHH
Q 009636          287 FPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEY-Q-ALPCLLNLLSGNY---K---------KSIKKEACWT  351 (530)
Q Consensus       287 l~~L~~lL~~~~~~~~~~al~~L~nl~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~---~---------~~v~~~a~~~  351 (530)
                      +..+...|......+..++++.|..++. ........++.. + -.+.+.+++....   .         +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788888999998899999999999998 444566566533 1 2334444443210   1         2788887765


Q ss_pred             HHH-HhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---CHHHHHHHHHcCChHHHHhccCCCC
Q 009636          352 VSN-ITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGG---THEQIKFLVIQGCIKPLCDLLVCPD  426 (530)
Q Consensus       352 L~n-l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~i~~L~~lL~~~~  426 (530)
                      +.. +..+++.....++. .+.+..+.+-|..+++++....+.+|..-+...   .....-.+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            544 44477777777664 567888999898888999999999998544322   2233334456667888999888777


Q ss_pred             h----HHHHHHHHHHHHHHH
Q 009636          427 P----RIVTVCLEGLENILK  442 (530)
Q Consensus       427 ~----~~~~~al~~l~~ll~  442 (530)
                      +    .+...+-+.|..++.
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             CcccchHHHHHHHHHHHHhc
Confidence            7    788888888888774

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.95  E-value=4.9  Score=36.70  Aligned_cols=202  Identities=21%  Similarity=0.164  Sum_probs=117.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhH
Q 009636          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i  197 (530)
                      +|.|+.-+....++..+...+.+|..++.........     ++..|..+...+....+..+...+..+-...+..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            4555553444445999999999999999844223222     34566666766666666667777777765444211   


Q ss_pred             hhcCChHHHHHhh---------cCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHH
Q 009636          198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL  267 (530)
Q Consensus       198 ~~~~~i~~Ll~ll---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l  267 (530)
                         +.+..++..+         ..+...+.......++..+|...|.    ....+++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               3444444441         1122344555556788888888765    4566778888888 788888999999999


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCch-hhHHHhhcCchHHHHHhhcCC
Q 009636          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGN  339 (530)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~  339 (530)
                      ..++...--.+.     .....+.+-++.+ .+.+....+..++.+..+.-+ .........++..+.++..+.
T Consensus       147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            999843221111     2223344444433 334444444444433332211 111234456677777777665

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.92  E-value=4.9  Score=36.65  Aligned_cols=201  Identities=18%  Similarity=0.219  Sum_probs=112.8

Q ss_pred             HHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636          162 PIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (530)
Q Consensus       162 ~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  240 (530)
                      +.|+. .-+..+++.....+.+|..++.+...+...     ++..+..+. ..........+...+..+-... ...+  
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~-~r~f--   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAN-DRHF--   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhC-chHH--
Confidence            44444 334578899999999999999776212222     344455555 4444444444555555555442 2222  


Q ss_pred             hhchHHHHHHh--------hc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHH
Q 009636          241 VSPALPALAHL--------IH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTV  309 (530)
Q Consensus       241 ~~~~l~~L~~l--------l~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L  309 (530)
                        +.+..++..        ..  +...+.......++..++...++.     ...+++.+..+| .+.++.++..++..+
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence              223322222        01  112344455556777787766652     235677888888 788888999999999


Q ss_pred             hHhhcCCchhhHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhCcHHHHHHHHhcCch
Q 009636          310 GNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      ..++...      +++ ......+.+-+..+..+.+.+..|..+..+..+.- ..-.......++..+.+.....+.
T Consensus       147 ~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  147 APLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            9998322      221 13344555555555567777766655555554321 111222344566677776666553

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.91  E-value=6.6  Score=39.87  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~  317 (530)
                      ...+.+.+..++..+.+.|..|+..++..+..++..-.+ +...+-.|++..|.+-+-+.++.++..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            455678888888888999999999999999888765433 3445556888889888889999999999999998854322


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      ..-     ..+...|..+++.+.+.+||+.|..-+
T Consensus       165 nee-----n~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            111     123446777777765778888765443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.56  E-value=6.2  Score=41.15  Aligned_cols=175  Identities=15%  Similarity=0.122  Sum_probs=105.6

Q ss_pred             hhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009636          240 QVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~  318 (530)
                      .....+|.|...+...+ .++....+.-+.-|...-+   ..-+...+++.|..-+++.+..++..++..+...+..-+.
T Consensus       346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~  422 (700)
T KOG2137|consen  346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV  422 (700)
T ss_pred             hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH
Confidence            34556777777776433 2222222211111221111   1123347788888888999999999999999998875552


Q ss_pred             hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                         ..+..-++|.+..+........++..++-+++-+..    .++...-...+.++.+.....++.+......+..++.
T Consensus       423 ---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~  495 (700)
T KOG2137|consen  423 ---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA  495 (700)
T ss_pred             ---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence               345667888888876554477888998888888862    1111111123445555566678899888888888777


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009636          399 SGGTHEQIKFLVIQGCIKPLCDLLVCPD  426 (530)
Q Consensus       399 ~~~~~~~~~~l~~~~~i~~L~~lL~~~~  426 (530)
                      ..... . ..+....+++.+..+...+.
T Consensus       496 ~~~~~-g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  496 LIIYS-G-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hhccc-c-eeeehhhhhhhhhhhhhccc
Confidence            64321 1 23344566666666555443

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.66  E-value=1.7  Score=43.51  Aligned_cols=158  Identities=13%  Similarity=0.086  Sum_probs=110.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCChh
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~---~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      ....+.+.+.+++...+..|+..+..+...  ......++....+..|..++.+++   ...+...+++++..+-...- 
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            557889999999999999999998877433  456788898888999999998876   23444455555554443211 


Q ss_pred             hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636          151 HTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      ..-..+...+|.....+...  .+..+...|+..|-++...++..++.+.+.--+..|+..+ ...+..++..|...+..
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            11111122334444444422  3455677888889888888877888888888899999999 77788888888888888


Q ss_pred             hccCCCC
Q 009636          229 FCRGKPQ  235 (530)
Q Consensus       229 L~~~~~~  235 (530)
                      +....+.
T Consensus       240 l~~~a~~  246 (713)
T KOG2999|consen  240 LFRKAPD  246 (713)
T ss_pred             HHhhCCh
Confidence            8776644

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.64  E-value=1.7  Score=38.11  Aligned_cols=114  Identities=17%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             hCCCCchhHHHHHHHHhHhhcCCchhhHHHh----------------hcCchHHHHHhhcCCC-----chhHHHHHHHHH
Q 009636          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSGNY-----KKSIKKEACWTV  352 (530)
Q Consensus       294 L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L  352 (530)
                      +.+.+......++..|+|++.... ....++                ....+..|+..+..+.     ...--...+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            344555667778888888887433 222222                1236777777776611     234456788899


Q ss_pred             HHHhcCCHHHHHHHHH--hCc--HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009636          353 SNITAGNREQIQAVIE--ANI--IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI  411 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  411 (530)
                      +|++.. ++.++.+++  .+.  +..|+..+.+.+..-|.-++.+|.|++...  +.-.+|..
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~  142 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLS  142 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcC
Confidence            999765 677777774  234  788888888887777888899999999853  44455543

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.62  E-value=1.6  Score=38.29  Aligned_cols=123  Identities=13%  Similarity=0.092  Sum_probs=77.9

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHH---------------HHhCcHHHHHHhhCC------CCchhHHHHHHHHhHhhc
Q 009636          256 DDEVLTDACWALSYLSDGTNDKIQAV---------------IEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       256 d~~v~~~a~~~l~~l~~~~~~~~~~~---------------~~~~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~  314 (530)
                      +......++..|+|++.........+               .+...+..|+.++..      +...-......++.|++.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            34445566777778776544322111               112356777777655      234456678889999987


Q ss_pred             CCchhhHHHhhc--Cc--hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHHHHHHh
Q 009636          315 GDDMQTQCVIEY--QA--LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPLVALLE  380 (530)
Q Consensus       315 ~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~  380 (530)
                       .+..++.+++.  +.  +..|+..+.+. +..-|.-++.+|.|+|.....+-..+-.  .+++|.|+--+.
T Consensus        88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             -CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence             45556666643  34  78888888887 7767778889999999876555333332  356666665554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.57  E-value=3.8  Score=42.45  Aligned_cols=229  Identities=13%  Similarity=0.072  Sum_probs=131.6

Q ss_pred             hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC---CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc--c
Q 009636          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS--D  272 (530)
Q Consensus       198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~--~  272 (530)
                      ++.|+++.++.....-+...+....-.+|+.+....   .........-.-|.|...|+..+..|+.+|+..+.++-  .
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            455677766665433333344444444555554433   11112222334466777888899999999999998875  2


Q ss_pred             CCh---HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh----hcCCCchhHH
Q 009636          273 GTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL----LSGNYKKSIK  345 (530)
Q Consensus       273 ~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l----L~~~~~~~v~  345 (530)
                      +++   +....+++ .-...+.++|.++-+.++..|..-++.+...    ...++...++..++..    +..+...+||
T Consensus       206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR  280 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVR  280 (1005)
T ss_pred             CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence            222   22333343 3457899999999999999998888777642    2234444433333333    3333255788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009636          346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP  425 (530)
Q Consensus       346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~  425 (530)
                      ......|..++.....  -.+++ -++|.|-..|.+....||..+...|..+-...   . ..+..---.+.++.-|...
T Consensus       281 ~svf~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr---a-~~f~~I~~~d~~l~~L~~d  353 (1005)
T KOG1949|consen  281 CSVFKGLPMILDNPLS--HPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR---A-AKFWKICPMDHILVRLETD  353 (1005)
T ss_pred             hhHhcCcHHHHcCccc--hhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh---h-hhhhccccHHHHHHHHhcc
Confidence            8888888888764221  12222 24566667778888899998888887774421   1 1112222244455555555


Q ss_pred             ChHHHHHHHHHHH
Q 009636          426 DPRIVTVCLEGLE  438 (530)
Q Consensus       426 ~~~~~~~al~~l~  438 (530)
                      +..+....+..|.
T Consensus       354 ~~~v~rr~~~li~  366 (1005)
T KOG1949|consen  354 SRPVSRRLVSLIF  366 (1005)
T ss_pred             ccHHHHHHHHHHH
Confidence            5554444444333

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=1.7  Score=40.28  Aligned_cols=146  Identities=16%  Similarity=0.170  Sum_probs=102.6

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009636          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~  321 (530)
                      ...+...+..|.+.|.+...+.+..+..++....+.....+. .++-.+++-+++....+-..||.+++.|...-.....
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555667788888889999999999998776654444444 5667778888888889999999999999875554433


Q ss_pred             HHhhcCchHHHHHhhcC-C-C-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636          322 CVIEYQALPCLLNLLSG-N-Y-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~~-~-~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                      ..     +..++..|.+ . + +.-|+..|-.+|..+..+-..+       .+++.|+..+....+.++..++.++.+..
T Consensus       166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            32     2233333322 1 1 4568888889998887643221       36677888888889999999988887776


Q ss_pred             cC
Q 009636          399 SG  400 (530)
Q Consensus       399 ~~  400 (530)
                      ..
T Consensus       234 ~r  235 (334)
T KOG2933|consen  234 IR  235 (334)
T ss_pred             ee
Confidence            54

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.41  E-value=1.3  Score=47.18  Aligned_cols=136  Identities=20%  Similarity=0.238  Sum_probs=80.4

Q ss_pred             chHHHHHHhhcC----CChhHHHHHHHHHHHhccC---Ch------HHHHHHHHhCcHHHHHHhhC----CCCchhHHHH
Q 009636          243 PALPALAHLIHS----NDDEVLTDACWALSYLSDG---TN------DKIQAVIEAGVFPRLAEFLM----HPSPSVLIPA  305 (530)
Q Consensus       243 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~---~~------~~~~~~~~~~~l~~L~~lL~----~~~~~~~~~a  305 (530)
                      ..+..+..++.+    .++.+...++.+++.+...   ..      ......+...+++.+...+.    ..+...+..+
T Consensus       431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  510 (618)
T PF01347_consen  431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY  510 (618)
T ss_dssp             HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence            344445555543    3456777777777776522   10      00011122245566665554    4566778889


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-
Q 009636          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-  382 (530)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-  382 (530)
                      +++|||+..  +         ..++.|..++...  ....+|..|+|+|..++...++.        +.+.|+.++.+. 
T Consensus       511 LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~  571 (618)
T PF01347_consen  511 LKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTT  571 (618)
T ss_dssp             HHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TT
T ss_pred             HHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCC
Confidence            999999964  1         3466677777654  25789999999999997766654        445667776554 


Q ss_pred             -chhHHHHHHHHHHHh
Q 009636          383 -EFDIKKEAAWAISNA  397 (530)
Q Consensus       383 -~~~v~~~a~~aL~nl  397 (530)
                       +.++|..|..+|...
T Consensus       572 e~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  572 EDPEVRIAAYLILMRC  587 (618)
T ss_dssp             S-HHHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHhc
Confidence             688999888777653

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.41  E-value=30  Score=41.35  Aligned_cols=264  Identities=13%  Similarity=0.067  Sum_probs=138.8

Q ss_pred             CCChHHHHHHHHHHHHhhcCCC--CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009636           84 SNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  161 (530)
                      +.+..+...|+..|++++...-  .+....-.+..++..|..++....+.+++...+.|+.++......    -+.+| =
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSG-W 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSG-W 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcC-c
Confidence            3456788889998888765421  111111224456788888777665689999999999998873222    22334 3


Q ss_pred             HHHHHhh----CCCCHHHHHHHHHHHHhhhCCCchh-----hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh---
Q 009636          162 PIFVKLL----YSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF---  229 (530)
Q Consensus       162 ~~L~~ll----~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L---  229 (530)
                      +.+..++    ...++.+...|..++..|+.+.-..     ...+.  .++..+........+.++--.|+..|+++   
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            3333443    3467888888988888876442110     01111  13344444443333344444444444433   


Q ss_pred             -ccCC----------C--------------C-----CChhhhhchHHH---HHHhhcCCChhHHHHHHHHHHHhccC---
Q 009636          230 -CRGK----------P--------------Q-----PPFDQVSPALPA---LAHLIHSNDDEVLTDACWALSYLSDG---  273 (530)
Q Consensus       230 -~~~~----------~--------------~-----~~~~~~~~~l~~---L~~ll~~~d~~v~~~a~~~l~~l~~~---  273 (530)
                       +...          .              .     ........-+|.   |..+...+..+|+..|+.+|..+...   
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence             1110          0              0     000001223344   44445567899999999988776532   


Q ss_pred             --ChHHHHHHHHhCcHHHHHHhhCCC-------------------C-----c--hhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636          274 --TNDKIQAVIEAGVFPRLAEFLMHP-------------------S-----P--SVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       274 --~~~~~~~~~~~~~l~~L~~lL~~~-------------------~-----~--~~~~~al~~L~nl~~~~~~~~~~~~~  325 (530)
                        +.+.-..++. +++-.++..++..                   +     |  .....|++.+..+....-..... +-
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L 1458 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LL 1458 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence              2222233333 4555555444310                   0     1  12233444444444322111111 22


Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      .+++..|..++..+ +..+-+.++.+|.++..
T Consensus      1459 ~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1459 KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            35566666666666 77888888888888876

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.40  E-value=5.4  Score=44.64  Aligned_cols=113  Identities=14%  Similarity=0.151  Sum_probs=57.8

Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC----------------CCChHHHHHHHHHHH
Q 009636          375 LVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV----------------CPDPRIVTVCLEGLE  438 (530)
Q Consensus       375 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~----------------~~~~~~~~~al~~l~  438 (530)
                      |.++..++-++||..|+.++..+............++.-+...+..+|+                ....+.....+.++.
T Consensus      1002 L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIa 1081 (1610)
T KOG1848|consen 1002 LADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIA 1081 (1610)
T ss_pred             HHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHH
Confidence            3344444455666666666655554222122222222223333344443                222334455666666


Q ss_pred             HHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          439 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       439 ~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      +++...-+.-.    ..|.+....++.  ++.+..+..+.++++.-.|...+++.
T Consensus      1082 klf~e~fk~ll----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1082 KLFSENFKLLL----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred             HHHHHHHHHHH----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHH
Confidence            66644322211    133345444432  56677777889999988888887774

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.38  E-value=0.55  Score=35.53  Aligned_cols=73  Identities=18%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      .+...+..+.++.+.+|-.|+..|++++... +  ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence            5678888899999999999999999999774 3  111112567888889999988 89999999999999985554

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.37  E-value=0.46  Score=39.47  Aligned_cols=75  Identities=16%  Similarity=0.211  Sum_probs=60.4

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~  492 (530)
                      ++..|..-+.+.++.++..++..|..+++.+..          .|...+...+.++.|..+... .++.|++++..+|+.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~----------~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~  107 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK----------RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ  107 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH----------HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence            566777777889999999999999999987644          256667777888888888666 899999999999999


Q ss_pred             hCCCCC
Q 009636          493 YWLDDE  498 (530)
Q Consensus       493 ~~~~~~  498 (530)
                      |-....
T Consensus       108 W~~~f~  113 (144)
T cd03568         108 WADEFK  113 (144)
T ss_pred             HHHHhC
Confidence            855443

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=92.36  E-value=10  Score=38.11  Aligned_cols=262  Identities=11%  Similarity=0.068  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch-hhh--hHhhcCChHHH
Q 009636          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CRD--LVLSQGGLVPL  206 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~-~~~--~i~~~~~i~~L  206 (530)
                      +.+.....+++..+-.+-......+++. ++..+....++ .++..-.....+|+.+...... ...  .-++...+|++
T Consensus        44 eylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f  122 (435)
T PF03378_consen   44 EYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF  122 (435)
T ss_dssp             HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence            4555555555555444333333333321 23333333444 4566655555566555432111 111  12344467777


Q ss_pred             HHhhcCCCchhHHHHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009636          207 LAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA  284 (530)
Q Consensus       207 l~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~  284 (530)
                      ..+| ...-.+..-++...++.|.+..+ .........++|.|+.-.- .....+ -...+.|..........+   ...
T Consensus       123 ~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~~  197 (435)
T PF03378_consen  123 QEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VAN  197 (435)
T ss_dssp             HHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-------
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cch
Confidence            7777 44556777777777777776654 2222233444444432211 111111 222223322222211111   111


Q ss_pred             ----CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CC
Q 009636          285 ----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GN  359 (530)
Q Consensus       285 ----~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~  359 (530)
                          +++...-+++.+...+  ..+...|..+....+...-.-.-..++..++.-|++.......+.-+..++.++. .+
T Consensus       198 ~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g  275 (435)
T PF03378_consen  198 NQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYG  275 (435)
T ss_dssp             S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcC
Confidence                2333334455554322  4466677777655443210001124556666666655456666666666666654 34


Q ss_pred             HHHHHHHHH---hCcHHHHHHH--H---hc-CchhHHHHHHHHHHHhhcC
Q 009636          360 REQIQAVIE---ANIIGPLVAL--L---EN-AEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       360 ~~~~~~l~~---~~~i~~L~~l--l---~~-~~~~v~~~a~~aL~nl~~~  400 (530)
                      ++..-..++   .|+...++.-  +   .. ..+.-|+-++.+++++...
T Consensus       276 ~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  276 PDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            444433332   4555555542  1   11 1233466666667776653

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.31  E-value=9.8  Score=38.39  Aligned_cols=165  Identities=12%  Similarity=0.069  Sum_probs=112.2

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhcCCchhh
Q 009636          245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVTGDDMQT  320 (530)
Q Consensus       245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~----~~~~~al~~L~nl~~~~~~~~  320 (530)
                      ...+...+.+++...+..++..+..++... .....++....+..|.+++.++..    .+...++++++.+....- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            345666777777776677888888877544 456778888889999999988653    455666666666654222 11


Q ss_pred             HHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          321 QCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      ...+...++.....+..-. .+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+..
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            1122223333344443221 145677788888888888887777777777789999999999999999998888888887


Q ss_pred             CCCHHHHHHHHH
Q 009636          400 GGTHEQIKFLVI  411 (530)
Q Consensus       400 ~~~~~~~~~l~~  411 (530)
                      .+.++.++.+.+
T Consensus       243 ~a~~~~R~~~~~  254 (713)
T KOG2999|consen  243 KAPDDKRFEMAK  254 (713)
T ss_pred             hCChHHHHHHHH
Confidence            776665555443

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.25  E-value=13  Score=36.89  Aligned_cols=191  Identities=19%  Similarity=0.252  Sum_probs=116.2

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCc---hhhhhHhhcCChHHHHHhhc------CCCchhHHHHHHHHhhhhccCC
Q 009636          163 IFVKLLYSPSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGLVPLLAQLN------GQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~---~~~~~i~~~~~i~~Ll~ll~------~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .+..++...+.+-+-.++.....++...+   ..++.+.+.-+.+.+-+++.      +.++.-.+..++..|..+|+..
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35556666666667777777778775443   23445666555666666663      2235556667788899999987


Q ss_pred             CCCChhhhhchHHHHHHhhcCC-Chh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchh-HHHH
Q 009636          234 PQPPFDQVSPALPALAHLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV-LIPA  305 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~-d~~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~-~~~a  305 (530)
                      .-......-.-+|.|..++... |++      +..++..++..++..... .+.++..|.++.+.++-.-.+... ..-+
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            6555566667788888888643 333      778888899888877544 466888899999998755443322 2223


Q ss_pred             HHHHhHhhcCCchhh---HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          306 LRTVGNIVTGDDMQT---QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       306 l~~L~nl~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      +.++--...+.+...   ..+.  .++..+..=+... +...+.+.|..|+.+..
T Consensus       174 l~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence            333332332222111   1111  1133333333444 56678899999987655

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.17  E-value=1.3  Score=37.85  Aligned_cols=112  Identities=18%  Similarity=0.179  Sum_probs=79.9

Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CC
Q 009636          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GN  359 (530)
Q Consensus       285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~  359 (530)
                      ..+.++..+|.+.++.-+..++..+..++..++..  .+.+  ...+..++.+|+....+.+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            56678899999999989999999998888765322  2322  34688888999887567888999999999875   45


Q ss_pred             HHHHHHHHH---hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636          360 REQIQAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       360 ~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      ++..+.+..   .++++.++.+++.  ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            554555443   2356666666654  46777788888777663

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.14  E-value=29  Score=40.70  Aligned_cols=274  Identities=14%  Similarity=0.133  Sum_probs=143.9

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChh
Q 009636          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFD  239 (530)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~  239 (530)
                      +..+..-+..+++..+..+..+++.++..-+..  . .-.+..+.+++-+....|+-.+..-..++..+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            344455555678888888888888888543321  1 112245566677756667766767777777777775 233334


Q ss_pred             hhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc---hhHH------------
Q 009636          240 QVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP---SVLI------------  303 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~~~~------------  303 (530)
                      .....+..+..+..++ ++.|+..++.++..+.+.........+. -.+..+..+|-+..+   ++..            
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            4456677777776655 5699999999999988665433333333 233444444433221   1111            


Q ss_pred             -HHHHHHhHhhcCCch-hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009636          304 -PALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (530)
Q Consensus       304 -~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  381 (530)
                       ....++|+=..++.. ..-..+..-.+-...-++.++ ++.++.++..++-++-...+.+...   .-+++.|+.++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence             122233332222221 111112222333344445555 8888888888888876543332211   1245666666655


Q ss_pred             CchhHHHHHHHHHHHhhcCCCHHHHH----------------H-HH-HcCChHHHHhccC-CCChHHHHHHHHHHHHHHH
Q 009636          382 AEFDIKKEAAWAISNATSGGTHEQIK----------------F-LV-IQGCIKPLCDLLV-CPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       382 ~~~~v~~~a~~aL~nl~~~~~~~~~~----------------~-l~-~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~  442 (530)
                      .-.-.|.....++..+......+.+.                . .. +.|.=-.+..+++ ..|.+++..+++.+.+++.
T Consensus      1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred             hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            44334444444444433322111100                0 11 2333333444454 4466677777777777543

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.08  E-value=2.6  Score=42.58  Aligned_cols=99  Identities=18%  Similarity=0.160  Sum_probs=72.0

Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 009636          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQ  362 (530)
Q Consensus       285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~  362 (530)
                      |++..++.-+.+.+..++..++.+|+.++..-.+ .+..+-.+++..|.+-+-+. .+.||.+|..+|+.+-.  +++++
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence            7778888888889999999999999988753332 33455567788888877777 89999999999999865  34443


Q ss_pred             HHHHHHhCcHHHHHHHHhcC-chhHHHHHHH
Q 009636          363 IQAVIEANIIGPLVALLENA-EFDIKKEAAW  392 (530)
Q Consensus       363 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~  392 (530)
                             .+...|..+++.+ +.+||..|+.
T Consensus       169 -------~~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         169 -------RIVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             -------HHHHHHHHHHhcCcHHHHHHHHHH
Confidence                   2334555566544 5678876643

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.95  E-value=13  Score=36.41  Aligned_cols=132  Identities=12%  Similarity=0.113  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH-h--cCchhHHHHHHHHHHHhhcCCCH-----------HHHH
Q 009636          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL-E--NAEFDIKKEAAWAISNATSGGTH-----------EQIK  407 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~--~~~~~v~~~a~~aL~nl~~~~~~-----------~~~~  407 (530)
                      ..-|..|+..|..++.........++. +.+..++.-. .  ..+++-+..|+..++.++..+..           -...
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            456778888888888654444433332 1233332211 1  23678899999999999886521           0345


Q ss_pred             HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009636          408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  487 (530)
Q Consensus       408 ~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~  487 (530)
                      .+....+++.|. --.+..|-++..|++.+..+-...+..             .+  .+.+..+.....+++.-|+..|.
T Consensus       304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-------------~l--~~~~~~l~~~L~~~~~vv~tyAA  367 (370)
T PF08506_consen  304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-------------QL--LQIFPLLVNHLQSSSYVVHTYAA  367 (370)
T ss_dssp             HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-------------HH--HHHHHHHHHHTTSS-HHHHHHHH
T ss_pred             HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-------------HH--HHHHHHHHHHhCCCCcchhhhhh
Confidence            555666666665 222455667777777666554443321             11  34567888888999999998887


Q ss_pred             HHH
Q 009636          488 KLL  490 (530)
Q Consensus       488 ~il  490 (530)
                      ..|
T Consensus       368 ~~i  370 (370)
T PF08506_consen  368 IAI  370 (370)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.93  E-value=1.9  Score=36.87  Aligned_cols=116  Identities=12%  Similarity=0.120  Sum_probs=79.3

Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcC--
Q 009636          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPLVALLENA-EFDIKKEAAWAISNATSG--  400 (530)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~--  400 (530)
                      ......+..+|++. ++.-|..++..+.-.+..++.  ..+.+  ...+..|+.+++.. .+.+++.++.++..+...  
T Consensus        24 ~~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~  100 (165)
T PF08167_consen   24 HKLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR  100 (165)
T ss_pred             HHHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            35667788899888 888888888888887765422  12222  23678888888876 467888888888888752  


Q ss_pred             CCHHHHHHHHHc---CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636          401 GTHEQIKFLVIQ---GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       401 ~~~~~~~~l~~~---~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      +.++..+.+...   +++..++.+++.  ......++++|..++...+.
T Consensus       101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            244544444432   345556665554  56777899999999987765

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=91.77  E-value=14  Score=38.16  Aligned_cols=290  Identities=13%  Similarity=0.157  Sum_probs=152.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..+=+.+.++++.+.--|+-.+.-..++-.++ +     .-++..|.+.+++++ ..++..|+.-|+-.-+++  +++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            4445555566666666655554444222221110 1     123455677777777 677777777776655533  222


Q ss_pred             HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          154 VVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      .+.     ..|..++.+.  ..++...|..+|+.+...+..  .. +...+++.++..-.........+.....|.-+.-
T Consensus       487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~d-vts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--ED-VTSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hH-HHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            222     1455556553  345777777777777643321  11 1122455555543222234444554445554444


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---chhHHHHHHH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIPALRT  308 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~~~~~al~~  308 (530)
                      +..        ..+...+..+..-...+...+-..+..++.....+.-.+-+    ..+..+.....   ......|+.-
T Consensus       559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg  626 (878)
T KOG2005|consen  559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG  626 (878)
T ss_pred             ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence            432        11222222222222223322222222222111111110000    12222222211   1223356666


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      ++-++.+.+-..+.     .+..+-.+|..+ ++.+|+..-.+++-++..+|..       +++..|-+...+.|.++..
T Consensus       627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~  693 (878)
T KOG2005|consen  627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM  693 (878)
T ss_pred             hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence            66666666544433     355677888888 9999999999999998877653       5788999999999999999


Q ss_pred             HHHHHHHHhhcCCCHHH
Q 009636          389 EAAWAISNATSGGTHEQ  405 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~  405 (530)
                      .++.+++-+-.+.+...
T Consensus       694 naIfamGLiGAGTnNAR  710 (878)
T KOG2005|consen  694 NAIFAMGLIGAGTNNAR  710 (878)
T ss_pred             HHHHHhccccCCcchHH
Confidence            99999998877654433

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=91.68  E-value=11  Score=34.95  Aligned_cols=222  Identities=13%  Similarity=0.098  Sum_probs=131.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (530)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~  240 (530)
                      ..|-..|.++++.+|..|+.+|+.+...-+..   .+...-+..|+..+.+ -.|......++.++..|.... ......
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence            34556778889999999999999888665521   1222234555554421 135556666677777777443 222222


Q ss_pred             hhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCc
Q 009636          241 VSPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       241 ~~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~~~  317 (530)
                      ...++..+.+-..  +.-...+..+...+..+........+ -...+++..+++.+..+ +|.....+...+..+...-+
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            3334444433222  22356777788888888766443332 22336778888888764 67777777777777765433


Q ss_pred             hhhHHHhhcCchHHHHHhhcC--------CC-ch-h-HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009636          318 MQTQCVIEYQALPCLLNLLSG--------NY-KK-S-IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~--------~~-~~-~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  386 (530)
                      .       ....+.+...+..        +. ++ . .+..-...|.+....++..     ..-.+|.|++-|.++.+.+
T Consensus       157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~  224 (262)
T PF14500_consen  157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSV  224 (262)
T ss_pred             c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHH
Confidence            1       2233334444321        11 22 1 2334444555554444432     2247899999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 009636          387 KKEAAWAISNATSG  400 (530)
Q Consensus       387 ~~~a~~aL~nl~~~  400 (530)
                      +..++.+|..++..
T Consensus       225 K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  225 KLDSLQTLKACIEN  238 (262)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=91.67  E-value=23  Score=38.57  Aligned_cols=115  Identities=16%  Similarity=0.167  Sum_probs=70.6

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhc
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL  450 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~  450 (530)
                      +-..+...+..+++.+-...+.++.++..-......+   ...-++.-..-.+..-..+...+..+|.++....+     
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~-----  513 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP-----  513 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----
Confidence            3445666666777888888888888887642111100   00011111111111112234444555555555533     


Q ss_pred             CCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 009636          451 GNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       451 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~  498 (530)
                           .....++.+.+....+-.+.-|+++++|+.|.+++...|+.+.
T Consensus       514 -----~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~  556 (727)
T PF12726_consen  514 -----SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG  556 (727)
T ss_pred             -----HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence                 3367888889999999999999999999999999999997433

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=91.67  E-value=1.2  Score=36.79  Aligned_cols=74  Identities=9%  Similarity=-0.054  Sum_probs=61.4

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHHhh
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll~~~  444 (530)
                      .+..+.+-+.++++.++..|+..|-.++.++...+...+.+.+++..|+.++..      .++.|+..++..+...-...
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            566777788899999999999999999998888888888888999999999953      46789988888777665443

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=91.64  E-value=4.8  Score=34.89  Aligned_cols=144  Identities=14%  Similarity=0.192  Sum_probs=89.7

Q ss_pred             hHHHHHHHHhHhhcCCchhh-----HHHh-h-----cCc-hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009636          301 VLIPALRTVGNIVTGDDMQT-----QCVI-E-----YQA-LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE  368 (530)
Q Consensus       301 ~~~~al~~L~nl~~~~~~~~-----~~~~-~-----~~~-l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (530)
                      +|..|+.+|..++...+...     ..++ +     .+. .+.+-.++.++ ++.+|..|+.++..+..+........-+
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            57777888877776522110     1111 1     122 33344445556 9999999999999999886554443321


Q ss_pred             h-------------------CcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChH
Q 009636          369 A-------------------NIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR  428 (530)
Q Consensus       369 ~-------------------~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~  428 (530)
                      .                   .+...|+..+..+ +..+....+.++..++.....+..+.=+-..++..+..++.+.|++
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            1                   1234455555554 6778888999999998875433322101112345566677789999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 009636          429 IVTVCLEGLENILKVGE  445 (530)
Q Consensus       429 ~~~~al~~l~~ll~~~~  445 (530)
                      ++..++.+++.++...+
T Consensus       161 v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999998876544

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=91.29  E-value=3.6  Score=35.62  Aligned_cols=141  Identities=18%  Similarity=0.134  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHhcC-Chh----hHHHHHh------CCCh-HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh-
Q 009636          133 LQFEAAWALTNIASG-TSE----HTKVVID------HGAV-PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-  199 (530)
Q Consensus       133 i~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i-~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~-  199 (530)
                      +|..|+.+|..++.. ++.    ....++-      .+.- +.+.-++.++++.+|..|+.+|..+..+...+-...-+ 
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777764 111    1111111      1122 33444556788999999999999887554322111110 


Q ss_pred             ------------------cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC--hhhhhchHHHHHHhhcCCChhH
Q 009636          200 ------------------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEV  259 (530)
Q Consensus       200 ------------------~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v  259 (530)
                                        ...-..|+..+....+..+...++.++..|....|...  ......++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence                              11233455556566688888999999999998875433  3445666777777888999999


Q ss_pred             HHHHHHHHHHhccC
Q 009636          260 LTDACWALSYLSDG  273 (530)
Q Consensus       260 ~~~a~~~l~~l~~~  273 (530)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999998887654

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.98  E-value=1.4  Score=38.68  Aligned_cols=141  Identities=13%  Similarity=0.152  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHH
Q 009636           90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVPIF  164 (530)
Q Consensus        90 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L  164 (530)
                      ...|+..|.-++|.  .+....+++..+--.+..+|...+    ..-++..++.+++.+...+ .+....+....++|..
T Consensus       117 vcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         117 VCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            34566666666654  333334445443223345554332    3467888999999998844 5666667778999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-------CChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-------~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ++++...++.-+..++.++..+.+++......+...       .++..++..+-+.....+.+.++.+-..||..
T Consensus       195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            999999888889999999999998876544332211       12233333332445566677777776666655

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=90.93  E-value=1.9  Score=37.77  Aligned_cols=93  Identities=12%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC---------CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhH
Q 009636          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---------CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT  459 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---------~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~  459 (530)
                      ..+..|.-.....+...++.|++.|++..|+++|.         ..+......++.|+..++.....           ..
T Consensus        83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G-----------~~  151 (187)
T PF06371_consen   83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYG-----------LE  151 (187)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHH-----------HH
T ss_pred             HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHH-----------HH
Confidence            33344444444445677888888888888888774         24557888899999888865533           46


Q ss_pred             HHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009636          460 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET  492 (530)
Q Consensus       460 ~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~  492 (530)
                      ..+...+++..|.....+++..++..|.+++.-
T Consensus       152 ~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~  184 (187)
T PF06371_consen  152 AVLSHPDSVNLIALSLDSPNIKTRKLALEILAA  184 (187)
T ss_dssp             HHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            677788999999999999999999999999864

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=90.90  E-value=2.8  Score=35.60  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009636          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (530)
                      .+++.|+.+|+.+.+..+|.++..+||.|.+-+|...+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k   47 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK   47 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence            46778888898886789999999999999886655443

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=90.83  E-value=1.3  Score=33.55  Aligned_cols=77  Identities=9%  Similarity=0.095  Sum_probs=57.9

Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009636          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF  408 (530)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  408 (530)
                      +...+..+.++ .+.+|..+...|..+.....  ....--.+++..+...+.++|+-|-..|+.+|..++..........
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence            45566777777 88899999999999988544  1112224678888889999999999999999999998644334333

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=90.63  E-value=11  Score=34.87  Aligned_cols=214  Identities=18%  Similarity=0.128  Sum_probs=118.5

Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcCCC--CC-cHHHHH-----------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009636           79 VAGVWSNDSGVQYECTTQFRKLLSIER--SP-PIEEVI-----------RSGVVPRFVEFLLREDYPQLQFEAAWALTNI  144 (530)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~--~~-~~~~~~-----------~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l  144 (530)
                      +.+|.+..+..-..|+..+.+++..-+  .+ ..+.+.           -.|+.+.+++=+.++.   ....++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            456677777777788888887776532  11 111111           1233333333333333   345556666666


Q ss_pred             hcCC-------hhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-
Q 009636          145 ASGT-------SEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-  212 (530)
Q Consensus       145 ~~~~-------~~~~~~~~~~g~i~~L~~ll~~~~----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-  212 (530)
                      +.-.       ++.+-.+.-.+.+|.++..+.+++    ......++..|+.+|....        ...+..++....+ 
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            5521       212222222345677777777765    1344556678888873321        1233444444422 


Q ss_pred             --CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009636          213 --QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (530)
Q Consensus       213 --~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L  290 (530)
                        ....+....++..+..-..  |    ......+-.|+.++.+.-+.++..++..|..+...-+-...  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence              2234455555544443221  1    12345667788899888899999999999888765432222  445688889


Q ss_pred             HHhhCCCCchhHHHHHHHHhHhhc
Q 009636          291 AEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       291 ~~lL~~~~~~~~~~al~~L~nl~~  314 (530)
                      .+++.++.+   ..|+.++-++..
T Consensus       234 lrlL~t~~~---~eAL~VLd~~v~  254 (262)
T PF14225_consen  234 LRLLQTDLW---MEALEVLDEIVT  254 (262)
T ss_pred             HHHhCCccH---HHHHHHHHHHHh
Confidence            999987754   455555554443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=90.47  E-value=21  Score=38.06  Aligned_cols=196  Identities=17%  Similarity=0.112  Sum_probs=106.9

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhCCCch
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~  192 (530)
                      .+..+.+++.+..  --..+|++.|..+......-...     .+..+..++.+    .++.++..|+.+++.+......
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            3556667777644  12233555555554422122222     24556666654    4567888888888887631100


Q ss_pred             ---------hhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC---Ch
Q 009636          193 ---------CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DD  257 (530)
Q Consensus       193 ---------~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~---d~  257 (530)
                               ..........++.+...+.   ...+..-+..++.+|.|+-.          ...++.+...+...   +.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence                     1111222335666666664   34566778888999999853          34677888877765   67


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh
Q 009636          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (530)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  335 (530)
                      .++..|++++..+....+..+        .+.+++++.+  .+.++|..|+.+|...   ++..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence            899999999998876665433        3556666655  3466888877665432   2222       235566677


Q ss_pred             hcCCCchhHHHH
Q 009636          336 LSGNYKKSIKKE  347 (530)
Q Consensus       336 L~~~~~~~v~~~  347 (530)
                      +..+.+..|...
T Consensus       601 l~~E~~~QV~sf  612 (618)
T PF01347_consen  601 LWNEPSNQVASF  612 (618)
T ss_dssp             HTT-S-HHHHHH
T ss_pred             HhhCchHHHHHH
Confidence            766534555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.35  E-value=28  Score=37.17  Aligned_cols=151  Identities=13%  Similarity=0.046  Sum_probs=74.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCC--CCHHHHHHHHHHHHhhhCCCchhh
Q 009636          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYS--PSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~--~~~~i~~~a~~~L~nl~~~~~~~~  194 (530)
                      +..+-+-|.-+|...-+..|+..+..++.........++.. .+..+++ +..+  .++.-.+.++..+..++......+
T Consensus       363 leYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~  441 (960)
T KOG1992|consen  363 LEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK  441 (960)
T ss_pred             HHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence            33333344433422345667777777877554444444432 2333333 2222  455667778888777775432221


Q ss_pred             hhHhhc----CChHHHH----HhhcC---CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHH
Q 009636          195 DLVLSQ----GGLVPLL----AQLNG---QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDA  263 (530)
Q Consensus       195 ~~i~~~----~~i~~Ll----~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a  263 (530)
                      .-+...    +.+..+.    .-|..   ...+-++..++.   .+..............++|.++.+++.+..-+-.+|
T Consensus       442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIK---y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYA  518 (960)
T KOG1992|consen  442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIK---YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYA  518 (960)
T ss_pred             cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccc---eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHH
Confidence            111111    1111111    11211   112222222222   222222233344556789999999999988899999


Q ss_pred             HHHHHHhcc
Q 009636          264 CWALSYLSD  272 (530)
Q Consensus       264 ~~~l~~l~~  272 (530)
                      +.++-.+..
T Consensus       519 A~aiEkil~  527 (960)
T KOG1992|consen  519 AIAIEKLLT  527 (960)
T ss_pred             HHHHHhccc
Confidence            999876653

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.17  E-value=27  Score=36.63  Aligned_cols=189  Identities=15%  Similarity=0.049  Sum_probs=114.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-h----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009636          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGT-S----EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~-~----~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  192 (530)
                      =|.|..-|+-.+ ..+|..|+..+.++---. +    +..+.+++.. ...+-.+|+++.+.+|..|+..++.+.+.-..
T Consensus       176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe  253 (1005)
T KOG1949|consen  176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFWE  253 (1005)
T ss_pred             hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            344555666677 899999999999876421 2    3344444432 56788899999999999998888777543211


Q ss_pred             hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                      .-..-.-...+..+..-+..++..+++......|..+..++  ........++|.+-..+......|+..+...|..+-.
T Consensus       254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            10000001123333333334556688888888888888764  2233446677777778888888898888877776633


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009636          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (530)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~  313 (530)
                      ..-   ..+.+---.+.++..|..++..+....+..+-+.+
T Consensus       332 vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  332 VRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             hhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            221   11222222445556666666555555444444443

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=89.53  E-value=18  Score=33.66  Aligned_cols=222  Identities=14%  Similarity=0.074  Sum_probs=122.8

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC--CCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR--EDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~--~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      |=..|.++|+..|..|+..|..++..-....    ....-+..|++++.+  .+ ......++..+..+..... .....
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~-~~~~~   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKN-FSPES   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcC-CChhh
Confidence            3356789999999999999999987632111    111124444444332  23 3444444666666664221 11111


Q ss_pred             HhCCChHHHHHhhC--CCCHHHHHHHHHHHHhhhCCCchhhhhHh--hcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          156 IDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVL--SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       156 ~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~--~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                       ...++..+.+-..  +.....|..+...+..+.....   ..+.  ..+++..+++.+....|+...-.+...+..+..
T Consensus        78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence             0112233333221  2335567778888887765432   2222  234677888888777788888888888777776


Q ss_pred             CCCCCChhhhhchHHHHHHhh----c-C-CCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHH
Q 009636          232 GKPQPPFDQVSPALPALAHLI----H-S-NDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI  303 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll----~-~-~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~  303 (530)
                      .-+.  ......+...+...+    . . +|+  -..++.-.+|.......+.     ...-.++.|++-|.++.+.++.
T Consensus       154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~~K~  226 (262)
T PF14500_consen  154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPSVKL  226 (262)
T ss_pred             hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcHHHH
Confidence            6542  111222222222111    1 1 122  1233344444444333332     2235789999999999999999


Q ss_pred             HHHHHHhHhhcCC
Q 009636          304 PALRTVGNIVTGD  316 (530)
Q Consensus       304 ~al~~L~nl~~~~  316 (530)
                      .++.+|...+...
T Consensus       227 D~L~tL~~c~~~y  239 (262)
T PF14500_consen  227 DSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHHHHHHHC
Confidence            9999998877543

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=89.21  E-value=24  Score=34.80  Aligned_cols=306  Identities=14%  Similarity=0.137  Sum_probs=154.0

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCC-CcHHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           84 SNDSGVQYECTTQFRKLLSIERS-PPIEEVIRSGVVPRFVEFLL----R------EDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~v~~Lv~ll~----~------~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.+.+.+..|-..|.+.+...++ +....+.+  -++.+++.++    +      +.+..+..+|+++|+.+.. +++..
T Consensus         4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~   80 (372)
T PF12231_consen    4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV   80 (372)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence            44555666666666666655332 22333221  2444444433    1      1136788999999999887 44444


Q ss_pred             HHHHhC---CChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---C-CCchhHHHHHH
Q 009636          153 KVVIDH---GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNAT  223 (530)
Q Consensus       153 ~~~~~~---g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~-~~~~~~~~~a~  223 (530)
                      ..+-+.   -++...+..+..  .+..+....+|+|..=-     +...++....+..++..+.   + -....+....+
T Consensus        81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL  155 (372)
T PF12231_consen   81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERL  155 (372)
T ss_pred             hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence            333221   134555555544  44567777777776422     2222334444555555442   2 34667777888


Q ss_pred             HHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--CChH-HHHH---HHHh----C-----cHH
Q 009636          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--GTND-KIQA---VIEA----G-----VFP  288 (530)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~--~~~~-~~~~---~~~~----~-----~l~  288 (530)
                      .++.+|....|..-......-+|.++..+-+....++..+......+..  .... ....   ..+.    +     +.+
T Consensus       156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  235 (372)
T PF12231_consen  156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE  235 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence            8888888775544333344467777777777777777766555544331  1111 1111   1111    2     334


Q ss_pred             HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh---cCCHHHHHH
Q 009636          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT---AGNREQIQA  365 (530)
Q Consensus       289 ~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~---~~~~~~~~~  365 (530)
                      .+..++.+.+......-+|..--+.-++.....--.-...+...-..+.++ ++.+|..|..+=..+.   ..++.....
T Consensus       236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k  314 (372)
T PF12231_consen  236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK  314 (372)
T ss_pred             HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence            455566553333333333332222222221111111234556666677777 8888887754433332   222222222


Q ss_pred             HHHhCcHHHHHHHHhcC-ch----hHHHHHHHHHHHhhc
Q 009636          366 VIEANIIGPLVALLENA-EF----DIKKEAAWAISNATS  399 (530)
Q Consensus       366 l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~nl~~  399 (530)
                      .+.. +..++...+... ..    .++..+...++++..
T Consensus       315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            2221 233344444433 23    667777777777765

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=89.07  E-value=1.3  Score=36.75  Aligned_cols=74  Identities=8%  Similarity=0.030  Sum_probs=60.6

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~  146 (530)
                      +++..+.+.|+++++.++..|+..|..++...+......+.+.+++..|+.++....++.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            47788888999999999999999999888775444556677888999999999754458899999888887775

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=89.02  E-value=8.2  Score=41.24  Aligned_cols=157  Identities=18%  Similarity=0.194  Sum_probs=109.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..++..|.|.+..+...+-..+...+...+.+   +     ++..|+++.-+..+    ..|+.+|..+-.  +..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence            6789999999999988888888888877654222   2     36667776544442    345556664432  3222 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                           .++..|-.++..  +..|-.++..|+.+....|..-..+.+...+..|+++|..+.+..+...|+.+|..|.-.-
T Consensus        70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 224455556653  4677889999999998887778888999999999999988889999999999998887665


Q ss_pred             CCCChhhhhchHHHHHHhh
Q 009636          234 PQPPFDQVSPALPALAHLI  252 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll  252 (530)
                      +.........++.+...++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            5444444445555555544

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=88.88  E-value=9.1  Score=40.41  Aligned_cols=136  Identities=17%  Similarity=0.174  Sum_probs=81.5

Q ss_pred             hchHHHHHHhhcCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhhC----CCCchhHHHHHHHH
Q 009636          242 SPALPALAHLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTV  309 (530)
Q Consensus       242 ~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~lL~----~~~~~~~~~al~~L  309 (530)
                      ...+..+..++.++    .+.+...++-+++.+..    ..+..-. .+-..+++.+...|.    ..+...+..++++|
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  470 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL  470 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence            34556666666643    45566666667766652    1111001 111234555555443    34555677889999


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhc-CC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chh
Q 009636          310 GNIVTGDDMQTQCVIEYQALPCLLNLLS-GN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFD  385 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~  385 (530)
                      ||+....           .++.+..++. .. ....+|..|+|+|..++...+..        +-+.|+.++.+.  +++
T Consensus       471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E  531 (574)
T smart00638      471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE  531 (574)
T ss_pred             hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence            9987522           2445555554 21 15689999999999997655543        345566666554  688


Q ss_pred             HHHHHHHHHHHh
Q 009636          386 IKKEAAWAISNA  397 (530)
Q Consensus       386 v~~~a~~aL~nl  397 (530)
                      +|..|+.+|...
T Consensus       532 vRiaA~~~lm~t  543 (574)
T smart00638      532 VRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHHhc
Confidence            999888887655

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.81  E-value=8.4  Score=35.99  Aligned_cols=144  Identities=19%  Similarity=0.172  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHH
Q 009636          134 QFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVP  205 (530)
Q Consensus       134 ~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~----~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~  205 (530)
                      +.=++-.+.-++. ++.....+...+  +...+..++.    +..+..+-.++++++|+..... .+..+....  .+..
T Consensus        80 ~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~  157 (268)
T PF08324_consen   80 RFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILE  157 (268)
T ss_dssp             -HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHH
T ss_pred             chhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHH
Confidence            4444545544444 444444443322  2333343332    2567788899999999987665 455555432  2333


Q ss_pred             HHHhhcCCC---chhHHHHHHHHhhhhccCC-CCC-ChhhhhchHHHHHHhhc-C-CChhHHHHHHHHHHHhccCChHHH
Q 009636          206 LLAQLNGQP---KLSMLRNATWTLSNFCRGK-PQP-PFDQVSPALPALAHLIH-S-NDDEVLTDACWALSYLSDGTNDKI  278 (530)
Q Consensus       206 Ll~ll~~~~---~~~~~~~a~~~L~~L~~~~-~~~-~~~~~~~~l~~L~~ll~-~-~d~~v~~~a~~~l~~l~~~~~~~~  278 (530)
                      .+..+..+.   +..++..++..+.|++... ... .......++..+...+. . .|++....++.+++++...+....
T Consensus       158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~  237 (268)
T PF08324_consen  158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK  237 (268)
T ss_dssp             HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence            333332332   7888888999999987654 111 22233345666666333 2 589999999999999997665443


Q ss_pred             H
Q 009636          279 Q  279 (530)
Q Consensus       279 ~  279 (530)
                      .
T Consensus       238 ~  238 (268)
T PF08324_consen  238 Q  238 (268)
T ss_dssp             H
T ss_pred             H
Confidence            3

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.76  E-value=1.8  Score=40.59  Aligned_cols=189  Identities=14%  Similarity=0.091  Sum_probs=103.2

Q ss_pred             HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC--chHHHHHhhcCC---CchhHHHHHHHHHHHHhcCCHHH
Q 009636          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN---YKKSIKKEACWTVSNITAGNREQ  362 (530)
Q Consensus       288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~--~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~  362 (530)
                      ..+...+..-..+.+-+++..+.-++.... ....+...+  +...+..++...   ..+..+.-++++++|+..+.. .
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~  143 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-G  143 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-C
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-c
Confidence            445555555555567788887766655333 222222211  234444444332   267788899999999987532 2


Q ss_pred             HHHHHH-hC--cHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh-ccC-CCChHHHHHHH
Q 009636          363 IQAVIE-AN--IIGPLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD-LLV-CPDPRIVTVCL  434 (530)
Q Consensus       363 ~~~l~~-~~--~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~-lL~-~~~~~~~~~al  434 (530)
                      ...+.. .+  ++..+..+..+.   +..++..++..+.|++..........=....++..+.. +.. ..|++....++
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            333332 22  233333333332   67899999999999975210000000001113555555 333 36899999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHH
Q 009636          435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKL  489 (530)
Q Consensus       435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~i  489 (530)
                      -++++++..+..           ........|....+.... ....+.+++.+.+|
T Consensus       224 vAlGtL~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  224 VALGTLLSSSDS-----------AKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HHHHHHHCCSHH-----------HHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHhccChh-----------HHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            999999955433           233344345555555543 55677777766554

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=88.60  E-value=4.1  Score=31.14  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=57.7

Q ss_pred             HcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009636          411 IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL  490 (530)
Q Consensus       411 ~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il  490 (530)
                      ....+..|+.....+++.....++..+..+++....            ...+.+.|+.+-+.++...-+++.+.....++
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            445677888888888777888899999988876543            67788899999999999999999999999888


Q ss_pred             HH
Q 009636          491 ET  492 (530)
Q Consensus       491 ~~  492 (530)
                      +.
T Consensus        96 ~~   97 (98)
T PF14726_consen   96 DQ   97 (98)
T ss_pred             hc
Confidence            74

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.49  E-value=38  Score=36.12  Aligned_cols=315  Identities=14%  Similarity=0.110  Sum_probs=166.7

Q ss_pred             CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      ....++++++.. |..++..+++.++-.+..-. =.-+.+.  -..+...+.+++..-..-+.+...+..|+.+.....+
T Consensus       527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n-F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e  605 (978)
T KOG1993|consen  527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN-FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE  605 (978)
T ss_pred             HHHHHHHhcCccccceeehHHHHHHHHhhhhcc-CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            456777788865 67788889999987765421 1111111  1233444455554332234566666666666653333


Q ss_pred             hHHHHHhCCChHHHHHhh------CCCCHHHHHHHHHHHHhhhC----CCchhhhhHhhcCChHHHHHhhcC---CCchh
Q 009636          151 HTKVVIDHGAVPIFVKLL------YSPSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLNG---QPKLS  217 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~ll------~~~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~Ll~ll~~---~~~~~  217 (530)
                      .....     ...+++++      .+..+-++...+.+|.|+..    .++.+.      .++-+++.+..+   .+..-
T Consensus       606 ~I~P~-----~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~  674 (978)
T KOG1993|consen  606 HIAPY-----ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVY  674 (978)
T ss_pred             hhhHH-----HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceee
Confidence            32211     12223332      22456677777888888762    122111      123344444322   12333


Q ss_pred             HHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009636          218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  296 (530)
                      +.+.+.........+.+.. ....-+++|.+...++...+.+.. ++..+ +++.-.+....+ ....|++..+..++.+
T Consensus       675 L~EDgmeLW~~~L~n~~~l-~p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~d  751 (978)
T KOG1993|consen  675 LLEDGMELWLTTLMNSQKL-TPELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDD  751 (978)
T ss_pred             hhhhHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHH
Confidence            4455544444444443222 223456777777777655443332 23333 333333333222 3344888888888887


Q ss_pred             CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHH
Q 009636          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGP  374 (530)
Q Consensus       297 ~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~  374 (530)
                      -..+-....+.++..+...++ ........++++.+..-+-.+ ..|.+...-..+++.+.-.+++....+++. .-...
T Consensus       752 vr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~  830 (978)
T KOG1993|consen  752 VRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDI  830 (978)
T ss_pred             hhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHH
Confidence            666677778888888776554 333445667888876655322 256677777777888777777766555532 11222


Q ss_pred             HH--------HHHhc-CchhHHHHHHHHHHHhhcCCCHH
Q 009636          375 LV--------ALLEN-AEFDIKKEAAWAISNATSGGTHE  404 (530)
Q Consensus       375 L~--------~ll~~-~~~~v~~~a~~aL~nl~~~~~~~  404 (530)
                      ++        .+... .+++-|+--+-|+..+...+++.
T Consensus       831 ~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~  869 (978)
T KOG1993|consen  831 LIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD  869 (978)
T ss_pred             HHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence            22        12211 25566666666666666654433

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=88.39  E-value=2.6  Score=35.04  Aligned_cols=73  Identities=8%  Similarity=0.049  Sum_probs=62.1

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHHHHHHHHHHHh
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~al~~l~~ll~~  443 (530)
                      ++..|.+-+.+.++.++..|+..|-.++.++.......+.+..++..|..++.. .++.|...++..+......
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            566777778889999999999999999999988888888899999999999987 6788888888877765533

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.81  E-value=61  Score=38.31  Aligned_cols=230  Identities=16%  Similarity=0.072  Sum_probs=111.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      ...++.-+..++ |..+..+..+++.++..-++.  .++ .+..+.++.-+.+ .++..|..-..+++.+-.+....-..
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            333444455555 666666666666666521111  111 1223444444444 44444544444555443221111111


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC---hhHHHHHHHH-------
Q 009636          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND---DEVLTDACWA-------  266 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~-------  266 (530)
                      -.....+..++.+..++..+.++..++.++..+...............+..+..++.+..   .++....-++       
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            111224556666665667789999999999988877533334445555555556555332   2222221111       


Q ss_pred             ------HHHhccCCh--HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009636          267 ------LSYLSDGTN--DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG  338 (530)
Q Consensus       267 ------l~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~  338 (530)
                            ++.=...+.  +....+ ..-.+-...-++.++++.++..++.++-++-...+.+...   .-+++.+..++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~-rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTL-RTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHH-HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence                  111111111  111111 1122333334456678888899999998887665543211   2345566666655


Q ss_pred             CCchhHHHHHHHHHHHHh
Q 009636          339 NYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~  356 (530)
                      . .--.|..+.-++..+.
T Consensus      1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             h-hhhhhhhHHhhhhHHh
Confidence            4 3334444444444443

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=87.81  E-value=20  Score=32.85  Aligned_cols=129  Identities=13%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHH
Q 009636          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQ  362 (530)
Q Consensus       284 ~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~  362 (530)
                      ...++.++.+++.++..    .-..+|......-...-..+-.|-++.|..++.++. +.-+|..|+.+|..++...+..
T Consensus        72 ~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~  147 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS  147 (249)
T ss_pred             hhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence            36678899998766531    111222222111111111223456777777887764 4568899999999999866666


Q ss_pred             HHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 009636          363 IQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL  418 (530)
Q Consensus       363 ~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L  418 (530)
                      +..+++  .+..++.. +...+..+--.-+..++.+-...-...++.+.+.|.++..
T Consensus       148 Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~  202 (249)
T PF06685_consen  148 REEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS  202 (249)
T ss_pred             HHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence            666654  44444444 3333333333333333333332233455566667777553

The function of this family is unknown.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=87.22  E-value=25  Score=32.63  Aligned_cols=179  Identities=20%  Similarity=0.174  Sum_probs=100.8

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-------chhhhhHhhcCChHHHHHhhcCCCc----hhHHHHHHHHhhh
Q 009636          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQPK----LSMLRNATWTLSN  228 (530)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-------~~~~~~i~~~~~i~~Ll~ll~~~~~----~~~~~~a~~~L~~  228 (530)
                      +-+.+.+-+.+  +...+.++..|..++...       .+.|-.+.-.+.+|.++..+ +.++    ......++..|+.
T Consensus        65 lq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~~La~  141 (262)
T PF14225_consen   65 LQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAEALAQ  141 (262)
T ss_pred             HHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHHHHHH
Confidence            33444444444  345566777777776422       11233333334566666666 3333    2455667788888


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~  308 (530)
                      +|.......   ...++....+--..+..+....++..|+.-..  ++     .+...+..++.+|.++-+.++..++.+
T Consensus       142 ~a~~~~~~~---La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~i  211 (262)
T PF14225_consen  142 VAEAQGLPN---LARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQI  211 (262)
T ss_pred             HHHhCCCcc---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            886533221   11222222211112334455555555543221  11     112456778999999989999999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      |..+...-+....  ...+++..+.++++.+    ...+|..+|-++..
T Consensus       212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            9999876554432  5566899999999876    34566666655543

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=87.03  E-value=7.7  Score=31.05  Aligned_cols=87  Identities=16%  Similarity=0.195  Sum_probs=59.7

Q ss_pred             HHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCCh--
Q 009636          351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDP--  427 (530)
Q Consensus       351 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~--  427 (530)
                      -|.+++..++.....     ++..|.+-|+..++.|+..++.+|.+++..|++.+...+... ..|..+..+-...|+  
T Consensus        24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~   98 (122)
T cd03572          24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK   98 (122)
T ss_pred             HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence            344444444444433     556788888888999999999999999999988887776654 456666555543332  


Q ss_pred             ------HHHHHHHHHHHHHHH
Q 009636          428 ------RIVTVCLEGLENILK  442 (530)
Q Consensus       428 ------~~~~~al~~l~~ll~  442 (530)
                            .|+..|-+++..|+.
T Consensus        99 Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          99 GDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             CcchhHHHHHHHHHHHHHHhc
Confidence                  477777777766653

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.97  E-value=3.8  Score=36.16  Aligned_cols=138  Identities=8%  Similarity=0.121  Sum_probs=88.2

Q ss_pred             HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHH
Q 009636          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----NYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLV  376 (530)
Q Consensus       302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~  376 (530)
                      ...|+..|..+++ .++....++++.+--.+...|..    .....+|-.+..+++.+.. +++..+..+....++|.++
T Consensus       117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            4456666666665 44444455566554444444432    2134678889999999988 6777888888899999999


Q ss_pred             HHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--------CChHHH-HhccCCCChHHHHHHHHHHHHHHH
Q 009636          377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPL-CDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       377 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~~L-~~lL~~~~~~~~~~al~~l~~ll~  442 (530)
                      ++++.++.--+.-|+..+..+....  ....++.+.        .++..+ ..+.+.....+...++.+...+..
T Consensus       196 rIme~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            9999998888888888888887743  333433321        112222 223345566666666666655543

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=86.90  E-value=10  Score=30.38  Aligned_cols=74  Identities=12%  Similarity=0.257  Sum_probs=53.6

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHh-hhhccHHHHHHHhc--------CCCHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI-DDAEGLEKIESLQT--------HDNAEIYE  484 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~l~~--------~~~~~v~~  484 (530)
                      +++.|..-|+..++.|...+|.+|..++..++..          |...+ .....+..+.+...        .++..|+.
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~----------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~  108 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD----------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVRE  108 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH----------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHH
Confidence            5778888888888999899999999999887642          33333 23334555555544        34567999


Q ss_pred             HHHHHHHHhCCCC
Q 009636          485 KSVKLLETYWLDD  497 (530)
Q Consensus       485 ~a~~il~~~~~~~  497 (530)
                      .|.+++.-.|+++
T Consensus       109 ~A~El~~~if~~~  121 (122)
T cd03572         109 EAQELIKAIFSYS  121 (122)
T ss_pred             HHHHHHHHHhccC
Confidence            9999999998864

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.64  E-value=2.2  Score=34.98  Aligned_cols=74  Identities=9%  Similarity=0.001  Sum_probs=58.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHH-HHHHHHHHHHHHhc
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-LQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~-i~~~a~~~L~~l~~  146 (530)
                      +++..+.+.|+++++.++..|+..+..++...+.+...++...+++..|+.++....... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            477888888999999999999999998887754445566667888999999988765333 88888887777665

Unpublished observations. Domain of unknown function.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=86.27  E-value=4  Score=33.86  Aligned_cols=74  Identities=11%  Similarity=0.023  Sum_probs=61.9

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhh
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ++..|.+-+.++++.++..|+..|-.++.++.......+.+.++++.|..++. ..++.|+..++..+.......
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            56677788888999999999999999999887777788888999999999887 567788888888877766544

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=86.03  E-value=8.6  Score=29.41  Aligned_cols=93  Identities=13%  Similarity=0.118  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009636           88 GVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (530)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  166 (530)
                      +++..|+..+..-+... --....+. ...++..|++++..++ +..+..++..+..++. ++.....+.+.|+...|.+
T Consensus         2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k   78 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK   78 (98)
T ss_pred             hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence            46666766655333322 22233333 4567888899998888 5688999999999888 6778888888999888777


Q ss_pred             hhCCCCHHHHHHHHHHH
Q 009636          167 LLYSPSDDVREQAVWAL  183 (530)
Q Consensus       167 ll~~~~~~i~~~a~~~L  183 (530)
                      +-...++..+..+-.++
T Consensus        79 lr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   79 LRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHhcCCHHHHHHHHHHH
Confidence            66556666655544443

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=86.01  E-value=9.8  Score=31.12  Aligned_cols=75  Identities=8%  Similarity=-0.062  Sum_probs=61.8

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC---CChHHHHHHHHHHHHHHHhhh
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~---~~~~~~~~al~~l~~ll~~~~  445 (530)
                      ++..|.+-+.++++.++..|+..|-.++.++...+...+....++..|..++..   .++.++..++..+...-....
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            566777888899999999999999999999887777777777888889998875   477899998888887765544

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=85.57  E-value=8.1  Score=46.73  Aligned_cols=264  Identities=15%  Similarity=0.174  Sum_probs=134.9

Q ss_pred             cCCChHHHHHHHHHHHHhhcCCCC-----CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009636           83 WSNDSGVQYECTTQFRKLLSIERS-----PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (530)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  157 (530)
                      ...+++.+..+...++.++.....     +..-. +...++..+..+-....++.++......+.      ........+
T Consensus       491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~-~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ  563 (2341)
T KOG0891|consen  491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQ-VVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ  563 (2341)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHH-HHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence            345677777776666666543211     00000 011223333333222222555554443332      222223334


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhh-hccCC
Q 009636          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSN-FCRGK  233 (530)
Q Consensus       158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~-L~~~~  233 (530)
                      .+.+..+...+....-.+++.+...+++++..+|.+.-.-+..    ..+..+.   .+.-. ....-+..... +....
T Consensus       564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~----~~l~~~s~l~~sg~~-r~~~~~a~~~~~~i~~~  638 (2341)
T KOG0891|consen  564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK----TLLELLTELEFSGMA-RTKEESAKLLCELIISS  638 (2341)
T ss_pred             chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH----HHHHHhchhhhcchH-HhHHHHHHHhhHHHHHH
Confidence            4555556666666777889999999999998766321111111    1111111   11101 11111111110 00000


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhHh
Q 009636          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNI  312 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~~~~al~~L~nl  312 (530)
                      +..........+..++..+...++.+...+..+++.|+..........++ ..++.+.+.+.. ++..-+..++++++++
T Consensus       639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l  717 (2341)
T KOG0891|consen  639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL  717 (2341)
T ss_pred             HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence            11111223444566667777777788888888998888655433333444 455555555544 4555678899999999


Q ss_pred             hcCCchhhHHHh-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636          313 VTGDDMQTQCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       313 ~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                      ............ -.-++..+...+.......++.++...++++...+
T Consensus       718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d  765 (2341)
T KOG0891|consen  718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD  765 (2341)
T ss_pred             hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence            875443221111 12456666666666656678888888888776543

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=85.13  E-value=14  Score=35.99  Aligned_cols=210  Identities=20%  Similarity=0.146  Sum_probs=107.6

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (530)
                      ..++..|..++..+.++......+.+++.-+..-    ..-+...++..+..-+.+..+.+|..-+..++.+....+...
T Consensus        21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~   96 (339)
T PF12074_consen   21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD   96 (339)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence            4456777777776554666666666665544311    001112345667777777666789888888888775111000


Q ss_pred             hhHhhcCChHHHHHhhc---CCCchhHH---HHHHHHhhhhccCC-----------------CCCChhhhhchHHHHHHh
Q 009636          195 DLVLSQGGLVPLLAQLN---GQPKLSML---RNATWTLSNFCRGK-----------------PQPPFDQVSPALPALAHL  251 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~---~~~~~~~~---~~a~~~L~~L~~~~-----------------~~~~~~~~~~~l~~L~~l  251 (530)
                      ..-.-..+++.|++.++   .++-....   -.+..++..++...                 +.+.+....       ++
T Consensus        97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-------kv  169 (339)
T PF12074_consen   97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE-------KV  169 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-------HH
Confidence            11112236777777763   12211111   01111111111111                 011111000       22


Q ss_pred             hcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCc
Q 009636          252 IHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (530)
Q Consensus       252 l~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~  328 (530)
                      ... .+++-....++++..+..........-....+-..++.++.+.  .+.+|..|+.++..+...++..    +...+
T Consensus       170 yskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~l  245 (339)
T PF12074_consen  170 YSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSL  245 (339)
T ss_pred             HhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHH
Confidence            222 3444555566666665544332111111223456677888777  8999999999999998877753    33445


Q ss_pred             hHHHHHhhcCC
Q 009636          329 LPCLLNLLSGN  339 (530)
Q Consensus       329 l~~L~~lL~~~  339 (530)
                      +..+..++...
T Consensus       246 i~~l~~~l~~~  256 (339)
T PF12074_consen  246 ISGLWKWLSSS  256 (339)
T ss_pred             HHHHHHHHHhc
Confidence            66666666543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=85.08  E-value=4.2  Score=33.33  Aligned_cols=74  Identities=14%  Similarity=0.047  Sum_probs=58.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhc
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~--~~~~i~~~a~~~L~~l~~  146 (530)
                      +++..+.+.|+++++.++..|+..|..++...+.+....+.....+..|+.++...  .++.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            47788888999999999999999999888775333444555557788899999763  347899999988888776

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=85.05  E-value=5.8  Score=32.71  Aligned_cols=73  Identities=18%  Similarity=0.253  Sum_probs=57.6

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..-|.++++.++..|+..|..+++.+..          .|...+...+.++.+..+..      ..++.|++++.
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~----------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil  108 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE----------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKII  108 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence            566777778899999999999999999886633          25666777777777777764      36899999999


Q ss_pred             HHHHHhCCC
Q 009636          488 KLLETYWLD  496 (530)
Q Consensus       488 ~il~~~~~~  496 (530)
                      .+++.|-..
T Consensus       109 ~li~~W~~~  117 (139)
T cd03567         109 ELLYSWTLE  117 (139)
T ss_pred             HHHHHHHHH
Confidence            999998653

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.03  E-value=4.5  Score=36.30  Aligned_cols=83  Identities=20%  Similarity=0.294  Sum_probs=60.7

Q ss_pred             hhHHHHHHHHhHhhcCCchhhHHHhh-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHhCc
Q 009636          300 SVLIPALRTVGNIVTGDDMQTQCVIE-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV-IEANI  371 (530)
Q Consensus       300 ~~~~~al~~L~nl~~~~~~~~~~~~~-------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~~  371 (530)
                      +-+..|+.+|+.++.... ..+.++.       ..++..|..++....++..|+-|...|.|++.++......+ .+.+.
T Consensus       139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            457889999999986332 2223322       24566777777776688899999999999999877666444 46789


Q ss_pred             HHHHHHHHhcCc
Q 009636          372 IGPLVALLENAE  383 (530)
Q Consensus       372 i~~L~~ll~~~~  383 (530)
                      |..|+..+...+
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=84.66  E-value=41  Score=33.94  Aligned_cols=262  Identities=11%  Similarity=0.068  Sum_probs=123.2

Q ss_pred             CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC----CCCChhhhhchHH
Q 009636          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP  246 (530)
Q Consensus       171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~~l~  246 (530)
                      +++-+.....+++..+-.+.......++.. .+..+....++..++..-.+...+++.+.+..    +.........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            455566666666655544433333333221 23333333334457777777666666665543    2222345677889


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCc---hhHHHHHHHHhHhhcCCchhhHH
Q 009636          247 ALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSP---SVLIPALRTVGNIVTGDDMQTQC  322 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~---~~~~~al~~L~nl~~~~~~~~~~  322 (530)
                      .+...|..+-.+..-++...++.+.+... ....    .-....+-.++...-|   .-.-...+.|.++....+...  
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i--  194 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI--  194 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh--
Confidence            99999988878888888888888875544 1111    1122222223322222   222344556666554333322  


Q ss_pred             Hhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHH
Q 009636          323 VIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISN  396 (530)
Q Consensus       323 ~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~n  396 (530)
                       ...    +++..+-+++.+. ..  -..+...|..+...-+ +.....+. .++..++.-|++. ..+..+.-+..++.
T Consensus       195 -~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~  269 (435)
T PF03378_consen  195 -VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSL  269 (435)
T ss_dssp             ----S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred             -cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence             222    3444444566554 22  2456667776665333 23333332 3555555555544 45666666666666


Q ss_pred             hhcCCCHHHHHHHHH---cCChHHHHhcc------CCCChHHHHHHHHHHHHHHHhh
Q 009636          397 ATSGGTHEQIKFLVI---QGCIKPLCDLL------VCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       397 l~~~~~~~~~~~l~~---~~~i~~L~~lL------~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ++...+++..-..++   .|+...+..-+      +-..+.-+..+.-++.+++...
T Consensus       270 ~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es  326 (435)
T PF03378_consen  270 FAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES  326 (435)
T ss_dssp             HHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence            555434444444333   24333332211      1122333445555666666443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.07  E-value=3.1  Score=37.29  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHH-------cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhCC
Q 009636           88 GVQYECTTQFRKLLSIERSPPIEEVIR-------SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV-IDHG  159 (530)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~-------~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~-~~~g  159 (530)
                      .-|..|+.++.|+.-.+  .+++.++.       ..++..|++++....++..++-|+-.|.+++.++......+ .+.+
T Consensus       139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            46788999999986553  33332222       23566778888776668999999999999999877666444 4578


Q ss_pred             ChHHHHHhhCCC
Q 009636          160 AVPIFVKLLYSP  171 (530)
Q Consensus       160 ~i~~L~~ll~~~  171 (530)
                      .|..|+.++...
T Consensus       217 ~i~~Li~FiE~a  228 (257)
T PF12031_consen  217 CISHLIAFIEDA  228 (257)
T ss_pred             hHHHHHHHHHHH
Confidence            999999999653

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.95  E-value=14  Score=34.78  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=76.0

Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHhCcHHHHHHH----Hh--------cCchhHHHHHHHH
Q 009636          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QAVIEANIIGPLVAL----LE--------NAEFDIKKEAAWA  393 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i~~L~~l----l~--------~~~~~v~~~a~~a  393 (530)
                      -++|.++.++++. ++.+|..++.+|..+....+... ..+.+.|+.+.+.+.    +.        .....+-..|.-+
T Consensus       119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            4689999999998 99999999999999988543332 335566765544443    33        3356677788888


Q ss_pred             HHHhhcC-------CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          394 ISNATSG-------GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       394 L~nl~~~-------~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                      |..++..       ........++..|++..+....+...+.++...++.+..++..
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~  254 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE  254 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence            8877431       1223344445555555554444445678888877777766654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=83.74  E-value=33  Score=37.01  Aligned_cols=166  Identities=14%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             HhhcCchHHHHHhhcCCC-------chhHHHHHHHHHHHHhcCCHHHHHHHHH-------h-CcHHHHHHHHhc----Cc
Q 009636          323 VIEYQALPCLLNLLSGNY-------KKSIKKEACWTVSNITAGNREQIQAVIE-------A-NIIGPLVALLEN----AE  383 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------~-~~i~~L~~ll~~----~~  383 (530)
                      ++..+.+..++.+...+.       ..+....|..+|+-++.-. +....+..       + ..+..++.....    .|
T Consensus       597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP-~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D  675 (1516)
T KOG1832|consen  597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIP-DIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD  675 (1516)
T ss_pred             HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecc-hHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence            445566666666665432       1234455555555554432 22222221       1 123333333221    27


Q ss_pred             hhHHHHHHHHHHHhhcCC---------------------------C---HHHHHHHH----HcCChHHHHhccCCCCh--
Q 009636          384 FDIKKEAAWAISNATSGG---------------------------T---HEQIKFLV----IQGCIKPLCDLLVCPDP--  427 (530)
Q Consensus       384 ~~v~~~a~~aL~nl~~~~---------------------------~---~~~~~~l~----~~~~i~~L~~lL~~~~~--  427 (530)
                      +++++.|+.+|.|+.+..                           .   ....+.++    .+++|..|+.+|+-..|  
T Consensus       676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t  755 (1516)
T KOG1832|consen  676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT  755 (1516)
T ss_pred             HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence            899999999999998643                           0   11222222    35789999999985443  


Q ss_pred             ---HHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHH---Hhc--CCCHHHHHHHHHHHHHhCCC
Q 009636          428 ---RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES---LQT--HDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       428 ---~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---l~~--~~~~~v~~~a~~il~~~~~~  496 (530)
                         .++..|+.+|.-|.....-.+...      -..++. ..+++.+..   +++  |..-...+.|..+|+..++.
T Consensus       756 ~aD~IRalAc~~L~GLaR~~tVrQIlt------KLpLvt-~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~~g~  825 (1516)
T KOG1832|consen  756 TADCIRALACRVLLGLARDDTVRQILT------KLPLVT-NERAQILMAEPVTYDKRHEHLQFCKLASALLKEAQGT  825 (1516)
T ss_pred             cHHHHHHHHHHHHhccccCcHHHHHHH------hCcccc-chHHHHHhhCcccccchhHHHHHHHHHHHHHHHHhCC
Confidence               377788888777766554322100      011222 222333221   122  33344567889999988765

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=83.66  E-value=58  Score=33.67  Aligned_cols=146  Identities=13%  Similarity=-0.006  Sum_probs=86.0

Q ss_pred             chhHHHHHHHHH---HHHhcC-CHHHH---HHHHHhCcHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009636          341 KKSIKKEACWTV---SNITAG-NREQI---QAVIEANIIGPLVA----LLENAEFDIKKEAAWAISNATSGGTHEQIKFL  409 (530)
Q Consensus       341 ~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  409 (530)
                      ...++..+...+   .....+ .+..+   ...+..++.|.+-.    -....+...|..+..+|+.++.....-..   
T Consensus       334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~---  410 (501)
T PF13001_consen  334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS---  410 (501)
T ss_pred             ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc---
Confidence            345666665555   444442 23322   33334455554410    01123678999999999999997532211   


Q ss_pred             HHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHH-HHHHHhcCCCHHHHHHHHH
Q 009636          410 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE-KIESLQTHDNAEIYEKSVK  488 (530)
Q Consensus       410 ~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~l~~~~~~~v~~~a~~  488 (530)
                      -+-+++..|.+-|+.++++++..+-++|..+..........     .....    ...+. .+.....+....++..|.+
T Consensus       411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-----~~~~~----~~~~~~l~~~~~~~~~~~~R~~avk  481 (501)
T PF13001_consen  411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-----EDEQK----RLLLELLLLSYIQSEVRSCRYAAVK  481 (501)
T ss_pred             ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-----hhHHH----HHHHHHHHHhhccchhHHHHHHHHH
Confidence            13367888888888999999999999999998766542210     00000    00011 1222334566668888888


Q ss_pred             HHHHhCCCCC
Q 009636          489 LLETYWLDDE  498 (530)
Q Consensus       489 il~~~~~~~~  498 (530)
                      -.++.|+.++
T Consensus       482 ~an~~fpf~d  491 (501)
T PF13001_consen  482 YANACFPFSD  491 (501)
T ss_pred             HHHHhCCccc
Confidence            8888888655

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []

Probab=83.00  E-value=12  Score=34.88  Aligned_cols=75  Identities=9%  Similarity=0.140  Sum_probs=50.2

Q ss_pred             CChHHHHHHHHHHHHHHHhhhhhhhcCC-----CCchhhHHHhhhhccHHHHHHHhcCCCH-HHHHHHHHHHHHhCCCCC
Q 009636          425 PDPRIVTVCLEGLENILKVGEAEKNLGN-----TDVNVFTQMIDDAEGLEKIESLQTHDNA-EIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       425 ~~~~~~~~al~~l~~ll~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~l~~l~~~~~~-~v~~~a~~il~~~~~~~~  498 (530)
                      .|..+++.++..+.|++...+.......     ...+.+...|.+.|.++.|..+..+.++ +-.....+|+.-.|-+.+
T Consensus       132 ~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~  211 (266)
T PF04821_consen  132 RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD  211 (266)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence            3556899999999999987443211100     0245677888899999999999877633 344456666666666554


Q ss_pred             C
Q 009636          499 D  499 (530)
Q Consensus       499 ~  499 (530)
                      .
T Consensus       212 p  212 (266)
T PF04821_consen  212 P  212 (266)
T ss_pred             H
Confidence            3

This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=82.66  E-value=28  Score=30.16  Aligned_cols=85  Identities=19%  Similarity=0.226  Sum_probs=61.6

Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~  317 (530)
                      ......+|.++.-+...+...+.-|...+..+... ..+.+-.++. .++..|-..|.+.++.+...++.+|..|+...+
T Consensus        34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~  112 (183)
T PF10274_consen   34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSD  112 (183)
T ss_pred             cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            33467889999988887777667777777777655 4444433333 567777788899999999999999999977666


Q ss_pred             hhhHHHh
Q 009636          318 MQTQCVI  324 (530)
Q Consensus       318 ~~~~~~~  324 (530)
                      .....+.
T Consensus       113 ~vG~aLv  119 (183)
T PF10274_consen  113 MVGEALV  119 (183)
T ss_pred             hhhHHHH
Confidence            5444443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=82.20  E-value=41  Score=30.87  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh--HhhcCChHHHHHhhcCCC-chhHHHHHHHHhhhhccCCC
Q 009636          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL--VLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~--i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~~~~  234 (530)
                      ..+++.++++++.++..+-    ..++-.....  ....  .+-.|-+..|.+++.+.. +.-++..|+.+|..+....+
T Consensus        72 ~~A~~~li~l~~~~~~~~~----~l~GD~~tE~--l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~  145 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDFLE----DLFGDFITED--LPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP  145 (249)
T ss_pred             hhhHHHHHHHHcCCcchHH----HHHcchhHhH--HHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            4568899999976543211    1111111110  1111  122455777777775433 67788889999999998876


Q ss_pred             CCChhhhhchHHHHHHhhcCCChh
Q 009636          235 QPPFDQVSPALPALAHLIHSNDDE  258 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~  258 (530)
                      ........-+-..+...+...+..
T Consensus       146 ~~Re~vi~~f~~ll~~~l~~~~~~  169 (249)
T PF06685_consen  146 ISREEVIQYFRELLNYFLERNPSF  169 (249)
T ss_pred             CCHHHHHHHHHHHHHHHhccCchH
Confidence            555444444444444445444444

The function of this family is unknown.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=80.65  E-value=1.1e+02  Score=35.18  Aligned_cols=150  Identities=9%  Similarity=0.114  Sum_probs=90.8

Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                      ...+++|.|..-|.+++..++..|...++.+......... --...+....+.-+.+.+..+|..++....++...++..
T Consensus       256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~  334 (1266)
T KOG1525|consen  256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI  334 (1266)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence            3467778888788889999999999999998876554322 001234555666677788899999999888887766544


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      ....   +....+-..  +. ++.+|.....++.-+..  ....-.++.. ++..+-+.+.+..+.||..|+..|..+..
T Consensus       335 ~~~~---~~~~~l~~~--~~-D~~~rir~~v~i~~~~v--~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  335 AKAS---TILLALRER--DL-DEDVRVRTQVVIVACDV--MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             hhHH---HHHHHHHhh--cC-ChhhhheeeEEEEEeeh--hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            3221   122222222  22 44444433222221111  0111112223 56666667777789999999998887765

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=80.42  E-value=24  Score=33.41  Aligned_cols=104  Identities=12%  Similarity=0.192  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHH---------------------HHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhc
Q 009636          343 SIKKEACWTVSNITAGNREQIQA---------------------VIEANIIGPLVALLENA--EFDIKKEAAWAISNATS  399 (530)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~---------------------l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~  399 (530)
                      .+|..-...+.++|.+.......                     --+.|++..+++.+...  +...|-.-+.|+-.+..
T Consensus        47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR  126 (303)
T PF12463_consen   47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR  126 (303)
T ss_pred             HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence            36677778888887732111100                     11357788888877654  66788899999999999


Q ss_pred             CCCH-HHHHHHHHcCChHHHHhccCCC---ChHHHHHHHHHHHHHHHhhhh
Q 009636          400 GGTH-EQIKFLVIQGCIKPLCDLLVCP---DPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       400 ~~~~-~~~~~l~~~~~i~~L~~lL~~~---~~~~~~~al~~l~~ll~~~~~  446 (530)
                      ++++ ....++.+.|+++.++..+-++   +..+.+...+.|+-+++....
T Consensus       127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~  177 (303)
T PF12463_consen  127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRD  177 (303)
T ss_pred             CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHH
Confidence            9887 5666888999999998866543   346889999999999987755

Proteins in this family are typically between 399 and 797 amino acids in length.

>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)

Probab=80.21  E-value=7.4  Score=28.10  Aligned_cols=52  Identities=23%  Similarity=0.416  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ..++++|..|-....            -.+.+...+.-..+..|..|++++|...|..++..|-
T Consensus        19 ~~~l~~L~~L~~~~~------------t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK   70 (75)
T smart00509       19 SRCLDILKKLKKLPI------------TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK   70 (75)
T ss_pred             HHHHHHHHHHhcCCC------------CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            345666665554332            2677778888888999999999999999999998773

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=80.17  E-value=62  Score=31.70  Aligned_cols=158  Identities=12%  Similarity=0.072  Sum_probs=86.5

Q ss_pred             CHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc---CCC------CHHHHHHHHHHHHH
Q 009636           74 NLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---RED------YPQLQFEAAWALTN  143 (530)
Q Consensus        74 ~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~---~~~------~~~i~~~a~~~L~~  143 (530)
                      ....+...|..+. +..+...+..++- ++.+ ....+-+.....+..|+.+-.   .++      +..+..+|+.||+|
T Consensus        46 L~e~i~~Vle~~~p~t~~v~~LetvrI-LSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcN  123 (532)
T KOG4464|consen   46 LGERIFEVLENGEPLTHRVVCLETVRI-LSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCN  123 (532)
T ss_pred             HHHHHHHHHhcCCCchhhhhHHHHHHH-Hhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHH
Confidence            3455556666555 4455666666664 4443 222222222222444444322   111      24788999999999


Q ss_pred             HhcCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhh-hHhhcCChHHHHHhhcC-----
Q 009636          144 IASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNG-----  212 (530)
Q Consensus       144 l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~~~~~~-~i~~~~~i~~Ll~ll~~-----  212 (530)
                      +...++..++..........+++.+..     ....+...-+..|.-+..-.+..|. .+...++++.+.+.+.+     
T Consensus       124 lvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgid  203 (532)
T KOG4464|consen  124 LVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGID  203 (532)
T ss_pred             HHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence            999899999998888877777776632     1112222233333333332333444 44566778888777741     


Q ss_pred             C---------CchhHHHHHHHHhhhhccCC
Q 009636          213 Q---------PKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       213 ~---------~~~~~~~~a~~~L~~L~~~~  233 (530)
                      +         .+.....-++.++.|++.+.
T Consensus       204 se~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  204 SEINVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence            1         11233444556666766654

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=80.14  E-value=17  Score=34.26  Aligned_cols=122  Identities=16%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh----ccC--------CCChHHHHHHHHHHH
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD----LLV--------CPDPRIVTVCLEGLE  438 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~----lL~--------~~~~~~~~~al~~l~  438 (530)
                      ++|.++.++++.++.+|..++.+|..+........-..|.+.|..+.+.+    ++.        .+...+...+..++.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            78999999999999999999999999998655443233566676554433    333        345568888888988


Q ss_pred             HHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          439 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       439 ~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .++.........   ........+-..|.+..+..-...+.+++.....+.+..+..
T Consensus       200 ~L~~~~~~~~~~---~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~  253 (282)
T PF10521_consen  200 SLLKTQENDDSN---PRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID  253 (282)
T ss_pred             HHHHhhccCCcc---cchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence            887654321110   111112222223333333333333357776666666655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	530
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-139
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-132
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-132
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-130
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-130
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-129
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-128
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-128
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-128
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-119
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-114
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-114
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-114
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-114
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-114
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-114
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-113
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-113
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-113
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-113
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-113
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-113
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-113
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-113
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-112
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-36
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-29
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-29
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-28
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		9e-27
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-25
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-22
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-20
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		3e-04
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		3e-04
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		3e-04
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		3e-04
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		4e-04
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		4e-04
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		4e-04
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		4e-04
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		4e-04
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		4e-04
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		4e-04
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		5e-04
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		5e-04
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		8e-04

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/502 (80%), Positives = 452/502 (90%), Gaps = 1/502 (0%)
Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 63  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 181
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241
Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301
Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361
Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           +QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIK+LV +GCIKPLCD
Sbjct: 362 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 421
Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480
           LL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+QMID+AEGLEKIE+LQ+HDN 
Sbjct: 422 LLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN 481
Query: 481 EIYEKSVKLLETYWLDDEDETM 502
           EIYEK+VK+LE YW+D+ED+TM
Sbjct: 482 EIYEKAVKILEAYWMDEEDDTM 503

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/462 (77%), Positives = 405/462 (87%), Gaps = 1/462 (0%)
Query: 41  REESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKL 100
           +E +  K  R+ + +   L  D +    A    +LP M+ GV+S+D+ +Q E TTQFRKL
Sbjct: 5   KETAAAKFERQHMDSPD-LGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKL 63
Query: 101 LSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160
           LSIERSPPIEEVI+SGVVPRFV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGA
Sbjct: 64  LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
           VPIFVKLL S SDDVREQAVWALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLR
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280
           NATWTLSNFCRGKPQP F+Q  PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQA
Sbjct: 184 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 243
Query: 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340
           VIEAGV PRL E L+HPSPSVLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N 
Sbjct: 244 VIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL 303
Query: 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400
           KKSIKKEACWT+SNITAGN++QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSG
Sbjct: 304 KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 363
Query: 401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQ 460
           G+H+QIK+LV +GCIKPLCDLL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+Q
Sbjct: 364 GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQ 423
Query: 461 MIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETM 502
           MID+AEGLEKIE+LQ+HDN EIYEK+VK+LE YW+D+ED+TM
Sbjct: 424 MIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM 465

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  492 bits (1266), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/517 (53%), Positives = 355/517 (68%), Gaps = 19/517 (3%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRR-----EGLQNQQPL 59
           P  +  + +NK + +  ADE RRRR+   VE+RK KR+E+L K+R      +G  + +  
Sbjct: 14  PEYRRTNFKNKGRFS--ADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71
Query: 60  ANDVNAPGT--AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
            + V+A     ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131
Query: 118 VPRFVEFLLREDYPQ-LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           VPR VEF+ RE+ P+ LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+
Sbjct: 132 VPRLVEFM-RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQ 235
           EQA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRG KPQ
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQ 249
Query: 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
           P +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L 
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309
Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           H S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNI
Sbjct: 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNI 368
Query: 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQG 413
           TAGN EQIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QG
Sbjct: 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428
Query: 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES 473
           CIKPLCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI +
Sbjct: 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488
Query: 474 LQTHDNAEIYEKSVKLLETYWLDDE---DETMPPGDA 507
            Q ++N +IYEK+ K++ETY+ ++E   DETM P +A
Sbjct: 489 CQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNA 525

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/427 (58%), Positives = 309/427 (72%), Gaps = 4/427 (0%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435
           +++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 436 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 494
           GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 381 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 440
Query: 495 LDDEDET 501
            +DED +
Sbjct: 441 TEDEDSS 447

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/427 (58%), Positives = 309/427 (72%), Gaps = 4/427 (0%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435
           +++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 436 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 494
           GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 384 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443
Query: 495 LDDEDET 501
            +DED +
Sbjct: 444 TEDEDSS 450

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/440 (57%), Positives = 314/440 (71%), Gaps = 10/440 (2%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 359 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 491 ETYWLDDE---DETMPPGDA 507
           ETY+ ++E   DETM P +A
Sbjct: 419 ETYFGEEEDAVDETMAPQNA 438

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/440 (57%), Positives = 314/440 (71%), Gaps = 10/440 (2%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 359 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 491 ETYWLDDE---DETMPPGDA 507
           ETY+ ++E   DETM P +A
Sbjct: 419 ETYFGEEEDAVDETMAPQNA 438

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  457 bits (1177), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/424 (58%), Positives = 304/424 (71%), Gaps = 7/424 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 358 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 491 ETYW 494
           ETY+
Sbjct: 418 ETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/424 (57%), Positives = 304/424 (71%), Gaps = 7/424 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENI+K+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 358 EVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 491 ETYW 494
           ETY+
Sbjct: 418 ETYF 421

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/426 (57%), Positives = 304/426 (71%), Gaps = 7/426 (1%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPR 428
           +I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357
Query: 429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK 488
           I+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K
Sbjct: 358 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 489 LLETYW 494
           ++ETY+
Sbjct: 418 IIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/426 (57%), Positives = 304/426 (71%), Gaps = 7/426 (1%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPR 428
           +I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357
Query: 429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK 488
           I+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K
Sbjct: 358 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 489 LLETYW 494
           ++ETY+
Sbjct: 418 IIETYF 423

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  426 bits (1096), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/517 (46%), Positives = 329/517 (63%), Gaps = 25/517 (4%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL---QNQQPLAN 61
           P ++ +  +NK K   D+ E RRRR +  VE+RK K++E + K+R           PL  
Sbjct: 10  PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62  DVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+
Sbjct: 67  NRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 123
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAV
Sbjct: 124 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 183
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-P 234
           WALGNIAG     RDLV+  G + PLLA L   P LS      LRN TWTLSN CR K P
Sbjct: 184 WALGNIAGAGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNP 242
Query: 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
            PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L
Sbjct: 243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302
Query: 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
                 ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SN
Sbjct: 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSN 361
Query: 355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC 414
           ITAG ++QIQ V+   ++  LV +L  A+F  +K AAWAI+N TSGGT EQI +LV  G 
Sbjct: 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421
Query: 415 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL 474
           I+PL +LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+L
Sbjct: 422 IEPLMNLLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEAL 476
Query: 475 QTHDNAEIYEKSVKLLETYWL--DDEDETMPPGDASQ 509
           Q H+N  +Y+ S+ L+E Y+   ++ED+ + P   S+
Sbjct: 477 QRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE 513

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 420 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 475 KYFSVEEEE 483

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 168 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 226
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 345
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 346 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 405
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 406 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 460
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 461 KYFSVEEEE 469

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 420 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 475 KYFSVEEEE 483

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 420 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 475 KYFSVEEEE 483

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/440 (49%), Positives = 293/440 (66%), Gaps = 15/440 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 370 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 492 TYWL--DDEDETMPPGDASQ 509
            Y+   ++ED+ + P   S+
Sbjct: 425 KYFSVEEEEDQNVVPETTSE 444

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 138 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 376 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 431 KYFSVEEEE 439

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/444 (49%), Positives = 293/444 (65%), Gaps = 17/444 (3%)
Query: 58  PLANDVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
           PL  + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G
Sbjct: 20  PLQENRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 76
Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++P+FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + 
Sbjct: 77  LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 136
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCR 231
           EQAVWALGNIAGD    RDLV+  G + PLLA L   P LS      LRN TWTLSN CR
Sbjct: 137 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCR 195
Query: 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290
            K P PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L
Sbjct: 196 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 255
Query: 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350
            + L      ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA W
Sbjct: 256 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATW 314
Query: 351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV 410
           T+SNITAG ++QIQ V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV
Sbjct: 315 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 374
Query: 411 IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 470
             G I+PL +LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+K
Sbjct: 375 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDK 429
Query: 471 IESLQTHDNAEIYEKSVKLLETYW 494
           IE+LQ H+N  +Y+ S+ L+E Y+
Sbjct: 430 IEALQRHENESVYKASLNLIEKYF 453

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 166 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 224
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 343
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 344 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 403
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 404 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 458
Query: 492 TYW 494
            Y+
Sbjct: 459 KYF 461

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  406 bits (1043), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 365 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419
Query: 492 TYW 494
            Y+
Sbjct: 420 KYF 422

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 365 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419
Query: 492 TYW 494
            Y+
Sbjct: 420 KYF 422

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 370 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 492 TYW 494
            Y+
Sbjct: 425 KYF 427

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 369 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423
Query: 492 TYW 494
            Y+
Sbjct: 424 KYF 426

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 369 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423
Query: 492 TYW 494
            Y+
Sbjct: 424 KYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 370 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 492 TYW 494
            Y+
Sbjct: 425 KYF 427

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/433 (49%), Positives = 286/433 (66%), Gaps = 21/433 (4%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ S++   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P +S      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 133 IKYGAVDPLLALL-AVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRL 191
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H +D EVL D CWA+SYL+DG N++I  V++ GV P+L + L      ++ PALR +GN
Sbjct: 192 LHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGN 251
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 252 IVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 310
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV++L  A+F  +KEA WA++N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 311 VPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIIL 370
Query: 432 VCLEGLENIL----KVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487
           V L+ + NI     K+GE EK          + MI++  GL+KIE+LQ H+N  +Y+ S+
Sbjct: 371 VILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQNHENESVYKASL 421
Query: 488 KLLETYWLDDEDE 500
            L+E Y+  +E+E
Sbjct: 422 SLIEKYFSVEEEE 434

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/248 (39%), Positives = 142/248 (57%), Gaps = 15/248 (6%)
Query: 245 LPALAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
           LP +   ++S+D +    A    S  LSDG N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           QAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483
            P+ +I+   L  L NI   G  +K           Q + +A  LEK+E LQ+H+N +I 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK-----------QAVKEAGALEKLEQLQSHENEKIQ 239
Query: 484 EKSVKLLE 491
           +++ + LE
Sbjct: 240 KEAQEALE 247

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 2/196 (1%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424
           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G    L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGAEPALEQLQSS 191
Query: 425 PDPRIVTVCLEGLENI 440
           P+ +I     E LE I
Sbjct: 192 PNEKIQKEAQEALEKI 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 112/196 (57%), Gaps = 2/196 (1%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424
           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 425 PDPRIVTVCLEGLENI 440
            + +I     E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 115/205 (56%), Gaps = 13/205 (6%)
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P++ + L  P    L  ALR +  I +G + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
           EA W +SNI +G  EQIQAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE 466
           + ++  G +  L  LL  P+ +I+   L  L NI   G  +K           Q + +A 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-----------QAVKEAG 180
Query: 467 GLEKIESLQTHDNAEIYEKSVKLLE 491
            LEK+E LQ+H+N +I +++ + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 4/197 (2%)
Query: 245 LPALAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
           LP +   ++S+D +    A    S  LSDG N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           QAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 424 CPDPRIVTVCLEGLENI 440
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 13/205 (6%)
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P++ + L        + A R    I++  + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
           EA W +SNI +G  EQIQAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE 466
           + ++  G +  L  LL  P+ +I+   L  L NI   G  +K           Q + +A 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-----------QAVKEAG 180
Query: 467 GLEKIESLQTHDNAEIYEKSVKLLE 491
            LEK+E LQ+H+N +I +++ + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 44/284 (15%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V + V+ L   D  + Q EAA  L  IASG +   K ++D G V + VKLL S   +V++
Sbjct: 4   VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +A  AL NIA         ++  GG V +L +L                           
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGG-VEVLVKL--------------------------- 94
Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                         + S D EV  +A  AL+ ++ G ++ I+A+++AG    L + L   
Sbjct: 95  --------------LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 140
Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A R + NI +G D   + +++   +  L+ LL+ +    ++KEA   ++NI +
Sbjct: 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIAS 199
Query: 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401
           G    I+A+++A  +  L  LL + + +++KEA  A+ N  SGG
Sbjct: 200 GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 9/240 (3%)
Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHSNDDEVL 260
           LV LL   + + +    + A   L+    G P      +  A  +  L  L+ S D EV 
Sbjct: 7   LVKLLTSTDSETQ----KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
            +A  AL+ ++ G ++ I+A+++AG    L + L      V   A R + NI +G D   
Sbjct: 62  KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380
           + +++   +  L+ LL+ +    ++KEA   ++NI +G  E I+A+++A  +  LV LL 
Sbjct: 122 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 381 NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
           + + +++KEAA A++N  SG T   IK +V  G ++ L  LL   D  +       LENI
Sbjct: 181 STDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 51  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 107
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 166
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 225
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 281
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 55  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 111
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 112 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 170
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 171 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 229
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 230 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 285
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 286 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 340

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 57  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 113
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 114 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 172
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 173 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 231
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 232 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 287
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 288 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 342

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 52  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 108
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 109 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 167
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 168 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 226
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 227 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 282
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 283 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 337

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 58  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 114
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 115 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 173
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 174 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 232
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 233 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 288
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 289 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 343

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 56  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 112
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 113 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 171
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 172 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 230
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 231 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 286
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 287 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 341

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 56  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 112
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 113 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 171
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 172 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 230
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 231 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 286
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 287 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 341

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 52  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 108
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 109 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 167
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 168 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 226
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 227 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 282
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 283 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 337

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 54  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 110
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 169
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 228
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 284
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 41  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 97
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 98  GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 156
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 157 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 215
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 216 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 271
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 272 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 326

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 39  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 95
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 96  GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 154
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 155 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 213
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 214 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 269
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 270 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 324

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 39  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 95
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 96  GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 154
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 155 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 213
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 214 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 269
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 270 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 324

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 43  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 99
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 100 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 158
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 159 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 217
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 218 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 273
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 274 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 328

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A   +      S H +    +   G +P  V +L
Sbjct: 187 IMRS---PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 302
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 361
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 417
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	530
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	0.0
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-53
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-114
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-68
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-61
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-54
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-25
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-112
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-83
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-75
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-69
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-61
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-57
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-89
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-11
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-85
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-55
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-50
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-78
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-66
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-75
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-28
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-64
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-27
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-26
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-60
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-55
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-53
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-32
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-59
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-29
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-25
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-23
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-47
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	9e-40
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-41
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-40
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-19
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-38
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-20
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	6e-07
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	4e-13
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-13
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-11
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-10
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	8e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	9e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	9e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	7e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	9e-09
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	7e-08
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  603 bits (1555), Expect = 0.0
 Identities = 268/521 (51%), Positives = 340/521 (65%), Gaps = 14/521 (2%)

Query: 7   SKADSRRNKYK--VAVDADEGRRRREDNMVEIRKNKREESLQKKRR-------EGLQNQQ 57
              + RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             + 
Sbjct: 12  FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71

Query: 58  PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             +   +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           VPR VEF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRGK PQP
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQP 250

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
            S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNIT
Sbjct: 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNIT 369

Query: 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGC 414
           AGN EQIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGC
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429

Query: 415 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL 474
           IKPLCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + 
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC 489

Query: 475 QTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFG 515
           Q ++N +IYEK+ K++ETY+ ++ED           G  FG
Sbjct: 490 QQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNAGNTFG 530

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  573 bits (1479), Expect = 0.0
 Identities = 228/514 (44%), Positives = 307/514 (59%), Gaps = 18/514 (3%)

Query: 23  DEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV 82
             G   R   M E    K E         G  +      D+ +        ++  +V G+
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSN-QGTVNWSVEDIVKGI 66

Query: 83  WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT 142
            SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+AWALT
Sbjct: 67  NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 126

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202
           NIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV+  G 
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186

Query: 203 LVPLLAQLNG----QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDD 257
           + PLLA L            LRN TWTLSN CR K P PP D V   LP L  L+H ND 
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GNIVTG D
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377
            QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   ++  LV 
Sbjct: 307 EQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365

Query: 378 LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGL 437
           +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ V L+ +
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425

Query: 438 ENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW--L 495
            NI +  E        +    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E Y+   
Sbjct: 426 SNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480

Query: 496 DDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529
           ++ED+ + P   S+ GF F          G FNF
Sbjct: 481 EEEDQNVVPETTSE-GFAFQV---QDGAPGTFNF 510

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  563 bits (1452), Expect = 0.0
 Identities = 253/445 (56%), Positives = 316/445 (71%), Gaps = 3/445 (0%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GV 117
               +N    A        M+  ++S     Q   T +FRKLLS E +PPI+EVI + GV
Sbjct: 6   HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V RFVEFL R++   LQFE+AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+E
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QAVWALGNIAGDS  CRD VL    L PLL   + Q +L+M RNA W LSN CRGK P P
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F +VSP L  L+ L+  +D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
               V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS + K+SIKKEACWT+SNIT
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIKKEACWTISNIT 304

Query: 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 416
           AGNR QIQ VI+ANI   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIK
Sbjct: 305 AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364

Query: 417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476
           PLCDLL   D +IV V L GLENIL++GE E     T +N +  +I++A GL+KIE LQ+
Sbjct: 365 PLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQS 424

Query: 477 HDNAEIYEKSVKLLETYWLDDEDET 501
           H+N EIY+K+  L+E Y+  +++++
Sbjct: 425 HENQEIYQKAFDLIEHYFGTEDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  185 bits (470), Expect = 5e-53
 Identities = 61/354 (17%), Positives = 134/354 (37%), Gaps = 19/354 (5%)

Query: 143 NIASGTSEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIA--GDSPRCRDLVL 198
            +    ++   + +          +++++S S + +  A      +     +P   +++ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDD 257
           + G +   +  L  +   ++   + W L+N   G          + A+P    L+ S  +
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGD 316
           +V   A WAL  ++  +      V++  + P L +     +  ++   A+  + N+  G 
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLV 376
               +       L  L  LL       +  +ACW +S ++ G  ++IQAVI+A +   LV
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240

Query: 377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG 436
            LL + ++ +   A  A+ N  + G   Q + ++    ++ L  LL  P   I       
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299

Query: 437 LENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
           + NI     A+            Q + DA     + S+         +++   +
Sbjct: 300 ISNITAGNRAQI-----------QTVIDANIFPALISILQTAEFRTRKEAAWAI 342

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  350 bits (899), Expect = e-114
 Identities = 72/440 (16%), Positives = 132/440 (30%), Gaps = 24/440 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 115

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNRE---QIQAVIEAN 370
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E      AV    
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352

Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            +  +V LL         +A   +    +         L  QG I  L  LLV       
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQ 411

Query: 431 TVCLEGLENILKVGEAEK------------NLGNTDVNVFTQMIDDAEGLEKIESLQTHD 478
                G      V                  L     N    +I     +     L    
Sbjct: 412 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSP 469

Query: 479 NAEIYEKSVKLLETYWLDDE 498
              I   +  +L     D E
Sbjct: 470 IENIQRVAAGVLCELAQDKE 489

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  230 bits (589), Expect = 3e-68
 Identities = 58/383 (15%), Positives = 133/383 (34%), Gaps = 20/383 (5%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 123

Query: 228 NFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +         +  L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 242

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
              WT+ N++    +Q        ++G LV LL + + ++   AA  +SN T     +  
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 298

Query: 407 KFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 464
             +   G I+ L   ++       I    +  L ++           + +  +    +  
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS--------RHQEAEMAQNAVRL 350

Query: 465 AEGLEKIESLQTHDNAEIYEKSV 487
             GL  +  L    +     K+ 
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  212 bits (541), Expect = 2e-61
 Identities = 58/343 (16%), Positives = 112/343 (32%), Gaps = 18/343 (5%)

Query: 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209
                 +   A+P   KLL      V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269
           +     +   R    TL N    +        S  +PAL  ++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
           L         AV  AG   ++   L   +   L      +  +  G+      ++     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389
             L+N++     + +       +  + +       A++EA  +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 390 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 449
             W + N +   T +      ++G +  L  LL   D  +VT     L N+       K 
Sbjct: 244 CLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK- 298

Query: 450 LGNTDVNVFTQMIDDAEGLEKI--ESLQTHDNAEIYEKSVKLL 490
                      M+    G+E +    L+  D  +I E ++  L
Sbjct: 299 ----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  193 bits (491), Expect = 2e-54
 Identities = 60/364 (16%), Positives = 123/364 (33%), Gaps = 33/364 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL-HLTDPSQRLV 241

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP----ALPALA 249
            +V   GG+  L+  +     +  +   A   L +      +    Q +      LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 310 GNIVTGDDMQTQCVIEY---------------------QALPCLLNLLSGNYKKSIKKEA 348
                 + ++ + ++E                        +P  + LL  +  ++I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVA 477

Query: 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408
              +  + A ++E  +A+       PL  LL +    +   AA  +   +     +  K 
Sbjct: 478 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 536

Query: 409 LVIQ 412
           L ++
Sbjct: 537 LSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  108 bits (270), Expect = 5e-25
 Identities = 32/218 (14%), Positives = 80/218 (36%), Gaps = 16/218 (7%)

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N +  A +     P L + L      V+  A   V  +   +  +   +   Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
            +         +    T+ N+ + +RE + A+ ++  I  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 395 SNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT 453
            N       E  K  V   G ++ +  LL   + + + +  + L+ +    +  K     
Sbjct: 123 HNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK----- 175

Query: 454 DVNVFTQMIDDAEGLEK-IESLQTHDNAEIYEKSVKLL 490
                  +I  + G +  +  ++T+   ++   + ++L
Sbjct: 176 ------LIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  342 bits (880), Expect = e-112
 Identities = 72/440 (16%), Positives = 132/440 (30%), Gaps = 24/440 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 118

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNRE---QIQAVIEAN 370
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E      AV    
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            +  +V LL         +A   +    +         L  QG I  L  LLV       
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQ 414

Query: 431 TVCLEGLENILKVGEAEK------------NLGNTDVNVFTQMIDDAEGLEKIESLQTHD 478
                G      V                  L     N    +I     +     L    
Sbjct: 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSP 472

Query: 479 NAEIYEKSVKLLETYWLDDE 498
              I   +  +L     D E
Sbjct: 473 IENIQRVAAGVLCELAQDKE 492

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  266 bits (681), Expect = 7e-83
 Identities = 82/432 (18%), Positives = 147/432 (34%), Gaps = 23/432 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +   +   D  V  +      +L   E S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V   GGL  ++A LN +  +  L   T  L     G  +     + S    AL +++ 
Sbjct: 137 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373
              D  T+       L  L+ LL  +   ++   A   +SN+T  N +    V +   I 
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 374 PLVALLENA--EFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRI 429
            LV  +  A    DI + A  A+ + TS           + +   +  +  LL  P    
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371

Query: 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL 489
           +     GL   L +  A               + +   + ++  L    + +   ++   
Sbjct: 372 LIKATVGLIRNLALCPANH-----------APLREQGAIPRLVQLLVRAHQDTQRRTSMG 420

Query: 490 LETYWLDDEDET 501
                  +    
Sbjct: 421 GTQQQFVEGVRM 432

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  246 bits (629), Expect = 3e-75
 Identities = 74/443 (16%), Positives = 139/443 (31%), Gaps = 47/443 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +V  + S    V +   T    L  + +      V  +G + + V  LL +   +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFL 160

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRC 193
                 L  +A G  E   +++  G     V ++ + +   +       L  ++      
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH 253
           +  ++  GG+  L   L   P   +++N  WTL N      +   + +   L  L  L+ 
Sbjct: 220 KPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG 276

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI--PALRTVGN 311
           S+D  V+T A   LS L+         V + G    L   ++       I  PA+  + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 312 IVTGDD---MQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQAVI 367
           + +      M    V  +  LP ++ LL   ++      +A   +    A        + 
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW--PLIKATVGLIRNLALCPANHAPLR 394

Query: 368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGG--------------------THEQIK 407
           E   I  LV LL  A  D ++  +   +                                
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454

Query: 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 467
            +     I     LL  P   I  V    L  + +  EA             + I+    
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA------------AEAIEAEGA 502

Query: 468 LEKIESLQTHDNAEIYEKSVKLL 490
              +  L    N  +   +  +L
Sbjct: 503 TAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  230 bits (588), Expect = 4e-69
 Identities = 59/353 (16%), Positives = 116/353 (32%), Gaps = 21/353 (5%)

Query: 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199
           A+ N+ +         +   A+P   KLL      V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV 259
              +  ++  +     +   R    TL N    +        S  +PAL  ++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
           L  A   L  L         AV  AG   ++   L   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379
              ++       L+N++     + +       +  + +       A++EA  +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 380 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 439
            +    + +   W + N +   T +      ++G +  L  LL   D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL--QTHDNAEIYEKSVKLL 490
           +       K            M+    G+E +     +  D  +I E ++  L
Sbjct: 293 LTCNNYKNK-----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  208 bits (531), Expect = 6e-61
 Identities = 58/387 (14%), Positives = 138/387 (35%), Gaps = 21/387 (5%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + LL ++   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTK-LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 126

Query: 228 NFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 245

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
              WT+ N++    +Q        ++G LV LL + + ++   AA  +SN T     +  
Sbjct: 246 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 301

Query: 407 KFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 464
             +   G I+ L   ++       I    +  L ++           + +  +    +  
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT--------SRHQEAEMAQNAVRL 353

Query: 465 AEGLEK-IESLQTHDNAEIYEKSVKLL 490
             GL   ++ L    +  + + +V L+
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLI 380

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  198 bits (504), Expect = 5e-57
 Identities = 63/371 (16%), Positives = 120/371 (32%), Gaps = 34/371 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 244

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +      +    Q        LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369
                 + ++ + ++E                       C    +I A +      +   
Sbjct: 422 TQQQFVEGVRMEEIVE----------------------GCTGALHILARDVHNRIVIRGL 459

Query: 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 429
           N I   V LL +   +I++ AA  +         E  + +  +G   PL +LL   +  +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 430 VTVCLEGLENI 440
            T     L  +
Sbjct: 518 ATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  121 bits (306), Expect = 9e-30
 Identities = 49/287 (17%), Positives = 86/287 (29%), Gaps = 30/287 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQL 133
           L  +V  + S+D  V          L +         V + G +   V  +LR  D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 134 QFEAAWALTNIASGTSEHTKV---VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              A  AL ++ S   E       V  H  +P+ VKLL+ PS     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
           P     +  QG +  L+  L  +      R  +   +     +     + V     AL  
Sbjct: 387 PANHAPLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           L     + +                     +      P   + L  P  ++   A   + 
Sbjct: 446 LARDVHNRI--------------------VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNIT 356
            +    +   + +    A   L  LL S N    +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG--VATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  283 bits (727), Expect = 3e-93
 Identities = 93/248 (37%), Positives = 139/248 (56%), Gaps = 13/248 (5%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
            LP +   ++S+D +    A    S +    N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           QAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190

Query: 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483
            P+ +I+   L  L NI   G  +K           Q + +A  LEK+E LQ+H+N +I 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK-----------QAVKEAGALEKLEQLQSHENEKIQ 239

Query: 484 EKSVKLLE 491
           +++ + LE
Sbjct: 240 KEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  272 bits (698), Expect = 7e-89
 Identities = 84/241 (34%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +  Q+ 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQIL 71

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V+  G L  L+  L+  P   +L+ A W LSN   G  +     + + ALPAL  L+ 
Sbjct: 132 QAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           S ++++L +A WALS ++ G N++ QAV EAG   +L +   H +  +   A   +  + 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

Query: 314 T 314
           +
Sbjct: 251 S 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
           R         + +  +   L + +   +  A    S   S G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALV 60

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479
            LL  P+ +I+   L  L NI             +     Q + DA  L  +  L +  N
Sbjct: 61  QLLSSPNEQILQEALWALSNIAS---------GGNEQ--IQAVIDAGALPALVQLLSSPN 109

Query: 480 AEIYEKSVKLL 490
            +I ++++  L
Sbjct: 110 EQILQEALWAL 120

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  260 bits (667), Expect = 9e-85
 Identities = 77/201 (38%), Positives = 112/201 (55%), Gaps = 2/201 (0%)

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
                LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+ 
Sbjct: 9   HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE 68

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
            +L  AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G 
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGG 127

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
            EQIQAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L 
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLE 186

Query: 420 DLLVCPDPRIVTVCLEGLENI 440
            L    + +I     E LE +
Sbjct: 187 QLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  182 bits (464), Expect = 9e-55
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VID GA+P  V+LL 
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           SP++ + ++A+WAL NIA         V+  G L  L+  L+  P   +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNI 123

Query: 230 CRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288
             G  +     +   ALPAL  L+ S ++++L +A WALS ++ G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 289 RLAEFLMHPSPSVLIPALRTVGNIVT 314
           +L +   H +  +   A   +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  171 bits (436), Expect = 1e-50
 Identities = 77/245 (31%), Positives = 110/245 (44%), Gaps = 43/245 (17%)

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                 +P  V+ L SP     + A+  L  IA         V+  G             
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG------------- 54

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274
                                        ALPAL  L+ S ++++L +A WALS ++ G 
Sbjct: 55  -----------------------------ALPALVQLLSSPNEQILQEALWALSNIASGG 85

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L+ 
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
           LLS +  + I +EA W +SNI +G  EQ QAV EA  +  L  L  +    I+KEA  A+
Sbjct: 146 LLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204

Query: 395 SNATS 399
               S
Sbjct: 205 EKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
           R         + +  +V  L + +    + A   +S   S G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALV 60

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479
            LL  P+ +I+   L  L NI             +     Q + DA  L  +  L +  N
Sbjct: 61  QLLSSPNEQILQEALWALSNI---------ASGGNEQ--IQAVIDAGALPALVQLLSSPN 109

Query: 480 AEI 482
            +I
Sbjct: 110 EQI 112

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  259 bits (663), Expect = 7e-78
 Identities = 73/434 (16%), Positives = 137/434 (31%), Gaps = 25/434 (5%)

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +DV+     +  +            D   QY  T   R      R+    E +  G+   
Sbjct: 55  DDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIP 109

Query: 121 FVEFLLREDYP-QLQFEAAWALTNIASGTSEH-TKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             +F        Q   E +  L +       +     +   A+P   KLL      V  +
Sbjct: 110 STQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNK 169

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   +  ++        ++ S   +  ++  +     +   R  + TL N    +     
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
              S  +PAL +++ S  D VL  A   L  L         AV  AG   ++   L   +
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 289

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              L      +  +  G+      ++       L+N++   Y           V  + + 
Sbjct: 290 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR-TYTYEKLLWTTSRVLKVLSV 348

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
                 A++EA  +  L   L +    + +   W + N +   T +      ++G +  L
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTL 404

Query: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL--QT 476
             LL   D  +VT     L N+       K            M+    G+E +     + 
Sbjct: 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNK-----------MMVCQVGGIEALVRTVLRA 453

Query: 477 HDNAEIYEKSVKLL 490
            D  +I E ++  L
Sbjct: 454 GDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  226 bits (578), Expect = 8e-66
 Identities = 70/449 (15%), Positives = 138/449 (30%), Gaps = 42/449 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 377

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +           Q        LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369
                 + ++ + ++                      EAC    +I A +      +   
Sbjct: 555 TQQQFVEGVRMEEIV----------------------EACTGALHILARDIHNRIVIRGL 592

Query: 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 429
           N I   V LL +   +I++ AA  +         E  + +  +G   PL +LL   +  +
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 650

Query: 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL 489
            T     L  + +    +     +              L + E +  ++  ++       
Sbjct: 651 ATYAAAVLFRMSEDKPQDYKKRLSVELT--------SSLFRTEPMTWNETGDLGLDIGAQ 702

Query: 490 LETYWLDDEDETMPPGDASQPGFGFGGNG 518
            E      +D +     +   G    G  
Sbjct: 703 GEPLGYRQDDPSYRSFHSGGYGQDAMGMD 731

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  240 bits (613), Expect = 6e-75
 Identities = 55/339 (16%), Positives = 107/339 (31%), Gaps = 34/339 (10%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
            +          P +++              +          A   L  + S   EH   
Sbjct: 20  CETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDEEHRHA 68

Query: 155 VIDHGAVPIFVKLLYSPSD-----------DVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           + + G +    +LL    +            +R  A  AL N+       +  + S  G 
Sbjct: 69  MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHL-IHSNDDEVL 260
           +  L          + +     L N            +    ++ AL    +    +  L
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 261 TDACWALSYLS-DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP-------ALRTVGNI 312
                AL  LS   T +K       G    L   L + S +  +         LR V ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           +  ++   Q + E   L  LL  L  ++  +I   AC T+ N++A N +  +A+ +   +
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307

Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 411
             L  L+ +    I   +A A+ N  +    +     ++
Sbjct: 308 SMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIM 346

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  113 bits (284), Expect = 8e-28
 Identities = 46/223 (20%), Positives = 76/223 (34%), Gaps = 14/223 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +VA + S    +Q    +  R L         + +   G V   +E  L        
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 135 FEAAWALTNIASGTSE-HTKVVIDHGAVPIFVKLLYSPSDD----VREQAVWALGNIAG- 188
                AL N+++  +E    +    GA+   V  L   S      + E     L N++  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 189 --DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPA 244
              +   R ++     L  LL  L     L+++ NA  TL N     P  Q     +  A
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 306

Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAG 285
           +  L +LIHS    +   +  AL  L        K   ++  G
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPG 349

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  101 bits (254), Expect = 8e-24
 Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 42/296 (14%)

Query: 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
           L  +R    T   +             P +    + + +  +  +  A   L  LS    
Sbjct: 13  LEQIRAYCETCWEWQEAH--------EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 276 DKIQAVIEAGVFPRLAEFL-----------MHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324
            +  A+ E G    +AE L            H S ++   A   + N+  GD      + 
Sbjct: 65  HR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 325 EYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENA 382
             +  +  L+  L     + +++     + N++       +  + E   +  L+      
Sbjct: 124 SMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182

Query: 383 EF-DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP-------RIVTVCL 434
           +     K    A+ N ++  T  +     + G +  L   L                  L
Sbjct: 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL 242

Query: 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
             + +++   E  +           Q++ +   L+ +       +  I   +   L
Sbjct: 243 RNVSSLIATNEDHR-----------QILRENNCLQTLLQHLKSHSLTIVSNACGTL 287

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  215 bits (548), Expect = 3e-64
 Identities = 60/387 (15%), Positives = 123/387 (31%), Gaps = 36/387 (9%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V+  L     + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQ-YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + ++ ALP LA  +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341
             +G+   L  ++ +   +           +    ++  +   E       L   + N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 342 KSIKKEACWTVSNITAGNREQIQA-------------VIEANIIGPLVALLENAEFDIKK 388
                  C++  +    N                   +  ++ I   + L+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 389 EAA-WAISNATSG----GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443
           EA   A+ N T+      +       + +  +  +  LL   +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 444 GEAEKNLGNTDVNVFTQMIDDAEGLEK 470
               + +GN      T+++    G   
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTS 388

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  113 bits (284), Expect = 2e-27
 Identities = 46/308 (14%), Positives = 89/308 (28%), Gaps = 28/308 (9%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL------ 168
           SG              P++ F A   L N++S  +    +    G +   +  +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQPKLSMLR 220
               D   E  +  L N++            Q       A            +    M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 221 NATWTLSNFCRG-KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-- 277
           N    L       K              L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 278 ---IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
                  ++    P++A  L   +  V+      + N+          V+  Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 335 LLSGNYKKSIKKE-----ACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD-IKK 388
           LL+ +   +   E     AC+TV N+ A   +  +    ++++  ++ L  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 389 EAAWAISN 396
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  111 bits (278), Expect = 1e-26
 Identities = 65/452 (14%), Positives = 133/452 (29%), Gaps = 73/452 (16%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + S +  VQ       R  L    +    E  R   +   V  L R    ++Q
Sbjct: 46  ICKLVDLLRSPNQNVQQAAAGALR-NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----------------SDDVREQ 178
            +    L N++S   +  K  +   A+P+    +  P                  +V   
Sbjct: 105 KQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNFCRG 232
           A   L N++      R  + +  GL+  L           +     + N    L N    
Sbjct: 163 ATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221

Query: 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
                  +V      L +   +   E  +  C++        N+    + E    P+   
Sbjct: 222 LDA----EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK--- 274

Query: 293 FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352
                                      +  +    A+   LNL+  + K +  +     +
Sbjct: 275 --------------------------GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL 308

Query: 353 SNITAGNRE-----QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407
            N+TA              ++   +  +  LL++   D+ +  A  +SN +    H  + 
Sbjct: 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR---HPLLH 365

Query: 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 467
            ++       +  LL            + L +        +NL  +      +    +  
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSE-DILSSACY---TVRNLMASQPQ-LAKQYFSSSM 420

Query: 468 LEKIESL-QTHDNAEIYEKSVKLLETYWLDDE 498
           L  I +L ++  + +  E +  LL   W   E
Sbjct: 421 LNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 85.7 bits (211), Expect = 5e-18
 Identities = 34/227 (14%), Positives = 76/227 (33%), Gaps = 25/227 (11%)

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
             +P     + S D++      + + +         Q V + G   +L + L  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
             A   + N+V               +   ++LL       I+K+    + N+++ +  +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--E 119

Query: 363 IQAVIEANIIGPLVALL----------------ENAEFDIKKEAAWAISNATSGGTHEQI 406
           ++  + A+ +  L   +                E  + ++   A   + N +S     + 
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD-AGRQ 178

Query: 407 KFLVIQGCIKPLCDLL------VCPDPRIVTVCLEGLENILKVGEAE 447
                 G I  L   +         D + V  C+  L N+    +AE
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE 225

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 78.7 bits (193), Expect = 8e-16
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 35/326 (10%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
             LA+ V  P +     N  +        D  V +  T   R L S   +        SG
Sbjct: 130 PVLADRVIIPFSGWCDGNSNMSRE---VVDPEVFFNATGCLRNL-SSADAGRQTMRNYSG 185

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++   +   ++      + +       +    +   ++  +       +    + +    
Sbjct: 186 LIDSLMA-YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL-EYNARNAYTE 243

Query: 177 EQAVWALGNIAGD---------------SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           + +     N +                 +P+    +     +   L  +    K + L  
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 222 ATWTLSNFCRGKPQPPFD------QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
               L N    K                 LP +A L+ S + +V+      LS +S   +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RH 361

Query: 276 DKIQAVIEAGVFPRLAEFL------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
             +  V+   VFP +   L         S  +L  A  TV N++       +       L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNI 355
             ++NL   +      + A   +S++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 75.6 bits (185), Expect = 9e-15
 Identities = 30/274 (10%), Positives = 71/274 (25%), Gaps = 20/274 (7%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM 318
              A  AL  L   +                   L    +  +       + N+ + D++
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 319 QTQCVIEYQALPCLLNLLSGNYK---------------KSIKKEACWTVSNITAGNREQI 363
           +    +   ALP L + +   +                  +   A   + N+++ +  + 
Sbjct: 121 KE--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
                + +I  L+A ++N     + +     +               +    + L     
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 424 CPDPRI-VTVCLEGLENILKVGEAEKNLGNTDVN 456
                   T C     + +     +  L   + N
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  205 bits (523), Expect = 2e-60
 Identities = 60/298 (20%), Positives = 104/298 (34%), Gaps = 26/298 (8%)

Query: 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDD 174
           +          A   L  + S   EH   + + G +    +LL              S  
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 175 VREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           +R  A  AL N+  GD      L   +G +  L+AQL       + +     L N     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRA 274

Query: 234 PQPPFDQV--SPALPALAHL-IHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVFPR 289
                  +    ++ AL    +    +  L     AL  LS   T +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 290 LAEFLMHPSPSVLIP-------ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342
           L   L + S +  +         LR V +++  ++   Q + E   L  LL  L  ++  
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSL 393

Query: 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400
           +I   AC T+ N++A N +  +A+ +   +  L  L+ +    I   +A A+ N  + 
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  190 bits (483), Expect = 9e-55
 Identities = 60/369 (16%), Positives = 112/369 (30%), Gaps = 43/369 (11%)

Query: 18  VAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPV 77
           +    D+ R RRE  ++ + +  R         +                          
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM-----------------DQ 152

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL----------LR 127
               + +              KL   E       +   G +    E L            
Sbjct: 153 DKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTND 210

Query: 128 EDYPQLQFEAAWALTNIASGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
                L+  A  ALTN+  G   +   +    G +   V  L S S+D+++     L N+
Sbjct: 211 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270

Query: 187 AGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGKPQPPFDQVS 242
           +       +  +   G +  L+       K S L++     W LS  C    +     V 
Sbjct: 271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVD 329

Query: 243 PALPALAHLI----HSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLM 295
            AL  L   +     +N   ++      L  +S       D  Q + E      L + L 
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389

Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
             S +++  A  T+ N+   +    + + +  A+  L NL+     K I   +   + N+
Sbjct: 390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNL 448

Query: 356 TAGNREQIQ 364
            A    + +
Sbjct: 449 MANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  187 bits (476), Expect = 1e-53
 Identities = 71/441 (16%), Positives = 149/441 (33%), Gaps = 65/441 (14%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-S 115
              ++         K+E +  +++ + ++D   + + +   R LL++  S      +R S
Sbjct: 16  PRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQS 69

Query: 116 GVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164
           G +P  ++ L   D             + +  A+ AL NI     +  +   +   + + 
Sbjct: 70  GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLL 129

Query: 165 VKL------------------------LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
            ++                        + +P +     AV  L  ++ D    R  +   
Sbjct: 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNEL 188

Query: 201 GGLVPLLAQL----------NGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPALPAL 248
           GGL  +   L          N    +++ R A   L+N   G    +     +   + AL
Sbjct: 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 248

Query: 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPS-PSVLIPAL 306
              + S  +++       L  LS   +   +  + E G    L E  +     S L   L
Sbjct: 249 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308

Query: 307 RTVGNI-VTGDDMQTQCVIEYQALPCLLNLLSGNYKKS---IKKEACWTVSNIT---AGN 359
             + N+     + +        AL  L+  L+   + +   I +     + N++   A N
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
            +  Q + E N +  L+  L++    I   A   + N ++    +  + L   G +  L 
Sbjct: 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLK 427

Query: 420 DLLVCPDPRIVTVCLEGLENI 440
           +L+      I       L N+
Sbjct: 428 NLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  127 bits (321), Expect = 4e-32
 Identities = 57/394 (14%), Positives = 123/394 (31%), Gaps = 55/394 (13%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP------------S 172
           LL       + + +  L  + S + +    +   G +P+ ++LL+              S
Sbjct: 37  LLSMLGTHDKDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGS 95

Query: 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232
            + R +A  AL NI    P        +  ++ LL Q+                   C  
Sbjct: 96  KEARARASAALHNIIHSQP-DDKRGRREIRVLHLLEQIR-------------AYCETCWE 141

Query: 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
             +       P +    + + +  +  +  A   L  LS     +  A+ E G    +AE
Sbjct: 142 WQE----AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAE 196

Query: 293 FL-----------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNY 340
            L            H S ++   A   + N+  GD      +   +  +  L+  L    
Sbjct: 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256

Query: 341 KKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFD-IKKEAAWAISNAT 398
           +  +++     + N++       +  + E   +  L+      + +   K    A+ N +
Sbjct: 257 ED-LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315

Query: 399 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGN--TDVN 456
           +  T  +     + G +  L   L           +E    IL      +N+ +      
Sbjct: 316 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL------RNVSSLIATNE 369

Query: 457 VFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
              Q++ +   L+ +       +  I   +   L
Sbjct: 370 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  204 bits (520), Expect = 4e-59
 Identities = 73/456 (16%), Positives = 148/456 (32%), Gaps = 65/456 (14%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L S+ +  P     R   +P  +  +L      ++  AA  L ++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIA-MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            +P+ V LL  P  +V   A  AL NI+ G     +  + +  G+  L+  L     + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI------------------HSNDDEVL 260
               T TL N          + V  AL AL   +                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV----------- 309
           T+    L  +S   ++  + + E         F++           + V           
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 310 ---------------------GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348
                                 N  T      + + + + +   ++LL  +   +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 349 CWTVSNITAGNR---EQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE 404
              + N+ AG       I++ + +   +  +  LL N    + K A+ A+ N        
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV---DA 386

Query: 405 QIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 464
           + K L+ +  I  L   L            E  + ++ +      +   ++    + + +
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSE--DTVISILNTINEVIAENLE-AAKKLRE 443

Query: 465 AEGLEKIESLQTHDNAE--IYEKSVKLLETYWLDDE 498
            +G+EK+  +    N        +  +L+T W   E
Sbjct: 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  121 bits (305), Expect = 1e-29
 Identities = 58/401 (14%), Positives = 122/401 (30%), Gaps = 59/401 (14%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
           P  Q E     +  +               +P  + +L    D V+  A   L ++   +
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP--ALPAL 248
            + +  V    G+  L+  L+  PK  +   A   L N   G+ Q     +     +PAL
Sbjct: 80  DKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 249 AHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL----- 302
             L+  + D ++       L  LS   + K++ V  A     L + ++ P          
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNE 196

Query: 303 ------------------------------IPALRTVGNIV---------TGDDMQTQCV 323
                                            LR    +V               +   
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256

Query: 324 IEYQALPCLLNLLSGNYKKS-----IKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL 378
           +    +  L NL    +++       ++ A    +N         + + +  ++   ++L
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316

Query: 379 LENAE-FDIKKEAAWAISNATSGGTHEQI---KFLVIQGCIKPLCDLLVCPDPRIVTVCL 434
           L+ ++   I + +A AI N  +G           L  +  +  + DLL     R+V    
Sbjct: 317 LKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAAS 376

Query: 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ 475
             L N+      ++ +G   +    + +   +        +
Sbjct: 377 GALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE 417

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  107 bits (268), Expect = 6e-25
 Identities = 60/387 (15%), Positives = 111/387 (28%), Gaps = 70/387 (18%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQL 133
           +PV+V  +      V        +  +S  R       +     VP  V  L +     L
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALK-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP------------------SDDV 175
                  L N++S   +  K+ I   A+      +  P                   + V
Sbjct: 151 TEVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208

Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNF 229
                  L N++ +    R  +    GLV  L  +             ++ N    L N 
Sbjct: 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268

Query: 230 CR---------------------------GKPQPPFDQVSPALPALAHLIHSNDDEVLTD 262
                                         +      Q       ++ L  S    +L  
Sbjct: 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEA 328

Query: 263 ACWALSYLSDGT----NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318
           +  A+  L  G          A+ +      +A+ L +    V+  A   + N+      
Sbjct: 329 SAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-- 386

Query: 319 QTQCVIEYQALPCLLNLLSGNYKKSIKK-------EACWTVSNITAGNREQIQAVIEANI 371
           + + +I   A+P L+  L G  + S              T++ + A N E  + + E   
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446

Query: 372 IGPLVALLENAEFDIK--KEAAWAISN 396
           I  LV + ++     K  + AA  +  
Sbjct: 447 IEKLVLINKSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  101 bits (253), Expect = 5e-23
 Identities = 56/317 (17%), Positives = 105/317 (33%), Gaps = 43/317 (13%)

Query: 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273
           P     R +  +L +  +G P PP  +  P LP +  ++    D V ++A   L +L   
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR 78

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC-VIEYQALPCL 332
            +     V +    P L   L HP   V + A   + NI  G D   +  +     +P L
Sbjct: 79  NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL------------- 379
           + LL       + +    T+ N+++ +  +++ V  A  +  L   +             
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVIIPHSGWEREPNE 196

Query: 380 -----ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL------VCPDPR 428
                      +    A  + N +S  +  + K     G +  L  ++         D +
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256

Query: 429 IVTVCLEGLENILKVGEAEK--------------NLGNTDVNVFTQMIDDAEGLEK-IES 473
           +V  C+  L N+      E               N   T      +++   E +   I  
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316

Query: 474 LQTHDNAEIYEKSVKLL 490
           L+      I E S   +
Sbjct: 317 LKESKTPAILEASAGAI 333

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  165 bits (418), Expect = 4e-47
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 3/236 (1%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
           S  +P       +    Q +  A   L ++              G   +  + L + +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
           +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A + +S   R + 
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 235 QPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                         L   +     ++   + + L  L  G  +    +   G+  +L   
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349
           +           L  + ++VT      +     +    L  LL    +   + E  
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  145 bits (366), Expect = 9e-40
 Identities = 50/303 (16%), Positives = 107/303 (35%), Gaps = 22/303 (7%)

Query: 202 GLVPLLAQLNGQPK-LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVL 260
           GLVP  + + GQ   +  +++    LS               P  P       + D +  
Sbjct: 12  GLVPRGSHMRGQRGEVEQMKSCLRVLSQ--------------PMPPTAGEAEQAADQQER 57

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
             A   L+ L +  ++       +G+   +  +L   +  +   A + +G          
Sbjct: 58  EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 117

Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380
           + V+   AL  LL LL  +   +++ +A + +S +       +   +  +    L+  ++
Sbjct: 118 EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 177

Query: 381 NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
                +K ++A+ + N   G   E    L   G ++ L  L+           L  L ++
Sbjct: 178 QQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236

Query: 441 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWLDDED 499
           +                  +++       + + LQ H+   E  E   KLL+T +    D
Sbjct: 237 VTDFPQGVRECREPELGLEELLR-----HRCQLLQQHEEYQEELEFCEKLLQTCFSSPAD 291

Query: 500 ETM 502
           ++M
Sbjct: 292 DSM 294

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.5 bits (224), Expect = 2e-20
 Identities = 31/237 (13%), Positives = 79/237 (33%), Gaps = 5/237 (2%)

Query: 30  EDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV-WSNDSG 88
              M        + + Q++R   L+    L  +++      +L  + ++V     +  +G
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 89  VQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +++                 I E+V+  G + + +  L R+    ++ +A +A++ +   
Sbjct: 98  LRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
                   +      + ++ +      ++ ++ + L N+    P  +  + S  G+V  L
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM-GMVQQL 214

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264
             L          +    L +     PQ   +   P L     L H        +  
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEY 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  158 bits (400), Expect = 2e-41
 Identities = 59/397 (14%), Positives = 123/397 (30%), Gaps = 31/397 (7%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-TKVV 155
             ++         +       +  +++  L     + +     A+T + +G  +   +VV
Sbjct: 228 LARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVV 286

Query: 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK 215
              G + + + +  +  +  +  A   L   +         +  QG  V +L +L     
Sbjct: 287 AREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VDILKRLYHSKN 343

Query: 216 LSMLRNATWTLSNFC-----RGKPQPPFDQVSPALPALAH---LIHSNDDEVLTDACWAL 267
             +   A   L             +P  D  +  L        +    D ++   A   L
Sbjct: 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGL 403

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327
           +YL+     K + + +      L +     + S L   + T  N+    + Q        
Sbjct: 404 AYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM------ 457

Query: 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387
            LP ++ L     K+ I +E      +      ++I  +    I   L AL +    + +
Sbjct: 458 -LPEMIELAKFA-KQHIPEEHEL---DDVDFINKRITVLANEGITTALCALAKTESHNSQ 512

Query: 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE 447
           +  A  ++     G  E    +V +G +K L  + +    +      + L  I      E
Sbjct: 513 ELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570

Query: 448 KNLGNTDVNV-----FTQMIDDAEGLEKIESLQTHDN 479
            +                +  D   LE  ESL    N
Sbjct: 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  154 bits (390), Expect = 3e-40
 Identities = 61/465 (13%), Positives = 130/465 (27%), Gaps = 88/465 (18%)

Query: 65  APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
             G A KL             D  ++          L+++     + +     +   ++ 
Sbjct: 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMD- 428

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHT-------------------------------- 152
           L R       +       N+ +   +                                  
Sbjct: 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488

Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212
            V+ + G       L  + S + +E     L  + G     R  V+ +GG+  LL     
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALE 547

Query: 213 QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSP--ALPALAHLIHSNDDEVLT-DACWALS 268
             +    R+AT  L+       P+  F        +  L +L+  +   +   ++  AL+
Sbjct: 548 GTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606

Query: 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328
            L+       Q +I+     ++  +LM     +                           
Sbjct: 607 NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYL--------------------------- 639

Query: 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388
                            + A   + N+              + +  L  L E+ + +   
Sbjct: 640 ----------------TRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETAT 683

Query: 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK 448
             A A++  TS       K L I   +  L  L+  P P +    +  + N++    A +
Sbjct: 684 ACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI---NAGE 740

Query: 449 NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493
            +        T +++   GL ++         E+  + +   E Y
Sbjct: 741 EIAKKLFE--TDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 92.2 bits (228), Expect = 1e-19
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              +   +E       L S+  +  + + I        +E+ L ED+  L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASM--NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           +            ++  V     L     ++       AL  I   S +C + +L+    
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTD 262
           + +L  L   P  ++       + N      +          +  L+ L    DD     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  140 bits (354), Expect = 1e-38
 Identities = 39/214 (18%), Positives = 66/214 (30%), Gaps = 20/214 (9%)

Query: 118 VPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           + R V  L  +   P     AA  + +     SE  K V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
                AL N+  +    +  V    G+  LL  L     L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 237 PFDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 280
               ++ AL  L   I                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 281 VIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +    G+   L  ++            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 87.3 bits (216), Expect = 9e-20
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 22/222 (9%)

Query: 240 QVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
            +   L     ++ ++      ++ A   + +     ++  + V +     +L + L   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  V       + N+V  D+     V E   +P LL +L        KK+    + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 358 GNREQIQAVIEA------NIIGPLVALLEN--------AEFDIKKEAAWAISNATSGGTH 403
            ++ +   + EA      NII P     E          +FDI       + N +S G  
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

Query: 404 EQIKFLVIQGCIKPLCDLL------VCPDPRIVTVCLEGLEN 439
            +       G I  L   +        PD +    C+  L N
Sbjct: 185 GRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 62.3 bits (151), Expect = 4e-11
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  ++  +   +  VQ       R  L  E +    EV     VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----------------SDDVREQ 178
            +    L N++S   +  K ++   A+    + +  P                  D+   
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNFC 230
               L N++      R  +    GL+  L         + QP      N    L N  
Sbjct: 171 VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 89.4 bits (221), Expect = 3e-20
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 21/197 (10%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++ +    L + +   L  E A A   +A    E  K +I     P+         +  +
Sbjct: 70  MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTK 124

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
               +AL  IA  +P     ++     + +L+  N + KL+ L        NF     + 
Sbjct: 125 INVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGEN 174

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F  V+P LP + +L+H  D+ V   A  AL +L+   +   + VI      +  E L  
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND 228

Query: 297 PSPSVLIPALRTVGNIV 313
            S  V       +  ++
Sbjct: 229 TSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 32/209 (15%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           V+ + +E LL +D   +   A   +  IA    +  + ++      +F  L  S +  + 
Sbjct: 33  VLKKLIE-LLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
           ++   A G +A + P           ++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
               ++  +     ++ S + E    A   +  + + +   +   +     PR+   L  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIE 325
               V   A+  + ++ T +D   + VI+
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVIK 221

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 28/282 (9%), Positives = 77/282 (27%), Gaps = 69/282 (24%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +   ++LL      V + A+  +  IA       + +L +     L + L     + + 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKK-----LFSLLKKSEAIPLT 87

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
           +          + KP    + V   +P L       D++   +  +AL  ++      + 
Sbjct: 88  QEIAKAFGQMAKEKP----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
           +++           L   +                                         
Sbjct: 144 SIVRD-----FMSMLSSKNRED-------------------------------------- 160

Query: 340 YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399
                K  A   +  +   + + +   +       ++ LL + +  ++  A  A+ +  +
Sbjct: 161 -----KLTALNFIEAMGENSFKYVNPFLPR-----IINLLHDGDEIVRASAVEALVHLAT 210

Query: 400 GGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441
                      ++  +    + L      +     EG+  +L
Sbjct: 211 LNDK-------LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 73.7 bits (181), Expect = 9e-15
 Identities = 39/317 (12%), Positives = 83/317 (26%), Gaps = 75/317 (23%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L +  +    +E+ R          LL +     +  +A  L                  
Sbjct: 16  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG-----------GQD 54

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
           AV + ++     +   R+   + LG I     +C D V +      L           + 
Sbjct: 55  AVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVR 108

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A  + +  C+  P          +             V     +A+S ++D       
Sbjct: 109 ATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
                   P L   L  P+  V   A   +      +              C + +L   
Sbjct: 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK 204

Query: 340 YKKSIKKEACWTVSNITAGNREQIQAVIEA--------------------NIIGPLVALL 379
             + ++ EA   +S     ++  +  + +                      ++  L  +L
Sbjct: 205 N-EEVRIEAIIGLSYR--KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTML 261

Query: 380 ENAE-FDIKKEAAWAIS 395
              +  +I   A   + 
Sbjct: 262 YKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 28/267 (10%), Positives = 70/267 (26%), Gaps = 52/267 (19%)

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
             + +A    G                      L +L          ++   L    RG 
Sbjct: 5   YQKRKASKEYGLYNQCKKLN----------DDELFRLLDDHNSLKRISSARVLQL--RGG 52

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                     A+          +        + L  +        +   +          
Sbjct: 53  QD--------AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMA 99

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L   S  V   A+ +       + + +  ++E         + + +   ++++   + +S
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVE------QSQITAFDKSTNVRRATAFAIS 153

Query: 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG 413
            I   ++  I           L+ LL++   D++  AA+AI+      +           
Sbjct: 154 VI--NDKATIP---------LLINLLKDPNGDVRNWAAFAININKYDNSD---------- 192

Query: 414 CIKPLCDLLVCPDPRIVTVCLEGLENI 440
                 ++L   +  +    + GL   
Sbjct: 193 IRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 62.8 bits (153), Expect = 4e-13
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 11 SRRNKYK-VAVDADEGRRRREDNMVEIRKNKREESLQKKRR 50
          +R +++K    D+ E RRRR +  VE+RK K+++ + K+R 
Sbjct: 2  ARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 71.0 bits (173), Expect = 4e-13
 Identities = 50/361 (13%), Positives = 119/361 (32%), Gaps = 62/361 (17%)

Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212
           K ++    +    + +++ S + ++Q V  + NI          +  QG +  +L  L  
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLAN 509

Query: 213 QPKLS--MLRNATWTLSNFCRG-KPQPPFDQVSP--ALPALAHLIHSNDDEVLT------ 261
           +  +   +       L+       P   F + S   A+P L  L+  +            
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569

Query: 262 --------DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
                   +A  AL+ L+       + V +  V  ++                 T+ N++
Sbjct: 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY--------------WSTIENLM 615

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373
             +++  Q       L  + N++S     + K      + N  +     I          
Sbjct: 616 LDENVPLQR----STLELISNMMSHPLTIAAKFFN---LENPQSLRNFNI---------- 658

Query: 374 PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV--CPDPRIVT 431
            LV LL+ ++ + ++  A   +N  +       + L  +  I+    +      D  +  
Sbjct: 659 -LVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQ 717

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI--ESLQTHDNAEIYEKSVKL 489
             L     +    E   + G  +V     ++ + + L+     SL+  D+   +  ++ +
Sbjct: 718 RLLMLFFGLF---EVIPDNGTNEVY---PLLQENQKLKDALNMSLKRGDSGPEFSAAIPV 771

Query: 490 L 490
           +
Sbjct: 772 I 772

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 55/394 (13%), Positives = 118/394 (29%), Gaps = 51/394 (12%)

Query: 109 IEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           I+E +R+ +   +++ L R  +   +Q  +A  L    S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
           +        E +V AL  ++  +     +  ++     LL  +  Q     L      ++
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402

Query: 228 NFCRGKPQPPFDQVSPALPALAHLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
           N      +                           E             D      + ++
Sbjct: 403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYIL 454

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN- 339
              +   L   + + SP+     +R + NI    +   Q     Q  A+  +L  L+   
Sbjct: 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA---QQGAVKIILEYLANKQ 511

Query: 340 -YKKSIKKEACWTVSN--ITAGNREQIQAVIEANIIGPLVALLENAEFDIKK-------- 388
              + I+   C  ++   I        +     N I  L  LL  +              
Sbjct: 512 DIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571

Query: 389 ------EAAWAISNATSGGTHEQIK----FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 438
                 EA  A++N  S  T +  +     +  +     + +L++  +  +    LE + 
Sbjct: 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELIS 631

Query: 439 NIL--------KVGEAEKNLGNTDVNVFTQMIDD 464
           N++        K    E      + N+  +++  
Sbjct: 632 NMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL 665

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 90  QYECTTQFRKLLSIERSPPIEEVIRSGVVPRF---VEFLLREDYPQLQFEAAWALTNIAS 146
            YE       L S E S   E          +   +E L+ ++   LQ      ++N+ S
Sbjct: 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635

Query: 147 GTSEHTKVVIDHG------AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
                     +           I VKLL     + +        NIA   P     +L++
Sbjct: 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695

Query: 201 GGLVPLLAQL 210
             L+    Q+
Sbjct: 696 KELIENAIQV 705

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 47/249 (18%), Positives = 70/249 (28%), Gaps = 56/249 (22%)

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL 216
           D   V +++K L   S  VR  A +ALG I     R           V  L +       
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERA----------VEPLIKALKDEDA 64

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276
            + R A   L                 A+  L   +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
                        L + L      V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 -------ERAVEPLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 337 SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
                  +++ A   +  I  G            +   +  L E      +K A   +  
Sbjct: 153 KDED-GWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVAVNYLET 200

Query: 397 ATSGGTHEQ 405
             S   H  
Sbjct: 201 HKSFNHHHH 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 2e-12
 Identities = 68/442 (15%), Positives = 133/442 (30%), Gaps = 132/442 (29%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS---GTSEH 151
           +   +L     S          +V +FVE +LR +Y        + ++ I +     S  
Sbjct: 62  SGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMM 108

Query: 152 TKVVID-----HGAVPIFVKLLYSPSDDV-REQAVWALGN-IAGDSPRCRDLVL-SQGG- 202
           T++ I+     +    +F K       +V R Q    L   +    P  +++++    G 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPA-KNVLIDGVLGS 161

Query: 203 ----LVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
               +   +   + + +  M     W  L N C   P    + V   L  L + I  N  
Sbjct: 162 GKTWVALDVCL-SYKVQCKMDFKIFWLNLKN-CN-SP----ETVLEMLQKLLYQIDPNWT 214

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALRTVGNIVTGD 316
                        SD +   I+  I + +   L   L      + L+        ++   
Sbjct: 215 S-----------RSDHS-SNIKLRIHS-IQAELRRLLKSKPYENCLL--------VL--L 251

Query: 317 DMQTQCVIEYQALPC--LL--------NLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366
           ++Q         L C  LL        + LS      I  +                  +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-------------HHSMTL 298

Query: 367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD 426
               +   L+  L+    D+ +E                                    +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREV----------------------------LTT----N 326

Query: 427 PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA-EGLEKIESLQTHDNAEIYEK 485
           PR +++  E + + L   +   N  + + +  T +I+ +   LE  E  +  D   ++  
Sbjct: 327 PRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 486 SVK----LLETYWLD-DEDETM 502
           S      LL   W D  + + M
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVM 405

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 71/406 (17%), Positives = 118/406 (29%), Gaps = 144/406 (35%)

Query: 2   SLRPNSKADSR-RNKYKVAVDADEGRRRREDNMVEIRKN-KREESLQKKRREGLQNQQP- 58
            ++   +  S     Y    D     R   DN V  + N  R +    K R+ L   +P 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPA 150

Query: 59  ---------------LANDVNAPGTAKKLENLPVMVAGV-WSNDSGVQYECTT------Q 96
                          +A DV         +    M   + W N       C +       
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-----CLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEM 201

Query: 97  FRKLLS---------IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
            +KLL           + S  I+  I S +       L  + Y          L      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYEN-------CL------ 247

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPL 206
                 +V+                 +V+    W   N+      C+ L+ ++   +   
Sbjct: 248 ------LVL----------------LNVQNAKAWNAFNL-----SCKILLTTRFKQVTDF 280

Query: 207 LAQLNGQPKLSMLRNATWT-------LSNFCRGKPQ--PP-FDQVSP-ALPALAHLIHSN 255
           L+            + T T       L  +   +PQ  P      +P  L  +A  I   
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-- 338

Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGV-----------FPRLAEFLMHPSPSVLIP 304
            D + T   W          DK+  +IE+ +           F RL+ F   P PS  IP
Sbjct: 339 -DGLAT---W--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---P-PSAHIP 388

Query: 305 A--LRTV-GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS-IKK 346
              L  +  +++  D M             ++N L   +K S ++K
Sbjct: 389 TILLSLIWFDVIKSDVMV------------VVNKL---HKYSLVEK 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 52/314 (16%), Positives = 80/314 (25%), Gaps = 105/314 (33%)

Query: 250 HLIHSNDDEVLTDAC-WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALR 307
           H+I S D    T    W L  LS      +Q  +E  +     +FLM P       P++ 
Sbjct: 53  HIIMSKDAVSGTLRLFWTL--LSKQEE-MVQKFVEEVLRINY-KFLMSPIKTEQRQPSMM 108

Query: 308 TVGNIVTGDDMQT-------------QCVIEYQALPCLLNLLSGNY----------KKSI 344
           T   I   D +               Q  ++ +    LL L               K  +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWV 166

Query: 345 KKEAC--------------WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390
             + C              W    +   N    + V+E      L  LL   + D    +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLE-----MLQKLL--YQIDPNWTS 215

Query: 391 AWAISNATSGGTHEQIKFLVIQGCIKPLCD-LL----VCPDPRIVTV----CLEGLENIL 441
               S+      H     L      KP  + LL    V  + +        C        
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSC-------- 266

Query: 442 KVGEAEKNLGNT-DVNVFTQ----------MIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
                 K L  T    V             +   +  L   E         +  K     
Sbjct: 267 ------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK------SLLLK----- 309

Query: 491 ETYWLDDEDETMPP 504
              +LD   + +P 
Sbjct: 310 ---YLDCRPQDLPR 320

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 66.4 bits (161), Expect = 1e-11
 Identities = 54/320 (16%), Positives = 108/320 (33%), Gaps = 50/320 (15%)

Query: 111 EVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           +   + ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP----LLAQLNGQPKLSMLRNAT 223
           +   S  V+E   W +G IA       + +  Q  L       L  L   PK++   N +
Sbjct: 420 MNDQSLQVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCS 474

Query: 224 WTLSNFCRGKPQPPFDQVSPALPA-LAHLIHS-----NDDEVLTDACWALSYLSDGTNDK 277
           WT+ N      +     +    PA +  LI +     N+      A  AL+ + +   D 
Sbjct: 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534

Query: 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL----- 332
           +     + +   + + L           +    N +T +D Q+   ++   L  L     
Sbjct: 535 VAETSAS-ISTFVMDKLGQ--------TMSVDENQLTLEDAQSLQELQSNILTVLAAVIR 585

Query: 333 -----------------LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
                              LL       I+ +  + +S + A   +  +  +E      L
Sbjct: 586 KSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYL 644

Query: 376 VALLENAEFDIKKEAAWAIS 395
           +  L   +  +   A   I+
Sbjct: 645 LKALNQVDSPVSITAVGFIA 664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 43/309 (13%), Positives = 91/309 (29%), Gaps = 24/309 (7%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +  V R  ++P  +  L   L      ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225
           + L      VR    W L   A            +  +  LL ++    K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEA 284
            +             ++  L  L         + L     A+  L+D   +   +     
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ 525

Query: 285 GVFPRLAEFL--MHPSPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLSGNY 340
            + P L +    +      L P L  + ++ T         C   YQ    L+       
Sbjct: 526 MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 585

Query: 341 K-------------KSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFDI 386
                         K     A   +S +  G    I+ ++  +NI+  +   +++   ++
Sbjct: 586 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 645

Query: 387 KKEAAWAIS 395
           ++ +   + 
Sbjct: 646 RQSSFALLG 654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 50.9 bits (121), Expect = 8e-07
 Identities = 53/368 (14%), Positives = 101/368 (27%), Gaps = 51/368 (13%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG-LVPLLAQLNGQPKL--- 216
           +P+ V  +     D+        G   GD       +       + +LA +     L   
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI 360

Query: 217 -----SMLRNATW--------TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDA 263
                 +L +  W         L     G  Q     +   +P L   +      V +  
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420

Query: 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323
           CW LS  +     +        +   L + ++  +  V   A      +    +     +
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE---EEACTEL 477

Query: 324 IEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381
           + Y    L  L+   S  Y+          +  +       +       ++ P +    N
Sbjct: 478 VPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN 536

Query: 382 AEFDIKKEAAWAISNATSGGTHEQIKFL-----VIQGCIKPLCDLLV------------- 423
              D  K+    +   +S  T  Q  FL     V Q C+  +   L              
Sbjct: 537 MLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE 596

Query: 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483
            PD   + V L+ L  + +                 Q++  +  L  +         E+ 
Sbjct: 597 APDKDFMIVALDLLSGLAEGLGGN----------IEQLVARSNILTLMYQCMQDKMPEVR 646

Query: 484 EKSVKLLE 491
           + S  LL 
Sbjct: 647 QSSFALLG 654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 60.9 bits (146), Expect = 7e-10
 Identities = 47/407 (11%), Positives = 129/407 (31%), Gaps = 40/407 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLS----IERSPPIEEVIRSGVVPRFVEFLLREDY 130
           +  +   + S+   ++   +   + ++           +   +   +  R    + +++ 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             +Q EA   + ++ S              +   +  L SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             C ++V     +  LL++L+    +S  R     ++   R       + +   +P +  
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
             + +DDE+      A          ++   +   +             ++ +  L    
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII-------------NICLKYLTYDP 309

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS------IKKEACWTVSNITAGNREQIQ 364
           N    D+ + +  ++              Y         +++ A   +  + +   E + 
Sbjct: 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369

Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAI------SNATSGGTHEQIKFLVIQGCIKPL 418
              +  +   L++  +  E ++K +   A       +        +       +  +  L
Sbjct: 370 EFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTML 428

Query: 419 CDLLVCPDPRIVTVCLEGL-ENILKVGEAEKNLGNTDVNVFTQMIDD 464
              +    P IV    + + E  +K  +   N+    VNV    +  
Sbjct: 429 QSQV----PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ 471

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.9 bits (120), Expect = 9e-07
 Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 25/234 (10%)

Query: 123  EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
            +         ++  A  +L  +        ++ +      + ++   SPS++V+  A +A
Sbjct: 824  DVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYA 879

Query: 183  LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSNFCRGKPQPPFDQV 241
            LG+I+  +            L  +L ++  QPK   +L ++   + +        P+  V
Sbjct: 880  LGSISVGNLPEY--------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--V 929

Query: 242  SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
                  L       ++         L         K+  +    + PRL  +L+  S   
Sbjct: 930  ENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYA 981

Query: 302  LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
                +  V   ++ D  Q    +    +   L  L      ++++ A  T ++ 
Sbjct: 982  RSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSA 1033

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.0 bits (145), Expect = 9e-10
 Identities = 62/343 (18%), Positives = 114/343 (33%), Gaps = 32/343 (9%)

Query: 107 PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166
           P +   +++ +   F   L  +D P ++  AA  L   A          +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L     D VR  AV A  NIA   P+     L    ++P L Q        +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEAL----VMPTLRQAAEDKSWRVRYMVADKF 266

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 285
           +     K   P    +  +PA  +L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQ--KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345
           + P + E +   +  V       +  +     +     IE+  LP  L  L         
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLSPI--LGKDNTIEH-LLPLFLAQL--------- 372

Query: 346 KEACWTVSNITAGNREQIQAVIEAN-----IIGPLVALLENAEFDIKKEAAWAISNATSG 400
           K+ C  V      N + +  VI        ++  +V L E+A++ ++      +      
Sbjct: 373 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432

Query: 401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443
              E     +   C+  L D        I       L+ +++ 
Sbjct: 433 LGVEFFDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEK 471

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 29/231 (12%), Positives = 73/231 (31%), Gaps = 20/231 (8%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVK 166
            ++     ++P F+   L+++ P+++      L  +    G  + ++ ++     P  V+
Sbjct: 356 GKDNTIEHLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL-----PAIVE 409

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L       VR   +  +  +A        +      L  L          ++   AT  L
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLA----GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNL 465

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
                   +      +  +P +  +    +        + ++ LS+      Q +    +
Sbjct: 466 KKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHM 520

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
            P +      P  +V     +++  I    D      ++ +  P L  L  
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQ 568

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 53/219 (24%)

Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG---------------- 116
           E + + +  +  +   V+        K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 117 ---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               V   ++  L+++   ++  AA AL  I            D  AV   +K L     
Sbjct: 74  DERAVEPLIK-ALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
            VR  A +ALG I  +              V  L +        + ++A   L       
Sbjct: 122 FVRIAAAFALGEIGDERA------------VEPLIKALKDEDGWVRQSAADALGEI---- 165

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
                        A+  L  +        A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 40/263 (15%), Positives = 71/263 (26%), Gaps = 68/263 (25%)

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +      +     P            V +  +        + R A + L     GK    
Sbjct: 2   RGSHHHHHHT--DPE----------KVEMYIKNLQDDSYYVRRAAAYAL-----GKIGDE 44

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                 A+  L   +   D  V   A  AL  + D                 L + L   
Sbjct: 45  -----RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDE 88

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G I  GD+         +A+  L+  L       ++  A + +  I  
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDW-FVRIAAAFALGEI-- 134

Query: 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP 417
           G+            + PL+  L++ +  +++ AA A+      G                
Sbjct: 135 GDER---------AVEPLIKALKDEDGWVRQSAADALGEI---GGER---------VRAA 173

Query: 418 LCDLLVCPDPRIVTVCLEGLENI 440
           +  L          V +  LE  
Sbjct: 174 MEKLAETGTGFARKVAVNYLETH 196

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 55.6 bits (133), Expect = 9e-09
 Identities = 45/239 (18%), Positives = 82/239 (34%), Gaps = 26/239 (10%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQG--GLVPLLAQLNGQPKL 216
           A+ + ++L     +  R +A  ALG I   +    R +VL +     +  L+Q N +  +
Sbjct: 34  ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTI 93

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV---LTDACWALSYLSDG 273
             LR   + + +   G           A   L  L+ S DD +     D    L  L D 
Sbjct: 94  KALRALGYLVKDVPMGS-----KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS 148

Query: 274 --TNDKIQAVIEAGV-------FPRLAEFLMHPS-PSVLIPALRTVGNIVTGDDMQTQCV 323
                 I  ++ +         F      L   +    L   L  + +++  D+     +
Sbjct: 149 KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVEL 208

Query: 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
               AL  L   LS    +++K      +S I  G   +  A I       +  L+++ 
Sbjct: 209 ----ALDVLEKALSFPLLENVKI-ELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 34/208 (16%), Positives = 66/208 (31%), Gaps = 13/208 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L +++     +D   +        ++L    S     V+    +  F+   L ++  ++ 
Sbjct: 35  LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALSQENEKVT 92

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG--NIAGDSPR 192
            +A  AL  +       +K  +   A    V LL SP D +R + +  L       DS  
Sbjct: 93  IKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL 150

Query: 193 CRDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFCRGKPQPPFDQVS-PAL 245
            R  +        L  ++ G          S        + +      Q   + +   AL
Sbjct: 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELAL 210

Query: 246 PALAHLIHSNDDEVLTDACWALSYLSDG 273
             L   +     E +      +S + DG
Sbjct: 211 DVLEKALSFPLLENVKIELLKISRIVDG 238

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 34/143 (23%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
            + ++   ++ + + AL+ +               A    ++ L +    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           N      R           V  L +L       +   A  +L     G  +         
Sbjct: 68  NFQ--DERA----------VEPLIKLLEDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 245 LPALAHLIHSNDDEVLTDACWAL 267
             A+  L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS 172
           +        +E  L  +  +++  AAW + N             D  AV   +KLL   S
Sbjct: 39  MGDEAFEPLLE-SLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86

Query: 173 DDVREQAVWALGNIAGDS 190
             VR  A  +L  I G+ 
Sbjct: 87  GFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 34/142 (23%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +      +   +  VR     AL  +  ++              PLL  L+      + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDEA------------FEPLLESLS-NEDWRIR 59

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A W + NF          Q   A+  L  L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 280 AVIEAGVFPRLAEFLMHPSPSV 301
            V  A     + +     +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 11/60 (18%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           LL +D   ++  AA +L  I                     KL  + +   R+ AV  L 
Sbjct: 81  LLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 35/153 (22%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           S  L      +   +  V  D   ALS + D      +A         L E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361
              A   +GN    D+         +A+  L+ LL  +    ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLLEDDS-GFVRSGAARSLEQI--GGER 104

Query: 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
                    +   +  L E      +K A   +
Sbjct: 105 ---------VRAAMEKLAETGTGFARKVAVNYL 128

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 54.0 bits (129), Expect = 7e-08
 Identities = 43/345 (12%), Positives = 96/345 (27%), Gaps = 34/345 (9%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156
              L+ + ++   +  I    +      +  ++  +++  +     ++ S  +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE--IFIK 119

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPK 215
               V + + LL      VR   V  L ++      + + ++L     V  L  L    +
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 216 LSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYL 270
             +  +    L    R             A   L  +I     S+   V+ D    L  L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV---------------LIPALRTVGNIVTG 315
               N       E     R+  +      +                L+  L +  N    
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299

Query: 316 DDMQTQCVIEYQALPCLLNL-LSGNYKKSIKKEACWTVSNITAGNREQIQAVIE------ 368
                + + +   L  L  + ++      I  E   TVS +  G +              
Sbjct: 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN 359

Query: 369 ----ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 409
               A ++  +  + E   F ++    +            Q + +
Sbjct: 360 PPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 29/177 (16%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
               +  +L  D   L++  A+ +    +GT  ++ V        +    +   +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            AV ALG +                +  ++  L+      +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
                 A+  L  L     D V   A  ALS +     +K+         P++A+  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN--------PQVADIN 690

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 51/334 (15%), Positives = 110/334 (32%), Gaps = 34/334 (10%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +       +VP  + F+   ++    + +  A  A   I  G        +   A+P  +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNAT 223
           +L+  PS  VR+ A W +G I        +  ++   L PLL  L      +  +  N  
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283
           W  S+      +   D          + + S+ + ++              N+   +  E
Sbjct: 472 WAFSSLAEAAYE-AADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530

Query: 284 A-----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
           +         +     +  +  V++  L+ V        +Q +  I+  +     N L  
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQV--------LQMESHIQSTSDRIQFNDLQS 582

Query: 339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE--FDIKKEAAWAISN 396
                     C T+ N+    + Q    I   ++  L+ + ++      ++++A  A+S 
Sbjct: 583 L--------LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST 634

Query: 397 ATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430
                  E +K++  +     L   L       V
Sbjct: 635 LVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQV 666

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 52/326 (15%), Positives = 92/326 (28%), Gaps = 37/326 (11%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL---VLSQ 200
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +             Q
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 201 GGLVPLLAQLNGQPKLSML-----------------------RNATWTLSNFCRGKPQPP 237
           G      ++   +  L  L                       + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           S  V   A  TVG I     +       +    L CL+  LS      +    CW  S++
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAE--PRVASNVCWAFSSL 477

Query: 356 TAGNREQIQAVIEANIIGPLVALLEN 381
                E     +  +   P    L +
Sbjct: 478 AEAAYEAAD--VADDQEEPATYCLSS 501

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 47/282 (16%), Positives = 80/282 (28%), Gaps = 33/282 (11%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS---- 199
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +              
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 200 ---------------QGGLVPLLAQLN-------GQPKLSMLRNATWTLSNFCRGKPQPP 237
                             LVP+L Q              +  + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLS 337
           S  V   A  TVG I     +       +    L CL+  LS
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	530
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.84
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.78
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.78
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.76
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.76
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.74
3grl_A	651	General vesicular transport factor P115; vesicle t	99.73
3grl_A	651	General vesicular transport factor P115; vesicle t	99.71
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.69
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.68
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.66
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.65
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.63
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.61
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.58
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.58
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.58
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.58
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.57
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.52
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.44
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.42
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.41
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.39
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.39
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.27
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.1
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.05
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.88
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.87
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.86
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.86
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.85
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.8
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.8
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.76
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.71
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.7
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.56
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.54
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.46
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.46
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.45
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.44
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.36
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.33
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.32
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.19
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.18
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.15
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.15
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.15
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.12
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.1
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.02
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.82
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.78
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.78
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.74
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.66
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.52
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.4
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.39
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.38
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.33
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.2
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.1
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.06
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.03
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.95
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.84
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.59
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.41
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.08
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.08
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.98
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.98
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.94
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.84
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.47
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.27
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.13
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.11
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.96
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.6
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.56
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.54
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.95
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.39
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	92.78
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	92.58
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.53
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	91.26
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.55
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	88.39
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	88.03
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	87.39
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	86.83
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	86.77
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	86.3
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	85.33
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	85.22
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	85.15
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	84.16
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	84.15
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	83.93
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	83.89
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	83.39
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	82.91
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	81.72
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	80.41
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	80.13

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=5.6e-76  Score=607.60  Aligned_cols=518  Identities=46%  Similarity=0.748  Sum_probs=404.0

Q ss_pred             CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCC-CCccCCCCCchhhhcCCHHH
Q 009636            1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQ-PLANDVNAPGTAKKLENLPV   77 (530)
Q Consensus         1 ~~~~~~~-~~~~~~~~~k~-~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~l~~   77 (530)
                      |+++++. .+++|+++||+ +.+++|+||||+++.++|||+||++.+.|||+.....+. .++..............++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            7787776 67899999998 899999999999999999999999999999987432222 12221111111222247899


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009636           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (530)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  157 (530)
                      +++.++++|++.|+.|+..++++++.+.+++++.+++.|++|.|+++|..++++.++.+|+|+|+|++.++++.+..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999998888999999999999999999987666999999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhhhccCC
Q 009636          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~L~~~~  233 (530)
                      .|++|.|+.++.+++..+++.|+|+|+||+.+++.+|+.+...|++++|+.++....    ...+.+.++|++++++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999995322    2457889999999999987


Q ss_pred             -CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       234 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                       +........+++|.|+.++.+++++++..++|+|++++....+..+.+...|+++.|+.+|.++++.++.+++++|+|+
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             5556667789999999999999999999999999999999988888899999999999999999999999999999999


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  392 (530)
                      +.+++..+..+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++.+...+++.|+++.|+.++.+++.+++.+|+|
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence            999999999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHH
Q 009636          393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE  472 (530)
Q Consensus       393 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  472 (530)
                      +|+|++.+++++++.+|++.|++++|+++|..+|++++..++++|.+++..++...     ..+.+..+|+++||+++|+
T Consensus       400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie  474 (529)
T 3tpo_A          400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIE  474 (529)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTCHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-----ChHHHHHHHHHCCcHHHHH
Confidence            99999998899999999999999999999999999999999999999999887643     3567899999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhCCCCCCCC---CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009636          473 SLQTHDNAEIYEKSVKLLETYWLDDEDET---MPPGDASQPGFGFGGNGNPPAPSGGFNF  529 (530)
Q Consensus       473 ~l~~~~~~~v~~~a~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (530)
                      .||+|+|++||++|..||++||+++++++   .|++.+  ++|+|+.++   .++|+|+|
T Consensus       475 ~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~f~f  529 (529)
T 3tpo_A          475 ALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS--EGFAFQVQD---GAPGTFNF  529 (529)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHC--------------------------------------
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCC--cccccCCCC---CCCCCCCC
Confidence            99999999999999999999998766554   566543  379998665   56799999

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=5.2e-65  Score=522.55  Aligned_cols=489  Identities=46%  Similarity=0.760  Sum_probs=393.4

Q ss_pred             hhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc
Q 009636           29 REDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP  108 (530)
Q Consensus        29 r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~  108 (530)
                      |....++.|+++++....+.++....+++....+. .......-..++.+++.++|+|++.|+.|+..+|++++.+++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~pp   92 (510)
T 3ul1_B           14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADI-GSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP   92 (510)
T ss_dssp             ----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred             CCcccHHHHHHHHHhhccCCccccCCccccchhhh-ccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCch
Confidence            44456777788887777777766544333211111 11111111378999999999999999999999999999988999


Q ss_pred             HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC
Q 009636          109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (530)
Q Consensus       109 ~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~  188 (530)
                      ++.+++.|++|.|+++|+.++++.+|.+|+|+|+||+.++++.+..+++.|++|.|+.+|.+++..+++.|+|+|+||+.
T Consensus        93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~  172 (510)
T 3ul1_B           93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  172 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999876668999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHH
Q 009636          189 DSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDA  263 (530)
Q Consensus       189 ~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a  263 (530)
                      +++.+|+.+.+.|++++|+.++....    ...+++.++|++++++.+. +........+++|.|+.++.+++++++..+
T Consensus       173 d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A  252 (510)
T 3ul1_B          173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  252 (510)
T ss_dssp             TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             CCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999995322    2457889999999999987 555666778999999999999999999999


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchh
Q 009636          264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS  343 (530)
Q Consensus       264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  343 (530)
                      +|+|++++....+..+.+...|+++.|+.+|.+.+..++..++++|+|++.+++..+..+++.|+++.|..+|.++ ++.
T Consensus       253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~  331 (510)
T 3ul1_B          253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTN  331 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHH
T ss_pred             HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHH
Confidence            9999999999888888899999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009636          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  423 (530)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~  423 (530)
                      +++.|+|+|+|++.+++.+...+++.|+++.|+.++.+++.+++++|+|+|+|++.+++.+++.+|++.|++++|+++|+
T Consensus       332 v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~  411 (510)
T 3ul1_B          332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS  411 (510)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC--
Q 009636          424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET--  501 (530)
Q Consensus       424 ~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~~--  501 (530)
                      .+|++++..++++|.++++.+++..     ..+.++.+|+++||+++|+.||+|+|++||++|..||++||+++++++  
T Consensus       412 ~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~  486 (510)
T 3ul1_B          412 AKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQN  486 (510)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--------
T ss_pred             CCCHHHHHHHHHHHHHHHHHhHhcc-----chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccc
Confidence            9999999999999999999887643     356789999999999999999999999999999999999999776654  


Q ss_pred             -CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009636          502 -MPPGDASQPGFGFGGNGNPPAPSGGFNF  529 (530)
Q Consensus       502 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (530)
                       .|++.+  ++|.|+.++   .++|+|||
T Consensus       487 ~~~~~~~--~~~~~~~~~---~~~~~~~~  510 (510)
T 3ul1_B          487 VVPETTS--EGFAFQVQD---GAPGTFNF  510 (510)
T ss_dssp             -----------------------------
T ss_pred             cCCCCCc--cccccCCCC---CCCCCCCC
Confidence             566543  478998766   57799999

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=7.6e-65  Score=526.47  Aligned_cols=501  Identities=80%  Similarity=1.253  Sum_probs=403.9

Q ss_pred             CCCCCCCCchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHH
Q 009636            1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA   80 (530)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   80 (530)
                      |+++|+.++++|+++||++++++|+|+||+++.++|||+||++.+.|||++....+.. +............+.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~l~~lv~   81 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAP-VPASAATGVDKKLESLPAMIG   81 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccc-cccccccchhhhHHHHHHHHH
Confidence            6778877889999999999999999999999999999999999999999974322211 000111112223467999999


Q ss_pred             hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009636           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (530)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~  160 (530)
                      .|.+++++++..|++.|+++++....++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus        82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~  161 (528)
T 4b8j_A           82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA  161 (528)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence            99999999999999999999988655788999999999999999998765899999999999999988999999999999


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (530)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  240 (530)
                      ++.|+.+|.++++.+++.|+|+|++|+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+......
T Consensus       162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  241 (528)
T 4b8j_A          162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ  241 (528)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence            99999999999999999999999999999888999999999999999999667789999999999999999987777778


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009636          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (530)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~  320 (530)
                      ..+++|.|+.++.+.++.++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus       242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  321 (528)
T 4b8j_A          242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT  321 (528)
T ss_dssp             HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence            89999999999999999999999999999999888888889999999999999999999999999999999999999888


Q ss_pred             HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      +.+++.|+++.|+.+|.++.++.++..|+|+|+|++.+++..+..+++.|+++.|+.++.+++++++..|+|+|+|++..
T Consensus       322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            89999999999999998765789999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009636          401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA  480 (530)
Q Consensus       401 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~  480 (530)
                      ++++...++++.|+++.|+.+|..++++++..++++|.+++..++......+...+.+...+++.||+++|+.|++|+++
T Consensus       402 ~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~  481 (528)
T 4b8j_A          402 GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN  481 (528)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCH
Confidence            78899999999999999999999999999999999999999988764432222356789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCC
Q 009636          481 EIYEKSVKLLETYWLDDEDETM  502 (530)
Q Consensus       481 ~v~~~a~~il~~~~~~~~~~~~  502 (530)
                      +|+++|..++++||..+++++.
T Consensus       482 ~v~~~a~~il~~~~~~e~~~~~  503 (528)
T 4b8j_A          482 EIYEKAVKILEAYWMDEEDDTM  503 (528)
T ss_dssp             HHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHHHHCCCcccccc
Confidence            9999999999999998777663

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3.2e-59  Score=484.17  Aligned_cols=491  Identities=54%  Similarity=0.825  Sum_probs=424.3

Q ss_pred             CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcccc---CCCCCccCC---CCCchh-hhcCCHHHH
Q 009636            8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLANDV---NAPGTA-KKLENLPVM   78 (530)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~---~~~~~~~~~---~~~~~~-~~~~~l~~l   78 (530)
                      .++.|++.||+ + ++++|+|+||++..++|||+||++.+.|||+....   .+..++.+.   ...... ...+.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l   92 (530)
T 1wa5_B           13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   92 (530)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence            56789999999 8 89999999999999999999999999999997532   111001000   011110 122579999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009636           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      +..|++++++.+..|+..|+++++....+++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..++..
T Consensus        93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~  172 (530)
T 1wa5_B           93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  172 (530)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence            99999999999999999999999875567788899999999999999987339999999999999999888999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009636          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (530)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~  237 (530)
                      |+++.|+.+|.++++.+++.|+|+|++|+.+.+..+..+...|+++.|+.++ .+.+..++..++|+|++|+... +...
T Consensus       173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~  251 (530)
T 1wa5_B          173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  251 (530)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999999999999999888999999999999999999 5588999999999999999987 6667


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~  317 (530)
                      .....+++|.|+.++.+.++.++..++|+|++++...+.....+++.|+++.|+.+|.+.++.++..|+++|++++.+++
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~  331 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  331 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence            77789999999999999999999999999999998888778888899999999999999999999999999999999888


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      ...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++.++.+++.|+++.|+.++.++++.++..|+|+|+|+
T Consensus       332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l  410 (530)
T 1wa5_B          332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  410 (530)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            8888889999999999999998 999999999999999999899999999999999999999999999999999999999


Q ss_pred             hcCCCH--HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh
Q 009636          398 TSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ  475 (530)
Q Consensus       398 ~~~~~~--~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~  475 (530)
                      +..+.+  +...++++.|+++.|+.++...++.++..++++|.+++..++..........++++..+.+.||+++|..|+
T Consensus       411 ~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~  490 (530)
T 1wa5_B          411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ  490 (530)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG
T ss_pred             HhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH
Confidence            987666  888899999999999999999999999999999999998876532110012466899999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCCCC
Q 009636          476 THDNAEIYEKSVKLLETYWLDDEDE  500 (530)
Q Consensus       476 ~~~~~~v~~~a~~il~~~~~~~~~~  500 (530)
                      +|++++|+++|..+|++||..+++|
T Consensus       491 ~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          491 QNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             GCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             cCCCHHHHHHHHHHHHHHCCccccc
Confidence            9999999999999999999876654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.5e-46  Score=381.71  Aligned_cols=426  Identities=59%  Similarity=0.938  Sum_probs=385.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .++.+++.++++++.++..|+..|+++++....+..+.+++. |++|.|+++|.+++++.++..|+++|.+++.++++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            379999999999999999999999999875446677888887 9999999999988349999999999999999888888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+++.|+++.|+.++.++++.+++.|+|+|++++.+.+..+..+...|+++.|+.++..+.+..++..++|+|++++..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            88899999999999999999999999999999999998888999999999999999995457899999999999999988


Q ss_pred             C-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          233 K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       233 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      . +........+++|.|+.++.++++.++..++|+|.+++....+....+...|+++.|+.++.+.++.++..|+++|++
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            6 555556668999999999999999999999999999998877777888889999999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAA  391 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  391 (530)
                      ++.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++...+.+++.|+++.|+.++.++++++|..|+
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~  339 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA  339 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9998888888888999999999999998 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009636          392 WAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI  471 (530)
Q Consensus       392 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  471 (530)
                      |+|+|++.+++++..+.+++.|+++.|+.++..++++++..++++|.+++..++..........++|...|.+.||+++|
T Consensus       340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l  419 (450)
T 2jdq_A          340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI  419 (450)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHH
Confidence            99999998777888898999999999999999999999999999999999877653211111245789999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhCCCCCCC
Q 009636          472 ESLQTHDNAEIYEKSVKLLETYWLDDEDE  500 (530)
Q Consensus       472 ~~l~~~~~~~v~~~a~~il~~~~~~~~~~  500 (530)
                      ..|+++++.+|++.|..+|++||++++++
T Consensus       420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          420 EFLQSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            99999999999999999999999877654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=7.1e-40  Score=342.37  Aligned_cols=366  Identities=15%  Similarity=0.122  Sum_probs=318.2

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh-
Q 009636           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-  149 (530)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~-  149 (530)
                      .++.++++|.++  +++++..|++.|..+...  .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.+++ 
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence            367788888887  899999999999998644  34444555 5899999999999987 8999999999999998652 


Q ss_pred             ----------------------------hh---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh
Q 009636          150 ----------------------------EH---TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL  198 (530)
Q Consensus       150 ----------------------------~~---~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~  198 (530)
                                                  ..   .+.+++.|++|.|+.+++++++.++++|+|+|+||+.+. .+|..+.
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv  533 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVV  533 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence                                        11   267889999999999999999999999999999999764 5899999


Q ss_pred             hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC-h--hhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCC
Q 009636          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-F--DQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGT  274 (530)
Q Consensus       199 ~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~-~--~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~  274 (530)
                      +.|++++|+.++ .+.+...++.|+|+|.+|+....... +  ....+++|.|+.+|.++. ...+..++|+|.||+..+
T Consensus       534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~  612 (810)
T 3now_A          534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN  612 (810)
T ss_dssp             HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence            999999999999 66678899999999999997642111 1  123568999999998653 344578999999999998


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      ++..+.+++.|+++.|+.++.++++.++..|+++++||+.+.+.+...+...|.++.|+.++.+. +..++++|+|+|+|
T Consensus       613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan  691 (810)
T 3now_A          613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI  691 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999997765544432379999999999998 99999999999999


Q ss_pred             HhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC---ChHHH
Q 009636          355 ITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP---DPRIV  430 (530)
Q Consensus       355 l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~---~~~~~  430 (530)
                      ++.+++.+++.+++ .|+++.|+.++.+++.++++.|+|+|.|++.+ +.++..++.+.|++++|+.+++.+   +++++
T Consensus       692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~  770 (810)
T 3now_A          692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAR  770 (810)
T ss_dssp             HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH
T ss_pred             HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHH
Confidence            99988899999998 89999999999999999999999999999985 578899999999999999999755   78999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 009636          431 TVCLEGLENILKVGEA  446 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~  446 (530)
                      ..++++|.++++++.-
T Consensus       771 e~Al~aL~~ll~~g~~  786 (810)
T 3now_A          771 EVATQCLAAAERYRII  786 (810)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCc
Confidence            9999999999998864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=321.81  Aligned_cols=369  Identities=18%  Similarity=0.163  Sum_probs=295.5

Q ss_pred             hhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------HHHHHHHH
Q 009636           70 KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDY-----------PQLQFEAA  138 (530)
Q Consensus        70 ~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~-----------~~i~~~a~  138 (530)
                      .+++.++.++..+.+.+++.   ..+.|..+...  .+....+++.|++|.|+++|+..+.           ++++.+|+
T Consensus        29 ~~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~  103 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKDD---MSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS  103 (458)
T ss_dssp             ----------------CCHH---HHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHHH---HHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence            35678899999999888773   33444444322  3444788999999999999997432           79999999


Q ss_pred             HHHHHHhcCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHhhhCCCchhh
Q 009636          139 WALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPRCR  194 (530)
Q Consensus       139 ~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~--~~-----i~~-------~a~~~L~nl~~~~~~~~  194 (530)
                      |+|+||+.+.++..+...+.+++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +++|
T Consensus       104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R  182 (458)
T 3nmz_A          104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR  182 (458)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence            99999999999999988888888          66777776542  12     444       999999999766 7799


Q ss_pred             hhHhhcCChHHHHHhhcC----------CCchhHHHHHHHHhhhhccCCCCCChhh--hhchHHHHHHhhcCCChhHHHH
Q 009636          195 DLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLTD  262 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~~~  262 (530)
                      +.+.+.|++++|+.++..          ..+..+++.|+|+|.|||.+.+......  ..|++|.|+.+|.+++++++..
T Consensus       183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~  262 (458)
T 3nmz_A          183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV  262 (458)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence            999999999999999931          2357789999999999998864332222  4677999999999999999999


Q ss_pred             HHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHHHHhhcCC
Q 009636          263 ACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGN  339 (530)
Q Consensus       263 a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~  339 (530)
                      ++|+|.+++.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.+.
T Consensus       263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~  342 (458)
T 3nmz_A          263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR  342 (458)
T ss_dssp             HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC
Confidence            99999999985 566778888999999999975 557889999999999999985554444555 789999999999887


Q ss_pred             Cch---hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009636          340 YKK---SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG  413 (530)
Q Consensus       340 ~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  413 (530)
                      .+.   .+++.|+|+|.|++.   +++++++.+++.|+++.|+.+|.+++..++++|+|+|.|++.+ ++++...+.+.|
T Consensus       343 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G  421 (458)
T 3nmz_A          343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMG  421 (458)
T ss_dssp             CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHT
T ss_pred             CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCC
Confidence            222   499999999999997   7889999999999999999999999999999999999999975 678999999999


Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~  445 (530)
                      +++.|+.+|.+++++++..++++|.+|+...+
T Consensus       422 ~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          422 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999997653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.8e-38  Score=327.39  Aligned_cols=368  Identities=25%  Similarity=0.375  Sum_probs=327.0

Q ss_pred             cCCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      .+.+|.|+++|.. +++.+|..|+++|.+++++. ......+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence            3789999999974 56899999999999999874 456678889999999999999998 99999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009636          151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~  225 (530)
                      .+..+++.|+++.|+.++..++     ..+...++|+|++++.+...........++++.|+.++ .+.+.+++..++|+
T Consensus       196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a  274 (529)
T 3tpo_A          196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  274 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            9999999999999999997643     45678999999999987765555555677899999999 88899999999999


Q ss_pred             hhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHH
Q 009636          226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (530)
Q Consensus       226 L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~  304 (530)
                      |++++..... .......+++|.|+.++.+++..++..++++|++++..++.....+++.|+++.|+.+|.++++.++..
T Consensus       275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence            9999987632 233445789999999999999999999999999999998888888999999999999999999999999


Q ss_pred             HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCc
Q 009636          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAE  383 (530)
Q Consensus       305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~  383 (530)
                      |+|+|+|++.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+.+|.+.|
T Consensus       355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999 99999999999999997 68889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcC----C-CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          384 FDIKKEAAWAISNATSG----G-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       384 ~~v~~~a~~aL~nl~~~----~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                      ++++..++++|.|+...    + .......+.+.|+++.|..+..+++.++...|..+|.+.+..
T Consensus       434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~  498 (529)
T 3tpo_A          434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV  498 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            99999999999999742    2 233445566889999999999999999999999988877643

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=9.6e-39  Score=322.52  Aligned_cols=365  Identities=19%  Similarity=0.209  Sum_probs=310.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      .+|.|+.+|.+++ +.++..|+++|.+++.+++..+..+++.|++|.|+++|+++++.++..|+|+|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4899999999998 899999999999999877888888999999999999999999999999999999999988889999


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--------C--------CChhHH
Q 009636          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL  260 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~  260 (530)
                      +.+.|++++|+++|..+.+.++++.++|+|+||+........... |++|.|+.++.        +        .+..+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995478899999999999999998443333444 99999999993        2        356777


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CCchhHHHHHHHHhHhhcC------------------
Q 009636          261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG------------------  315 (530)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~~------------------  315 (530)
                      ..++|+|+|++.. ++....+.+. |+++.|+.+|.+      .+..+...++.+|.|++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 6677878887 999999999985      4567888899999988631                  


Q ss_pred             --------------------------------CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 009636          316 --------------------------------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--  361 (530)
Q Consensus       316 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  361 (530)
                                                      .+...+.+++.++++.|+.+|.++.++.+++.|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1223445667788999999998775789999999999999986533  


Q ss_pred             -HH-HHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh------HHHHH
Q 009636          362 -QI-QAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP------RIVTV  432 (530)
Q Consensus       362 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~------~~~~~  432 (530)
                       .+ +..+ +.|++|.|+++|.+++.+++++|+|+|.|++.+   .....++..|+++.|+++|...++      +++..
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             23 4445 589999999999999999999999999999984   244566777899999999997653      68889


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCC
Q 009636          433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~~~~~  498 (530)
                      ++++|.+++...+.           ....+.++||++.|..|+.+. ++++++.|..+|.+||...+
T Consensus       397 ~l~~l~ni~~~~~~-----------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCHH-----------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99999999865433           578889999999999999999 99999999999999997543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=9.5e-39  Score=327.59  Aligned_cols=367  Identities=25%  Similarity=0.373  Sum_probs=326.3

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.+|.|+++|++ +++.+|..|+++|.++++++ .+..+.+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++.
T Consensus       100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            689999999985 56899999999999999875 566778899999999999999988 999999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009636          152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L  226 (530)
                      +..+.+.|+++.|+.++..++     ..+...++|+|++++.+...........++++.|+.++ .+.+.+++..++|+|
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL  256 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  256 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence            999999999999999998743     35678899999999987655555555667899999999 788999999999999


Q ss_pred             hhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009636          227 SNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       227 ~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a  305 (530)
                      ++|+..... .......+++|.|+.++.+.+..++..+++++++++..++.....+++.|+++.|+.+|.+++..++..|
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A  336 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  336 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence            999987532 2234457899999999999999999999999999999998888889999999999999999999999999


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      +|+|+|++.++..+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++.+++..+++.|+++.|+.+|.+.|+
T Consensus       337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~  415 (510)
T 3ul1_B          337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  415 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence            9999999999999999999999999999999999 99999999999999998 688899999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcC-----CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          385 DIKKEAAWAISNATSG-----GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                      +++..++++|.|+...     ........+.+.|+++.|..+..+++.++...|..+|.+.+..
T Consensus       416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            9999999999999752     1233445566789999999999999999999999988877743

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=7.6e-37  Score=316.86  Aligned_cols=402  Identities=18%  Similarity=0.199  Sum_probs=341.4

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.+++.+.++++.++..|+++|.+++... ......+.+.|++|.|++++.+++ +.++..++.+|.+++.++++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            68999999999999999999999999998764 455667778999999999999987 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+.+.|+++.|+.++.+. ....+..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            9999999999999999764 456777889999999864 45788889999999999999 66689999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV  309 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L  309 (530)
                      ..+..  ....+++|.|+.++.+.+++++..++|+|++++..+++....+.+.|+++.|+.++.+  .++.++..|+++|
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            86432  2346899999999999999999999999999999888788889999999999999976  3478999999999


Q ss_pred             hHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009636          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (530)
Q Consensus       310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  386 (530)
                      +|++.+++.   ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.++. ....+.+.|+++.|+.++.++++++
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v  413 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHH
Confidence            999886543   345778899999999999988346999999999999998654 4478889999999999999888999


Q ss_pred             HHHHHHHHHH--hhcCC------------------CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636          387 KKEAAWAISN--ATSGG------------------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       387 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      |++|+|++.|  +..++                  .++....+.+.|+++.|+.++.++++.++..+.++|.++....  
T Consensus       414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~--  491 (529)
T 1jdh_A          414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--  491 (529)
T ss_dssp             C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--
T ss_pred             HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--
Confidence            9988888777  32222                  3455567889999999999999999999999999999986431  


Q ss_pred             hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       447 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                                .+...+.+.||++.|..++++++++|+..|..++.++
T Consensus       492 ----------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          492 ----------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             ----------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                      2578889999999999999999999999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=319.97  Aligned_cols=405  Identities=19%  Similarity=0.221  Sum_probs=346.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.|++.|.++++.++..|+++|.++++.. ......+++.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            68899999999999999999999999998874 456667778999999999999987 8889889999999998889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+.+.|+++.|+.++.+. ...++..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999874 467888999999999864 45788999999999999999 66789999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV  309 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L  309 (530)
                      ..+..  ....+++|.|+.++.+.+++++..++|+|++++..+......+.+.|+++.|+.++.+.  .+.++..|+++|
T Consensus       254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            76332  33468999999999999999999999999999998888888899999999999999863  378999999999


Q ss_pred             hHhhcCCch--h-hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009636          310 GNIVTGDDM--Q-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (530)
Q Consensus       310 ~nl~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  386 (530)
                      +||+...+.  . ...+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+... ...+++.|+++.|++++.+.+.++
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v  410 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT  410 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence            999975442  2 334778899999999999873479999999999999987544 478889999999999998865555


Q ss_pred             HHH----------------------HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          387 KKE----------------------AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       387 ~~~----------------------a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      |++                      ++.+|.+++.  +......+.+.|+++.|+.+|.+.++.++..++++|.++....
T Consensus       411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~  488 (644)
T 2z6h_A          411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  488 (644)
T ss_dssp             TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH
T ss_pred             hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH
Confidence            554                      5555555554  3355567779999999999999999999999999999987432


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHH------------------HHH--HHHHHHHhCCCCC
Q 009636          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI------------------YEK--SVKLLETYWLDDE  498 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v------------------~~~--a~~il~~~~~~~~  498 (530)
                                  .++..+.+.|+++.|..++.+++++|                  |..  +..+++.||..+.
T Consensus       489 ------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~  550 (644)
T 2z6h_A          489 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  550 (644)
T ss_dssp             ------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred             ------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence                        14788999999999999999999999                  444  6778899997653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.6e-37  Score=324.63  Aligned_cols=403  Identities=15%  Similarity=0.137  Sum_probs=332.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHH---cCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCC
Q 009636           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIR---SGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~---~g~v~~Lv~ll~~~--~~~~i~~~a~~~L~~l~~~~  148 (530)
                      ++.|+..++++++.++..|+..|+++.+... .+....+-+   ..+++.|+++|.++  + ++++..|+|+|.+++. .
T Consensus       332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~  409 (810)
T 3now_A          332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-D  409 (810)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-S
T ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-C
Confidence            4777777777777788888888888865321 111111111   23477899999887  5 8999999999999999 5


Q ss_pred             hhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-----------------------------hhh---h
Q 009636          149 SEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-----------------------------RCR---D  195 (530)
Q Consensus       149 ~~~~~~~~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-----------------------------~~~---~  195 (530)
                      ++.+..++ +.|++|.|+.++++.+..++..|+|+|+||+.+.+                             ..+   +
T Consensus       410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~  489 (810)
T 3now_A          410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT  489 (810)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence            66666666 57999999999999999999999999999997542                             112   5


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                      .+++.|+++.|+.++ .++++.+++.++|+|.||+...+........|++|.|+.++.+.++..+..++|+|++++...+
T Consensus       490 ~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~  568 (810)
T 3now_A          490 VLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN  568 (810)
T ss_dssp             HHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence            678899999999999 7889999999999999999765555556678999999999999999999999999999986433


Q ss_pred             HHHH--HHHHhCcHHHHHHhhCCCCc-hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          276 DKIQ--AVIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       276 ~~~~--~~~~~~~l~~L~~lL~~~~~-~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      ....  .....|+++.|+.+|.++.. ..+..|+++|+||+.+++...+.+++.|+++.|..++.++ ++.+++.|+|+|
T Consensus       569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L  647 (810)
T 3now_A          569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL  647 (810)
T ss_dssp             HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred             hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            2111  00123689999999987644 3456899999999999888888899999999999999998 999999999999


Q ss_pred             HHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHH
Q 009636          353 SNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIV  430 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~  430 (530)
                      +|++.++ +....+++ .|.++.|+.++.+.+..+|++|+|+|.|++.+ ++..++.+++ .|+++.|+.++.+++.+++
T Consensus       648 ~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq  725 (810)
T 3now_A          648 CNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQ  725 (810)
T ss_dssp             HHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred             HHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence            9999865 45555554 78999999999999999999999999999986 5678889998 8999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC---CCHHHHHHHHHHHHHhC
Q 009636          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH---DNAEIYEKSVKLLETYW  494 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~---~~~~v~~~a~~il~~~~  494 (530)
                      ..++++|.++...+..           ....+.+.|+++.|..|...   .+.++++.|...|+...
T Consensus       726 ~~A~~aL~NL~~~s~e-----------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          726 HRGIVIILNMINAGEE-----------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             HHHHHHHHHHHTTCHH-----------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHH-----------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence            9999999999975432           47788899999999999643   48999999999999864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.5e-37  Score=312.12  Aligned_cols=363  Identities=15%  Similarity=0.176  Sum_probs=303.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+|.++..|.++++++|..|+++|++++..+ .+....+++.|++|.|+++|.+++ +.++..|+|+|.||+.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            6799999999999999999999999997542 344558889999999999999887 99999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--------CC-------Cchh
Q 009636          154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKLS  217 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------~~-------~~~~  217 (530)
                      .+++.|++|.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++.        ..       .+..
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 78899999999999999988 568888888 99999999992        11       3567


Q ss_pred             HHHHHHHHhhhhccCCCCCChhhhh-chHHHHHHhhcC------CChhHHHHHHHHHHHhccCC----------------
Q 009636          218 MLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHS------NDDEVLTDACWALSYLSDGT----------------  274 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~~~~~~~~~-~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~----------------  274 (530)
                      +++.++|+|+|||............ |++|.|+.++.+      .+..+.+.+++++.+++...                
T Consensus       159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~  238 (457)
T 1xm9_A          159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence            8889999999999873222223333 999999999985      46678889999999886321                


Q ss_pred             ----------------------------------hHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchh
Q 009636          275 ----------------------------------NDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       275 ----------------------------------~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~~~~~  319 (530)
                                                        +...+.+++.|+++.++.+|.+. ++.+++.|+|+|+|++.++...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                              01122344567788899998764 6889999999999999877543


Q ss_pred             h----HHHh-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCc------hhHHH
Q 009636          320 T----QCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE------FDIKK  388 (530)
Q Consensus       320 ~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~  388 (530)
                      .    +.++ +.|++|.|+.+|.++ +..++++|+|+|+|++.+.  ....++..|+++.|+++|..++      .++..
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            2    3334 689999999999999 9999999999999998853  4556777789999999998874      36888


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhh
Q 009636          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~  444 (530)
                      .++++|.|+..+ ++++...+.+.|+++.|+.++.++ ++++...|.++|.+++...
T Consensus       396 ~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            999999999886 457888888999999999999999 8999999999999887543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.2e-35  Score=307.46  Aligned_cols=368  Identities=24%  Similarity=0.335  Sum_probs=326.9

Q ss_pred             CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.+|.|++.|.++ ++.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            6899999999987 8999999999999998763 345667788999999999999887 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+...|+++.|+.++.+.++.++..|+|+|++|+.+...........++++.|+.++ .+.+..++..++|+|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999998999999999999999977622334556678999999999 77789999999999999998


Q ss_pred             CCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636          232 GKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       232 ~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~  310 (530)
                      ..+. .......+++|.|+.++.+.++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7532 222334589999999999999999999999999999988888888889999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR--EQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      +++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ .+  +....+++.|+++.|+.++.+.++.++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  445 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  445 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99998888888888999999999999988 999999999999999984 55  788889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ..|+++|.+++..+..          ..+..+.+.|+++.|..++.++++.++..+..+|.+++...
T Consensus       446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            9999999999875321          24567788899999999999999999999999999888543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=6.2e-36  Score=303.52  Aligned_cols=366  Identities=25%  Similarity=0.319  Sum_probs=324.0

Q ss_pred             CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.+++.|.++ ++.++..|+++|.+++... .+....+++.|++|.|+++|.+++ +.++..|+++|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            4689999999988 8999999999999998763 345667778999999999999987 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      +..+++.|+++.|+.++.+ .+..++..++|+|++++.+. +..+..+ ..++++.|+.++ .+.+..++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999986 78999999999999999765 4333333 378999999999 678899999999999999


Q ss_pred             ccCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636          230 CRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       230 ~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~  308 (530)
                      +...+ ........+++|.|+.++.+.++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            98752 22233446899999999999999999999999999999888777778888999999999999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      |++++.+++...+.+++.|+++.|+.+|.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888899999999999988 999999999999999985 78888889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                      ..|+++|.+++..+..          ..+..+.+.|+++.|..++.++++.++..++.+|.+++..
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            9999999999875322          2456777889999999999988999999999999998854

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=9.2e-36  Score=308.29  Aligned_cols=367  Identities=24%  Similarity=0.326  Sum_probs=327.4

Q ss_pred             CCHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.+|.|++.|.+++ +.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            68999999999887 999999999999998763 456677888999999999999987 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636          152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      +..+...|+++.|+.++ .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.+..++..++|+|++++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 5678999999999999999876533 3445678999999999 7889999999999999999


Q ss_pred             cCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHH
Q 009636          231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT  308 (530)
Q Consensus       231 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~  308 (530)
                      ...+.. ......++++.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            775322 2334568999999999999999999999999999998888888899999999999999998 99999999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      |+|++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.++...+++++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~  431 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV  431 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence            9999998888888889999999999999998 999999999999999985 78999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ..++++|.+++..+..          .....+.+.|+++.|..+..+.++++...+..++.+++...
T Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            9999999999874322          35667778899999999999999999999999998877543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=8.3e-36  Score=301.91  Aligned_cols=365  Identities=18%  Similarity=0.194  Sum_probs=303.6

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Chhh
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~-~~~~  151 (530)
                      ..++.++++|.++++++|..|+++|.+++... .+....+++.|+||.|+++|.+++ +.++..|+|+|.||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            48999999999999999999999999998654 567778889999999999999988 99999999999999985 6899


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-----------------CC
Q 009636          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ  213 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-----------------~~  213 (530)
                      +..+++.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.. +++++|++++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999987 6788999999999999975 457777775 57999999762                 23


Q ss_pred             CchhHHHHHHHHhhhhccCCCC-CChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccCChHH--------
Q 009636          214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDGTNDK--------  277 (530)
Q Consensus       214 ~~~~~~~~a~~~L~~L~~~~~~-~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~~~~--------  277 (530)
                      .+..++.+++|+|.||+...+. ..... ..|+++.|+.++.+      .+...+++++|+|.||+......        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3679999999999999987633 22222 36778899999874      46789999999999998652111        


Q ss_pred             -----------------HHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchh----hHHHhhcCchHHHHHh
Q 009636          278 -----------------IQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQ----TQCVIEYQALPCLLNL  335 (530)
Q Consensus       278 -----------------~~~~~~~~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~~~~~~----~~~~~~~~~l~~L~~l  335 (530)
                                       +..+.+.++++.++.+|. +.++.+++.|+++|.||+.+....    ...+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             112233356778889995 467899999999999999876322    2234467899999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--------chhHHHHHHHHHHHhhcCCCHHHHH
Q 009636          336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--------EFDIKKEAAWAISNATSGGTHEQIK  407 (530)
Q Consensus       336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~  407 (530)
                      |.++ +..+++.|+|+|+||+.+..  .+.++..|+++.|+.+|.++        +.++...|+++|.|++.. ++++.+
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9999 99999999999999998643  23455789999999999876        357899999999999876 679999


Q ss_pred             HHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHHhhh
Q 009636          408 FLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       408 ~l~~~~~i~~L~~lL~~~--~~~~~~~al~~l~~ll~~~~  445 (530)
                      .+.+.|+++.|+.++.+.  .+.++..|.++|+++..+.+
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            999999999999999986  88999999999999986543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1e-33  Score=303.75  Aligned_cols=405  Identities=19%  Similarity=0.212  Sum_probs=340.6

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            68899999999999999999999999998774 455666678999999999999877 8999999999999998889999


Q ss_pred             HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          153 KVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+.+.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+...|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999998754 556778899999999754 4788888999999999999 66788999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-C-chhHHHHHHHH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-S-PSVLIPALRTV  309 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~-~~~~~~al~~L  309 (530)
                      ..+.  .....++++.|+.++.+.++.++..++|+|++++.........+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7633  223468999999999999999999999999999998888888899999999999999863 3 38999999999


Q ss_pred             hHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchh-
Q 009636          310 GNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD-  385 (530)
Q Consensus       310 ~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~-  385 (530)
                      +||+......   ...+...++++.|+.+|.++..+.+++.|+|+|+|++.++ .....+.+.|+++.|++++.+++++ 
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~  546 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT  546 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence            9998755432   3467788999999999998834599999999999999864 4447888999999999999876544 


Q ss_pred             ---------------------HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          386 ---------------------IKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       386 ---------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                                           ++..++.+|.+++.  +++....+.+.|+++.|+.+|.++++.++..++.+|.++....
T Consensus       547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~  624 (780)
T 2z6g_A          547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  624 (780)
T ss_dssp             HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH
T ss_pred             HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence                                 45556667777765  4566667889999999999999999999999999999997432


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHH--------------------HHHHHHHhCCCCC
Q 009636          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK--------------------SVKLLETYWLDDE  498 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~--------------------a~~il~~~~~~~~  498 (530)
                                  .++..|.+.|+++.|..|+.+++++|+..                    +..++..||..++
T Consensus       625 ------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~  686 (780)
T 2z6g_A          625 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  686 (780)
T ss_dssp             ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----
T ss_pred             ------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCC
Confidence                        25788999999999999999999999554                    5567777776543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.4e-34  Score=292.97  Aligned_cols=366  Identities=18%  Similarity=0.205  Sum_probs=303.3

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-Cch
Q 009636          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPR  192 (530)
Q Consensus       114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~  192 (530)
                      ..+.+|.|+.+|.+++ +.++..|+++|.+++..+.+++..+++.|+||.|+++|.+++..+++.|+|+|.||+.. ++.
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            3578999999999988 99999999999999998999999999999999999999999999999999999999985 678


Q ss_pred             hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc------------------C
Q 009636          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------------------S  254 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~------------------~  254 (530)
                      .+..+.+.|++++|+.+|....+.++++.++++|++|+..... ......+++|.|+.++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~-k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI-KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG-HHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999996556889999999999999986433 33334678999998761                  2


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCC------CCchhHHHHHHHHhHhhcCCc----------
Q 009636          255 NDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDD----------  317 (530)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~~~~----------  317 (530)
                      .++.++.++.++|.||+..+++..+.+.+ .|+++.|+.++.+      .+...++.|+++|.||+....          
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            36799999999999999988776666776 4667899999864      466789999999999986521          


Q ss_pred             ---------------hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHH-HHhCcHHHHHHH
Q 009636          318 ---------------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR---EQIQAV-IEANIIGPLVAL  378 (530)
Q Consensus       318 ---------------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l-~~~~~i~~L~~l  378 (530)
                                     ...+.+.+.++++.|+.+|....++.+++.|+|+|.|++.+..   ...+.. .+.++++.|+++
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                           1112223446678889999654488999999999999998652   223333 357889999999


Q ss_pred             HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--------ChHHHHHHHHHHHHHHHhhhhhhhc
Q 009636          379 LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--------DPRIVTVCLEGLENILKVGEAEKNL  450 (530)
Q Consensus       379 l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--------~~~~~~~al~~l~~ll~~~~~~~~~  450 (530)
                      |.+++..+++.|+|+|.||+.+..  . +.++..|+++.|+.+|...        ..+++..++++|.+++...+.    
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~--~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~----  436 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDAR--N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE----  436 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCS--C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChh--H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence            999999999999999999998653  2 2345789999999999876        357888999999999866543    


Q ss_pred             CCCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHHHHHHHHHhCC
Q 009636          451 GNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYWL  495 (530)
Q Consensus       451 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~il~~~~~  495 (530)
                             ....+.+.|++..|..|..+.  .+.+.+.|..++..+|.
T Consensus       437 -------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          437 -------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             -------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence                   266777899999999998765  89999999999998774

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=287.36  Aligned_cols=327  Identities=17%  Similarity=0.169  Sum_probs=277.0

Q ss_pred             hcCCHHHHHHhhcCC------------ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCH----------HHHHHhhcCC
Q 009636           71 KLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLRE  128 (530)
Q Consensus        71 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v----------~~Lv~ll~~~  128 (530)
                      +-+.+|.|+++|+..            +++++++|+++|.+++++. .+..+...+.|++          +.+++++.+.
T Consensus        68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            448999999999963            3699999999999999986 5566666677777          7777888765


Q ss_pred             C-CHH-----HHH-------HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 009636          129 D-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALG  184 (530)
Q Consensus       129 ~-~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~  184 (530)
                      . ..+     ++.       +|+|+|.|++. ++++++.+++.|+++.|+.+|..           .++.++..|+|+|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~  225 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT  225 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence            2 112     433       89999999977 69999999999999999999941           34678999999999


Q ss_pred             hhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhh-cCCChhHH
Q 009636          185 NIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEVL  260 (530)
Q Consensus       185 nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~  260 (530)
                      ||+.+.+..+..+. ..|++++|+.+| .+.+.+++..++|+|.||+...  .........|++|.|+.+| .+.+..++
T Consensus       226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            99988876666665 456699999999 6889999999999999999852  2333445579999999975 55688999


Q ss_pred             HHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHH
Q 009636          261 TDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL  332 (530)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~~~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L  332 (530)
                      ..++.+|++|+...++....+. ..|+++.|+.+|.+.+.    .++..|+++|.|++.   +++...+.+++.|+++.|
T Consensus       305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L  384 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL  384 (458)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence            9999999999985544444455 78999999999998764    489999999999997   788888899999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      +.+|.++ +..++++|+|+|+|++.+++++...+++.|+++.|+.++.+++.++++.|+++|.||+.+.
T Consensus       385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999998 8999999999999999889999999999999999999999999999999999999999864

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.5e-33  Score=292.07  Aligned_cols=402  Identities=17%  Similarity=0.145  Sum_probs=337.2

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.+++.|.+ ++++++..|+..|+++...  ......+.+.|++|.|+++|.+++ +.++..|+++|.+++..++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            468999999975 4899999999999998654  456778889999999999999988 999999999999999977778


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+.+.|+++.|+.++.++++.++..++.+|.+++..++..+..+...|+++.|+.++....+......++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999998888899999999999999999766677788889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      ...........++++.|+.++.+.++.++..++|++.+++.......   ...++++.|+.++.+.++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            65444445557899999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcCc-hhH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI  386 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v  386 (530)
                      ++.+++.....+.+.|+++.|+.++.+.. ++.++..|+++|+|++.+++.   ....+.+.|+++.|+.++.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            99988878888999999999999997631 478999999999999886433   4567888999999999999876 599


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH----------------------HHHhh
Q 009636          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN----------------------ILKVG  444 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~----------------------ll~~~  444 (530)
                      +..++|+|.|++.+.  +....+.+.|+++.|+.++...+++++..+.|++.+                      +....
T Consensus       373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~  450 (529)
T 1jdh_A          373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence            999999999999853  445788899999999999987777776655555544                      33221


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                                  ..+..+.+.|+++.|..+..+++++++..|...+.++.
T Consensus       451 ------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~  488 (529)
T 1jdh_A          451 ------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             ------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence                        12566788999999999999999999999999988865

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=287.88  Aligned_cols=403  Identities=17%  Similarity=0.163  Sum_probs=341.5

Q ss_pred             CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.+++.|.++ +++++..|+.+|+++...  ......+.+.|+++.|+++|.+++ +.++..|+++|.+++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            4689999999865 899999999999987654  346778888999999999999988 999999999999999977778


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+++.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+|+.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999898898889999999987788899999999999999999666667888999999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.++.+.++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6554455556789999999999999999999999999998754321   1112789999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCH--HHHH-HHHHhCcHHHHHHHHhcCc-hhH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNR--EQIQ-AVIEANIIGPLVALLENAE-FDI  386 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~-~~v  386 (530)
                      ++.+++.....+.+.|+++.|+.++.+.. .+.++..|+++|+|++..++  +..+ .+++.|+++.|+++|.+.+ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            99988888888899999999999998742 37999999999999997533  2333 4778899999999998874 799


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 009636          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKVG  444 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~----------------------~~~~~~al~~l~~ll~~~  444 (530)
                      ++.|+|+|.|++.+.  +....+.+.|+++.|+.+|...+                      .+++..++.+|.++....
T Consensus       370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999999853  34478889999999999987633                      446667777777777543


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .            .+..+.+.|+++.|..+..+.++++...|...+.++..
T Consensus       448 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          448 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             H------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             H------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            2            25667789999999999999999999999988777643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=5.4e-32  Score=290.42  Aligned_cols=402  Identities=17%  Similarity=0.166  Sum_probs=339.1

Q ss_pred             CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.|++.|.++ +++++..|+.+|+++...  ......+.+.|+++.|+.+|.+++ +.++..|+++|.+++...+..
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            4688999999854 899999999999997654  345677888999999999999988 999999999999999977888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+.+.|+++.|+.++.+++..++..++.+|.+++..++..+..+...|+++.|+.++...........++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988888888889999999999999655566777789999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      ...........++++.|+.++.+.+..++..++|++.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6544444556789999999999999999999999999998765321   1123688999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcCc-hhH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI  386 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v  386 (530)
                      |+.+++.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++   ....+...++++.|+.++.+++ +.+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999888888888999999999999986323 48999999999999875433   2346778899999999999886 499


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 009636          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKVG  444 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~----------------------~~~~~~al~~l~~ll~~~  444 (530)
                      ++.|+|+|+|++.+  +.....+.+.|+++.|+.+|...+                      .+++..++.+|.++....
T Consensus       506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~  583 (780)
T 2z6g_A          506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI  583 (780)
T ss_dssp             HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence            99999999999984  455578889999999999986543                      346667777888776322


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      .            .+..+.+.|++..|..+..+++++|...|...+.++.
T Consensus       584 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          584 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             H------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             h------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            1            3566888999999999999999999999988877653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=5.1e-30  Score=247.10  Aligned_cols=273  Identities=19%  Similarity=0.173  Sum_probs=237.5

Q ss_pred             CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC----------CCchhHHHHHHHHhhhhccCCCCCCh-h
Q 009636          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPF-D  239 (530)
Q Consensus       171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~-~  239 (530)
                      +......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|..          ..++.+++.|+|+|.||+.+.+.... .
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3445667899999999988 5799999999999999999941          13578999999999999988642222 2


Q ss_pred             -hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCC
Q 009636          240 -QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       240 -~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~  316 (530)
                       ...|++|.|+.+|.+++++++..++|+|.+++.. ++.....+.+.|+++.|+.+| .+.++.++..|+.+|+||+..+
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence             2457799999999999999999999999999985 556777888999999999974 6678899999999999999866


Q ss_pred             chhhHHHh-hcCchHHHHHhhcCCCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636          317 DMQTQCVI-EYQALPCLLNLLSGNYKK----SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       317 ~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      +.....+. ..|+++.|+.+|.++ ++    .+++.|+|+|.|++.   ++++.++.+.+.|+++.|+.+|.+++..+++
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence            55555555 789999999999876 43    599999999999997   7889999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      +|+|+|.|++.+ ++++...+.+.|+++.|+++|.+++++++..++++|.+|+...+.
T Consensus       282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999875 678899999999999999999999999999999999999987554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.5e-30  Score=249.28  Aligned_cols=269  Identities=19%  Similarity=0.178  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHhhhCCCchhhhhHh-h
Q 009636          132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVL-S  199 (530)
Q Consensus       132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~-~  199 (530)
                      ..+..|+|+|.|++. ++++++.+++.|+++.|+.+|..           .++.++..|+|+|.||+.+.+..+..+. .
T Consensus        47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            456689999999999 58999999999999999999942           2467999999999999988876777765 4


Q ss_pred             cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChH
Q 009636          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                      .|++++|+.+| .+.+.+++..++|+|.||+...  .........|++|.|+.+| .+.+++++..++++|++++...++
T Consensus       126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence            56699999999 7889999999999999999862  2334445679999999975 567899999999999999986655


Q ss_pred             HHHHHH-HhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH
Q 009636          277 KIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (530)
Q Consensus       277 ~~~~~~-~~~~l~~L~~lL~~~~~----~~~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  348 (530)
                      ....+. ..|+++.|+.+|.+.++    .++..|+++|.|++.   +++..++.+.+.|+++.|+.+|.++ +..++++|
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A  283 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA  283 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence            545555 78999999999988654    489999999999997   6888888899999999999999998 89999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009636          349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  403 (530)
Q Consensus       349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~  403 (530)
                      +|+|+|++.+++++.+.+++.|+++.|++++.+++.++++.|+++|.|++.+...
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            9999999988999999999999999999999999999999999999999997543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=8.3e-27  Score=216.92  Aligned_cols=240  Identities=28%  Similarity=0.422  Sum_probs=222.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (530)
                      |.+|.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.++.++++.++..++++|++++.+.+..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999988 99999999999999998888999999999999999999999999999999999999999888999


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .+.+.|+++.++.++ .+.+..++..++|+|.+++... .........++++.|+.++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6788999999999999999654 33334455789999999999999999999999999999988


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88878899999999999999999999999999999999998888888899999999999999998 99999999999999


Q ss_pred             HhcC
Q 009636          355 ITAG  358 (530)
Q Consensus       355 l~~~  358 (530)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=1.7e-26  Score=214.79  Aligned_cols=241  Identities=27%  Similarity=0.415  Sum_probs=223.5

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009636          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (530)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~  237 (530)
                      |.++.|+.+|.+++++++..|+++|.+++...+..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++... ....
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            5689999999999999999999999999998887889999999999999999 7778999999999999999874 3344


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~  317 (530)
                      .....++++.|+.++.+++++++..++++|++++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+.+
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            45567899999999999999999999999999998888888889999999999999999999999999999999999888


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      .....+++.|+++.|+.++.++ ++.++..|+|+|++++.+++.....+.+.|+++.|++++.+++++++..|+++|.|+
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI  239 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            8878889999999999999988 999999999999999998899999999999999999999999999999999999999


Q ss_pred             hcCC
Q 009636          398 TSGG  401 (530)
Q Consensus       398 ~~~~  401 (530)
                      ....
T Consensus       240 ~~~~  243 (252)
T 4hxt_A          240 KSGG  243 (252)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            8754

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=1.4e-26  Score=217.22  Aligned_cols=234  Identities=16%  Similarity=0.160  Sum_probs=200.5

Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh
Q 009636          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL  336 (530)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL  336 (530)
                      +-+..++..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.+|
T Consensus        55 e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           55 QEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            456778889999887654 5566888999999999 99999999999999999999999998888999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 009636          337 SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK  416 (530)
Q Consensus       337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~  416 (530)
                      .++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.+ +++.+..+++.|+++
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHH
Confidence            8643789999999999999999999888999999999999999999999999999999999987 668889999999999


Q ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCC
Q 009636          417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWL  495 (530)
Q Consensus       417 ~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~~  495 (530)
                      .|+.+|.+++++++..++.+|.+++...+..........+.+..++++     .++.++.++ +.++|++|..|+++||.
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999987554221111112335666664     477788776 89999999999999997


Q ss_pred             CCC
Q 009636          496 DDE  498 (530)
Q Consensus       496 ~~~  498 (530)
                      +.+
T Consensus       288 ~~~  290 (296)
T 1xqr_A          288 SPA  290 (296)
T ss_dssp             ---
T ss_pred             CCC
Confidence            644

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=7.3e-27  Score=217.35  Aligned_cols=239  Identities=36%  Similarity=0.551  Sum_probs=220.2

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (530)
                      ...+.++.+|.+++ ++++..|+++|.++...+.+.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45889999999998 89999999999887776778888899999999999999999999999999999999998888999


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .+.+.|+++.|+.++ .+.+..++..++|+|.+|+...+.. ......+++|.|+.++.++++.++..++|+|++++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999886544 45566889999999999999999999999999999988


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999988888888899999999999999998 99999999999999


Q ss_pred             Hhc
Q 009636          355 ITA  357 (530)
Q Consensus       355 l~~  357 (530)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.3e-26  Score=214.03  Aligned_cols=239  Identities=35%  Similarity=0.567  Sum_probs=217.6

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.++..|++++++++..|+++|+++++.. .+....+++.|++|.|+++|.+++ +.++..|+++|.+++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            46899999999999999999999999988863 667788899999999999999988 9999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+++.|+++.|+.++.++++.++..|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|.+|+..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988775447889999999999999 677899999999999999987


Q ss_pred             CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      .+. .......+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            532 2233458899999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             hhc
Q 009636          312 IVT  314 (530)
Q Consensus       312 l~~  314 (530)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.9e-24  Score=218.55  Aligned_cols=322  Identities=10%  Similarity=0.112  Sum_probs=256.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--  150 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~--  150 (530)
                      ..+.+.+.|.+++.+.+..|++.|..+...  ......+. +.|+++.|++++++..+..+.+.++.+|.|++...+.  
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence            457777788887777799999999988543  33444454 4677999999999633378999999999999984331  


Q ss_pred             ------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636          151 ------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       151 ------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (530)
                                                          .+..+.+.|+++.|+.++++.++.+++.++|+|.||+.+ +..|
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R  491 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI  491 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence                                                345667899999999999999999999999999999977 5689


Q ss_pred             hhHhhcCChHHHHHhhcCCCch--hHHHHHHHHhhhhccCCC-CCCh--hhhhchHHHHHHhhcC-CCh-----------
Q 009636          195 DLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGKP-QPPF--DQVSPALPALAHLIHS-NDD-----------  257 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~--~~~~~a~~~L~~L~~~~~-~~~~--~~~~~~l~~L~~ll~~-~d~-----------  257 (530)
                      ..+.+.|++++|+.++......  ..+..|+++|.+++.... ...+  ....+++|.|+.+|.. ++.           
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9999999999999999544332  378999999999985432 1111  0113899999999983 211           


Q ss_pred             --hHHHHHHHHHHHhccCC----hHHHHHHHHh-CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC---
Q 009636          258 --EVLTDACWALSYLSDGT----NDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---  327 (530)
Q Consensus       258 --~v~~~a~~~l~~l~~~~----~~~~~~~~~~-~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~---  327 (530)
                        --...++.+|.|++..+    ++..+.++.. |+++.|..+|.+++..++..|+++++|++...+...+.+.+.+   
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              12678999999999886    2334557774 8999999999999999999999999999984443222343222   


Q ss_pred             ---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHHHHHHHhc--CchhHHHHHHHHHHHhhc
Q 009636          328 ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGPLVALLEN--AEFDIKKEAAWAISNATS  399 (530)
Q Consensus       328 ---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~  399 (530)
                         -++.|+.++..+ +.++|+.|+|+|+|++.+++...+.+++. ++++.++.++.+  ++.+++..++.++.|++.
T Consensus       652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence               378899999988 99999999999999988888888888876 799999999999  899999999999999996

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.4e-22  Score=207.94  Aligned_cols=399  Identities=14%  Similarity=0.108  Sum_probs=298.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      ..+.+.+.+.+........++..+.+.++.  ....+..+..+.++.|.+.+++   ..++..|+-+|+.+.........
T Consensus       256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~  330 (778)
T 3opb_A          256 LSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCI  330 (778)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTC
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcC
Confidence            356666666554444444555555556666  4555666677778999999864   47889999999998874322111


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      .+.  ...+.+.+++.+++..-+..|++.|+.++.+.. .|..+. +.+++..|+.++....+..+...++.+|.|++..
T Consensus       331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~  407 (778)
T 3opb_A          331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL  407 (778)
T ss_dssp             CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred             cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence            111  245777888877766679999999999987665 555554 5567999999995457888999999999999987


Q ss_pred             CCCCC---------------------------------------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009636          233 KPQPP---------------------------------------FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       233 ~~~~~---------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (530)
                      .+...                                       .....|++|.|+.++.+.++.++..++|+|.+++..
T Consensus       408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d  487 (778)
T 3opb_A          408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS  487 (778)
T ss_dssp             CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred             CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            64210                                       012268899999999999999999999999999866


Q ss_pred             ChHHHHHHHHhCcHHHHHHhhCCCCch---hHHHHHHHHhHhhcCCchhhHHHhh----cCchHHHHHhhcC-CCch---
Q 009636          274 TNDKIQAVIEAGVFPRLAEFLMHPSPS---VLIPALRTVGNIVTGDDMQTQCVIE----YQALPCLLNLLSG-NYKK---  342 (530)
Q Consensus       274 ~~~~~~~~~~~~~l~~L~~lL~~~~~~---~~~~al~~L~nl~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~---  342 (530)
                       .+....+++.|+++.|+.++.+....   .+..|+.+|++++...+...  ++.    .|+++.|+.+|.. +...   
T Consensus       488 -~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~  564 (778)
T 3opb_A          488 -KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNP  564 (778)
T ss_dssp             -GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred             -HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccccc
Confidence             45667788999999999999887644   79999999999985443221  121    3899999999983 2111   


Q ss_pred             ---------hHHHHHHHHHHHHhcCC----HHHHHHHHHh-CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-H
Q 009636          343 ---------SIKKEACWTVSNITAGN----REQIQAVIEA-NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI-K  407 (530)
Q Consensus       343 ---------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~  407 (530)
                               .-+.+|+.+|.|++..+    .+..+.++.. |+++.|..++.+++..+|+.|+++++|++..  ++.+ .
T Consensus       565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~  642 (778)
T 3opb_A          565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAA  642 (778)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGG
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHH
Confidence                     12779999999999975    3446777884 9999999999999999999999999999984  3432 2


Q ss_pred             HHHHc------CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC--CC
Q 009636          408 FLVIQ------GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH--DN  479 (530)
Q Consensus       408 ~l~~~------~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~--~~  479 (530)
                      .+...      +.++.|+.+++.+|.+++..|.++|.++....+..          ...+++..+|++.+..+...  ++
T Consensus       643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i----------a~~ll~~~~gi~~Ll~lL~~~~~~  712 (778)
T 3opb_A          643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI----------AKELLTKKELIENAIQVFADQIDD  712 (778)
T ss_dssp             GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH----------HHHHTTCHHHHHHHHHHHHHTTTC
T ss_pred             HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH----------HHHHHHccccHHHHHHHHhccCCC
Confidence            33221      23789999999999999999999999986544432          24555556899998887666  99


Q ss_pred             HHHHHHHHHHHHHhCC
Q 009636          480 AEIYEKSVKLLETYWL  495 (530)
Q Consensus       480 ~~v~~~a~~il~~~~~  495 (530)
                      ++++.++..++...++
T Consensus       713 ~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          713 IELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999986

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=8.6e-23  Score=184.15  Aligned_cols=199  Identities=38%  Similarity=0.567  Sum_probs=185.9

Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009636          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (530)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~  320 (530)
                      ..+..+.|..++.+++++++..++|+|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++...
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            36678899999999999999999999999998888888889999999999999999999999999999999999888888


Q ss_pred             HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      ..+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++....+++.|+++.|++++.++++.++..|+++|.|++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            8899999999999999999 999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636          401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       401 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll  441 (530)
                       +++....+.+.|+++.|+.++.++++.++..++++|.++.
T Consensus       169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence             4678888899999999999999999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=2.2e-22  Score=181.45  Aligned_cols=199  Identities=34%  Similarity=0.533  Sum_probs=181.5

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009636          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (530)
Q Consensus       114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~  193 (530)
                      ..+..+.|+.+|.+++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            3578999999999988 999999999999999888999999999999999999999999999999999999999888888


Q ss_pred             hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                      +..+.+.|+++.|+.++ .+.+..++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999 7788999999999999999865322 234457899999999999999999999999999999


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~  314 (530)
                      ..+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            878888889999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=1e-21  Score=184.08  Aligned_cols=226  Identities=13%  Similarity=0.091  Sum_probs=184.6

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009636          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l  209 (530)
                      .+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678889999999998 6678888899999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHhhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009636          210 LNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (530)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  288 (530)
                      +..+++..+++.|+|+|++++++.+. .......+++|.|+.++.+.+..++..++|+|++++..+++.+..+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            96556889999999999999998643 22344478999999999999999999999999999988888889999999999


Q ss_pred             HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh--cCchHH---HHHhhcCCC-chhHHHHHHHHHHHHhc
Q 009636          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPC---LLNLLSGNY-KKSIKKEACWTVSNITA  357 (530)
Q Consensus       289 ~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~---L~~lL~~~~-~~~v~~~a~~~L~nl~~  357 (530)
                      .|+.+|.+++..++..|+++|++|+.+.+......-.  ..+...   -.+-++... ..++.+.+..++.++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999875433222111  112122   223333221 24556666666666654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=168.43  Aligned_cols=197  Identities=19%  Similarity=0.154  Sum_probs=170.5

Q ss_pred             CHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636          117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (530)
                      .+|.++++|.+++ +  .++..|+++|.+++..+++.+..+++.|+||.|+++|+++++++++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999988 6  899999999999998889999999999999999999999999999999999999999888899


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc----------------CCChh
Q 009636          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE  258 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~  258 (530)
                      ..+.+.|++++|+++|..+.+.++++.++.+|++|+....... ....+.+|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            9999999999999999546789999999999999998754333 334567888887653                13678


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CCchhHHHHHHHHhHhhcC
Q 009636          259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~~  315 (530)
                      ++.++..+|.|++..+++..+.+.+. |+++.|+.+++.      .+.+.++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998877777777765 778999999875      2567899999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=6.1e-20  Score=164.36  Aligned_cols=197  Identities=16%  Similarity=0.183  Sum_probs=166.5

Q ss_pred             CCHHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636           73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      ..+|.++++|.++++  ++|..|+..++++.... .+....+++.|++|.|+++|.+++ +.+|..|+|+|.||+.++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            378999999999998  89999999999987653 556778889999999999999988 99999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---------------CCC
Q 009636          151 HTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------------GQP  214 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---------------~~~  214 (530)
                      ++..+.+.|+||.|+++|. +.+.++++.++.+|+||+.... .+..+.+ +++++|+.++.               ...
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence            9999999999999999997 5789999999999999987654 6667666 46999988762               113


Q ss_pred             chhHHHHHHHHhhhhccCC-CCCChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccC
Q 009636          215 KLSMLRNATWTLSNFCRGK-PQPPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       215 ~~~~~~~a~~~L~~L~~~~-~~~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~  273 (530)
                      +..++.++.++|.||+... ....... ..|+++.|+.+++.      .+...+++++.+|.||+..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6799999999999999865 3333333 35788999999874      2667899999999999865

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.78  E-value=2.8e-17  Score=172.04  Aligned_cols=344  Identities=11%  Similarity=0.122  Sum_probs=247.8

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CR  194 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~  194 (530)
                      .++|.+..++.+++ ..+|..++.+|+.++.....   ......+++.++.++.++++.++..|+++|+.++...+. .+
T Consensus       242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence            35666666666555 66777777777776652111   112235678888889888899999999999998854331 11


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .......+++.+..++ .+.+..++..++++|..++.....  ......++|.+..++.+.+++++..++.++..+....
T Consensus       318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence            1112234667777777 778899999999999999864221  1224567889999999889999999999888876532


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      ...   .....+++.+..++.+.++.++..++.+++.++......   .....+++.+..++.+. +..+|..|+.+++.
T Consensus       395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK  467 (588)
T ss_dssp             CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence            211   122357788889999999999999999999987522111   12234688899999888 89999999999999


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHH
Q 009636          355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCL  434 (530)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al  434 (530)
                      ++......   .....++|.|..++.+.++.+|..++++++.++.....+    .....+++.|..+++++++.++..++
T Consensus       468 l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~  540 (588)
T 1b3u_A          468 LVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVA  540 (588)
T ss_dssp             HHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHH
Confidence            98632111   123468888888888889999999999999998742221    13346889999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      +++..+.......          +.    ....+..|..+..+++++|+..|...+..+-
T Consensus       541 ~~l~~l~~~~~~~----------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          541 KSLQKIGPILDNS----------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHGGGSCHH----------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhchh----------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            9999998653211          11    1234567777889999999999999988653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.78  E-value=6.2e-18  Score=184.70  Aligned_cols=355  Identities=13%  Similarity=0.129  Sum_probs=260.1

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      -+.+++.+.++++.++..++.++..++.......+     .++++.|++.+.+++ +.++..++.+|+.++...+.....
T Consensus        92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~  165 (852)
T 4fdd_A           92 KSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS  165 (852)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence            45667778888899999999999999876422222     457999999999887 899999999999999743332211


Q ss_pred             HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636          155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       155 ~~----~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      -.    -..+++.+++.+.++++.++..|+++|++++...+..-... -..+++.++..+ .+.+..++..++++|..++
T Consensus       166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~  243 (852)
T 4fdd_A          166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLL  243 (852)
T ss_dssp             CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence            00    02356777888888899999999999999886544211110 113567777777 7788999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhh-----------CC
Q 009636          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE---AGVFPRLAEFL-----------MH  296 (530)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~  296 (530)
                      ...+..-.....++++.+..++.+.++.++..+++++..++.....  ...+.   ..+++.++..+           .+
T Consensus       244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d  321 (852)
T 4fdd_A          244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD  321 (852)
T ss_dssp             HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred             HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence            8754322233467888888999999999999999999999865421  11222   14456666666           23


Q ss_pred             -----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636          297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       297 -----------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                                 .++.++..|..+++.++...+..   ++ ..+++.+...+.++ ++.+|..|++++++++.+..+....
T Consensus       322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~  396 (852)
T 4fdd_A          322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP  396 (852)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence                       34568899999999998644322   11 24678888888888 8999999999999999987765543


Q ss_pred             HHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636          366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       366 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~  445 (530)
                      .+ .++++.++..+.+.++.||..|+|++++++........ .-.-.++++.|+..+.++++.++..++++|.+++....
T Consensus       397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC  474 (852)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred             HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            33 46889999999999999999999999999863211000 00112467888888888899999999999999987654


Q ss_pred             h
Q 009636          446 A  446 (530)
Q Consensus       446 ~  446 (530)
                      .
T Consensus       475 ~  475 (852)
T 4fdd_A          475 T  475 (852)
T ss_dssp             G
T ss_pred             H
Confidence            3

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.76  E-value=6.5e-17  Score=176.62  Aligned_cols=400  Identities=13%  Similarity=0.138  Sum_probs=264.1

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.+++.+.++++.++..|++++..++... ...... .-.++++.++.++.+++ +.++..|+++|..++...++...
T Consensus       175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~-~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~~~~~~  251 (852)
T 4fdd_A          175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISR-TQALML-HIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVRMDRLL  251 (852)
T ss_dssp             HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHT-SHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-cHHHHH-HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhCHHHHH
Confidence            4567777788889999999999999887542 111111 11346888888888887 99999999999999986554433


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhc----------CC--------
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLN----------GQ--------  213 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~----------~~--------  213 (530)
                      ..+. ++++.++..+.+.++.++..|++++..++.... .+..+..  ...++.++..+.          .+        
T Consensus       252 ~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d  329 (852)
T 4fdd_A          252 PHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD  329 (852)
T ss_dssp             GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred             HHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence            2222 467888888888899999999999999986542 3332211  124555555551          12        


Q ss_pred             ---CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009636          214 ---PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (530)
Q Consensus       214 ---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L  290 (530)
                         .+..++..+..+|..++...+   ......++|.+..++.+++..++..++++++.++....+...... .++++.+
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l  405 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHL  405 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHH
Confidence               223468888888888887543   234466888888899999999999999999999988765444333 3688999


Q ss_pred             HHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009636          291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN  370 (530)
Q Consensus       291 ~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (530)
                      +..+.++++.++..+++++++++...........-.++++.|+..+.+. ++.+|..|+|+|++++..........+ .+
T Consensus       406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~  483 (852)
T 4fdd_A          406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL-AY  483 (852)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH-HH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH-HH
Confidence            9999999999999999999999864321111112246788899999888 899999999999999863222211111 24


Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhh---------------------------------------------cCCCHHH
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNAT---------------------------------------------SGGTHEQ  405 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~---------------------------------------------~~~~~~~  405 (530)
                      +++.|+.++...+.+....+..++..++                                             ..-....
T Consensus       484 ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~  563 (852)
T 4fdd_A          484 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF  563 (852)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhH
Confidence            5566666665544444333444444333                                             1100001


Q ss_pred             HHHHHH--cCChHHHHh-------------ccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009636          406 IKFLVI--QGCIKPLCD-------------LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK  470 (530)
Q Consensus       406 ~~~l~~--~~~i~~L~~-------------lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  470 (530)
                      ..++-.  ..++..+..             ..+.++.+++..+++++..+.......          +...+...+.+..
T Consensus       564 ~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~----------~~~~~~~~~~~~~  633 (852)
T 4fdd_A          564 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN----------IEQLVARSNILTL  633 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG----------GHHHHHTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh----------HHHHhcCCcHHHH
Confidence            111000  001111111             112335667777888888877654321          3444545677888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          471 IESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       471 l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      +..+..+++++|++.|..++..+.
T Consensus       634 l~~~l~~~~~~vr~~a~~~l~~l~  657 (852)
T 4fdd_A          634 MYQCMQDKMPEVRQSSFALLGDLT  657 (852)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHH
Confidence            888888899999999988887653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.76  E-value=1.2e-16  Score=167.15  Aligned_cols=381  Identities=12%  Similarity=0.088  Sum_probs=285.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.+...+.++++.++..|+..+..++...  +.  ......++|.+..++++++ +.++..|+.+|+.++...+..  
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence            3566666777889999999999999887653  21  1223567899999998887 899999999999988643321  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                       .....+++.+..++.++++.+|..++.+|+.++.....   ......+++.++.++ .+.+..++..+++++..++...
T Consensus       238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence             12234688888999888999999999999999753211   112334678888888 7788999999999999999875


Q ss_pred             CCCCh--hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          234 PQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       234 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      +....  .....++|.+..++.+.++.++..++++++.++..-...   .....+++.+..++.+.++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~  389 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            43221  345778899999999999999999999999987432211   1223578889999999999999999999988


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      ++......   .....++|.+..++.+. +..+|..++.+++.++.. ..+    .....+++.+...+.+.+..||..|
T Consensus       390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a  461 (588)
T 1b3u_A          390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            87543211   12245788888888887 899999999999998752 111    1122467888888998899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009636          391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK  470 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  470 (530)
                      +.++..++....++.    ....+++.|..++.+++..++..+++++..+........         +.     ...+..
T Consensus       462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~---------~~-----~~~~~~  523 (588)
T 1b3u_A          462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---------TT-----KHMLPT  523 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHTHHH
T ss_pred             HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH---------HH-----HHHHHH
Confidence            999999987433332    234578888888888999999999999999986543210         12     234577


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          471 IESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       471 l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      |..+..+++++|+..+...+..++.
T Consensus       524 l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          524 VLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHhhCCCCCchHHHHHHHHHHHHHH
Confidence            7777888999999999988888764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.74  E-value=3.3e-16  Score=163.20  Aligned_cols=333  Identities=16%  Similarity=0.159  Sum_probs=225.2

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.+.+.+.++++.++..|++++.++..   .....     .++|.+.+++.+++ +.+|..|++++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            45566666777788888888777776631   12222     24677899999887 99999999999999986665432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                         +.++++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ .+.++..+..++.++..++...
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence               246789999999999999999999999999987764311111223466677777 4556777777888887776332


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~  310 (530)
                          ......+++.+..++++.++.|+..+++++.++...   +++..+.+. ..+.+.|+.++ ++++.++..|+.+++
T Consensus       234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNIN  307 (591)
T ss_dssp             ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHH
Confidence                233467888899999999999999999999998742   233334333 25567777665 478899999999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      .++...+.....     .+..+. .+.++ +..+|..|++++.+++...  ++.     .+++.|...+.+.+.+++..+
T Consensus       308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~  373 (591)
T 2vgl_B          308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA  373 (591)
T ss_dssp             HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence            998754432211     111111 11233 4677778888777776532  121     245566677777777788888


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636          391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~  445 (530)
                      ++++++++... +....     .+++.|++++......++..++.++..++...+
T Consensus       374 v~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p  422 (591)
T 2vgl_B          374 VRAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP  422 (591)
T ss_dssp             HHHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence            88888777653 22222     246677777776666666666666666665443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.73  E-value=1.1e-14  Score=145.71  Aligned_cols=416  Identities=13%  Similarity=0.138  Sum_probs=294.0

Q ss_pred             CCHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCCHHH
Q 009636           73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEVI-RSGVVPRFVEFLLREDYPQL  133 (530)
Q Consensus        73 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~~-~~g~v~~Lv~ll~~~~~~~i  133 (530)
                      .+++.++..|+.  +|.++...++..|..+.+....+                ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            378999999986  57788888999998888754321                122333 4577999999999888 899


Q ss_pred             HHHHHHHHHHHhcCChh-hHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009636          134 QFEAAWALTNIASGTSE-HTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (530)
Q Consensus       134 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~  211 (530)
                      +..++.+|..++...++ ..+.+.. .++++.|+.+|++..+.+|..++..|.+|+.+++..++.+.-.|+++.|+.++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999997776 5666664 489999999999999999999999999999999999999998899999999995


Q ss_pred             CCC---chhHHHHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhcCCChh------HHHH---HHHHHHHhccC-----
Q 009636          212 GQP---KLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDDE------VLTD---ACWALSYLSDG-----  273 (530)
Q Consensus       212 ~~~---~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~------v~~~---a~~~l~~l~~~-----  273 (530)
                      ...   ...+...|+.++.+|.+.++ +.......+++|.|..++..+++.      ...+   ++.++.-++..     
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            322   34678899999999999974 444555678999999998754322      3333   45555555543     


Q ss_pred             -ChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhc---------CchHHHHHhhcCCCc
Q 009636          274 -TNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEY---------QALPCLLNLLSGNYK  341 (530)
Q Consensus       274 -~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L~nl~~~~~~~~~~~~~~---------~~l~~L~~lL~~~~~  341 (530)
                       ...+...+.+.|++..|+.++...  ...++..|+.+++.+.++++.....+...         -++..|+.++.+.+.
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence             224566788999999999998875  56789999999999999998766665532         244445555666546


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHh----------Cc---HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009636          342 KSIKKEACWTVSNITAGNREQIQAVIEA----------NI---IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF  408 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  408 (530)
                      ..+|.+|+.++..+..++++....++..          +.   -..++..+-+.|+.----|+.+|.++... +++....
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~  457 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ  457 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence            8899999999999999887654444432          10   12344555556765556688888888885 4444444


Q ss_pred             HHH--------c---CChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009636          409 LVI--------Q---GCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT  476 (530)
Q Consensus       409 l~~--------~---~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~  476 (530)
                      +..        .   -.++.+..+|. ..++.+....+..|...+..++          ..+...+.+...++.|.....
T Consensus       458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p----------~AV~dFL~~~s~l~~L~~~i~  527 (651)
T 3grl_A          458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP----------IAVTHFLHNSANVPFLTGQIA  527 (651)
T ss_dssp             HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH----------HHHHHHHHSTTHHHHHHHHHH
T ss_pred             HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh----------HHHHHHHcCCchHHHHHHHHH
Confidence            333        1   11555556554 3455555555555554444433          335666776667888876543


Q ss_pred             -C-C--CHHHHHHHHHHHHHhCCCCCCC
Q 009636          477 -H-D--NAEIYEKSVKLLETYWLDDEDE  500 (530)
Q Consensus       477 -~-~--~~~v~~~a~~il~~~~~~~~~~  500 (530)
                       + .  +.-|+=.+.-++--+|+...++
T Consensus       528 ~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          528 ENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             hccCcchHHHHHHHHHHHHHHhhccCCC
Confidence             2 2  2346777777776665544433

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.71  E-value=1.3e-14  Score=145.34  Aligned_cols=410  Identities=16%  Similarity=0.144  Sum_probs=288.6

Q ss_pred             CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCChh
Q 009636           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~-~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      +.++.|.+.+.+. -.+.+..|+..|+.+...-    . ..+.+++++.|+..|+.. ++.++...++.+|.++.....+
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y----~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY----R-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT----T-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh----H-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            5789999988864 4789999999999885331    1 223355699999999865 3588888999999887774432


Q ss_pred             -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhc-CChHHHHHhh
Q 009636          151 -----------------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQ-GGLVPLLAQL  210 (530)
Q Consensus       151 -----------------~~~~~~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~~~i~~~-~~i~~Ll~ll  210 (530)
                                       ..+.+. +.+.++.|+.+|++.+..++..++.+|..|+...+. .++.++.. ++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             223333 467899999999999999999999999999988776 77777744 8999999999


Q ss_pred             cCCCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009636          211 NGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (530)
Q Consensus       211 ~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (530)
                       ++..+.++..++..|.+|+.+.+... .....++++.|+.++..+.    ..+..+++.++.++...+..+...+.+.|
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             77788999999999999999984443 4455799999999998654    47899999999999999988888899999


Q ss_pred             cHHHHHHhhCCCCc----h--hHHH---HHHHHhHhhcCCc------hhhHHHhhcCchHHHHHhhcCCC-chhHHHHHH
Q 009636          286 VFPRLAEFLMHPSP----S--VLIP---ALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC  349 (530)
Q Consensus       286 ~l~~L~~lL~~~~~----~--~~~~---al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~  349 (530)
                      .++.|..++..+..    .  ....   ++.++.-++....      .....+.+.|+++.|+.++.... ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            99999999975432    1  2222   5566666665432      23456678999999999987653 467999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC---------cHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc----C--
Q 009636          350 WTVSNITAGNREQIQAVIEAN---------IIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ----G--  413 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~--  413 (530)
                      .+++.+..+++.....+.+..         ++..|+.++.+. ...+|..|+.++..+..+. .+....+...    .  
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~  413 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTID  413 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCC
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCcccc
Confidence            999999999988777776532         344444445443 5889999999999999873 3333333322    0  


Q ss_pred             ----Ch---HHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcC------CCCchhhHHHhhhhccHHHHHH-HhcCCC
Q 009636          414 ----CI---KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG------NTDVNVFTQMIDDAEGLEKIES-LQTHDN  479 (530)
Q Consensus       414 ----~i---~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~l~~-l~~~~~  479 (530)
                          .+   ..|+.-+-+.|+--.-.+..++..++...+..+...      .+..++...      .++.+.. |....+
T Consensus       414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vt------liq~~~~~L~~~~~  487 (651)
T 3grl_A          414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVS------LLQQCTNILSQGSK  487 (651)
T ss_dssp             CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCB------HHHHHHHHTTTTCC
T ss_pred             cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCccc------HHHHHHHHHhcCCc
Confidence                01   123344445566433446666777776654433210      000010111      1333333 344566


Q ss_pred             HHHHHHHHHHHHHhCC
Q 009636          480 AEIYEKSVKLLETYWL  495 (530)
Q Consensus       480 ~~v~~~a~~il~~~~~  495 (530)
                      +.+.--...++-.|.-
T Consensus       488 ~ri~vgyL~LL~~WL~  503 (651)
T 3grl_A          488 IQTRVGLLMLLCTWLS  503 (651)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            7776666776666543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.69  E-value=2.4e-15  Score=141.59  Aligned_cols=258  Identities=14%  Similarity=0.133  Sum_probs=202.3

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009636          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  192 (530)
                      ...+.++.|+..|.+++ +.++..|+++|+++..  +         +.++.|+.++.++++.++..|+++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            34568999999999887 9999999999999873  2         3578899999999999999999999998643321


Q ss_pred             hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                      ..      ..++.|...+..+.+..++..++++|..+....+    .....+++.|..++.++++.++..++++++++..
T Consensus        88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            11      1233333333367889999999999999975431    1235678999999999999999999999998753


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                                 .+.++.|+.++.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       2578999999999999999999999999853222         3567899999988 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHH
Q 009636          353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVT  431 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~  431 (530)
                      +++..           ...++.|+..+.+++  ++..|+++|+.+...            .+++.|..++.. .+++++.
T Consensus       217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~------------~~~~~L~~~l~~~~~~~~~~  271 (280)
T 1oyz_A          217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK------------TLLPVLDTMLYKFDDNEIIT  271 (280)
T ss_dssp             HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG------------GGHHHHHHHHTTSSCCHHHH
T ss_pred             HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch------------hhhHHHHHHHhcCCCcHHHH
Confidence            99852           357889999997654  999999999998541            467888888864 5677777


Q ss_pred             HHHHHHH
Q 009636          432 VCLEGLE  438 (530)
Q Consensus       432 ~al~~l~  438 (530)
                      .+++.+.
T Consensus       272 ~~~~~l~  278 (280)
T 1oyz_A          272 SAIDKLK  278 (280)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7777664

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.68  E-value=7.7e-15  Score=152.84  Aligned_cols=332  Identities=15%  Similarity=0.123  Sum_probs=246.5

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.+++.+.+++..++..+...+..++...  +...    .-+++.+.+-|.+++ +.++..|+++|+++..  ++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~e~~----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--PDMA----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--HHHH----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--chHH----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence            36788999999999999988888888776431  2111    224677888888887 9999999999999863  5544


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+     ++.+.+++.++++.+|..|++++.+++...++   .+...++++.+..++ .+.++.++..|+++|..++..
T Consensus       120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            433     57899999999999999999999999876554   223346788889998 788999999999999999988


Q ss_pred             CCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          233 KPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       233 ~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      .+.. ........++.|+..+...++..+..++.++..++..++...     ..+++.+..++++.++.++..|++++..
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6533 233345567777887878889999999999988876544332     2567888889999999999999999999


Q ss_pred             hhcC---CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636          312 IVTG---DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       312 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      +...   +++..+.+ -..+.+.|+.++. + ++.+|..|+.+|+.++...++....     .+..+. .+.+.+..+|.
T Consensus       266 l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~  336 (591)
T 2vgl_B          266 FLELLPKDSDYYNML-LKKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKL  336 (591)
T ss_dssp             SCCSCCBTTBSHHHH-HHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHH
T ss_pred             HhhccCCCHHHHHHH-HHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHH
Confidence            9753   23333322 2355677776664 6 8899999999999998754432211     111121 12234589999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      .|++.|.+++...+.+        .++..|..++...|.+++..+++++..+....
T Consensus       337 ~al~~L~~l~~~~nv~--------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          337 EKLDIMIRLASQANIA--------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             HHHHHHHHTCCSSTHH--------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCChhhHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence            9999999998765422        24667778888889999999999998887544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.66  E-value=1.4e-14  Score=136.26  Aligned_cols=254  Identities=14%  Similarity=0.086  Sum_probs=199.7

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.++..|.++++.++..|++.|.++..            .++++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence            478999999999999999999999998741            235889999999888 9999999999999875322 11


Q ss_pred             HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..     +++.|. .++.++++.++..++++|+++....+...     ..+++.|+..+ .+.++.++..++++|.++..
T Consensus        89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            11     234444 24567889999999999999974433221     23577888888 78899999999999998764


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                                ...+|.|..++.++++.++..++++|+.+....+         .+++.|..++.++++.++..|+++|++
T Consensus       158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                      2478999999999999999999999999854332         345788889999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEA  390 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a  390 (530)
                      +..           ...++.|...+.++ +  ++..|+++|+.+..           ..+++.|..++.+. +.++...+
T Consensus       219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence            862           35688899999865 3  89999999999843           25788999998654 67888888


Q ss_pred             HHHHH
Q 009636          391 AWAIS  395 (530)
Q Consensus       391 ~~aL~  395 (530)
                      ..+|.
T Consensus       274 ~~~l~  278 (280)
T 1oyz_A          274 IDKLK  278 (280)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            77764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.65  E-value=3.3e-14  Score=148.62  Aligned_cols=336  Identities=17%  Similarity=0.128  Sum_probs=203.5

Q ss_pred             hcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcc------ccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChH
Q 009636           15 KYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG------LQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSG   88 (530)
Q Consensus        15 ~~k~~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~   88 (530)
                      ..++..+.+|.+++-.....+||+.-++....+|+...      ...+..         .   -.....+++.+.+++..
T Consensus        18 ~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d---------~---~~~~~~vik~~~s~~~~   85 (618)
T 1w63_A           18 TIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYP---------A---HFGQLECLKLIASQKFT   85 (618)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCC---------C---GGGHHHHHHHHHSSSHH
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCC---------C---cchHHHHHHHHcCCchH
Confidence            33455566667766666677888776543222222100      011110         0   13668888999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 009636           89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL  168 (530)
Q Consensus        89 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll  168 (530)
                      .+..+.-.+..++..  .+....+    ++..|.+-|.+++ +.++..|+++|+++..  ++...     .+++.+.+++
T Consensus        86 ~Krl~Yl~~~~~~~~--~~e~~~l----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L  151 (618)
T 1w63_A           86 DKRIGYLGAMLLLDE--RQDVHLL----MTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLL  151 (618)
T ss_dssp             HHHHHHHHHHHHCCC--CHHHHHH----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC--CcHHHHH----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHH
Confidence            888888888888654  2222111    4677888888888 8999999999999985  44332     4568889999


Q ss_pred             CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHH
Q 009636          169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL  248 (530)
Q Consensus       169 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L  248 (530)
                      .+.++.+|..|+.+++++....|+..     .++++.+..++ .+.++.++..|+++|..++...+.. ......++|.+
T Consensus       152 ~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l  224 (618)
T 1w63_A          152 KTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQL  224 (618)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHH
Confidence            99999999999999999987665432     24677778888 7889999999999999998764321 22334667766


Q ss_pred             HHhhcC---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCCchhHHHHHH
Q 009636          249 AHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALR  307 (530)
Q Consensus       249 ~~ll~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~~~~al~  307 (530)
                      +.+|..               .++..+..++.+++.++..++....     .+.+.|..++.      +.+..+...|++
T Consensus       225 ~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~  299 (618)
T 1w63_A          225 VRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVL  299 (618)
T ss_dssp             HHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            666542               4777888888888888765543211     22333333321      122345555555


Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      ++..+.. .+.    +. ..+++.|..++.++ ++.+|..|+.+|+.++...+..+     ....+.++.++.+++..+|
T Consensus       300 ~i~~l~~-~~~----l~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir  367 (618)
T 1w63_A          300 TIMDIKS-ESG----LR-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIK  367 (618)
T ss_dssp             HHHHSCC-CHH----HH-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHH
T ss_pred             HHHhcCC-CHH----HH-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHH
Confidence            5555432 111    11 12344455555544 55555555555555554333221     1133344444555555555


Q ss_pred             HHHHHHHHHhhcC
Q 009636          388 KEAAWAISNATSG  400 (530)
Q Consensus       388 ~~a~~aL~nl~~~  400 (530)
                      ..|+.+|..++..
T Consensus       368 ~~alelL~~l~~~  380 (618)
T 1w63_A          368 RRAMELSFALVNG  380 (618)
T ss_dssp             HHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHccc
Confidence            5555555555543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.63  E-value=3.1e-14  Score=155.92  Aligned_cols=355  Identities=14%  Similarity=0.183  Sum_probs=245.0

Q ss_pred             CHHHHHHhhcC-------CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009636           74 NLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (530)
Q Consensus        74 ~l~~l~~~l~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~  146 (530)
                      .+|.++..+..       +++.++..|..+|..++...+....     ..+++.+.+.+.+.+ ...+..|+++++.++.
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence            45667777764       2357888899998888754321111     235677777888777 8999999999999998


Q ss_pred             CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009636          147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (530)
Q Consensus       147 ~~~-~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a  222 (530)
                      +.. +.....+. .+++.++..+.++++.++..++|+|+.++......   ...  -..+++.++..+ .+. +.++..+
T Consensus       399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a  473 (861)
T 2bpt_A          399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNC  473 (861)
T ss_dssp             SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHH
Confidence            643 33333332 47888999999899999999999999998542110   011  123577778888 443 8899999


Q ss_pred             HHHhhhhccCCC----CCChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009636          223 TWTLSNFCRGKP----QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (530)
Q Consensus       223 ~~~L~~L~~~~~----~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  296 (530)
                      +|++.+++....    ..-......+++.|..++.+.+  +.++..++.+++.++..........+. .+++.++..+..
T Consensus       474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~  552 (861)
T 2bpt_A          474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ  552 (861)
T ss_dssp             HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence            999999987532    1122345677888888888544  789999999999988654433332332 355666665542


Q ss_pred             C---------------CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHHHHHHHHHHhcCCH
Q 009636          297 P---------------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNR  360 (530)
Q Consensus       297 ~---------------~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~  360 (530)
                      .               ...++..++.++++++...+...... -..+++.+..++... +. .++..++++++.++....
T Consensus       553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~  630 (861)
T 2bpt_A          553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG  630 (861)
T ss_dssp             HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred             HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence            1               34567789999999987554322111 235778888888877 66 899999999999986432


Q ss_pred             HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC--hHHHHHHHHHHH
Q 009636          361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD--PRIVTVCLEGLE  438 (530)
Q Consensus       361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~--~~~~~~al~~l~  438 (530)
                      ......+. .+++.|...+.+.++.++..++.++..++.........++  ..+++.+...+.+.+  +.++..++.++.
T Consensus       631 ~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~  707 (861)
T 2bpt_A          631 KGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG  707 (861)
T ss_dssp             GGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred             hhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence            32222222 3888999999888889999999999999875432222222  245677777777654  789999999999


Q ss_pred             HHHHhhh
Q 009636          439 NILKVGE  445 (530)
Q Consensus       439 ~ll~~~~  445 (530)
                      .++....
T Consensus       708 ~l~~~~~  714 (861)
T 2bpt_A          708 DIASNIG  714 (861)
T ss_dssp             HHHHHHG
T ss_pred             HHHHHhh
Confidence            9987653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.61  E-value=1.3e-13  Score=151.08  Aligned_cols=399  Identities=10%  Similarity=0.109  Sum_probs=264.1

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH--H
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--K  153 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~--~  153 (530)
                      +.+.+.+.+.++..+..|+.++..++...........+ ..+++.++..+.+++ +.++..++|+++.++.......  .
T Consensus       372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~  449 (861)
T 2bpt_A          372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQ  449 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            44445566888999999999999998553112222222 357899999998887 9999999999999986321100  0


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-----chhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhh
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-----PRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLS  227 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-----~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~  227 (530)
                      .. -..+++.++..+.++ +.++..|+|+|.+++...     ......+  ..+++.|+..+.. +.+..++..++.++.
T Consensus       450 ~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          450 QH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            00 113467888888765 899999999999997532     1122222  2356777777742 334788999999999


Q ss_pred             hhccCCCCCChhhhhchHHHHHHhhcCC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009636          228 NFCRGKPQPPFDQVSPALPALAHLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (530)
Q Consensus       228 ~L~~~~~~~~~~~~~~~l~~L~~ll~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  292 (530)
                      .++...+.........++|.++..+...               ...++..++.++..++............ .+++.++.
T Consensus       526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~  604 (861)
T 2bpt_A          526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred             HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence            9988765433344566777777766521               3457778889998887554332221222 56777888


Q ss_pred             hhCCCCc-hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Q 009636          293 FLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI  371 (530)
Q Consensus       293 lL~~~~~-~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  371 (530)
                      .+.+.+. .++..++.+++.++..........+ ..+++.+...+.+. ++.++..++++++.++..........+ ..+
T Consensus       605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l  681 (861)
T 2bpt_A          605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred             HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence            8888777 8999999999999865443322222 34888999999776 888999999999999874333333333 357


Q ss_pred             HHHHHHHHhcCc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC-----------hHHHHHHHHHHH
Q 009636          372 IGPLVALLENAE--FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-----------PRIVTVCLEGLE  438 (530)
Q Consensus       372 i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~-----------~~~~~~al~~l~  438 (530)
                      ++.++..+.+.+  ..++..++.+++.++.........++  ..+++.+...+....           ..++..+++++.
T Consensus       682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~  759 (861)
T 2bpt_A          682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            888888888764  88999999999999875333333333  235777777776431           347788888888


Q ss_pred             HHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC----CHHHHHHHHHHHHHhCC
Q 009636          439 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD----NAEIYEKSVKLLETYWL  495 (530)
Q Consensus       439 ~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~----~~~v~~~a~~il~~~~~  495 (530)
                      .++.......       ..+...+.  ..++.|.....+.    +.+++..|..++..+..
T Consensus       760 ~i~~~l~~~~-------~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          760 GIVAGLHDKP-------EALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHTTTCH-------HHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCH-------HHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            8885432100       00111111  1244554444332    88999999999887643

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.58  E-value=7.8e-14  Score=141.21  Aligned_cols=390  Identities=11%  Similarity=0.086  Sum_probs=268.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .+..++..+.++|.+++..|-..|.++....         ..+.+..|+.++.+++ ++.+|..|+..|.++........
T Consensus         2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~   72 (462)
T 1ibr_B            2 ELITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI   72 (462)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHH
Confidence            3567777888999999999999998864210         1345677888887653 48999999999999976431111


Q ss_pred             HH-----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHH
Q 009636          153 KV-----------VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSML  219 (530)
Q Consensus       153 ~~-----------~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~  219 (530)
                      ..           -....+-..|+..+.++++.+ ..++.+|+.++.......   .-.+.++.|+..+ .+.  +..++
T Consensus        73 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r  147 (462)
T 1ibr_B           73 KAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMK  147 (462)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred             HHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHH
Confidence            00           001123356777888877778 889999999974421100   0134688888888 445  88999


Q ss_pred             HHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhC
Q 009636          220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLM  295 (530)
Q Consensus       220 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~  295 (530)
                      ..++.+|..++... +.........+++.+..++.+.  ++.++..++++++++...-.+... .....-+++.+...+.
T Consensus       148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  227 (462)
T 1ibr_B          148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ  227 (462)
T ss_dssp             HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence            99999999999753 2222334466888899999887  789999999999987644322111 0111124666777778


Q ss_pred             CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--------------
Q 009636          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--------------  361 (530)
Q Consensus       296 ~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--------------  361 (530)
                      +.++.++..++++++.++...+......+..++++.++..+.+. ++.++..|++.+..++.....              
T Consensus       228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  306 (462)
T 1ibr_B          228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP  306 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence            88899999999999999875544322222226788888888887 899999999999998753110              


Q ss_pred             -------HHHHHHHhCcHHHHHHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh
Q 009636          362 -------QIQAVIEANIIGPLVALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP  427 (530)
Q Consensus       362 -------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~  427 (530)
                             .....+ ..++|.++..+..       .++.+|..|+.+|..++........     ..+++.+...+.++++
T Consensus       307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~  380 (462)
T 1ibr_B          307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDW  380 (462)
T ss_dssp             SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSH
T ss_pred             ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCCh
Confidence                   011111 3467777777743       2467999999999999875432221     2457778888899999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          428 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       428 ~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .++..++.+++.+........         +...+  ...+..|..+..++++.|+..|...+.++..
T Consensus       381 ~~r~aal~~l~~l~~~~~~~~---------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          381 RYRDAAVMAFGCILEGPEPSQ---------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHHHTSSSSCTTT---------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHH---------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999886432110         11112  3457788888899999999999999998865

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.58  E-value=1.6e-13  Score=150.61  Aligned_cols=404  Identities=14%  Similarity=0.149  Sum_probs=259.1

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH--
Q 009636           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--  152 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~--  152 (530)
                      ++.+...+.+.++.++..|+.++..++.......... .-..++|.++..+.+++ +.++..|+|+|++++...+...  
T Consensus       368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~  445 (876)
T 1qgr_A          368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAIN  445 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred             HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhccc
Confidence            4445566678899999999999999876531112222 22457999999999887 9999999999999998543210  


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc---------------hhhhhHhhcCChHHHHHhhcCCC--c
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP---------------RCRDLVLSQGGLVPLLAQLNGQP--K  215 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~---------------~~~~~i~~~~~i~~Ll~ll~~~~--~  215 (530)
                      .... ..+++.++..+.++ +.++..++|+|++++....               .....+  ..+++.|+..+....  +
T Consensus       446 ~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~  521 (876)
T 1qgr_A          446 DVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQ  521 (876)
T ss_dssp             TTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCS
T ss_pred             HHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcch
Confidence            0011 24567888888764 8899999999999984311               111111  235667777774322  4


Q ss_pred             hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC----------C-C----hhHHHHHHHHHHHhccCCh-HHHH
Q 009636          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----------N-D----DEVLTDACWALSYLSDGTN-DKIQ  279 (530)
Q Consensus       216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~----------~-d----~~v~~~a~~~l~~l~~~~~-~~~~  279 (530)
                      ..++..+..++..++...+.........+++.++..+..          . |    ++++..+++++..++.... ....
T Consensus       522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~  601 (876)
T 1qgr_A          522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL  601 (876)
T ss_dssp             TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh
Confidence            567788889999888876544445556777777666542          1 2    4567788999999887654 3333


Q ss_pred             HHHHhCcHHHHHHhhCCCC--chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          280 AVIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~~--~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ... ..+++.++.++.+..  +.++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++.
T Consensus       602 ~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~  679 (876)
T 1qgr_A          602 QIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCR  679 (876)
T ss_dssp             TTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence            232 357788888888764  478999999999998643322222222 3678888888764367899999999999986


Q ss_pred             CCHHHHHHHHHhCcHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC----Ch----
Q 009636          358 GNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP----DP----  427 (530)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~----~~----  427 (530)
                      .....+...+ ..+++.++..+.+  .+.+++..+++++++++.....+...++  ..+++.|...+...    ++    
T Consensus       680 ~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~  756 (876)
T 1qgr_A          680 ALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVD  756 (876)
T ss_dssp             HHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHH
T ss_pred             HHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHH
Confidence            4323333333 3578888888887  3678999999999999863222222222  23455666666533    22    


Q ss_pred             ---HHHHHHHHHHHHHHHhhhhhhhc-C--CCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Q 009636          428 ---RIVTVCLEGLENILKVGEAEKNL-G--NTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYW  494 (530)
Q Consensus       428 ---~~~~~al~~l~~ll~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~il~~~~  494 (530)
                         .++..++.++..++......... .  .....+|...+     +..+..+..++  ++.++..|...+..+.
T Consensus       757 ~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~  826 (876)
T 1qgr_A          757 YLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC  826 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence               67788888888887654321000 0  00112222222     34444444555  7899999988887754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.58  E-value=3.6e-13  Score=140.71  Aligned_cols=369  Identities=14%  Similarity=0.106  Sum_probs=238.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..+.+.++++++.++..|++++.++..    +   .+. ..+++.+..++.+++ +.++..|+.++.++...+++...
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence            56778888889999999999999998852    1   122 346888999999988 99999999999999987665432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--------------CCchhHH
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML  219 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--------------~~~~~~~  219 (530)
                           ++++.+..++.+.++.++..|+++|+.++..++.....+  ...++.++.+|..              ..++-.+
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence                 678888899999999999999999999987665422222  2356666665531              2355666


Q ss_pred             HHHHHHhhhhccCCCCCC--------------------------------------hhhhhchHHHHHHhhcCCChhHHH
Q 009636          220 RNATWTLSNFCRGKPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLT  261 (530)
Q Consensus       220 ~~a~~~L~~L~~~~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~  261 (530)
                      ..++.+|..++...+...                                      ......+++.|..++.+.++.++.
T Consensus       252 ~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~  331 (618)
T 1w63_A          252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY  331 (618)
T ss_dssp             HHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence            666666666665431100                                      000112445556666666677777


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009636          262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK  341 (530)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  341 (530)
                      .++.++..++...+.    .+. .....++.++.+++..++..|+.++..++....  ..     .+++.|...+.+. +
T Consensus       332 ~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~-----~iv~eL~~~l~~~-d  398 (618)
T 1w63_A          332 VALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IR-----GMMKELLYFLDSC-E  398 (618)
T ss_dssp             HHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--TH-----HHHHHHHHHHHHC-C
T ss_pred             HHHHHHHHHHhhCHH----HHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HH-----HHHHHHHHHHHhC-C
Confidence            777777666643322    111 345567777777777788888887777775332  11     2456777777777 8


Q ss_pred             hhHHHHHHHHHHHHhcCC---HH-HHHHHH----------------------H------hCcHHHHHHHHhc--CchhHH
Q 009636          342 KSIKKEACWTVSNITAGN---RE-QIQAVI----------------------E------ANIIGPLVALLEN--AEFDIK  387 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~---~~-~~~~l~----------------------~------~~~i~~L~~ll~~--~~~~v~  387 (530)
                      .++|..++.+|+.++...   .. .+..++                      .      ..++..|++.+..  ....+.
T Consensus       399 ~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~  478 (618)
T 1w63_A          399 PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV  478 (618)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH
Confidence            899999999999998732   11 111111                      0      1134455555553  223444


Q ss_pred             HHHHHHHHHhhcCC-------------CHHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHHhhhhhhhcCC
Q 009636          388 KEAAWAISNATSGG-------------THEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGN  452 (530)
Q Consensus       388 ~~a~~aL~nl~~~~-------------~~~~~~~l~~~~~i~~L~~lL~--~~~~~~~~~al~~l~~ll~~~~~~~~~~~  452 (530)
                      ..++|+|+......             ++.        .+++.|..+++  ..++.++..++.++.++....+..     
T Consensus       479 ~~~~wilGEy~~~i~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~-----  545 (618)
T 1w63_A          479 QVAAWCIGEYGDLLVSGQCEEEEPIQVTED--------EVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT-----  545 (618)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSSCCCCCCHH--------HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC-----
T ss_pred             HHHHHHHhhhHHHhcccccccccccCCCHH--------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch-----
Confidence            45777777665310             111        12344444443  467889999999998887655321     


Q ss_pred             CCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          453 TDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       453 ~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                            ...+     ...|.....+.|.+|+++|...+.-+..
T Consensus       546 ------~~~l-----~~~L~~~~~~~d~evrdRA~~y~~ll~~  577 (618)
T 1w63_A          546 ------VNRI-----KKVVSIYGSSIDVELQQRAVEYNALFKK  577 (618)
T ss_dssp             ------HHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             ------HHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence                  1112     2345666789999999999987765443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.58  E-value=2.7e-13  Score=148.68  Aligned_cols=276  Identities=19%  Similarity=0.210  Sum_probs=194.2

Q ss_pred             HHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcH-HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      ++.+...+.++  ++.++..|+.++..++..- .... .......+++.+...+.+.+ +.++..++.+|..++...+..
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            44555666665  6789999999999887542 1111 01111236777788877776 899999999999999866555


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch------------------hhhhH--hhcCChHHHHHhhc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR------------------CRDLV--LSQGGLVPLLAQLN  211 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~------------------~~~~i--~~~~~i~~Ll~ll~  211 (530)
                      ....+...+++.++..+.+.++.++..+++++..++.....                  .....  .-..+++.++..+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~  331 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence            44444447788888888888899999999999888743100                  00000  00234666677663


Q ss_pred             C------CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHh
Q 009636          212 G------QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEA  284 (530)
Q Consensus       212 ~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~  284 (530)
                      .      +.+..++..+..++..++...+   ......+++.+...+.+.+..++..++++++.++.... +...... .
T Consensus       332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~  407 (876)
T 1qgr_A          332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I  407 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence            2      2356788899999988887643   13356778888888888899999999999999997654 3333333 3


Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh-HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009636          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (530)
Q Consensus       285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  358 (530)
                      .+++.++..+.++++.++..|++++++++...+... ..-.-..+++.++..+.+  ++.++..++|+|++++..
T Consensus       408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999997543311 001123567788888865  478999999999999853

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.57  E-value=2.1e-14  Score=145.48  Aligned_cols=362  Identities=14%  Similarity=0.094  Sum_probs=244.6

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCc----------HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHH
Q 009636           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPP----------IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWAL  141 (530)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~----------~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L  141 (530)
                      .+..++..+.++  ++.+|..|+..|++++.....+.          +..-....+-..|+..|.+++ +.+ ..++.++
T Consensus        36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i  113 (462)
T 1ibr_B           36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV  113 (462)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence            345566666653  67899999999999985421000          000112234556777888777 677 8899999


Q ss_pred             HHHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCC-chh
Q 009636          142 TNIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP-KLS  217 (530)
Q Consensus       142 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~-~~~  217 (530)
                      +.++.......   .-.++++.|+..+.++  ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.+.. +..
T Consensus       114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~  189 (462)
T 1ibr_B          114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN  189 (462)
T ss_dssp             HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence            99987321100   0136789999999887  8999999999999998643 22111111 236677778884332 789


Q ss_pred             HHHHHHHHhhhhccCCC-C-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009636          218 MLRNATWTLSNFCRGKP-Q-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~-~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  295 (530)
                      ++..+++++.++..... . ........+++.+...+.+.+++++..+++++..++..........+..++++.++..+.
T Consensus       190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (462)
T 1ibr_B          190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (462)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999998764321 0 011111235677777778889999999999999988654432222222266777788888


Q ss_pred             CCCchhHHHHHHHHhHhhcCCch-----------------hhHHHh---hcCchHHHHHhhcCC------CchhHHHHHH
Q 009636          296 HPSPSVLIPALRTVGNIVTGDDM-----------------QTQCVI---EYQALPCLLNLLSGN------YKKSIKKEAC  349 (530)
Q Consensus       296 ~~~~~~~~~al~~L~nl~~~~~~-----------------~~~~~~---~~~~l~~L~~lL~~~------~~~~v~~~a~  349 (530)
                      +.++.++..++..++.++.....                 ....++   -..++|.++..+...      .+..+|..|+
T Consensus       270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~  349 (462)
T 1ibr_B          270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  349 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHH
Confidence            88999999999999888753200                 000011   134667777777432      1457999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHH
Q 009636          350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI  429 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  429 (530)
                      .+|..++...++   .++ ..+++.+...+.+.++.+|..|+.+|+.++.+..++.....+ ..+++.++.++.++++.+
T Consensus       350 ~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~V  424 (462)
T 1ibr_B          350 VCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVV  424 (462)
T ss_dssp             HHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHH
Confidence            999999874332   122 246778888888889999999999999999865432211111 457889999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 009636          430 VTVCLEGLENILKVGEA  446 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~  446 (530)
                      +..++++|.++......
T Consensus       425 r~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          425 RDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999999976543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.52  E-value=1.9e-12  Score=146.98  Aligned_cols=404  Identities=12%  Similarity=0.126  Sum_probs=270.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.++..+.+.|++++..|...|.+.+.... .....-....+++.+++.|.+++ +.+|..|+.+|+.++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~-~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccc-cCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            46899999999999999999999998875431 11111112346888999998777 999999999999999754431  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh------hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~------~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~  227 (530)
                      .+  ..+++.|+..+.++++.+|..++.+|+.++......      ... .-..+++.|+..+.++.+..++..++.++.
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            11  235678888888888899999999999998543321      111 122478888888843578899999999999


Q ss_pred             hhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-chhHHHHH
Q 009636          228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPAL  306 (530)
Q Consensus       228 ~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~~~~al  306 (530)
                      .++...+..-......+++.+...+.++++.++..++.+++.++......   ++ ..+++.++..|.+.+ +.++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence            99865432222345778889999999889999999999999998765432   12 246777777776543 46788889


Q ss_pred             HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh------
Q 009636          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE------  380 (530)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------  380 (530)
                      .+++.++...+..... .-..+++.++..+.+. ++.+|..+++++..++...++.+...+ ..+++.++..+.      
T Consensus       236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCC
Confidence            9999988654432211 1246899999999887 899999999999999874332221111 123444433331      


Q ss_pred             -------------------------------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHH
Q 009636          381 -------------------------------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI  429 (530)
Q Consensus       381 -------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  429 (530)
                                                     +..+++|..|+.++..++.... +....+ -..+++.+...+.+.++.+
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~-~~~l~~~l~~~l~d~~~~V  390 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENV  390 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHH
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHH-HHHHHHHHHHHcCCCchHH
Confidence                                           1124679999999999987433 212221 2456788888898889999


Q ss_pred             HHHHHHHHHHHHHhhhhhhh-cCC-------CCc-hhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          430 VTVCLEGLENILKVGEAEKN-LGN-------TDV-NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~~~~-~~~-------~~~-~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      +..++.++..++........ ...       .+. ..+...+  ...++.+.....++++.++..+...+..+..
T Consensus       391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            99999999888764311000 000       000 0011111  1234555565677888888877777776544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.44  E-value=9.8e-12  Score=111.43  Aligned_cols=188  Identities=22%  Similarity=0.212  Sum_probs=157.8

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC
Q 009636          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP  237 (530)
Q Consensus       158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~  237 (530)
                      .+.++.|+..|.++++.++..+++.|+.+..           ...++.|+.++ .+.+..++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            3568999999999999999999999998742           23688899999 67899999999999998853      


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~  317 (530)
                          ...++.|..++.++++.++..++++|+.+..           .+.++.|+.++.++++.++..|+.+|+.+..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                4578999999999999999999999998853           2467889999999999999999999999853   


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                              ...++.|..++.++ ++.+|..|+++|+.+..           ...++.|..++.++++.||..|..+|.++
T Consensus       142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                    24678899999888 99999999999999943           23677888999999999999999999999


Q ss_pred             hcCC
Q 009636          398 TSGG  401 (530)
Q Consensus       398 ~~~~  401 (530)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.44  E-value=6.9e-12  Score=142.38  Aligned_cols=398  Identities=12%  Similarity=0.121  Sum_probs=259.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc----HHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCC
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~v~~Lv~ll~~-~~~~~i~~~a~~~L~~l~~~~  148 (530)
                      .++.++..+.++++.+|..|+.++..++..-....    ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            46777788888888899999999998876532220    1111234579999999984 55 899999999999998522


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      +....... ..+++.|+..+.++++.++..|+.+|+.++...+.   .+ -...++.++..+....+...+..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            11110000 23467777788888899999999999999865432   11 223577788777544445677778888888


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC------------
Q 009636          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------  296 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~------------  296 (530)
                      ++...+..-......++|.+...+.+.+++++..+++++..++........... ..+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            887643322234578899999999988999999999999888765332212122 1344444444421            


Q ss_pred             -------------------------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009636          297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (530)
Q Consensus       297 -------------------------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (530)
                                               ..|.++..|+.++..++...+......+ ..+++.+...+.+. +..+|..++.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     1356788999999999875443222232 46788888888777 88999999998


Q ss_pred             HHHHhcC--C-----------------HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009636          352 VSNITAG--N-----------------REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       352 L~nl~~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      +..++..  .                 .......+ ..+++.+...+.+.++.+|..++.+|..++.........+  -.
T Consensus       398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~--l~  474 (1230)
T 1u6g_C          398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH--IP  474 (1230)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG--HH
T ss_pred             HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHH--HH
Confidence            8877641  1                 11112222 2467777777888899999999999999887532111111  12


Q ss_pred             CChHHHHhccCCCCh--HHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009636          413 GCIKPLCDLLVCPDP--RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL  490 (530)
Q Consensus       413 ~~i~~L~~lL~~~~~--~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il  490 (530)
                      .+++.+...|....+  .++..++..+..++......         .+...+  ...+..|.....+++..|...|...+
T Consensus       475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~---------~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l  543 (1230)
T 1u6g_C          475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ---------VFHPHV--QALVPPVVACVGDPFYKITSEALLVT  543 (1230)
T ss_dssp             HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG---------GGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH---------HHHhHH--HHHHHHHHHHHcccchHHHHHHHHHH
Confidence            357788888887654  78888888888887532211         122222  13355666656667777766665555


Q ss_pred             HHhC
Q 009636          491 ETYW  494 (530)
Q Consensus       491 ~~~~  494 (530)
                      ..+.
T Consensus       544 ~~l~  547 (1230)
T 1u6g_C          544 QQLV  547 (1230)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.42  E-value=2.8e-11  Score=107.49  Aligned_cols=185  Identities=23%  Similarity=0.226  Sum_probs=157.4

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh
Q 009636          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (530)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~  238 (530)
                      +..+.++..|.++++.++..|+++|+.+..           .+.++.|+..+ .+.+..++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            456889999999999999999999998742           13688899999 78899999999999998853       


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009636          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~  318 (530)
                         ...++.|..++.++++.++..++++|+.+..           ...++.|+.++.++++.++..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               3578999999999999999999999998753           2467888999999999999999999999853    


Q ss_pred             hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .+         ..++.|..++.++++.+|..|..+|.++-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   35678899999988 9999999999999993  22         26778888899999999999999999875


Q ss_pred             c
Q 009636          399 S  399 (530)
Q Consensus       399 ~  399 (530)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.41  E-value=1.2e-11  Score=110.75  Aligned_cols=188  Identities=22%  Similarity=0.186  Sum_probs=157.7

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (530)
                      .+.++.|+.+|.+++ +.++..|++.|+.+..           .+.++.|+.++.++++.++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457999999999887 9999999999998764           2568999999999999999999999999842      


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                           .+.++.|+..+ .+.++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23678888988 78899999999999998853          3578999999999999999999999999843  


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                               ...++.|..++.++++.++..|+.+|+.+..           ...++.|..++.++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2467889999999999999999999999853           23577888899888 99999999999999


Q ss_pred             HhcCC
Q 009636          355 ITAGN  359 (530)
Q Consensus       355 l~~~~  359 (530)
                      +....
T Consensus       201 ~~~~~  205 (211)
T 3ltm_A          201 HKSFN  205 (211)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            97643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.39  E-value=2e-10  Score=119.58  Aligned_cols=374  Identities=13%  Similarity=0.093  Sum_probs=251.7

Q ss_pred             CCCchHHhhhhhhHHHHHHHHhhh----HHHHhhhhcc-----ccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHH
Q 009636           19 AVDADEGRRRREDNMVEIRKNKRE----ESLQKKRREG-----LQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGV   89 (530)
Q Consensus        19 ~~~~~e~~~~r~~~~~~lRk~~r~----~~l~~~R~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~   89 (530)
                      ..+.+|.+++-.....++|++-+.    ..-.+++.+.     .-.+..            --.....+++.+.+++...
T Consensus        23 ~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d------------~s~~~~~vvkl~~s~~~~~   90 (621)
T 2vgl_A           23 CKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD------------IDFGHMEAVNLLSSNRYTE   90 (621)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC------------CCSCHHHHHHGGGCSCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC------------CchhHHHHHHHhcCCCHHH
Confidence            455667777777777888877662    1222222110     001110            0147789999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-
Q 009636           90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL-  168 (530)
Q Consensus        90 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-  168 (530)
                      +..+.-.+..++...  +..-.+    ++..+.+=+.+++ +.++..|+++|+++..  ++...     .+++.+.+.+ 
T Consensus        91 Krl~YL~l~~~~~~~--~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~  156 (621)
T 2vgl_A           91 KQIGYLFISVLVNSN--SELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE-----AFAGEIPKILV  156 (621)
T ss_dssp             HHHHHHHHHHSCCCC--HHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHH
T ss_pred             HHHHHHHHHHHccCC--cHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHh
Confidence            998988888876442  221111    3566777778888 9999999999999965  55443     3468899999 


Q ss_pred             -CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009636          169 -YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (530)
Q Consensus       169 -~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~  247 (530)
                       .+.++.++..|+.++.++....|+.   +...+.++.+.++| .+.++.++.+|+.++..++...+..-......++..
T Consensus       157 ~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~  232 (621)
T 2vgl_A          157 AGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSR  232 (621)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence             8899999999999999998755532   22247888999999 788999999999999999886532100112223333


Q ss_pred             HHHhhcCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhC---------CCC--chhH
Q 009636          248 LAHLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLM---------HPS--PSVL  302 (530)
Q Consensus       248 L~~ll~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~---------~~~--~~~~  302 (530)
                      |..++...             ++..+..++..+..++... ++....+.  +++..++..+.         +.+  ..+.
T Consensus       233 L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl  310 (621)
T 2vgl_A          233 LSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVL  310 (621)
T ss_dssp             HHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHH
Confidence            33443221             6788899999998887643 33333222  23444443321         122  2778


Q ss_pred             HHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-c
Q 009636          303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-N  381 (530)
Q Consensus       303 ~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~  381 (530)
                      ..|+.++..+.. .+...     ..++..|..++.+. ++.+|..|+..|..++...+. . ..+ ......++..+. +
T Consensus       311 ~ea~~~i~~l~~-~~~~~-----~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~~-~~~~~~i~~~L~~d  380 (621)
T 2vgl_A          311 FEAISLIIHHDS-EPNLL-----VRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EAV-KTHIETVINALKTE  380 (621)
T ss_dssp             HHHHHHHHHHCC-CHHHH-----HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HHH-HTTHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCC-cHHHH-----HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HHH-HHHHHHHHHHhccC
Confidence            888888888752 22211     23567788888877 899999999999999875432 1 122 246778888888 8


Q ss_pred             CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636          382 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       382 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~  442 (530)
                      +|..++..++..|..++..   .....     ++..|...+...|.+++..++.++..+..
T Consensus       381 ~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          381 RDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             CCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            8999999999999999763   33333     45566666666788877777777777654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.39  E-value=2.5e-11  Score=107.82  Aligned_cols=184  Identities=22%  Similarity=0.190  Sum_probs=157.3

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +..+.++++|.+++ +.++..|+++|+.+..           .+.++.|+.++.++++.++..++++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            45788999999998 9999999999998764           2467899999999999999999999999842       


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                          ...++.|+..+ .+.++.++..++++|..+..          ...++.|..++.++++.++..++++++.+..   
T Consensus        75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                13678888988 77899999999999998753          3578899999999999999999999999853   


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       276 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                              .+.++.|..++.++++.++..|+++|+.+..           ...++.|..++.++ ++.+|..|.++|.++
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    2567889999999999999999999999842           23577888889888 999999999999987


Q ss_pred             h
Q 009636          356 T  356 (530)
Q Consensus       356 ~  356 (530)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.27  E-value=4.4e-10  Score=117.01  Aligned_cols=330  Identities=12%  Similarity=0.113  Sum_probs=222.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL--LREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll--~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      .+..+.+.++++++.++-.|++++.++..    +.   +. ..++|.+.+++  .+.+ +.++..|+.++..+...+++.
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e---~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS----RE---MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH---HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH---HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence            45677778889999999999999998842    21   22 23678888998  7777 999999999999999866654


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh----cC--C----------Cc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL----NG--Q----------PK  215 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll----~~--~----------~~  215 (530)
                      ..   ..++++.+..+|.+.++.++..|+.+|..++...+..   +  ...++.++..|    ..  .          ++
T Consensus       183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence            32   2478999999999999999999999999998766531   1  12334444333    11  1          15


Q ss_pred             hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh---------cCCC--hhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009636          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA  284 (530)
Q Consensus       216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll---------~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~  284 (530)
                      +-.+...+..+..++.............+++.++..+         .+.+  ..|...++.++..+.. ..+...     
T Consensus       255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----
T ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----
Confidence            6778888888888875321111111222333333222         1222  3788888889888863 222222     


Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHH
Q 009636          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQI  363 (530)
Q Consensus       285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (530)
                      .++..|..+|.+.++.++..++.++..++...+..  ..+ ......++..|. ++ +..+|..++.+|..++.  +.++
T Consensus       329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv  402 (621)
T 2vgl_A          329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EAV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA  402 (621)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HHH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HHH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence            35677888898899999999999999999765421  122 346778888888 77 89999999999999974  3444


Q ss_pred             HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                      ..     ++..|...+...+.+++..++.+++.++..-.+.. .     -+++.|++++......+...+...+..++..
T Consensus       403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~-----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~  471 (621)
T 2vgl_A          403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-T-----WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN  471 (621)
T ss_dssp             HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-H-----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred             HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence            33     55678888888899999999999999875211111 1     1355666666544333444444555555543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.10  E-value=9.8e-09  Score=84.41  Aligned_cols=218  Identities=15%  Similarity=0.162  Sum_probs=176.5

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC
Q 009636          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP  236 (530)
Q Consensus       157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  236 (530)
                      +..++..++.+|.++-+.++.+|+..+.+++...++....     .+..|+.++..+....+......++..++...|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            3456888999999888999999999999999888875444     466777887788888888888899999987653  


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC
Q 009636          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~  316 (530)
                        ....+++|.+..-..-.|+.++.+...+|..++...+....     +++.-+..++.+.+..-+..|+..++.+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              46678899998888888999999999999999987775444     56778899999888778888888888887655


Q ss_pred             chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHH
Q 009636          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN  396 (530)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n  396 (530)
                      ..+.     ...+|.|..+|.+. +.-||..|.-+|.+++..++..+. +     +..-++-+++.+..+++....+|+.
T Consensus       176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRk-i-----i~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRK-V-----VIKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHH-H-----HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHH-H-----HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            4433     45799999999999 999999999999999998887433 2     2234455677788899999999988


Q ss_pred             hhcC
Q 009636          397 ATSG  400 (530)
Q Consensus       397 l~~~  400 (530)
                      ++.-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8753

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.07  E-value=2.5e-09  Score=112.84  Aligned_cols=216  Identities=16%  Similarity=0.123  Sum_probs=156.0

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCC-Cch
Q 009636          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGD-SPR  192 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~-~~~  192 (530)
                      ..++| +++.|++++ +..|..|+++|++|+. ++..+..+...+++..++ .+|.+++.+++..|+++|.||+.+ .+.
T Consensus        34 ~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           34 DKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            44555 556789888 8999999999999998 788888888888887765 568889999999999999999954 466


Q ss_pred             hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                      .+..+...|++++|+.++..         ....+..+......... .....+           .++...++.+|.+++.
T Consensus       111 ~~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~e  169 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLAL  169 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHh---------hHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHHh
Confidence            78888999999999998831         22222222211100000 001111           1244567778888888


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHhhcCCchhhHHHhhcCch---HHHHHhhcCCCchhHHH
Q 009636          273 GTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKK  346 (530)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~---~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~  346 (530)
                      .+.+....+...+.++.|+..|.+.   ...++..|+.+|..++..++...+.+.+.+..   ..+..+..+  ....+.
T Consensus       170 ~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~~  247 (684)
T 4gmo_A          170 ARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRAV  247 (684)
T ss_dssp             HCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTHH
T ss_pred             CCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHHH
Confidence            8877777788888999999988543   35789999999999999998888888776643   333333333  344578


Q ss_pred             HHHHHHHHHh
Q 009636          347 EACWTVSNIT  356 (530)
Q Consensus       347 ~a~~~L~nl~  356 (530)
                      .+|++|.|+.
T Consensus       248 la~giL~Ni~  257 (684)
T 4gmo_A          248 MACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhHh
Confidence            8999999975

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.05  E-value=3.3e-08  Score=104.21  Aligned_cols=273  Identities=14%  Similarity=0.137  Sum_probs=191.6

Q ss_pred             CHHHHHHhhc---CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 009636           74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN  143 (530)
Q Consensus        74 ~l~~l~~~l~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-------~~~i~~~a~~~L~~  143 (530)
                      .+..+-+.|.   ++++.++.-|+..|.-+-++...    .     ++..|...|.+++       .+.++..|+..|+.
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4555556666   56778888899888877655321    1     3666777776543       36788899999999


Q ss_pred             HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009636          144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (530)
Q Consensus       144 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~  223 (530)
                      +..++...       .+++.|..++.+++..+++.|+.+|+.+..+... .      .++..|+..+..+.+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHH
Confidence            87655321       2356788888777777788999999987433321 1      14566676665566789999999


Q ss_pred             HHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-hCCCCc
Q 009636          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSP  299 (530)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~  299 (530)
                      .+|..+..+.        ...++.++..|. +.++.++..++.+++.  ...++...         ++.|+.. ..+.+.
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence            9999887664        234556666655 4678888887777654  33444333         3333333 345677


Q ss_pred             hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009636          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL  379 (530)
Q Consensus       300 ~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  379 (530)
                      .++..|+..|+.++.++++.         ++.++..|.+..++.+|..|+++|+.++.+++.       ..++..|..++
T Consensus       593 ~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~  656 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHc
Confidence            89999999999998877532         455555554444999999999999999987653       13667888888


Q ss_pred             hcCchhHHHHHHHHHHHhhcCCC
Q 009636          380 ENAEFDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       380 ~~~~~~v~~~a~~aL~nl~~~~~  402 (530)
                      .+.+..|+..|+.+|+.+..+.+
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999987654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.88  E-value=9.6e-09  Score=108.38  Aligned_cols=197  Identities=15%  Similarity=0.087  Sum_probs=149.5

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH-HHhhCCCCchhHHHHHHHHhHhhcCC-chh
Q 009636          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL-AEFLMHPSPSVLIPALRTVGNIVTGD-DMQ  319 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~~~~~al~~L~nl~~~~-~~~  319 (530)
                      ..++|. +..|+++++..+..||++|++++. +....+.+...+++..+ ..+|.+++..++..|+++|+||+... ...
T Consensus        34 ~~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILPV-LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHHH-HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHH-HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            345554 456899999999999999999997 45556667777888765 56788899999999999999998643 466


Q ss_pred             hHHHhhcCchHHHHHhhcCCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009636          320 TQCVIEYQALPCLLNLLSGNY-------------K-------KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL  379 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  379 (530)
                      ...++..|+++.|..++....             .       ..+...++++|.++|.++.+....+...+.++.|+..+
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            678889999999999885310             0       12345678899999988888888888889999999988


Q ss_pred             hcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh---HHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636          380 ENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       380 ~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i---~~L~~lL~~~~~~~~~~al~~l~~ll~  442 (530)
                      .+.   ..+++..|+.+|.+++.. +++....+.+.+..   ..+..+.+..++ .+..+++.|.+++.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~  258 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence            543   368999999999999986 66778887776653   333333334443 34456778888764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.87  E-value=1.4e-07  Score=81.30  Aligned_cols=226  Identities=17%  Similarity=0.159  Sum_probs=171.2

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009636          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~  321 (530)
                      ...+..|..++...|+.++.+++.++..+....++......-..+++.++.++.+.+..+...|++++..+..+.+-.-+
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45678899999999999999999999999877544444444447899999999999999999999999999987663322


Q ss_pred             HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      ...  .+...|..++.++ ++-++.+|+-.++-+--.++.       .+++..+..++.+.+.+++..++.+|.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            222  3466788888877 899999999999998332211       136678888898889999999999999998843


Q ss_pred             -CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCC
Q 009636          402 -THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDN  479 (530)
Q Consensus       402 -~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~  479 (530)
                       +++.     -.+++.-+-.+|+++|+.++..++.++..++...-.        .| ...-+  .+.......|. -...
T Consensus       182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--------~~-~~~~~--~~~~~~v~~l~~~~~~  245 (265)
T 3b2a_A          182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--------EN-VKIEL--LKISRIVDGLVYREGA  245 (265)
T ss_dssp             SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--------SC-CHHHH--HHHHHHHHHGGGCSSC
T ss_pred             CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--------Hh-HHHHH--HHHHHHHHHHHHhcCC
Confidence             2221     235677888899999999999999999999876322        11 11111  33455666777 6788


Q ss_pred             HHHHHHHHHHHHHh
Q 009636          480 AEIYEKSVKLLETY  493 (530)
Q Consensus       480 ~~v~~~a~~il~~~  493 (530)
                      |.+..+|..+-+..
T Consensus       246 ~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          246 PIIRLKAKKVSDLI  259 (265)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999998776653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.86  E-value=6e-07  Score=73.99  Aligned_cols=217  Identities=14%  Similarity=0.163  Sum_probs=167.5

Q ss_pred             hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHH
Q 009636          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDK  277 (530)
Q Consensus       199 ~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~  277 (530)
                      +..++..++.+| ++.-..++.+|+..+.+++...+    ......+..|+.+++ +..-.....+..+++.++...++.
T Consensus        30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            445788889998 77778899999999999998754    234555666666655 445667788889999998877765


Q ss_pred             HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       278 ~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      +.     ++++.+..-..-++++++....++|..++..++...     .+++.-+..++.+. +..=|..|...++-+..
T Consensus       105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltsk-d~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSK-NREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred             HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence            55     567888888888999999999999999999888654     35567788999977 77677777777777766


Q ss_pred             CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHH
Q 009636          358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGL  437 (530)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l  437 (530)
                      .....+     ..++|.|+.+|.+.+.-||..|..+|.+++.. ++..++.      +...+.-+++.+..+....-.+|
T Consensus       174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred             cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence            555443     35789999999999999999999999999997 4554333      33444556777778888888888


Q ss_pred             HHHHHh
Q 009636          438 ENILKV  443 (530)
Q Consensus       438 ~~ll~~  443 (530)
                      ..+.-.
T Consensus       242 ~rl~l~  247 (253)
T 2db0_A          242 SRLLLL  247 (253)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            888654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.86  E-value=1.5e-07  Score=89.34  Aligned_cols=278  Identities=13%  Similarity=0.075  Sum_probs=163.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      ....+++.+.++|...+...--.+..++... .+.+  +    ++..|.+=+++++ +-++-.|+++|+++..  ++...
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence            5677888999999999988888888776542 2222  1    4677888888888 9999999999999987  44443


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .     +.+.+.+.+.+.++-++..|+.+...+....|+..     .+++..+-+++ .+.++.++.+|+.++..++..+
T Consensus       139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence            3     35778889999999999999999999988877532     25888888888 7788899999999999998753


Q ss_pred             CCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636          234 PQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~  310 (530)
                              ...+..++.-+...   ++..+...++.+..++..++.    -....+++.+...|++.++.+...|++++.
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~----~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~  275 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG----SRDSPLFDFIESCLRNKHEMVVYEAASAIV  275 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHT
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence                    11333344444332   455555566666555544311    122367788889999999999999999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      .+......    .. ..++..|..++.++ ++.+|..|...|..++...|..++.     .-..+.+++.+++..+...|
T Consensus       276 ~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~A  344 (355)
T 3tjz_B          276 NLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLA  344 (355)
T ss_dssp             C----------------CCCTHHHHHHSS-SSSSHHHHHHCC--------------------------------------
T ss_pred             hccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence            88652221    11 34456677778888 8999999999999998876664432     33456677888887776666


Q ss_pred             HHHHH
Q 009636          391 AWAIS  395 (530)
Q Consensus       391 ~~aL~  395 (530)
                      +.+|.
T Consensus       345 ittll  349 (355)
T 3tjz_B          345 ITTLL  349 (355)
T ss_dssp             -----
T ss_pred             HHHhh
Confidence            55553

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.85  E-value=1.6e-06  Score=84.17  Aligned_cols=322  Identities=11%  Similarity=0.106  Sum_probs=196.2

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCc---hhhhhHhhcCCh-HHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          158 HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGL-VPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       158 ~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~---~~~~~i~~~~~i-~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..++..++.+|.. .+.++.+..+..+..+..+.+   .....+...... ..+........+.-....++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            3456778888875 678899999999999987776   322232322221 22333332444555556666666666544


Q ss_pred             CCCCChhhhhchHH--HHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhhCC----C------
Q 009636          233 KPQPPFDQVSPALP--ALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFLMH----P------  297 (530)
Q Consensus       233 ~~~~~~~~~~~~l~--~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~----~------  297 (530)
                      .+. .......++.  -+...+.+. +...+.-++.++..+...+.. ...+.+.  +.++.++.++..    .      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322 3333344444  344445442 344455577777777765443 3334432  235555443321    1      


Q ss_pred             -------CchhHHHHHHHHhHhhcCCchhhHHHhhcCch--HHHHHhhcCCCchhHHHHHHHHHHHHhcCCH----HHHH
Q 009636          298 -------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL--PCLLNLLSGNYKKSIKKEACWTVSNITAGNR----EQIQ  364 (530)
Q Consensus       298 -------~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~  364 (530)
                             ...++..++.+++-++.. +.....+...++.  +.|+.+++......+-+-+..++.|+....+    ..+.
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   234678889999888764 4455555555543  6677778766578899999999999988542    2233


Q ss_pred             -HHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHHhh---------------------cCCC--------HHHHHHHHH
Q 009636          365 -AVIEANIIGPLVALLENA---EFDIKKEAAWAISNAT---------------------SGGT--------HEQIKFLVI  411 (530)
Q Consensus       365 -~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~---------------------~~~~--------~~~~~~l~~  411 (530)
                       .++..++ +.++..|...   |+++....-.....+-                     .-..        .+....|.+
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence             2333445 4455555443   6665544332222111                     0000        111112222


Q ss_pred             c--CChHHHHhccCC----------CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCC
Q 009636          412 Q--GCIKPLCDLLVC----------PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN  479 (530)
Q Consensus       412 ~--~~i~~L~~lL~~----------~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  479 (530)
                      .  .+++.|+.+|++          .|+.++..|+.=|+.+++..+.           .+..+++.||.+.+.+|++|+|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-----------gr~i~~~lg~K~~VM~Lm~h~d  460 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-----------SIDVLDKTGGKADIMELLNHSD  460 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-----------HHHHHHHHSHHHHHHHHTSCSS
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-----------hhHHHHHcCcHHHHHHHhcCCC
Confidence            2  237788888873          4778899999999999988776           3678889999999999999999


Q ss_pred             HHHHHHHHHHHHHhC
Q 009636          480 AEIYEKSVKLLETYW  494 (530)
Q Consensus       480 ~~v~~~a~~il~~~~  494 (530)
                      ++|+..|...++++.
T Consensus       461 ~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          461 SRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998864

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.80  E-value=1.3e-06  Score=92.36  Aligned_cols=271  Identities=14%  Similarity=0.118  Sum_probs=186.4

Q ss_pred             CHHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHh
Q 009636          117 VVPRFVEFLL---REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS--------DDVREQAVWALGN  185 (530)
Q Consensus       117 ~v~~Lv~ll~---~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~i~~~a~~~L~n  185 (530)
                      ++..|-..|.   +++ +.++.-|+.+|+.+..+...  .      ++..|...+.+++        +.++..|+..||-
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            3555666665   344 88999999999999986543  1      3566777776544        6788889999998


Q ss_pred             hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHH
Q 009636          186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDAC  264 (530)
Q Consensus       186 l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~  264 (530)
                      +..++.  +..     ++..|..++. +.+..+...++.+|..+..+..+      ..++..|+..+ .+.+..++..++
T Consensus       464 a~~GS~--~ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSA--NIE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCC--CHH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCC--CHH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence            764432  112     4566777773 34445666888888877554322      23344444433 455788999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchh
Q 009636          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS  343 (530)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  343 (530)
                      .+|+.+..+.++..         +.++..|. +.++.++..++.+++--..+....       ..++.|+..+.++.+..
T Consensus       530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            99998876666433         44445554 467888888888887655544432       23455555554443788


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009636          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL  422 (530)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL  422 (530)
                      +|..|+.+|+.++.++++         .++.++.. +++.++.+|..|+++|+.+..+....        .+++.|..++
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence            999999999999877643         45666664 45679999999999999998753211        2577888889


Q ss_pred             CCCChHHHHHHHHHHHHHHHh
Q 009636          423 VCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       423 ~~~~~~~~~~al~~l~~ll~~  443 (530)
                      ++.+..|+..|+.+|+.+...
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTT
T ss_pred             cCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999987644

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.80  E-value=1e-07  Score=90.45  Aligned_cols=315  Identities=13%  Similarity=0.099  Sum_probs=176.1

Q ss_pred             HhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009636           80 AGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (530)
Q Consensus        80 ~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  157 (530)
                      +.++..  ++.-...++..+..+...+..-+..++  ..+.+.+++++.+.+ ..++.-....+.+++...++..     
T Consensus        32 r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~i-----  103 (355)
T 3tjz_B           32 RVFNETPINPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDVI-----  103 (355)
T ss_dssp             GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCGG-----
T ss_pred             HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHHH-----
Confidence            344433  444444455554444433211111111  235667788999988 8999999888888888533321     


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC
Q 009636          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP  237 (530)
Q Consensus       158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~  237 (530)
                       =++..|.+=+.++++-++-.|+.+|++|....  .-+.     ..+.+-+.+ .+.++.+++.|+.+...|....|   
T Consensus       104 -Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p---  171 (355)
T 3tjz_B          104 -IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF---  171 (355)
T ss_dssp             -GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH---
T ss_pred             -HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH---
Confidence             24678888888999999999999999996443  2112     455566666 88999999999999999987653   


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHhhc
Q 009636          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVT  314 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~~~~~al~~L~nl~~  314 (530)
                       ....+.++.+..++.+.++.++.+++.++..+...+...         +..++..+...   ++-.+...++.++.++.
T Consensus       172 -e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~  241 (355)
T 3tjz_B          172 -DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLE  241 (355)
T ss_dssp             -HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred             -HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence             244678899999999999999999999999998765322         23334434332   34455556666666665


Q ss_pred             CC-chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHH
Q 009636          315 GD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA  393 (530)
Q Consensus       315 ~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  393 (530)
                      .+ +..     ...+++.+..+|++. ++.|..+|++++..+...+..    .. ..++..|..++.++++.+|-.|+..
T Consensus       242 ~d~~~~-----~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~  310 (355)
T 3tjz_B          242 DEDGSR-----DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRT  310 (355)
T ss_dssp             --------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHC
T ss_pred             ccchhh-----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHH
Confidence            44 222     245677888889988 999999999999998552222    11 2345667777888999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          394 ISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       394 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      |..++.. .|+...     ..-..+.+++.++|..+...|+.   .+++-|
T Consensus       311 L~~l~~~-~P~~v~-----~~n~~ie~li~d~n~sI~t~Ait---tllktg  352 (355)
T 3tjz_B          311 LNKVAMK-HPSAVT-----ACNLDLENLVTDANRSIATLAIT---TLLKTG  352 (355)
T ss_dssp             C--------------------------------------------------
T ss_pred             HHHHHHH-CcHHHH-----HHHHHHHHHccCCcHhHHHHHHH---Hhhhcc
Confidence            9998875 333222     24456778888888777665444   445443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.76  E-value=1e-07  Score=86.93  Aligned_cols=187  Identities=14%  Similarity=0.206  Sum_probs=143.9

Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHH
Q 009636          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAV  281 (530)
Q Consensus       203 i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~  281 (530)
                      .+.+...+ .+.+...+..++..|..++...+.........+++.|..++. +.+..++..++.+++.++..-.......
T Consensus        17 ~~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           17 PKDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             CTTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             CHHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            34477777 788999999999999999876322112224577888999995 8899999999999999985432222222


Q ss_pred             HHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CH
Q 009636          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR  360 (530)
Q Consensus       282 ~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~  360 (530)
                      . ..+++.++..+.+.+..++..|..++..++....-       ..+++.+...+.+. ++.+|..++..|+.+... .+
T Consensus        96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNK-NPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred             H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence            2 25889999999999999999999999999874431       23678889999988 999999999999997653 33


Q ss_pred             HH-HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636          361 EQ-IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       361 ~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      .. ....+ ..++|.|..++.+.++++|..|..+++.++..
T Consensus       167 ~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          167 TALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            32 12222 25899999999999999999999999999864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.71  E-value=6.2e-08  Score=88.45  Aligned_cols=186  Identities=13%  Similarity=0.149  Sum_probs=142.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009636          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (530)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  241 (530)
                      +.+...+.+.++..|..++..|..++...+...... ...+++.|...+.++.+..++..++.++..|+..-...-....
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            457888889999999999999999986533221110 1234666677773378899999999999999965432223455


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC-chh-
Q 009636          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DMQ-  319 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~-~~~-  319 (530)
                      ..++|.++..+.+.+..++..+..++..+.....  ..     .+++.+...+.+.++.++..++..|+.+.... +.. 
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            7789999999999999999999999999886543  12     46788899999999999999999999976543 321 


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ....+ ..+++.+..++.+. ++.+|..|..+++.++.
T Consensus       170 ~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            22222 36899999999988 99999999999999875

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.70  E-value=9.3e-07  Score=76.24  Aligned_cols=187  Identities=16%  Similarity=0.177  Sum_probs=149.8

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +.+..|..+|.+.| +.++..|+.+|..+...-+.......-..+++.++.++.+.+..+.-.|+.+|..|..+.|-...
T Consensus        33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            46888999998888 99999999999999985434444444346799999999999999999999999999988775444


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                      .+..  .+.++..++ .+.+.-+...+...+..+--      ......++..+..++.+.|..++..++.++.+++..+.
T Consensus       112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            4333  577888888 68899999999999998821      12246678889999999999999999999999986543


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       276 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~  315 (530)
                      +.  .++ .+++.-+-.+|++.++.++..|+..+-.+.+.
T Consensus       183 D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          183 DS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             SC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            21  011 26677788899999999999999999999875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.56  E-value=5.4e-07  Score=82.14  Aligned_cols=194  Identities=10%  Similarity=0.096  Sum_probs=141.1

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHh-hhCCCchhhhhHhh-cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-CCCh-
Q 009636          163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF-  238 (530)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~n-l~~~~~~~~~~i~~-~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~-  238 (530)
                      .+...+.+.++.-|..++..|.. ++.+.+........ ..++..|.+.+..+.+..++..++.++..|+.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35667788999999999999999 87544332210011 12456666677567788899999999999997654 3333 


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009636          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~  318 (530)
                      .....++|.++..+.+..+.++..+..++..++...+.......-..+++.|+..|.+.++.++..++.+|+.++.....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            56677899999999988899988888888777653211000000013677888999999999999999999999875543


Q ss_pred             ---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       319 ---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                         .....+...++|.+.+++.+. ++.+|..|..+++.++.
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence               222223357999999999998 99999999999999875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.54  E-value=6.1e-07  Score=81.83  Aligned_cols=191  Identities=12%  Similarity=0.100  Sum_probs=140.6

Q ss_pred             HHHhhcCCCchhHHHHHHHHhhh-hccCCCCCC--hhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh-HHHH-
Q 009636          206 LLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPP--FDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ-  279 (530)
Q Consensus       206 Ll~ll~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~-~~~~-  279 (530)
                      +...+ .+.+..-+..++..|.. ++.+.+...  ......++..|.+.+ ...+..++..++.+++.++.+-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            45556 77889999999999999 886543222  222346688888889 67889999999999999985322 1121 


Q ss_pred             HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                      .... -+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            1222 4788999999999999999998888888864422110000113678889999998 9999999999999998743


Q ss_pred             H---HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          360 R---EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       360 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      +   ......+...++|.|..++.+.+..||..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3   334344424799999999999999999999999998875

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.46  E-value=2.8e-08  Score=81.15  Aligned_cols=121  Identities=21%  Similarity=0.186  Sum_probs=92.3

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009636          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~  321 (530)
                      ...++.+..+|.++++.++..++++|+.+...            .++.|+.+|.++++.++..|+++|+++..       
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence            45677888899999999999999888876421            24788899999999999999999999863       


Q ss_pred             HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                          ...++.|...+.++ ++.||..|+|+|+++..  +         ..++.|+.++.+.++.|+..|+++|.++
T Consensus        72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                13478888999888 99999999999999852  2         3578889999988999999999998653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.46  E-value=6.9e-05  Score=72.79  Aligned_cols=320  Identities=11%  Similarity=0.077  Sum_probs=193.9

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCC--CcHHHHHHcCCH-HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009636           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS--PPIEEVIRSGVV-PRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (530)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~g~v-~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~  149 (530)
                      ....+++.|.. ...++....+..+..++...+.  .....+.+..-. ..+.......+++-....+..++..++....
T Consensus        78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~  157 (480)
T 1ho8_A           78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  157 (480)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence            66788898884 5677888888899999877310  122333333222 2233322234425555666666666654332


Q ss_pred             h---hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHHHHHhhc------------
Q 009636          150 E---HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLN------------  211 (530)
Q Consensus       150 ~---~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~Ll~ll~------------  211 (530)
                      .   ....++...   -++..|.. .+...+..++.+|..+..... +|..+.+.+  .+++++..+.            
T Consensus       158 ~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          158 HNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             CCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             ccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            2   222222111   34445544 234556678888888876554 787776543  3566654432            


Q ss_pred             ----CCCchhHHHHHHHHhhhhccCCCCCChhhhhch--HHHHHHhhcC-CChhHHHHHHHHHHHhccCCh----HHHH-
Q 009636          212 ----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ-  279 (530)
Q Consensus       212 ----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~----~~~~-  279 (530)
                          .....+++..++.|++-|+...+........++  ++.|+..++. ..+.+..-++.++.|+.....    .... 
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~  313 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  313 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence                111467788999999999987532222222232  2556666664 468899999999999997652    2222 


Q ss_pred             HHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHh--------h--------------cCCchhhH-HHh---------
Q 009636          280 AVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNI--------V--------------TGDDMQTQ-CVI---------  324 (530)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~---~~~~~~~al~~L~nl--------~--------------~~~~~~~~-~~~---------  324 (530)
                      .++..++ ..++..|...   ++++.... ..|...        +              .-++.+.. .+.         
T Consensus       314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl-~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          314 LLLLGNA-LPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHCH-HHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHccc-hHHHHHHhhCCCCcHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence            2333344 4455555543   33333221 111111        1              11121111 111         


Q ss_pred             -hcCchHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636          325 -EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       325 -~~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                       +..++..|.++|.+         +.++.+...||.=|+.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av  471 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT  471 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence             22468899999973         22688899999999999998888888777889999999999999999999999999


Q ss_pred             HHhhc
Q 009636          395 SNATS  399 (530)
Q Consensus       395 ~nl~~  399 (530)
                      ..+..
T Consensus       472 Qklm~  476 (480)
T 1ho8_A          472 QAIIG  476 (480)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.45  E-value=4.3e-08  Score=80.01  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=92.0

Q ss_pred             hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009636          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (530)
Q Consensus       284 ~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (530)
                      ...++.+..+|.++++.++..|+++|+.+..  +          .++.|..+|.++ ++.+|..|+|+|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--H---
Confidence            3567889999999999999999999987642  1          258899999988 99999999999999853  2   


Q ss_pred             HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009636          364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN  439 (530)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~  439 (530)
                            ..++.|+..+.++++.||..|+++|.++..   +         ..++.|..+++++++.++..+..+|..
T Consensus        73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                  257889999999999999999999999853   2         247788888989999999999988764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.44  E-value=7.9e-05  Score=81.64  Aligned_cols=338  Identities=11%  Similarity=0.072  Sum_probs=187.6

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009636           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID  157 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~  157 (530)
                      ..++++...++.++..+++-   -+...+++.++++.++ .++.  + +.++..|+.||..+....   +  .....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            35667777888999888764   3466777889999999 8885  3 789999999999998722   2  11111110


Q ss_pred             --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHhhhCCC-------chhhhhHhhcCChHHHHHhhcCCC
Q 009636          158 --HGAVPIF--------------VKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQP  214 (530)
Q Consensus       158 --~g~i~~L--------------~~ll~~~~~~i~~~a~~~L~nl~~~~-------~~~~~~i~~~~~i~~Ll~ll~~~~  214 (530)
                        .+.++.+              .......+.+.....+..+..+....       +..+..+.  .++..|+... ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              11111234555555555555443211       11111111  1222344433 456


Q ss_pred             chhHHHHHHHHhhhhccCCC--CCChhhhh----chHHHHHHhhcCCC-------------------hh--HH----HHH
Q 009636          215 KLSMLRNATWTLSNFCRGKP--QPPFDQVS----PALPALAHLIHSND-------------------DE--VL----TDA  263 (530)
Q Consensus       215 ~~~~~~~a~~~L~~L~~~~~--~~~~~~~~----~~l~~L~~ll~~~d-------------------~~--v~----~~a  263 (530)
                      +.++...++...+.|+...-  ........    .+++.++.-+.-++                   .+  ..    .++
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            78888888888777765321  11122223    33444444333221                   00  01    122


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC---
Q 009636          264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG---  338 (530)
Q Consensus       264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---  338 (530)
                      +..+.++..  ++...     -+++.+...+.+  .+|..++.+++++|.++.+.......-.-..+++.|+.++.+   
T Consensus       437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~  509 (1023)
T 4hat_C          437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG  509 (1023)
T ss_dssp             HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence            222222211  11111     123344444443  579999999999999998766443333334677888888764   


Q ss_pred             --CCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH------
Q 009636          339 --NYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK------  407 (530)
Q Consensus       339 --~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~------  407 (530)
                        . ...++..++|+++.++.-   +++...     .++..|++.+...++.++..|++++.+++..+......      
T Consensus       510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~  583 (1023)
T 4hat_C          510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES  583 (1023)
T ss_dssp             HHH-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred             Ccc-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence              2 445677889999998762   333222     35556777777777899999999999999854322210      


Q ss_pred             --HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636          408 --FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       408 --~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~  445 (530)
                        ++  ..++..+...+..-+++-+..+.+++..++...+
T Consensus       584 ~p~~--~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          584 EPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             SCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             chhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence              10  1122333333344456666677777877776543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.36  E-value=3.2e-05  Score=82.85  Aligned_cols=303  Identities=12%  Similarity=0.131  Sum_probs=208.4

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---
Q 009636           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---  148 (530)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~---  148 (530)
                      +..+..+++.+...+......|+..+..++.+.....   .+..+++..|.+.+.+.. ..  +.|+.++..++...   
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~   86 (986)
T 2iw3_A           13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLS   86 (986)
T ss_dssp             HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCC
T ss_pred             HHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCC
Confidence            3455666777776556666778888888876431111   011256778888887655 23  88899999999533   


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      +..-..++  +.++.++..+.+....++..|..++..++..-+...-    ..+++.|+..+...........++.++..
T Consensus        87 ~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~  160 (986)
T 2iw3_A           87 PSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSA  160 (986)
T ss_dssp             TTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             CCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            12222233  6789999999888889999888888877754432211    33688899988555578899999999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHH
Q 009636          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al  306 (530)
                      |+...+.........++|.+...+-+..+++...+..++..+|..  +.+ +.     ..+|.|++.+.+++.  ...++
T Consensus       161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~~-----~~~~~~~~~~~~p~~--~~~~~  232 (986)
T 2iw3_A          161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-IE-----RFIPSLIQCIADPTE--VPETV  232 (986)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-TG-----GGHHHHHHHHHCTTH--HHHHH
T ss_pred             HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-hh-----hhHHHHHHHhcChhh--hHHHH
Confidence            997654333345678899999999899999999888888777632  111 22     678999999988753  45556


Q ss_pred             HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhcC-c
Q 009636          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLENA-E  383 (530)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~-~  383 (530)
                      ..|+.-..-......  .-+=.+|.|..-|... ...+++.++-++.|+|.  .+|.....++. .++|.|-+....- +
T Consensus       233 ~~l~~~tfv~~v~~~--~l~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~  308 (986)
T 2iw3_A          233 HLLGATTFVAEVTPA--TLSIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIAD  308 (986)
T ss_dssp             HHHTTCCCCSCCCHH--HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCS
T ss_pred             HHhhcCeeEeeecch--hHHHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCC
Confidence            666554332221111  1112466777777777 78899999999999998  67776666654 5777777766554 8


Q ss_pred             hhHHHHHHHHHHHhh
Q 009636          384 FDIKKEAAWAISNAT  398 (530)
Q Consensus       384 ~~v~~~a~~aL~nl~  398 (530)
                      |++|..|..|+..|.
T Consensus       309 pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          309 PEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988888774

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.33  E-value=0.0003  Score=77.53  Aligned_cols=344  Identities=10%  Similarity=0.041  Sum_probs=194.2

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC------h
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------S  149 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~------~  149 (530)
                      ..++..+.+++..++..++.++..++...-...+     .++++.|++++++++ +..+..++.+|..++...      +
T Consensus        88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~  161 (960)
T 1wa5_C           88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD  161 (960)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence            3566666666788999999999998875322222     467999999998877 788899999999998732      1


Q ss_pred             hhHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHhhhC-CCchhhhhHhhcCChHHHHHh
Q 009636          150 EHTKVV---IDHGAVPIFVK-------LLYSPSD---------DVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQ  209 (530)
Q Consensus       150 ~~~~~~---~~~g~i~~L~~-------ll~~~~~---------~i~~~a~~~L~nl~~-~~~~~~~~i~~~~~i~~Ll~l  209 (530)
                      +.+..+   +. ...+.+++       .+..+..         .+...++.++.++.. +.+..-...+ ...++.+..+
T Consensus       162 ~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~  239 (960)
T 1wa5_C          162 ELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKY  239 (960)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHH
Confidence            222211   11 12333333       2443211         223346666666553 2232111000 1123334444


Q ss_pred             hcCC-----Cc---------hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-----CCChhHHHHHHHHHHHh
Q 009636          210 LNGQ-----PK---------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-----SNDDEVLTDACWALSYL  270 (530)
Q Consensus       210 l~~~-----~~---------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~l  270 (530)
                      +...     .+         ..++..++.++..++...+..-......+++.....+.     ..++.+...++..+..+
T Consensus       240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~  319 (960)
T 1wa5_C          240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV  319 (960)
T ss_dssp             HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred             HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence            4211     11         24567778788777654321111223445555555554     23567788888888777


Q ss_pred             ccCChHHHH-----HHHHhCcH-HHHHHhhC-----------------------CCCchhHHHHHHHHhHhhcCCchhhH
Q 009636          271 SDGTNDKIQ-----AVIEAGVF-PRLAEFLM-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       271 ~~~~~~~~~-----~~~~~~~l-~~L~~lL~-----------------------~~~~~~~~~al~~L~nl~~~~~~~~~  321 (530)
                      +..... ..     ..+. .++ ..++..+.                       ...+..+..|..+|..++......  
T Consensus       320 ~~~~~~-~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~--  395 (960)
T 1wa5_C          320 TRIPKY-FEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL--  395 (960)
T ss_dssp             HTSHHH-HGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred             hCcHhH-HHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence            654221 11     0111 122 22223321                       112246777778888777644321  


Q ss_pred             HHhhcCchHHHHHhhc------CCCchhHHHHHHHHHHHHhcC---CH---H------HHHHHHHhCcHHHHHHHHhcC-
Q 009636          322 CVIEYQALPCLLNLLS------GNYKKSIKKEACWTVSNITAG---NR---E------QIQAVIEANIIGPLVALLENA-  382 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~---~~---~------~~~~l~~~~~i~~L~~ll~~~-  382 (530)
                       ++ ..+++.+...+.      +. +...|+.|..+++.++.+   ..   .      ....++..    .++..+.+. 
T Consensus       396 -v~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~----~v~p~l~~~~  468 (960)
T 1wa5_C          396 -VT-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK----EIAPDLTSNN  468 (960)
T ss_dssp             -HH-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH----HTHHHHHCSS
T ss_pred             -HH-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH----HhHHHhcCCC
Confidence             11 123445555554      34 667888999999999753   11   0      22222221    233334555 


Q ss_pred             --chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          383 --EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       383 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                        ++.+|..|+|+++.++..-.++...     .+++.++..|.++++.++..|+.+|.+++..
T Consensus       469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          469 IPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence              8899999999999998865444333     3577888888888899999999999999874

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.32  E-value=0.00014  Score=80.36  Aligned_cols=336  Identities=10%  Similarity=-0.025  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc---------------CCCCHHHHHHHHHHHHHHhcCCh-hh
Q 009636           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---------------REDYPQLQFEAAWALTNIASGTS-EH  151 (530)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~---------------~~~~~~i~~~a~~~L~~l~~~~~-~~  151 (530)
                      .++..++.++..++.....+..   ....+++.+.. |.               ..+.++++..|+.++..+..... ..
T Consensus       204 ~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  279 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN  279 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred             hHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence            6778888888876652001211   23445666666 41               11237899999999999997432 11


Q ss_pred             HHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHhhhCCCch-hh-----------hhHhhcCChHHHHHh
Q 009636          152 TKVVIDHGAVPIFVKL-------LYSPS---DDVREQAVWALGNIAGDSPR-CR-----------DLVLSQGGLVPLLAQ  209 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~l-------l~~~~---~~i~~~a~~~L~nl~~~~~~-~~-----------~~i~~~~~i~~Ll~l  209 (530)
                      ....+. .+++.++.+       +...+   .+.....+..+..++...+. +.           ..+  ...++.++..
T Consensus       280 ~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~  356 (971)
T 2x1g_F          280 YPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHC  356 (971)
T ss_dssp             CHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHH
Confidence            111111 123333322       23334   25555566666666532221 11           011  1234444444


Q ss_pred             hcC----CCchhHHHHHHHHhhhhccCC--------CCCCh----hhhhchHHHHHHhhcCCCh---------------h
Q 009636          210 LNG----QPKLSMLRNATWTLSNFCRGK--------PQPPF----DQVSPALPALAHLIHSNDD---------------E  258 (530)
Q Consensus       210 l~~----~~~~~~~~~a~~~L~~L~~~~--------~~~~~----~~~~~~l~~L~~ll~~~d~---------------~  258 (530)
                      ...    ..+..+...+++++..++...        .....    .....+++.++..+..++.               .
T Consensus       357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~  436 (971)
T 2x1g_F          357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC  436 (971)
T ss_dssp             HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred             HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence            322    347888999999998887521        11111    1223444544444432211               2


Q ss_pred             HHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCC-----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009636          259 VLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-----~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L  332 (530)
                      .+..+..++..++.... .....     +++.+...+.+     .+|..++.++.+++.++.+........+. .+++.+
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l  510 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVL  510 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHH
Confidence            34445555555554332 22221     22333333332     68889999999999999876543211111 133322


Q ss_pred             HHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009636          333 LNLLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI  411 (530)
Q Consensus       333 ~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  411 (530)
                      ..+.. +. ++.+|..++|+++.++..-......+  ..+++.|+..++   +.|+..|++++.+++.........++  
T Consensus       511 ~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~--  582 (971)
T 2x1g_F          511 AEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA--  582 (971)
T ss_dssp             HHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH--
T ss_pred             HhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH--
Confidence            22221 23 78999999999999986211111111  135666777673   78999999999999976543332222  


Q ss_pred             cCChHHHHhccCC--CChHHHHHHHHHHHHHHHhh
Q 009636          412 QGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       412 ~~~i~~L~~lL~~--~~~~~~~~al~~l~~ll~~~  444 (530)
                      ..++..|..++..  -+.+.+..+++++..++...
T Consensus       583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            2456677777766  35678888999999988643

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.19  E-value=0.00014  Score=80.30  Aligned_cols=340  Identities=14%  Similarity=0.100  Sum_probs=189.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCC
Q 009636          126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (530)
Q Consensus       126 ~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~  202 (530)
                      .+.+ ...+..++++++.++.+..+..     ...++.++..+   ..+++.++..++|+++.++..-....+. + ..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l-~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-I-NSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-H-TTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-H-HHH
Confidence            3444 7888999999999998643311     12334444433   3357889999999999987432111111 2 247


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 009636          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ  279 (530)
Q Consensus       203 i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~-~~~~  279 (530)
                      ++.++..+ .+  +.++..|++++.++|...+..-......++..+..++...  +...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78888877 33  7899999999999997643222233456666677777653  56788888889988875442 3333


Q ss_pred             HHHHhCcHHHHHHhh----CCC-CchhHH---HHHHHHhHhhcCCch---------------------hhHHHhhcCchH
Q 009636          280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCVIEYQALP  330 (530)
Q Consensus       280 ~~~~~~~l~~L~~lL----~~~-~~~~~~---~al~~L~nl~~~~~~---------------------~~~~~~~~~~l~  330 (530)
                      ..++ .+++.+...+    ... ++..+.   ..+.+|+.++..-..                     ..-..+...+++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            3332 3444444433    222 333333   445555555432110                     001112334566


Q ss_pred             HHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH----hcC-chhHHHHHHHHHHHhhc--CCC
Q 009636          331 CLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL----ENA-EFDIKKEAAWAISNATS--GGT  402 (530)
Q Consensus       331 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~-~~~v~~~a~~aL~nl~~--~~~  402 (530)
                      .+..++... .+..+.+.+|.++..++....+..     ..+++.++..+    ... .+    ..++.+..++.  +..
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~  757 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE  757 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence            666666431 156889999999988764211111     12344444332    221 12    23444444433  222


Q ss_pred             H---HHHHHHHHcCChHHHHhccC---CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009636          403 H---EQIKFLVIQGCIKPLCDLLV---CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT  476 (530)
Q Consensus       403 ~---~~~~~l~~~~~i~~L~~lL~---~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~  476 (530)
                      .   ..+..+.+ .++..+..++.   ..+++++......+..++...+..-..    ......     ..++.+.....
T Consensus       758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~----~~~~~~-----~i~~~~~~~l~  827 (963)
T 2x19_B          758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC----ERLDVK-----AVFQCAVLALK  827 (963)
T ss_dssp             TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC----TTSCHH-----HHHHHHHHHTT
T ss_pred             cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC----CcccHH-----HHHHHHHHHcC
Confidence            1   12222111 12333333332   246899999999999999876643210    000011     12344444557


Q ss_pred             CCCHHHHHHHHHHHHHhCCC
Q 009636          477 HDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       477 ~~~~~v~~~a~~il~~~~~~  496 (530)
                      +++.++...+..++.+++..
T Consensus       828 ~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          828 FPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            89999999999999987753

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.18  E-value=0.00087  Score=74.54  Aligned_cols=342  Identities=11%  Similarity=0.084  Sum_probs=181.9

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHhcCC--hh---hHHHHHh-
Q 009636           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID-  157 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~-ll~~~~~~~i~~~a~~~L~~l~~~~--~~---~~~~~~~-  157 (530)
                      .++.++..++.++..+++.-   +...+.+..+++.+.+ ++.  + +.++..|+.||..+....  +.   ....+.. 
T Consensus       207 ~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            45678888899988877542   2344556677777773 443  4 899999999999998742  21   1111110 


Q ss_pred             -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHhhhC-------CCchhhhhHhhcCChHHHHHhhcCCCc
Q 009636          158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (530)
Q Consensus       158 -~g~i~~L~~-ll-------------~~~~~~i~~~a~~~L~nl~~-------~~~~~~~~i~~~~~i~~Ll~ll~~~~~  215 (530)
                       .+++..+.. ++             ...+.+.....+..+..+..       ..+..+..+  ..+++.++... ...+
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence             122222221 11             11233444444444433321       111122221  12455555555 4557


Q ss_pred             hhHHHHHHHHhhhhcc----CCCCCC--hhhhhchHHHHHHhhcCC-------------------Ch---hHHHHHHHHH
Q 009636          216 LSMLRNATWTLSNFCR----GKPQPP--FDQVSPALPALAHLIHSN-------------------DD---EVLTDACWAL  267 (530)
Q Consensus       216 ~~~~~~a~~~L~~L~~----~~~~~~--~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~l  267 (530)
                      .++...++..+..++.    ......  ......+++.++..+.-+                   |.   .....+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            7888888888888877    321111  123344555555544321                   00   1122233444


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhC--CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-----CC
Q 009636          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-----NY  340 (530)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~  340 (530)
                      ..++.......   + .-+.+.+-..+.  ..+|..+..++++++.++.+.........-..+++.+..+...     + 
T Consensus       438 ~~l~~~~~~~~---l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-  512 (1049)
T 3m1i_C          438 VYLTHLNVIDT---E-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-  512 (1049)
T ss_dssp             HHHHHHCHHHH---H-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred             HHHHccCHHHH---H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence            44442222111   1 112344444454  3578899999999999986544332212122345555554332     2 


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH--------HHHHHc
Q 009636          341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI--------KFLVIQ  412 (530)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~~~  412 (530)
                      ++.++..++|+++.++..-..+-..+  ..+++.++..+.+.++.|+..|+++|.+++..+.....        .++  .
T Consensus       513 ~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~  588 (1049)
T 3m1i_C          513 KAVVASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--Q  588 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--H
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--H
Confidence            45566679999998875211111122  23677788888888899999999999999985432211        111  1


Q ss_pred             CChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       413 ~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      .++..+..++..-+.+-.....+++..++...
T Consensus       589 ~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence            23333444444445554556677777776543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.15  E-value=0.00012  Score=80.74  Aligned_cols=258  Identities=10%  Similarity=0.088  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHhhhCCCchhhhhHh---h-cC
Q 009636          132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCRDLVL---S-QG  201 (530)
Q Consensus       132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~------~~~~~i~~~a~~~L~nl~~~~~~~~~~i~---~-~~  201 (530)
                      ..+..|..+|..++...++   .++. .+++.+.+.+.      +.+...++.|+.+++.++.....+.....   . ..
T Consensus       376 s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            4677788888888874332   1211 12344444454      46678999999999999853211110000   0 01


Q ss_pred             ChHH----HHHhhcCC--CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC-
Q 009636          202 GLVP----LLAQLNGQ--PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT-  274 (530)
Q Consensus       202 ~i~~----Ll~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~-  274 (530)
                      ..+.    ++..+.+.  .++-++..++|+++.++..-   .......+++.++..+.+++..|+..|++++.+++... 
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            1121    22333222  27889999999999999863   23457788899999998888999999999999988641 


Q ss_pred             ----------hHHHHHHHHhCcHHHHHHhhCCCC-----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh---
Q 009636          275 ----------NDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL---  336 (530)
Q Consensus       275 ----------~~~~~~~~~~~~l~~L~~lL~~~~-----~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL---  336 (530)
                                .+.....+. .+++.|+.++....     ......++.+++.++....+...... ..+++.|...+   
T Consensus       529 ~~~~~~~~~~~~~l~p~l~-~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHH-HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH
Confidence                      111221222 46667777776641     11234566666665432211111111 12333443333   


Q ss_pred             -cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          337 -SGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       337 -~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                       +++.++.++..++.+|+.++.. .++....+ ...++|.+..++.....+....+...+..+..
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence             3343667777788888888875 44433333 34678888888887666777777777777664

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.15  E-value=7.3e-05  Score=68.97  Aligned_cols=186  Identities=15%  Similarity=0.093  Sum_probs=138.5

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636          246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~  325 (530)
                      ..++.-|.+.+...+..++..|..+...+.+....++..+++..|+......+...+..++++++++..+.+.....+-.
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            34556666788888899999999866566778888999999999999999999999999999999999754433222335


Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------h--CcHHHHHHHHh---cCchhHHHHHHH
Q 009636          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------A--NIIGPLVALLE---NAEFDIKKEAAW  392 (530)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~~  392 (530)
                      ..++..+..++.+. ...|.+.|..+|..++..++.....+.+        .  ..+..|+.+|.   +.|.+++..|..
T Consensus       201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            67899999999976 8999999999999998765433333322        1  23778999997   678999999988


Q ss_pred             HHHHhhcCCC-HH----HHHHHHHcCChHHHHhccCCC--ChHHHHH
Q 009636          393 AISNATSGGT-HE----QIKFLVIQGCIKPLCDLLVCP--DPRIVTV  432 (530)
Q Consensus       393 aL~nl~~~~~-~~----~~~~l~~~~~i~~L~~lL~~~--~~~~~~~  432 (530)
                      .|..+..+.+ .+    ....+-+.|+-..+...++..  +++++..
T Consensus       280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            8877776544 23    333444556556677767654  6565553

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.15  E-value=0.00024  Score=76.24  Aligned_cols=296  Identities=16%  Similarity=0.159  Sum_probs=196.3

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC--CCChhhh
Q 009636          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQV  241 (530)
Q Consensus       164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~  241 (530)
                      +.+.+...+..-+..++..+.++.......+  ....+++..+.+.+ .+....  +.|+.++..||....  .......
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGI-KDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHH-TSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHH-hccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            4444444333334556666777654332221  12235677777777 443333  999999999997652  2334455


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchh
Q 009636          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~~~~~  319 (530)
                      -+++|.++..+.+.+..|+..+-.++..+... ++...     ..+++.|+..|.+. .|..+..|+.++..++...+.+
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~  168 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ  168 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence            57788888888888888888877777666533 22222     25678888888655 7999999999999999765544


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      ...- -..++|.+...+.+. .++|++.|..++..+|.  ++.+.      ...+|.|++.+..++ + .-++...|+.-
T Consensus       169 ~~~~-~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~-~-~~~~~~~l~~~  238 (986)
T 2iw3_A          169 VALR-MPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPT-E-VPETVHLLGAT  238 (986)
T ss_dssp             HHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTT-H-HHHHHHHHTTC
T ss_pred             HHHh-ccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChh-h-hHHHHHHhhcC
Confidence            3222 246889999999988 99999999999999987  44332      357999999998774 2 33445555444


Q ss_pred             hcCC--CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-
Q 009636          398 TSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-  474 (530)
Q Consensus       398 ~~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-  474 (530)
                      +.-.  +......     +++.|.+-|......+...+.-.+.|+++.-+.-.     ...+|...+     +..++.. 
T Consensus       239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-----~~~~f~~~l-----~p~~~~~~  303 (986)
T 2iw3_A          239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-----VIAPFLGKL-----LPGLKSNF  303 (986)
T ss_dssp             CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-----HHHHHHTTT-----HHHHHHHT
T ss_pred             eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-----HHhhhhhhh-----hhHHHHHh
Confidence            3322  1111111     36677778888888888999999999998765422     123344333     4566553 


Q ss_pred             hcCCCHHHHHHHHHHHHHhC
Q 009636          475 QTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       475 ~~~~~~~v~~~a~~il~~~~  494 (530)
                      ....+|++++.|...++...
T Consensus       304 ~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          304 ATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             TTCCSHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHH
Confidence            56789998888877777664

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.12  E-value=9.6e-05  Score=68.19  Aligned_cols=189  Identities=12%  Similarity=0.123  Sum_probs=142.2

Q ss_pred             HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-
Q 009636          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-  367 (530)
Q Consensus       289 ~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-  367 (530)
                      .++..|.+.+...+..++.-|..+...+......++..+++..|+.+.... +...+..+..++.++..+ .....-++ 
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs  199 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence            344555567778899999999997766788889999999999999999998 999999999999999875 34444444 


Q ss_pred             HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH--------HcC--ChHHHHhccC---CCChHHHHHHH
Q 009636          368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV--------IQG--CIKPLCDLLV---CPDPRIVTVCL  434 (530)
Q Consensus       368 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~~--~i~~L~~lL~---~~~~~~~~~al  434 (530)
                      ...+|..+..++.+.+..|.+.|+..|..++.... .....+.        ..|  .+..|+.+|.   +.|.+++..++
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            45688889999988889999999999999987542 1111111        112  3778889997   78999999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHH
Q 009636          435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEK  485 (530)
Q Consensus       435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~  485 (530)
                      ..|..++...+....     -..+...+++.|.-..+...+...  ++++.++
T Consensus       279 tLIN~lL~~apd~d~-----~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDS-----FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHH-----HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhH-----HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            999999887653221     223677788888777788866654  6666543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.10  E-value=0.00013  Score=80.58  Aligned_cols=300  Identities=13%  Similarity=0.127  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---C--CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHH
Q 009636          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---Y--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP  205 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~  205 (530)
                      ...++.|+++++.++.+......     ..++.++.++   .  +.++.++..++|+++.++..-....+.+.  .+++.
T Consensus       478 w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~  550 (971)
T 2x1g_F          478 WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL  550 (971)
T ss_dssp             CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence            57789999999999886543221     2233333332   3  24789999999999998842111111111  24555


Q ss_pred             HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCC-hHHHHHHH
Q 009636          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGT-NDKIQAVI  282 (530)
Q Consensus       206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~-~~~~~~~~  282 (530)
                      ++..+ +   +.++..|++++.++|+.....-......++..+..++...  +...+..++.+++.++... .+.....+
T Consensus       551 l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~  626 (971)
T 2x1g_F          551 LVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL  626 (971)
T ss_dssp             HHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             HHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            66656 2   6789999999999997642221233455666666777763  5778888888888887542 12222222


Q ss_pred             H---hCcHHHHHHhhCCC--CchhHHH---HHHHHhHhhcCCch------------hhHHHhhcCchHHHHHhhcCC-Cc
Q 009636          283 E---AGVFPRLAEFLMHP--SPSVLIP---ALRTVGNIVTGDDM------------QTQCVIEYQALPCLLNLLSGN-YK  341 (530)
Q Consensus       283 ~---~~~l~~L~~lL~~~--~~~~~~~---al~~L~nl~~~~~~------------~~~~~~~~~~l~~L~~lL~~~-~~  341 (530)
                      .   .-++..+..++...  +...+..   ++..|+.+...-..            ..-..+-..+++.+..++... .+
T Consensus       627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~  706 (971)
T 2x1g_F          627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEE  706 (971)
T ss_dssp             HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcccc
Confidence            2   12333333444433  2222333   34444444321100            000122346788888887542 26


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC-C-HH---HHHHHHHcCChH
Q 009636          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG-T-HE---QIKFLVIQGCIK  416 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-~-~~---~~~~l~~~~~i~  416 (530)
                      ..+.+.++++++.++..-......++. .+++.|+..+.....   ..+++.++.++..- . +.   ....+.. .++.
T Consensus       707 ~~v~e~~~~~~~~~~~~~~~~~~p~l~-~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~-~~~~  781 (971)
T 2x1g_F          707 IDVLEAACSAMKHAITNLRSSFQPMLQ-DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLR-EFIQ  781 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--CTHHH-HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccccHH-HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHH-HHHH
Confidence            689999999999987521111111111 133334333333221   23677777776522 2 11   1222222 1233


Q ss_pred             HHHhccCC-------CChHHHHHHHHHHHHHHHhhhh
Q 009636          417 PLCDLLVC-------PDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       417 ~L~~lL~~-------~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      .+..++..       .+++++......+..++...+.
T Consensus       782 ~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~  818 (971)
T 2x1g_F          782 HSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ  818 (971)
T ss_dssp             HHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG
T ss_pred             HHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH
Confidence            33344433       3778888888888888877664

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.02  E-value=3.1e-05  Score=84.73  Aligned_cols=304  Identities=11%  Similarity=0.024  Sum_probs=167.4

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCCh
Q 009636           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAV  161 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i  161 (530)
                      +.++.+...++.++..+++-   -+...++..++++.+..+|..   +.++..|+.||..+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            46788889999999999864   346667777889999998864   789999999999998754  3333333322011


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHhhhC------CCc-----hhhhh--HhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009636          162 PIFVKLLY--SPSDDVREQAVWALGNIAG------DSP-----RCRDL--VLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (530)
Q Consensus       162 ~~L~~ll~--~~~~~i~~~a~~~L~nl~~------~~~-----~~~~~--i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L  226 (530)
                      ...+..+.  ..+.++.+..+..+..++.      ..+     +.+..  -.-.+.++.++... .+++.++...++.++
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            11122222  3566665544444433321      111     00000  01124677777877 556667777776666


Q ss_pred             hhhccCC---CC--CCh----hhhhchHHHHHHhhcCC-----Ch-----------hHHHHHHHHHHHhccCChHHHHH-
Q 009636          227 SNFCRGK---PQ--PPF----DQVSPALPALAHLIHSN-----DD-----------EVLTDACWALSYLSDGTNDKIQA-  280 (530)
Q Consensus       227 ~~L~~~~---~~--~~~----~~~~~~l~~L~~ll~~~-----d~-----------~v~~~a~~~l~~l~~~~~~~~~~-  280 (530)
                      ..+....   +.  ...    .....+++.++.-+.-+     +.           +.|......+..++.-.++..-. 
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            6655321   11  111    12233444444434321     01           23333331111221112111111 


Q ss_pred             HHHhCcHHHHHHhhC---CCCchhHHHHHHHHhHhhcCCchhhHHH-----hhcCchHHHHHhhc-----CCCchhHHHH
Q 009636          281 VIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKKE  347 (530)
Q Consensus       281 ~~~~~~l~~L~~lL~---~~~~~~~~~al~~L~nl~~~~~~~~~~~-----~~~~~l~~L~~lL~-----~~~~~~v~~~  347 (530)
                      +.+ -+.+.+...+.   +.+|..++.++.+++.++.+.......+     .-..+++.+..++.     .+ ++.|+..
T Consensus       437 ~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~  514 (980)
T 3ibv_A          437 MYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL  514 (980)
T ss_dssp             HHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence            110 11122223342   3468899999999999998755322111     01124455666654     45 7899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc------CchhHHHHHHHHHHHhhcCCC
Q 009636          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN------AEFDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~nl~~~~~  402 (530)
                      ++|+++..+..-..      +...++.++..+-+      ++.+|+..|+.++.+++..+.
T Consensus       515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            99999999873211      12355555555544      467899999999999988553

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.82  E-value=0.022  Score=63.30  Aligned_cols=315  Identities=10%  Similarity=0.124  Sum_probs=170.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCC--ch-
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDS--PR-  192 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~--~~-  192 (530)
                      +++.+..++....++.++..++.++.+....-+  ...+....+++.+.. ++  .++.++..|+.+|..+....  +. 
T Consensus       195 i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~  270 (1049)
T 3m1i_C          195 IFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDN  270 (1049)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcch
Confidence            344455566544447899999999998776333  223555667777663 44  37889999999999998552  21 


Q ss_pred             --hhhhHhh--cCChHHHHH-h----------h--cCCCchhHHHHHHHHhhhhccCC------CCCChhhhhchHHHHH
Q 009636          193 --CRDLVLS--QGGLVPLLA-Q----------L--NGQPKLSMLRNATWTLSNFCRGK------PQPPFDQVSPALPALA  249 (530)
Q Consensus       193 --~~~~i~~--~~~i~~Ll~-l----------l--~~~~~~~~~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~  249 (530)
                        ....+..  .+.+..+.. +          +  ..+.+.+.....+..+..+....      +.........+++.++
T Consensus       271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll  350 (1049)
T 3m1i_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence              1111111  111221111 1          1  02234555555555554433210      1111222345677777


Q ss_pred             HhhcCCChhHHHHHHHHHHHhcc----C--ChHHHHHHHHhCcHHHHHHhhCCCCc----------------------hh
Q 009636          250 HLIHSNDDEVLTDACWALSYLSD----G--TNDKIQAVIEAGVFPRLAEFLMHPSP----------------------SV  301 (530)
Q Consensus       250 ~ll~~~d~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~~  301 (530)
                      .+...++.++...++..+..+++    .  .......++. .+++.++..+..++.                      ..
T Consensus       351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~  429 (1049)
T 3m1i_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1049)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence            77777788887777766666554    1  1111121222 344555555432210                      11


Q ss_pred             HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009636          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE  380 (530)
Q Consensus       302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  380 (530)
                      +..+..+|..++.......    -.-+.+.+...+.. ..+...+..++|+++.++.+.......-.-..+++.|..+..
T Consensus       430 ~~~~~~~L~~l~~~~~~~~----l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~  505 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLNVIDT----EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV  505 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHH----HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence            2234445555542222111    11223444445543 226678999999999998743222111111124555555432


Q ss_pred             -----cCchhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636          381 -----NAEFDIKKEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       381 -----~~~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~  445 (530)
                           .+.+.++..++|+++.++..  ..+++..     .+++.|+..+.++++.++..|+.++.+++....
T Consensus       506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                 13455666789999977642  1233322     356778888888889999999999999998654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.78  E-value=0.0017  Score=71.69  Aligned_cols=333  Identities=13%  Similarity=0.078  Sum_probs=184.6

Q ss_pred             cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009636           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (530)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g  159 (530)
                      .+.++..+..++.++..++.+-.. ..     ...++.++..+   .+++ +.++..++|+++.++..-.... ... ..
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~-~~-----~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~-~~l-~~  529 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDV-NY-----SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHP-VMI-NS  529 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCS-SC-----CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCH-HHH-TT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCc-hh-----hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCH-HHH-HH
Confidence            456778888889999988755321 11     12233344333   2234 8899999999999886322222 222 47


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCC-C
Q 009636          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKP-Q  235 (530)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~-~  235 (530)
                      +++.++..+.+  +.++..|+++|.+++.+.   +..+..  ..++..+..++.. ..+...+..+..++..++...+ .
T Consensus       530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~---~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~  604 (963)
T 2x19_B          530 VLPLVLHALGN--PELSVSSVSTLKKICREC---KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE  604 (963)
T ss_dssp             THHHHHHHTTC--GGGHHHHHHHHHHHHHHT---GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHhCC--chHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence            88999998854  789999999999999543   222221  1133334444433 2356778888888888876543 1


Q ss_pred             CChhhhhchHHHHHHhhc----CC-ChhHHH---HHHHHHHHhccC----Ch------------------HHHHHHHHhC
Q 009636          236 PPFDQVSPALPALAHLIH----SN-DDEVLT---DACWALSYLSDG----TN------------------DKIQAVIEAG  285 (530)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~----~~-d~~v~~---~a~~~l~~l~~~----~~------------------~~~~~~~~~~  285 (530)
                      ........+++.+...+.    .. +++...   ..+.+++.+...    ..                  .....+ ...
T Consensus       605 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  683 (963)
T 2x19_B          605 EILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-LQQ  683 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-HHH
Confidence            122233445544444332    22 443333   334444333211    00                  111112 224


Q ss_pred             cHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh----cCCCchhHHHHHHHHHHHHhc--
Q 009636          286 VFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL----SGNYKKSIKKEACWTVSNITA--  357 (530)
Q Consensus       286 ~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~--  357 (530)
                      +++.+..++..  .+..+.+.++.+++.++........     ..++.++..+    .....+    ..+++++.++.  
T Consensus       684 ~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f  754 (963)
T 2x19_B          684 VFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIF  754 (963)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHh
Confidence            55555555532  4567888999999888653322211     2234333332    221122    34455555544  


Q ss_pred             CCH----HHHHHHHHhCcHHHHHHHHhc---CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC-----ChHHHHhccCCC
Q 009636          358 GNR----EQIQAVIEANIIGPLVALLEN---AEFDIKKEAAWAISNATSGGTHEQIKFLVIQG-----CIKPLCDLLVCP  425 (530)
Q Consensus       358 ~~~----~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~-----~i~~L~~lL~~~  425 (530)
                      +..    ..+..+++ .++..++.++..   .+++++......+..++......    +....     ++..+...++..
T Consensus       755 ~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~----~~~~~~~~~~i~~~~~~~l~~~  829 (963)
T 2x19_B          755 AHEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL----FLCERLDVKAVFQCAVLALKFP  829 (963)
T ss_dssp             TTCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG----GGCTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH----HcCCcccHHHHHHHHHHHcCCC
Confidence            221    22222222 234455555542   35899999999999888643211    11111     345566677889


Q ss_pred             ChHHHHHHHHHHHHHHHhh
Q 009636          426 DPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       426 ~~~~~~~al~~l~~ll~~~  444 (530)
                      ++.+...+++.+..++...
T Consensus       830 ~~~~~~~~l~~l~~l~~~~  848 (963)
T 2x19_B          830 EAPTVKASCGFFTELLPRC  848 (963)
T ss_dssp             CHHHHHHHHHHHHHHGGGT
T ss_pred             CHHHHHHHHHHHHHHHhcC
Confidence            9999999999999998653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.78  E-value=0.0027  Score=69.58  Aligned_cols=390  Identities=8%  Similarity=0.050  Sum_probs=203.0

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009636           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~  160 (530)
                      .++..+..++.+++.++.+. .+....-.-..+++.|+.++...    ....++..++|+++..+.--......+  ..+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~v  541 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV  541 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHH
Confidence            57889999999999887542 22212222234678888887631    113455567799988766221111111  134


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh------cCChHHHHHhhc---CCCchhHHHHHHHHhhhhcc
Q 009636          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..|+..+..+++.++..|+|+|.+||.+   ++..+..      ...++.++..+.   ..-+......+..+++.+..
T Consensus       542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            66777777777899999999999999965   3333321      113344433331   33456666788888888888


Q ss_pred             CCCCCC--hhhhhchHHHHH----Hhhc--CC------C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009636          232 GKPQPP--FDQVSPALPALA----HLIH--SN------D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (530)
Q Consensus       232 ~~~~~~--~~~~~~~l~~L~----~ll~--~~------d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL  294 (530)
                      ..+...  ......+++.+.    .+..  +.      |   .......+.++..++..-......... .+.+.++.+.
T Consensus       619 ~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~y  697 (1023)
T 4hat_C          619 EERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNMLQLY  697 (1023)
T ss_dssp             TCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHH
T ss_pred             hCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHH
Confidence            754322  112222222222    2221  01      1   122333444444443221110000010 1122222221


Q ss_pred             CC------------C-----Cc------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----C----Cchh
Q 009636          295 MH------------P-----SP------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----N----YKKS  343 (530)
Q Consensus       295 ~~------------~-----~~------~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~----~~~~  343 (530)
                      +.            +     .+      .++..+++.+.......+..  ..+...+++.|+..+-.    .    .++.
T Consensus       698 ~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~--~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~  775 (1023)
T 4hat_C          698 RAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL--DDVVKVLVEPLLNAVLEDYMNNVPDARDAE  775 (1023)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH--HHHHHHTHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred             HHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHhHHHHHHHHHHHHHhCChhhccHH
Confidence            10            0     11      12223333333333222211  12223445555444321    1    1344


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCCH-------HHHHHHHHcC
Q 009636          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAISNATSGGTH-------EQIKFLVIQG  413 (530)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~~-------~~~~~l~~~~  413 (530)
                      +-.-..-++..+.....+.+..+++ .++..=+.++..+   .|+.|..-...+.++...+..       +..+.     
T Consensus       776 vL~l~s~iv~~~~~~~~~~~~~il~-~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~-----  849 (1023)
T 4hat_C          776 VLNCMTTVVEKVGHMIPQGVILILQ-SVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL-----  849 (1023)
T ss_dssp             HHHHHHHHHHHHGGGCHHHHHHHHH-HHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH-----
Confidence            4444444444554433444444444 3555566667653   588888888888877665422       22222     


Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHH----HHHhcCCCHHHHHHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI----ESLQTHDNAEIYEKSVKL  489 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l----~~l~~~~~~~v~~~a~~i  489 (530)
                      +++.++-.++..+.++...++..+..++.......      ...+...|-..-+.+.+    ..+.+..+.-..+.-..+
T Consensus       850 ~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~  923 (1023)
T 4hat_C          850 FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALL  923 (1023)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHH
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHH
Confidence            45666667789999999999999999987665321      11234444444444443    345677777777777788


Q ss_pred             HHHhCC
Q 009636          490 LETYWL  495 (530)
Q Consensus       490 l~~~~~  495 (530)
                      +...|.
T Consensus       924 l~~l~~  929 (1023)
T 4hat_C          924 LMKLIS  929 (1023)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877665

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.74  E-value=0.00022  Score=69.73  Aligned_cols=257  Identities=13%  Similarity=0.069  Sum_probs=164.4

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      ++....|+..|-++.+++|.-|+-.||.++...+..       .|..       ...+ .   ..|+++++-++-+.   
T Consensus       173 fqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDR---  231 (800)
T 3oc3_A          173 LDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDK---  231 (800)
T ss_dssp             GGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC---
T ss_pred             HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhcc---
Confidence            446788889999999999999999999998764211       1111       2222 2   45556666555421   


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                                  +-.+.++ .-..+|+.|+.+|+.+ ..-+..      ..++..++..+ .....+++..++-.|.++.
T Consensus       232 ------------FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~  291 (800)
T 3oc3_A          232 ------------FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLK  291 (800)
T ss_dssp             ------------CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTG
T ss_pred             ------------ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHH
Confidence                        1112222 1245899999999988 554432      33455555545 5667888888888888881


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC--chhHHHHHHH
Q 009636          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALRT  308 (530)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~~~~al~~  308 (530)
                      .--.     ...++++.++..|.+.|++|+..|+.+|..++ . ++...     .++..+...|.+-+  ..........
T Consensus       292 DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdL  359 (800)
T 3oc3_A          292 EFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSL  359 (800)
T ss_dssp             GGCC-----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHH
T ss_pred             HHHH-----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHH
Confidence            1111     16778888999999999999999999999888 2 22233     33445555554422  2233445566


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      |+.++......   -.+...+|.|.+.+.+. -..||..+..+|..+.  +....+.+.+        .+|-..+.+++.
T Consensus       360 LAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLIFQ--------NILLE~neeIl~  425 (800)
T 3oc3_A          360 LTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLVAE--------VVLIEEKDEIRE  425 (800)
T ss_dssp             HHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHHHH--------HHHHCSCHHHHH
T ss_pred             HHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHHHH--------HHHhCCcHHHHH
Confidence            66666544321   12347899999999999 9999999999998876  3333222222        345556778888


Q ss_pred             HHHHHHH
Q 009636          389 EAAWAIS  395 (530)
Q Consensus       389 ~a~~aL~  395 (530)
                      .+..+..
T Consensus       426 lS~~VWk  432 (800)
T 3oc3_A          426 MAIKLLK  432 (800)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777664

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.66  E-value=0.0081  Score=65.77  Aligned_cols=300  Identities=12%  Similarity=0.095  Sum_probs=161.4

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHh--CC
Q 009636           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF-VEFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVID--HG  159 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~L-v~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~--~g  159 (530)
                      ..++++...++.++..+++-   -+...+++.++++.+ ..+|.  + +.++..|+.||..+.... ++....+..  ..
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            45677777888999988765   345677788889888 46663  4 789999999999998743 222222211  12


Q ss_pred             ChHHHHHhhC-------------CCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-C-------ChHHHHHhhcCCCchhH
Q 009636          160 AVPIFVKLLY-------------SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-G-------GLVPLLAQLNGQPKLSM  218 (530)
Q Consensus       160 ~i~~L~~ll~-------------~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-~-------~i~~Ll~ll~~~~~~~~  218 (530)
                      ++..+..++.             ..+.+.....+..+..+....   ...+... +       ++..++.+- ..++.++
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~---~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei  367 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH---GQLLEKRLNLREALMEALHYMLLVS-EVEETEI  367 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH---HHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH---HHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence            2222222221             122344444444554443211   1111111 1       233334433 5668888


Q ss_pred             HHHHHHHhhhhccCC----C-----CC------------ChhhhhchHHHHHH----hhcCCC-----------------
Q 009636          219 LRNATWTLSNFCRGK----P-----QP------------PFDQVSPALPALAH----LIHSND-----------------  256 (530)
Q Consensus       219 ~~~a~~~L~~L~~~~----~-----~~------------~~~~~~~~l~~L~~----ll~~~d-----------------  256 (530)
                      .+.+......|...-    +     .+            ......+++..|..    -+..++                 
T Consensus       368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            888887776665421    1     00            00112233332322    222111                 


Q ss_pred             ---h-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhc
Q 009636          257 ---D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (530)
Q Consensus       257 ---~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~~~  326 (530)
                         .     +...+++..+.++.  ..+....     .++.+...+..  .+|.....++|++|.++..-....+.-.-.
T Consensus       448 ~d~~~~~ly~~mrd~L~~lt~l~--~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETLVYLTHLD--YVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHC--HHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHhcCC--HHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence               0     12222332333222  1222221     23344444443  468899999999999985433222222223


Q ss_pred             CchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009636          327 QALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       327 ~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~  402 (530)
                      .+++.|+.+..+..    ...++...+|++|..+.--..+...+  ..++..|++.+...++.|+..|+.++..++..+.
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~  598 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR  598 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            56677777665431    23456667899999876322222222  1356677888888889999999999999987553

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0019  Score=59.76  Aligned_cols=193  Identities=11%  Similarity=0.086  Sum_probs=126.3

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcH-HHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009636           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~  148 (530)
                      +..+| +-+.|.|.++..|..|+..+.+++........ ....  -....+.+...+.+.+ ..++..++.++..++...
T Consensus         9 ~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~   86 (278)
T 4ffb_C            9 YTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAF   86 (278)
T ss_dssp             --CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC
T ss_pred             hhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHh
Confidence            34556 66889999999999999999998865321111 1111  1234566777887777 899999999999887632


Q ss_pred             h-----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009636          149 S-----EHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (530)
Q Consensus       149 ~-----~~~~~~~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a  222 (530)
                      .     .......-..+++.|+. .+.+....++..+..++..++...... ..     ++..++..+ .+.++.++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~  159 (278)
T 4ffb_C           87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAA  159 (278)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHH
T ss_pred             hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHH
Confidence            1     11111112345677775 477788889998888887776332211 11     244555566 67788888888


Q ss_pred             HHHhhhhccCC--CCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009636          223 TWTLSNFCRGK--PQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       223 ~~~L~~L~~~~--~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (530)
                      +.+|..+....  .... ......+++.+..++.+.|+.|+..+..++..+...
T Consensus       160 l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          160 ANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            88888776542  1111 223455677788899999999999999998777543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.40  E-value=0.0048  Score=67.52  Aligned_cols=307  Identities=10%  Similarity=-0.004  Sum_probs=165.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hhhhHhhcCChHH
Q 009636          128 EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CRDLVLSQGGLVP  205 (530)
Q Consensus       128 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~~~i~~~~~i~~  205 (530)
                      .+ +.+...++.+|......-  ....++..+.++.+.+++..  +.++..|+.+|..+......  .+..++..=.+..
T Consensus       205 ~~-~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KN-YGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TC-HHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            55 889999999999998832  23456666788888888864  78999999999999854432  2222221101122


Q ss_pred             HHHhhcC-CCchhHHHHHHHHhhhhc------cCCCC-CC-------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 009636          206 LLAQLNG-QPKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (530)
Q Consensus       206 Ll~ll~~-~~~~~~~~~a~~~L~~L~------~~~~~-~~-------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l  270 (530)
                      .+..+.. ..|.+..+..+..+..++      ...+. ..       .....++++.++.++.+++.++...++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            2222212 456666554444443221      11121 11       134467889999999998888877665555443


Q ss_pred             ccC-----C----hHHHHHHHHhCcHHHHHHhhCCCCc----------------hhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636          271 SDG-----T----NDKIQAVIEAGVFPRLAEFLMHPSP----------------SVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       271 ~~~-----~----~~~~~~~~~~~~l~~L~~lL~~~~~----------------~~~~~al~~L~nl~~~~~~~~~~~~~  325 (530)
                      ...     .    ......++. .+++.++.-+..++.                ..|......+..++.-.+...-..+-
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            311     0    111121222 344445554543211                12222221111221111111111000


Q ss_pred             cCchHHHHHhhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H----hCcHHHHHHHHh-----cCchhHHHHHHH
Q 009636          326 YQALPCLLNLLS---GNYKKSIKKEACWTVSNITAGNREQIQAVI-E----ANIIGPLVALLE-----NAEFDIKKEAAW  392 (530)
Q Consensus       326 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~ll~-----~~~~~v~~~a~~  392 (530)
                      .-+.+.+...+.   +. +...++.+..+|+.++.+......... .    ..+++.+..++.     ..++.|+..+++
T Consensus       439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME  517 (980)
T ss_dssp             HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            012222323332   12 456788899999999875332111000 0    014455666655     567999999999


Q ss_pred             HHHHhhcCC--CHHHHHHHHHcCChHHHHh--ccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636          393 AISNATSGG--THEQIKFLVIQGCIKPLCD--LLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       393 aL~nl~~~~--~~~~~~~l~~~~~i~~L~~--lL~~~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      +++..+..-  .++...     .++..+++  .+.++++.++..|..++.++++....
T Consensus       518 ~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          518 ILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            999987632  222222     23555555  55567888999999999999987654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.39  E-value=0.017  Score=52.93  Aligned_cols=294  Identities=17%  Similarity=0.177  Sum_probs=177.0

Q ss_pred             HHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHH
Q 009636          183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLT  261 (530)
Q Consensus       183 L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~  261 (530)
                      |.|+..+....-+-+++.+++..+...+ ..++.++.+..+..|...+... ..........+|.++..+. +++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence            3444455555667777888888888888 7788999999999998888764 2233344677888888776 67899999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-------Cch-------hHHHHHHHHhHhhc-------------
Q 009636          262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-------SPS-------VLIPALRTVGNIVT-------------  314 (530)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~-------~~~~al~~L~nl~~-------------  314 (530)
                      .....++|...+........+..|.+..|...+...       +..       +...+++++.|...             
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            999999999998888778888889999998886542       222       33445555555532             


Q ss_pred             CC--chhhHHHhhcCchHHHHHhhcCCC-----chhHHHHHHHHHHHHhcCC---HHHH----HHHHHhCcHHHHHHHHh
Q 009636          315 GD--DMQTQCVIEYQALPCLLNLLSGNY-----KKSIKKEACWTVSNITAGN---REQI----QAVIEANIIGPLVALLE  380 (530)
Q Consensus       315 ~~--~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~i~~L~~ll~  380 (530)
                      |.  ..+...+++..++..|+.+|+.+.     --++|........-+....   .+..    +.+-..+++-.++-.+.
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s  503 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS  503 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence            11  122334567788899999887642     1244554444433333211   0100    01112233333333221


Q ss_pred             c-----Cc-------hhHHHHHHHHHHHhhcCC-CHHHHHHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHHhhh
Q 009636          381 N-----AE-------FDIKKEAAWAISNATSGG-THEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       381 ~-----~~-------~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~al~~l~~ll~~~~  445 (530)
                      .     .+       ..+.+.+...|..+...+ ..++...  ....++.=+.+|+++  .|....+++..-.++++.++
T Consensus       504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh--~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP  581 (619)
T 3c2g_A          504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQ--YSYSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP  581 (619)
T ss_dssp             HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH--TTTTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh--heeeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence            1     11       123344445555554432 2222111  011233334566544  56677778888888888776


Q ss_pred             hhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          446 AEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       446 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      ....           .-.  ---..++.+.+|.|+++...|..++.+|
T Consensus       582 ~~Ad-----------~W~--i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          582 TRAD-----------IWT--IDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             THHH-----------HSC--CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             chhc-----------cce--echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            5321           100  0124678889999999999999999876

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.0051  Score=56.79  Aligned_cols=189  Identities=11%  Similarity=0.122  Sum_probs=126.2

Q ss_pred             HHHhhCCCCchhHHHHHHHHhHhhcCCchhh--HHHh--hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-H----
Q 009636          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQT--QCVI--EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-R----  360 (530)
Q Consensus       290 L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~----  360 (530)
                      +-+-|.+.+|..|..|+..+..+....+...  ....  -....+.+...+.+. +..+...++.++..++... .    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            5577899999999999999988876543221  1111  123556677788777 8999999999999887521 1    


Q ss_pred             HHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009636          361 EQIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN  439 (530)
Q Consensus       361 ~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~  439 (530)
                      .......-..+++.|++- +.+....++..|..++..++....+..       .+++.+...+++.+|+++..++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            111111223467777764 667778899999988888775432111       135677788999999999999999999


Q ss_pred             HHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       440 ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ++.......      .+ ....+  ...+..+..+.++.|++|++.|..++-.+|-
T Consensus       166 ~l~~fg~~~------~~-~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          166 LMAAFGLTN------VN-VQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHTTTT------CC-HHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCc------CC-chhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            986532211      11 01111  1224566777899999999999999877664

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.33  E-value=0.049  Score=59.65  Aligned_cols=310  Identities=12%  Similarity=0.147  Sum_probs=167.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHhhhCCC-chhhh
Q 009636          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGDS-PRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~  195 (530)
                      ++.+..+|....++.+...++.+|..+.+--+  ...+++.+.++.+ ..+|  .++.++..|+.+|..|.+.. +.+.+
T Consensus       208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~  283 (1073)
T 3gjx_A          208 FQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE  283 (1073)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence            33344455444448888889999999887432  4467788888888 4666  46789999999999988542 22222


Q ss_pred             hHhh--cCChHHHHHhh------------cCCCchhHHHHHHHHhhhhccCCC-----CCC-hhhhhchHHHHHHhhcCC
Q 009636          196 LVLS--QGGLVPLLAQL------------NGQPKLSMLRNATWTLSNFCRGKP-----QPP-FDQVSPALPALAHLIHSN  255 (530)
Q Consensus       196 ~i~~--~~~i~~Ll~ll------------~~~~~~~~~~~a~~~L~~L~~~~~-----~~~-~~~~~~~l~~L~~ll~~~  255 (530)
                      .+..  ..++..+-.++            ....+.+.....+.++..+....-     .+. ......++..++.+...+
T Consensus       284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~  363 (1073)
T 3gjx_A          284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE  363 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence            2211  01111111111            123355667777777766554320     001 112233444556666677


Q ss_pred             ChhHHHHHHHHHHHhccC----C------------------hHHHHHHHH---hCcHHHHHHhhCCCCc-----------
Q 009636          256 DDEVLTDACWALSYLSDG----T------------------NDKIQAVIE---AGVFPRLAEFLMHPSP-----------  299 (530)
Q Consensus       256 d~~v~~~a~~~l~~l~~~----~------------------~~~~~~~~~---~~~l~~L~~lL~~~~~-----------  299 (530)
                      |.++...++..-..+...    .                  ... ..+..   ..+...++.-+..+..           
T Consensus       364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~  442 (1073)
T 3gjx_A          364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV  442 (1073)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence            888776655443333210    0                  011 11111   0222333333333211           


Q ss_pred             --------------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcC-CHH-H
Q 009636          300 --------------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAG-NRE-Q  362 (530)
Q Consensus       300 --------------~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~-~  362 (530)
                                    +....++..+.++.   ...+..    -+++.+...+..+ .+......+||+++.++.. .++ .
T Consensus       443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~---~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E  515 (1073)
T 3gjx_A          443 VREFMKDTDSINLYKNMRETLVYLTHLD---YVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE  515 (1073)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHHHHHHC---HHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHhcCC---HHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccc
Confidence                          01122222222222   111111    1233444444432 2577889999999999763 322 2


Q ss_pred             HHHHHHhCcHHHHHHHHhcC---c--hhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009636          363 IQAVIEANIIGPLVALLENA---E--FDIKKEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE  435 (530)
Q Consensus       363 ~~~l~~~~~i~~L~~ll~~~---~--~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~  435 (530)
                      ...+.  .+++.|+.+....   +  ..++...+|+++.....  .+++..+.     ++..|...+...++.++..|+.
T Consensus       516 ~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~  588 (1073)
T 3gjx_A          516 KRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACD  588 (1073)
T ss_dssp             HHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHH
T ss_pred             cchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHH
Confidence            22233  3677777776544   2  33555566888776542  13343333     5777888888889999999999


Q ss_pred             HHHHHHHhhhh
Q 009636          436 GLENILKVGEA  446 (530)
Q Consensus       436 ~l~~ll~~~~~  446 (530)
                      ++.+++..+..
T Consensus       589 af~~i~~~C~~  599 (1073)
T 3gjx_A          589 TFIKIAQKCRR  599 (1073)
T ss_dssp             HHHHHHHHTGG
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.20  E-value=0.006  Score=55.06  Aligned_cols=181  Identities=14%  Similarity=0.091  Sum_probs=117.3

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----CchhhHH
Q 009636          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQC  322 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~----~~~~~~~  322 (530)
                      .+...+.+.|..-...++..|........+.....++ .++..+.-.+.+.+..+...++.+|..+...    .......
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            3455555666666666666665544333322211111 1233333234467888888888888776431    1111111


Q ss_pred             HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      - -.-++|.|+.-+-+. ...+|..+-.++..++. .++.        .+++.+++-+.+.+.++|.+++..+..+....
T Consensus       129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            0 124689999999888 78899888877766654 2222        36677888888899999999999999987622


Q ss_pred             CHHHHHHHHHcCCh---HHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          402 THEQIKFLVIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       402 ~~~~~~~l~~~~~i---~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ...      ....+   +.+..++.+.|..++..|+.++..+....
T Consensus       199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            111      23468   99999999999999999999998877543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.10  E-value=0.013  Score=52.96  Aligned_cols=177  Identities=16%  Similarity=0.099  Sum_probs=114.8

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhc----cCCCC
Q 009636          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC----RGKPQ  235 (530)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~----~~~~~  235 (530)
                      .+...+-+.+..-+..++..|.......+.  ..+.   .+..+++.+.   .+.+..+...++.+|..+.    .....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            344455555666666666666554433221  1111   2222222221   3557777777777766653    32233


Q ss_pred             CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~  315 (530)
                      ........++|.|+.-+.+..+.++..+-.++..+..-       .-...+++.++.-+.+.++..+..++..++.+...
T Consensus       125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            33344567899999999888888988877776555421       11124667788889999999999999999999753


Q ss_pred             CchhhHHHhhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          316 DDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       316 ~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ....     ....+   +.+..++.+. +..||..|..++..+-.
T Consensus       198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            3222     23467   9999999998 99999999999987755

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.06  E-value=0.097  Score=48.30  Aligned_cols=202  Identities=13%  Similarity=0.072  Sum_probs=148.1

Q ss_pred             HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch----hhHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM----QTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       278 ~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      .+.+...+++..|+..|..-+...+..+..+++++.+....    ..+.+.. ..++..|+.-..   ++++--.+...|
T Consensus        71 ~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mL  147 (341)
T 1upk_A           71 AQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIML  147 (341)
T ss_dssp             HHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHH
Confidence            34566779999999999998999999999999999875432    2233332 234444444433   445555555555


Q ss_pred             HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhccCCCChHH
Q 009636          353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---GCIKPLCDLLVCPDPRI  429 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~i~~L~~lL~~~~~~~  429 (530)
                      ..++.+ ......++..+.+..+.+.++.++.++...|..++..+.... ...+..++..   .+...+..+|.+++.-+
T Consensus       148 Recir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT  225 (341)
T 1upk_A          148 RECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVT  225 (341)
T ss_dssp             HHHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence            555544 566777788888889999999999999999999999998763 3444444433   34777888999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009636          430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET  492 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~  492 (530)
                      +..++..|+.++-.-.+..-        ....+.+..-+..+..|..+++..|+-.|..+..=
T Consensus       226 kRQSlKLLgelLldr~N~~v--------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKv  280 (341)
T 1upk_A          226 KRQSLKLLGELLLDRHNFTI--------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKV  280 (341)
T ss_dssp             HHHHHHHHHHHHHSGGGHHH--------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchHHHH--------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhheee
Confidence            99999999999977555332        35566667778888899999999999888887763

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.03  E-value=0.032  Score=51.47  Aligned_cols=201  Identities=15%  Similarity=0.153  Sum_probs=138.9

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      .+...+.+..|+..|..-+-+.+..+..++.++.......+    +.+..  -...+..++....++++.-.+...|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            34556788889999988888999999999999986554322    22222  1222233332334556666666666666


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCCchhHHHHH
Q 009636          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPAL  306 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~~~~al  306 (530)
                      .++..........+.+-.+...++.++=++..+|..++..+..........++..   .++...-.+|.+++.-++..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            5554333333334455566677778888899999999988876655555555543   3577788899999999999999


Q ss_pred             HHHhHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          307 RTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       307 ~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ..||.+......   ....+-+..-+..++.+|++. +..++.+|..+.--+.+
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999999864322   222333556789999999999 99999999998887776

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.95  E-value=0.066  Score=47.17  Aligned_cols=187  Identities=12%  Similarity=0.119  Sum_probs=124.6

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------hCCCCc-----hhHHHHHHHHhHhhcCCchhhHH
Q 009636          256 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEF-------LMHPSP-----SVLIPALRTVGNIVTGDDMQTQC  322 (530)
Q Consensus       256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~l-------L~~~~~-----~~~~~al~~L~nl~~~~~~~~~~  322 (530)
                      +++.++.|+..|+.=-+.-++....+.. .|.+..|++=       +..+.-     .-...|+..+-.++. +++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            4455677666665543433333333332 2554444332       222221     123455666666675 5556667


Q ss_pred             HhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      ++++++.-.|..+|+...    -+.+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.|.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            888998888888887652    24688889999999987 7889999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHc--------CChHHH-HhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636          398 TSGGTHEQIKFLVIQ--------GCIKPL-CDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       398 ~~~~~~~~~~~l~~~--------~~i~~L-~~lL~~~~~~~~~~al~~l~~ll~~~~  445 (530)
                      ..  +.....++...        .++..+ ..+.+.+++.+...++.+...+.....
T Consensus       173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence            87  33555544321        123333 234467788888888888887775543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.84  E-value=0.19  Score=48.69  Aligned_cols=155  Identities=15%  Similarity=0.119  Sum_probs=107.0

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009636          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (530)
Q Consensus       164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  243 (530)
                      ++...+ .+...+..|+..|.....+-|..++.     ++..++.++ .+.+..++..|+..|..+|.+      .....
T Consensus        34 Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~k  100 (507)
T 3u0r_A           34 ILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPR  100 (507)
T ss_dssp             HHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHH
T ss_pred             HHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhh
Confidence            344433 56889999999999999888877666     688899999 888999999999999999987      23677


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC-CchhhHH
Q 009636          244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-DDMQTQC  322 (530)
Q Consensus       244 ~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~-~~~~~~~  322 (530)
                      +..+|+++|.++++.-...+-++|..+...++.        +.+..+...+.++++.+|..++..|..-... .......
T Consensus       101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~  172 (507)
T 3u0r_A          101 VADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTK  172 (507)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccH
Confidence            888999999998877666666677666654432        2233344444446788898888887554432 1111112


Q ss_pred             HhhcCchHHHHHhhcCC
Q 009636          323 VIEYQALPCLLNLLSGN  339 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~  339 (530)
                      -++.-++..+.++|.+-
T Consensus       173 E~E~~i~~~ikK~L~DV  189 (507)
T 3u0r_A          173 EVEELILTESKKVLEDV  189 (507)
T ss_dssp             HHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            22334455566666443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.59  E-value=0.011  Score=58.16  Aligned_cols=246  Identities=13%  Similarity=0.073  Sum_probs=159.3

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hhhhHhhcCChHHHHHhhc---------CCCchhHHHHHHHHhhh
Q 009636          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CRDLVLSQGGLVPLLAQLN---------GQPKLSMLRNATWTLSN  228 (530)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~~~i~~~~~i~~Ll~ll~---------~~~~~~~~~~a~~~L~~  228 (530)
                      +...|+.-|-++.+++|..|+.+|..+......  .+.........-.++-++.         +..-..+++.|+.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            456677777789999999999999988733211  0110011122222222221         12245789999999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~  308 (530)
                      + ..-+..     ..++..++..+.....+++..++-.|.++.+--.    . . .++++.++..|.+.+.+++..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~----~-L-d~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE----D-K-DGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC----C-H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH----H-H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence            9 554443     3455666666677889999999999999822111    1 2 3678888888999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      |..++  .+...     ..++..+...|.+-.+- .-.......|+.++.....   ...+...+|.|...+.+.-..||
T Consensus       323 LiPIA--~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR  392 (800)
T 3oc3_A          323 LCHFP--ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR  392 (800)
T ss_dssp             HTTSC--CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred             hhhhc--chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence            99998  22222     23466677777654221 2233445566666653321   01123688999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009636          388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE  438 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~  438 (530)
                      ..++.+|..+..   ....+.        .+.++|-.++++++..++.+..
T Consensus       393 ~AVL~TL~tfL~---~~~LRL--------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          393 TSILNMVKNLSE---ESIDFL--------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHTTTCCC---HHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh---hhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence            999999988872   232222        2344566788888888887764

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.41  E-value=0.27  Score=45.18  Aligned_cols=178  Identities=15%  Similarity=0.156  Sum_probs=122.9

Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009636          262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK  341 (530)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  341 (530)
                      .+...+ ++.-++...+.-+++.+++..+...+...+.++....+..|-..+.... .. ..--...+|.++..+.-..+
T Consensus       262 R~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~-~t~L~e~LPFi~~~i~~h~e  338 (619)
T 3c2g_A          262 RTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LA-KTPLENILPFLLRLIEIHPD  338 (619)
T ss_dssp             HHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GG-TSCCTTHHHHHHHHHHHCCC
T ss_pred             HHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hh-hccccccchHHHHHhccCCC
Confidence            333334 4444555678889999999999999999999999999999988765322 11 01123578888888764448


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-------chhHHHHHHHHHHHhhc-------------CC
Q 009636          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-------EFDIKKEAAWAISNATS-------------GG  401 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~~-------------~~  401 (530)
                      .++.......|+|..++........+..|.++.|...+...       +..-++.||..++|...             +|
T Consensus       339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG  418 (619)
T 3c2g_A          339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG  418 (619)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred             cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence            88999999999999999888888888999999999987433       33445556655555431             11


Q ss_pred             --------CHHHHHHHHHcCChHHHHhccCCCCh------HHHHHHHHHHHHHHH
Q 009636          402 --------THEQIKFLVIQGCIKPLCDLLVCPDP------RIVTVCLEGLENILK  442 (530)
Q Consensus       402 --------~~~~~~~l~~~~~i~~L~~lL~~~~~------~~~~~al~~l~~ll~  442 (530)
                              ...+...+++.++++.|..+|+-+.-      +++..++..+..++.
T Consensus       419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR  473 (619)
T 3c2g_A          419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR  473 (619)
T ss_dssp             CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence                    23455566777888888888864321      355555555554443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.08  E-value=0.14  Score=45.07  Aligned_cols=141  Identities=12%  Similarity=0.158  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHH
Q 009636           91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFV  165 (530)
Q Consensus        91 ~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~  165 (530)
                      ..|+..+..+++.  ++....+++..+.-.|..+|+..+    ...++..++.+++.+.. ++++....+.+.+++|..+
T Consensus        74 cnaLaLlQcvAsh--petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           74 CNALALLQCVASH--PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHHC--TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHcC--cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            3556666677765  677888889887777788887655    34688889999999886 4577778888999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-------hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       166 ~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~-------~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      +.++.+++-.+..|..++..|..++......+.       -..++..++..+...++..+.+++++|-..|+.+.
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            999999999999999999999876654322211       11234445555556778899999999999998874

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.08  E-value=0.0051  Score=55.11  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=27.8

Q ss_pred             HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      +.|..++.++++.++..+...++                  .+.|..+ .++ +..||..+...|
T Consensus       197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L  241 (244)
T 1lrv_A          197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence            44666677777777777776643                  2334444 555 777877765443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.98  E-value=0.068  Score=46.70  Aligned_cols=147  Identities=12%  Similarity=0.046  Sum_probs=103.1

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhc-CCchh
Q 009636          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVT-GDDMQ  319 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~al~~L~nl~~-~~~~~  319 (530)
                      ..+++....+..++..+++..++..|+.+ ....         .+++.+.. +...+++.|+..+..+++.++. ..++ 
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            44556666677777789999999988887 3111         34566666 5667889999999999999884 3332 


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                             ..++.+..+..++ ++.+|+.|...+.-.+.. +..  ..--.-+++.|-.+..+++.-||+...|+|..++.
T Consensus       139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~-~~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK  207 (240)
T 3l9t_A          139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNR-PYF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK  207 (240)
T ss_dssp             -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGS-TTT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhcc-chh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence                   2577888999999 999999988776443321 000  00001245666667777889999999999999998


Q ss_pred             CCCHHHHHHHHH
Q 009636          400 GGTHEQIKFLVI  411 (530)
Q Consensus       400 ~~~~~~~~~l~~  411 (530)
                      . +|+.+..+++
T Consensus       208 ~-~Pd~V~~~~~  218 (240)
T 3l9t_A          208 K-FPDLVKIELK  218 (240)
T ss_dssp             T-CHHHHHHHHH
T ss_pred             h-CHHHHHHHHH
Confidence            7 6776655544

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.98  E-value=0.32  Score=42.50  Aligned_cols=144  Identities=15%  Similarity=0.042  Sum_probs=104.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhC-CCchhhh
Q 009636          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~-~~~~~~~  195 (530)
                      ++....+.+++. .++|..|+..|+.+ ....         .+++.+.. +...++..+++.+..+++.++. ..++.  
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            455556666666 79999999998887 3111         23566666 5556889999999999999984 33321  


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                            .++.+.... .+++..+++.|+..+.--+.. + ........++|.|..+..+++.-|+..+.|.|..++...+
T Consensus       140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                  456666666 888999999999988665543 2 1223335578888888888889999999999999999988


Q ss_pred             HHHHHHHH
Q 009636          276 DKIQAVIE  283 (530)
Q Consensus       276 ~~~~~~~~  283 (530)
                      +.+..+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.94  E-value=0.0095  Score=53.33  Aligned_cols=140  Identities=16%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009636          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (530)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  242 (530)
                      .|..++.++++.++..++..+   .               ...+..++ .+++..++..+...+   .            
T Consensus       102 ~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~------------  147 (244)
T 1lrv_A          102 QLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P------------  147 (244)
T ss_dssp             GGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C------------
T ss_pred             HHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C------------
Confidence            455556666666666655532   0               01222333 566666766666521   0            


Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009636          243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC  322 (530)
Q Consensus       243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~  322 (530)
                        .+.+..++.++++.|+..++..   +.               .+.+..++.++++.++..+...+             
T Consensus       148 --~~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l-------------  194 (244)
T 1lrv_A          148 --PGRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL-------------  194 (244)
T ss_dssp             --GGGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC-------------
T ss_pred             --HHHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC-------------
Confidence              0123345556667777666553   10               12344566777777777776542             


Q ss_pred             HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                           ..+.|..++.++ +..||..++..++                  .+.|..+ .+.++.|+..+...|
T Consensus       195 -----~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 -----RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             -----CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             -----CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                 123466667777 7888887776642                  2344444 777888888876554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.84  E-value=0.97  Score=50.71  Aligned_cols=301  Identities=8%  Similarity=0.025  Sum_probs=168.5

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC---
Q 009636           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG---  147 (530)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~-~~~~~~i~~~a~~~L~~l~~~---  147 (530)
                      .+..++..+.++  +++.+.+|-..|.++-..  .         .....+...|. .+.++.+|..|+..|.+....   
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~   80 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN   80 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence            355556555554  667788888888776432  1         12334444333 333489999999999987642   


Q ss_pred             --ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009636          148 --TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (530)
Q Consensus       148 --~~~~~~~~~~~g~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a  222 (530)
                        +++.+..+ +..++..+......   ....++...+.+++.|+...-..+.    .++++.++.++..  +......+
T Consensus        81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~--~~~~~e~~  153 (1204)
T 3a6p_A           81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ--GETQTELV  153 (1204)
T ss_dssp             GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT--CHHHHHHH
T ss_pred             cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC--CHHHHHHH
Confidence              23333333 33444544443211   3578889899999988743211110    1356777777733  44557778


Q ss_pred             HHHhhhhccCC---CCCChhh-----------hhchHHHHHHhhcC-------------------CChhHHHHHHHHHHH
Q 009636          223 TWTLSNFCRGK---PQPPFDQ-----------VSPALPALAHLIHS-------------------NDDEVLTDACWALSY  269 (530)
Q Consensus       223 ~~~L~~L~~~~---~~~~~~~-----------~~~~l~~L~~ll~~-------------------~d~~v~~~a~~~l~~  269 (530)
                      +.+|..|+...   .......           ...+++.+..++..                   .+..+...++.++.+
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            88888887542   1111110           11333444444432                   123466667777776


Q ss_pred             hccCChHHHHHHHHhC--cHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc--hhhHHHhh---cCchHHHHHhhc-----
Q 009636          270 LSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIE---YQALPCLLNLLS-----  337 (530)
Q Consensus       270 l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~--~~~~~~~~---~~~l~~L~~lL~-----  337 (530)
                      ....-+-  ..+....  +++.+..++.  ++.++..|+.+|..++....  .....++.   ...+..++..+.     
T Consensus       234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~  309 (1204)
T 3a6p_A          234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG  309 (1204)
T ss_dssp             TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred             HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence            6554331  2233322  6777776665  46789999999999997442  21111221   111334444432     


Q ss_pred             --CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636          338 --GNYKKSIKKEACWTVSNITAGNREQIQAVIE-----------ANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       338 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                        +..+.++.+..+.++..++.    ....++.           .++++.++.+..+++..+-..++.....+...
T Consensus       310 ~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          310 GLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence              11145677777777777752    1222221           24678888888888888888877766666553

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.47  E-value=0.95  Score=43.93  Aligned_cols=209  Identities=16%  Similarity=0.093  Sum_probs=120.1

Q ss_pred             CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 009636          214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (530)
Q Consensus       214 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  293 (530)
                      .+....+-|+..+..+....|.    .....+..++.+.+..|..|+..++..|..+|..  +.+.     .+.+.|+++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql  108 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL  108 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence            3577888888888887776542    3456788889999999999999999999999977  3333     567889999


Q ss_pred             hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcH
Q 009636          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANII  372 (530)
Q Consensus       294 L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i  372 (530)
                      |+.+++.-...+-.+|..+...++.        +.+..+..-+..+ ++.+|..+...|..-... ..+....-++.-++
T Consensus       109 Lqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          109 LQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            9998877777666666666654442        2344444445456 778888877777553321 11111111122233


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH---hccCCCChHHHHHHHHHHHHHHHhh
Q 009636          373 GPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC---DLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       373 ~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~---~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ..+.++|.+-...=-.-....|..+-...++...+.|++  ++....   .-+...|++.+...+.++..-+.+.
T Consensus       180 ~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F  252 (507)
T 3u0r_A          180 TESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF  252 (507)
T ss_dssp             HHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            444445543322222223333333333334433333321  111111   1233456666666666666554433

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.27  E-value=1.7  Score=40.09  Aligned_cols=185  Identities=16%  Similarity=0.117  Sum_probs=109.2

Q ss_pred             HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009636          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (530)
Q Consensus       288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (530)
                      ..+.+++.. ....+-+++..+.-++. .+.....+.+.    .++..+...+.....+..+.-++.+++|+..+. ...
T Consensus       106 ~~l~kil~W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~  182 (304)
T 3ebb_A          106 QILWKAINC-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQ  182 (304)
T ss_dssp             HHHHHHHTS-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHH
T ss_pred             HHHHHHHcC-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-hhH
Confidence            445555533 23455566666655543 22222222211    233344455544335667899999999998763 344


Q ss_pred             HHHHH--hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC----CHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHH
Q 009636          364 QAVIE--ANIIGPLVALLENAEFDIKKEAAWAISNATSGG----THEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEG  436 (530)
Q Consensus       364 ~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~----~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~  436 (530)
                      +.+..  ..+++.+...+.+.+..++..++..+.|++...    +.+....     ++..+..++. ..|++....++-+
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence            44443  234555555555567899999999999998731    2222222     3344444443 4688999999999


Q ss_pred             HHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009636          437 LENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLE  491 (530)
Q Consensus       437 l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~il~  491 (530)
                      |++++.....           ........|..+.+..+... ..+.|.+-|..+++
T Consensus       258 LGtL~~~~~~-----------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~  302 (304)
T 3ebb_A          258 LGTLISDDSN-----------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN  302 (304)
T ss_dssp             HHHHHTTCHH-----------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred             HHHHHhCChh-----------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            9999965332           34455555666666666544 67778888877764

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.13  E-value=0.9  Score=41.92  Aligned_cols=174  Identities=11%  Similarity=0.056  Sum_probs=99.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch
Q 009636          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG----AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~  192 (530)
                      +..+.++++.+.  +.+.-++.++.-++. .+.....+.+..    ++..++..+.. ..+..+-.++++++|+..... 
T Consensus       105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            345555554443  344445555544444 444444443321    22334445443 456678899999999986665 


Q ss_pred             hhhhHhhc--CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHH
Q 009636          193 CRDLVLSQ--GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALS  268 (530)
Q Consensus       193 ~~~~i~~~--~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~  268 (530)
                      .++.+...  .++..+...+ .+.+..++..+..++.|++... ..........++..+..++. ..|.+....++.+++
T Consensus       181 g~~~l~~~~~~il~~~~~~~-~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALG  259 (304)
T 3ebb_A          181 GQKLMMSQRESLMSHAIELK-SGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALG  259 (304)
T ss_dssp             HHHHHHHTHHHHHHHHHGGG-SSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            55555432  1233333333 4567888888888888888653 11222233345555555564 358899999999999


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009636          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (530)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~  296 (530)
                      ++...+.+..+.....|+-..+-.+...
T Consensus       260 tL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          260 TLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            9998766544433344555544445544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.11  E-value=0.61  Score=41.32  Aligned_cols=142  Identities=14%  Similarity=0.084  Sum_probs=97.2

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-----HHHHHHH-----
Q 009636          341 KKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGT-----HEQIKFL-----  409 (530)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l-----  409 (530)
                      +.....++..+|..+.. +......++. .+.+..+...+.+.++.++..++..|.-++....     ......+     
T Consensus        67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~  145 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  145 (233)
T ss_dssp             HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence            34567778888887754 3455566664 5678888888988899999999888877765432     1112221     


Q ss_pred             -HHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009636          410 -VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  487 (530)
Q Consensus       410 -~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~  487 (530)
                       -+..-...+++.+. ..+.+....++..+..++...+....     --..+..|...|..+.+..+....++++..+..
T Consensus       146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~-----R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence             12234666777776 45667887888877777766543221     123677788999999999999999999866654


Q ss_pred             H
Q 009636          488 K  488 (530)
Q Consensus       488 ~  488 (530)
                      .
T Consensus       221 ~  221 (233)
T 2f31_A          221 V  221 (233)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.96  E-value=0.85  Score=40.34  Aligned_cols=141  Identities=13%  Similarity=0.152  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCChhhHHHHHh-CC
Q 009636           91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIASGTSEHTKVVID-HG  159 (530)
Q Consensus        91 ~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g  159 (530)
                      ..-+..|+..+...+..-++.+ ..+++..|+.+|..    +      .+...+..++.||..+.. +......+.. .+
T Consensus        19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~   96 (233)
T 2f31_A           19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEE   96 (233)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSS
T ss_pred             HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcH
Confidence            3445556655554322334555 34557777776653    1      125778999999999988 5666666665 56


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009636          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (530)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~  227 (530)
                      .+..+...+.++++.++..++..|+.+|..+. .. ...++          +..-..+++..+..+.+.+.+.+++..+.
T Consensus        97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN  176 (233)
T 2f31_A           97 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN  176 (233)
T ss_dssp             HHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            78889999988999999999999998886543 11 22222          22345566776644555666666666666


Q ss_pred             hhccCC
Q 009636          228 NFCRGK  233 (530)
Q Consensus       228 ~L~~~~  233 (530)
                      .+....
T Consensus       177 ~li~~~  182 (233)
T 2f31_A          177 ALITPA  182 (233)
T ss_dssp             HHHTTC
T ss_pred             HHHCCC
Confidence            666554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.60  E-value=0.73  Score=44.19  Aligned_cols=162  Identities=16%  Similarity=0.127  Sum_probs=107.8

Q ss_pred             hhhHHHhhcCchHHHHHhhcC----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhH
Q 009636          318 MQTQCVIEYQALPCLLNLLSG----------NYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDI  386 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v  386 (530)
                      ...+.+. .+++..|+.+|..          ..+......+..||..+... ......++. ...+..|...+.+..+.+
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~  178 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  178 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence            4444454 4556666666631          11346677788888888643 455555654 567899999999889999


Q ss_pred             HHHHHHHHHHhhcCCC-----HHHHHHH------HHcCChHHHHhccCC-CChHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 009636          387 KKEAAWAISNATSGGT-----HEQIKFL------VIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTD  454 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~i~~L~~lL~~-~~~~~~~~al~~l~~ll~~~~~~~~~~~~~  454 (530)
                      +..|+..|.-++....     ......+      -+..-...++..++. .+.+....++..+..++...+....     
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~-----  253 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----  253 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence            9999999988776432     1111111      123447778888876 5677888888888877776543221     


Q ss_pred             chhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009636          455 VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS  486 (530)
Q Consensus       455 ~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a  486 (530)
                      --..+..|..+|..+.+..+....++++....
T Consensus       254 R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi  285 (383)
T 3eg5_B          254 RVHIRSELMRLGLHQVLQELREIENEDMKVQL  285 (383)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHCChHHHHHHHhcCCChhHHHHH
Confidence            12357778899999999999888888875443

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.56  E-value=2  Score=48.15  Aligned_cols=295  Identities=10%  Similarity=0.058  Sum_probs=160.6

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHhhhCC-----Cchhhh
Q 009636          123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SPRCRD  195 (530)
Q Consensus       123 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~i~~~a~~~L~nl~~~-----~~~~~~  195 (530)
                      ..++...++..+.+|-..|..+-. ++         .+...+...|  .+.+..++..|+.+|.+....     +++.+.
T Consensus        19 ~~~~p~~~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~   88 (1204)
T 3a6p_A           19 VMMDPNSTQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV   88 (1204)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred             HHhCCCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            344332236778888877777654 22         1233333333  346788999999999887632     222222


Q ss_pred             hHhhcCChHHHHHhhcC--CCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636          196 LVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~--~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                      .+ +..++..+......  .....++..++.++..++... |    .....+++.++.++.+ ++.....++.+|..+++
T Consensus        89 ~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E  162 (1204)
T 3a6p_A           89 YL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE  162 (1204)
T ss_dssp             HH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence            22 22233333322101  145778888888888888764 3    2346788888888866 45556677777777753


Q ss_pred             C-------ChHHHHH---HHHh---CcHHHHHHhhCC-------------------CCchhHHHHHHHHhHhhcCCchhh
Q 009636          273 G-------TNDKIQA---VIEA---GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGDDMQT  320 (530)
Q Consensus       273 ~-------~~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~~~~~al~~L~nl~~~~~~~~  320 (530)
                      .       ...+...   .+..   .++..+..++..                   .+..+...++.++.+...--+.  
T Consensus       163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--  240 (1204)
T 3a6p_A          163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--  240 (1204)
T ss_dssp             HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--
T ss_pred             HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--
Confidence            2       1111111   1111   223333333322                   1234566677777766542221  


Q ss_pred             HHHhhcC--chHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHH---hCcHHHHHHHHh--------cCchh
Q 009636          321 QCVIEYQ--ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQAVIE---ANIIGPLVALLE--------NAEFD  385 (530)
Q Consensus       321 ~~~~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~---~~~i~~L~~ll~--------~~~~~  385 (530)
                      ..+.+..  +++.+..++.   ++.++..|+.+|..++...  ++....++.   ...+..++..+.        ..+.+
T Consensus       241 ~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e  317 (1204)
T 3a6p_A          241 SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYV  317 (1204)
T ss_dssp             HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred             HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence            2233332  6777776665   5678999999999999732  333322322   111334444432        22456


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHH-----------cCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636          386 IKKEAAWAISNATSGGTHEQIKFLVI-----------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       386 v~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~  443 (530)
                      +.+..+..+..+..    .. ..++.           .++++.+..+...++..+...++.....+++.
T Consensus       318 ~~k~l~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          318 FLKRLCQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            77777777777652    11 11221           13466677777777777777777666655544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.54  E-value=1.4  Score=42.21  Aligned_cols=157  Identities=12%  Similarity=0.114  Sum_probs=104.2

Q ss_pred             HHHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 009636           76 PVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNI  144 (530)
Q Consensus        76 ~~l~~~l~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~----------~~~~~i~~~a~~~L~~l  144 (530)
                      ..++..|+++.. ......+..|+.-+...+..-++.++ .+++..|+.+|..          ..+...+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            455666665432 22345677777666654333456666 4557888887752          11257889999999999


Q ss_pred             hcCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhc
Q 009636          145 ASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN  211 (530)
Q Consensus       145 ~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~  211 (530)
                      .. +......++. ...+..|...+.+..+.++..++..|+.+|.... .. ...++          +..-+.+++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            87 5556666665 5678999999999999999999999999996553 21 22222          2334677788885


Q ss_pred             CCCchhHHHHHHHHhhhhccCCC
Q 009636          212 GQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       212 ~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      ...+.+...+++..+..+....+
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCC
Confidence            44567777766666666666643

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.95  E-value=4.8  Score=44.33  Aligned_cols=172  Identities=13%  Similarity=0.147  Sum_probs=109.6

Q ss_pred             hHHHHHhhcC---CCchhHHHHHHHHhhhhc----cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636          203 LVPLLAQLNG---QPKLSMLRNATWTLSNFC----RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       203 i~~Ll~ll~~---~~~~~~~~~a~~~L~~L~----~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                      +..+..++..   ..++.+...++.+++.|.    ...+.........+...+...+...+.+-..-++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            4445555522   124556666666665554    4433333334556666677777777888888899999998642  


Q ss_pred             HHHHHHHHhCcHHHHHHhhCC-----C--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-CCchhHHHH
Q 009636          276 DKIQAVIEAGVFPRLAEFLMH-----P--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKE  347 (530)
Q Consensus       276 ~~~~~~~~~~~l~~L~~lL~~-----~--~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~  347 (530)
                               ..++.|.+++..     .  ...++..|+++|.+++...+...        -+.++.++.+ ..++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence                     345666666642     1  23577889999999986544332        3456677743 227899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCH
Q 009636          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTH  403 (530)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~  403 (530)
                      |+..|... .-+..         .+..+...+.. .+..|.......|.+++....+
T Consensus       534 A~~~Lm~t-~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHH-CcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            99888543 12222         44555666655 4788999999999999887665

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.39  E-value=3.3  Score=39.71  Aligned_cols=140  Identities=14%  Similarity=0.085  Sum_probs=95.3

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-----HHHHH-----
Q 009636          341 KKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE-----QIKFL-----  409 (530)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-----~~~~l-----  409 (530)
                      +.....++..||..+... ......++. .+.+..+...+.+..+.++..++..|..++....++     ....+     
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            346677888888887543 445555554 567888888888888999999988777776643211     11111     


Q ss_pred             -HHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009636          410 -VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS  486 (530)
Q Consensus       410 -~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a  486 (530)
                       -+..-...+++.+. ..+.+....++..+..++...+....     --.++..|..+|..+.|..+....++++....
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi  223 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQL  223 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence             12234666777776 45667888888888877776554221     12367789999999999999988888886553

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=92.78  E-value=4.3  Score=38.73  Aligned_cols=235  Identities=14%  Similarity=0.053  Sum_probs=113.2

Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      .+..++...+..|+.++.++++.-|+..-.+|.++-+.-...|..+.. .+-..+...+.......-....+.++..+..
T Consensus       122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin  200 (403)
T 3fga_B          122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN  200 (403)
T ss_dssp             HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence            334444556788999999999999999999998887555544444332 1223344444222222223344555555555


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009636          232 GKPQP-PFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       232 ~~~~~-~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L  309 (530)
                      +-..+ ......-....|+.+-....- ..-.....|+......++.....++     ..|+..=-..+..-...-+.-+
T Consensus       201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~El  275 (403)
T 3fga_B          201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNEL  275 (403)
T ss_dssp             HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHHHH
Confidence            44222 122222233344444443321 1122233334333333333322211     1122111112222222233334


Q ss_pred             hHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHH----h-
Q 009636          310 GNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALL----E-  380 (530)
Q Consensus       310 ~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll----~-  380 (530)
                      ..+...-+ ...+. +...+...+...+.+. +..|.+.|+....|      +.+..++.   ..++|.+...+    . 
T Consensus       276 e~iLe~~~~~~f~~-i~~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~~  347 (403)
T 3fga_B          276 EEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKT  347 (403)
T ss_dssp             HHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhCCHHHHHH-HHHHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            44443322 22211 2224667777778887 77777776654321      22222222   12455554444    2 


Q ss_pred             cCchhHHHHHHHHHHHhhcC
Q 009636          381 NAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       381 ~~~~~v~~~a~~aL~nl~~~  400 (530)
                      +.+..++..+..++.-+...
T Consensus       348 HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          348 HWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             CSCHHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHHHHh
Confidence            23788998888888877653

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=92.58  E-value=12  Score=41.32  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=108.9

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHhhhC----CCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhh
Q 009636          161 VPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       161 i~~L~~ll~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L  229 (530)
                      +..+..++.+    .++.+++.|+.+++.+..    ..+.|..     ..++.+.+.+.   ...+.+-...++.+|.|+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            4555666655    467788888888887752    3222221     22444444432   344677778889999998


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCCch
Q 009636          230 CRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPS  300 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~  300 (530)
                      -..          ..++.|.+++..       ....++..|+++|..+....+...+        +.++++.  ...+++
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence            752          356777777642       1356888999999999876654333        5567777  345778


Q ss_pred             hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                      +|..|+..|-.-   ++..       ..+..+...+..+.+..|.....-.|.+++..+
T Consensus       530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            888888877432   2221       235667777777657888888888899998754

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.53  E-value=4.8  Score=38.55  Aligned_cols=156  Identities=12%  Similarity=0.126  Sum_probs=97.3

Q ss_pred             HHHHhhcCCChH-HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 009636           77 VMVAGVWSNDSG-VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA  145 (530)
Q Consensus        77 ~l~~~l~s~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~  145 (530)
                      .++..|.+.... .....+..|+..+...+...++.+. .+++..|+.+|..    .      .+...+..++.||..+.
T Consensus         8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            345555543222 1223455666555543223345554 4557777776642    1      12578899999999998


Q ss_pred             cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhcC
Q 009636          146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNG  212 (530)
Q Consensus       146 ~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~~  212 (530)
                      . +......+.. .+++..+...+.++++.++..++..|+.+|.... .. ...++          +..-+.+++..+..
T Consensus        87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            8 5555555554 5678999999988899999999999998886543 11 22221          22345567777755


Q ss_pred             CCchhHHHHHHHHhhhhccCCC
Q 009636          213 QPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       213 ~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      +.+.+...+++..+..+....+
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~  187 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAE  187 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCS
T ss_pred             CChHHHHHHHHHHHHHHHCCCC
Confidence            5667777666666666666644

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=91.26  E-value=11  Score=36.69  Aligned_cols=237  Identities=15%  Similarity=0.048  Sum_probs=120.2

Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636          150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       150 ~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      ...+..++..++..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-....+.+++.+
T Consensus       153 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSI  231 (449)
T 2npp_B          153 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSI  231 (449)
T ss_dssp             TTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHH
T ss_pred             hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence            333445556678889999999999999999999988876554455444332 3334445553333333444566666666


Q ss_pred             ccCCCCC-ChhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHH
Q 009636          230 CRGKPQP-PFDQVSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (530)
Q Consensus       230 ~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~  307 (530)
                      ..+...+ ......-....|+.+.....-. .-.....|+......++.....+     +..|+..=-..+..-...-+.
T Consensus       232 inGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~  306 (449)
T 2npp_B          232 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLN  306 (449)
T ss_dssp             HSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHH
T ss_pred             HhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHH
Confidence            6664222 2222222334455555444311 12223334444333333332221     122222111122222222333


Q ss_pred             HHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc--
Q 009636          308 TVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN--  381 (530)
Q Consensus       308 ~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~--  381 (530)
                      -+..+....+ ...+. +...+...+..++.+. +..|-+.|+....|      +.+..++.   ..++|.+...+..  
T Consensus       307 eleeile~~~~~ef~~-i~~~lF~~la~ci~S~-hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L~~~s  378 (449)
T 2npp_B          307 ELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNS  378 (449)
T ss_dssp             HHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHhCCHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHHHHHH
Confidence            4444443222 22222 2234667777888887 77787777644322      22222222   1255666665522  


Q ss_pred             ---CchhHHHHHHHHHHHhhcC
Q 009636          382 ---AEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       382 ---~~~~v~~~a~~aL~nl~~~  400 (530)
                         .+..|+..|..++.-+...
T Consensus       379 ~~HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          379 KTHWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             TCCSSTTHHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHHHHHH
Confidence               2677888888888766654

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.55  E-value=3.3  Score=37.58  Aligned_cols=134  Identities=14%  Similarity=0.105  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHhHhhcCCchhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHH
Q 009636          300 SVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPL  375 (530)
Q Consensus       300 ~~~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L  375 (530)
                      .....|+..|--++..-.... .++.  ..++..|+ +.... .+.++..|+.+|+.....+|..+..+.+  ..++..+
T Consensus        43 ~~le~aLD~L~ElSHDi~~G~-KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           43 ARLEDSFDRIMEFAHDYKHGY-KIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHGGGTTSHHHHH-HHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHhhh-HHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            345667777777765333332 3333  23344444 22333 6789999999999999999999988876  3456666


Q ss_pred             HHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHH
Q 009636          376 VALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK  442 (530)
Q Consensus       376 ~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~al~~l~~ll~  442 (530)
                      +.-|..       ....+++.-+.+|.-|+.... .+     ....+..|..++...  ++.++..++..+..++.
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            655433       234677777788888877531 11     134567777766655  88999999999988885

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=88.39  E-value=1.7  Score=34.54  Aligned_cols=76  Identities=9%  Similarity=0.165  Sum_probs=53.8

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhh-hccHHHHHHHhcCCC--------HHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD-AEGLEKIESLQTHDN--------AEIYE  484 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~~l~~~~~--------~~v~~  484 (530)
                      +++.|..-|..+++.+...+|.+|..++..+...          |...+.. ...++.+.+.+..++        ..|+.
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~  119 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE  119 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHH
Confidence            5777888888888999999999999999776442          3433332 233444444444433        67999


Q ss_pred             HHHHHHHHhCCCCCC
Q 009636          485 KSVKLLETYWLDDED  499 (530)
Q Consensus       485 ~a~~il~~~~~~~~~  499 (530)
                      +|.++++-.|+++..
T Consensus       120 ~AkEl~~ll~d~~~~  134 (140)
T 1vdy_A          120 TAHETISAIFSEENG  134 (140)
T ss_dssp             HHHHHHHHHTCCSSC
T ss_pred             HHHHHHHHHhCcCCC
Confidence            999999999986554

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=88.03  E-value=1.4  Score=35.64  Aligned_cols=74  Identities=8%  Similarity=-0.107  Sum_probs=60.5

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHHhh
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll~~~  444 (530)
                      ++..|.+-+.+.++.++..|+..|-.++.++...+...+....++..|..++..      .++.|+..++..+...-...
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            456777778889999999999999999998888877777788889999988863      56788988888877766543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=87.39  E-value=1.9  Score=35.55  Aligned_cols=72  Identities=13%  Similarity=0.184  Sum_probs=55.0

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~  492 (530)
                      ++..|..-|...++.++..+|..|..+++.+..          .|...+.....++.+..+... .++.|++++..+|+.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~----------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~  122 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK----------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE  122 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH----------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH----------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            455666777888999999999999999987533          255566666667777666544 789999999999998


Q ss_pred             hCC
Q 009636          493 YWL  495 (530)
Q Consensus       493 ~~~  495 (530)
                      |-.
T Consensus       123 W~~  125 (163)
T 1x5b_A          123 WSE  125 (163)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=86.83  E-value=2.4  Score=34.24  Aligned_cols=71  Identities=8%  Similarity=-0.098  Sum_probs=58.0

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHH
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENIL  441 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll  441 (530)
                      ++..|.+-+.+.++.++..|+..|-.++.++...+...+.+..++..|..++..      .++.|+..++..+...-
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            456677778889999999999999999999887777887888899999998864      36788888777666544

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=86.77  E-value=7.9  Score=35.14  Aligned_cols=149  Identities=12%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             HHHHHHhhcCC------ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636          245 LPALAHLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       245 l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~  317 (530)
                      +..+..++.+.      |.+....++..|..++..-....+.+. +..++..|+ +.....+.+++.|.++|+...+.++
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP  102 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP  102 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence            33444455544      445677788888888766544444333 334444444 3344566789999999999999999


Q ss_pred             hhhHHHhhc--CchHHHHHhhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009636          318 MQTQCVIEY--QALPCLLNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK  387 (530)
Q Consensus       318 ~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~  387 (530)
                      .....+.+.  .++..+..-|..    .  ....+.+.-+.+|.-|...+..    + ....+..|.+++...  +..+|
T Consensus       103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k  177 (315)
T 3qml_C          103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQ  177 (315)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHH
Confidence            887777642  444444444322    1  1335667777777777765421    1 134567777777777  88999


Q ss_pred             HHHHHHHHHhhc
Q 009636          388 KEAAWAISNATS  399 (530)
Q Consensus       388 ~~a~~aL~nl~~  399 (530)
                      ..++..+..+..
T Consensus       178 ~Kvl~li~d~f~  189 (315)
T 3qml_C          178 IKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            999988887763

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=86.30  E-value=1.7  Score=34.74  Aligned_cols=72  Identities=13%  Similarity=0.212  Sum_probs=54.9

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      ++..|..-|...++.++..++..|..+++.+..          .|...+.....++.+..+....++.|++++..+++.+
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~----------~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W  112 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK----------IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW  112 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----------HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH----------HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            456666677788999999999999988876533          2455555566667777776678999999999999987


Q ss_pred             CC
Q 009636          494 WL  495 (530)
Q Consensus       494 ~~  495 (530)
                      -.
T Consensus       113 ~~  114 (140)
T 3ldz_A          113 TD  114 (140)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=85.33  E-value=0.7  Score=27.43  Aligned_cols=38  Identities=29%  Similarity=0.549  Sum_probs=26.0

Q ss_pred             HhhhhcCCC-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhh
Q 009636           11 SRRNKYKVA-VDADEGRRRREDNMVEIRKNKREESLQKKRR   50 (530)
Q Consensus        11 ~~~~~~k~~-~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~   50 (530)
                      +|...||+. ...++.. ||.+ -.+.-|++|-+.++..|+
T Consensus         2 PR~sqYK~k~~~~~q~~-rRr~-~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSE-RRRR-LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTH-HHHH-HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHH-HHHH-HHHHHHHHHHHHHHHhcC
Confidence            477789984 4444444 4444 578888899888887764

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=85.22  E-value=3.2  Score=34.45  Aligned_cols=72  Identities=15%  Similarity=0.198  Sum_probs=56.3

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..-+.+.++.++..+|..|..+++.+..          .|...+.....++.|..+..      ..+..|++++.
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~----------~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil  120 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR----------RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVI  120 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH----------HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence            456677777889999999999999999987543          25666766777788877754      35789999999


Q ss_pred             HHHHHhCC
Q 009636          488 KLLETYWL  495 (530)
Q Consensus       488 ~il~~~~~  495 (530)
                      .+|+.|-.
T Consensus       121 ~li~~W~~  128 (171)
T 1juq_A          121 ELLYSWTM  128 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=85.15  E-value=20  Score=31.88  Aligned_cols=99  Identities=9%  Similarity=0.080  Sum_probs=69.5

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009636           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (530)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  156 (530)
                      .+++..+....+.+...+...+.++... ++..   . ..+++.++.+..+.+ .++|...+..+...+....+....  
T Consensus        19 ~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~l---l-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~--   90 (257)
T 3gs3_A           19 DWCNELVIASPSTKCELLAKVQETVLGS-CAEL---A-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH--   90 (257)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGGG---H-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH--
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHhH---H-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3344333423368889999999977664 2321   1 335777888776666 899999999998888654444333  


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHhh
Q 009636          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNI  186 (530)
Q Consensus       157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl  186 (530)
                         .++.|..++.+.++.+...++.+.+++
T Consensus        91 ---~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           91 ---VINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             ---HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence               467888888888899998888877776

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=84.16  E-value=3.3  Score=33.45  Aligned_cols=72  Identities=15%  Similarity=0.199  Sum_probs=56.6

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..-+.+.++.++..++..|..+++.+..          .|...+....+++.|..+..      ..+++|++++.
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~----------~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil  118 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK----------RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKIL  118 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH----------HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH----------HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHH
Confidence            456666777789999999999999999877643          25666777777788877754      47899999999


Q ss_pred             HHHHHhCC
Q 009636          488 KLLETYWL  495 (530)
Q Consensus       488 ~il~~~~~  495 (530)
                      .+++.|-.
T Consensus       119 ~li~~W~~  126 (149)
T 3g2s_A          119 ELLYSWTV  126 (149)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998854

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=84.15  E-value=3.4  Score=33.39  Aligned_cols=73  Identities=11%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..-|.+.++.++..|+..|..+++.+..          .|...+.....++.|..+..      ..+++|++++.
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~----------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil  108 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE----------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVI  108 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHH
Confidence            456666777889999999999999999987533          26666777777888877754      25899999999


Q ss_pred             HHHHHhCCC
Q 009636          488 KLLETYWLD  496 (530)
Q Consensus       488 ~il~~~~~~  496 (530)
                      .+++.|-..
T Consensus       109 ~li~~W~~~  117 (148)
T 1mhq_A          109 EILFSWTVW  117 (148)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=83.93  E-value=7.9  Score=36.76  Aligned_cols=118  Identities=18%  Similarity=0.149  Sum_probs=81.3

Q ss_pred             hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhh
Q 009636          369 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK  448 (530)
Q Consensus       369 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~  448 (530)
                      .++++.++.+..+.+.++|+.++..|...+.. ..+...     .+++.|..+|.++++.++..++.+..++....-..-
T Consensus        62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i  135 (386)
T 3o2t_A           62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM  135 (386)
T ss_dssp             GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            36889999988888999999999999888763 223322     357788888888999999888888887764322211


Q ss_pred             hcCCCC---chhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          449 NLGNTD---VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       449 ~~~~~~---~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ......   .+.....+..  ..+.|..+..+.+..|+-.|.+.++++.
T Consensus       136 ~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          136 VKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             HHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            110100   1233444432  3456777788999999999999999853

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=83.89  E-value=2  Score=34.37  Aligned_cols=74  Identities=5%  Similarity=-0.024  Sum_probs=58.4

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      ++..+.+-+.+.++.++..|+..|-.++.++.......+.+..++..|..++...++.|...++..+...-...
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f  116 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF  116 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence            45667777888899999999999999999887777666666677888888887778889999888877665443

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=83.39  E-value=2.6  Score=35.01  Aligned_cols=71  Identities=8%  Similarity=-0.053  Sum_probs=56.7

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHH
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENIL  441 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll  441 (530)
                      ++..|.+-+.+.++.++..|+..|-.++.++...+...+.+..++..|+.++..      .++.|+..++..+...-
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  127 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  127 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            456777788889999999999999999998777777777778888888888863      35678888877766544

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=82.91  E-value=33  Score=32.56  Aligned_cols=88  Identities=10%  Similarity=0.126  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009636           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (530)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  167 (530)
                      +.+...+..+++++-.. ++.    .-..+++.++++-.+.+ .+++...+..|...+....+....     +++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLLK-----LIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            57888999999976543 332    22568999999988887 899999999999888755544332     46788888


Q ss_pred             hCCCCHHHHHHHHHHHHhh
Q 009636          168 LYSPSDDVREQAVWALGNI  186 (530)
Q Consensus       168 l~~~~~~i~~~a~~~L~nl  186 (530)
                      +.+.++.+...++.+.+++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            8888899998888888776

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=81.72  E-value=4.5  Score=43.99  Aligned_cols=186  Identities=13%  Similarity=0.059  Sum_probs=113.9

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC---CCchhHHHHHHHHhhh--hccCCCC
Q 009636          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLSN--FCRGKPQ  235 (530)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~---~~~~~~~~~a~~~L~~--L~~~~~~  235 (530)
                      +.-|+.+--+..++++..|-.+|......-+..+..     +++.+++.|..   ..+.+-.+.|+++|..  +... -.
T Consensus       135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~~  208 (997)
T 1vsy_5          135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-LM  208 (997)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-GG
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-Hh
Confidence            566777777888999999999999988766655555     57777877754   5566777788887762  2111 12


Q ss_pred             CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--------------------Ch----HHHHHH----------
Q 009636          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--------------------TN----DKIQAV----------  281 (530)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--------------------~~----~~~~~~----------  281 (530)
                      ........+++.|+.....++++++..+-.+...+...                    ++    ..+...          
T Consensus       209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~  288 (997)
T 1vsy_5          209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY  288 (997)
T ss_dssp             GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred             cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            23455567777777776666666555444332222210                    00    001100          


Q ss_pred             HH---hCcHHHHHHhh-CCCC--chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636          282 IE---AGVFPRLAEFL-MHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       282 ~~---~~~l~~L~~lL-~~~~--~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                      ..   .++...++.+. ....  |.....++..+.++....+.    .....++..+++.+.++ ++.+|+.|..++..+
T Consensus       289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i  363 (997)
T 1vsy_5          289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLST  363 (997)
T ss_dssp             HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence            00   13344444555 3345  88888888886666643331    12334677788888888 999999998887665


Q ss_pred             hc
Q 009636          356 TA  357 (530)
Q Consensus       356 ~~  357 (530)
                      ..
T Consensus       364 l~  365 (997)
T 1vsy_5          364 CN  365 (997)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=80.41  E-value=17  Score=32.35  Aligned_cols=117  Identities=13%  Similarity=0.145  Sum_probs=79.2

Q ss_pred             CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhh
Q 009636          370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN  449 (530)
Q Consensus       370 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~  449 (530)
                      ++++.++.+..+.+.++|+..+..+...+.. .++...     .+++.|..++.++++.+...++.+...+....-..-.
T Consensus        53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~  126 (257)
T 3gs3_A           53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC  126 (257)
T ss_dssp             HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3566777766667899999999999888753 223222     3577888889999999999999888888654322211


Q ss_pred             cCCCC---chhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          450 LGNTD---VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       450 ~~~~~---~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      .....   .+.....+.  ...+.|..+..+.+..|+-.|.+.++++.
T Consensus       127 ~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          127 SLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            11000   123344442  23466777788999999999999999854

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=80.13  E-value=3.3  Score=34.10  Aligned_cols=71  Identities=3%  Similarity=-0.040  Sum_probs=55.6

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHHHHHHHHHH
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENIL  441 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~al~~l~~ll  441 (530)
                      ++..|.+-|.+.++.++..|+..|-.++.++...+...+....+++.|..++.. .++.|+..++..+...-
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~  124 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS  124 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            455677778889999999999999999998877777777777788888787764 56788888777665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	530
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-134
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-93
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-45
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-15
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-11
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-20
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	0.002
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-10
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-09
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-10
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	3e-07
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	3e-04
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.004

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  397 bits (1021), Expect = e-134
 Identities = 265/500 (53%), Positives = 336/500 (67%), Gaps = 14/500 (2%)

Query: 12  RRNKYKVA--VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQN-------QQPLAND 62
           RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             +   +  
Sbjct: 6   RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 65

Query: 63  VNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV 122
            +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR V
Sbjct: 66  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 125

Query: 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
           EF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WA
Sbjct: 126 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 185

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQV 241
           LGN+AGDS   RD VL    + P+L  L    K S++R ATWTLSN CRGK PQP +  V
Sbjct: 186 LGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 244

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           S ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V
Sbjct: 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 304

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361
             PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN E
Sbjct: 305 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTE 363

Query: 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLC 419
           QIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLC
Sbjct: 364 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 423

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479
           DLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N
Sbjct: 424 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 483

Query: 480 AEIYEKSVKLLETYWLDDED 499
            +IYEK+ K++ETY+ ++ED
Sbjct: 484 DKIYEKAYKIIETYFGEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  289 bits (740), Expect = 2e-93
 Identities = 208/425 (48%), Positives = 278/425 (65%), Gaps = 11/425 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           FE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 195 DLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALA 249
           DLV+  G + PLLA L            LRN TWTLSN CR K   PP D V   LP L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369
           GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+  
Sbjct: 255 GNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 429
            ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 373

Query: 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL 489
           + V L+ + NI +  E        +    + MI++  GL+KIE+LQ H+N  +Y+ S+ L
Sbjct: 374 IQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 428

Query: 490 LETYW 494
           +E Y+
Sbjct: 429 IEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 8e-45
 Identities = 59/450 (13%), Positives = 123/450 (27%), Gaps = 70/450 (15%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
                        +I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--- 339
            +G+   L  ++ +   +           +    ++  +   E       L   + N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 340 ----------YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389
                         +              N +    +  ++ I   + L+  ++ D   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 390 AAWAISNATSGGTHEQI-----KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444
           A        +               + +  +  +  LL   +  +V      L N+ +  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 445 EAEKNLGNTDVNVF-----------------------------------TQMIDDAEGLE 469
              + +GN                                          +    +  L 
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 470 KIESL-QTHDNAEIYEKSVKLLETYWLDDE 498
            I +L ++  + +  E +  LL   W   E
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 5e-17
 Identities = 44/308 (14%), Positives = 94/308 (30%), Gaps = 28/308 (9%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 175 VR------EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ--------LNGQPKLSMLR 220
            R      E  +  L N++            Q       A          + +    M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQ 279
           N    L           +   S A+    +L+  +  +        AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 280 A-----VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
                  ++    P++A  L   +  V+      + N+          V+  Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 335 LLSGNYKKS-----IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD-IKK 388
           LL+ +   +     I   AC+TV N+ A   +  +    ++++  ++ L  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 389 EAAWAISN 396
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 6e-15
 Identities = 27/302 (8%), Positives = 69/302 (22%), Gaps = 18/302 (5%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
              A  AL  L   +                   L     + +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 320 TQCVIEYQALPCLLNLLSGNYK--------------KSIKKEACWTVSNITAGNREQIQA 365
            + +I          ++                     +   A   + N+++ +  +   
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 425
              + +I  L+A ++N     + +     +               +    + L       
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 426 DPRIVTV-CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK--IESLQTHDNAEI 482
                +  C     + +     +  L   + N             +  +  +        
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 483 YE 484
            E
Sbjct: 301 LE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 2e-13
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 16/237 (6%)

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202
            + +   +      +            + SD +              +P+    +     
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD------QVSPALPALAHLIHSND 256
           +   L  +    K + L      L N    K                 LP +A L+ S +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVG 310
            +V+      LS +S   +  +  V+   VFP +   L         S  +L  A  TV 
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367
           N++       +       L  ++NL   +      + A   +S++   ++E +Q V+
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM-WSSKE-LQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 3e-10
 Identities = 24/186 (12%), Positives = 54/186 (29%), Gaps = 14/186 (7%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR---- 114
              +    G     + +   +  +  +      E      + L+  +      + +    
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328

Query: 115 -SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL----- 168
               +P+    L +     +    A  L+N++         V+ +   P   +LL     
Sbjct: 329 KEKGLPQIARLL-QSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTG 385

Query: 169 -YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
             S S+D+   A + + N+    P+      S   L  ++              A   LS
Sbjct: 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

Query: 228 NFCRGK 233
           +    K
Sbjct: 446 DMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (243), Expect = 2e-22
 Identities = 49/283 (17%), Positives = 94/283 (33%), Gaps = 5/283 (1%)

Query: 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            A+P   KLL      V  +A   +  ++        ++ S   +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278
            R    TL N    +        S  +PAL  ++ S  D VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
            AV  AG   ++   L   +   L      +  +  G+      ++       L+N++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398
              + +       +  + +       A++EA  +  L   L +    + +   W + N  
Sbjct: 197 YTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 399 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441
              +    K   ++G +  L  LL   D  +VT     L N+ 
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.9 bits (239), Expect = 5e-22
 Identities = 74/481 (15%), Positives = 133/481 (27%), Gaps = 64/481 (13%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQL 133
           +P +   +   D  V  +      +L   E       ++RS  +V   V  +   +  + 
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
               A  L N++    E    +   G +P  VK+L SP D V   A+  L N+       
Sbjct: 77  ARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 194 RDLVLSQGGLVPLLAQ------------------------------------------LN 211
           +  V   GGL  ++A                                           + 
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271
                 +L   +  L          P    +  + AL   +      ++ +  W L  LS
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC 331
           D    +       G+   L + L     +V+  A   + N+   +      V +   +  
Sbjct: 256 DAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312

Query: 332 LLNLLSGNYKKSIKKE----ACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387
           L+  +     +    E    A   +++          AV     +  +V LL        
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372

Query: 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP---------RIVTVCLEGLE 438
            +A   +    +            QG I  L  LLV                   +EG+ 
Sbjct: 373 IKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431

Query: 439 NILKVGEAEKNLGNTDVNVFTQ-MIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD 497
               V      L     +V  + +I     +     L       I   +  +L     D 
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491

Query: 498 E 498
           E
Sbjct: 492 E 492

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (191), Expect = 5e-16
 Identities = 69/390 (17%), Positives = 120/390 (30%), Gaps = 30/390 (7%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L  MVA +   +       T   + L +         ++ SG     V  +    Y +L 
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
                 +  + S  S +   +++ G +      L  PS  + +  +W L N++  + +  
Sbjct: 204 -WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 262

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            +    G LV LL   +           +    N  + K          AL         
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322

Query: 255 NDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
            +D  E    A   L+           AV      P + + L  PS   LI A   +   
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLS---------------------GNYKKSIKKEACWT 351
           +         + E  A+P L+ LL                      G   + I +     
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442

Query: 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN-ATSGGTHEQIKFLV 410
           +  + A +      +   N I   V LL +   +I++ AA  +   A      E I    
Sbjct: 443 LHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI---E 498

Query: 411 IQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
            +G   PL +LL   +  + T     L  +
Sbjct: 499 AEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (159), Expect = 4e-12
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               +P  V+ L    +  L       + N+A   + H  +  + GA+P  V+LL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQ 411

Query: 174 DVR----------------------EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211
           D +                      E    AL  +A D    R ++      +PL  QL 
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNT-IPLFVQLL 469

Query: 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271
             P  ++ R A   L    + K      +   A   L  L+HS ++ V T A   L  +S
Sbjct: 470 YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (151), Expect = 4e-11
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
             +     +P FV+ LL      +Q  AA  L  +A    E  + +   GA     +LL+
Sbjct: 454 IVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLH 511

Query: 170 SPSDDVREQAVWALGNIA 187
           S ++ V   A   L  ++
Sbjct: 512 SRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.4 bits (215), Expect = 7e-20
 Identities = 38/259 (14%), Positives = 81/259 (31%), Gaps = 7/259 (2%)

Query: 103 IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162
           +E+      V+   + P   E     D  Q +  A   L ++              G   
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCENMDNAADFCQLSGMHL 62

Query: 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222
           +  + L + +  +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A
Sbjct: 63  LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 122

Query: 223 TWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + +S   R +               L   +     ++   + + L  L  G  +    +
Sbjct: 123 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 182

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-----YQALPCLLNLL 336
              G+  +L   +           L  + ++VT      +   E      + L     LL
Sbjct: 183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 242

Query: 337 SGNYKKSIKKEACWTVSNI 355
             + +   + E C  +   
Sbjct: 243 QQHEEYQEELEFCEKLLQT 261

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 2/118 (1%)

Query: 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA-LLENAEF 384
            Q +P           +  ++ A   ++++   N +      + + +  LV   LE    
Sbjct: 15  SQPMPPTAGEAEQAADQQEREGALELLADL-CENMDNAADFCQLSGMHLLVGRYLEAGAA 73

Query: 385 DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442
            ++  AA  I   +      Q + L +    K L  L       +    L  +  +++
Sbjct: 74  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 131

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 2e-11
 Identities = 55/383 (14%), Positives = 121/383 (31%), Gaps = 22/383 (5%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              +F A   L       S       +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPAL 248
            + ++  +    +V  L       K  +   ++  L       P         +     +
Sbjct: 74  SKVKEYQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 249 AHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
              + S      D  V  +A   ++ +       +     + +   L   L  P  +V  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
             +  +G++V          ++   +  LL+ LS N   S  +     ++ I+     +I
Sbjct: 191 RTIIALGHLVMS--CGNIVFVDL--IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL--VIQGCIKPLCD- 420
              +E  II  +V      + ++++    A  +       E    +  +I  C+K L   
Sbjct: 247 GEYLE-KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 305

Query: 421 -LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479
                 D       ++          ++    + D   +      A+ L+ + S +    
Sbjct: 306 PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 365

Query: 480 AEIYEKSVKLLETYWLDDEDETM 502
            E Y+     L + + + E+   
Sbjct: 366 PEFYKTVSPALISRFKEREENVK 388

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 1e-09
 Identities = 34/248 (13%), Positives = 80/248 (32%), Gaps = 25/248 (10%)

Query: 109  IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
              +   + V     +         ++  A  +L  +      H  +        + ++  
Sbjct: 807  CPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH----HIDLSGQLELKSVILEAF 862

Query: 169  YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-LRNATWTLS 227
             SPS++V+  A +ALG+I+  +            L  +L ++  QPK    L ++   + 
Sbjct: 863  SSPSEEVKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEII 914

Query: 228  NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287
            +        P+  V      L       ++         L         K+  +    + 
Sbjct: 915  SSASVVGLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLL 964

Query: 288  PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347
            PRL  +L+  S       +  V   ++        +++   +   L  L      ++++ 
Sbjct: 965  PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP-DLNVRRV 1022

Query: 348  ACWTVSNI 355
            A  T ++ 
Sbjct: 1023 ALVTFNSA 1030

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 10/137 (7%)

Query: 125  LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
                     +   A  L  +     E          +P     L S S   R   V A+ 
Sbjct: 936  HCECAEEGTRNVVAECLGKLTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVK 987

Query: 185  NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
                D P+  D +L     +    +    P L++ R A  T ++    KP    D +   
Sbjct: 988  FTISDHPQPIDPLLKN--CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045

Query: 245  LPALAHLIHSNDDEVLT 261
            LP L +      + +  
Sbjct: 1046 LPHLYNETKVRKELIRE 1062

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 4e-10
 Identities = 48/287 (16%), Positives = 84/287 (29%), Gaps = 29/287 (10%)

Query: 75  LPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           L  ++ G+   +    V+   T      L   ++   +E  R  ++    E     D  +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231

Query: 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192
           ++  A   L  I S   ++ +  +      I ++ + S  D+V  Q +    N+  +   
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291

Query: 193 C---RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-------------- 235
                     QG      ++   +  L  L                              
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 351

Query: 236 ------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289
                    D V   LP +   I + D      A  A   + +G        +     P 
Sbjct: 352 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 411

Query: 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
           L E +  PS  V   A  TVG I    ++  +  I    L  LL  L
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCL 455

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 49/312 (15%), Positives = 93/312 (29%), Gaps = 19/312 (6%)

Query: 84  SNDSGVQYECTTQFRKLLS---IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWA 140
           S D   +       +  +          + + I+S  +       + +  P ++      
Sbjct: 57  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 111

Query: 141 LTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
           +T IAS              +P    LL S   +  E A  AL  I  DS    D  +  
Sbjct: 112 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 167

Query: 201 GG---LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
                ++P   Q        +  +A   ++ F   + Q     +      L  L    + 
Sbjct: 168 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EV  + C AL  L +   D++   +   +   + +       +V   AL      +T  +
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAE 283

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377
                 +  + LP L+ +L    K S                    +  I          
Sbjct: 284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTV 343

Query: 378 LLENAEFDIKKE 389
             ++ E  I++E
Sbjct: 344 AQQHDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 43/378 (11%), Positives = 107/378 (28%), Gaps = 25/378 (6%)

Query: 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA--VPIFVKLL 168
            V R  ++P  +  L    +          +  + +      + +I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
                 VR    W L   A            +  +  LL ++    K  +   A    + 
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFAT 504

Query: 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVF 287
                       ++  L  L         + L     A+  L+D     + +      + 
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 564

Query: 288 PRLAEFL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL------------- 332
           P L +    +      L P L  + ++ T          E     C+             
Sbjct: 565 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN 624

Query: 333 --LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFDIKKE 389
                      K     A   +S +  G    I+ ++  +NI+  +   +++   ++++ 
Sbjct: 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 684

Query: 390 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI-LKVGEAEK 448
           +   + + T          +     +  L   L      +       +  I +++G   +
Sbjct: 685 SFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ 742

Query: 449 NLGNTDVNVFTQMIDDAE 466
                 ++   ++I+   
Sbjct: 743 PYIPMVLHQLVEIINRPN 760

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 16/180 (8%)

Query: 92  ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151
                    L+      IE+++    +   +   +++  P+++  +   L ++     +H
Sbjct: 640 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 699

Query: 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA---GD--SPRCRDLVLSQGGLVPL 206
            K  I    +PI    L      V   A WA+G I+   G    P    ++     LV +
Sbjct: 700 VKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL---HQLVEI 755

Query: 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQ---PPFDQVSPALPALAHLIHSNDDEVLTDA 263
           +         ++L N   T+       PQ   P   Q          L +  D+E    A
Sbjct: 756 IN--RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW--CTSLRNIRDNEEKDSA 811

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 28/307 (9%), Positives = 68/307 (22%), Gaps = 47/307 (15%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
           ++   L +  +    +E+ R          LL +     +  +A  L             
Sbjct: 7   SKEYGLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG--------- 47

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                AV + ++     +   R+   + LG I                   L        
Sbjct: 48  --GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDK 99

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACW-------AL 267
              +   A  + +  C+  P      V  +         +                   L
Sbjct: 100 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPL 159

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327
                   +       A                 +         +     +      + +
Sbjct: 160 LINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 219

Query: 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387
            L  L + L    K ++  +       +  G++  +  +           L +  + +I 
Sbjct: 220 VLSVLCDELK---KNTVYDDIIEAAGEL--GDKTLLPVLDT--------MLYKFDDNEII 266

Query: 388 KEAAWAI 394
             A   +
Sbjct: 267 TSAIDKL 273

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 13/149 (8%)

Query: 125 LLREDYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
            L +    ++  A   L  +    G       +I     P  + +   P+   R   ++ 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEWAHATII-----PKVLAMSGDPNYLHRMTTLFC 503

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242
           +  ++    +  D+      ++P + ++ G P  ++  N   +L                
Sbjct: 504 INVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE- 558

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLS 271
              P L  L    D +V   A  AL+ LS
Sbjct: 559 -VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 12/176 (6%)

Query: 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           P  V+L       VR   +  +  +AG              L  L          ++   
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREA 460

Query: 222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
           AT  L        +         +P +  +    +        + ++ LS+     I   
Sbjct: 461 ATSNLKKLVEKFGKEWAHAT--IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--- 515

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
               + P +      P  +V     +++  I     +     ++ +  P L  L  
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQSEVKPILEKLTQ 568

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              +  L  +   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   L  +     +      +   ++P +  ++G P         + ++       Q   
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
            +    LP +  +       V  +   +L  +    ++     +++ V P L +      
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 299 PSVLIPALRTVGNI 312
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           +++    ++P  +  +  +    ++F  A +L  I       T   +     PI  KL  
Sbjct: 513 QDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQ 568

Query: 170 SPSDDVREQAVWALGNIA 187
               DV+  A  AL  ++
Sbjct: 569 DQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 26/186 (13%), Positives = 65/186 (34%), Gaps = 14/186 (7%)

Query: 25  GRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWS 84
           G R+   +++       E++  + R   ++    LA  +      +KL    + +A +  
Sbjct: 395 GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN--SLCMAWLVD 452

Query: 85  NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNI 144
           +   ++   T+  +KL+           I    +P+ +      +Y        + +  +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHATI----IPKVLAMSGDPNYLHRM-TTLFCINVL 507

Query: 145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV 204
           +    +    +     +P  +++   P  +VR     +L  I        D    Q  + 
Sbjct: 508 SEVCGQD---ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG----PILDNSTLQSEVK 560

Query: 205 PLLAQL 210
           P+L +L
Sbjct: 561 PILEKL 566

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 30/288 (10%), Positives = 86/288 (29%), Gaps = 45/288 (15%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-L 219
             +    + SP  ++R  +   L  ++ D+               L +Q+       +  
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEG 57

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
           R                       A   L + + S D              +     ++ 
Sbjct: 58  RIL---------------------AALTLKNELVSKDSVK-------TQQFAQRWITQVS 89

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
              +  +       L+   P +   A + +  I   +          + +  +++     
Sbjct: 90  PEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP---ELMKIMVDNTGAE 146

Query: 340 YKKSIKKEACWTVSNITAGNREQIQAVIEA--NIIGPLVALLENAEF--DIKKEAAWAIS 395
             +++K+ +   +  +      Q QA++ +  NI+  +V   ++ E    ++  A  A++
Sbjct: 147 QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALA 206

Query: 396 NATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443
           ++     +   +       ++ +C+     D  +       L  I+  
Sbjct: 207 DSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 34/142 (23%)

Query: 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185
           + ++   ++ + + AL+ +               A    ++ L +    +R  A W +GN
Sbjct: 1   MADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245
              +              V  L +L       +   A  +L                   
Sbjct: 49  FQDERA------------VEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVR 86

Query: 246 PALAHLIHSNDDEVLTDACWAL 267
            A+  L  +        A   L
Sbjct: 87  AAMEKLAETGTGFARKVAVNYL 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	530
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.74
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.66
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.65
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.53
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.45
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.41
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.39
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.38
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.29
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.27
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.1
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.06
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.0
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.92
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.9
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.72
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.56
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.32
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.22
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.28
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.76
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.73
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.44
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.27
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.76
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.4
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.03
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.83
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	92.09
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	89.52
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	85.22
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	84.43
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	81.08

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-61  Score=497.48  Aligned_cols=490  Identities=54%  Similarity=0.828  Sum_probs=426.6

Q ss_pred             CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccC-------CCCCchhhhcCCHHHH
Q 009636            8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND-------VNAPGTAKKLENLPVM   78 (530)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l   78 (530)
                      .+++|++.||+ + ++++|+||||+++.++|||+||++.++|||+.........+..       .......+..+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            57899999999 5 5999999999999999999999999999997543222110000       0111122234678999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009636           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      +..+.+++.+.+..|+..++++++....++++.+++.|++|.|+++++.+.++.++..|+|+|++++.+++.....+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999999887788899999999999999999876558899999999999999889999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009636          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (530)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~  237 (530)
                      |+++.++.+|.+++.++++.|+|+|+||+.+++.++..+...|++++++.++ .+.+..+++.++|++++++... +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6777889999999999999876 5556


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~  317 (530)
                      .....+++|.+..++.+.|++++..++|++.+++....+....+++.|+++.++.++.++++.++..++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999888888889999999999999999999999999999999999998


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      .....+++.|+++.+..++.++ ++.+++.++|+|+|++.+++.....+++.|+++.++.++.+++++++.+|+|+|.|+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            8888899999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCC--CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh
Q 009636          398 TSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ  475 (530)
Q Consensus       398 ~~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~  475 (530)
                      +..+  .++.+.++++.|+++.|+++|+..|++++..++++|.+++..++......+...+++...|+++||+++|+.|+
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq  479 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ  479 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG
T ss_pred             HhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHH
Confidence            9754  35778899999999999999999999999999999999998876644332234678999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCCC
Q 009636          476 THDNAEIYEKSVKLLETYWLDDED  499 (530)
Q Consensus       476 ~~~~~~v~~~a~~il~~~~~~~~~  499 (530)
                      +|++++|+++|..||++||++++|
T Consensus       480 ~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         480 QNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             GCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcCC
Confidence            999999999999999999987664

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9e-47  Score=378.94  Aligned_cols=417  Identities=50%  Similarity=0.829  Sum_probs=384.8

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.+++.+++++++.+..|+.+++++++...++.++.+++.|++|.|+++|++.+++.++..|+++|.+++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            58999999999999999999999999999876677788999999999999999766558999999999999999888999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhh
Q 009636          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSN  228 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~  228 (530)
                      ..+++.|+++.|+.+|.+++..+++.|+|+|+|++.+.+..+..+...|+++.++.++....    .....+.++|++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999989999999999999999995332    23567889999999


Q ss_pred             hccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHH
Q 009636          229 FCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (530)
Q Consensus       229 L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~  307 (530)
                      ++... +........+++|.+..++.+++++++..++|++++++..+......+...|+++.++.++.++++.++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99987 44455567889999999999999999999999999999888888888888999999999999999999999999


Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      ++++++.+++.....+++.|+++.+..++.+. ++.++..|+|+|+|++.++.+....+.+.|+++.++.++.+++++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999998888888899999999999999998 99999999999999999989999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhcc
Q 009636          388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG  467 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~  467 (530)
                      ..|+|+|.|++..++.+....+.+.|+++.|+++++..+++++..++++|.+++..++...     ..+.+...+++.||
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-----~~~~~~~~~~~~~~  406 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGG  406 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHcCC
Confidence            9999999999998888999999999999999999999999999999999999998876543     35678999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          468 LEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       468 ~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ++.|+.|++|+|++|++.|.++|++||.
T Consensus       407 ~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         407 LDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-32  Score=280.21  Aligned_cols=366  Identities=24%  Similarity=0.338  Sum_probs=321.6

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.+|.|+..+++ .++.++..|+++|.++++.. ......+.+.|++|.++.+|.+++ .+++..|+|+|+|++..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            689999999985 46779999999999998764 445667789999999999999988 899999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+...|+++.|+.++.+.+..++..++|+|.|++.............++++.++.++ .+.+.+++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999977655555556678899999999 77889999999999999998


Q ss_pred             CCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636          232 GKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       232 ~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~  310 (530)
                      ..+. .......++++.++.++.+++..+...++.++++++...+.....+.+.|+++.+..++.++++.++..++++++
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            7532 233445789999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      |++.+++.....+++.|+++.++.++.++ +..++.+|+|+|+|++.+   .++.+..+++.|+++.|+.++...+.++.
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~  434 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  434 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            99999988888899999999999999998 899999999999999862   45678889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCC----------CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636          388 KEAAWAISNATSGG----------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       388 ~~a~~aL~nl~~~~----------~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~  442 (530)
                      ..++.+|.++...+          .......+.+.|+++.|..+..+++.++...|...|...+.
T Consensus       435 ~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~  499 (503)
T d1wa5b_         435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG  499 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            99999999987422          12344556788999999888888999999998887776653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-32  Score=270.59  Aligned_cols=365  Identities=25%  Similarity=0.378  Sum_probs=318.4

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.+|.|++.|++ +++++|..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+++|++++.++++.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHH
Confidence            789999999975 56789999999999998664 456778889999999999999888 999999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009636          152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L  226 (530)
                      +..+...|+++.++.++...+     ......++|++.+++.............++++.++.++ .+.+++++..++|++
T Consensus       134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l  212 (434)
T d1q1sc_         134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  212 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhh
Confidence            999999999999999997643     34567789999999987765555555667888898888 788899999999999


Q ss_pred             hhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009636          227 SNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       227 ~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a  305 (530)
                      .+++...+. .......++++.++.++.+++..++..+++++.+++...+.....+++.|+++.++.++.+.++.++..+
T Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a  292 (434)
T d1q1sc_         213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  292 (434)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             cccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence            999987532 2233457899999999999999999999999999998888878888999999999999999999999999


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      ++++++++.........+.+.|+++.++.++.++ ++.++..|+|+|+|++. ++.+.+..+.+.|+++.|+.++.+.++
T Consensus       293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~  371 (434)
T d1q1sc_         293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  371 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCH
T ss_pred             HHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence            9999999998888888888999999999999998 99999999999999987 577888889999999999999999999


Q ss_pred             hHHHHHHHHHHHhhc-----CCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636          385 DIKKEAAWAISNATS-----GGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~-----~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll  441 (530)
                      +++..++++|.++..     ...+.....+.+.|+++.|-.+..+++++++..+...|.+.+
T Consensus       372 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         372 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            999999999999974     223345556678899999989989999999999998887653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-30  Score=266.76  Aligned_cols=400  Identities=18%  Similarity=0.200  Sum_probs=342.5

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.++..|.+++++++..|+++|.+++... ......+.+.|++|.|+.+|++++ +.++..++++|.+++..+.+.+
T Consensus       101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~  178 (529)
T d1jdha_         101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHH
Confidence            67999999999999999999999999998764 445566778999999999999988 9999999999999999888889


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+...|+++.|+.++.. +...++..+++++.+++.+. ..+..+.+.|++++|+.++ .+.+..+...+++++.+++.
T Consensus       179 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~  256 (529)
T d1jdha_         179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhccc
Confidence            999999999999999965 55789999999999998754 4788889999999999999 77889999999999999986


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC--CCCchhHHHHHHHH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTV  309 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~~~~al~~L  309 (530)
                      ...  ......++++.|+.++.+++..++..+++++++++..++.....+.+.++++.++..+.  .+.+.++..+++++
T Consensus       257 ~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         257 AAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence            543  22334688999999999999999999999999999888888888889999999999884  45677899999999


Q ss_pred             hHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch--
Q 009636          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF--  384 (530)
Q Consensus       310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--  384 (530)
                      ++++.....   ....+...+.++.++.++..+.+..++..+++++.|++.. ++....+.+.|+++.|++++.+.+.  
T Consensus       335 ~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~  413 (529)
T d1jdha_         335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHHH
Confidence            999976543   2334557899999999998874567889999999999875 4566778899999999999975533  


Q ss_pred             --------------------hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          385 --------------------DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       385 --------------------~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                                          ++...++.++.+++.  .+..+..+.+.|+++.|+.+|.++++.++..++++|.++....
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~  491 (529)
T d1jdha_         414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  491 (529)
T ss_dssp             C-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCh
Confidence                                456667778888876  4566777778899999999999999999999999999986543


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      +            ....+.+.|++..|.+|..++|++++..|..+|.+.
T Consensus       492 ~------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         492 E------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             H------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             h------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            2            267888999999999999999999999999988653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-30  Score=262.45  Aligned_cols=403  Identities=17%  Similarity=0.161  Sum_probs=338.6

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.++..|.+ ++++.+..|+.+|.++...  .+....+++.|++|.|+.+|.+++ +.++..|+++|.+++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            367899999975 6788999999999998643  566788899999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+.+.|+++.|+.+++++++.++..++++|.+++..++..+..+...|++++++.++.......++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            88888999999999999999999999999999999988888888899999999999999777778899999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      ...........++++.|..++.+++..++..+++++.+++......   ....|+++.|+.++.+++..++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            7655555666889999999999999999999999999998654322   1224788999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCH---HHHHHHHHhCcHHHHHHHHhcC-chhH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNR---EQIQAVIEANIIGPLVALLENA-EFDI  386 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~i~~L~~ll~~~-~~~v  386 (530)
                      ++.+++.....+.+.++++.++..+... ..+.++..++++|.|++....   .....+...+.++.|+.++..+ +..+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~  372 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence            9998888888888999999999988532 267889999999999997432   2344556789999999999776 4578


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh----------------------HHHHHHHHHHHHHHHhh
Q 009636          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP----------------------RIVTVCLEGLENILKVG  444 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~----------------------~~~~~al~~l~~ll~~~  444 (530)
                      +..+++++.|++..  ++....+.+.|+++.|+++|...+.                      +++..+..++..+....
T Consensus       373 ~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~  450 (529)
T d1jdha_         373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCH
Confidence            88999999999885  3566778899999999999864433                      45555556665554332


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .            .+..+.+.|+++.|..+..+++++++..|...+..+..
T Consensus       451 ~------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  489 (529)
T d1jdha_         451 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             H------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             H------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            2            25667789999999999999999999999999987643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-26  Score=228.72  Aligned_cols=367  Identities=18%  Similarity=0.194  Sum_probs=280.3

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +.||.|+++|++++ ++++..|+++|+++|.++++.+..+.+.|+||.|+++|++++++++..|+++|++|+.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46999999999999 99999999999999998999999999999999999999999999999999999999998888999


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh----------------cCCChhH
Q 009636          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----------------HSNDDEV  259 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll----------------~~~d~~v  259 (530)
                      .+.+.|+++.++.++....+..++..+++++.+++.......... ...++.++..+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-HHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHH-hcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            999999999999999777889999999999999998754333333 33334333322                3457889


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC------CchhHHHHHHHHhHhh--------------------
Q 009636          260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP------SPSVLIPALRTVGNIV--------------------  313 (530)
Q Consensus       260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~~~~~al~~L~nl~--------------------  313 (530)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+.+..                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999887666555555668888888887531      1111111111111100                    


Q ss_pred             ------------------------------cCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 009636          314 ------------------------------TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--  361 (530)
Q Consensus       314 ------------------------------~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  361 (530)
                                                    .........+...++++.+..++....++.++..+++++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          011112222334567788888887664788899999999999874322  


Q ss_pred             ---HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHH
Q 009636          362 ---QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTV  432 (530)
Q Consensus       362 ---~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~  432 (530)
                         ....+.+.|+++.|+.++.+++++++..+++++.|++..  ++....+ ..++++.++.+|..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               223344678999999999999999999999999999984  3444443 45678899988853      23568889


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCCC
Q 009636          433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~il~~~~~~~~  498 (530)
                      ++.+|.++....+.           .+..+.+.||++.|..+.. ++++.+++.|..+|.+.|...+
T Consensus       397 a~~~L~~l~~~~~~-----------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHhcCCHH-----------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            99999999865443           3677888999999999864 5688999999999999987543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-24  Score=213.46  Aligned_cols=362  Identities=15%  Similarity=0.165  Sum_probs=268.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+|.+++.|+++++++|..|+.+|.+++..+ ......+.+.|++|.|+++|++++ +.++..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            6899999999999999999999999997653 567888899999999999999888 99999999999999988899999


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh---------------cCCCchh
Q 009636          154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---------------NGQPKLS  217 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll---------------~~~~~~~  217 (530)
                      .+.+.|+++.|+.++.+ .++.++..++++|++++.+.. .+...... +++.++..+               ....+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999999865 678899999999999998765 33343433 334443332               1345788


Q ss_pred             HHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhcCC------ChhHHHHHHHHHHHhccC-----------------
Q 009636          218 MLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSN------DDEVLTDACWALSYLSDG-----------------  273 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~-----------------  273 (530)
                      ++..+++++.+++........ ....++++.++.++.+.      .......+...+......                 
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            999999999999877533222 22356778887776532      111111111111111000                 


Q ss_pred             ---------------------------------ChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhHhhcCCchh
Q 009636          274 ---------------------------------TNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       274 ---------------------------------~~~~~~~~~~~~~l~~L~~lL~~-~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                                                       .......+...++++.++.++.. .++.++..+.+++.+++......
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                             00000111222455666666654 45677888899999998755432


Q ss_pred             -----hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC------chhHHH
Q 009636          320 -----TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA------EFDIKK  388 (530)
Q Consensus       320 -----~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~  388 (530)
                           ...+.+.++++.|+.++.++ ++.++..++++++|++... ..... +..+.++.++.++...      +.+++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~-~~~~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-LLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-GGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhCh-hHHHH-HHHhhHHHHHHHHhccccCcCCcHHHHH
Confidence                 23345779999999999998 9999999999999998753 33333 4456889999988543      457999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHh
Q 009636          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKV  443 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~  443 (530)
                      .|+.+|.|++.. +++..+.+.+.|+++.|+.++.+. ++.++..|..+|.+|+..
T Consensus       396 ~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            999999999976 557888889999999999998765 678999999999998644

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.4e-19  Score=162.76  Aligned_cols=194  Identities=14%  Similarity=0.138  Sum_probs=173.9

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009636          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l  209 (530)
                      .+.+..|+.+|.+++. +.++...+...|+++.++. ++.+++++++..|+++|++++.+++..+..+...|+++.|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6788999999999997 6778888999999999886 6778999999999999999999999899999999999999999


Q ss_pred             hcCCCchhHHHHHHHHhhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009636          210 LNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (530)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  288 (530)
                      +....++.++..++|++++++.+.+. .......++++.|+.++.+.+..++..++++|.+++..+++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            97677889999999999999988743 33455688999999999999999999999999999988888888899999999


Q ss_pred             HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       289 ~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~  325 (530)
                      .|+.++.++++.++..|+++|++++..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999888776655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.2e-18  Score=155.56  Aligned_cols=230  Identities=17%  Similarity=0.157  Sum_probs=187.7

Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009636          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (530)
Q Consensus       254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L  332 (530)
                      ..+.+.+..++.+|.+++... +....+...|+++.++. ++.++++.++..|+++|++++.+++.....+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~-d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            346678888999999999654 45566888899998875 7888999999999999999999888888888899999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009636          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      +.++.+..++.++..++|+|++++.+++.....+...|+++.|+.++.+++..++..++++|.+++.. +++....+.+.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99997654788999999999999999999999999999999999999999999999999999999876 45677888899


Q ss_pred             CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHh-hhhccHHHHHHH-----hcCCCHHHHHHH
Q 009636          413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI-DDAEGLEKIESL-----QTHDNAEIYEKS  486 (530)
Q Consensus       413 ~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~l-----~~~~~~~v~~~a  486 (530)
                      |+++.|+.++++++++++..++++|.++....+....          ... .+.+....+..+     ......+..+.+
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~----------~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~  255 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR----------ECREPELGLEELLRHRCQLLQQHEEYQEELEFC  255 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH----------HHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHH----------HHHHhhhhHHHHHHHHHHhccchHHHHHHHHHH
Confidence            9999999999999999999999999999876544221          111 111222222222     123445566788


Q ss_pred             HHHHHHhCC
Q 009636          487 VKLLETYWL  495 (530)
Q Consensus       487 ~~il~~~~~  495 (530)
                      ..|++++|.
T Consensus       256 ~~ll~~~~~  264 (264)
T d1xqra1         256 EKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            889998884

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.2e-16  Score=159.93  Aligned_cols=378  Identities=11%  Similarity=0.135  Sum_probs=266.8

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +.+...++++++.++..|+.++..++...  +.  ......++|.+..++.+++ ..++..++.+|++++.....   ..
T Consensus       206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~--~~--~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~~~---~~  277 (588)
T d1b3ua_         206 PMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EI  277 (588)
T ss_dssp             HHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HH
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHhhccC--CH--HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHHhhh---hh
Confidence            34444445555555555555555554331  11  1112336778888887776 78888888888888752111   12


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      ....+++.+..++.+.+++++..++..++.++..-. .......-..+++.+...+ .+.+..++..++.++..++....
T Consensus       278 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~~  356 (588)
T d1b3ua_         278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG  356 (588)
T ss_dssp             HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC
T ss_pred             hhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhccc
Confidence            334568889999999999999999999998874322 2222222334666777777 77888999999988888764321


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~  314 (530)
                        .......++|.+..++.+++++++..++.++..+...-..  . .....+++.+..++.+.+|.++..++.+++.++.
T Consensus       357 --~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~  431 (588)
T d1b3ua_         357 --KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             --HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence              1234466789999999999999999988887776532211  1 1123567888999999999999999999998875


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHH
Q 009636          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA  393 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  393 (530)
                      ....   ..+...+.+.+..++.++ ...+|..|+++|+.++.. .++    .....+++.+..++.++++.+|..++.+
T Consensus       432 ~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~~  503 (588)
T d1b3ua_         432 QLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFC  503 (588)
T ss_dssp             HHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             HcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            3211   112334567788888888 899999999999999762 222    2234588899999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHH
Q 009636          394 ISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES  473 (530)
Q Consensus       394 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  473 (530)
                      +..+......+    .....+++.|..+++++.+.++..++++|..+....+...         +.     ......|..
T Consensus       504 l~~l~~~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---------~~-----~~i~~~l~~  565 (588)
T d1b3ua_         504 INVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---------LQ-----SEVKPILEK  565 (588)
T ss_dssp             HHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---------HH-----HHHHHHHHH
T ss_pred             HHHHHHHcChH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---------HH-----HHHHHHHHH
Confidence            99887643222    2344689999999999999999999999999876543311         12     223577888


Q ss_pred             HhcCCCHHHHHHHHHHHHHh
Q 009636          474 LQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       474 l~~~~~~~v~~~a~~il~~~  493 (530)
                      |+++++.+|+..|...++..
T Consensus       566 L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         566 LTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HTTCSSHHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-14  Score=149.00  Aligned_cols=381  Identities=12%  Similarity=0.084  Sum_probs=280.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.+.+.+.+.++.++..|+..+..++..-.    .......++|.+..++++++ +.++..|+.++..++...+..  
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~--  237 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH--
Confidence            35666777788999999999999999886532    12334567888889988888 899999999999988633221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                       .....+++.+..++.++++.++..++.+|++++....   .......+++.+..++ .+.+.+++..+++++..++...
T Consensus       238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHH
Confidence             1112367889999998999999999999999874322   1223345677788888 7888999999999999998775


Q ss_pred             CCCCh--hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636          234 PQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       234 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n  311 (530)
                      .....  .....++|.+...+.+.++.++..++.++..++..-..  . .....+++.+..++.+.++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            33322  34467889999999999999999988888776532111  1 1123578889999999999999998888877


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      +...-..   .-+...+++.+..++.+. ++.+|..++.++..++.. ..+.    +...+.+.+..++.+....||..|
T Consensus       390 ~~~~~~~---~~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A  461 (588)
T d1b3ua_         390 VNEVIGI---RQLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCH---HHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHhhcch---hhhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHH
Confidence            7642221   112235678888999888 999999999999988752 1111    122356777788888889999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009636          391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK  470 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  470 (530)
                      +++|+.++....++.    ....+++.+..++.+++...+..++.++..+....+...         +.     ...+..
T Consensus       462 ~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---------~~-----~~ilp~  523 (588)
T d1b3ua_         462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---------TT-----KHMLPT  523 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHTHHH
T ss_pred             HHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH---------HH-----HHHHHH
Confidence            999999987544332    233578899999999999999999999998887654321         11     234677


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          471 IESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       471 l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      +..+..++.+.|+..+.+.+..++.
T Consensus       524 ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         524 VLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            8888888889998888888877654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.5e-12  Score=138.61  Aligned_cols=395  Identities=14%  Similarity=0.186  Sum_probs=236.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +.+.+.+.++++..+..|+.++..++.+. .......+ ..++|.++..+.+++ +.+|..|+|+|+.++.........-
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            44445667889999999999999876442 11111111 235788899998888 9999999999999876221111111


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-
Q 009636          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (530)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-  233 (530)
                      .-..+++.++..+.++++.++..|+++|.+++.... .....+  ..+++.++..+ ...+......+..++..++... 
T Consensus       475 ~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~~~  551 (888)
T d1qbkb_         475 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVG  551 (888)
T ss_dssp             HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHG
T ss_pred             hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhhh
Confidence            224678889999988999999999999999984221 111111  12344455554 2222233333333333322110 


Q ss_pred             -CCCChhhhhchHHH-------------------------------------------HHHhhc----------------
Q 009636          234 -PQPPFDQVSPALPA-------------------------------------------LAHLIH----------------  253 (530)
Q Consensus       234 -~~~~~~~~~~~l~~-------------------------------------------L~~ll~----------------  253 (530)
                       ..........+++.                                           +...+.                
T Consensus       552 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  631 (888)
T d1qbkb_         552 HHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY  631 (888)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             ccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence             00000001111111                                           111110                


Q ss_pred             -CCChhHHHHHHHHHHHhccCChHHH-HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHH
Q 009636          254 -SNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC  331 (530)
Q Consensus       254 -~~d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~  331 (530)
                       ..+.++...++.++..++..-.... ..+....+++.+...+.+.++.++..|+.+++.++..........+ ..+++.
T Consensus       632 ~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~  710 (888)
T d1qbkb_         632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPI  710 (888)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHH
Confidence             1233444444444444442211111 2222345677888888899999999999999999876554432222 247778


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCc--hhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009636          332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE--FDIKKEAAWAISNATSGGTHEQIKFL  409 (530)
Q Consensus       332 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l  409 (530)
                      +...|.++ ...++..|+|+++.++....+.....+. .+++.|+.+++.++  ..++..++.+|+.++... ++.....
T Consensus       711 l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~-p~~~~~~  787 (888)
T d1qbkb_         711 LGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEVAPM  787 (888)
T ss_dssp             HHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHC-HHHHGGG
T ss_pred             HHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHC-HHHHHhh
Confidence            88888877 8899999999999998744343333332 47889999998763  559999999999998753 4443222


Q ss_pred             HHcCChHHHHhccCC-CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHH
Q 009636          410 VIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK  488 (530)
Q Consensus       410 ~~~~~i~~L~~lL~~-~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~  488 (530)
                      + ..+++.++..|.. .|..-...+..+++.++...+..-      ...+.. |     ++.+... ..+.++++.....
T Consensus       788 l-~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~------~~~l~~-~-----~~~i~~~-~~~~~~~~~~~~~  853 (888)
T d1qbkb_         788 L-QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV------IQDFIF-F-----CDAVASW-INPKDDLRDMFCK  853 (888)
T ss_dssp             G-GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGT------GGGHHH-H-----HHHHTTC-SSCCHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHH------HHHHHH-H-----HHHHHhc-CCCCHHHHHHHHH
Confidence            2 2356777666653 455567788999999998766422      111111 1     2233222 2366889999999


Q ss_pred             HHHHhC
Q 009636          489 LLETYW  494 (530)
Q Consensus       489 il~~~~  494 (530)
                      +|..|-
T Consensus       854 ~l~~~~  859 (888)
T d1qbkb_         854 ILHGFK  859 (888)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7e-12  Score=135.07  Aligned_cols=347  Identities=14%  Similarity=0.180  Sum_probs=220.8

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009636           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (530)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  166 (530)
                      +..+..|..++..+....+......     +++.+.+.+.+++ +..|..|+.+|+.++.+..+.....+. .+++.|+.
T Consensus       371 ~~~r~~a~~~L~~l~~~~~~~il~~-----~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~  443 (888)
T d1qbkb_         371 WNLRKCSAAALDVLANVYRDELLPH-----ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQ  443 (888)
T ss_dssp             CSSHHHHHHHSTTTTTTCCSSSHHH-----HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHhhHhhhhHHHHHHH-----HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHH
Confidence            3456667777766654432222222     3566667777777 899999999999999866544332222 35788889


Q ss_pred             hhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchH
Q 009636          167 LLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL  245 (530)
Q Consensus       167 ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l  245 (530)
                      .++++++.+|..++|+|+.++.... ...+. .-..+++.++..+ .+.++.++..++++|.+++.............++
T Consensus       444 ~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il  521 (888)
T d1qbkb_         444 CLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYIL  521 (888)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            9999999999999999999874221 11111 1234677788877 6778999999999999999765444444566777


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhccC------ChHHHHHHHH-------------------------------hCc--
Q 009636          246 PALAHLIHSNDDEVLTDACWALSYLSDG------TNDKIQAVIE-------------------------------AGV--  286 (530)
Q Consensus       246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~------~~~~~~~~~~-------------------------------~~~--  286 (530)
                      +.+...+...+......+..+++.++..      .......+..                               .++  
T Consensus       522 ~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         522 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            7787777766655544444444443311      1111111000                               000  


Q ss_pred             -----HHHHHHhh-----------------CCCCchhHHHHHHHHhHhhcCCchhhHHH-hhcCchHHHHHhhcCCCchh
Q 009636          287 -----FPRLAEFL-----------------MHPSPSVLIPALRTVGNIVTGDDMQTQCV-IEYQALPCLLNLLSGNYKKS  343 (530)
Q Consensus       287 -----l~~L~~lL-----------------~~~~~~~~~~al~~L~nl~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~~  343 (530)
                           ++.++.++                 ...+..+...++.+++.++.+-......+ ....+++.+...+.+. ++.
T Consensus       602 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~  680 (888)
T d1qbkb_         602 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPE  680 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChH
Confidence                 01111111                 01123344455555555554333222222 3456788888888888 899


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009636          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  423 (530)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~  423 (530)
                      +|..|..+++.++...+......++ .+++.++..+.+....++..|+|+++.++.....+...++  ..+++.|+.+++
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~--~~il~~L~~il~  757 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIIN  757 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHc
Confidence            9999999999998755554443333 3777888888888889999999999999875443332222  136778888887


Q ss_pred             CCC--hHHHHHHHHHHHHHHHhhhh
Q 009636          424 CPD--PRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       424 ~~~--~~~~~~al~~l~~ll~~~~~  446 (530)
                      .++  ..+..+++.+|+.+....+.
T Consensus       758 ~~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         758 RPNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHCHH
Confidence            543  45889999999999876654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.4e-11  Score=135.11  Aligned_cols=406  Identities=11%  Similarity=0.100  Sum_probs=264.6

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..+++.+++.|++.|+.|+..|.+.+..... ..+.-....+++.|+++|++++ +++|..|+.+|+.++..-++...
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~-~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhccc-ccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH
Confidence            357889999999999999999999988865321 1111112347899999999888 99999999999999875443221


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch------hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009636          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR------CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~------~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~  227 (530)
                          ..+++.|+..+.+++...+..+..+|..+...-+.      .... ....+++.+...+....+..++..++.++.
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~v~~~al~~l~  156 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  156 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                13567888888788888888888888776532211      1111 111244455555545667888889999998


Q ss_pred             hhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHH
Q 009636          228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPAL  306 (530)
Q Consensus       228 ~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~al  306 (530)
                      .+....+..-......+++.++..+.+++..++..++.+++.++......   .. ..+++.++..+. +.+...+..++
T Consensus       157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~  232 (1207)
T d1u6gc_         157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  232 (1207)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHH
Confidence            88776544444445678888999999999999999999999998654321   11 245566665553 45666777888


Q ss_pred             HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH----HHHHHHh-------------
Q 009636          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ----IQAVIEA-------------  369 (530)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~-------------  369 (530)
                      .+++.++...+..... .-..+++.+...+... +..+|..++.++..++...+..    ...++..             
T Consensus       233 ~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~  310 (1207)
T d1u6gc_         233 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNY  310 (1207)
T ss_dssp             HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHHcchhhHH-HHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhh
Confidence            8999888755433211 1246789999999988 8899999999998887643221    1111100             


Q ss_pred             -------------------CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHH
Q 009636          370 -------------------NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV  430 (530)
Q Consensus       370 -------------------~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  430 (530)
                                         ...+.......+..+.+|..++.+|..++.... +....+ -..+++.|...+...++.++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~-~~~~~~~L~~~l~d~~~~vr  388 (1207)
T d1u6gc_         311 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVK  388 (1207)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHH
T ss_pred             hhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHH-HHHHHHHHHHHhcCCchHHH
Confidence                               000111111223357899999999999987543 333332 23578999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCC-----CchhhHHHhhh--hccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          431 TVCLEGLENILKVGEAEKNLGNT-----DVNVFTQMIDD--AEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~-----~~~~~~~~l~~--~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ..++.++..++............     ..+.....+..  ...++.+.....+.+..++..+..++..+.
T Consensus       389 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~  459 (1207)
T d1u6gc_         389 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV  459 (1207)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            99999998887643221100000     00001111111  234566777778889999988888887654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=4.2e-10  Score=102.83  Aligned_cols=253  Identities=15%  Similarity=0.103  Sum_probs=188.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      ..+.|++.|.++++.++..|+..|..+..            ..+++.|+.++++++ +.++..|+++|+.+....... .
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~~-~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCE-D   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTH-H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccc-c
Confidence            56789999999999999999999987732            135899999999988 999999999999987632221 1


Q ss_pred             HHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636          154 VVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       154 ~~~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..     ++.+. .+++++++.++..++.+|++++...+....     ..++.+...+ .+.+..++..++.++..+.. 
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence            11     22333 345678999999999999999865543222     2455666666 67788898888888876543 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                               ...++.+..++...+..+...+..++..+......         ..+.+...+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence                     34567888888888888888888888877655432         334567778888999999999988876


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHH
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAA  391 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~  391 (530)
                      ..           ...++.|+..+.++   .+|..++++|+.+.  +         .+.++.|..++... +.+++..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~---------~~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--D---------KTLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--C---------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--C---------HHHHHHHHHHHccCCCHHHHHHHH
Confidence            42           34577888888744   58999999999884  2         24788888888764 788999998


Q ss_pred             HHHH
Q 009636          392 WAIS  395 (530)
Q Consensus       392 ~aL~  395 (530)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8873

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=4e-10  Score=102.98  Aligned_cols=256  Identities=15%  Similarity=0.133  Sum_probs=194.0

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (530)
                      ....+.|+++|++++ +.++..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            456778999999988 9999999999998754  2         2478999999999999999999999998643321 1


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      +.     .++.+...+..+.++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            11     344556655578899999999999999986532    2234567788888888889999888888776532  


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                               ...++.+..++...++.++..+..+++.+......         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     25567788888888988998888888877654432         344566777777 88999999999887


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHH
Q 009636          355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVC  433 (530)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~a  433 (530)
                      +..           ...++.|++.+.+  +.++..++++|+.+..            ...++.|..++.. +|..++..+
T Consensus       215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHH
Confidence            632           2467888888874  4689999999998843            1467788777765 577899988


Q ss_pred             HHHHH
Q 009636          434 LEGLE  438 (530)
Q Consensus       434 l~~l~  438 (530)
                      +++|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.5e-10  Score=107.99  Aligned_cols=390  Identities=11%  Similarity=0.065  Sum_probs=249.3

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHH-
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK-  153 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~-  153 (530)
                      -.+++.+.++|.+.+.+|-..|..+...+  +       .+.+..|...+.+++ ...+|..|+..|.+.......... 
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~   73 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVEN--L-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   73 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence            46677788999999999999999886531  1       234677778776543 467888898888887764322211 


Q ss_pred             HH----------HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHH
Q 009636          154 VV----------IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNA  222 (530)
Q Consensus       154 ~~----------~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a  222 (530)
                      ..          ....+.+.++..+.++++. +..++.+++.++......   -.-.+.++.++..+.. ..+...+..+
T Consensus        74 ~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          74 QYQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence            11          1123345566766665443 333445555544211000   0012357777777743 3456677888


Q ss_pred             HHHhhhhccCC-CCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhCCCC
Q 009636          223 TWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPS  298 (530)
Q Consensus       223 ~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~  298 (530)
                      +.++..++... +.........+++.+...+.++  +..++..++.++..+......... ......+.+.+..++.+++
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            99998888654 3333344567788888888754  467999999999998865443211 1222345677888888899


Q ss_pred             chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH--------------
Q 009636          299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ--------------  364 (530)
Q Consensus       299 ~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~--------------  364 (530)
                      +.++..++.++..++...+......+...+.+.+...+.+. ++.++..|+..+..++........              
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  308 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  308 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence            99999999999999876554332223334445556666666 888999999988888642211110              


Q ss_pred             ------HHHHhCcHHHHHHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009636          365 ------AVIEANIIGPLVALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT  431 (530)
Q Consensus       365 ------~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~  431 (530)
                            ......+++.+...+..       .+..++..|..++..++.....+....     +++.+...+.++++.++.
T Consensus       309 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~  383 (458)
T d1ibrb_         309 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRD  383 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHH
Confidence                  01112234555555432       234688889999888876443333333     466778888999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636          432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       432 ~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .++.+|+.+........         +...+  ...++.|..+.+++++.|+..|...+.++.+
T Consensus       384 aal~~l~~i~~~~~~~~---------~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         384 AAVMAFGCILEGPEPSQ---------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHTSSSSCTTT---------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHhH---------HHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999888765332111         11111  2346778888899999999999999988753

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4e-10  Score=110.77  Aligned_cols=362  Identities=14%  Similarity=0.088  Sum_probs=226.7

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHH-H----------HHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 009636           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIE-E----------VIRSGVVPRFVEFLLREDYPQLQFEAAWA  140 (530)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~-~----------~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~  140 (530)
                      .+..+...+.++  +..++..|+..|++.+... .+... .          -....+.+.+++.+.+++ +. +..++.+
T Consensus        35 ~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~-~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~  111 (458)
T d1ibrb_          35 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQC  111 (458)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-CchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHH
Confidence            345566666543  4678888999999888653 11111 1          112345556777777665 33 3344455


Q ss_pred             HHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchh
Q 009636          141 LTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLS  217 (530)
Q Consensus       141 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~  217 (530)
                      +..++......   -.-.++++.+...+.+  .+...+..++.+++.++.........-....+++.++..+.. +.+..
T Consensus       112 ~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~  188 (458)
T d1ibrb_         112 VAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  188 (458)
T ss_dssp             HHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHH
Confidence            55554411000   0012567888887765  556788889999998874432211111122256667777743 34678


Q ss_pred             HHHHHHHHhhhhccCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009636          218 MLRNATWTLSNFCRGKP--QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  295 (530)
                      ++..++.++..+.....  ...........+.+..++.+++++++..++.++..++..........+...+...+...+.
T Consensus       189 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~  268 (458)
T d1ibrb_         189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  268 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999887642  1222333456777888888899999999999999987654433222222233455566677


Q ss_pred             CCCchhHHHHHHHHhHhhcCCchhh--------------------HHHhhcCchHHHHHhhcCC------CchhHHHHHH
Q 009636          296 HPSPSVLIPALRTVGNIVTGDDMQT--------------------QCVIEYQALPCLLNLLSGN------YKKSIKKEAC  349 (530)
Q Consensus       296 ~~~~~~~~~al~~L~nl~~~~~~~~--------------------~~~~~~~~l~~L~~lL~~~------~~~~v~~~a~  349 (530)
                      +.+..++..++..+..++.......                    .......+.+.+...+...      .+..++..+.
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            7888888899988888764211110                    0011123345555554321      1345888899


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHH
Q 009636          350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI  429 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  429 (530)
                      .++..++...++..   + ..+++.+...+.++++.+|..|+.+|+.++.+...+..+.. -..+++.+..++.++++.+
T Consensus       349 ~~l~~l~~~~~~~~---~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~V  423 (458)
T d1ibrb_         349 VCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVV  423 (458)
T ss_dssp             HHHHHHHHHTTTTH---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHhccHhh---h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHH
Confidence            99888876322221   1 13566777888889999999999999999875433322211 1246888999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 009636          430 VTVCLEGLENILKVGEA  446 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~  446 (530)
                      +..|+++|+++....+.
T Consensus       424 R~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         424 RDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.3e-07  Score=100.00  Aligned_cols=394  Identities=12%  Similarity=0.061  Sum_probs=239.9

Q ss_pred             HHHH-HhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHH
Q 009636           76 PVMV-AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        76 ~~l~-~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      ..++ ..+.++|++++.+|-..|.++....  +       .+.+..|.+.+.+.+ +..+|..|+..|.|..........
T Consensus         7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~   77 (861)
T d2bpta1           7 AQLLENSILSPDQNIRLTSETQLKKLSNDN--F-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKT   77 (861)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC--H-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhh
Confidence            4444 4467899999999999998875431  1       235677888886543 468888898888887653321111


Q ss_pred             HH------------HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCCchhHHH
Q 009636          154 VV------------IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLR  220 (530)
Q Consensus       154 ~~------------~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~  220 (530)
                      ..            ....+-..++..+.++++.++..++.+++.++... |..+.    -..++.|+..+..+.+...+.
T Consensus        78 ~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~~~~~~  153 (861)
T d2bpta1          78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQPENVKR  153 (861)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSCHHHHH
T ss_pred             hhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCcHHHHH
Confidence            10            00122356777788889999999999999987321 11000    024666777774455667788


Q ss_pred             HHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhh
Q 009636          221 NATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFL  294 (530)
Q Consensus       221 ~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL  294 (530)
                      .++.++..++........   .....+++.++..+.+  .+..++..++.++.++...-..... ......+++.+...+
T Consensus       154 ~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  233 (861)
T d2bpta1         154 ASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT  233 (861)
T ss_dssp             HHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh
Confidence            899999999876533222   2233445555555543  3578999999999888765443221 112234667788889


Q ss_pred             CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH------------
Q 009636          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ------------  362 (530)
Q Consensus       295 ~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~------------  362 (530)
                      .++++.++..++.++..++...+......+..-+...+.....+. ++.++..++..+..++......            
T Consensus       234 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  312 (861)
T d2bpta1         234 QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPL  312 (861)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999999875544333222222223333444444 6777777766655543210000            


Q ss_pred             ---------HHH------------------------------------HHHhCcHHHHH----HHHhcCchhHHHHHHHH
Q 009636          363 ---------IQA------------------------------------VIEANIIGPLV----ALLENAEFDIKKEAAWA  393 (530)
Q Consensus       363 ---------~~~------------------------------------l~~~~~i~~L~----~ll~~~~~~v~~~a~~a  393 (530)
                               ...                                    .....+++.+.    ..+.+.++..+..++.+
T Consensus       313 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  392 (861)
T d2bpta1         313 QSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMA  392 (861)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHH
Confidence                     000                                    00112233333    23345577888889999


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHH
Q 009636          394 ISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES  473 (530)
Q Consensus       394 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  473 (530)
                      ++.++............ ..+++.+...+.++++.++..+++++..+..........    ...+...      +..+..
T Consensus       393 l~~i~~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~~~l------l~~l~~  461 (861)
T d2bpta1         393 FGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP----QQHLPGV------VQACLI  461 (861)
T ss_dssp             HHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT----TTTHHHH------HHHHHH
T ss_pred             HHHHHhhcchhhHHHHH-HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhh----HHhhhhh------hHHHHh
Confidence            99998876655544433 246888999999999999999999999998765432110    0001111      223332


Q ss_pred             HhcCCCHHHHHHHHHHHHHhCC
Q 009636          474 LQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       474 l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      . ...++.+...+...+..+..
T Consensus       462 ~-~~~~~~~~~~~~~~~~~l~~  482 (861)
T d2bpta1         462 G-LQDHPKVATNCSWTIINLVE  482 (861)
T ss_dssp             H-HTSCHHHHHHHHHHHHHHHH
T ss_pred             c-cccChHHHHHHHHHHHHHHH
Confidence            2 34566777766666655543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.6e-09  Score=114.64  Aligned_cols=356  Identities=12%  Similarity=0.092  Sum_probs=223.9

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      +++.+...+....++.++..|+.+|..+....+....... ..+++.++..+.+++..++..|+.+|+.++...+..   
T Consensus       131 l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---  206 (1207)
T d1u6gc_         131 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---  206 (1207)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---
Confidence            4555566565555588999999999888763221111000 134677777888889999999999999998654421   


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                      . -...+..++..+..+.+...++.++.++..+++..+..-......++|.+...+...+++++..++.++..+....+.
T Consensus       207 ~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         207 V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence            1 123567777776556666677778888888887654443345678899999999999999999999888887644332


Q ss_pred             HHHHHHHhCcHHHHHH-------------------------------------hhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636          277 KIQAVIEAGVFPRLAE-------------------------------------FLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       277 ~~~~~~~~~~l~~L~~-------------------------------------lL~~~~~~~~~~al~~L~nl~~~~~~~  319 (530)
                      ....... .+++.+..                                     ...+..|.++..++.++..++...++.
T Consensus       286 ~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~  364 (1207)
T d1u6gc_         286 EVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM  364 (1207)
T ss_dssp             CCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred             hhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence            1111110 11111111                                     122345788999999999998776655


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC---HH-------------HHHHHH--HhCcHHHHHHHHhc
Q 009636          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN---RE-------------QIQAVI--EANIIGPLVALLEN  381 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~---~~-------------~~~~l~--~~~~i~~L~~ll~~  381 (530)
                      ....+ ..+++.++..+.+. ++.+|..+..++..+....   ..             ....+.  -..+++.+...+.+
T Consensus       365 l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~  442 (1207)
T d1u6gc_         365 LPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE  442 (1207)
T ss_dssp             HHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC
T ss_pred             HHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcC
Confidence            43333 46889999999888 8899999998888776410   00             000111  12356777778888


Q ss_pred             CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhH
Q 009636          382 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT  459 (530)
Q Consensus       382 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~  459 (530)
                      .+..++..+..++..++.........++.  ..++.+...+...  ...++..++.++..++.......         +.
T Consensus       443 ~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~---------~~  511 (1207)
T d1u6gc_         443 KSVKTRQCCFNMLTELVNVLPGALTQHIP--VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV---------FH  511 (1207)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG---------GH
T ss_pred             CchhHHHHHHHHHHHHHHHcchHHHHhhH--hhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHH---------HH
Confidence            89999999999998887532211111111  2355566666543  44577788888888876543221         12


Q ss_pred             HHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          460 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       460 ~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      ..+  ......+.....++...+...|...+..+
T Consensus       512 ~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~l  543 (1207)
T d1u6gc_         512 PHV--QALVPPVVACVGDPFYKITSEALLVTQQL  543 (1207)
T ss_dssp             HHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHH--HhhhhhHHHHHccccHHHHHHHHHHHHHH
Confidence            222  22245555666777777777776665544

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1e-08  Score=108.94  Aligned_cols=392  Identities=11%  Similarity=0.134  Sum_probs=225.1

Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009636           80 AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (530)
Q Consensus        80 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g  159 (530)
                      ..+.+.++..+..|+..+..+.... ........-..+++.++..+.+++ +.++..++++++.++......   +....
T Consensus       376 ~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~~~~  450 (861)
T d2bpta1         376 QNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAES---IDPQQ  450 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGG---SCTTT
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhchh---hhhHH
Confidence            3455788889999999988887553 222222223457889999999888 999999999999988632211   11122


Q ss_pred             ChHHHHHhh---CCCCHHHHHHHHHHHHhhhCCC----c-hhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhc
Q 009636          160 AVPIFVKLL---YSPSDDVREQAVWALGNIAGDS----P-RCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       160 ~i~~L~~ll---~~~~~~i~~~a~~~L~nl~~~~----~-~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~  230 (530)
                      .++.++..+   ...++.+...+++++..++...    . ......  ...+..++.... ...+..++..+..++..+.
T Consensus       451 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i  528 (861)
T d2bpta1         451 HLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMV  528 (861)
T ss_dssp             THHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHH--hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            333333332   1256778888888888776321    1 111111  113444555443 3346678888888888887


Q ss_pred             cCCCCCChhhhhchHHHHHHhh----cCCC-----------hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009636          231 RGKPQPPFDQVSPALPALAHLI----HSND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (530)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll----~~~d-----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  295 (530)
                      ...+.........+.+.+...+    ....           ..++..++.++..+............ ..+++.+...+.
T Consensus       529 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l~  607 (861)
T d2bpta1         529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLE  607 (861)
T ss_dssp             HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhcc
Confidence            6654333333333444333333    2111           12333344444444322221111111 134566666665


Q ss_pred             C-CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHH
Q 009636          296 H-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGP  374 (530)
Q Consensus       296 ~-~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~  374 (530)
                      . .+..++..++.+++.++..........+ ..++|.+...+.+. ++.++..|+.+++.++............ .+++.
T Consensus       608 ~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l-~~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i~~~  684 (861)
T d2bpta1         608 KKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AMMNV  684 (861)
T ss_dssp             STTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HHHHH
Confidence            5 4566888899999998865443332222 35788999999988 8899999999999998754444433333 47888


Q ss_pred             HHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC----CCh-------HHHHHHHHHHHHHH
Q 009636          375 LVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC----PDP-------RIVTVCLEGLENIL  441 (530)
Q Consensus       375 L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----~~~-------~~~~~al~~l~~ll  441 (530)
                      |++.+.+.  +..++..++.+|+.++........+++-  .+++.+...+..    .+.       .++..++.++..++
T Consensus       685 L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~  762 (861)
T d2bpta1         685 LAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIV  762 (861)
T ss_dssp             HHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888765  5689999999999998643333333322  234444444432    222       35666777777666


Q ss_pred             HhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH----hcCCCHHHHHHHHHHHHHh
Q 009636          442 KVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL----QTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a~~il~~~  493 (530)
                      ........    ...++...+     ++.+..+    ..+.+.++...+..++-.+
T Consensus       763 ~~~~~~~~----~~~p~~~~i-----~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l  809 (861)
T d2bpta1         763 AGLHDKPE----ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDI  809 (861)
T ss_dssp             HHTTTCHH----HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHhcCCHH----HHHHHHHHH-----HHHHHHHHhCCccCCCHHHHHHHHHHHHHH
Confidence            53321110    122233322     2333333    2346777887777776543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.4e-07  Score=95.53  Aligned_cols=387  Identities=14%  Similarity=0.083  Sum_probs=239.8

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHH----------HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-hhhHH
Q 009636           85 NDSGVQYECTTQFRKLLSIERSPPIEE----------VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEHTK  153 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~----------~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~  153 (530)
                      .+..+|..|+..|++.+..........          -....+...+++.+.+++ . ++..++.+++.++... +... 
T Consensus        49 ~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~-~-~~~~~a~~i~~i~~~~~p~~~-  125 (876)
T d1qgra_          49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET-Y-RPSSASQCVAGIACAEIPVNQ-  125 (876)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC-S-SSCHHHHHHHHHHHHHGGGTC-
T ss_pred             CCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc-H-HHHHHHHHHHHHHHHHCCccc-
Confidence            346788899999998886531111111          123345667788887765 3 4455677777777521 1000 


Q ss_pred             HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhc
Q 009636          154 VVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~  230 (530)
                         =.++++.|++.+.++  +..++..++.+|+.++.+-....-.-....+++.++..+.. +.+..++..++.++.++.
T Consensus       126 ---Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~  202 (876)
T d1qgra_         126 ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL  202 (876)
T ss_dssp             ---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred             ---cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHH
Confidence               025688888888653  46788899999999875332111111112356667777643 346778888888888776


Q ss_pred             cCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636          231 RGKP--QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       231 ~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~  308 (530)
                      ....  .........+++.+...+.+++++++..++.++..++....+.....+...+...+...+.+....++..++..
T Consensus       203 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  282 (876)
T d1qgra_         203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF  282 (876)
T ss_dssp             GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            5531  11122234466777788888899999999999999886655544444444566667777788888888888887


Q ss_pred             HhHhhcCCchhh--------------------HHHhhcCchHHHHHhhcCC------CchhHHHHHHHHHHHHhcCCHHH
Q 009636          309 VGNIVTGDDMQT--------------------QCVIEYQALPCLLNLLSGN------YKKSIKKEACWTVSNITAGNREQ  362 (530)
Q Consensus       309 L~nl~~~~~~~~--------------------~~~~~~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~  362 (530)
                      +..++.......                    .......+++.+...+...      ....++..|..++..++...+..
T Consensus       283 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~  362 (876)
T d1qgra_         283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh
Confidence            777764221110                    0011123344555554322      13357888888887776532221


Q ss_pred             HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636          363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       363 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~  442 (530)
                      +   + ..+++.+...+.+.++..+..++.+++.+..+.......... ..+++.+...+.++++.++..+++++..++.
T Consensus       363 ~---~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         363 I---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             G---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             h---h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence            1   1 123455666677788999999999999998876655544432 3467888899999999999999999999987


Q ss_pred             hhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          443 VGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      .......     ...+..     ..+..+.... ++++.+...+...+..+
T Consensus       438 ~~~~~~~-----~~~~~~-----~~~~~l~~~l-~~~~~v~~~~~~~l~~l  477 (876)
T d1qgra_         438 LLPEAAI-----NDVYLA-----PLLQCLIEGL-SAEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HCGGGTS-----STTTHH-----HHHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred             Hcchhhh-----hHHHhh-----hHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence            7644221     001111     1123343332 45788888887777654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.5e-08  Score=106.11  Aligned_cols=356  Identities=13%  Similarity=0.084  Sum_probs=216.4

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCC-hhhHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGT-SEHTK  153 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~-~~~~~  153 (530)
                      ..++..+.+++. .+..++.++..++... -+.-.+   .+++|.|++.+.+++ .+.++..++.+|..++... ++...
T Consensus        93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~-~p~~~W---peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~  167 (876)
T d1qgra_          93 NYVLHTLGTETY-RPSSASQCVAGIACAE-IPVNQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ  167 (876)
T ss_dssp             HHHHHHTTTCCS-SSCHHHHHHHHHHHHH-GGGTCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG
T ss_pred             HHHHHHhcCCcH-HHHHHHHHHHHHHHHH-CCcccc---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            556666666554 3445667777666542 111011   357899999887654 4678888999999987622 22111


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636          154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       154 ~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      .. ...+++.++..+.+  ++..++..++.++.+........-. .....-+++.+...+ .++++.++..++.++..++
T Consensus       168 ~~-~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l~  245 (876)
T d1qgra_         168 DK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIM  245 (876)
T ss_dssp             GG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence            11 12457778888765  4578899999999887644322111 011111344445555 6788999999999999998


Q ss_pred             cCCCCCChhhh-hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH--------------------HHHHhCcHHH
Q 009636          231 RGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ--------------------AVIEAGVFPR  289 (530)
Q Consensus       231 ~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~--------------------~~~~~~~l~~  289 (530)
                      ...+....... ..+.+.+...+.+.++++...++..+..++........                    ......+++.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (876)
T d1qgra_         246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (876)
T ss_dssp             HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            76543333322 34555666777777888887777766666532111110                    0111133444


Q ss_pred             HHHhhCC-------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-HH
Q 009636          290 LAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-RE  361 (530)
Q Consensus       290 L~~lL~~-------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~  361 (530)
                      +...+..       .++.++..|..++..++.......   + ..+++.+...+.+. +...+..+++.++.+..+. ..
T Consensus       326 l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~  400 (876)
T d1qgra_         326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPS  400 (876)
T ss_dssp             HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHH
T ss_pred             hHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---h-hhhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHH
Confidence            4444433       234577777777777765332221   1 12455666677777 8889999999999998753 34


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636          362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll  441 (530)
                      ...... ..+++.++..+.++++.++..++|+++.++..-.........-..+++.+...+. .++.+...+++++..+.
T Consensus       401 ~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         401 QLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            333333 3578899999999999999999999999876321100000000113455555554 46788889999999887


Q ss_pred             Hhhh
Q 009636          442 KVGE  445 (530)
Q Consensus       442 ~~~~  445 (530)
                      ....
T Consensus       479 ~~~~  482 (876)
T d1qgra_         479 EAAY  482 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=3.3e-06  Score=79.54  Aligned_cols=349  Identities=11%  Similarity=0.112  Sum_probs=197.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH---HHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHG--AVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~---~~~~~g--~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~  191 (530)
                      .+..++++|.....+++....+..+..+...++....   .+....  .-+.+...+..++.-+...+...+..++....
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~  154 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  154 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence            4667777777655466666666666666654432211   111111  12345555655666667777777787876554


Q ss_pred             hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh--hhhchHHHHHHhhcC---------------
Q 009636          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPALAHLIHS---------------  254 (530)
Q Consensus       192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~~l~~L~~ll~~---------------  254 (530)
                      ......-...-...++..+....+......++.++..+.+.++.+...  .....++.++..+..               
T Consensus       155 ~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~  234 (477)
T d1ho8a_         155 HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNS  234 (477)
T ss_dssp             CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------------
T ss_pred             cccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccC
Confidence            322211111112233334446667778888888888888775433321  123344444444431               


Q ss_pred             --CChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCch-----hhHHHh
Q 009636          255 --NDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDM-----QTQCVI  324 (530)
Q Consensus       255 --~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~~~~~-----~~~~~~  324 (530)
                        .+..++..++.+++-++...+ ....+.+.  +.++.++.++. ....++.+-++.++.|++.....     ....++
T Consensus       235 ~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v  313 (477)
T d1ho8a_         235 NHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLL  313 (477)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence              124678889999999986543 34445543  34778888875 45788999999999999875332     123345


Q ss_pred             hcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC----chhHHHHHHHHHHHhhc
Q 009636          325 EYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA----EFDIKKEAAWAISNATS  399 (530)
Q Consensus       325 ~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~~v~~~a~~aL~nl~~  399 (530)
                      ..++++.+-.+..... ++++....- .|.....   +.++.+-  .+=...-++ .++    +|.=+.+..|- -|.  
T Consensus       314 ~~~~l~~l~~L~~r~~~Dedl~edl~-~L~~~L~---~~~k~lT--sfd~Y~~Ev-~Sg~L~WSP~H~se~FW~-EN~--  383 (477)
T d1ho8a_         314 LGNALPTVQSLSERKYSDEELRQDIS-NLKEILE---NEYQELT--SFDEYVAEL-DSKLLCWSPPHVDNGFWS-DNI--  383 (477)
T ss_dssp             HHCHHHHHHHHHSSCCSSHHHHHHHH-HHHHHHH---HHHHTCC--HHHHHHHHH-HHTCCCCCGGGGCHHHHH-HHS--
T ss_pred             HcchhHHHHHHhcCCCCCHHHHHHHH-HHHHHHH---HHHHhcC--cHHHHHHHH-hcCCCCCCCCcCChhHHH-HHH--
Confidence            6666665444333221 444433221 1111111   0000000  000011111 111    11111111221 111  


Q ss_pred             CCCHHHHHHHHHc--CChHHHHhccC----------CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhcc
Q 009636          400 GGTHEQIKFLVIQ--GCIKPLCDLLV----------CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG  467 (530)
Q Consensus       400 ~~~~~~~~~l~~~--~~i~~L~~lL~----------~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~  467 (530)
                             ..|-+.  .++..|+.+|+          +.|+.+...|+.=++.+++..+.           .+..++..|+
T Consensus       384 -------~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~-----------gr~il~~lg~  445 (477)
T d1ho8a_         384 -------DEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-----------SIDVLDKTGG  445 (477)
T ss_dssp             -------GGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-----------HHHHHHHHSH
T ss_pred             -------HhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc-----------hhHHHHHcCc
Confidence                   111111  24778888885          35778888999999999998876           3777889999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636          468 LEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       468 ~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      -+.+.+|++|+|++|+..|...++++.
T Consensus       446 K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         446 KADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999998864

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=1.4e-06  Score=82.07  Aligned_cols=277  Identities=13%  Similarity=0.097  Sum_probs=178.2

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      +.+...+.+++.-....+...+..+++.. .......- .......+-.+...++ ...+..++.++..+.. .+..|..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHH
Confidence            44455566666667777777777777653 22222111 1112233333445555 7888889999999988 6888877


Q ss_pred             HHh--CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHhhhCCCchhhhhHhhc--CChHHHHHhhcCC
Q 009636          155 VID--HGAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQ  213 (530)
Q Consensus       155 ~~~--~g~i~~L~~ll~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~Ll~ll~~~  213 (530)
                      +..  ...++.|+..|..                 ....+...++.+++-++.+.. ....+...  +.++.++.++..+
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhh
Confidence            654  2345555555522                 124678889999999886554 44444443  3488888888888


Q ss_pred             CchhHHHHHHHHhhhhccCCCCCC------hhhhhchHHHHHHhhcC--CChhHHHHHHHHHHH-------hccC-----
Q 009636          214 PKLSMLRNATWTLSNFCRGKPQPP------FDQVSPALPALAHLIHS--NDDEVLTDACWALSY-------LSDG-----  273 (530)
Q Consensus       214 ~~~~~~~~a~~~L~~L~~~~~~~~------~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~-------l~~~-----  273 (530)
                      ..+.+.+.++.++.|++.......      .....++++.+..+...  .|+++..+.-..-..       ++..     
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~  360 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA  360 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            899999999999999997642221      12223455554444332  367765553222111       1110     


Q ss_pred             ---------ChHHH-HHHHHh----------CcHHHHHHhhC----------CCCchhHHHHHHHHhHhhcCCchhhHHH
Q 009636          274 ---------TNDKI-QAVIEA----------GVFPRLAEFLM----------HPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (530)
Q Consensus       274 ---------~~~~~-~~~~~~----------~~l~~L~~lL~----------~~~~~~~~~al~~L~nl~~~~~~~~~~~  323 (530)
                               ++... ..+...          .++..|+.+|.          +.++.+..-||.=+|.++...|..+..+
T Consensus       361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il  440 (477)
T d1ho8a_         361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL  440 (477)
T ss_dssp             HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHH
Confidence                     11000 111111          35788888885          2356678889999999999999888777


Q ss_pred             hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      -+.|+=..++.++.++ +++||.+|..++..+..
T Consensus       441 ~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         441 DKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            7889999999999999 99999999999987754

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.32  E-value=8.3e-08  Score=73.82  Aligned_cols=109  Identities=19%  Similarity=0.221  Sum_probs=88.0

Q ss_pred             hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009636          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (530)
Q Consensus       294 L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (530)
                      |+++++.+|..|+++|+.+..            ..++.|+..|.++ ++.+|..|+++|+++..  +         +.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--h---------hhHH
Confidence            456778888888888876531            3467788999988 99999999999998742  2         3578


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009636          374 PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE  438 (530)
Q Consensus       374 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~  438 (530)
                      .|..++.+.++.||..|+++|+.+..   +         ..++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---c---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999999999999998833   2         24677788999999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.22  E-value=1.9e-07  Score=71.66  Aligned_cols=108  Identities=21%  Similarity=0.195  Sum_probs=85.8

Q ss_pred             cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009636          253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (530)
Q Consensus       253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L  332 (530)
                      .++++.|+..++++|+.+..            ..++.|+..|.++++.++..|+++|+++..           .+.++.|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L   58 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPL   58 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHH
Confidence            34566777777777766531            345778889999999999999999987652           2357889


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009636          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (530)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  395 (530)
                      ..+|.++ ++.||..|+++|+.+.  ++         +.++.|..++.++++.||..|+.+|.
T Consensus        59 ~~~l~d~-~~~VR~~a~~aL~~i~--~~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          59 IKLLEDD-SGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHC-CTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             Hhhhccc-hhHHHHHHHHHHHHhC--cc---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999988 9999999999999883  22         35778888999999999999998874

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.022  Score=49.80  Aligned_cols=202  Identities=13%  Similarity=0.081  Sum_probs=150.6

Q ss_pred             HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh----hHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ----TQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       279 ~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~----~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      +.+...+++..|+..|..-+...+..+..+++++.+.....    .+.+.. ..++..|+....   ++++--.+...|.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHH
Confidence            44666789999999999999999999999999998754322    233442 234444444443   4455555556666


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC---ChHHHHhccCCCChHHH
Q 009636          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG---CIKPLCDLLVCPDPRIV  430 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~i~~L~~lL~~~~~~~~  430 (530)
                      .++.+ ......++....+..+.+.+..++.++...|..++..+.... +.....++..+   +...+..+|.+++.-++
T Consensus       140 Ecik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         140 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            66554 566777888888999999999999999999999999998864 44444444443   46777889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      ..++..|+.++-...+..-        ....+.+..-+..+..|..+++..|+-.|..+..=|
T Consensus       218 RqSlKLLgelLldr~N~~v--------m~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvF  272 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFTI--------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF  272 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHHH--------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHH--------HHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhh
Confidence            9999999999976655332        355666677788888999999999998888877643

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.023  Score=49.65  Aligned_cols=199  Identities=11%  Similarity=0.081  Sum_probs=143.1

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH----HHHHHHH-hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC
Q 009636          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTND----KIQAVIE-AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~  316 (530)
                      .+++..|+..|..-+-+.+.++..+++++.....+    ....+.. ..++..|+....  ++++...+-.+|.-.+. .
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREcik-~  144 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR-H  144 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT-S
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHHh-h
Confidence            56677788888888888888888888888754332    2233332 234444544443  44455555445554444 5


Q ss_pred             chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC---cHHHHHHHHhcCchhHHHHHHHH
Q 009636          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN---IIGPLVALLENAEFDIKKEAAWA  393 (530)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~~a~~a  393 (530)
                      +.....++....+..+.+++..+ .-++...|..++..+....+.....++..+   ++.....++.+++.-+|+.++..
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            66677888888899999999999 999999999999998876677777776544   57777889999999999999999


Q ss_pred             HHHhhcCCCHH--HHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636          394 ISNATSGGTHE--QIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       394 L~nl~~~~~~~--~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~  444 (530)
                      |+.+.......  ..+++-+..-+..++.+|.+....++..|...+.-++...
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            99998743211  2234334455888999999999999999888776555443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.039  Score=57.76  Aligned_cols=302  Identities=10%  Similarity=0.054  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHhhhCCCchhhhhHhh----cCChHHH
Q 009636          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLS----QGGLVPL  206 (530)
Q Consensus       133 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~----~~~i~~L  206 (530)
                      .+..|..++..++....+.....+..-+...+.....  +.+...++.++.+++.++............    ....+.+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            4556666777776644333222211111111222222  256778888888888886432211110000    0111112


Q ss_pred             H----Hhhc--CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH----
Q 009636          207 L----AQLN--GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND----  276 (530)
Q Consensus       207 l----~ll~--~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~----  276 (530)
                      .    ..+.  ......++..++|+++..+....   ......+++.++.++.+++..++..+++++..++.....    
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~  533 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccc
Confidence            2    2221  33456788899999999887542   234577899999999999999999999999998753221    


Q ss_pred             -------HHHHHHHhCcHHHHHHhhCCCCch-----hHHHHHHHHhHhhcCCchh----hHHHhhcCchHHHHHhhcCCC
Q 009636          277 -------KIQAVIEAGVFPRLAEFLMHPSPS-----VLIPALRTVGNIVTGDDMQ----TQCVIEYQALPCLLNLLSGNY  340 (530)
Q Consensus       277 -------~~~~~~~~~~l~~L~~lL~~~~~~-----~~~~al~~L~nl~~~~~~~----~~~~~~~~~l~~L~~lL~~~~  340 (530)
                             .....+. .++..++..+......     ....++.+++.++....+.    ...++ ..+.+.+....+++.
T Consensus       534 ~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~  611 (959)
T d1wa5c_         534 AFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL-AQFIEIVTIMAKNPS  611 (959)
T ss_dssp             CBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHH-HHHHHHHHHHTTSCC
T ss_pred             hhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcc
Confidence                   0111111 2344455555433211     1223555665554322211    11111 122222333334443


Q ss_pred             chhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---CHHHHHHHHHcCChH
Q 009636          341 KKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG---THEQIKFLVIQGCIK  416 (530)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~i~  416 (530)
                      ++.....+..+|+.+... +++....+ ...++|.+...+..........+...+..+....   ++...      ..+.
T Consensus       612 ~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~l~~  684 (959)
T d1wa5c_         612 NPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK------PLAQ  684 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG------GGHH
T ss_pred             chHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHH------HHHH
Confidence            566677777778877652 33333333 3457788888887766666667766666555432   11110      1233


Q ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636          417 PLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       417 ~L~~lL~~~~~~~~~~al~~l~~ll~~~~~  446 (530)
                      .+..............+...+..++..++.
T Consensus       685 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~  714 (959)
T d1wa5c_         685 PLLAPNVWELKGNIPAVTRLLKSFIKTDSS  714 (959)
T ss_dssp             HHTSGGGGCCTTTHHHHHHHHHHHHHHHGG
T ss_pred             HHhhHHHHHHhhhHHHHHHHHHHHHHhCHH
Confidence            333322223333455566677777666544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.071  Score=55.71  Aligned_cols=299  Identities=8%  Similarity=0.009  Sum_probs=146.6

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh--------hhhHhh--
Q 009636          130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--------RDLVLS--  199 (530)
Q Consensus       130 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~--------~~~i~~--  199 (530)
                      .+.++..++|+++..+......  ..  ..+++.++..|.+++..++..|++++..++......        .+.+..  
T Consensus       471 ~~~lr~~~~~~i~~~~~~~~~~--~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l  546 (959)
T d1wa5c_         471 HIILRVDAIKYIYTFRNQLTKA--QL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST  546 (959)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCHH--HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred             hHHHHHHHHHHHHHHHhhccHH--HH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH
Confidence            3789999999999988743211  11  246789999999999999999999999998533211        000000  


Q ss_pred             cCChHHHHHhhcCCCch----hHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc----C-CChhHHHHHHHHHHHh
Q 009636          200 QGGLVPLLAQLNGQPKL----SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----S-NDDEVLTDACWALSYL  270 (530)
Q Consensus       200 ~~~i~~Ll~ll~~~~~~----~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~----~-~d~~v~~~a~~~l~~l  270 (530)
                      ...+..++..+......    .....++.++..+..............+++.+...+.    + .++.....+..++..+
T Consensus       547 ~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l  626 (959)
T d1wa5c_         547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI  626 (959)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            01233444444222211    1123355555555443322223334455555555442    2 2456666777777776


Q ss_pred             ccCC-hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHH
Q 009636          271 SDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC  349 (530)
Q Consensus       271 ~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~  349 (530)
                      .... ++... -....+++.+...+..........++..+..+..........+.  .+++.++...... .......+.
T Consensus       627 ~~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~-~~~~~~~~~  702 (959)
T d1wa5c_         627 LNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK--PLAQPLLAPNVWE-LKGNIPAVT  702 (959)
T ss_dssp             HHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG--GGHHHHTSGGGGC-CTTTHHHHH
T ss_pred             HHhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHH--HHHHHHhhHHHHH-HhhhHHHHH
Confidence            5432 22223 23345678888888777767777777777766643332111111  1223332222222 222233344


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChH
Q 009636          350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPR  428 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~  428 (530)
                      .++.++....++....  ..+++..+..++....  ....+...+..++.....+.....+. .++..+...+.. ..+.
T Consensus       703 ~~l~~~~~~~~~~~~~--~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~~~~~~~~~l~-~i~~~~~~~l~~~~~~~  777 (959)
T d1wa5c_         703 RLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIK-QIAVLLLQRLQNSKTER  777 (959)
T ss_dssp             HHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHGGGSSCCHH
T ss_pred             HHHHHHHHhCHHhhcc--hHHHHHHHHHHHCCCc--chHHHHHHHHHHHHHCchhhhHhHHH-HHHHHHHHHHHhcccHH
Confidence            4444443211111100  0123344444454332  23456666666654433222221111 234444444443 3455


Q ss_pred             HHHHHHHHHHHHH
Q 009636          429 IVTVCLEGLENIL  441 (530)
Q Consensus       429 ~~~~al~~l~~ll  441 (530)
                      +....+..+..++
T Consensus       778 ~~~~~~~~~~~~~  790 (959)
T d1wa5c_         778 YVKKLTVFFGLIS  790 (959)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555554

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.44  E-value=0.0017  Score=55.65  Aligned_cols=69  Identities=17%  Similarity=0.109  Sum_probs=40.5

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (530)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  240 (530)
                      +..|..+++++++.++..+++.|+                  ...+..++ .+++..++..+...+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~-~D~d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALM-FDEDREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTT-TCSCHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHh-cCCChhHHHHHHhccC-------------
Confidence            566778888888999988875432                  12233444 5666777666655431             


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHH
Q 009636          241 VSPALPALAHLIHSNDDEVLTDACW  265 (530)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~  265 (530)
                          .+.|..++.+++..|+..+..
T Consensus       116 ----~~~L~~Ll~D~d~~VR~~aa~  136 (233)
T d1lrva_         116 ----LEQLEQMAADRDYLVRAYVVQ  136 (233)
T ss_dssp             ----TGGGGGGTTCSSHHHHHHHHH
T ss_pred             ----HHHHHHHhcCCCHHHHHHHHh
Confidence                123444555666666655543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.27  E-value=0.37  Score=43.16  Aligned_cols=174  Identities=14%  Similarity=0.146  Sum_probs=109.3

Q ss_pred             hHHHHHhhcC---CCchhHHHHHHHHhhhhc----cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636          203 LVPLLAQLNG---QPKLSMLRNATWTLSNFC----RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       203 i~~Ll~ll~~---~~~~~~~~~a~~~L~~L~----~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                      +..+..++..   ..++.+...+..+++++.    ...+.........+...+.......+.+-..-++.+|+|+..  +
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p  202 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P  202 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H
Confidence            4455555521   135666666666666554    333333334444555556666667777777788999999852  2


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCC-------CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHH
Q 009636          276 DKIQAVIEAGVFPRLAEFLMHP-------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKE  347 (530)
Q Consensus       276 ~~~~~~~~~~~l~~L~~lL~~~-------~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~  347 (530)
                               +.++.|..++...       ...++..|++++.+++...+...        .+.+..++.+. .+.++|..
T Consensus       203 ---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRia  265 (336)
T d1lsha1         203 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR  265 (336)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHH
Confidence                     3456677777432       45689999999999987655332        34455555443 26789998


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHH
Q 009636          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQ  405 (530)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~  405 (530)
                      |+..|... .-+..         .+..+...+.. .+..|...+...|.+++...+|..
T Consensus       266 A~~~lm~t-~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         266 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHhc-CCCHH---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcch
Confidence            88887553 22222         34555565644 478888888888999888665543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.76  E-value=0.0093  Score=50.81  Aligned_cols=115  Identities=9%  Similarity=0.085  Sum_probs=64.3

Q ss_pred             cHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       286 ~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                      -+..|..+++++++.|+..+...|+                  .+.|..++.++ +..||..++..+.            
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~------------  115 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP------------  115 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC------------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC------------
Confidence            3456777888888888888875432                  12344555555 6777766554321            


Q ss_pred             HHHhCcHHHHHHHHhcCchhHHHHHHHH-----HHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHH
Q 009636          366 VIEANIIGPLVALLENAEFDIKKEAAWA-----ISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGL  437 (530)
Q Consensus       366 l~~~~~i~~L~~ll~~~~~~v~~~a~~a-----L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l  437 (530)
                            .+.|..++.++++.||..++..     |..++...+++....+...-..+.|..+++++++.++..+...+
T Consensus       116 ------~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 ------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             ------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             ------HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                  1233344455555555555432     22222333344444444444456677778888888887776543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.40  E-value=0.95  Score=40.42  Aligned_cols=157  Identities=11%  Similarity=0.105  Sum_probs=100.8

Q ss_pred             HHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 009636           77 VMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA  145 (530)
Q Consensus        77 ~l~~~l~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~  145 (530)
                      .++..|++.-. +.....+..|+--+.......++.+ ..+++..|+.+|..    .      .+...+.+++.||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            44555555332 3334456666555554322234455 34446667766531    1      12568899999999999


Q ss_pred             cCChhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc--hhhhh----------HhhcCChHHHHHhhcC
Q 009636          146 SGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--RCRDL----------VLSQGGLVPLLAQLNG  212 (530)
Q Consensus       146 ~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~--~~~~~----------i~~~~~i~~Ll~ll~~  212 (530)
                      . +......++ ..+++..+...+.++.+.++..|+.+|..+|....  .....          .-+.+-..++++.+..
T Consensus        85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            8 455555554 56789999999999999999999999999985431  11122          1234556778887855


Q ss_pred             CCchhHHHHHHHHhhhhccCCCC
Q 009636          213 QPKLSMLRNATWTLSNFCRGKPQ  235 (530)
Q Consensus       213 ~~~~~~~~~a~~~L~~L~~~~~~  235 (530)
                      ..+.+....++..+..+....+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             cccHHHHHHHHHHHHHHHcCccc
Confidence            66777777777777777766543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.03  E-value=1.2  Score=39.83  Aligned_cols=140  Identities=13%  Similarity=0.065  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC-----CHHHH------HHH
Q 009636          342 KSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGG-----THEQI------KFL  409 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-----~~~~~------~~l  409 (530)
                      .....++..||..+... ......++ ..+++..++..+.++.+.++..|...|..++...     .....      ...
T Consensus        70 ~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~  148 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  148 (343)
T ss_dssp             HHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            45677888888888664 44555555 4678899999999999999999999998887532     11111      122


Q ss_pred             HHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009636          410 VIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  487 (530)
Q Consensus       410 ~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~  487 (530)
                      .+.+-...+++.+... +.+....++..+..++...+....     --..+..|..+|..+.|..+....++++.....
T Consensus       149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~-----R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi~  222 (343)
T d2bnxa1         149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQLC  222 (343)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred             cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH-----HHHHHHHHHHCChHHHHHHHHccCChHHHHHHH
Confidence            3445577888877654 567777888888777765544322     223677889999999999999999988765443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.83  E-value=3  Score=36.91  Aligned_cols=201  Identities=15%  Similarity=0.129  Sum_probs=121.2

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhC----
Q 009636          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG----  188 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~----  188 (530)
                      .+..+.+++.+.. ..- .+|...+..+..... ...     ..+..+..++.+    .++.++..+..+++++..    
T Consensus        89 a~~~i~~~I~~~~-ls~-~ea~~~l~~l~~~~~-Pt~-----~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          89 ALLFLKRTLASEQ-LTS-AEATQIVASTLSNQQ-ATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHHTTC-SCH-HHHHHHHHHHHHTCC-CCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC-CCH-HHHHHHHHHHhccCC-CCH-----HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            3555677776655 121 223333333433111 111     124556666665    467888889888888762    


Q ss_pred             CCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC-------Chh
Q 009636          189 DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-------DDE  258 (530)
Q Consensus       189 ~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-------d~~  258 (530)
                      ..+.+...     .++.+...+.   ...+.+-...++.+|+|+-.          ...++.+..++...       +..
T Consensus       161 ~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         161 NTVSCPDE-----LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             TCSSCCGG-----GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHH
T ss_pred             CCCCCcHH-----HHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHH
Confidence            33323222     3444444442   34556666778889998853          34577777777532       467


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh
Q 009636          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL  336 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL  336 (530)
                      ++..+++++..+....+...+        +.+.+++.+  .+..+|..|+..+-..   .+..       ..+..+...+
T Consensus       226 vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~i~~~l  287 (336)
T d1lsha1         226 VQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRL  287 (336)
T ss_dssp             HHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHHHHHH
Confidence            999999999999877654333        344555544  4577888888777442   2221       2356677777


Q ss_pred             cCCCchhHHHHHHHHHHHHhcC
Q 009636          337 SGNYKKSIKKEACWTVSNITAG  358 (530)
Q Consensus       337 ~~~~~~~v~~~a~~~L~nl~~~  358 (530)
                      ..+.+..|.....-.|.+++..
T Consensus       288 ~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         288 RREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HhCcHHHHHHHHHHHHHHHHhC
Confidence            7665778888888888888874

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.74  Score=35.23  Aligned_cols=75  Identities=8%  Similarity=-0.108  Sum_probs=61.4

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHHhh
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll~~~  444 (530)
                      ++..|..-+.++++.++..|+..|-.++.++.+.+...+.+.+++..|..++..      .+..+...++..+.......
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            455677778889999999999999999999888888888888999999998863      45678888888887765544


Q ss_pred             h
Q 009636          445 E  445 (530)
Q Consensus       445 ~  445 (530)
                      +
T Consensus       126 p  126 (145)
T d1ujka_         126 P  126 (145)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=1.2  Score=33.86  Aligned_cols=74  Identities=8%  Similarity=-0.136  Sum_probs=60.5

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHHhh
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll~~~  444 (530)
                      .+..|..-+.++++.++..|+..|-.++.++.+.+...+.+..+++.|..++..      .++.|...++..+.......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            455667778889999999999999999999888888888888999999998863      46778888888877665543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.22  E-value=6.1  Score=29.76  Aligned_cols=72  Identities=19%  Similarity=0.244  Sum_probs=55.9

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 009636          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~il~~  492 (530)
                      ++..|..-+.++++.++..++..|..+++.+..          .|...+...+.++.|..+. ...+..|++++..+++.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~----------~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~  112 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA----------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT  112 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH----------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccch----------HHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            466677778889999999999999999987533          1566666667777777664 45688999999999999


Q ss_pred             hCC
Q 009636          493 YWL  495 (530)
Q Consensus       493 ~~~  495 (530)
                      |-.
T Consensus       113 W~~  115 (145)
T d1dvpa1         113 WAY  115 (145)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            744

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.43  E-value=3.1  Score=36.62  Aligned_cols=191  Identities=13%  Similarity=0.043  Sum_probs=99.0

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      .++...+..|+.++.++++.-|+....+|.++-+.....|..+.+ .+...+.+.+.......-...+++.++.+..+-.
T Consensus       129 ~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~  207 (343)
T d2jaka1         129 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFA  207 (343)
T ss_dssp             TSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred             hCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhcc
Confidence            334456788999999999999999999999988777666765543 2455566666444455566667777777777653


Q ss_pred             CC-ChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636          235 QP-PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       235 ~~-~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl  312 (530)
                      .+ ......-....++.+..... ...-.....++......++.....++     ..+++.==..+..-...-+.-+..+
T Consensus       208 ~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~i-----~~llk~WP~t~~~Kev~FL~el~~i  282 (343)
T d2jaka1         208 LPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNELEEI  282 (343)
T ss_dssp             SSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHSSCSSCCTTHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHHH-----HHHHHhCCCCCchHHHHHHHHHHHH
Confidence            32 33333333444555544332 11222233333333333333222111     1122211112222233334444444


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      ....+...-.-+...+...+...+.++ +..|.+.|+...
T Consensus       283 l~~~~~~~f~~~~~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         283 LDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            433322111112224566666777777 777766665443

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.08  E-value=3.9  Score=31.20  Aligned_cols=72  Identities=8%  Similarity=-0.059  Sum_probs=57.0

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHH
Q 009636          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILK  442 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll~  442 (530)
                      ++..|.+-+.++++.++..|+..|-.++.++...+...+.+..++..|..++..      .++.|...++..+.....
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~  117 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  117 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHH
Confidence            455677778889999999999999999998877777888888889899888864      355688877777665543