Citrus Sinensis ID: 009649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
Protein Sequence
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQPMSGKMSYTMLSR
Secondary Structure (PSIPRED)
cccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcHHHHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHcccccEEEEccc
Coil and Loop (DISEMBL)
MDMSDKDKFVLEkrndnpmdyhspnmssdwqfsGANLANAALnlvptgnplgvgssscssapmvdsfnqtiwdhptnsqslgycnidaqhnasssnalgirkgssaslrscidrpldigwnpassmikggiflpnapgmfpqslsqfpadSAFIERAArfssfsggnfcdmmntfgtpeptglysrgrgmmqgpqevfagnglkslsggqsqknemnvaevskdaslsvehgasngstlknerkgeslvnshgeakqgvgasggdsdeaefsggggqdepsavegtggepsakglsskkrkrngqdiefdqakggqssgeaakdntenqrkgdhkpsstgnksagkqgkqgsqtsdppkeeYIHVRArrgqatnshsLAERVRREKISERMKFLQDLvpgcskvtgkAVMLDEIINYVQSLQRQVEFLSMKLatvnprldFNIEELLAKdvlqsragpsstlgfspdmplvyppvhqsqaglmhgalpgmgnpsdILRRTInsqltpmtggfkepsqpmsgkmsytmlsr
Flexible Loop (DISEMBL)
MDMSDKDKFVLEkrndnpmdyhSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVehgasngstlknerKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQdepsavegtggepsakglsskkrkrnGQDIefdqakggqssgeaakdntenqrkgdhkpsstgnksagkqgkqgsqtsdppKEEYIHVrarrgqatnshslaeRVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTpmtggfkepsqpmsgkmsytmlsr
Low Complexity Region (SEG)
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGanlanaalnlVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQPMSGKMSYTMLSR
Disordered region (IsUnstruct)
*********************************GANLANAALNLVPT******************SFNQTIWDHPTNSQSLGYCNID*********************RSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFG**********************************************************************************************************************************************************************************************************************MKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVL******************************************************************************
Disordered Region (DISOPRED)
******************************************************************FNQTIWD*PT***************************************************************************AFIE*************************************************************************************************************************************************************************************************************************************EKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN*R********************************************************************************************
Disordered Region (DISEMBL)
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKG**********************************************************GQDIEFDQ***********************************************KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFK*****************
Disordered Region (DISPRO)
*******KFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPL******C*SAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMM**PQ*********S*********************************************************************************************************************************************************KEEYIHVRARRGQ***SHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPS**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQPMSGKMSYTMLSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	530	2.2.26 [Sep-21-2011]
Q9CAA9	486	Transcription factor bHLH	yes	no	0.820	0.895	0.510	1e-116
Q9C670	390	Transcription factor bHLH	no	no	0.652	0.887	0.380	6e-69
Q6NKN9	366	Transcription factor bHLH	no	no	0.256	0.371	0.661	4e-47
Q9SRT2	456	Transcription factor bHLH	no	no	0.3	0.348	0.581	7e-45
Q8GY61	335	Transcription factor bHLH	no	no	0.213	0.337	0.709	2e-41
Q9LK48	371	Transcription factor bHLH	no	no	0.411	0.587	0.429	4e-41
Q0JXE7	343	Transcription factor BPE	no	no	0.349	0.539	0.455	5e-37
Q9ZPW3	337	Transcription factor bHLH	no	no	0.305	0.480	0.505	4e-36
Q93W88	286	Transcription factor bHLH	no	no	0.279	0.517	0.55	6e-36
Q93VJ4	304	Transcription factor BEE	no	no	0.235	0.411	0.576	5e-35

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  419 bits (1078), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 265/519 (51%), Positives = 319/519 (61%), Gaps = 84/519 (16%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNM-SSDWQFSGANLANAALNLVPTGNPLGVGSSSCS 59
           MD+S KD+F  EKRN  P +Y S N  S DW+          ++  P+ N +  G +SCS
Sbjct: 1   MDLSAKDEFSAEKRN--PDNYDSVNNPSGDWR----------VDSYPSENLISAGPASCS 48

Query: 60  SAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIG 119
            + M+DSF QT+W  PT+ Q++GY   +   NASSS           S R  IDR L++G
Sbjct: 49  PSQMMDSFGQTLWYDPTSVQAVGYAGFNG-GNASSS-----------SFRGSIDRSLEMG 96

Query: 120 WN-PASSMIKG-GIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNT-FG 176
           WN P     KG G+FLPNA    P S++QFPADS FIERAARFS FSGGNF DM+N   G
Sbjct: 97  WNLPNLLPPKGNGLFLPNASSFLPPSMAQFPADSGFIERAARFSLFSGGNFSDMVNQPLG 156

Query: 177 TPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNG 236
             E  GL+ +G G MQG                Q Q NE+NV E   D S++V+      
Sbjct: 157 NSEAIGLFLQGGGTMQG----------------QCQSNELNVGEPHNDVSVAVK------ 194

Query: 237 STLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLS 296
                    ES V S  +AK  V  SG  S++ + SGG GQ         G E S+   +
Sbjct: 195 ---------ESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQ--------KGRETSS---N 234

Query: 297 SKKRKRNGQ-DIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKS-AGKQGKQGSQT 354
           +KKRKRNGQ + E  Q+   Q S E   +N + +R  +  P+S G KS +GKQ  QG Q+
Sbjct: 235 TKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQ--QGKQS 292

Query: 355 SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEI 414
           SDPPK+ YIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGC+KVTGKAVMLDEI
Sbjct: 293 SDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 352

Query: 415 INYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPP 474
           INYVQSLQRQVEFLSMKLATVNP++DFN+E LLAKD LQ RAG SST  F P+M + YPP
Sbjct: 353 INYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPNMSMAYPP 412

Query: 475 VHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFK 513
           +     G M   L  +G       RTI S L+PM GGFK
Sbjct: 413 LPH---GFMQQTLSSIG-------RTITSPLSPMNGGFK 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  261 bits (668), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 192/504 (38%), Positives = 251/504 (49%), Gaps = 158/504 (31%)

Query: 3   MSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAP 62
           MSDKD+F  +K++                     L N  ++L P  NP+ +G S     P
Sbjct: 1   MSDKDEFAAKKKD---------------------LVNTPVDLYPPENPM-LGPS-----P 33

Query: 63  MVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLR--SCIDRPLDIGW 120
           M+DSF +T+W                 H+        +   +  S R  + ID PL++GW
Sbjct: 34  MMDSFRETLW-----------------HDG----GFNVHTDADTSFRGNNNIDIPLEMGW 72

Query: 121 NPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN----TFG 176
           N                      ++QFPADS FIERAA+FS F  G    MMN    + G
Sbjct: 73  N----------------------MAQFPADSGFIERAAKFSFFGCGEM--MMNQQQSSLG 108

Query: 177 TPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNG 236
            P+ TGL+ +   +  G +          L  G                        ++ 
Sbjct: 109 VPDSTGLFLQDTQIPSGSK----------LDNGP----------------------LTDA 136

Query: 237 STLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLS 296
           S L  ER   ++                 S++++ SGG G D+        G+ S+KG S
Sbjct: 137 SKLVKERSINNV-----------------SEDSQSSGGNGHDDAKC-----GQTSSKGFS 174

Query: 297 SKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSD 356
           SKKRKR G+D E ++ K               ++K +  P+S  NK+  ++     Q SD
Sbjct: 175 SKKRKRIGKDCEEEEDK---------------KQKDEQSPTSNANKTNSEK-----QPSD 214

Query: 357 PPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIIN 416
             K+ YIH+RARRGQATNSHSLAERVRREKISERMKFLQDLVPGC KVTGKAVMLDEIIN
Sbjct: 215 SLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIIN 274

Query: 417 YVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPV- 475
           YVQSLQ Q+EFLSMKL+ VNP LDFN+E LLAKD LQS A P+    F  +M ++YPPV 
Sbjct: 275 YVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSA-PT----FPHNMSMLYPPVS 329

Query: 476 HQSQAGLMHGALPGMGNPSDILRR 499
           + SQ G M   +  M   S  L+R
Sbjct: 330 YLSQTGFMQPNISSMSLLSGGLKR 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  189 bits (481), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 116/142 (81%), Gaps = 6/142 (4%)

Query: 325 NTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRR 384
           N ++Q+K  HK     ++S     K+ SQ+ + PKE YIH+RARRGQATNSHSLAERVRR
Sbjct: 172 NDQSQKK--HK----NDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRR 225

Query: 385 EKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIE 444
           EKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ+QVEFLSMKLATVNP ++ +I+
Sbjct: 226 EKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDID 285

Query: 445 ELLAKDVLQSRAGPSSTLGFSP 466
            +LAKD+LQSR   + TLG +P
Sbjct: 286 RILAKDLLQSRDRNTPTLGLNP 307

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  182 bits (461), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 103/177 (58%), Positives = 121/177 (68%), Gaps = 18/177 (10%)

Query: 279 EPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSS 338
           +P A     GE S  G  S+KRK           K  Q+S  A   + E + K D  P  
Sbjct: 188 KPLASHVPAGESS--GELSRKRK----------TKSKQNSPSAVSSSKEIEEKEDSDP-- 233

Query: 339 TGNKSAGKQGKQGSQT-SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDL 397
              K   K  + G +T S  P ++YIHVRARRGQAT+SHSLAERVRREKISERMK LQDL
Sbjct: 234 ---KRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDL 290

Query: 398 VPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQS 454
           VPGC+KVTGKA+MLDEIINYVQSLQRQVEFLSMKL++VN RLDFN++ LL+KD+  S
Sbjct: 291 VPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPS 347

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 97/117 (82%), Gaps = 4/117 (3%)

Query: 354 TSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 413
           T +  K +YIHVRARRGQAT+SHS+AERVRREKISERMKFLQDLVPGC K+TGKA MLDE
Sbjct: 161 TKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDE 220

Query: 414 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPL 470
           IINYVQSLQRQ+EFLSMKLA VNPR DF+++++ AK+V    A    T+  SP+M L
Sbjct: 221 IINYVQSLQRQIEFLSMKLAIVNPRPDFDMDDIFAKEV----ASTPMTVVPSPEMVL 273

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  169 bits (429), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/247 (42%), Positives = 142/247 (57%), Gaps = 29/247 (11%)

Query: 266 SDEAEFSGGGGQDEPSAVEGTGGE-PSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKD 324
           SD    +    +   S   G G E P++  L++   K +G++     +KGG+ S +    
Sbjct: 104 SDRVHTTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGEN---GGSKGGKRSKQDVAG 160

Query: 325 NTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRR 384
           +++N   G  K  S G+       K  ++  + PK+ YIHVRARRGQAT+SHSLAER RR
Sbjct: 161 SSKN---GVEKCDSKGD------NKDDAKPPEAPKD-YIHVRARRGQATDSHSLAERARR 210

Query: 385 EKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIE 444
           EKISERM  LQDLVPGC+++TGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPR++FN  
Sbjct: 211 EKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFNAN 270

Query: 445 ELLAKDVLQ---------------SRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPG 489
             L+ +++Q                +  PS+      +MP        S  G +H   PG
Sbjct: 271 ASLSTEMIQPGESLTQSLYAMACSEQRLPSAYYSLGKNMPRFSDTQFPSNDGFVHTETPG 330

Query: 490 MGNPSDI 496
               +D+
Sbjct: 331 FWENNDL 337

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score =  156 bits (394), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 120/204 (58%), Gaps = 19/204 (9%)

Query: 261 ASGGDSDEAEFSGGGGQDEPSAVEGTGGEPS----------AKGLSSKKRKRNGQDIEFD 310
           ++ GDS    F G     +        G+P+           +G+S   ++R       D
Sbjct: 27  STAGDSSRRSFVGPNQFGDADLTTAANGDPARMSHALSQAVIEGISGAWKRRE------D 80

Query: 311 QAKGGQSSGEAAKDNTENQR-KGDHKPSSTGN-KSAGKQGKQGSQTSDPPKEEYIHVRAR 368
           ++K  +          EN+R K D         +S G + +Q  Q  +P K+ YIHVRAR
Sbjct: 81  ESKSAKIVSTIGASEGENKRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKD-YIHVRAR 139

Query: 369 RGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFL 428
           RGQAT+SHSLAER RREKISERMK LQDLVPGC+KV GKA++LDEIINY+QSLQRQVEFL
Sbjct: 140 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 199

Query: 429 SMKLATVNPRLDFNIEELLAKDVL 452
           SMKL  VN R++  IE    K+V+
Sbjct: 200 SMKLEAVNSRMNPGIEVFPPKEVM 223

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3

 Score =  153 bits (386), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 112/176 (63%), Gaps = 14/176 (7%)

Query: 278 DEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPS 337
           D    +  TG E  A  L +K++       E    K  +   E     TE+  KG    S
Sbjct: 104 DTMEVLLKTGEETRAVALKNKRKPEVKTREEQKTEKKIKVEAE-----TESSMKGK---S 155

Query: 338 STGNKSAG----KQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKF 393
           + GN  A     K+  +G+  S+  K +YIHVRARRGQAT+ HSLAER RREKIS++MK+
Sbjct: 156 NMGNTEASSDTSKETSKGA--SENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKY 213

Query: 394 LQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAK 449
           LQD+VPGC+KVTGKA MLDEIINYVQ LQRQVEFLSMKLA +NP L+  +E++  K
Sbjct: 214 LQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVEDVSVK 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score =  152 bits (384), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 12/160 (7%)

Query: 315 GQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATN 374
           G++ G  A+ N+ N ++G       G KS  K+ K+GS+  + P  +YIHVRARRGQAT+
Sbjct: 96  GKTRGRKAR-NSNNSKEG-----VEGRKS--KKQKRGSK--EEPPTDYIHVRARRGQATD 145

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT 434
           SHSLAERVRREKISERM+ LQ+LVPGC KVTGKA+MLDEIINYVQ+LQ QVEFLSMKL +
Sbjct: 146 SHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTS 205

Query: 435 VNPRLDFNIEELLAKDVLQSRAG-PSSTLGFSPDMPLVYP 473
           ++P + ++    L   +LQS  G P     F+  MP   P
Sbjct: 206 ISPVV-YDFGSDLDGLILQSEMGSPEVGTSFTNAMPTTTP 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VJ4|BEE2_ARATH Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1

 Score =  149 bits (376), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 97/137 (70%), Gaps = 12/137 (8%)

Query: 322 AKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAER 381
           A+D TE   KG    S+T              +S+  K +YIHVRARRG+AT+ HSLAER
Sbjct: 110 AEDETEPSMKGKSNMSNTET------------SSEIQKPDYIHVRARRGEATDRHSLAER 157

Query: 382 VRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDF 441
            RREKIS++MK LQD+VPGC+KVTGKA MLDEIINYVQSLQ+QVEFLSMKL+ +NP L+ 
Sbjct: 158 ARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVINPELEC 217

Query: 442 NIEELLAKDVLQSRAGP 458
           +I++L AK       GP
Sbjct: 218 HIDDLSAKQFQAYFTGP 234

Positive regulator of brassinosteroid signaling.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
255547017	566	conserved hypothetical protein [Ricinus	0.973	0.911	0.708	0.0
224108619	562	predicted protein [Populus trichocarpa]	0.969	0.914	0.704	0.0
359473485	609	PREDICTED: LOW QUALITY PROTEIN: transcri	0.964	0.839	0.698	0.0
297738215	496	unnamed protein product [Vitis vinifera]	0.847	0.905	0.629	1e-168
356502674	551	PREDICTED: transcription factor bHLH49-l	0.935	0.900	0.593	1e-154
449434704	561	PREDICTED: transcription factor bHLH49-l	0.962	0.909	0.557	1e-148
449493518	517	PREDICTED: transcription factor bHLH49-l	0.879	0.901	0.523	1e-135
356495611	414	PREDICTED: transcription factor bHLH49-l	0.698	0.893	0.659	1e-135
449518045	533	PREDICTED: transcription factor bHLH49-l	0.909	0.904	0.548	1e-130
449463525	533	PREDICTED: transcription factor bHLH49-l	0.909	0.904	0.546	1e-129

>gi|255547017|ref|XP_002514566.1| conserved hypothetical protein [Ricinus communis] gi|223546170|gb|EEF47672.1| conserved hypothetical protein [Ricinus communis]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/524 (70%), Positives = 423/524 (80%), Gaps = 8/524 (1%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSP-NMSSDWQFSGANLANAALNLVPTGNPLGV------ 53
           MDMSD DK  LEKR DNP++YHSP NM+SDW+F  +N+ N +L LVPT N + V      
Sbjct: 1   MDMSDMDKLELEKRGDNPINYHSPANMTSDWRFGSSNITNTSLGLVPTDNQMPVCRGDLL 60

Query: 54  GSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCID 113
           G+SSCS+A MVDSF   +WDH TNS +LG+C+I+ Q++ S+SN +G RK    SLR   D
Sbjct: 61  GASSCSTASMVDSFGPGLWDHSTNSLNLGFCDINVQNHPSTSNTIGHRKSGPTSLRVGTD 120

Query: 114 RPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN 173
           + L +GWNP SSM+KGGIFLP+APG+ PQSLSQFPADSAFIERAARFS F+GGNF DMMN
Sbjct: 121 KALQMGWNPPSSMLKGGIFLPSAPGVLPQSLSQFPADSAFIERAARFSCFNGGNFSDMMN 180

Query: 174 TFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGA 233
            FG PE  GLYSR  GMMQGPQEVFA +GLK+++GGQ Q N   V E SKDAS+S+EH A
Sbjct: 181 PFGIPESMGLYSRSGGMMQGPQEVFAASGLKTVTGGQGQNNVTIVGETSKDASMSIEHVA 240

Query: 234 SNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAK 293
             G  LKNERK +SLV S+ EAKQG G SG +S+EAEFSGGGGQ+E S +EG G E SAK
Sbjct: 241 IEGP-LKNERKSDSLVRSNDEAKQGAGGSGDESEEAEFSGGGGQEEASTLEGNGMELSAK 299

Query: 294 GLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQ 353
            L  KKRKRNGQDIE DQAKG   S EAAKDN E Q+KGD  P+ST NK++GKQGKQGSQ
Sbjct: 300 SLGLKKRKRNGQDIELDQAKGNLQSVEAAKDNVEAQQKGDQTPTSTPNKTSGKQGKQGSQ 359

Query: 354 TSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 413
            SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE
Sbjct: 360 ASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 419

Query: 414 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYP 473
           IINYVQSLQRQVEFLSMKLATVNPRLDFNIE LLAKD+L SRA PSSTL FSPDM + YP
Sbjct: 420 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILHSRAVPSSTLAFSPDMIMAYP 479

Query: 474 PVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQ 517
           P + SQ GL+  + PGM + SD+LRRTI+SQLTP++G FKEP+Q
Sbjct: 480 PFNTSQPGLIQASFPGMESHSDVLRRTISSQLTPLSGVFKEPTQ 523

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108619|ref|XP_002314910.1| predicted protein [Populus trichocarpa] gi|222863950|gb|EEF01081.1| predicted protein [Populus trichocarpa]

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/524 (70%), Positives = 430/524 (82%), Gaps = 10/524 (1%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPN-MSSDWQFSGANLANAALNLVPTGNPLGV------ 53
           MDMSDKDKF L K NDNP++YHSP  +SSDW+F+  ++ N++L LVP  N + V      
Sbjct: 1   MDMSDKDKFELGKSNDNPINYHSPGGLSSDWRFNSTSIPNSSLGLVPIDNQMSVCRGDLV 60

Query: 54  GSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCID 113
           G++SCSSA ++DSF   +W+HPTNSQ+L +C+I+ Q+ ASSSN +GI KG+ ASLR+ ID
Sbjct: 61  GAASCSSASVIDSFGPAMWEHPTNSQNLVFCDINVQNIASSSNTVGIGKGAPASLRNGID 120

Query: 114 RPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN 173
           R L++GWNP +SM+KGG FLPNAPGM PQSLSQFPADSAFIERAARFS F+GG+F DM+N
Sbjct: 121 RTLEMGWNPPNSMLKGGNFLPNAPGMLPQSLSQFPADSAFIERAARFSCFNGGDFGDMVN 180

Query: 174 TFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGA 233
            FG PE  GL+SRG GMMQGP EVF G+G+KS+SGGQ+QKN MN  E SKD S+SV+H A
Sbjct: 181 PFGVPESMGLFSRGGGMMQGPGEVFVGSGMKSVSGGQAQKNVMNAGEASKDVSMSVDHMA 240

Query: 234 SNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAK 293
           + GS LKNE K ESL  S  EAK+GVG SG DSDEAEFSGG GQDEPS +EG  GE SAK
Sbjct: 241 TEGSPLKNETKRESLARSRDEAKKGVGGSGNDSDEAEFSGGSGQDEPSLLEGNCGELSAK 300

Query: 294 GLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQ 353
            L SKKRKR+G+D E DQAKG   + ++AK + E Q+KGD KP+ST +K++GKQGKQGSQ
Sbjct: 301 SLGSKKRKRSGEDAELDQAKG---TPQSAKGSPETQQKGDQKPTSTTSKASGKQGKQGSQ 357

Query: 354 TSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 413
            SD PKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE
Sbjct: 358 GSDQPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 417

Query: 414 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYP 473
           IINYVQSLQRQVEFLSMKLATVNPRLDFNIE LLAKD+LQSRA P S+L FS +MP+ YP
Sbjct: 418 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQSRAVPPSSLAFSSEMPMAYP 477

Query: 474 PVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQ 517
            +HQSQ GL+  A PGM + SDI+RRTINSQLT MT GFKEP+Q
Sbjct: 478 ALHQSQPGLIPTAFPGMESHSDIIRRTINSQLTAMTAGFKEPAQ 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473485|ref|XP_003631305.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like [Vitis vinifera]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/534 (69%), Positives = 423/534 (79%), Gaps = 23/534 (4%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGA--NLANAALNLVPTGNPLGV----- 53
           MDMSDKDKF LEKR+ + ++YHS +MSSDW+F G   NL N +++ V  GNP+ V     
Sbjct: 34  MDMSDKDKFELEKRSGDSLNYHSASMSSDWRFGGGGGNLTNTSMSTVQGGNPMAVCKGDL 93

Query: 54  -GSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCI 112
            GSSSCSSA MVDSF   +WDHP NSQ+LG+C+++ Q+NAS+S+ LGIRKG   SLR  I
Sbjct: 94  VGSSSCSSASMVDSFGPNLWDHPANSQTLGFCDMNVQNNASTSSTLGIRKGGPGSLRMDI 153

Query: 113 DRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMM 172
           D+ LDIGWNP SSM+KGGIFLPNAPGM PQ LSQFPADS FIERAARFS F+GGNF DMM
Sbjct: 154 DKTLDIGWNPPSSMLKGGIFLPNAPGMLPQGLSQFPADSGFIERAARFSCFNGGNFSDMM 213

Query: 173 NTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHG 232
           N F  PE    YSRG GM+Q  Q+VFA NGLKS+ GGQSQK+E ++AE+SKD S +V  G
Sbjct: 214 NPFSIPESLNPYSRGGGMLQ--QDVFASNGLKSVPGGQSQKDEPSMAEISKDVSSAV-RG 270

Query: 233 ASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGG--QDEPSAVEGTGGEP 290
           A  GS LKNERK ESLV S  EAKQG+G SG +SDEAEFSGGGG  Q+EPS +EGTGGEP
Sbjct: 271 AMEGSPLKNERKSESLVKSLEEAKQGIGVSGNESDEAEFSGGGGGGQEEPSILEGTGGEP 330

Query: 291 SA-KGLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQG 348
           S+ KGL SKKRKR+GQD E DQ KG  Q  GEA+KDN E Q KGD  PSS  +K+ GK G
Sbjct: 331 SSGKGLGSKKRKRSGQDPEIDQVKGSPQQPGEASKDNPEIQHKGDQNPSSVPSKNTGKHG 390

Query: 349 KQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA 408
           KQG+Q SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA
Sbjct: 391 KQGAQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA 450

Query: 409 VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDV--------LQSRAGPSS 460
           VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIE +L KDV        LQSR GPSS
Sbjct: 451 VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGMLGKDVSEIAXQKILQSRVGPSS 510

Query: 461 TLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKE 514
           T+GFSP+  + YP +H SQ GL+   LPG+GN SD +RRTINSQL  M+GG+KE
Sbjct: 511 TMGFSPETTMPYPQLHPSQPGLIQVGLPGLGNSSDAIRRTINSQLAAMSGGYKE 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738215|emb|CBI27416.3| unnamed protein product [Vitis vinifera]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 325/516 (62%), Positives = 370/516 (71%), Gaps = 67/516 (12%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSS 60
           MDMSDKDKF LEKR+ + ++YHS +MSSDW+F G    +             VGSSSCSS
Sbjct: 1   MDMSDKDKFELEKRSGDSLNYHSASMSSDWRFGGVCKGDL------------VGSSSCSS 48

Query: 61  APMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGW 120
           A MVDSF   +WDHP NSQ+LG+C+++ Q+NAS+S+ LGIRKG   SLR  ID+ LDIGW
Sbjct: 49  ASMVDSFGPNLWDHPANSQTLGFCDMNVQNNASTSSTLGIRKGGPGSLRMDIDKTLDIGW 108

Query: 121 NPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEP 180
           NP SSM+KGGIFLPNAPGM PQ LSQFPADS FIERAARFS F+GGNF DMMN F  PE 
Sbjct: 109 NPPSSMLKGGIFLPNAPGMLPQGLSQFPADSGFIERAARFSCFNGGNFSDMMNPFSIPES 168

Query: 181 TGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLK 240
              YSRG GM+Q  Q+VFA NGLKS+ GGQSQK+E ++AE+SKD S          S  +
Sbjct: 169 LNPYSRGGGMLQ--QDVFASNGLKSVPGGQSQKDEPSMAEISKDVS----------SAKQ 216

Query: 241 NERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSA-KGLSSKK 299
           N+  G                                          GEPS+ KGL SKK
Sbjct: 217 NKELG-----------------------------------------CGEPSSGKGLGSKK 235

Query: 300 RKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPP 358
           RKR+GQD E DQ KG  Q  GEA+KDN E Q KGD  PSS  +K+ GK GKQG+Q SDPP
Sbjct: 236 RKRSGQDPEIDQVKGSPQQPGEASKDNPEIQHKGDQNPSSVPSKNTGKHGKQGAQASDPP 295

Query: 359 KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYV 418
           KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYV
Sbjct: 296 KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYV 355

Query: 419 QSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQS 478
           QSLQRQVEFLSMKLATVNPRLDFNIE +L KD+LQSR GPSST+GFSP+  + YP +H S
Sbjct: 356 QSLQRQVEFLSMKLATVNPRLDFNIEGMLGKDILQSRVGPSSTMGFSPETTMPYPQLHPS 415

Query: 479 QAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKE 514
           Q GL+   LPG+GN SD +RRTINSQL  M+GG+KE
Sbjct: 416 QPGLIQVGLPGLGNSSDAIRRTINSQLAAMSGGYKE 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502674|ref|XP_003520142.1| PREDICTED: transcription factor bHLH49-like [Glycine max]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 314/529 (59%), Positives = 378/529 (71%), Gaps = 33/529 (6%)

Query: 3   MSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLG-------VGS 55
           MSDK+KF ++ RN++ + Y S  M SDW+F G+NLAN+++  V  GN          +GS
Sbjct: 1   MSDKEKFEVD-RNEDHVSYSS-GMHSDWRFGGSNLANSSVGFVGLGNNSMNVSRGDLIGS 58

Query: 56  SSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHN-ASSSNALGIRKGSSASLRSCIDR 114
           SSCSSA MVDS +   W++PT+SQ LG+C+I+  HN   SS+ + IRK      R   D 
Sbjct: 59  SSCSSASMVDSLSPNYWENPTSSQKLGFCDINNVHNNGGSSSTVAIRKDGFGFGRVGQDH 118

Query: 115 --PLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMM 172
              L++GWN A+SM      LPN P MFP SLSQFP DS FIERAARFS FSGGNF DM+
Sbjct: 119 HGTLEMGWNHANSM------LPNGPVMFPHSLSQFPTDSGFIERAARFSCFSGGNFGDMV 172

Query: 173 NTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKS-LSGGQSQKNEMNVAEVSKDASLSVEH 231
           N++G  +  GLY        G ++  AG+GLKS ++GGQSQ  +MNV E   D   SVEH
Sbjct: 173 NSYGIAQSMGLY--------GARDAIAGHGLKSVIAGGQSQGGDMNVVE---DVPPSVEH 221

Query: 232 -GASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSG-GGGQDEPSAVEGTGGE 289
             A+ GS LK++R+ E  V    E KQ +  +  +SD AE S  GGGQD+   +EGT GE
Sbjct: 222 LVAAKGSPLKSDRRSEGHVIFQDEGKQSLVRNANESDRAESSDDGGGQDDSPMLEGTSGE 281

Query: 290 PSAKGLSSKKRKRNGQDIEFDQAKGGQS-SGEAAKDNTENQRKGDHKPSSTGNKSAGKQG 348
           PS+KGL+SKKRKR+G+D + D+A G Q    E AK N+ENQ+KGD +P ST NK+ GK  
Sbjct: 282 PSSKGLNSKKRKRSGRDGDNDKANGAQELPSEGAKGNSENQQKGDQQPISTANKACGKNA 341

Query: 349 KQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA 408
           K GSQ SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA
Sbjct: 342 KLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA 401

Query: 409 VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDM 468
           VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIE LLAKD+LQ R  PS+ LGF  DM
Sbjct: 402 VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRPDPSTALGFPLDM 461

Query: 469 PLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQ 517
            + +PP+H  Q GL+H  +P M N SDIL+RTI+ QL P+ GGFKEP+Q
Sbjct: 462 SMAFPPLHPPQPGLIHPVIPNMTNSSDILQRTIHPQLAPLNGGFKEPNQ 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434704|ref|XP_004135136.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 294/527 (55%), Positives = 359/527 (68%), Gaps = 17/527 (3%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGS----- 55
           MD+ D+DKF LE   ++ ++  S +MSSDWQF    L      LV  GN   V +     
Sbjct: 1   MDIGDRDKFRLESSIEDTINC-SNSMSSDWQFGETTLTTMPTGLVLPGNVDVVRNQDMVG 59

Query: 56  SSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSC--ID 113
            S S+A MV+SF+ TIW+   + Q+LG  NI   + +++SN +GI K S   + S   ID
Sbjct: 60  CSSSTASMVESFSSTIWEQSAHCQNLGISNIQGHNISNTSNIIGISKASGCPVSSSSDID 119

Query: 114 RPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN 173
           R LDI WN + +M+KGG++LPN PGM P SLSQ PADS+FIERAAR S FSGGNF   + 
Sbjct: 120 RTLDISWNLSHNMLKGGVYLPNFPGMLPPSLSQLPADSSFIERAARLSCFSGGNFGGDVG 179

Query: 174 TFGTPEPTGLYSRGRGMMQGPQEVFAGNGL--KSLSGGQSQKNEMNVAEVSKDASLSVEH 231
            F  P+P G++SRG G++    +    NGL   S +GGQSQ+N +N +E S    L+ EH
Sbjct: 180 HFNVPDPVGVFSRGMGVIPERWDEIPRNGLGLASGTGGQSQRNVVN-SESSMPVCLTNEH 238

Query: 232 GASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPS 291
           GA    T ++  K  S +   G  K  V  S  +SDEAE SGG G  EP  +E TG E S
Sbjct: 239 GA----TERDSPKNGSPLKLDGRGKLAVDGSANESDEAECSGGDGLGEPCTLEATGKELS 294

Query: 292 AKGLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQ 350
            KGL ++KRKR+GQ  E DQA G  Q +  + KD+ E QRK D  P+ST NK  GK GKQ
Sbjct: 295 TKGLGTRKRKRSGQKTELDQANGPLQQTTVSPKDDAETQRKRDQNPNSTANKGTGKHGKQ 354

Query: 351 GSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVM 410
            SQ SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQ+LVPGCSKVTGKAVM
Sbjct: 355 ASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVM 414

Query: 411 LDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPL 470
           LDEIINYVQSLQRQVEFLSMKLATVNPRLD NI+ ++AKD+LQSR GP STLGFS  MP+
Sbjct: 415 LDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGVVAKDILQSRVGPLSTLGFSSHMPV 474

Query: 471 VYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQ 517
             PP H S   L+  + P +G+ S++LR T+NS +TP +GGFK PSQ
Sbjct: 475 ACPPPHISHHELIPTSFPAIGS-SEMLRSTMNSHMTPRSGGFKNPSQ 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493518|ref|XP_004159328.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/527 (52%), Positives = 336/527 (63%), Gaps = 61/527 (11%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGS----- 55
           MD+ D+DKF LE   ++ ++  S +MSSDWQF    L      LV  GN   V +     
Sbjct: 1   MDIGDRDKFRLESSIEDTINC-SNSMSSDWQFGETTLTTMPTGLVLPGNVDVVRNQDMVG 59

Query: 56  SSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSC--ID 113
            S S+A MV+SF+ TIW+   + Q+LG  NI   + +++SN +GI K S   + S   ID
Sbjct: 60  CSSSTASMVESFSSTIWEQSAHCQNLGISNIQGHNISNTSNIIGISKASGCPVSSSSDID 119

Query: 114 RPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN 173
           R LDI WN + +M+KGG++LPN PGM P SLSQ PADS+FIERAAR S FSGGNF   + 
Sbjct: 120 RTLDISWNLSHNMLKGGVYLPNFPGMLPPSLSQLPADSSFIERAARLSCFSGGNFGGDVG 179

Query: 174 TFGTPEPTGLYSRGRGMMQGPQEVFAGN--GLKSLSGGQSQKNEMNVAEVSKDASLSVEH 231
            F  P+P G++SRG G++    +    N  GL S +GGQSQ+N                 
Sbjct: 180 HFNVPDPVGVFSRGMGVIPERWDEIPRNGLGLASGTGGQSQRN----------------- 222

Query: 232 GASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPS 291
                           +VNS                E+    G G  EP  +E TG E S
Sbjct: 223 ----------------VVNS----------------ESSMPRGDGLGEPCTLEATGKELS 250

Query: 292 AKGLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQ 350
            KGL ++KRKR+GQ  E DQA G  Q +  + KD+ E QRK D  P+ST NK  GK GKQ
Sbjct: 251 TKGLGTRKRKRSGQKTELDQANGPLQQTTVSPKDDAETQRKRDQNPNSTANKGTGKHGKQ 310

Query: 351 GSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVM 410
            SQ SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQ+LVPGCSKVTGKAVM
Sbjct: 311 ASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVM 370

Query: 411 LDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPL 470
           LDEIINYVQSLQRQVEFLSMKLATVNPRLD NI+ ++AKD+LQSR GP STLGFS  MP+
Sbjct: 371 LDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGVVAKDILQSRVGPLSTLGFSSHMPV 430

Query: 471 VYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQ 517
             PP H S   L+  + P +G+ S++LR T+NS +TP +GGFK PSQ
Sbjct: 431 ACPPPHISHHELIPTSFPAIGS-SEMLRSTMNSHMTPRSGGFKNPSQ 476

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495611|ref|XP_003516668.1| PREDICTED: transcription factor bHLH49-like [Glycine max]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/382 (65%), Positives = 295/382 (77%), Gaps = 12/382 (3%)

Query: 139 MFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVF 198
           MFP +LSQFP DS FIERAARFS FSGGNF DM+N++G  +  GLY        G ++  
Sbjct: 1   MFPHTLSQFPTDSGFIERAARFSCFSGGNFSDMVNSYGIAQSMGLY--------GARDAI 52

Query: 199 AGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEH-GASNGSTLKNERKGESLVNSHGEAKQ 257
           AG+G+KS++GGQSQ  +MNV E +KD S SVEH  A+ GS LK++R+ E  V S  E KQ
Sbjct: 53  AGHGMKSVTGGQSQGGDMNVVEATKDVSPSVEHLVAAKGSPLKSDRRSEGHVISQDEGKQ 112

Query: 258 GVGASGGDSDEAEFSG-GGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQ 316
            +     +SD AE S  GGGQD+   +EGT GEPS+KGL++KKRKR+GQD + D+A G Q
Sbjct: 113 SLVRPANESDRAESSDDGGGQDDSPMLEGTSGEPSSKGLNTKKRKRSGQDGDNDKANGAQ 172

Query: 317 S-SGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNS 375
               E A+DN ENQ+KGDH+P+ST  K++GK  K GSQ SDPPKEEYIHVRARRGQATNS
Sbjct: 173 ELPSEGAEDNYENQQKGDHQPTSTA-KASGKNAKLGSQASDPPKEEYIHVRARRGQATNS 231

Query: 376 HSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435
           HSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV
Sbjct: 232 HSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 291

Query: 436 NPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSD 495
           NPRLDFNIE LLAKD+LQ R GPSS LGF  DM + +PP+H  Q GL+H  +P M N SD
Sbjct: 292 NPRLDFNIEGLLAKDILQQRPGPSSALGFPLDMSMAFPPLHPPQPGLIHPVIPNMANSSD 351

Query: 496 ILRRTINSQLTPMTGGFKEPSQ 517
           IL+RTI+ QL P+ GG KEP+Q
Sbjct: 352 ILQRTIHPQLAPLNGGLKEPNQ 373

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518045|ref|XP_004166054.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 288/525 (54%), Positives = 336/525 (64%), Gaps = 43/525 (8%)

Query: 3   MSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGV-----GSSS 57
           M+ KD+F +E R  +PM     ++SS WQF+  NL N ++    TGNP  V     G SS
Sbjct: 1   MNGKDEFEVENRTSDPM-----SISSAWQFAAPNLTNESVGFDSTGNPSVVSNGDLGVSS 55

Query: 58  CSSAPMVDSFNQTIWDHPTNSQSLGYCN-IDAQHNASSSNALGIRKGSSASLRSCID-RP 115
           C S  M + F   + +H T SQ+ G+C   + Q++  +SN   +      SLRS  D R 
Sbjct: 56  CPSTSMSNLFTPALLNHHTESQNSGFCTTFNEQNSIVTSNTTLVDGEDLNSLRSNGDTRT 115

Query: 116 LDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNF-CDMMNT 174
           L + WN  +  +KG +F  N PG+FP +LSQ PADSAFIERAARFS F+ G F       
Sbjct: 116 LGMDWNQQNPWMKG-VFSGNVPGIFPPNLSQLPADSAFIERAARFSCFNNGVFGAPPAGP 174

Query: 175 FGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGAS 234
           FG  +  G++S G G   G QEV + NG                  VSKD SL +E  A 
Sbjct: 175 FGISDSLGIHSGG-GF--GRQEVISRNG------------------VSKDVSLPMELEAE 213

Query: 235 NGSTLKNERKGESLVNSHGEAKQG-VGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAK 293
             S  KNE+  E    S   AKQG VG SG DSDEA FSGG  QDE   + GT  EPS +
Sbjct: 214 EKSPPKNEKDSEM---SQDRAKQGCVGESGNDSDEAGFSGG--QDEQCTMGGTMTEPSTE 268

Query: 294 GLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGS 352
           GL  KKRKR  Q++   Q K   Q   E AK+   NQ+KG   PSST +K AGKQGKQ S
Sbjct: 269 GLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGGQNPSSTTSKPAGKQGKQDS 328

Query: 353 QTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLD 412
           Q SD PKEEYIHVRARRGQATNSHSLAERVRREKISERM+ LQDLVPGCSKVTGKAVMLD
Sbjct: 329 QPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLD 388

Query: 413 EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVY 472
           EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELL K+ +QS+AGP S  GF PDMP+ Y
Sbjct: 389 EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEFIQSKAGP-SLFGFPPDMPVPY 447

Query: 473 PPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQ 517
            P H S  GL+   LP MG+  D+LRRTINSQLT + GGFKEP Q
Sbjct: 448 LPQHSSHHGLIPPCLPTMGSSPDLLRRTINSQLTSLVGGFKEPVQ 492

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463525|ref|XP_004149484.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 287/525 (54%), Positives = 335/525 (63%), Gaps = 43/525 (8%)

Query: 3   MSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGV-----GSSS 57
           M+ KD+F +E R  +PM     ++SS WQF+  NL N ++    TGNP  V     G SS
Sbjct: 1   MNGKDEFEVENRTSDPM-----SISSAWQFAAPNLTNESVGFDSTGNPSVVSNGDLGVSS 55

Query: 58  CSSAPMVDSFNQTIWDHPTNSQSLGYCN-IDAQHNASSSNALGIRKGSSASLRSCID-RP 115
           C S  M + F   + +H T SQ+ G+C   + Q++  +SN   +      SLRS  D R 
Sbjct: 56  CPSTSMSNLFTPALLNHHTESQNSGFCTTFNEQNSIVTSNTTLVDGEDLNSLRSNGDTRT 115

Query: 116 LDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNF-CDMMNT 174
           L + WN  +  +KG +F  N PG+FP +LSQ PADSAFIERAARFS F+ G F       
Sbjct: 116 LGMDWNQQNPWMKG-VFSGNVPGIFPPNLSQLPADSAFIERAARFSCFNNGVFGAPPAGP 174

Query: 175 FGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGAS 234
           FG  +  G++S G G   G QEV + NG                  VSKD SL +E  A 
Sbjct: 175 FGISDSLGIHSGG-GF--GRQEVISRNG------------------VSKDVSLPMELEAE 213

Query: 235 NGSTLKNERKGESLVNSHGEAKQG-VGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAK 293
             S  KNE+  E    S   AKQG VG SG DSDEA FSGG  QDE   + GT  EPS +
Sbjct: 214 EKSPPKNEKDSEM---SQDRAKQGCVGESGNDSDEAGFSGG--QDEQCTMGGTMTEPSTE 268

Query: 294 GLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGS 352
           GL  KKRKR  Q++   Q K   Q   E AK+   NQ+KG   PSST +K AGKQGKQ S
Sbjct: 269 GLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGGQNPSSTTSKPAGKQGKQDS 328

Query: 353 QTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLD 412
           Q SD PKEEYIHVRARRGQATNSHSLAERVRREKISERM+ LQDLVPGCSKVTGKAVMLD
Sbjct: 329 QPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLD 388

Query: 413 EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVY 472
           EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELL K+ +QS+AGP S  GF PDMP+ Y
Sbjct: 389 EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEFIQSKAGP-SLFGFPPDMPVPY 447

Query: 473 PPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQ 517
            P H S  GL+   LP MG+  D+LRR INSQLT + GGFKEP Q
Sbjct: 448 LPQHSSHHGLIPPCLPTMGSSPDLLRRAINSQLTSLVGGFKEPVQ 492

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
TAIR|locus:2205420	486	AT1G68920 [Arabidopsis thalian	0.462	0.504	0.6	5e-85
UNIPROTKB|Q69JJ6	428	OSJNBa0026C08.22 "TA1 protein-	0.479	0.593	0.574	7.2e-68
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.503	0.610	0.520	1.3e-61
TAIR|locus:2028804	390	CIB5 "AT1G26260" [Arabidopsis	0.456	0.620	0.472	8.1e-57
UNIPROTKB|Q6ZCV8	365	P0028A08.20 "Os08g0487700 prot	0.490	0.712	0.463	6.7e-49
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.447	0.492	0.492	4.8e-46
UNIPROTKB|Q84LH4	327	OSJNBb0011H13.2 "Putative Heli	0.383	0.620	0.507	6e-46
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.3	0.348	0.581	1.2e-45
TAIR|locus:2201906	366	AT1G10120 "AT1G10120" [Arabido	0.284	0.412	0.607	2.4e-44
TAIR|locus:2152551	498	AT5G48560 "AT5G48560" [Arabido	0.383	0.407	0.475	7.5e-41

TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
 Identities = 162/270 (60%), Positives = 188/270 (69%)

Query:   246 ESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQ 305
             ES V S  +AK  V  SG  S++ + SGG GQ         G E S+   ++KKRKRNGQ
Sbjct:   195 ESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQK--------GRETSS---NTKKRKRNGQ 243

Query:   306 -DIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKS-AGKQGKQGSQTSDPPKEEYI 363
              + E  Q+   Q S E   +N + +R  +  P+S G KS +GKQ  QG Q+SDPPK+ YI
Sbjct:   244 KNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQ--QGKQSSDPPKDGYI 301

Query:   364 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQR 423
             HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGC+KVTGKAVMLDEIINYVQSLQR
Sbjct:   302 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQR 361

Query:   424 QVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLM 483
             QVEFLSMKLATVNP++DFN+E LLAKD LQ RAG SST  F P+M + YPP+     G M
Sbjct:   362 QVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPNMSMAYPPLPH---GFM 418

Query:   484 HGALPGMGNPSDILRRTINSQLTPMTGGFK 513
                L  +G       RTI S L+PM GGFK
Sbjct:   419 QQTLSSIG-------RTITSPLSPMNGGFK 441

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 154/268 (57%), Positives = 191/268 (71%)

Query:   266 SDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDN 325
             +D+AE   G G DE  + E  GG+ S+KG  SKKR+R  + +  DQ        ++A ++
Sbjct:   150 NDKAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKRRRPNEVMGTDQVHSSNLPSDSANES 209

Query:   326 TENQRKGDHK-PSST-GNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVR 383
               ++ KG+   P++T G KS GK  K+   TS+  KEEYIHVRARRGQATNSHSLAER+R
Sbjct:   210 VHSKDKGEESSPATTNGGKSKGKGAKE---TSESQKEEYIHVRARRGQATNSHSLAERLR 266

Query:   384 REKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNI 443
             REKISERMK LQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLD NI
Sbjct:   267 REKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLNI 326

Query:   444 EELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINS 503
             E LL+KD+L+    PSS++GFSP+M  ++P +  SQ GL+HG   GM NP D+ RR I +
Sbjct:   327 EGLLSKDLLRFPGVPSSSIGFSPEM--MHPQLQLSQPGLIHGGTAGMANP-DVFRRIIQA 383

Query:   504 QLTPMTGGFKEPSQ-PMSGKMSYTMLSR 530
             QL     G K+ SQ P S   S++ +S+
Sbjct:   384 QL-----GAKDGSQMPHSLNGSFSDVSQ 406

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 151/290 (52%), Positives = 187/290 (64%)

Query:   242 ERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRK 301
             E +G   V+  GE +QG     G++  A  S       P    G G +   +   SKKRK
Sbjct:   142 EIEGSKNVSQTGEKQQG----DGETTHAVDSSSKELSMPGRNGGAGHDEGTRVSCSKKRK 197

Query:   302 RNGQDIEFDQAKGGQ---SSGEAAKDNTENQRKGDHKPSSTGN-KSAGKQGKQGSQTSDP 357
             R+GQD     A+GG+   + G A K+  E+  KG+ K SS  + KS+GKQ K  + +   
Sbjct:   198 RSGQDGGVKHAEGGEQLATVGSAQKN--EDDEKGEPKRSSVASGKSSGKQIKDNAGS--- 252

Query:   358 PKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINY 417
             PKE+YIHVRARRGQATNSHSLAERVRREKISERMK+LQDLVPGCSKVTGKAVMLDEIINY
Sbjct:   253 PKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINY 312

Query:   418 VQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGP-SSTLGFSPDM--PLVYPP 474
             VQSLQRQVEFLSMKLA+VNP LDFNIE +L+KD+ Q R    SS  GF PD+  P ++PP
Sbjct:   313 VQSLQRQVEFLSMKLASVNPTLDFNIERILSKDIFQCRGTTASSAFGFFPDIVHPRLHPP 372

Query:   475 VHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQPMSGKMS 524
              + +Q G+     P + NP+D   R I++ L      FKEP   M   ++
Sbjct:   373 KY-TQVGM-----PSIVNPTDAFGRVIHAPLGT-NSAFKEPKHQMPNNLN 415

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 8.1e-57, Sum P(3) = 8.1e-57
 Identities = 128/271 (47%), Positives = 162/271 (59%)

Query:   245 GESLVNSHGEAKQGVGASGG-DSDEAEFSGGGGQDEPSAVEGTG--GEPSAKGLSSKKRK 301
             GE ++N   ++  GV  S G    + +   G   D     + +    E S   +S   + 
Sbjct:    96 GEMMMNQQ-QSSLGVPDSTGLFLQDTQIPSGSKLDNGPLTDASKLVKERSINNVSEDSQS 154

Query:   302 RNGQDIEFDQAKGGQSS------------GEAAKDNTENQRKGDHKPSSTGNKSAGKQGK 349
               G     D AK GQ+S            G+  ++  + ++K +  P+S  NK+  ++  
Sbjct:   155 SGGNG--HDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEK-- 210

Query:   350 QGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAV 409
                Q SD  K+ YIH+RARRGQATNSHSLAERVRREKISERMKFLQDLVPGC KVTGKAV
Sbjct:   211 ---QPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAV 267

Query:   410 MLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMP 469
             MLDEIINYVQSLQ Q+EFLSMKL+ VNP LDFN+E LLAKD LQS A P+    F  +M 
Sbjct:   268 MLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSA-PT----FPHNMS 322

Query:   470 LVYPPV-HQSQAGLMHGALPGMGNPSDILRR 499
             ++YPPV + SQ G M   +  M   S  L+R
Sbjct:   323 MLYPPVSYLSQTGFMQPNISSMSLLSGGLKR 353

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0048513 "organ development" evidence=RCA

UNIPROTKB|Q6ZCV8 P0028A08.20 "Os08g0487700 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 134/289 (46%), Positives = 170/289 (58%)

Query:   259 VGASGGDSDEAEFSGGGGQDEPSAVEG--------TGG--EPSAKGLSSKKRKRNGQDIE 308
             V  S G +  A  SG G    P+AV G        +GG  EP+    S  K++R+ +   
Sbjct:    60 VSPSTGAATAA--SGAGFLLPPAAVRGGFGSFPVNSGGIVEPAGDCSSESKKRRSDEIAG 117

Query:   309 FDQAKGGQS---SG---EAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEY 362
              D A    +   SG   E +KD    +  G    ++ G KS GK  K   +     KE Y
Sbjct:   118 TDHANASNALADSGNETECSKD-VNGEVIGPPATAAAGGKSKGKGAKDAGEAQ---KEGY 173

Query:   363 IHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQ 422
              HVRAR+GQATN+HSLAER+RREKISERMK LQDLVPGCSKVTGKA+MLDEIINYVQSLQ
Sbjct:   174 SHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSLQ 233

Query:   423 RQVEFLSMKLATVNPRLDFNIEELL--AKDVLQSRAGPSST-LGFSPDMPLVYPPVHQSQ 479
             RQVEFLSMKL+ VNPR+D +IE L+  +KDVL+    PSS  +GFS    ++ P +  S+
Sbjct:   234 RQVEFLSMKLSAVNPRIDLDIESLVNNSKDVLRFPGQPSSAPMGFSFSTEMM-PGLQLSR 292

Query:   480 AGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPS--QPMSGKMSYT 526
              G++ G + GM NP D+    +  Q     G F+EP   Q + G    T
Sbjct:   293 PGILQGGVHGMINP-DVFTSLMQKQQQNDKGAFREPQMHQTLDGSFRNT 340

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 126/256 (49%), Positives = 153/256 (59%)

Query:   244 KGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTG-GEPSAKGLSSKKRKR 302
             K   L N+  E+     A GG     + +  G   +  A  G G G+ S    S+ K   
Sbjct:   164 KEMELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKA-SGKGKGKDSPMSTSAAKEDS 222

Query:   303 NGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEY 362
             +G+     + K  + S  AA+   EN  KG    S++ N    KQGK  S     P ++Y
Sbjct:   223 SGK-----RCKSTEESNAAAE---ENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPKDY 274

Query:   363 IHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQ 422
             IHVRARRG+AT+SHSLAERVRREKIS+RMK LQDLVPGC+KV GKAVMLDEIINYVQSLQ
Sbjct:   275 IHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQ 334

Query:   423 RQVEFLSMKLATVNPRLDFN-IEELLAKDVLQSRAGPSSTLGF---SPDMPLVYPPVHQS 478
             RQVEFLSMKLATVNP+LDFN +  LLAKD+ QS   P  +  F   +   PL Y  ++Q 
Sbjct:   335 RQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQS-CSPLQSSHFPLETSGAPLPY--INQP 391

Query:   479 QAG--LMHGALPGMGN 492
             Q G  L  G   GM N
Sbjct:   392 QQGNPLGCGLTNGMDN 407

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q84LH4 OSJNBb0011H13.2 "Putative Helix-loop-helix DNA-binding domain containing protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 461 (167.3 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 106/209 (50%), Positives = 132/209 (63%)

Query:   296 SSKKRKRNGQDIEFDQAKGGQSSG--EAAKDNTENQRKGDHKPSSTGN-KSAGK-QGKQG 351
             SS  ++R G D          SS         TE   + +       N KS  K Q K+ 
Sbjct:    74 SSGAKRRKGIDDHIALLNPSASSRIQNVGDQQTEVSSQQERISMEEDNQKSCSKMQSKED 133

Query:   352 SQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVML 411
             S   D  KE+Y+HVRA+RGQATNSHSLAER+RR+KISERMK LQDLVPGCSK+TGKAVML
Sbjct:   134 SSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVML 193

Query:   412 DEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLV 471
             DEIINYVQSLQRQVEFLSMKLATVNP L F+IE++L+K ++ S+    +  G  P    +
Sbjct:   194 DEIINYVQSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRHLAFYGVDPGSSAL 253

Query:   472 YPPVHQSQAGLMHGALPGMGNPSDILRRT 500
                 H +Q  +    L  + NP+D+L+ T
Sbjct:   254 V--AHFNQGIMQPEMLCNVSNPADVLQGT 280

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 103/177 (58%), Positives = 121/177 (68%)

Query:   279 EPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSS 338
             +P A     GE S  G  S+KRK           K  Q+S  A   + E + K D  P  
Sbjct:   188 KPLASHVPAGESS--GELSRKRK----------TKSKQNSPSAVSSSKEIEEKEDSDP-- 233

Query:   339 TGNKSAGKQGKQGSQT-SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDL 397
                K   K  + G +T S  P ++YIHVRARRGQAT+SHSLAERVRREKISERMK LQDL
Sbjct:   234 ---KRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDL 290

Query:   398 VPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQS 454
             VPGC+KVTGKA+MLDEIINYVQSLQRQVEFLSMKL++VN RLDFN++ LL+KD+  S
Sbjct:   291 VPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPS 347

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 93/153 (60%), Positives = 120/153 (78%)

Query:   316 QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQ--GKQGSQTSDPPKEEYIHVRARRGQAT 373
             Q + +A ++  E+ ++G+ +          K+   K+ SQ+ + PKE YIH+RARRGQAT
Sbjct:   155 QWNKKAVEEFQEDPQRGNDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQAT 214

Query:   374 NSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA 433
             NSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ+QVEFLSMKLA
Sbjct:   215 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 274

Query:   434 TVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSP 466
             TVNP ++ +I+ +LAKD+LQSR   + TLG +P
Sbjct:   275 TVNPEINIDIDRILAKDLLQSRDRNTPTLGLNP 307

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2152551 AT5G48560 "AT5G48560" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 106/223 (47%), Positives = 140/223 (62%)

Query:   234 SNGSTLKNERKGESLVNSHGEAKQGVGAS---GGDSDEAEFSGGGGQDEPSAVEGTGGEP 290
             +NG+ + N     + V+S    K  V      GG+      S   G+ + + +      P
Sbjct:   183 NNGNNMVNNSGKLTRVSSTPALKALVSPEVTPGGEFSRKRKSVPKGKSKENPISTASPSP 242

Query:   291 SAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQ 350
             S    + K   + G   +  + KGG+   E  +D+ E + +G+      GNKS       
Sbjct:   243 SFSKTAEKNGGKGGS--KSSEEKGGKRRREE-EDDEEEEGEGE------GNKS------N 287

Query:   351 GSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVM 410
              ++  +PPK+ YIHVRARRGQAT+SHSLAERVRREKI ERMK LQDLVPGC+KVTGKA+M
Sbjct:   288 NTKPPEPPKD-YIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALM 346

Query:   411 LDEIINYVQSLQRQVEFLSMKLATVNP-RLDFNIEELLAKDVL 452
             LDEIINYVQSLQRQVEFLSMKL++VN  RLDFN++ L++KDV+
Sbjct:   347 LDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKDVM 389

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAA9	BH049_ARATH	No assigned EC number	0.5105	0.8207	0.8950	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	530
smart00353	53	smart00353, HLH, helix loop helix domain	2e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	2e-11
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	3e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.003

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 377 SLAERVRREKISERMKFLQDLVPGCSKVTG--KAVMLDEIINYVQSLQRQVE 426
           +  ER RR KI+E    L+ L+P   K     KA +L   I Y++SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 369 RGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTG--KAVMLDEIINYVQSLQRQVE 426
           R     +H+L ER RRE+I++    L+ L+P         KA +L + ++Y++SLQ  ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCS--KVTGKAVMLDEIINYVQSLQ 422
           +H+  ER RR++I++  + L++L+P     K++ KA +L   I Y++ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLS-KAEILRLAIEYIKHLQ 52

Length = 52

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 232 GASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPS 291
           G    S +   RKGE L+ +  EA+ G  A+   +  A  +        +A      +P+
Sbjct: 39  GIKGTSGM---RKGE-LIAAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPA 94

Query: 292 AKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQG 351
           A+  ++K             A    S+ EAA+      R+   +  +    +A K G+ G
Sbjct: 95  AEAAAAKAEAAPAARAAAAAAAEAASAPEAAQ-----ARERRERGEAARRGAARKAGEGG 149

Query: 352 SQTS--------DPPKEEYIHVRARRGQATNSHSLAERVRREKISER 390
            Q +        +  +EE    R RRG   +  + AER  R +  ER
Sbjct: 150 EQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREER 196

Length = 672

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	530
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.33
smart00353	53	HLH helix loop helix domain.	99.26
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.24
KOG1318	411	consensus Helix loop helix transcription factor EB	99.17
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.97
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.25
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	97.98
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.79
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	97.71
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.47
PLN03217	93	transcription factor ATBS1; Provisional	97.35
KOG0561	373	consensus bHLH transcription factor [Transcription	97.23
KOG4029	228	consensus Transcription factor HAND2/Transcription	96.79
KOG3910	632	consensus Helix loop helix transcription factor [T	95.77
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	88.09

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.33  E-value=1.4e-12  Score=99.78  Aligned_cols=53  Identities=36%  Similarity=0.634  Sum_probs=48.6

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHH
Q 009649          373 TNSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVE  426 (530)
Q Consensus       373 t~~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe  426 (530)
                      ...|+..||+||++||+.|..|+++||.+   .++ +|++||+.||+||+.|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~-~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKL-SKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHhC
Confidence            45799999999999999999999999998   554 999999999999999999863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.26  E-value=1e-11  Score=93.74  Aligned_cols=49  Identities=39%  Similarity=0.576  Sum_probs=44.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHH
Q 009649          377 SLAERVRREKISERMKFLQDLVPG---CSKVTGKAVMLDEIINYVQSLQRQVE  426 (530)
Q Consensus       377 slaERrRRerINer~r~Lq~LVP~---~~K~~DKASILdeAIdYIK~LQ~QVe  426 (530)
                      +..||+||++||+.|..|+.+||.   ..+. +|++||++||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999996   4465 899999999999999999986

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.24  E-value=9.2e-12  Score=95.53  Aligned_cols=49  Identities=37%  Similarity=0.699  Sum_probs=44.6

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHH
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ  422 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~----~K~~DKASILdeAIdYIK~LQ  422 (530)
                      ..|+..||+||++||+.|..|+.|||.+    ....+|++||+.||+||+.||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            3699999999999999999999999987    233599999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.17  E-value=4e-11  Score=125.89  Aligned_cols=87  Identities=31%  Similarity=0.489  Sum_probs=65.5

Q ss_pred             cccccccHHHHHHHHHHHHHHHHHhhcCCCCC----CCCCchhhHHHHHHHHHHHHHHHHHH------HhhhhhcCCCcc
Q 009649          371 QATNSHSLAERVRREKISERMKFLQDLVPGCS----KVTGKAVMLDEIINYVQSLQRQVEFL------SMKLATVNPRLD  440 (530)
Q Consensus       371 qAt~~HslaERrRRerINer~r~Lq~LVP~~~----K~~DKASILdeAIdYIK~LQ~QVe~L------e~kla~vnp~l~  440 (530)
                      ++++.|+++|||||++||++|++|..|||.|+    +. +|.+||..+++||+.||+..+..      +.++++.+.+|-
T Consensus       232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~-nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~  310 (411)
T KOG1318|consen  232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKS-NKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELA  310 (411)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHH
Confidence            34468999999999999999999999999994    43 79999999999999999766533      234455555565


Q ss_pred             chhhhhhhHHhhhcCCCC
Q 009649          441 FNIEELLAKDVLQSRAGP  458 (530)
Q Consensus       441 ~~ie~ll~~d~~q~~~~~  458 (530)
                      ..|+.|......+.....
T Consensus       311 ~rieeLk~~~~~~~~~~~  328 (411)
T KOG1318|consen  311 LRIEELKSEAGRHGLQVE  328 (411)
T ss_pred             HHHHHHHHHHHHhcCccc
Confidence            566666555555444443

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.97  E-value=2.2e-10  Score=110.45  Aligned_cols=65  Identities=31%  Similarity=0.518  Sum_probs=58.9

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCCCCC------CCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCc
Q 009649          375 SHSLAERVRREKISERMKFLQDLVPGCSKV------TGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL  439 (530)
Q Consensus       375 ~HslaERrRRerINer~r~Lq~LVP~~~K~------~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp~l  439 (530)
                      .|..+||+||+.|+..+..||+|||.|...      +.||.||.++|+||.+|..++...+.++++|+.++
T Consensus        65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v  135 (229)
T KOG1319|consen   65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV  135 (229)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999987432      26999999999999999999999999999988774

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.25  E-value=4.8e-07  Score=90.24  Aligned_cols=55  Identities=31%  Similarity=0.410  Sum_probs=47.0

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCCCC-------CCchhhHHHHHHHHHHHHHHHHHH
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGCSKV-------TGKAVMLDEIINYVQSLQRQVEFL  428 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~~K~-------~DKASILdeAIdYIK~LQ~QVe~L  428 (530)
                      ..|-+.|||||.|||+-+.+|++|||.+.++       .+||.||+-|++|++.||.+...-
T Consensus        34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~   95 (250)
T KOG4304|consen   34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA   95 (250)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence            3589999999999999999999999965332       279999999999999999765443

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=97.98  E-value=6.2e-06  Score=93.32  Aligned_cols=52  Identities=19%  Similarity=0.371  Sum_probs=47.5

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCchhhHHHHHHHHHHHHHH
Q 009649          373 TNSHSLAERVRREKISERMKFLQDLVPGCS---KVTGKAVMLDEIINYVQSLQRQ  424 (530)
Q Consensus       373 t~~HslaERrRRerINer~r~Lq~LVP~~~---K~~DKASILdeAIdYIK~LQ~Q  424 (530)
                      +..|+.+|||||+++|..|.+|.+|||.|.   .+.||-+||.+||..||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            467999999999999999999999999996   3349999999999999999885

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.79  E-value=4.1e-05  Score=76.14  Aligned_cols=62  Identities=24%  Similarity=0.344  Sum_probs=50.0

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCC--CchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009649          372 ATNSHSLAERVRREKISERMKFLQDLVPGCSKVT--GKAVMLDEIINYVQSLQRQVEFLSMKLA  433 (530)
Q Consensus       372 At~~HslaERrRRerINer~r~Lq~LVP~~~K~~--DKASILdeAIdYIK~LQ~QVe~Le~kla  433 (530)
                      ++..|+.-||+||..|.+.|..|+++||....-+  ..++||+.|++||+.|+.+....+..++
T Consensus        59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e  122 (232)
T KOG2483|consen   59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE  122 (232)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence            3457999999999999999999999999654322  2589999999999999976655554433

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=97.71  E-value=3.4e-05  Score=88.27  Aligned_cols=65  Identities=28%  Similarity=0.487  Sum_probs=54.7

Q ss_pred             cccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009649          371 QATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV  435 (530)
Q Consensus       371 qAt~~HslaERrRRerINer~r~Lq~LVP~~~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~v  435 (530)
                      ..+.+|+++|||-|-.||++|.+|++|||+..-+..|..+|..||+||++||..-+.+....+.+
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l  339 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL  339 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence            44677999999999999999999999999875444899999999999999998776665544433

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.47  E-value=0.00018  Score=72.67  Aligned_cols=58  Identities=21%  Similarity=0.254  Sum_probs=49.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009649          376 HSLAERVRREKISERMKFLQD-LVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA  433 (530)
Q Consensus       376 HslaERrRRerINer~r~Lq~-LVP~~~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla  433 (530)
                      -.+.||||=.|+||.|.+|++ -+++-+...-|..||..||+||..||.-++++.....
T Consensus       122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            468999999999999999965 5677776668999999999999999998888775433

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.35  E-value=0.00038  Score=60.70  Aligned_cols=54  Identities=31%  Similarity=0.524  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCC------CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 009649          382 VRREKISERMKFLQDLVPGC------SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  436 (530)
Q Consensus       382 rRRerINer~r~Lq~LVP~~------~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vn  436 (530)
                      ---+.|+|-+..||.|+|..      .|+ .-+-+|+|+.+||+.|+++|..|++.+..+-
T Consensus        17 isddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL   76 (93)
T PLN03217         17 ISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELL   76 (93)
T ss_pred             CCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999954      333 5677899999999999999999999987654

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.23  E-value=0.0003  Score=72.77  Aligned_cols=52  Identities=25%  Similarity=0.389  Sum_probs=45.5

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCC--CCCCCCchhhHHHHHHHHHHHHHHHHH
Q 009649          375 SHSLAERVRREKISERMKFLQDLVPG--CSKVTGKAVMLDEIINYVQSLQRQVEF  427 (530)
Q Consensus       375 ~HslaERrRRerINer~r~Lq~LVP~--~~K~~DKASILdeAIdYIK~LQ~QVe~  427 (530)
                      .-+..||||=.-||..|..|+.|+|.  ..|+ .||.||+.+.+||..|+.+.-+
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~Kt~  116 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHKTE  116 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcccc
Confidence            45778999999999999999999996  4676 8999999999999999865433

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=96.79  E-value=0.0012  Score=64.34  Aligned_cols=58  Identities=22%  Similarity=0.277  Sum_probs=49.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009649          375 SHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKL  432 (530)
Q Consensus       375 ~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe~Le~kl  432 (530)
                      .++..||.|=+-+|..|..||.+||.-   +|+..|..+|..||.||++|+.-++.-+...
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            367779999999999999999999942   4445999999999999999998887766544

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=95.77  E-value=0.018  Score=63.15  Aligned_cols=55  Identities=25%  Similarity=0.286  Sum_probs=46.2

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 009649          375 SHSLAERVRREKISERMKFLQDLVPG---CSKVTGKAVMLDEIINYVQSLQRQVEFLS  429 (530)
Q Consensus       375 ~HslaERrRRerINer~r~Lq~LVP~---~~K~~DKASILdeAIdYIK~LQ~QVe~Le  429 (530)
                      ..+..||.|=..|||.||+|.++.=-   ..|.--|.-||..||.-|-.|++||++-.
T Consensus       529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            48999999999999999999998752   23322488999999999999999998743

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=88.09  E-value=0.28  Score=47.24  Aligned_cols=48  Identities=23%  Similarity=0.357  Sum_probs=41.7

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHH
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQ  422 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ  422 (530)
                      --|++.||+|-..+|+.|..||.++|..  +|+ .|.-.|.-|-.||-+|=
T Consensus        80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~  129 (173)
T KOG4447|consen   80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLY  129 (173)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhh
Confidence            4699999999999999999999999964  665 78788888888888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	530
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	9e-19
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	2e-09
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	7e-08
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	9e-08
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1a0a_A	63	BHLH, protein (phosphate system positive regulator	7e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 79.7 bits (197), Expect = 9e-19
 Identities = 18/73 (24%), Positives = 38/73 (52%)

Query: 368 RRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 427
            RG+   +H+  E+  R  I++++  L+DLV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 428 LSMKLATVNPRLD 440
           L  +  ++   + 
Sbjct: 62  LKQENLSLRTAVH 74

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCSKVTG-----KAVMLDEIINYVQSLQRQVE 426
            H+  ER RR+KI+  +  L  ++P  S  +      K  +L +  +Y+Q L++   
Sbjct: 8   QHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQ 424
            H+  ER RR+ I +    L+D VP     K + +A +LD+   Y+Q ++R+
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKAS-RAQILDKATEYIQYMRRK 55

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 352 SQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKV-TGKAVM 410
           +   +   +       +R      H+  ER RR+ I +    L+D VP        +A +
Sbjct: 1   NDDIEVESDA-----DKR----AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQI 51

Query: 411 LDEIINYVQSLQRQVEFLSMKL 432
           LD+   Y+Q ++R+       +
Sbjct: 52  LDKATEYIQYMRRKNHTHQQDI 73

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 12/87 (13%)

Query: 366 RARRGQATNSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQ 422
             +R     +H++ ER RR ++      L+D +P      K   K V+L +   Y+ S+Q
Sbjct: 4   NVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAP-KVVILKKATAYILSVQ 58

Query: 423 RQVEFLSMKLATVNPRLDFNIEELLAK 449
            + +    KL +    L    E+L  K
Sbjct: 59  AEEQ----KLISEEDLLRKRREQLKHK 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 50/155 (32%)

Query: 352 SQTSDP--PKEEYIHVRARRGQATNSHSLAER--VRREKISERMKFLQDLVP-------- 399
           ++   P      YI  R R     ++   A+    R +   +  + L +L P        
Sbjct: 100 TEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 400 --GCSKVTGKAVML----------------------------DEIINYVQSLQRQVE--F 427
             G     GK  +                             + ++  +Q L  Q++  +
Sbjct: 158 VLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 428 LSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTL 462
            S    + N +L  +  +   + +L+S+   +  L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 374 NSHSLAERVRREKISERMKFLQDLVPGCSK------VTGKAVMLDEIINYVQSLQRQVE 426
            SH  AE+ RR +++  +  L  L+P   K         KA  ++    Y++ LQ+   
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	530
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.65
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.62
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.5
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.49
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.46
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.45
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.44
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.43
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.38
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.31
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.22
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.88
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.86
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.83
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.77
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.66
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.25
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.65

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.65  E-value=1e-16  Score=141.04  Aligned_cols=88  Identities=30%  Similarity=0.412  Sum_probs=50.9

Q ss_pred             ccchhhhhccccccccccHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHhh-----
Q 009649          360 EEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLSMK-----  431 (530)
Q Consensus       360 ~~yi~~RaRR~qAt~~HslaERrRRerINer~r~Lq~LVP~~~K---~~DKASILdeAIdYIK~LQ~QVe~Le~k-----  431 (530)
                      ++....++++++++..|+++||+||++||++|.+|++|||+|.+   ..+|++||++||+||++||.+++.|+..     
T Consensus        15 ~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~   94 (118)
T 4ati_A           15 ESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQK   94 (118)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             cchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556778888888999999999999999999999999999853   2389999999999999999999999854     


Q ss_pred             -hhhcCCCccchhhhhh
Q 009649          432 -LATVNPRLDFNIEELL  447 (530)
Q Consensus       432 -la~vnp~l~~~ie~ll  447 (530)
                       +...|..|...|+.|.
T Consensus        95 ~l~~~n~~L~~riqeLE  111 (118)
T 4ati_A           95 KLEHANRHLLLRVQELE  111 (118)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             3445555655555543

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.62  E-value=1.9e-16  Score=131.21  Aligned_cols=66  Identities=24%  Similarity=0.368  Sum_probs=59.3

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 009649          372 ATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP  437 (530)
Q Consensus       372 At~~HslaERrRRerINer~r~Lq~LVP~~~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp  437 (530)
                      ....|+++||+||++||++|.+|++|||++....+||+||++||+||++||.+++.|+.+...+..
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~   71 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999998444599999999999999999999999998877644

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.50  E-value=2.8e-15  Score=119.39  Aligned_cols=54  Identities=28%  Similarity=0.442  Sum_probs=47.8

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCCCCCC------CCCchhhHHHHHHHHHHHHHHHH
Q 009649          373 TNSHSLAERVRREKISERMKFLQDLVPGCSK------VTGKAVMLDEIINYVQSLQRQVE  426 (530)
Q Consensus       373 t~~HslaERrRRerINer~r~Lq~LVP~~~K------~~DKASILdeAIdYIK~LQ~QVe  426 (530)
                      ...|+++||+||++||+.|.+|+.|||.+.+      ..+||+||+.||+||+.||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            3589999999999999999999999997633      23699999999999999998864

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.49  E-value=7.1e-15  Score=116.11  Aligned_cols=54  Identities=28%  Similarity=0.452  Sum_probs=49.0

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHhhcCCCCC------CCCCchhhHHHHHHHHHHHHHHHH
Q 009649          372 ATNSHSLAERVRREKISERMKFLQDLVPGCS------KVTGKAVMLDEIINYVQSLQRQVE  426 (530)
Q Consensus       372 At~~HslaERrRRerINer~r~Lq~LVP~~~------K~~DKASILdeAIdYIK~LQ~QVe  426 (530)
                      ....|+++||+||++||+.|.+|++|||.|.      |+ +|++||++||+||+.||.+.+
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~-~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQ-SKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCC-CTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence            4568999999999999999999999999986      44 999999999999999998753

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.46  E-value=2.4e-14  Score=117.19  Aligned_cols=57  Identities=23%  Similarity=0.440  Sum_probs=51.4

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHH
Q 009649          372 ATNSHSLAERVRREKISERMKFLQDLVPGCS-KVTGKAVMLDEIINYVQSLQRQVEFLS  429 (530)
Q Consensus       372 At~~HslaERrRRerINer~r~Lq~LVP~~~-K~~DKASILdeAIdYIK~LQ~QVe~Le  429 (530)
                      ...+|+++||+||++||++|.+|+.|||.+. |+ ||++||+.||+||+.||.++.-|+
T Consensus         8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~-dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCC-CHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3457999999999999999999999999865 65 999999999999999999987664

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.45  E-value=9.6e-15  Score=119.73  Aligned_cols=54  Identities=30%  Similarity=0.471  Sum_probs=48.3

Q ss_pred             cccccccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 009649          369 RGQATNSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQR  423 (530)
Q Consensus       369 R~qAt~~HslaERrRRerINer~r~Lq~LVP~~----~K~~DKASILdeAIdYIK~LQ~  423 (530)
                      +.+++..|+++||+||++||+.|.+|+.|||.|    .|+ |||+||+.||+||+.||.
T Consensus         6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence            344556899999999999999999999999988    576 999999999999999973

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.44  E-value=7.6e-14  Score=114.55  Aligned_cols=61  Identities=28%  Similarity=0.476  Sum_probs=56.7

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV  435 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~v  435 (530)
                      ..|+.+||+||.+||+.|..|++|||.+  .|+ +|++||..||+||+.||.+++.|+.++..+
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L   76 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999987  465 999999999999999999999999988765

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.43  E-value=1.1e-13  Score=114.06  Aligned_cols=63  Identities=27%  Similarity=0.461  Sum_probs=56.9

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP  437 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp  437 (530)
                      ..|+.+||+||++||+.|..|+++||.+  .|. +|++||..||+||+.||.+++.|+.++..+..
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~   68 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR   68 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999985  665 99999999999999999999999888776543

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.38  E-value=3.3e-13  Score=113.45  Aligned_cols=60  Identities=27%  Similarity=0.390  Sum_probs=53.8

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT  434 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~  434 (530)
                      ..|+..||+||+.||++|..|+++||.+   .|. +|++||.+||+||++||.+.+.|..+...
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~   70 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDL   70 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999976   465 99999999999999999999888766544

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.31  E-value=7.7e-13  Score=109.09  Aligned_cols=57  Identities=25%  Similarity=0.355  Sum_probs=49.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSM  430 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe~Le~  430 (530)
                      ..|+..||+||+.||+.|.+|+++||.+   .|...|+.||..||+||++||++|++++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3699999999999999999999999953   44336889999999999999999998754

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.22  E-value=1.5e-11  Score=102.09  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=55.2

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  436 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vn  436 (530)
                      ..|+..||+||..||+.|..|+++||.+   .|. +|+.||..||+||+.||.+.+.|..+...+.
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~   67 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ   67 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999965   455 7999999999999999999999988766543

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.88  E-value=1.2e-09  Score=108.21  Aligned_cols=55  Identities=20%  Similarity=0.381  Sum_probs=42.1

Q ss_pred             ccccccccHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCchhhHHHHHHHHHHHHHHH
Q 009649          370 GQATNSHSLAERVRREKISERMKFLQDLVP-GCSKVTGKAVMLDEIINYVQSLQRQV  425 (530)
Q Consensus       370 ~qAt~~HslaERrRRerINer~r~Lq~LVP-~~~K~~DKASILdeAIdYIK~LQ~QV  425 (530)
                      ......|+++||+||++||+.|.+|+.||| ...|+ ||++||..||+|||.|+..-
T Consensus        10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhhc
Confidence            334557999999999999999999999999 45576 99999999999999998653

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.86  E-value=1.5e-09  Score=87.87  Aligned_cols=51  Identities=24%  Similarity=0.398  Sum_probs=46.2

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 009649          375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE  426 (530)
Q Consensus       375 ~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe  426 (530)
                      .|+..||+|+..||+.|..|+++||..  .|+ +|+.||..||+||++||..++
T Consensus        15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence            599999999999999999999999964  455 899999999999999998753

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.83  E-value=3e-09  Score=84.15  Aligned_cols=52  Identities=21%  Similarity=0.275  Sum_probs=46.2

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 009649          375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE  426 (530)
Q Consensus       375 ~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe  426 (530)
                      .|+..||+|+..||+.|..|+++||..  +++.+|..+|..||+||+.||..++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999999965  2334899999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.77  E-value=2.4e-09  Score=107.50  Aligned_cols=55  Identities=27%  Similarity=0.378  Sum_probs=48.1

Q ss_pred             cccccccccHHHHHHHHHHHHHHHHHhhcCC----CCCCCCCchhhHHHHHHHHHHHHHH
Q 009649          369 RGQATNSHSLAERVRREKISERMKFLQDLVP----GCSKVTGKAVMLDEIINYVQSLQRQ  424 (530)
Q Consensus       369 R~qAt~~HslaERrRRerINer~r~Lq~LVP----~~~K~~DKASILdeAIdYIK~LQ~Q  424 (530)
                      .++++.+|+.+||+||++||+.|.+|+.|||    ...|+ ||++||..||+|||.|+..
T Consensus        10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence            3445668999999999999999999999999    45676 9999999999999999843

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.66  E-value=1.8e-08  Score=84.97  Aligned_cols=66  Identities=29%  Similarity=0.453  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhhcCCCCC----CCCCchhhHHHHHHHHHHHHHHHHHHHh------hhhhcCCCccchhhhhhhHH
Q 009649          384 REKISERMKFLQDLVPGCS----KVTGKAVMLDEIINYVQSLQRQVEFLSM------KLATVNPRLDFNIEELLAKD  450 (530)
Q Consensus       384 RerINer~r~Lq~LVP~~~----K~~DKASILdeAIdYIK~LQ~QVe~Le~------kla~vnp~l~~~ie~ll~~d  450 (530)
                      |..||++|++|..|||.+.    |. +|++||..||+||+.||.+++.+.+      +++..|.+|.+.|.+|....
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~-nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa   79 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRW-NKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQA   79 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCC-SHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            8899999999999999864    44 8999999999999999987776653      34556667777777665444

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.25  E-value=2.7e-07  Score=75.35  Aligned_cols=46  Identities=22%  Similarity=0.421  Sum_probs=40.4

Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHH
Q 009649          377 SLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQR  423 (530)
Q Consensus       377 slaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~  423 (530)
                      +-.||+|+..||+.|..||++||..   .|+ +|..+|..||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence            3457889999999999999999965   455 899999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.65  E-value=7.2e-05  Score=64.76  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHH
Q 009649          380 ERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEF  427 (530)
Q Consensus       380 ERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe~  427 (530)
                      ||.|=..||+.|..||.+||..  +++..|..+|..||+||+.||..++.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            4778888999999999999964  33348999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	530
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	2e-16
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	1e-15
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	1e-14
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	2e-13
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	6e-13
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	4e-12
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	8e-12
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	1e-11

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (174), Expect = 2e-16
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 384 REKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFN 442
           R  I++++  L+DLV G      K+ +L + I+Y++ LQ+    L  +   +      N
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKN 59

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 1e-15
 Identities = 18/73 (24%), Positives = 38/73 (52%)

Query: 368 RRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 427
            RG+   +H+  E+  R  I++++  L+DLV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 428 LSMKLATVNPRLD 440
           L  +  ++   + 
Sbjct: 62  LKQENLSLRTAVH 74

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 1e-14
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 364 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK--VTGKAVMLDEIINYVQSL 421
           H+  +R     +H++ ER RR ++      L+D +P         K V+L +   Y+ S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 422 QRQVEFLSMKLATVNPRLDFNIEEL 446
           Q + + L  +   +  R +    +L
Sbjct: 58  QAEEQKLISEEDLLRKRREQLKHKL 82

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.0 bits (153), Expect = 2e-13
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCSKVTG------KAVMLDEIINYVQSLQRQVE 426
           SH  AE+ RR +++  +  L  L+P   K         KA  ++    Y++ LQ+   
Sbjct: 5   SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.8 bits (150), Expect = 6e-13
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCS-KVTGKAVMLDEIINYVQSLQRQVE 426
           + ++ ER R  K++E  + L+        +   K  +L   I Y++ LQ  + 
Sbjct: 15  AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 4e-12
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGC-SKVTGKAVMLDEIINYVQSLQRQVEFLSMKL 432
            H+  ER RR+ I +    L+D VP    +   +A +LD+   Y+Q ++R+       +
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (141), Expect = 8e-12
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 374 NSHSLAERVRREKISERMKFLQDLVPGCSKVTG-----KAVMLDEIINYVQSLQRQVE 426
             H+  ER RR+KI+  +  L  ++P  S  +      K  +L +  +Y+Q L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCSKV--TGKAVMLDEIINYVQSLQRQVEFLSMKL 432
           +H+  E+ RR  +   ++ L+ LVP            +L +   +++ L+        ++
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 433 ATVNPRLDFNIEELLAK 449
             +          L  +
Sbjct: 64  DQLQRE----QRHLKRQ 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	530
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.42
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.39
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.37
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.33

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-15  Score=121.90  Aligned_cols=64  Identities=25%  Similarity=0.381  Sum_probs=58.4

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 009649          373 TNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  436 (530)
Q Consensus       373 t~~HslaERrRRerINer~r~Lq~LVP~~~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vn  436 (530)
                      ...|+.+||+||++||+.|..|++|||++....+|++||..||+||+.|+.+++.|.++...+.
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3469999999999999999999999999875569999999999999999999999998887653

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=4.4e-14  Score=109.71  Aligned_cols=51  Identities=27%  Similarity=0.460  Sum_probs=46.4

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC-------CCCCCchhhHHHHHHHHHHHHHHH
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC-------SKVTGKAVMLDEIINYVQSLQRQV  425 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~-------~K~~DKASILdeAIdYIK~LQ~QV  425 (530)
                      ..|+.+||+||++||+.|..|++|||.+       .|+ +|+.||+.||+||+.||++|
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~-sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAP-SKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCS-CTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccc-cHHHHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999999953       454 89999999999999999876

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=110.61  Aligned_cols=63  Identities=16%  Similarity=0.216  Sum_probs=56.4

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGCS---KVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP  437 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~~---K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp  437 (530)
                      ..|+..||+||++||+.|..|++|||.+.   | .+|++||.+||+||+.|+.+++.|..+...+..
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~   68 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR   68 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999763   4 489999999999999999999999888776543

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=6e-14  Score=110.83  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=47.8

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHH
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGCS-KVTGKAVMLDEIINYVQSLQRQVE  426 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~~-K~~DKASILdeAIdYIK~LQ~QVe  426 (530)
                      ..|+..||+||++||+.|..|++|||.+. +..+|++||+.||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            36999999999999999999999999874 334899999999999999998875

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7.1e-14  Score=108.22  Aligned_cols=54  Identities=26%  Similarity=0.341  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 009649          384 REKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP  437 (530)
Q Consensus       384 RerINer~r~Lq~LVP~~~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp  437 (530)
                      |++||++|.+|++|||++.+++|||+||.+||+||++||.|++.|++++..+..
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~   54 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKL   54 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999998755699999999999999999999999998877644

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.2e-13  Score=110.02  Aligned_cols=61  Identities=28%  Similarity=0.476  Sum_probs=55.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV  435 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~v  435 (530)
                      ..|+.+||+||++||+.|..|++|||++  .|. +|++||..||+||+.|+.+++.|..+...+
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~-sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   66 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999975  454 999999999999999999999998877654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.2e-13  Score=111.08  Aligned_cols=64  Identities=27%  Similarity=0.398  Sum_probs=57.2

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPR  438 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp~  438 (530)
                      ..|+.+||+||++||+.|..|++|||++   .|. +|++||..||+||+.|+.+++.|..+...+..+
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~-sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~   74 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDLLRKR   74 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999975   344 899999999999999999999999887776544

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3e-13  Score=105.58  Aligned_cols=51  Identities=29%  Similarity=0.481  Sum_probs=46.3

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCC------CCCCchhhHHHHHHHHHHHHHHH
Q 009649          374 NSHSLAERVRREKISERMKFLQDLVPGCS------KVTGKAVMLDEIINYVQSLQRQV  425 (530)
Q Consensus       374 ~~HslaERrRRerINer~r~Lq~LVP~~~------K~~DKASILdeAIdYIK~LQ~QV  425 (530)
                      ..|+.+||+||++||+.|.+|++|||.+.      |+ +|++||..||+||+.||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~-sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQ-SKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCC-CTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCC-CHHHHHHHHHHHHHHHHHhh
Confidence            46999999999999999999999999763      55 89999999999999999763