Citrus Sinensis ID: 009651

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQVYMK
cccccccccccHHHccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHccccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccEEEEccccEEEccccccccccccEEEccccEEEEEEcEEEEEcccccEEEEccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccEEEEccccccccHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccEEEEcEEEEEcccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHcc
cccHHcccccccccHHccccccccccccHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEccHHHHHHHHccHHHHHHHHHHccccHHHHHcccccEEEcccHHHHHHHHHHHHHHHccccEEEEEEcccEcccEEEEEccEEEEEccccccccccccEEcHHHcEEEEEccEEEEccccEEEEEccEEEEEEEEEEEEEcccccccEEEEEEEEEEccccccHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHEEEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHEEEEcccccHHHccEEEHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccEEcccccEEEEHHHHHHHHccEEEEccHHHHHHHHHcccHHHHHHcHHHEEEccccEcHHHHcccccHHHHHHHHHHcccccHHHcHHHHHHHHHHHcc
madakangKNEAAKLAkipaaanplanepsaiasnisyhvqysphfsptkfepeqafFATAESVRDRLIQQWNETYhhfnkvdpkqtYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDaalgngglgrlascfldsmatlnlpawgyglryryglFKQKITKQGQEEVAEDWlekfspwevvrhdvvfpvrffgsvmvnpngtrkwvggEVVQAVaydipipgyktkntiSLRLWDakasaedfnlfqfndgqyeSAAQLHSRAQQICAvlypgdsteegKLLRLKQQFFLCSASLQDMILRFKErksgrqwsefpSKVAVQLndthptlaIPELMRLLMDeeglgwdeawdITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRsdleskipsmcildnnpkkpvvRMANLCVVSAHTVNGVAQLHSDILKADLFADYVslwpnklqnktngitprrwlrfcnpELSKIITKWLKTDQWVTNLDLLVGLRQVYMK
MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAydipipgykTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRsdleskipsmcildnnpkkPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNklqnktngitprrwlRFCNPELSKIITkwlktdqwvtnldllvglrqvymk
MADAKANGKNEaaklakipaaanplanEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDaalgngglgrlaSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQVYMK
**********************************NISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQVY**
******************************AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQVYM*
*************KLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQVYMK
*******************AAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQVYMK
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQVYMK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query530 2.2.26 [Sep-21-2011]
Q9SD76 841 Alpha-glucan phosphorylas yes no 0.986 0.621 0.806 0.0
P53537 842 Alpha-glucan phosphorylas N/A no 0.986 0.621 0.791 0.0
Q9LKJ3 832 Alpha-glucan phosphorylas N/A no 0.962 0.612 0.805 0.0
P32811 838 Alpha-glucan phosphorylas N/A no 0.971 0.614 0.806 0.0
Q9LIB2 962 Alpha-glucan phosphorylas no no 0.956 0.527 0.565 0.0
P04045 966 Alpha-1,4 glucan phosphor N/A no 0.947 0.519 0.518 1e-171
P27598 955 Alpha-1,4 glucan phosphor N/A no 0.766 0.425 0.635 1e-157
P53536 1003 Alpha-1,4 glucan phosphor N/A no 0.771 0.407 0.623 1e-154
P53535 974 Alpha-1,4 glucan phosphor N/A no 0.766 0.416 0.608 1e-151
Q00766 853 Glycogen phosphorylase 1 yes no 0.939 0.583 0.514 1e-151
>sp|Q9SD76|PHS2_ARATH Alpha-glucan phosphorylase 2, cytosolic OS=Arabidopsis thaliana GN=PHS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/526 (80%), Positives = 471/526 (89%), Gaps = 3/526 (0%)

Query: 4   AKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAES 63
           A ANGK   +   KI A ANP A++ + IA NI YH +YSPHFSP KF PEQA +ATAES
Sbjct: 2   ANANGKAATSLPEKISAKANPEADDATEIAGNIVYHAKYSPHFSPLKFGPEQALYATAES 61

Query: 64  VRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHV 123
           +RDRLIQ WNETY HFNKVDPKQTYYLSME+LQGR LTNAIG+L++Q  YADAL  LG+ 
Sbjct: 62  LRDRLIQLWNETYVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADALRTLGYE 121

Query: 124 LEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEV 183
           LEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYR+GLFKQ ITK+GQEE+
Sbjct: 122 LEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGLFKQIITKKGQEEI 181

Query: 184 AEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKN 243
            EDWLEKFSPWE+VRHDVVFPVRFFG V VNP+G+RKWV G+VVQA+AYD+PIPGY TKN
Sbjct: 182 PEDWLEKFSPWEIVRHDVVFPVRFFGKVQVNPDGSRKWVDGDVVQALAYDVPIPGYGTKN 241

Query: 244 TISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQ 303
           TISLRLW+AKA AED +LFQFN+G+YE AAQLHSRAQQIC VLYPGD+TE GKLLRLKQQ
Sbjct: 242 TISLRLWEAKARAEDLDLFQFNEGEYELAAQLHSRAQQICTVLYPGDATENGKLLRLKQQ 301

Query: 304 FFLCSASLQDMILRFKERKS---GRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL 360
           FFLCSASLQD+I RF ER +    R+WSEFPSKVAVQ+NDTHPTLAIPELMRLLMD+ GL
Sbjct: 302 FFLCSASLQDIISRFHERSTTEGSRKWSEFPSKVAVQMNDTHPTLAIPELMRLLMDDNGL 361

Query: 361 GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS 420
           GWDEAWD+T++TVAYTNHTVLPEALEKWSQ++MWKLLPRHMEIIEEIDKRF+  +R TR 
Sbjct: 362 GWDEAWDVTSKTVAYTNHTVLPEALEKWSQSLMWKLLPRHMEIIEEIDKRFVQTIRDTRV 421

Query: 421 DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK 480
           DLE KI S+ ILDNNP+KPVVRMANLCVVS+HTVNGVAQLHSDILKA+LFADYVS+WPNK
Sbjct: 422 DLEDKISSLSILDNNPQKPVVRMANLCVVSSHTVNGVAQLHSDILKAELFADYVSIWPNK 481

Query: 481 LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQ 526
            QNKTNGITPRRWLRFC+PELS IITKWLKTD+W+T+LDLL GLRQ
Sbjct: 482 FQNKTNGITPRRWLRFCSPELSDIITKWLKTDKWITDLDLLTGLRQ 527
Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1
>sp|P53537|PHSH_VICFA Alpha-glucan phosphorylase, H isozyme OS=Vicia faba PE=2 SV=1 Back     alignment and function description
>sp|Q9LKJ3|PHSH_WHEAT Alpha-glucan phosphorylase, H isozyme OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|P32811|PHSH_SOLTU Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|Q9LIB2|PHS1_ARATH Alpha-glucan phosphorylase 1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1 Back     alignment and function description
>sp|P04045|PHSL1_SOLTU Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2 Back     alignment and function description
>sp|P27598|PHSL_IPOBA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Ipomoea batatas PE=2 SV=1 Back     alignment and function description
>sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Vicia faba GN=PHO1 PE=2 SV=2 Back     alignment and function description
>sp|P53535|PHSL2_SOLTU Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1 Back     alignment and function description
>sp|Q00766|PHS1_DICDI Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
21063929 840 starch phosphorylase type H [Citrus hybr 0.992 0.626 0.998 0.0
255558824 849 glycogen phosphorylase, putative [Ricinu 0.966 0.603 0.862 0.0
225434692 843 PREDICTED: alpha-glucan phosphorylase, H 0.992 0.623 0.846 0.0
224104329 853 predicted protein [Populus trichocarpa] 0.986 0.613 0.836 0.0
449450784 844 PREDICTED: alpha-glucan phosphorylase, H 0.994 0.624 0.811 0.0
187370620 843 alpha-1,4-glucan phosphorylase H isozyme 0.994 0.625 0.815 0.0
297819302 841 alpha-glucan phosphorylase 2 [Arabidopsi 0.986 0.621 0.809 0.0
356527232 846 PREDICTED: alpha-glucan phosphorylase, H 0.971 0.608 0.815 0.0
15232704 841 alpha-glucan phosphorylase isozyme H [Ar 0.986 0.621 0.806 0.0
356566195 846 PREDICTED: alpha-glucan phosphorylase, H 0.990 0.620 0.8 0.0
>gi|21063929|gb|AAM29154.1| starch phosphorylase type H [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1102 bits (2849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/526 (99%), Positives = 525/526 (99%)

Query: 1   MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFAT 60
           MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFAT
Sbjct: 1   MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFAT 60

Query: 61  AESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNL 120
           AE VRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNL
Sbjct: 61  AEVVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNL 120

Query: 121 GHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQ 180
           GHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQ
Sbjct: 121 GHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQ 180

Query: 181 EEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYK 240
           EEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYK
Sbjct: 181 EEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYK 240

Query: 241 TKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRL 300
           TKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRL
Sbjct: 241 TKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRL 300

Query: 301 KQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL 360
           KQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL
Sbjct: 301 KQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL 360

Query: 361 GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS 420
           GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS
Sbjct: 361 GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS 420

Query: 421 DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK 480
           DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK
Sbjct: 421 DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK 480

Query: 481 LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQ 526
           LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQ
Sbjct: 481 LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQ 526

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558824|ref|XP_002520435.1| glycogen phosphorylase, putative [Ricinus communis] gi|223540277|gb|EEF41848.1| glycogen phosphorylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225434692|ref|XP_002280732.1| PREDICTED: alpha-glucan phosphorylase, H isozyme [Vitis vinifera] gi|297745953|emb|CBI16009.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104329|ref|XP_002313399.1| predicted protein [Populus trichocarpa] gi|222849807|gb|EEE87354.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450784|ref|XP_004143142.1| PREDICTED: alpha-glucan phosphorylase, H isozyme-like [Cucumis sativus] gi|449496617|ref|XP_004160181.1| PREDICTED: alpha-glucan phosphorylase, H isozyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|187370620|dbj|BAG31926.1| alpha-1,4-glucan phosphorylase H isozyme [Cucurbita maxima] Back     alignment and taxonomy information
>gi|297819302|ref|XP_002877534.1| alpha-glucan phosphorylase 2 [Arabidopsis lyrata subsp. lyrata] gi|297323372|gb|EFH53793.1| alpha-glucan phosphorylase 2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356527232|ref|XP_003532216.1| PREDICTED: alpha-glucan phosphorylase, H isozyme-like [Glycine max] Back     alignment and taxonomy information
>gi|15232704|ref|NP_190281.1| alpha-glucan phosphorylase isozyme H [Arabidopsis thaliana] gi|14916634|sp|Q9SD76.1|PHS2_ARATH RecName: Full=Alpha-glucan phosphorylase 2, cytosolic; Short=AtPHS2; AltName: Full=Alpha-glucan phosphorylase, H isozyme; AltName: Full=Starch phosphorylase H gi|6522578|emb|CAB61943.1| starch phosphorylase H (cytosolic form)-like protein [Arabidopsis thaliana] gi|19699065|gb|AAL90900.1| AT3g46970/F13I12_20 [Arabidopsis thaliana] gi|27764912|gb|AAO23577.1| At3g46970/F13I12_20 [Arabidopsis thaliana] gi|332644704|gb|AEE78225.1| alpha-glucan phosphorylase isozyme H [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356566195|ref|XP_003551320.1| PREDICTED: alpha-glucan phosphorylase, H isozyme-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
TAIR|locus:2075576 841 PHS2 "alpha-glucan phosphoryla 0.986 0.621 0.769 5.6e-226
TAIR|locus:2093787 962 PHS1 "alpha-glucan phosphoryla 0.811 0.446 0.578 3e-168
UNIPROTKB|P04045 966 P04045 "Alpha-1,4 glucan phosp 0.767 0.421 0.598 9.1e-167
UNIPROTKB|P53535 974 STP-1 "Alpha-1,4 glucan phosph 0.766 0.416 0.582 4e-164
DICTYBASE|DDB_G0281383 853 glpV "glycogen phosphorylase b 0.932 0.579 0.491 5e-131
DICTYBASE|DDB_G0291123 993 glpD "glycogen phosphorylase a 0.907 0.484 0.472 9.2e-123
ASPGD|ASPL0000059322 879 AN1015 [Emericella nidulans (t 0.871 0.525 0.492 9.5e-121
MGI|MGI:97830 842 Pygm "muscle glycogen phosphor 0.920 0.579 0.463 1.6e-116
WB|WBGene00020696 882 T22F3.3 [Caenorhabditis elegan 0.920 0.553 0.469 2.1e-116
FB|FBgn0004507 844 GlyP "Glycogen phosphorylase" 0.926 0.581 0.459 2.7e-116
TAIR|locus:2075576 PHS2 "alpha-glucan phosphorylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2181 (772.8 bits), Expect = 5.6e-226, P = 5.6e-226
 Identities = 405/526 (76%), Positives = 450/526 (85%)

Query:     4 AKANGKNEXXXXXXXXXXXXXXXXEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAES 63
             A ANGK                  + + IA NI YH +YSPHFSP KF PEQA +ATAES
Sbjct:     2 ANANGKAATSLPEKISAKANPEADDATEIAGNIVYHAKYSPHFSPLKFGPEQALYATAES 61

Query:    64 VRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHV 123
             +RDRLIQ WNETY HFNKVDPKQTYYLSME+LQGR LTNAIG+L++Q  YADAL  LG+ 
Sbjct:    62 LRDRLIQLWNETYVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADALRTLGYE 121

Query:   124 LEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEV 183
             LEEIAEQEKD            SCFLDSMATLNLPAWGYGLRYR+GLFKQ ITK+GQEE+
Sbjct:   122 LEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGLFKQIITKKGQEEI 181

Query:   184 AEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKN 243
              EDWLEKFSPWE+VRHDVVFPVRFFG V VNP+G+RKWV G+VVQA+AYD+PIPGY TKN
Sbjct:   182 PEDWLEKFSPWEIVRHDVVFPVRFFGKVQVNPDGSRKWVDGDVVQALAYDVPIPGYGTKN 241

Query:   244 TISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQ 303
             TISLRLW+AKA AED +LFQFN+G+YE AAQLHSRAQQIC VLYPGD+TE GKLLRLKQQ
Sbjct:   242 TISLRLWEAKARAEDLDLFQFNEGEYELAAQLHSRAQQICTVLYPGDATENGKLLRLKQQ 301

Query:   304 FFLCSASLQDMILRFKERKS---GRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL 360
             FFLCSASLQD+I RF ER +    R+WSEFPSKVAVQ+NDTHPTLAIPELMRLLMD+ GL
Sbjct:   302 FFLCSASLQDIISRFHERSTTEGSRKWSEFPSKVAVQMNDTHPTLAIPELMRLLMDDNGL 361

Query:   361 GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS 420
             GWDEAWD+T++TVAYTNHTVLPEALEKWSQ++MWKLLPRHMEIIEEIDKRF+  +R TR 
Sbjct:   362 GWDEAWDVTSKTVAYTNHTVLPEALEKWSQSLMWKLLPRHMEIIEEIDKRFVQTIRDTRV 421

Query:   421 DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK 480
             DLE KI S+ ILDNNP+KPVVRMANLCVVS+HTVNGVAQLHSDILKA+LFADYVS+WPNK
Sbjct:   422 DLEDKISSLSILDNNPQKPVVRMANLCVVSSHTVNGVAQLHSDILKAELFADYVSIWPNK 481

Query:   481 LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQ 526
              QNKTNGITPRRWLRFC+PELS IITKWLKTD+W+T+LDLL GLRQ
Sbjct:   482 FQNKTNGITPRRWLRFCSPELSDIITKWLKTDKWITDLDLLTGLRQ 527
GO:0004645 "phosphorylase activity" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA;TAS
GO:0009414 "response to water deprivation" evidence=IMP
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0009507 "chloroplast" evidence=IDA
GO:0019252 "starch biosynthetic process" evidence=RCA
TAIR|locus:2093787 PHS1 "alpha-glucan phosphorylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P04045 P04045 "Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic" [Solanum tuberosum (taxid:4113)] Back     alignment and assigned GO terms
UNIPROTKB|P53535 STP-1 "Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic" [Solanum tuberosum (taxid:4113)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281383 glpV "glycogen phosphorylase b" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291123 glpD "glycogen phosphorylase a" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000059322 AN1015 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:97830 Pygm "muscle glycogen phosphorylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00020696 T22F3.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0004507 GlyP "Glycogen phosphorylase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SD76PHS2_ARATH2, ., 4, ., 1, ., 10.80600.98670.6218yesno
P32811PHSH_SOLTU2, ., 4, ., 1, ., 10.80610.97160.6145N/Ano
Q9LKJ3PHSH_WHEAT2, ., 4, ., 1, ., 10.80500.96220.6129N/Ano
P53537PHSH_VICFA2, ., 4, ., 1, ., 10.79190.98670.6211N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.10.963
4th Layer2.4.1.10.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024166001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity) (842 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015571001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (755 aa)
•  • •• 0.956
GSVIVG00017037001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (501 aa)
•    •• 0.945
GSVIVG00037251001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (552 aa)
•    •• 0.942
GSVIVG00020983001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (507 aa)
•    •• 0.942
GSVIVG00028257001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (445 aa)
•    •• 0.939
GSVIVG00010600001
SubName- Full=Chromosome chr16 scaffold_271, whole genome shotgun sequence; (621 aa)
•  • •• 0.936
GSVIVG00029046001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (509 aa)
•    •• 0.935
GSVIVG00030550001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (581 aa)
•  • •• 0.934
GSVIVG00019926001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (520 aa)
•    •• 0.930
GSVIVG00014579001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (519 aa)
•    •• 0.930

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
cd04300 797 cd04300, GT1_Glycogen_Phosphorylase, This is a fam 0.0
TIGR02093 794 TIGR02093, P_ylase, glycogen/starch/alpha-glucan p 0.0
pfam00343 712 pfam00343, Phosphorylase, Carbohydrate phosphoryla 0.0
PRK14985 798 PRK14985, PRK14985, maltodextrin phosphorylase; Pr 1e-160
PRK14986 815 PRK14986, PRK14986, glycogen phosphorylase; Provis 1e-155
COG0058 750 COG0058, GlgP, Glucan phosphorylase [Carbohydrate 1e-153
TIGR02094 601 TIGR02094, more_P_ylases, alpha-glucan phosphoryla 7e-15
cd04299 778 cd04299, GT1_Glycogen_Phosphorylase_like, This fam 2e-13
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of oligosaccharide phosphorylases Back     alignment and domain information 
 Score =  800 bits (2068), Expect = 0.0
 Identities = 271/497 (54%), Positives = 341/497 (68%), Gaps = 8/497 (1%)

Query: 33  ASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSM 92
              I  H++Y+    P +      + A A +VRDRL+++WN T  ++   D K+ YYLS+
Sbjct: 1   KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSL 60

Query: 93  EFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSM 152
           EFL GR L N + +L + +   +AL  LG  LE++ EQE DA LGNGGLGRLA+CFLDS+
Sbjct: 61  EFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSL 120

Query: 153 ATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVM 212
           ATL LP +GYG+RY YGLFKQKI    Q E+ ++WL   +PWE+ R DV  PVRF G V 
Sbjct: 121 ATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRVE 180

Query: 213 VNPNGTR---KWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
              +G R   +WV GE V AV YD PIPGY T    +LRLW A+AS E+F+L  FN G Y
Sbjct: 181 HYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAEAS-EEFDLDAFNRGDY 239

Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSE 329
             A +  +RA+ I  VLYP DSTEEGK LRLKQQ+F  SASLQD+I RFK  K+    SE
Sbjct: 240 IRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFK--KTHGPLSE 297

Query: 330 FPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWS 389
           FP KVA+QLNDTHP LAIPELMR+L+DEEGL WDEAWDITT+T AYTNHT+LPEALEKW 
Sbjct: 298 FPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWP 357

Query: 390 QAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVV 449
             +  +LLPRH+EII EI++RF+  VR+     E +I  M I++   +K  VRMA+L +V
Sbjct: 358 VDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSIIEEGGEK-QVRMAHLAIV 416

Query: 450 SAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWL 509
            +H+VNGVA LHS++LK  +F D+  L+P K  NKTNGITPRRWL   NP LS +IT+ +
Sbjct: 417 GSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETI 476

Query: 510 KTDQWVTNLDLLVGLRQ 526
             D WVT+LD L  L  
Sbjct: 477 GDD-WVTDLDQLKKLEP 492

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 797
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase Back     alignment and domain information
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases Back     alignment and domain information
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 530
KOG2099 843 consensus Glycogen phosphorylase [Carbohydrate tra 100.0
TIGR02093 794 P_ylase glycogen/starch/alpha-glucan phosphorylase 100.0
cd04300 797 GT1_Glycogen_Phosphorylase This is a family of oli 100.0
PRK14985 798 maltodextrin phosphorylase; Provisional 100.0
PRK14986 815 glycogen phosphorylase; Provisional 100.0
PF00343 713 Phosphorylase: Carbohydrate phosphorylase; InterPr 100.0
COG0058 750 GlgP Glucan phosphorylase [Carbohydrate transport 100.0
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 100.0
TIGR02094 601 more_P_ylases alpha-glucan phosphorylases. This fa 100.0
cd03791 476 GT1_Glycogen_synthase_DULL1_like This family is mo 98.56
TIGR02095 473 glgA glycogen/starch synthases, ADP-glucose type. 98.32
PLN02939 977 transferase, transferring glycosyl groups 97.97
PF08323245 Glyco_transf_5: Starch synthase catalytic domain; 97.85
PRK00654 466 glgA glycogen synthase; Provisional 97.8
PRK14098 489 glycogen synthase; Provisional 97.62
PF11897118 DUF3417: Protein of unknown function (DUF3417); In 96.82
PRK14099 485 glycogen synthase; Provisional 96.63
PLN023161036 synthase/transferase 92.99
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.8e-181  Score=1417.73  Aligned_cols=516  Identities=51%  Similarity=0.891  Sum_probs=503.9

Q ss_pred             cchhhhhcccccccCCCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEE
Q 009651            9 KNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTY   88 (530)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~~~~~w~~t~~~~~~~~~k~vy   88 (530)
                      -+++++||||++++.+...++.++++.|.+|+++++.+++..+++.+.|.|+|.+|||.++.+|++|+++|.+.++||||
T Consensus         5 ~~~~~~r~qis~r~~~~~~~~~e~~~~f~~H~~ftl~k~~~~~~~~~~yfA~a~tvRD~Lv~~W~rTqqhy~~~dpKrvY   84 (843)
T KOG2099|consen    5 LIDSEKRKQISVRGIAGVEDVAEVKKSFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRVY   84 (843)
T ss_pred             ccccchhhhcchhcccCCccHHHHHHHHHhheeeeeecCcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceee
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEehhhcccchhHHHhhcCCcHHHHHHHHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCC
Q 009651           89 YLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRY  168 (530)
Q Consensus        89 Y~SmEfl~Gr~L~nnl~nlg~~~~~~eaL~~lG~~~~~i~~~E~D~~LgnGGLGrLAacfLdS~AtL~lP~~G~GirY~y  168 (530)
                      ||||||+|||+|+|+++||||...+.+||.+||+|+|+|+|+|+||||||||||||||||||||||||+|++||||||+|
T Consensus        85 YLSlEf~mGRaL~Ntm~Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYey  164 (843)
T KOG2099|consen   85 YLSLEFYMGRALQNTMINLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEY  164 (843)
T ss_pred             EeehHHhhhhHHHHHHHhccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEeCCeeeeecccccccCCCcccccCCeEEEEEECCeEEecCCCceeeeCCeEEEEEEeeeccCCCCCCceEEEE
Q 009651          169 GLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLR  248 (530)
Q Consensus       169 G~F~Q~I~dG~QvE~pd~Wl~~g~pwe~~r~~~~~~V~f~G~v~~~~~g~~~w~~~~~V~av~yD~pi~Gy~~~~~n~LR  248 (530)
                      |+|+|+|.+|||+|.||+||+.|||||+.|+++.+||+|+|+|+...+| .+|++++.|.|+|||+|||||+|++||+||
T Consensus       165 GiF~QkI~~g~Q~E~~ddWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g-~kWid~q~V~A~~YD~PvPGyk~n~vntlR  243 (843)
T KOG2099|consen  165 GIFKQKITDGWQVEEPDDWLRYGNPWEKARPEVMLPVHFYGKVEHTPDG-SKWIDTQVVLAMPYDTPVPGYKNNTVNTLR  243 (843)
T ss_pred             hhHHHHhcCCccccchHHHHHcCCchhhcCcceEeEEEEEEEEEeCCCc-ceeecceeEEEeccCCCCCCcccCcceeee
Confidence            9999999999999999999999999999999999999999999987777 569999999999999999999999999999


Q ss_pred             EEecccCCcccCccCCCcchhhhHHhhhhhhhcceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHcccC----
Q 009651          249 LWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----  324 (530)
Q Consensus       249 LW~a~v~~~~~~l~~~~~g~y~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRLkQeyfl~~aslqdiir~~~~~~gg----  324 (530)
                      ||+|+ ++++|||..||.|+|.+|+.+++.+|+||+||||+|+..+||+||||||||+++||+|||||||+...+|    
T Consensus       244 LWsak-a~~df~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~  322 (843)
T KOG2099|consen  244 LWSAK-APNDFDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREP  322 (843)
T ss_pred             eeccC-CCCCCCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCcccc
Confidence            99999 8889999999999999999999999999999999999999999999999999999999999999966543    


Q ss_pred             --cccccCCCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhceeeeeccccccccccCcHHHHHHHchHHHH
Q 009651          325 --RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHME  402 (530)
Q Consensus       325 --~~l~~l~~~~~ihlNDtHpalai~ELmR~L~de~gl~wd~A~~iv~~~~~yTnHT~lpealE~wp~~l~~~lLpr~~~  402 (530)
                        ..++.||++++||||||||+||||||||+|||.+|++||+||+||.+||+|||||+||||||+||++||+++||||+|
T Consensus       323 ~~~~~~~FPdkVAiQlNDTHPtLaIpELmRiLvD~e~l~W~~AWdit~kT~AYTNHTVlpEALErWp~~L~e~LLPRHle  402 (843)
T KOG2099|consen  323 VRTNFEEFPDKVAIQLNDTHPTLAIPELMRILVDLEGLDWDKAWDITQKTCAYTNHTVLPEALERWPVSLMEKLLPRHLE  402 (843)
T ss_pred             cccchhhCcHhheeeccCCCccccHHHHHHHHHhcccCCHHHHHHHhhhheeeccccccHHHHHHhhHHHHHHhhhHHHH
Confidence              349999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCChhhhhcccccccCCCCC--eeeeeehhhccCCchhhhHHHhHHHHHHhhhccchhccCCC
Q 009651          403 IIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKP--VVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK  480 (530)
Q Consensus       403 iI~eIn~~f~~~~~~~~~~~~~~~~~lsii~~~~~~~--~v~Ma~Lai~~S~~vNGVS~lHseilk~~~f~df~~l~P~k  480 (530)
                      |||+||.+|++.+.++||+|.|++++||||++  +.+  ++|||||||+|||.|||||+|||+|+|+.+|+||+++||+|
T Consensus       403 IIy~In~~~l~~i~~~fp~D~drlrrmsiiee--~~~~k~i~MA~L~ivgsHaVNGVa~iHSeilK~~~F~Df~e~~P~K  480 (843)
T KOG2099|consen  403 IIYEINQRFLQTVAAKFPGDVDRLRRMSIIEE--NSPEKRINMAHLCIVGSHAVNGVAEIHSEILKQSVFKDFYELEPEK  480 (843)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHhhhhhhhc--CCccceeeeeeeeeecccccccHHHHHHHHHHHHHHHHHHHhChHH
Confidence            99999999999999999999999999999999  533  99999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcccccccCChHHHHHHHhhcCCcccccCHHhHHHHHhhhh
Q 009651          481 LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQVYM  529 (530)
Q Consensus       481 f~n~TNGVt~rrWl~~~Np~L~~li~~~iG~~~W~~dl~~L~~L~~~~~  529 (530)
                      |+||||||||||||.+|||.|+++|++.||+ +|++|+++|.+|++|++
T Consensus       481 FqNkTNGITPRRWL~~cnP~LadlI~e~ige-~~i~dl~~l~~L~~~a~  528 (843)
T KOG2099|consen  481 FQNKTNGITPRRWLLLCNPGLADLITEKIGE-EWITDLDQLTKLRKFAD  528 (843)
T ss_pred             hccccCCcCHHHHHHhcCchHHHHHHHHhhh-HhhhhHHHHHHHHHhcc
Confidence            9999999999999999999999999999996 99999999999999987

>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases Back     alignment and domain information
>PRK14985 maltodextrin phosphorylase; Provisional Back     alignment and domain information
>PRK14986 glycogen phosphorylase; Provisional Back     alignment and domain information
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family Back     alignment and domain information
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
1z8d_A 842 Crystal Structure Of Human Muscle Glycogen Phosphor 1e-124
4ej2_A 825 Crystal Structure Of Gpb In Complex With Dk10 Lengt 1e-123
1ygp_B 879 Phosphorylated Form Of Yeast Glycogen Phosphorylase 1e-123
2gm9_A 825 Structure Of Rabbit Muscle Glycogen Phosphorylase I 1e-123
2ffr_A 825 Crystallographic Studies On N-Azido-Beta-D-Glucopyr 1e-123
2gj4_A 824 Structure Of Rabbit Muscle Glycogen Phosphorylase I 1e-123
1pyg_A 842 Structural Basis For The Activation Of Glycogen Pho 1e-123
3nc4_A 841 The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbaz 1e-123
2pyd_A 843 The Crystal Structure Of Glycogen Phosphorylase In 1e-123
1c8l_A 842 Synergistic Inhibition Of Glycogen Phosphorylase A 1e-123
2g9q_A 842 The Crystal Structure Of The Glycogen Phosphorylase 1e-123
1c50_A 830 Identification And Structural Characterization Of A 1e-122
1gpa_A 842 Structural Mechanism For Glycogen Phosphorylase Con 1e-122
1abb_A 828 Control Of Phosphorylase B Conformation By A Modifi 1e-122
7gpb_A 842 Structural Mechanism For Glycogen Phosphorylase Con 1e-122
1z6p_A 842 Glycogen Phosphorylase Amp Site Inhibitor Complex L 1e-122
1noi_A 842 Complex Of Glycogen Phosphorylase With A Transition 1e-122
1em6_A 847 Human Liver Glycogen Phosphorylase A Complexed With 1e-119
2zb2_A 849 Human Liver Glycogen Phosphorylase A Complexed With 1e-119
1fa9_A 846 Human Liver Glycogen Phosphorylase A Complexed With 1e-119
2qll_A 847 Human Liver Glycogen Phosphorylase- Gl Complex Leng 1e-119
3dds_A 848 Crystal Structure Of Glycogen Phosphorylase Complex 1e-119
1fc0_A 846 Human Liver Glycogen Phosphorylase Complexed With N 1e-119
3ceh_A 809 Human Liver Glycogen Phosphorylase (Tense State) In 1e-119
1xoi_A 846 Human Liver Glycogen Phosphorylase A Complexed With 1e-119
1l5v_A 796 Crystal Structure Of The Maltodextrin Phosphorylase 9e-96
1ahp_A 797 Oligosaccharide Substrate Binding In Escherichia Co 2e-95
2ecp_A 796 The Crystal Structure Of The E. Coli Maltodextrin P 3e-95
1qm5_A 796 Phosphorylase Recognition And Phosphorylysis Of Its 3e-95
2c4m_A 796 Starch Phosphorylase: Structural Studies Explain Ox 6e-93
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose Length = 842 Back     alignment and structure 
Iteration: 1

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/501 (45%), Positives = 318/501 (63%), Gaps = 10/501 (1%)
Query: 30  SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
           + +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + DPK+ YY
Sbjct: 26  TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 85
Query: 90  LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
           LS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D            +CFL
Sbjct: 86  LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 145
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
           DSMATL L A+GYG+RY +G+F QKI+   Q E A+DWL   +PWE  R +   PV F+G
Sbjct: 146 DSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 205
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
            V     G  KWV  +VV A+ YD P+PGY+     ++RLW AKA   DFNL  FN G Y
Sbjct: 206 HVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 263
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
             A    + A+ I  VLYP D+  EGK LRLKQ++F+ +A+LQD+I RFK  K G     
Sbjct: 264 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 323
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
              +  FP KVA+QLNDTHP+LAIPELMR+L+D E + WD+AWD+T RT AYTNHTVLPE
Sbjct: 324 RTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWDKAWDVTVRTCAYTNHTVLPE 383
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
           ALE+W   ++  LLPRH++II EI++RF+  V +       ++  M +++    K  + M
Sbjct: 384 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 442
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
           A+LC+  +H VNGVA++HS+ILK  +F D+  L P+K QNKTNGITPRRWL  CNP L++
Sbjct: 443 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 502
Query: 504 IITKWLKTDQWVTNLDLLVGL 524
           +I + +  D ++++LD L  L
Sbjct: 503 VIAERIGED-FISDLDQLRKL 522
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10 Length = 825 Back     alignment and structure
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Thienopyrrole Length = 825 Back     alignment and structure
>pdb|2FFR|A Chain A, Crystallographic Studies On N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D- Glucopyranosylamine Length = 825 Back     alignment and structure
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand Length = 824 Back     alignment and structure
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen Phosphorylase B By Adenosine Monophosphate Length = 842 Back     alignment and structure
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone Derivatives To Glycogen Phosphorylase: A New Class Of Inhibitors Length = 841 Back     alignment and structure
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex With Glucose At 100 K Length = 843 Back     alignment and structure
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A Potential Antidiabetic Drug And Caffeine Length = 842 Back     alignment and structure
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab Complex Length = 842 Back     alignment and structure
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel Allosteric Binding Site Of Glycogen Phosphorylase B Length = 830 Back     alignment and structure
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842 Back     alignment and structure
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified Cofactor: Crystallographic Studies On R-State Glycogen Phosphorylase Reconstituted With Pyridoxal 5'-Diphosphate Length = 828 Back     alignment and structure
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842 Back     alignment and structure
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex Length = 842 Back     alignment and structure
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State Analogue Nojirimycin Tetrazole And Phosphate In The T And R States Length = 842 Back     alignment and structure
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac And Cp-526, 423 Length = 847 Back     alignment and structure
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose And 5- Chloro-N-[4-(1, 2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide Length = 849 Back     alignment and structure
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp Length = 846 Back     alignment and structure
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex Length = 847 Back     alignment and structure
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With An Anthranilimide Based Inhibitor Gsk261 Length = 848 Back     alignment and structure
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With N-Acetyl-Beta-D- Glucopyranosylamine Length = 846 Back     alignment and structure
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In Complex With The Allosteric Inhibitor Ave5688 Length = 809 Back     alignment and structure
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Chloroindoloyl Glycine Amide Length = 846 Back     alignment and structure
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase Complexed With Glucose-1-Phosphate Length = 796 Back     alignment and structure
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli Maltodextrin Phsphorylase Length = 797 Back     alignment and structure
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin Phosphorylase Complex Length = 796 Back     alignment and structure
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question Length = 796 Back     alignment and structure
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion- Dependent Kinetic Stability And Regulatory Control. Length = 796 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 0.0
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 0.0
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 0.0
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Length = 824 Back     alignment and structure
 Score =  795 bits (2057), Expect = 0.0
 Identities = 239/516 (46%), Positives = 329/516 (63%), Gaps = 10/516 (1%)

Query: 17  KIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETY 76
           +I           + +  N + H+ ++         P   +FA A +VRD L+ +W  T 
Sbjct: 1   QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60

Query: 77  HHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAAL 136
            H+ + DPK+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+DA L
Sbjct: 61  QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120

Query: 137 GNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEV 196
           GNGGLGRLA+CFLDSMATL L A+GYG+RY +G+F QKI    Q E A+DWL   +PWE 
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180

Query: 197 VRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASA 256
            R +   PV F+G V     G + WV  +VV A+ YD P+PGY+     ++RLW AKA  
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAK-WVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP- 238

Query: 257 EDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMIL 316
            DFNL  FN G Y  A    + A+ I  VLYP D+  EGK LRLKQ++F+ +A+LQD+I 
Sbjct: 239 NDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIR 298

Query: 317 RFKERK------SGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITT 370
           RFK  K          +  FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T 
Sbjct: 299 RFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTV 358

Query: 371 RTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMC 430
           +T AYTNHTVLPEALE+W   ++  LLPRH++II EI++RF+  V +       ++  M 
Sbjct: 359 KTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMS 418

Query: 431 ILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITP 490
           +++    K  + MA+LC+  +H VNGVA++HS+ILK  +F D+  L P+K QNKTNGITP
Sbjct: 419 LVEEGAVK-RINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITP 477

Query: 491 RRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQ 526
           RRWL  CNP L++II + +  + ++++LD L  L  
Sbjct: 478 RRWLVLCNPGLAEIIAERIGEE-YISDLDQLRKLLS 512
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Length = 796 Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Length = 796 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query530
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 100.0
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 100.0
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 100.0
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 100.0
3vue_A 536 GBSS-I, granule-bound starch synthase 1, chloropla 97.26
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 530
d1ygpa_ 876 c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeas 0.0
d2gj4a1 824 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit 0.0
d1l5wa_ 796 c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {E 1e-173
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 824 Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Length = 796 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query530
d1ygpa_ 876 Glycogen phosphorylase {Baker's yeast (Saccharomyc 100.0
d2gj4a1 824 Glycogen phosphorylase {Rabbit (Oryctolagus cunicu 100.0
d1l5wa_ 796 Maltodextrin phosphorylase (MALP) {Escherichia col 100.0
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure