Citrus Sinensis ID: 009653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
Protein Sequence
MCHQMLSRHFHIAYFGQLRYCFKMESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENMEFMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCMVTSNSFCGPESGSKISSSCMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILFPERYEPVKQIKFSERPPYSPQLAVPNTNEQLLTKSSLYQGNKKQHRLAIPLDTALTFQDSSGISHSSGALSLLSAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQNFVKTSGTTPLGKYETKGFYTSGMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQHTDDL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccEEEEEEEcccccccccccEEEcccccccccHHHHHcccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHcccccccccccEEEEcccEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccEEEEEEcccccEccccccEEEccccccccccHHccccccEccccccccccccccccccccEEccccHHHccccHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEcccccEEcccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHHHHHccHHHHcccccHHHHHHHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEEEcccccccccEEcccccccccccEEEHHHHcHHHHHHHHHHcccEEEEccccc
Coil and Loop (DISEMBL)
MCHQMLSRHFHIAYFGQLRYCFKMeswiygsegkgilysdevdssvdpftrsRKTLmaweskpsynfdinklfsdsddvenMEFMDlcftdltrkpchsnsslgtpngevgsdtnerltttpcmvtsnsfcgpesgskissSCMKSISQDSALIDlklgrlvdgrdkqcgklfkersvassahpslmakkvrttsscsqtplcqvygcnkdlssskdyhkrhkvcdvhsktpkvivngNEQRFCQQCSRFHllaefddskRSCRRRLAghnerrrkpqfnihsdRSRKLLQLyqgselpwtslqngtsfvypdmlpggilfperyepvkqikfserppyspqlavpntneqlltksslyqgnkkqhrlaipldtaltfqdssgishssgALSLLSAqsqsmpnhlsgipmarplisqVSHTHLnlgqnfvktsgttplgkyetkgfytsgmnsmdgaqmrslmvpdaghafelkvetdevsqesdffkdkncyspeqgfTVDLIQLSSHLKRVEQQrnsiqpkqhtddl
Flexible Loop (DISEMBL)
MCHQMLSRHFHIAYFGQLRYCFKMESWIYGSEGKGILYSDEVDSSVDPFTRSRKTlmaweskpsynfdINKLFSDSDDVENMEFMDLCFTDLTRKPCHsnsslgtpngevgsdtneRLTTTPCMVTSNSFCGPESGSKISSSCMKSISQDSALIDLKLGRLVDGRDKQCGKLFkersvassahpslmakkvrttsscsqtplCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLlaefddskrscrrrlaghnerrrkpqfnihsdrsRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILFPERYEPVKQIKFSERPPYSPQLAVPNTNEQLLTKSSLYQGNKKQHRLAIPLDTALTFQDSSGISHSSGALSLLSAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQnfvktsgttplgKYETKGFYTSGMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLSSHLKRVeqqrnsiqpkqhtddl
Low Complexity Region (SEG)
MCHQMLSRHFHIAYFGQLRYCFKMESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENMEFMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCMVTSNSFCGPEsgskissscmksisqdsALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILFPERYEPVKQIKFSERPPYSPQLAVPNTNEQLLTKSSLYQGNKKQHRLAIPLDTALTFQDssgishssgalsllsaqsqsMPNHLSGIPMARPLISQVSHTHLNLGQNFVKTSGTTPLGKYETKGFYTSGMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQHTDDL
Disordered region (IsUnstruct)
***************************************************************SYNFDINKLFSDSDDVENMEFMDLCFTDLTR*********************************************************ALIDLKLGRLVDGRD*QCG*****************************TPLCQVYGCNKDLS**KDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD*******************************LLQLYQGSELPWTSLQNGTSFVYPDMLPGGILFPERYEPVKQI*************************************AIPLD****************************************LISQVSHTHLNLGQNFVKTSGTTPLGKYETKGFYT*************************************FFKDKNCYSPEQGFTVDLIQL***********************
Disordered Region (DISOPRED)
******SRHFHIAYFGQLRYCFKMESWIYGSEGKGILYSDE***************MAWESKPSYNFDINKLFSDSDDVENMEFMDL*********************************************************************KLGRLVDG****************************************VYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRS**********************************************************************************************************************************************************************************************************************************************VDLIQL***********************
Disordered Region (DISEMBL)
MCHQMLSRHFHIAYFGQLRYCFKMESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENMEFMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCMVTSNSFCG*************SISQDSALIDLKLGRLVDGRDKQCGKLFK************************QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILFPERYEPVKQIKFSERPPYSPQLAVPNTNEQLLTKSSLYQGNKKQHRLAIPLDTALTFQDSSGISHSSGALSLLSAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQNFVKTSGTTPLGKYETKGFYTSGMNSMDGAQMRSLMVPDAGHAFELKV**********FFKDKNCYSPEQGFTVDLIQLSSHL*******************
Disordered Region (DISPRO)
*CHQMLSRHFHIAYFGQLRYCFKMESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENMEFMDLCFTDLTRKPC***S****************************FC*********************LIDLKLGRLVDGR*********************************QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRR*********************************WTSLQNGTSFVYPDMLPGGILFPERYEPVKQIKF**R**YSP*****************************************************************************************************TKGFYTSGMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCHQMLSRHFHIAYFGQLRYCFKMESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENMEFMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCMVTSNSFCGPESGSKISSSCMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILFPERYEPVKQIKFSERPPYSPQLAVPNTNEQLLTKSSLYQGNKKQHRLAIPLDTALTFQDSSGISHSSGALSLLSAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQNFVKTSGTTPLGKYETKGFYTSGMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQHTDDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	529	2.2.26 [Sep-21-2011]
Q94JW8	405	Squamosa promoter-binding	yes	no	0.570	0.745	0.403	2e-51
A2YGR5	475	Squamosa promoter-binding	N/A	no	0.279	0.311	0.496	9e-35
Q5Z818	475	Squamosa promoter-binding	yes	no	0.279	0.311	0.496	9e-35
A3A2Z8	469	Squamosa promoter-binding	no	no	0.238	0.268	0.601	3e-33
A2X0Q6	469	Squamosa promoter-binding	N/A	no	0.238	0.268	0.601	3e-33
P0DI11	359	Squamosa promoter-binding	no	no	0.207	0.306	0.596	2e-32
B9DI20	359	Squamosa promoter-binding	no	no	0.207	0.306	0.596	2e-32
Q8S9L0	396	Squamosa promoter-binding	no	no	0.217	0.290	0.544	1e-31
Q01JD1	360	Squamosa promoter-binding	N/A	no	0.166	0.244	0.636	2e-31
Q7XT42	360	Squamosa promoter-binding	no	no	0.166	0.244	0.636	2e-31

>sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 190/369 (51%), Gaps = 67/369 (18%)

Query: 154 IDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTPLCQVYGCNKDLS 213
           ID KL   +D        L  +    SS   +L +KK R ++ CSQ PLCQVYGC+KDLS
Sbjct: 83  IDFKLRSFLD--------LGNDDDDTSSRGFALPSKKSRASNLCSQNPLCQVYGCSKDLS 134

Query: 214 SSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNER 273
           SSKDYHKRH+VC+ HSKT  VIVNG EQRFCQQCSRFH L+EFDD KRSCRRRLAGHNER
Sbjct: 135 SSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNER 194

Query: 274 RRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILF----PERYEPVK 329
           RRKP F     +  KLL+  Q  ++        +S V P+  PG +L+     + +   +
Sbjct: 195 RRKPAFYFLPGKRHKLLRTSQ--DVVGNKFLENSSLVLPESFPGSLLYRVIDEDDHRTSR 252

Query: 330 QIKFSERPPYSPQLAVPNTNEQLLTKSSLYQGNKKQHRLAIPLDTALTFQDSSGISHSSG 389
            + F + P  S     P TNEQ    S  Y+     +   +   +++     +  S S+ 
Sbjct: 253 LVSFKDEPTCS---MFP-TNEQ--NSSRTYESKPAIYSTEV---SSIWDLHETAASRSTR 303

Query: 390 ALSLLSAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQNFVKTSGTTPLGKYETKGFYTS 449
           ALSLLSAQSQ    HLS  P     I+Q +       QN   +S T              
Sbjct: 304 ALSLLSAQSQ---QHLSKFPNTTFSITQPN-------QNLNHSSST-------------- 339

Query: 450 GMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLSSH 509
                D  QM   +  D G       +T+     S   K  +        TVDL+QLSSH
Sbjct: 340 -----DYHQMEQPLWIDPG-------KTNSAGSSSCKGKGTS--------TVDLLQLSSH 379

Query: 510 LKRVEQQRN 518
           L+R+EQQRN
Sbjct: 380 LQRIEQQRN 388

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Arabidopsis thaliana (taxid: 3702)

>sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1

 Score =  148 bits (374), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 99/149 (66%), Gaps = 1/149 (0%)

Query: 146 SISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAH-PSLMAKKVRTTSSCSQTPLCQ 204
           ++S    +I LKLG+     +   G+  K  S AS    PS + KK++ +   +Q+  CQ
Sbjct: 122 AVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSSYCQ 181

Query: 205 VYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCR 264
           V GC  DLSS+++YH++HKVC+ HSK PKVIV+G E+RFCQQCSRFH LAEFD  K+SCR
Sbjct: 182 VEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCR 241

Query: 265 RRLAGHNERRRKPQFNIHSDRSRKLLQLY 293
           RRL+ HN RRRKPQ    S  S +L  ++
Sbjct: 242 RRLSDHNARRRKPQQEAISFGSSRLATMF 270

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z818|SPL12_ORYSJ Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1

 Score =  148 bits (374), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 99/149 (66%), Gaps = 1/149 (0%)

Query: 146 SISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAH-PSLMAKKVRTTSSCSQTPLCQ 204
           ++S    +I LKLG+     +   G+  K  S AS    PS + KK++ +   +Q+  CQ
Sbjct: 122 AVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSSYCQ 181

Query: 205 VYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCR 264
           V GC  DLSS+++YH++HKVC+ HSK PKVIV+G E+RFCQQCSRFH LAEFD  K+SCR
Sbjct: 182 VEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCR 241

Query: 265 RRLAGHNERRRKPQFNIHSDRSRKLLQLY 293
           RRL+ HN RRRKPQ    S  S +L  ++
Sbjct: 242 RRLSDHNARRRKPQQEAISFGSSRLATMF 270

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A3A2Z8|SPL3_ORYSJ Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/128 (60%), Positives = 88/128 (68%), Gaps = 2/128 (1%)

Query: 153 LIDLKLGRLVDGRDKQCGKLFKER-SVASSAHPSL-MAKKVRTTSSCSQTPLCQVYGCNK 210
           LI LKLG+     D   G+  K   S  S A PS  +AKKV+     +Q P CQV GCN 
Sbjct: 130 LIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQNPHCQVEGCNV 189

Query: 211 DLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGH 270
           DLSS+K YH++H+VC+ HSKT KVIV G E+RFCQQCSRFH LAEFD  KRSCRRRL  H
Sbjct: 190 DLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDH 249

Query: 271 NERRRKPQ 278
           N RRRKPQ
Sbjct: 250 NARRRKPQ 257

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X0Q6|SPL3_ORYSI Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/128 (60%), Positives = 88/128 (68%), Gaps = 2/128 (1%)

Query: 153 LIDLKLGRLVDGRDKQCGKLFKER-SVASSAHPSL-MAKKVRTTSSCSQTPLCQVYGCNK 210
           LI LKLG+     D   G+  K   S  S A PS  +AKKV+     +Q P CQV GCN 
Sbjct: 130 LIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQNPHCQVEGCNV 189

Query: 211 DLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGH 270
           DLSS+K YH++H+VC+ HSKT KVIV G E+RFCQQCSRFH LAEFD  KRSCRRRL  H
Sbjct: 190 DLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDH 249

Query: 271 NERRRKPQ 278
           N RRRKPQ
Sbjct: 250 NARRRKPQ 257

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P0DI11|SP13B_ARATH Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana GN=SPL13B PE=3 SV=1

 Score =  141 bits (355), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 81/114 (71%), Gaps = 4/114 (3%)

Query: 199 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDD 258
           Q P+C V GC+ D S+ ++YHKRHKVCDVHSKTP V +NG++QRFCQQCSRFH L EFD+
Sbjct: 97  QMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDE 156

Query: 259 SKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYP 312
            KRSCR+RL GHN RRRKPQ   H  R       +QGS+L   S   G S V+P
Sbjct: 157 GKRSCRKRLDGHNRRRRKPQPE-HIGRPANFFTGFQGSKLLEFS---GGSHVFP 206

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana GN=SPL13A PE=2 SV=1

 Score =  141 bits (355), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 81/114 (71%), Gaps = 4/114 (3%)

Query: 199 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDD 258
           Q P+C V GC+ D S+ ++YHKRHKVCDVHSKTP V +NG++QRFCQQCSRFH L EFD+
Sbjct: 97  QMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDE 156

Query: 259 SKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYP 312
            KRSCR+RL GHN RRRKPQ   H  R       +QGS+L   S   G S V+P
Sbjct: 157 GKRSCRKRLDGHNRRRRKPQPE-HIGRPANFFTGFQGSKLLEFS---GGSHVFP 206

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S9L0|SPL10_ARATH Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 91/125 (72%), Gaps = 10/125 (8%)

Query: 184 PSLMAKKVRTTSSCSQT---PLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNE 240
           PS++A+K   T SC Q+   P CQ+ GC  DLSSSKDYH++H+VC+ HSK PKV+V+G E
Sbjct: 156 PSVVARK--KTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLE 213

Query: 241 QRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQ--FNIHSDRSRKLLQLYQGSEL 298
           +RFCQQCSRFH ++EFD+ KRSCR+RL+ HN RRRKPQ  F ++S+R   +    Q + +
Sbjct: 214 RRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQGVFPLNSER---VFDRRQHTSM 270

Query: 299 PWTSL 303
            W  L
Sbjct: 271 LWNGL 275

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01JD1|SPL7_ORYSI Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. indica GN=SPL7 PE=2 SV=1

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 72/88 (81%)

Query: 189 KKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCS 248
           +K +  ++    P CQV GC+  L   K+YH+RHKVC+VH+K P+V+V+G EQRFCQQCS
Sbjct: 94  RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCS 153

Query: 249 RFHLLAEFDDSKRSCRRRLAGHNERRRK 276
           RFH+LAEFDD+K+SCRRRLAGHNERRR+
Sbjct: 154 RFHVLAEFDDAKKSCRRRLAGHNERRRR 181

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7XT42|SPL7_ORYSJ Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 72/88 (81%)

Query: 189 KKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCS 248
           +K +  ++    P CQV GC+  L   K+YH+RHKVC+VH+K P+V+V+G EQRFCQQCS
Sbjct: 94  RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCS 153

Query: 249 RFHLLAEFDDSKRSCRRRLAGHNERRRK 276
           RFH+LAEFDD+K+SCRRRLAGHNERRR+
Sbjct: 154 RFHVLAEFDDAKKSCRRRLAGHNERRRR 181

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
359472829	611	PREDICTED: squamosa promoter-binding-lik	0.973	0.842	0.516	1e-131
255541980	512	LIGULELESS1 protein, putative [Ricinus c	0.903	0.933	0.508	1e-125
297738116	498	unnamed protein product [Vitis vinifera]	0.877	0.931	0.532	1e-120
224108868	600	hypothetical protein POPTRDRAFT_769914 [	0.930	0.82	0.484	1e-117
356502645	482	PREDICTED: squamosa promoter-binding-lik	0.869	0.954	0.439	2e-94
356498035	482	PREDICTED: squamosa promoter-binding-lik	0.879	0.964	0.420	2e-92
225456548	557	PREDICTED: squamosa promoter-binding-lik	0.937	0.890	0.439	1e-88
449441121	550	PREDICTED: uncharacterized protein LOC10	0.926	0.890	0.399	8e-86
449522424	510	PREDICTED: squamosa promoter-binding-lik	0.831	0.862	0.399	3e-78
255547135	557	LIGULELESS1 protein, putative [Ricinus c	0.931	0.885	0.407	4e-78

>gi|359472829|ref|XP_002273534.2| PREDICTED: squamosa promoter-binding-like protein 6-like [Vitis vinifera]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 274/530 (51%), Positives = 342/530 (64%), Gaps = 15/530 (2%)

Query: 14  YFGQLRYCFKMESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLF 73
           +   L     MESW +  E K  LYS+E+D + D   RSRK L  W+ +  +NF+ + L 
Sbjct: 77  FSANLDAVLLMESWSHALEKKMFLYSEEMDLTTDAVGRSRKLLTGWDMRTPFNFENDGLV 136

Query: 74  SDSDDVENMEFMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCMVTSNS-FCG 132
            D D VE+MEFM+L   DL RK   SN S+G  +GE+G ++++R+ +   MVTSN  F G
Sbjct: 137 LDRDAVESMEFMELDSPDLVRKLLPSNPSVGFLSGEIGRNSSKRIVSPTNMVTSNPIFGG 196

Query: 133 PESGSKISSSCMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVR 192
            ES S++SSS M+S SQDS++IDLKLGRL D  D +  +  KE SV SS   S+ AK+ R
Sbjct: 197 EESSSRLSSSFMESNSQDSSIIDLKLGRLADCIDAKNNRCSKEGSVLSSLASSMPAKRAR 256

Query: 193 TTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHL 252
           TTS CSQTPLCQV+GCN DLSSSKDYHKRHKVCDVHSKTPKVIVNG EQRFCQQCSRFHL
Sbjct: 257 TTSVCSQTPLCQVHGCNMDLSSSKDYHKRHKVCDVHSKTPKVIVNGIEQRFCQQCSRFHL 316

Query: 253 LAEFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYP 312
           LAEFDD KRSCR+RLAGHNERRRKPQ + HS + +KLLQ Y G+ +  TSL     FV+ 
Sbjct: 317 LAEFDDGKRSCRKRLAGHNERRRKPQLDTHSGKPQKLLQSYPGTRILGTSLAKRPPFVFQ 376

Query: 313 DMLPGGILFPERY---EPVKQIKFSERPPYSPQLAVPNTNEQLLTKSSLY-QGNKKQ--- 365
           D+LPG +  P+ Y    P + IK  + P YS QL +P  + QL  KS L+  G ++Q   
Sbjct: 377 DILPGSVYCPDGYGQANPSRSIKLEKEPIYSSQLVIP-ISGQLPPKSFLHLYGTERQCPP 435

Query: 366 ------HRLAIPLDTALTFQDSSGISHSSGALSLLSAQSQSMPNHLSGIPMARPLISQVS 419
                          A T Q+  G+S S+ ALSLLSAQSQ + NHL GIPMA P   Q  
Sbjct: 436 GFLSSGTEDCTGFYPASTVQELPGVSKSNCALSLLSAQSQDLSNHLMGIPMANPPTVQGC 495

Query: 420 HTHLNLGQNFVKTSGTTPLGKYETKGFYTSGMNSMDGAQMRSLMVPDAGHAFELKVETDE 479
           H H +   N  K  G + L K+ + G Y+S MNS++ AQM  +M+PD G+A   +V T+ 
Sbjct: 496 HAHYSAVHNSDKPIGMSSLEKFASNGSYSSRMNSVEVAQMGPVMLPDGGNAVSFEVRTNR 555

Query: 480 VSQESDFFKDKNCYSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQHTDDL 529
             Q SDF   K  +S E+  TVDL+QLSSHLKRVE QRN +  KQ  DD 
Sbjct: 556 NFQGSDFLNAKYSHSSEREPTVDLLQLSSHLKRVEWQRNYMHVKQENDDF 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541980|ref|XP_002512054.1| LIGULELESS1 protein, putative [Ricinus communis] gi|223549234|gb|EEF50723.1| LIGULELESS1 protein, putative [Ricinus communis]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 269/529 (50%), Positives = 332/529 (62%), Gaps = 51/529 (9%)

Query: 24  MESWIYG-SEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENM 82
           M+SW +  +EGK + +SDE+D S D F RSRKTL  W               D + VENM
Sbjct: 1   MDSWRFTTAEGKSLFFSDEIDVSTDSFGRSRKTLTGW---------------DGESVENM 45

Query: 83  EFMDLCFTDLTRKPCHSNSSLG----TPNGEVGSDTNE---RLTTTPCMVTSNSFCGPES 135
           EF+DL F+++ ++  +  S+ G      +GEV  D +     L++  CM+ SNS    ES
Sbjct: 46  EFIDLGFSEMHKRQFYGTSNTGFGILGSSGEVNFDASSNKIELSSPSCMIASNS--SLES 103

Query: 136 GSKISSSCMKSISQDSA-LIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTT 194
           GS  S+S M++ S DS+ LIDLKLGRL DG+D    K  KERSV SS  P+  AK+ RT 
Sbjct: 104 GSNHSNSVMEANSHDSSSLIDLKLGRLGDGKDVDNSKFLKERSVVSSVTPTFQAKRARTM 163

Query: 195 SSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLA 254
           +S +QTP CQVYGCNKDLSS KDYHKRHKVC+VHSKTPKVIVNG EQRFCQQCSRFHLL 
Sbjct: 164 NSRTQTPFCQVYGCNKDLSSLKDYHKRHKVCEVHSKTPKVIVNGVEQRFCQQCSRFHLLV 223

Query: 255 EFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDM 314
           EFDD KRSCR+RLAGHNERRRKPQF   S R  KLLQ YQG++   TSL    SF++P+M
Sbjct: 224 EFDDGKRSCRKRLAGHNERRRKPQFGALSGRPHKLLQAYQGTKFLGTSLPKRASFLFPNM 283

Query: 315 LPGGILFPERYEPV---KQIKFSERPPYSPQLAVPNTNEQLLTKSSLY-QGNKKQHRLAI 370
            PGGIL+PE YE     + +K  E+  Y        TN QLL KS L+  GN  Q+   I
Sbjct: 284 RPGGILYPEIYEQANCCRPVKLEEKSCY-------GTNSQLLQKSFLHLHGNGIQNTSGI 336

Query: 371 P---------LDTALTFQDSSGISHSSGALSLLSAQSQSMPNHLSGIPMARPLISQVSHT 421
                        +    + +G+SHSS ALSLLSA+SQ + +H +GI MARPLISQV  +
Sbjct: 337 SPPASEDFTVFSASSNIHELAGVSHSSCALSLLSAESQDL-SHSAGIIMARPLISQVGRS 395

Query: 422 HLNLGQNFVKTSGTTPLGKYETKGFYTSGMNSMDGAQMRSLMVPDAGHAFELKVETDEV- 480
           H  LG  F   S      KY    F +SGM+S+    M  LM   AGHA + ++E+DE  
Sbjct: 396 HHILG--FSDKSSLGSSEKYVGDIFQSSGMSSLKTNHMGPLMGSCAGHATDGQIESDEYL 453

Query: 481 -SQESDFFKDKNCYSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQHTDD 528
            +Q  DF  DK C S E G TVDL+QLSSHL RVEQQRNS+Q K   ++
Sbjct: 454 QNQGPDFVSDKFCISAENGTTVDLLQLSSHLHRVEQQRNSMQVKHELEE 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738116|emb|CBI27317.3| unnamed protein product [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/479 (53%), Positives = 316/479 (65%), Gaps = 15/479 (3%)

Query: 65  YNFDINKLFSDSDDVENMEFMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCM 124
           +NF+ + L  D D VE+MEFM+L   DL RK   SN S+G  +GE+G ++++R+ +   M
Sbjct: 15  FNFENDGLVLDRDAVESMEFMELDSPDLVRKLLPSNPSVGFLSGEIGRNSSKRIVSPTNM 74

Query: 125 VTSNS-FCGPESGSKISSSCMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAH 183
           VTSN  F G ES S++SSS M+S SQDS++IDLKLGRL D  D +  +  KE SV SS  
Sbjct: 75  VTSNPIFGGEESSSRLSSSFMESNSQDSSIIDLKLGRLADCIDAKNNRCSKEGSVLSSLA 134

Query: 184 PSLMAKKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRF 243
            S+ AK+ RTTS CSQTPLCQV+GCN DLSSSKDYHKRHKVCDVHSKTPKVIVNG EQRF
Sbjct: 135 SSMPAKRARTTSVCSQTPLCQVHGCNMDLSSSKDYHKRHKVCDVHSKTPKVIVNGIEQRF 194

Query: 244 CQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSL 303
           CQQCSRFHLLAEFDD KRSCR+RLAGHNERRRKPQ + HS + +KLLQ Y G+ +  TSL
Sbjct: 195 CQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQLDTHSGKPQKLLQSYPGTRILGTSL 254

Query: 304 QNGTSFVYPDMLPGGILFPERY---EPVKQIKFSERPPYSPQLAVPNTNEQLLTKSSLY- 359
                FV+ D+LPG +  P+ Y    P + IK  + P YS QL +P  + QL  KS L+ 
Sbjct: 255 AKRPPFVFQDILPGSVYCPDGYGQANPSRSIKLEKEPIYSSQLVIP-ISGQLPPKSFLHL 313

Query: 360 QGNKKQ---------HRLAIPLDTALTFQDSSGISHSSGALSLLSAQSQSMPNHLSGIPM 410
            G ++Q                  A T Q+  G+S S+ ALSLLSAQSQ + NHL GIPM
Sbjct: 314 YGTERQCPPGFLSSGTEDCTGFYPASTVQELPGVSKSNCALSLLSAQSQDLSNHLMGIPM 373

Query: 411 ARPLISQVSHTHLNLGQNFVKTSGTTPLGKYETKGFYTSGMNSMDGAQMRSLMVPDAGHA 470
           A P   Q  H H +   N  K  G + L K+ + G Y+S MNS++ AQM  +M+PD G+A
Sbjct: 374 ANPPTVQGCHAHYSAVHNSDKPIGMSSLEKFASNGSYSSRMNSVEVAQMGPVMLPDGGNA 433

Query: 471 FELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQHTDDL 529
              +V T+   Q SDF   K  +S E+  TVDL+QLSSHLKRVE QRN +  KQ  DD 
Sbjct: 434 VSFEVRTNRNFQGSDFLNAKYSHSSEREPTVDLLQLSSHLKRVEWQRNYMHVKQENDDF 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108868|ref|XP_002314996.1| hypothetical protein POPTRDRAFT_769914 [Populus trichocarpa] gi|222864036|gb|EEF01167.1| hypothetical protein POPTRDRAFT_769914 [Populus trichocarpa]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/526 (48%), Positives = 318/526 (60%), Gaps = 34/526 (6%)

Query: 20  YCFKMESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDV 79
           +   M+ W Y SEGKG+L+SDE+D S D FTRSRK  +                 D++  
Sbjct: 24  FVLLMDFWSYASEGKGLLFSDEIDLSGDAFTRSRKASIG---------------CDTEAA 68

Query: 80  ENMEFMDLCFTDLTRKPCH-SNSSLGTPNGE-VGSDTNERLTTTP-CMVTSNSFCGPESG 136
           E+ E +DL F+++ RKP H S +  G   G  VG D+++ +  +P CM+ SNS    ES 
Sbjct: 69  ESAESLDLGFSEIPRKPFHGSKTGAGMFGGSCVGIDSSKLVVGSPNCMIASNS--SMESR 126

Query: 137 SKISSSCMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSS 196
           S  S+S M+S SQDS+L DLKLGRL D  D Q  +  KER + SSA P+  AK+    S 
Sbjct: 127 SNHSNSLMESNSQDSSLFDLKLGRLADCIDAQNSRFSKERFLLSSASPTTQAKRAPMASL 186

Query: 197 CSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEF 256
             +   CQVY CNKDLSSSKDYHKRHKVC+VH+KTP+VIVNGNEQRFCQQCSRFHLL EF
Sbjct: 187 RPRISFCQVYDCNKDLSSSKDYHKRHKVCEVHTKTPQVIVNGNEQRFCQQCSRFHLLVEF 246

Query: 257 DDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLP 316
           DD KRSCR+RLAGHNERRRKPQF   S +  KLL  +Q ++   TSL   TSF++P+MLP
Sbjct: 247 DDGKRSCRKRLAGHNERRRKPQFGTLSVKPHKLLHPFQSTKFLGTSLAKRTSFLFPNMLP 306

Query: 317 GGILFPERYEP---VKQIKFSERPPYSPQLAVPNTNEQLLTKSSLY-QGNKKQHRLAI-P 371
           GG   P+ YE     K +K  E   YS   A+P  N QLL +S L+  GN+ Q    I P
Sbjct: 307 GGTFCPQSYEEDNWRKHVKLEENSIYSSPSAIPIRNGQLLPRSFLHLHGNRIQKTCGISP 366

Query: 372 LD--------TALTFQDSSGISHSSGALSLLSAQSQSMPNHLSGIPMARPLISQVSHTHL 423
           LD        TA T  + +G+SHSS ALSLLSA      +H +G  M RPL+SQ      
Sbjct: 367 LDTEDLTISNTATTINELAGVSHSSCALSLLSAAESQDLSHSAGNIMVRPLVSQAGGACQ 426

Query: 424 NLGQNFVKTSGTTPLGKYETKGFYTSGMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQE 483
            LG    K+ G     KY   G  + GMN ++   M    V  +GHA +LKVETD     
Sbjct: 427 TLGIA-NKSLGGGSSEKYVPIGINSFGMNFIEVDNMGPFGVSGSGHAADLKVETDGFLHH 485

Query: 484 SDFFKDKNCYSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQHTDDL 529
           SDF   K+C SP    TVD +QLSSHL+RVEQQRNS++ K   +D 
Sbjct: 486 SDFLNAKHCVSPANESTVDWLQLSSHLQRVEQQRNSMKVKHENEDF 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502645|ref|XP_003520128.1| PREDICTED: squamosa promoter-binding-like protein 6-like [Glycine max]

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 229/521 (43%), Positives = 298/521 (57%), Gaps = 61/521 (11%)

Query: 24  MESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENME 83
           MESW Y  E KG L+SDE+D S+D F RSRK L+ W++K ++  + +   SD + V +ME
Sbjct: 1   MESWSYVPEEKGYLFSDEMDFSLDAFMRSRKALVEWDNKSNF-VEKDGFNSDREVVRSME 59

Query: 84  FMDLCFTDLTRKPCHSNSSLGTPNGEVGSD-TNERLTTTPCMVTSNSFCGPE-SGSKISS 141
           F+DL F DL +K  H +  L T + E+ S+ +++R  ++P ++  +S  G E S SK  S
Sbjct: 60  FVDLGFPDLLQKSFHGSQPLETSSYELDSNNSSKRGNSSPHVIALDSSMGEEESDSKHLS 119

Query: 142 SCMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTP 201
           S ++S + DS+LIDLKLGRL D +     K+ KE    +S HP+ + K+ RT+S  +Q P
Sbjct: 120 SLVESKTHDSSLIDLKLGRLADCKGASSDKVAKEGFTLTSIHPTTLWKRARTSSLPAQAP 179

Query: 202 LCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKR 261
           +CQVYGCN DLSSSKDYHKRHKVCD HSKT KVIVNG EQRFCQQCSRFHLLAEFDD KR
Sbjct: 180 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKR 239

Query: 262 SCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILF 321
           SCRRRLAGHNERRRKPQF+  + +  K+LQ YQG++   +SLQN   F + D+    ILF
Sbjct: 240 SCRRRLAGHNERRRKPQFDYVTGKQHKILQSYQGTKYLGSSLQNKPQFPFQDIFQSSILF 299

Query: 322 PERYEPVKQ---IKFSERPPYSPQLAVPNTNEQLLTKSSLYQGNKKQHRLAIPLDTALTF 378
           P ++    Q   +K  E   Y  QLA P T +Q                           
Sbjct: 300 PGKHAQFSQSGRVKLEEDSIYGSQLAAPVTLDQ--------------------------- 332

Query: 379 QDSSGISHSSGALSLLSAQSQSMPNHLSGIPMARPLI----------SQVSHTHLNLGQN 428
                   SS ALSLLS QSQ    H +G P+A P +          S+VS   L +   
Sbjct: 333 ------ESSSCALSLLSDQSQYPSCHAAGNPLASPQVFSGIRIPDRDSRVSKKPLRI--- 383

Query: 429 FVKTSGTTPLGKYETKGFYTSGMNSMDGAQMRSLMV-PDAGHAFELKVETDEVSQESDFF 487
                  +P  K      +     S +  + RS       GHA E+    D++ Q S+ F
Sbjct: 384 -------SPADKLAPNESFPCDTISKEVIKNRSAATFSSVGHALEVH-NGDDICQPSELF 435

Query: 488 KDKNCYSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQHTDD 528
             K+  S E   TVDL QLSSHL+RVEQQRNS+  K   +D
Sbjct: 436 SIKHSLSSEHAATVDLFQLSSHLQRVEQQRNSVLVKWENED 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498035|ref|XP_003517860.1| PREDICTED: squamosa promoter-binding-like protein 6-like [Glycine max]

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 217/516 (42%), Positives = 294/516 (56%), Gaps = 51/516 (9%)

Query: 24  MESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENME 83
           MESW Y  E KG L+SDE++ S+D F RSRK L+ W++K ++  + +   SD + V++ME
Sbjct: 1   MESWSYVPEEKGYLFSDEMEFSLDAFMRSRKALVEWDNKSNF-VERDGFNSDREVVKSME 59

Query: 84  FMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERL--TTTPCMVTSNSFCGPESGSKISS 141
           F+DL F DL +K  H +  L T + E+ S+ + +   ++T  +   +S    ES SK  S
Sbjct: 60  FVDLGFPDLLQKSFHGSLPLETSSYELDSNNSSKRGNSSTHVIALDSSMGEEESNSKHLS 119

Query: 142 SCMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTP 201
           S ++S +QDS+LIDLKLGRL D +     K+ KE    +S HP+ ++K+ RT+S  +Q P
Sbjct: 120 SLVESKTQDSSLIDLKLGRLADCKGASSDKVEKEGFTLTSIHPTTLSKRARTSSLPAQAP 179

Query: 202 LCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKR 261
           +CQVYGCN DLSSSKDYHKRHKVCD HSKT KVIVNG EQRFCQQCSRFHLL EFDD KR
Sbjct: 180 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKR 239

Query: 262 SCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILF 321
           SCRRRLAGHNERRRKPQF+  + +  K+LQ YQG++   +SLQN   F + D+    ILF
Sbjct: 240 SCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGSSLQNKPMFPFQDIFQSSILF 299

Query: 322 PERYEPVKQ---IKFSERPPYSPQLAVPNTNEQLLTKSSLYQGNKK-----QHRLAIPLD 373
           P ++  + Q   +K  E   YS QL  P T +Q  +  +L   + +      H    PL 
Sbjct: 300 PGKHAQISQSGRVKLEEDSIYSSQLTAPITLDQESSSCALSLLSDQSQYLSHHAACNPLT 359

Query: 374 TALTFQDSSGISHSSGALSLLSAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQNFVKTS 433
           +   F   SGI                +PN             Q+S T L +        
Sbjct: 360 SHRVF---SGIC---------------IPNR----------DGQISETPLRI-------- 383

Query: 434 GTTPLGKYETKGFYTSGMNSMDGAQMRSLMV-PDAGHAFELKVETDEVSQESDFFKDKNC 492
             +   K+     +     S +  + RS     + GHA  +    D++ Q S+    K+ 
Sbjct: 384 --SSADKHAPNESFPCNTTSKEVIKNRSAATFSNTGHALRVH-HGDDICQPSELLDVKHH 440

Query: 493 YSPEQGFTVDLIQLSSHLKRVEQQRNSIQPKQHTDD 528
           +S E   TVDL QLSSHL+RVEQQRNS+  K   +D
Sbjct: 441 FSSEHAATVDLFQLSSHLQRVEQQRNSVLVKWENED 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456548|ref|XP_002265203.1| PREDICTED: squamosa promoter-binding-like protein 6-like [Vitis vinifera]

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 245/558 (43%), Positives = 299/558 (53%), Gaps = 62/558 (11%)

Query: 24  MESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENME 83
           M SW Y S+ K  + SD  D   +   RS+   M WE K    +  + L S    ++N  
Sbjct: 1   MGSWSYVSQEKEFV-SDATDLQPNSSARSKNVFMGWELKTPCGYGNSILVSSQQVIQNQG 59

Query: 84  FMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCMVTSNSFC-GPESGSKISSS 142
           F +    ++ RK    NS      G+ G    + +     MV+ N F    ES SK+SSS
Sbjct: 60  FGEFGIPEMVRKQLPDNSIRDVSCGKGG----DGIMVNSIMVSPNVFPRDDESSSKLSSS 115

Query: 143 CMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTPL 202
            M+S SQDS LIDLKLGR  D  D Q  K  K      SA  S  AK+VR     SQT  
Sbjct: 116 VMESNSQDSLLIDLKLGRFADHSDSQNCKPSKANPSLPSAESSTPAKRVRAVGLNSQTAF 175

Query: 203 CQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRS 262
           CQV+GCNKDLSSSKDYHKRHKVC+VHSKT KVIVNG EQRFCQQCSRFHLLAEFDD KRS
Sbjct: 176 CQVHGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRS 235

Query: 263 CRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQ---GSELPWTSLQNGTSFVYPDMLPGGI 319
           CR+RLAGHNERRRKPQ  IH  R+ +LLQ Y    G+    T+L    SF+  D+LP G+
Sbjct: 236 CRKRLAGHNERRRKPQVGIHPGRAGRLLQSYNGYAGNRFQGTTLTT-ASFICQDILPSGL 294

Query: 320 LFPERY---EPVKQIKFSERPPYSPQLAVPNTNEQLLTKS-----------SLYQGNKK- 364
           L PE+Y   +  K+IK  +   YSPQ  +P TN     KS           S +Q N   
Sbjct: 295 LPPEKYGMSDWCKRIKVEDGTDYSPQSTIPITNGHPHPKSLFPTFEFEKQYSSFQDNGAN 354

Query: 365 ------QHRLAIPLDTALT-------FQDS-------------------SGISHSSGALS 392
                 +H    P D A         FQD+                   SGIS S  ALS
Sbjct: 355 TGSIFSEHNSRYPHDLADANSGPHSFFQDTSLGNEDLSVFDAGSTVQALSGISDSGRALS 414

Query: 393 LLSAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQNFVKTSGTTP---LGKYETKGFYTS 449
           LLS+QSQ+  +H SGIPM  PLI    H H N+ Q   K  G +P   + +   K F +S
Sbjct: 415 LLSSQSQNSSSHSSGIPMIHPLIMPGCHAHYNIAQVSEKFLGVSPQVSMSRVPNK-FLSS 473

Query: 450 GMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLSSH 509
           GMNS +G  +  +++ D       +V TD + Q SDF   K+C   E G T+DL+QLSS 
Sbjct: 474 GMNSAEGNHLGPILISDCSEPVNFEV-TDGIFQGSDFVNTKDCLPCETGPTIDLLQLSSQ 532

Query: 510 LKRVEQQRNSIQPKQHTD 527
           L RVE QR SI  KQ  D
Sbjct: 533 LHRVEHQRQSIHVKQEND 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441121|ref|XP_004138332.1| PREDICTED: uncharacterized protein LOC101221286 [Cucumis sativus]

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 222/556 (39%), Positives = 306/556 (55%), Gaps = 66/556 (11%)

Query: 24  MESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENME 83
           MESW Y SEGKG + SDE++S      R++ +L+ WE K   +F  + +   S  V+N  
Sbjct: 1   MESWSYVSEGKGCM-SDEMNSPTSSLARNKDSLLGWEFKNPCSFG-STMLPTSQQVDNQG 58

Query: 84  FMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCMVTSNSFCGP-ESGSKISSS 142
           F +L F ++  K    NS     + +V      R    P M +S +F G  ES SK+SSS
Sbjct: 59  FGELVFPEMIGKQLPDNSVCDILSSKV---VGGRFLN-PAMNSSIAFLGEDESTSKLSSS 114

Query: 143 CMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTPL 202
            + S S+DS+ IDLKLGR  D RD    K FK   + SS+  S+ +K+VR +   SQT  
Sbjct: 115 IVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGAPILSSSESSMPSKRVRASGLNSQTYF 174

Query: 203 CQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRS 262
           CQVYGCNKDLSS KDYHKRHKVC+VHSKT KVIVNG EQRFCQQCSRFHLLAEFDD KRS
Sbjct: 175 CQVYGCNKDLSSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRS 234

Query: 263 CRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILFP 322
           CR+RLAGHNERRRKPQ  I+S R+ + LQ Y GS L  T+L   TSF+  ++LP G+L P
Sbjct: 235 CRKRLAGHNERRRKPQVAINSGRTGRFLQSYNGSRLQGTAL-TATSFICQEILPNGLLHP 293

Query: 323 ERY---EPVKQIKFSERPPYSPQLAVPNTNEQLLTKS----------------------- 356
           E+Y   +  + +K  ++  Y P  AV   +  L +KS                       
Sbjct: 294 EKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPPFHDNGPNASA 353

Query: 357 -SLYQGNKKQHRLAI---------------------PLDTALTFQDSSGISHSSGALSLL 394
            ++++ N  Q+ L++                      + +A +    SG+S S  ALSLL
Sbjct: 354 TNIFKENSNQYPLSVGGVNSNSRSYFHNPSLGSEYFSVYSAASTDRLSGLSDSGCALSLL 413

Query: 395 SAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQ--NFVKTSGTTPLGKYETKGFYTSGMN 452
           S+Q+Q+   H SGIP+ RPL+      H ++ Q    +    +       +  F +SG+N
Sbjct: 414 SSQTQNSSTHSSGIPIGRPLVLLDGQNHYSMSQLSEKLMGVSSQVSVSGVSNKFNSSGLN 473

Query: 453 SMDGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSP-EQGFTVDLIQLSSHLK 511
           + +G  +  +  P+   A   ++        +  F   N   P E G T+DL+QLSS L+
Sbjct: 474 TSEGCTLGPISTPETSDAVNFEI-------SNRIFHGSNLADPGEGGPTIDLLQLSSQLQ 526

Query: 512 RVEQQRNSIQPKQHTD 527
           RVE QR ++Q KQ ++
Sbjct: 527 RVEHQRQAMQVKQESN 542

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522424|ref|XP_004168226.1| PREDICTED: squamosa promoter-binding-like protein 6-like [Cucumis sativus]

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 219/548 (39%), Positives = 287/548 (52%), Gaps = 108/548 (19%)

Query: 24  MESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNFDINKLFSDSDDVENME 83
           MESW Y SEGKG + SDE++S      R++ +L+ WE K   +F  + +   S  V+N  
Sbjct: 1   MESWSYVSEGKGCM-SDEMNSPTSSLARNKDSLLGWEFKNPCSFG-STMLPTSQQVDNQG 58

Query: 84  FMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCMVTSNSFCGP-ESGSKISSS 142
           F +L F ++  K    NS     + +V      R    P M +S +F G  ES SK+SSS
Sbjct: 59  FGELVFPEMIGKQLPDNSVCDILSSKV---VGGRFLN-PAMNSSIAFLGEDESTSKLSSS 114

Query: 143 CMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTPL 202
            + S S+DS+ IDLKLGR  D RD    K FK   + SS+  S+ +K+VR +   SQT  
Sbjct: 115 IVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGAPILSSSESSMPSKRVRASGLNSQTYF 174

Query: 203 CQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRS 262
           CQVYGCNKDLSS KDYHKRHKVC+VHSKT KVIVNG EQRFCQQCSRFHLLAEFDD KRS
Sbjct: 175 CQVYGCNKDLSSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRS 234

Query: 263 CRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYPDMLPGGILFP 322
           CR+RLAGHNERRRKPQ  I+S R+ + LQ Y GS L  T+L   TSF+  ++LP G+L P
Sbjct: 235 CRKRLAGHNERRRKPQVAINSGRTGRFLQSYNGSRLQGTAL-TATSFICQEILPNGLLHP 293

Query: 323 ERY---EPVKQIKFSERPPYSPQLAVPNTNEQLLTKS----------------------- 356
           E+Y   +  + +K  ++  Y P  AV   +  L +KS                       
Sbjct: 294 EKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPPFHDNGPNASA 353

Query: 357 -SLYQGNKKQHRLAI---------------------PLDTALTFQDSSGISHSSGALSLL 394
            ++++ N  Q+ L++                      + +A +    SG+S S  ALSLL
Sbjct: 354 TNIFKENSNQYPLSVGGVNSNSRSYFHNPSLGSEYFSVYSAASTDRLSGLSDSGCALSLL 413

Query: 395 SAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQNFVKTSGTTPLGKYETKGFYTSGMNSM 454
           S+Q+Q+   H SGIP+ RPL+       L  GQN    S                     
Sbjct: 414 SSQTQNSSTHSSGIPIGRPLV-------LLDGQNHYSMS--------------------- 445

Query: 455 DGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSP-EQGFTVDLIQLSSHLKRV 513
                                +  E S E   F   N   P E G T+DL+QLSS L+RV
Sbjct: 446 ---------------------QLSESSWE--IFHGSNLADPGEGGPTIDLLQLSSQLQRV 482

Query: 514 EQQRNSIQ 521
           E QR ++Q
Sbjct: 483 EHQRQAMQ 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547135|ref|XP_002514625.1| LIGULELESS1 protein, putative [Ricinus communis] gi|223546229|gb|EEF47731.1| LIGULELESS1 protein, putative [Ricinus communis]

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 228/560 (40%), Positives = 306/560 (54%), Gaps = 67/560 (11%)

Query: 24  MESWIYGSEGKGILYSDEVDSSVDPFTRSRKTLMAWESKPSYNF-DINKLFSDSDDVENM 82
           M+SW Y S GKG + S+E  SS D   +S+  LM W+ K +  F + N + +    +EN 
Sbjct: 1   MQSWNYVSGGKGFV-SNETASSSDSIAKSKNVLMGWDLKTACGFGNNNVVVAGQQAIENH 59

Query: 83  EFMDLCFTDLTRKPCHSNSSLGTPNGEVGSDTNERLTTTPCMVTSNSF-CGPESGSKISS 141
            F +L + +L  K    NS        + S+ +   +    MV  N F    ES S++S 
Sbjct: 60  CFGELNYQELMGKQLPDNS----IRNALSSEADGGKSINHFMVNMNVFSLEHESTSRLSR 115

Query: 142 SCMKSISQDSALIDLKLGRLVDGRDKQCGKLFKERSVASSAHPSLMAKKVRTTSSCSQTP 201
           + ++S S+DS+ IDLKLGR  D  +    ++ K  SV SS+  S   K++R   + S   
Sbjct: 116 TVVESNSRDSSFIDLKLGRFGDPTEGHNSRISKGASVMSSSESSTPPKRLRVGVN-SHPA 174

Query: 202 LCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKR 261
            CQVYGCNKDLSSSK+YHKRHKVC+VHSKT KVIVNG EQRFCQQCSRFHLLAEFDD KR
Sbjct: 175 HCQVYGCNKDLSSSKEYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKR 234

Query: 262 SCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQG---SELPWTSLQNGTSFVYPDMLPGG 318
           SCR+RLAGHNERRRKPQ   HS R+ KLLQ Y G   S    T+L   TSF+  D+LPGG
Sbjct: 235 SCRKRLAGHNERRRKPQVGPHSGRTGKLLQSYNGIDTSRFHGTAL---TSFICQDILPGG 291

Query: 319 ILFPERY----------------EPVKQIKFSERPPYSPQLAVPNTNEQLL--------- 353
            + P+RY                 P+  I  S   P+S  L   N  +++          
Sbjct: 292 PMHPKRYGTDNWCRQIKVEDGYFNPLSSIPVSSGHPHSKSLFPSNNLDKVFLACHGNEAT 351

Query: 354 --TKSSLYQG-NKKQHRLAI--------------------PLDTALTFQDSSGISHSSGA 390
             T S+L +  N+  H L                        D A   Q  SGI++S  A
Sbjct: 352 TATGSTLSESTNRYPHDLGGSISSSQSLIQDASLGQADFSAFDAASNVQGVSGITNSGSA 411

Query: 391 LSLLSAQSQSMPNHLSGIPMARPLISQVSHTHLNLGQ---NFVKTSGTTPLGKYETKGFY 447
           LSLLS+QS ++ +H SGI MA PL+     +H ++ Q     V  S     G  + K F 
Sbjct: 412 LSLLSSQSHNLSSHSSGISMACPLVLPGRSSHYSVSQVSEKLVGISSQASAGAMQNK-FS 470

Query: 448 TSGMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLS 507
           +SG +S +G+++ S+++ D   A    V  D + Q S+F   K+C S E G T+DL+QLS
Sbjct: 471 SSGTSSAEGSRLGSILLSDGSDAINF-VIADGMYQGSNFMNAKDCLSCEDGTTIDLLQLS 529

Query: 508 SHLKRVEQQRNSIQPKQHTD 527
           S L+RVE+Q+ S+Q KQ  D
Sbjct: 530 SQLERVERQKQSMQVKQEND 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.313	0.409	0.539	3e-55
TAIR|locus:2159717	359	SPL13A "SQUAMOSA PROMOTER-BIND	0.291	0.428	0.488	2e-33
TAIR|locus:2832472	359	SPL13B "SQUAMOSA PROMOTER-BIND	0.291	0.428	0.488	2e-33
TAIR|locus:2016014	396	SPL10 "squamosa promoter bindi	0.228	0.305	0.527	1.1e-32
TAIR|locus:2169248	419	SPL2 "squamosa promoter bindin	0.181	0.229	0.626	6.9e-31
TAIR|locus:2015999	393	SPL11 "squamosa promoter-like	0.275	0.371	0.453	3.5e-30
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.187	0.264	0.643	1.4e-29
TAIR|locus:2095793	354	SPL15 "squamosa promoter bindi	0.206	0.307	0.577	3.5e-28
TAIR|locus:2057656	131	SPL3 "squamosa promoter bindin	0.166	0.671	0.613	3.8e-27
TAIR|locus:2037355	1035	SPL14 "squamosa promoter bindi	0.166	0.085	0.681	8.7e-27

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
 Identities = 95/176 (53%), Positives = 116/176 (65%)

Query:   180 SSAHPSLMAKKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGN 239
             SS   +L +KK R ++ CSQ PLCQVYGC+KDLSSSKDYHKRH+VC+ HSKT  VIVNG 
Sbjct:   101 SSRGFALPSKKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGL 160

Query:   240 EQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELP 299
             EQRFCQQCSRFH L+EFDD KRSCRRRLAGHNERRRKP F     +  KLL+  Q  ++ 
Sbjct:   161 EQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPAFYFLPGKRHKLLRTSQ--DVV 218

Query:   300 WTSLQNGTSFVYPDMLPGGILF----PERYEPVKQIKFSERPPYSPQLAVPNTNEQ 351
                    +S V P+  PG +L+     + +   + + F + P  S     P TNEQ
Sbjct:   219 GNKFLENSSLVLPESFPGSLLYRVIDEDDHRTSRLVSFKDEPTCS---MFP-TNEQ 270

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 82/168 (48%), Positives = 104/168 (61%)

Query:   155 DLKLGRLVD------GRDKQCGKL--FKERSVAS-SAHPSLMAKKVRTTS-SCSQTPLCQ 204
             DLKLGR +       G  +Q   L  +K+ ++A      S  +K+ R      +Q P+C 
Sbjct:    43 DLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICL 102

Query:   205 VYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCR 264
             V GC+ D S+ ++YHKRHKVCDVHSKTP V +NG++QRFCQQCSRFH L EFD+ KRSCR
Sbjct:   103 VDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCR 162

Query:   265 RRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYP 312
             +RL GHN RRRKPQ   H  R       +QGS+L   S   G S V+P
Sbjct:   163 KRLDGHNRRRRKPQPE-HIGRPANFFTGFQGSKLLEFS---GGSHVFP 206

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 82/168 (48%), Positives = 104/168 (61%)

Query:   155 DLKLGRLVD------GRDKQCGKL--FKERSVAS-SAHPSLMAKKVRTTS-SCSQTPLCQ 204
             DLKLGR +       G  +Q   L  +K+ ++A      S  +K+ R      +Q P+C 
Sbjct:    43 DLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICL 102

Query:   205 VYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCR 264
             V GC+ D S+ ++YHKRHKVCDVHSKTP V +NG++QRFCQQCSRFH L EFD+ KRSCR
Sbjct:   103 VDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCR 162

Query:   265 RRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPWTSLQNGTSFVYP 312
             +RL GHN RRRKPQ   H  R       +QGS+L   S   G S V+P
Sbjct:   163 KRLDGHNRRRRKPQPE-HIGRPANFFTGFQGSKLLEFS---GGSHVFP 206

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 67/127 (52%), Positives = 89/127 (70%)

Query:   184 PSLMAKKVRTTSSCSQT---PLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNE 240
             PS++A+K   T SC Q+   P CQ+ GC  DLSSSKDYH++H+VC+ HSK PKV+V+G E
Sbjct:   156 PSVVARK--KTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLE 213

Query:   241 QRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQGSELPW 300
             +RFCQQCSRFH ++EFD+ KRSCR+RL+ HN RRRKPQ  +    S ++    Q + + W
Sbjct:   214 RRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ-GVFPLNSERVFDRRQHTSMLW 272

Query:   301 TSLQNGT 307
               L   T
Sbjct:   273 NGLSLNT 279

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010358 "leaf shaping" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2169248 SPL2 "squamosa promoter binding protein-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 62/99 (62%), Positives = 77/99 (77%)

Query:   179 ASSAHPSLMAKKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNG 238
             +SS  P    KK ++     QTP CQV GCN DLSS+KDYH++H++C+ HSK PKV+V+G
Sbjct:   148 SSSVSP---VKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSG 204

Query:   239 NEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKP 277
              E+RFCQQCSRFH L+EFD+ KRSCRRRL+ HN RRRKP
Sbjct:   205 VERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKP 243

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2015999 SPL11 "squamosa promoter-like 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.5e-30, P = 3.5e-30
 Identities = 68/150 (45%), Positives = 93/150 (62%)

Query:   156 LKLGRLVDGRDKQCGKLFKERSVASSA--HPSLMAKKVRTTSSCSQTPLCQVYGCNKDLS 213
             LKLG+     ++  G+   E S  S     PS++A K +        P CQ+ GC  DLS
Sbjct:   127 LKLGKRTYS-EEYWGRNNNEISAVSMKLLTPSVVAGKSKLCGQSMPVPRCQIDGCELDLS 185

Query:   214 SSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNER 273
             S+K YH++HKVC+ HSK PKV V+G E+RFCQQCSRFH ++EFD+ KRSCR+RL+ HN R
Sbjct:   186 SAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNAR 245

Query:   274 RRKPQFNIHSDRSRKLLQLYQGSELPWTSL 303
             RRKPQ  + S    ++    Q + + W  +
Sbjct:   246 RRKPQ-GVFSMNPERVYDRRQHTNMLWNGV 274

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 65/101 (64%), Positives = 73/101 (72%)

Query:   180 SSAHPSLMAKKVRTTSS--CSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVN 237
             SS+      ++VR   S    Q P CQV GC  DL+++K Y+ RH+VC VHSKTPKV V 
Sbjct:    49 SSSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVA 108

Query:   238 GNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQ 278
             G EQRFCQQCSRFH L EFD  KRSCRRRLAGHNERRRKPQ
Sbjct:   109 GIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKPQ 149

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2095793 SPL15 "squamosa promoter binding protein-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 3.5e-28, P = 3.5e-28
 Identities = 63/109 (57%), Positives = 72/109 (66%)

Query:   170 GKLFKERSVASSAHPSLMAKKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHS 229
             G  F ++        S    +V T    S T  CQV GC  DLS+ K Y+ RHKVC +HS
Sbjct:    26 GLRFGQKIYFEDGSGSRSKNRVNTVRKSSTTARCQVEGCRMDLSNVKAYYSRHKVCCIHS 85

Query:   230 KTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQ 278
             K+ KVIV+G  QRFCQQCSRFH L+EFD  KRSCRRRLA HNERRRKPQ
Sbjct:    86 KSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKRSCRRRLACHNERRRKPQ 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0008361 "regulation of cell size" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 3.8e-27, P = 3.8e-27
 Identities = 54/88 (61%), Positives = 67/88 (76%)

Query:   189 KKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCS 248
             +K +   + S + +CQV  C  D+S +K YHKRHKVC  H+K P V ++G  QRFCQQCS
Sbjct:    40 EKKQKGKATSSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCS 99

Query:   249 RFHLLAEFDDSKRSCRRRLAGHNERRRK 276
             RFH L+EFD++KRSCRRRLAGHNERRRK
Sbjct:   100 RFHALSEFDEAKRSCRRRLAGHNERRRK 127

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 8.7e-27, Sum P(2) = 8.7e-27
 Identities = 60/88 (68%), Positives = 69/88 (78%)

Query:   189 KKVRTTSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCS 248
             KKVR+ S     P+CQV  C +DLS +KDYH+RHKVC+VHSK  K +V    QRFCQQCS
Sbjct:   106 KKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCS 165

Query:   249 RFHLLAEFDDSKRSCRRRLAGHNERRRK 276
             RFHLL+EFD+ KRSCRRRLAGHN RRRK
Sbjct:   166 RFHLLSEFDEGKRSCRRRLAGHNRRRRK 193

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_X001404 hypothetical protein (600 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	529
pfam03110	79	pfam03110, SBP, SBP domain	4e-50

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  165 bits (421), Expect = 4e-50
 Identities = 61/77 (79%), Positives = 69/77 (89%)

Query: 202 LCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKR 261
            CQV GC  DLS++KDYH+RHKVC+VHSK P V+V+G EQRFCQQCSRFHLL+EFD+ KR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 262 SCRRRLAGHNERRRKPQ 278
           SCRRRLAGHNERRRKPQ
Sbjct: 61  SCRRRLAGHNERRRKPQ 77

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	529
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=1.1e-37  Score=260.55  Aligned_cols=78  Identities=64%  Similarity=1.145  Sum_probs=63.2

Q ss_pred             ceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhHhhhhcCCCC
Q 009653          202 LCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQF  279 (529)
Q Consensus       202 ~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFDg~kRSCR~rL~rHn~RRRk~q~  279 (529)
                      +||||||++||+.+|+||+||||||.|++||+|+++|.++||||||+|||+|+||||+|||||++|++||+||||+++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999875

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	529
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		4e-25
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		2e-18
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		9e-17

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 63/83 (75%)
Query: 194 TSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLL 253
           +S  S   LCQV  C  D+  +K YH+RHKVC+VH+K   V ++G  QRFCQQCSRFH L
Sbjct: 2   SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDL 61
Query: 254 AEFDDSKRSCRRRLAGHNERRRK 276
            EFD++KRSCRRRLAGHNERRRK
Sbjct: 62  QEFDEAKRSCRRRLAGHNERRRK 84

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 203 CQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRS 262
           CQV  C  D+S  K YHKRH+VC   +    V+++G  +R+CQQC +FHLL +FD+ KRS
Sbjct: 6   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 65
Query: 263 CRRRLAGHNERR-RKP 277
           CRR+L  HN RR RKP
Sbjct: 66  CRRKLERHNNRRKRKP 81

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 41/55 (74%)
Query: 203 CQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 257
           CQV  C  DLS  KDYH+RHKVC++HSK    +V G  QRFCQQCSRFH+L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	529
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	8e-38
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	1e-36
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	3e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  133 bits (335), Expect = 8e-38
 Identities = 53/85 (62%), Positives = 63/85 (74%)

Query: 194 TSSCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLL 253
           +S  S   LCQV  C  D+  +K YH+RHKVC+VH+K   V ++G  QRFCQQCSRFH L
Sbjct: 2   SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDL 61

Query: 254 AEFDDSKRSCRRRLAGHNERRRKPQ 278
            EFD++KRSCRRRLAGHNERRRK  
Sbjct: 62  QEFDEAKRSCRRRLAGHNERRRKSS 86

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score =  129 bits (326), Expect = 1e-36
 Identities = 38/80 (47%), Positives = 52/80 (65%)

Query: 199 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDD 258
               CQV  C  D+S  K YHKRH+VC   +    V+++G  +R+CQQC +FHLL +FD+
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61

Query: 259 SKRSCRRRLAGHNERRRKPQ 278
            KRSCRR+L  HN RR++  
Sbjct: 62  GKRSCRRKLERHNNRRKRKP 81

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score =  111 bits (280), Expect = 3e-30
 Identities = 36/58 (62%), Positives = 41/58 (70%)

Query: 200 TPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 257
              CQV  C  DLS  KDYH+RHKVC++HSK    +V G  QRFCQQCSRFH+L EFD
Sbjct: 3   AICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 89/641 (13%), Positives = 184/641 (28%), Gaps = 215/641 (33%)

Query: 9   HFHIAY-FGQLRYCFK------MESWIYGSEGK-------GILYSDEVDSSV---DPFTR 51
           H H+ +  G+ +Y +K       ++++   + K        IL  +E+D  +   D  + 
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 52  SRKTLMAWESKPSYNFDINKLFSDSDDVENMEFMDLCFTDLTRKPCHSNSSLGTPNGEVG 111
           + +      SK     ++ + F +     N +F+        R+P        +    + 
Sbjct: 64  TLRLFWTLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQP--------SMMTRMY 112

Query: 112 SDTNERLTTTPCMVTSNSFCGPESGSKISSSCMKSISQDSALIDLKLGR--LVDGRDKQC 169
            +  +RL     +    +    +   K+            AL++L+  +  L+DG     
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLR----------QALLELRPAKNVLIDG-VLGS 161

Query: 170 GKLFKERSV-ASSAHPSLMAKKVRT---------TSSCSQTP---------LCQVYGCN- 209
           GK     +  A       ++ KV+                +P         L      N 
Sbjct: 162 GK-----TWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 210 -----------KDLSSSKDY------HKRHKVC-----DVHSKTPKVIVNGNEQRFCQQC 247
                        + S +         K ++ C     +V  +  K         F   C
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAW-----NAFNLSC 266

Query: 248 -----SRFHLLAEFDDSKRSCRRRLAGHNERRRKPQFNIHSDRSRKLLQLYQG---SELP 299
                +RF  + +F  +  +    L  H+         +  D  + LL  Y      +LP
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSM-------TLTPDEVKSLLLKYLDCRPQDLP 319

Query: 300 WTSLQNGTSFV---YPDMLPGGILFPERYEPVKQIKFSE--------------RPPYSPQ 342
              +            + +  G+   + ++ V   K +               R  +  +
Sbjct: 320 -REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-R 377

Query: 343 LAV--PNTN--EQLLT-------------------KSSLYQGNKKQHRLAIP---LDTAL 376
           L+V  P+ +    LL+                   K SL +   K+  ++IP   L+  +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 377 TFQDSSGISHSS-----GALSLLSAQSQSMPN-----------HLSGIPMARPLISQVSH 420
             ++   + H S            +     P            HL  I      ++    
Sbjct: 438 KLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRM 495

Query: 421 THLNLG--QNFVKTSGTTP------------LGKYETKGFYTSGMNSMDGAQMRSLMVPD 466
             L+    +  ++   T              L  Y  K +        D       +V  
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY--KPYIC------DNDPKYERLVNA 547

Query: 467 AGHAFELKVETDEVSQESDFFKDKNCYSPEQGFTVDLIQLS 507
               F  K+E              N    +  +T DL++++
Sbjct: 548 ILD-FLPKIEE-------------NLICSK--YT-DLLRIA 571

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	529
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.96

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=6.7e-41  Score=286.29  Aligned_cols=88  Identities=59%  Similarity=1.006  Sum_probs=80.4

Q ss_pred             CCCCCCceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhHhhhhc
Q 009653          196 SCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRR  275 (529)
Q Consensus       196 ~~~~~~~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFDg~kRSCR~rL~rHn~RRR  275 (529)
                      .+++.++|||+||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+|||
T Consensus         4 ~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRR   83 (94)
T 1ul4_A            4 GSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRR   83 (94)
T ss_dssp             ----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCC
T ss_pred             CCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q 009653          276 KPQFNIHS  283 (529)
Q Consensus       276 k~q~~~~~  283 (529)
                      |+++++..
T Consensus        84 k~~~~~~~   91 (94)
T 1ul4_A           84 KSSGESGP   91 (94)
T ss_dssp             SCCCC---
T ss_pred             cCCCCcCC
Confidence            99998753

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=8.5e-40  Score=276.70  Aligned_cols=83  Identities=46%  Similarity=0.943  Sum_probs=79.0

Q ss_pred             CCCceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhHhhhhcCCC
Q 009653          199 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQ  278 (529)
Q Consensus       199 ~~~~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFDg~kRSCR~rL~rHn~RRRk~q  278 (529)
                      +.++|||+||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++
T Consensus         2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~   81 (88)
T 1ul5_A            2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP   81 (88)
T ss_dssp             -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred             CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CCC
Q 009653          279 FNI  281 (529)
Q Consensus       279 ~~~  281 (529)
                      .+.
T Consensus        82 ~~~   84 (88)
T 1ul5_A           82 VDK   84 (88)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            664

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.96  E-value=1e-30  Score=207.84  Aligned_cols=59  Identities=61%  Similarity=1.111  Sum_probs=57.2

Q ss_pred             CCCceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccc
Q 009653          199 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD  257 (529)
Q Consensus       199 ~~~~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFD  257 (529)
                      +.++|||+||++||+.+|+|||||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            46899999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	529
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	2e-42
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	8e-42
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	7e-29

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  144 bits (364), Expect = 2e-42
 Identities = 38/78 (48%), Positives = 52/78 (66%)

Query: 201 PLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSK 260
             CQV  C  D+S  K YHKRH+VC   +    V+++G  +R+CQQC +FHLL +FD+ K
Sbjct: 2   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 61

Query: 261 RSCRRRLAGHNERRRKPQ 278
           RSCRR+L  HN RR++  
Sbjct: 62  RSCRRKLERHNNRRKRKP 79

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  142 bits (359), Expect = 8e-42
 Identities = 51/78 (65%), Positives = 60/78 (76%)

Query: 201 PLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSK 260
            LCQV  C  D+  +K YH+RHKVC+VH+K   V ++G  QRFCQQCSRFH L EFD++K
Sbjct: 2   RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAK 61

Query: 261 RSCRRRLAGHNERRRKPQ 278
           RSCRRRLAGHNERRRK  
Sbjct: 62  RSCRRRLAGHNERRRKSS 79

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  106 bits (266), Expect = 7e-29
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 203 CQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 257
           CQV  C  DLS  KDYH+RHKVC++HSK    +V G  QRFCQQCSRFH+L EFD
Sbjct: 4   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	529
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.96

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.3e-40  Score=277.03  Aligned_cols=84  Identities=45%  Similarity=0.927  Sum_probs=81.4

Q ss_pred             CCceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhHhhhhcCCCC
Q 009653          200 TPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQF  279 (529)
Q Consensus       200 ~~~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFDg~kRSCR~rL~rHn~RRRk~q~  279 (529)
                      .++|||+||++||+.+|+||+||||||.|+|||.|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++
T Consensus         1 ~~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~   80 (86)
T d1ul5a_           1 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV   80 (86)
T ss_dssp             CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred             CCeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 009653          280 NIHS  283 (529)
Q Consensus       280 ~~~~  283 (529)
                      ++++
T Consensus        81 ~~~g   84 (86)
T d1ul5a_          81 DKGG   84 (86)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            8754

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.6e-40  Score=272.16  Aligned_cols=80  Identities=64%  Similarity=1.117  Sum_probs=78.3

Q ss_pred             CceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhHhhhhcCCCCC
Q 009653          201 PLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQFN  280 (529)
Q Consensus       201 ~~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFDg~kRSCR~rL~rHn~RRRk~q~~  280 (529)
                      ..||||||++||+.+|+||+||+|||.|+|||.|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999875

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.2e-30  Score=204.42  Aligned_cols=57  Identities=63%  Similarity=1.145  Sum_probs=55.8

Q ss_pred             CceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccc
Q 009653          201 PLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD  257 (529)
Q Consensus       201 ~~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFD  257 (529)
                      .+|||+||++||+.+|+|||||||||.|+|||.|+|+|+++||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            379999999999999999999999999999999999999999999999999999998