Citrus Sinensis ID: 009655

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
Protein Sequence
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEcEEEEcccEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccHHHHEEHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEcccccccEEcccccccccccccccccEEEEEEEcccccccccccccHHHHccccccccccccccccccccHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccHHHEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHcccc
Coil and Loop (DISEMBL)
mnftttfrgnlsllphcssccdirfqpilaslhvtrpvrcrlgnfssykvSRFCRKKRELICRVtdtqtepdsnndkekevhdgqenqpatasdqeddksqpdsqldsqpqvenqingndvadtkggvqddgngevasgsplpgvkqldeyiriPKETIDILkdqvfgfdtffvtnqepyeggvlfkgnlrgqAAKTYEKISTRMKNKFGDQYKLFLLvnpeddkpvavvvprktlqpettavpewfaaGAFGLVTVFTLLLRNVPALQSNLlstfdnlnlltnglpGALVTALVIGVHELGHILAAKStgvelgvpyfvpswqigsfgaITRIRNIVSKREDLLKVaaagplagfSLGFVLFLVGfifppsdgigivVDASVFHESFLAGGFAKLLLgdvlkdgtpisvnPLVIWAWAGLLINAinsipageldggRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLqrgpiaplseeitdpddkyIALGVLVLFLGLLvclpypfpfsdqavsnf
Flexible Loop (DISEMBL)
mnftttfrgnlsllPHCSSCCDIRFQPILASLHVTRPVrcrlgnfssykvsrfcrkkrelicrvtdtqtepdsnndkekevhdgqenqpatasdqeddksQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNgevasgsplpgvkQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPyeggvlfkgnlrgQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPfpfsdqavsnf
Low Complexity Region (SEG)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEddksqpdsqldsqpqVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAgfslgfvlflvgfifPPSDGIGIVVDASVFHESflaggfaklllgDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTgvsivllglsslfsDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAlgvlvlflgllvclPYPFPFSDQAVSNF
Disordered region (IsUnstruct)
****TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVT********************************************************************************KQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPF********
Disordered Region (DISOPRED)
****TTFRGNLSLLPHCSSCCDIRFQPILAS*********************************************************************************************************************************ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVV**********AVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSN*
Disordered Region (DISEMBL)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDT********************************************VENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Disordered Region (DISPRO)
**********LSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDT*********************************************************************************DEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
255571887	525	metalloendopeptidase, putative [Ricinus	0.982	0.990	0.739	0.0
359486422	543	PREDICTED: uncharacterized protein LOC10	0.988	0.963	0.726	0.0
334187443	524	ethylene-dependent gravitropism-deficien	0.965	0.975	0.690	0.0
42573279	527	ethylene-dependent gravitropism-deficien	0.965	0.969	0.691	0.0
297810677	558	peptidase M50 family protein [Arabidopsi	0.965	0.915	0.658	0.0
15239226	556	ethylene-dependent gravitropism-deficien	0.965	0.919	0.655	0.0
356501144	523	PREDICTED: uncharacterized protein LOC10	0.962	0.973	0.704	0.0
356551482	520	PREDICTED: uncharacterized protein LOC10	0.958	0.975	0.698	0.0
242052155	545	hypothetical protein SORBIDRAFT_03g00653	0.896	0.869	0.659	0.0
115434462	546	Os01g0142100 [Oryza sativa Japonica Grou	0.956	0.926	0.638	0.0

>gi|255571887|ref|XP_002526886.1| metalloendopeptidase, putative [Ricinus communis] gi|223533785|gb|EEF35517.1| metalloendopeptidase, putative [Ricinus communis]

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/534 (73%), Positives = 449/534 (84%), Gaps = 14/534 (2%)

Query: 1   MNFTTTFRGNLS--LLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKR 58
           M+    FRGN +  LLP  S C          S+   R +RCRL +F  Y VSRF  +KR
Sbjct: 1   MSLIAAFRGNFTPLLLPLSSHCSSCT---SSVSVTSQRKLRCRLRDFKLYHVSRFV-EKR 56

Query: 59  ELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQING 118
            ++CRVT+T+TEPD NNDKEKEVH+G E  P T S       Q  S+ DSQP+V NQI+ 
Sbjct: 57  VIVCRVTETETEPDGNNDKEKEVHEGGETPPTTGS-----AGQVSSESDSQPRVVNQISN 111

Query: 119 ND-VADTKGGVQDDGNGEVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFFVT 175
           ND   +++   QD     VASGSPLPGVK  QLDE  RIPK TIDILKDQVFGFDTFFVT
Sbjct: 112 NDEQTNSESSTQDADAENVASGSPLPGVKTQQLDESFRIPKGTIDILKDQVFGFDTFFVT 171

Query: 176 NQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKT 235
           +QEPYEGGVLFKGNLRG+AAK+YEK++ RM+NKFGD+Y+LFLLVNPEDD+PVAVVVPRKT
Sbjct: 172 SQEPYEGGVLFKGNLRGKAAKSYEKLTNRMQNKFGDEYRLFLLVNPEDDRPVAVVVPRKT 231

Query: 236 LQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALV 295
           LQPETTAVPEWFAAGAFGLVT+FTLLLRNVPALQSNLLSTFDNL LL +GL GAL+TAL+
Sbjct: 232 LQPETTAVPEWFAAGAFGLVTIFTLLLRNVPALQSNLLSTFDNLELLKDGLSGALITALI 291

Query: 296 IGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAG 355
           +GVHE+GHIL AKS+ V+LGVPYFVPSWQIGSFGAITRI NIV KREDLLKVAAAGPLAG
Sbjct: 292 LGVHEVGHILVAKSSDVKLGVPYFVPSWQIGSFGAITRIVNIVPKREDLLKVAAAGPLAG 351

Query: 356 FSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVI 415
           F+LGFVLFLVGF+ PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GTPISVNPLVI
Sbjct: 352 FALGFVLFLVGFVLPPSDGIGLVVDASVFHESFLAGGIAKLLLGDALKEGTPISVNPLVI 411

Query: 416 WAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVV 475
           WAWAG+LINAINSIPAGELDGGRI FA+WGRKAS R T VSI LLG+S+LF+DV FYWVV
Sbjct: 412 WAWAGMLINAINSIPAGELDGGRILFAIWGRKASARFTAVSIGLLGISALFNDVAFYWVV 471

Query: 476 LVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 529
           L+ FLQRGPIAPLSEEITDP++KY++LG+LVL LGLLVCLPYPFPF+D+ +++F
Sbjct: 472 LIAFLQRGPIAPLSEEITDPEEKYVSLGILVLLLGLLVCLPYPFPFTDEVLTSF 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486422|ref|XP_002271131.2| PREDICTED: uncharacterized protein LOC100267324 [Vitis vinifera] gi|297736633|emb|CBI25504.3| unnamed protein product [Vitis vinifera]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/549 (72%), Positives = 455/549 (82%), Gaps = 26/549 (4%)

Query: 1   MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRF-CRKKRE 59
           MNF  TFRGN +   HCSSCCD+RFQP L+S  V R  RCR+ N   ++VSR   R++  
Sbjct: 1   MNFPATFRGNFNPFSHCSSCCDLRFQPFLSSPIVWRQKRCRISNLQVHQVSRLGSRRRPR 60

Query: 60  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQ---- 115
           ++C VT+T+TEP++NND+EK  H+     P+      D   Q D QLDSQP V +Q    
Sbjct: 61  IVCGVTETETEPENNNDEEK-AHENGGMPPSI-----DSTVQNDPQLDSQPLVADQDKDQ 114

Query: 116 ------INGNDVADT-------KGGVQDDGNGEVASGSPLPGVKQ--LDEYIRIPKETID 160
                 +NG+++ ++       +G VQD  N EVASGSPLPGVK   LDE IRIPKETID
Sbjct: 115 FVHNAMLNGDNMVNSDNQETEAQGNVQDSENLEVASGSPLPGVKPQVLDESIRIPKETID 174

Query: 161 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVN 220
           ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRG+AAK+YEKI+ RM+++FGD+YKLFLL+N
Sbjct: 175 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGKAAKSYEKITIRMQDRFGDKYKLFLLIN 234

Query: 221 PEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLN 280
           PEDDKPVAVVVPR TLQPETTAVPEWFAAGAFGLVTVFTL LRNVPALQSNLLS FDNLN
Sbjct: 235 PEDDKPVAVVVPRNTLQPETTAVPEWFAAGAFGLVTVFTLFLRNVPALQSNLLSVFDNLN 294

Query: 281 LLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSK 340
           LL +GLPGALVTALV+G HE+ HIL A+STG++LGVPYFVPSWQIGSFGAITRI NIV  
Sbjct: 295 LLMDGLPGALVTALVLGTHEISHILVARSTGIKLGVPYFVPSWQIGSFGAITRILNIVPN 354

Query: 341 REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGD 400
           REDLLKVAAAGP+AGFSLG VL L+GF+ PPSDGIG+VVDASVFHES LAGG AKLLLGD
Sbjct: 355 REDLLKVAAAGPIAGFSLGLVLLLLGFLLPPSDGIGVVVDASVFHESLLAGGIAKLLLGD 414

Query: 401 VLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLL 460
           VLK+GTPISVNPL+IWAWAGLLINAINSIPAGELDGGRI+FA+WGRKAS R T  SI LL
Sbjct: 415 VLKEGTPISVNPLLIWAWAGLLINAINSIPAGELDGGRISFAIWGRKASARFTAASIALL 474

Query: 461 GLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFP 520
           GLSSLF+DV FYWVVL+FFLQRGPIAPLSEEITDP+DKY+ALGV+VL LGLLVCLPYPFP
Sbjct: 475 GLSSLFNDVAFYWVVLIFFLQRGPIAPLSEEITDPEDKYVALGVVVLLLGLLVCLPYPFP 534

Query: 521 FSDQAVSNF 529
           F+++   +F
Sbjct: 535 FTNEVTVSF 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187443|ref|NP_001190232.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003536|gb|AED90919.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/526 (69%), Positives = 426/526 (80%), Gaps = 15/526 (2%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRE 59
           MN    +FRGN  +L  CSSCC ++FQP +A+   T  +       S  K      +KRE
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAA---TSSLNFGQTGTSRRKKDLKLERKRE 57

Query: 60  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 119
            + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+  GN
Sbjct: 58  TLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEAPGN 109

Query: 120 DVADTKGGVQDDGNG-EVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFFVTN 176
           +  +       DG+  EV+SGSPLPGV   QLD+ +R+PKETIDIL+ QVFGFDTFFVT+
Sbjct: 110 EEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFFVTS 169

Query: 177 QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTL 236
           QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L
Sbjct: 170 QEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSL 229

Query: 237 QPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVI 296
           +PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTALV+
Sbjct: 230 EPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTALVL 289

Query: 297 GVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF 356
           GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGF
Sbjct: 290 GVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGF 349

Query: 357 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 416
           SLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+NPLVIW
Sbjct: 350 SLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLNPLVIW 409

Query: 417 AWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVL 476
           AWAGLLIN INSIPAGELDGG+IAF++WGRK +TRLTG SI LLGLS+LFSDV FYWVVL
Sbjct: 410 AWAGLLINGINSIPAGELDGGKIAFSIWGRKTATRLTGASIALLGLSALFSDVAFYWVVL 469

Query: 477 VFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 522
           +FFLQRGPIAPL+EEIT PDDKY++LG+LVLFL LLVCLPYPF F+
Sbjct: 470 IFFLQRGPIAPLAEEITVPDDKYVSLGILVLFLSLLVCLPYPFAFT 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573279|ref|NP_974736.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003534|gb|AED90917.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/529 (69%), Positives = 429/529 (81%), Gaps = 18/529 (3%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRFCRK 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       K+ R  RK
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSR--RKKDLKLERVFRK 58

Query: 57  KRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQI 116
            RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+ 
Sbjct: 59  -RETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEA 109

Query: 117 NGNDVADTKGGVQDDGNG-EVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFF 173
            GN+  +       DG+  EV+SGSPLPGV   QLD+ +R+PKETIDIL+ QVFGFDTFF
Sbjct: 110 PGNEEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFF 169

Query: 174 VTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPR 233
           VT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR
Sbjct: 170 VTSQEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPR 229

Query: 234 KTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTA 293
           ++L+PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTA
Sbjct: 230 RSLEPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTA 289

Query: 294 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPL 353
           LV+GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPL
Sbjct: 290 LVLGVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPL 349

Query: 354 AGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPL 413
           AGFSLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+NPL
Sbjct: 350 AGFSLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLNPL 409

Query: 414 VIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYW 473
           VIWAWAGLLIN INSIPAGELDGG+IAF++WGRK +TRLTG SI LLGLS+LFSDV FYW
Sbjct: 410 VIWAWAGLLINGINSIPAGELDGGKIAFSIWGRKTATRLTGASIALLGLSALFSDVAFYW 469

Query: 474 VVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 522
           VVL+FFLQRGPIAPL+EEIT PDDKY++LG+LVLFL LLVCLPYPF F+
Sbjct: 470 VVLIFFLQRGPIAPLAEEITVPDDKYVSLGILVLFLSLLVCLPYPFAFT 518

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810677|ref|XP_002873222.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319059|gb|EFH49481.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/560 (65%), Positives = 433/560 (77%), Gaps = 49/560 (8%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHV-----TRPVRCRLGNFSSYKVSRFC 54
           MN    +FRGN  +L  CSS C ++FQP +A+        TR  R +     + K+ R  
Sbjct: 1   MNLAVASFRGNFGVLSQCSSYCSLQFQPFVAATSSLNFGQTRTSRRK----KNLKLERVF 56

Query: 55  RKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 114
           RK RE + RVT+TQTEP+ NND++    +G+E    T++D  D  +Q  ++L+SQ  + N
Sbjct: 57  RK-RETLVRVTETQTEPEGNNDEDNNGEEGKE----TSAD--DPPTQIPTELNSQSTIVN 109

Query: 115 QINGNDVADTKGGVQDDGNG-EVASGSPLPGVK--------------------------- 146
           +  GN+  +       DG+  EV+SGSPLPGV                            
Sbjct: 110 EAPGNEEENKAQLSSQDGDKLEVSSGSPLPGVNVSITNNVKYKGDSLMLSIYLSFIKSCC 169

Query: 147 ----QLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIS 202
               QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI 
Sbjct: 170 EQPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGEPAKSYEKIK 229

Query: 203 TRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLL 262
           TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL L
Sbjct: 230 TRMENNFGDQYKLFLLSNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFL 289

Query: 263 RNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPS 322
           RNVPALQS+LLS FDNL LL +GLPGALVT LV+GVHELGHIL A S G++LGVP+FVPS
Sbjct: 290 RNVPALQSDLLSAFDNLELLKDGLPGALVTTLVLGVHELGHILVANSLGIKLGVPFFVPS 349

Query: 323 WQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDAS 382
           WQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDAS
Sbjct: 350 WQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLLGLFVPPSDGIGVVVDAS 409

Query: 383 VFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA 442
           VFHESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGGRIAF+
Sbjct: 410 VFHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGRIAFS 469

Query: 443 LWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAL 502
           +WGRK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++L
Sbjct: 470 IWGRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITAPDDKYVSL 529

Query: 503 GVLVLFLGLLVCLPYPFPFS 522
           G+LVLFL LLVCLPYPF F+
Sbjct: 530 GILVLFLSLLVCLPYPFAFT 549

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239226|ref|NP_196193.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|9759099|dbj|BAB09668.1| unnamed protein product [Arabidopsis thaliana] gi|332003535|gb|AED90918.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/558 (65%), Positives = 429/558 (76%), Gaps = 47/558 (8%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRFCRK 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       K+ R  RK
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSR--RKKDLKLERVFRK 58

Query: 57  KRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQI 116
            RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+ 
Sbjct: 59  -RETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEA 109

Query: 117 NGNDVADTKGGVQDDGNG-EVASGSPLPGVK----------------------------- 146
            GN+  +       DG+  EV+SGSPLPGV                              
Sbjct: 110 PGNEEENKAQFSSQDGDKLEVSSGSPLPGVNVSIIIHVIYKDDSIMFSGCLSFIKSCCEQ 169

Query: 147 --QLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTR 204
             QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI TR
Sbjct: 170 PLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTR 229

Query: 205 MKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRN 264
           M+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRN
Sbjct: 230 MENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRN 289

Query: 265 VPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQ 324
           VPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSWQ
Sbjct: 290 VPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQ 349

Query: 325 IGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVF 384
           IGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDASVF
Sbjct: 350 IGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASVF 409

Query: 385 HESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALW 444
           HESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++W
Sbjct: 410 HESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSIW 469

Query: 445 GRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGV 504
           GRK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++LG+
Sbjct: 470 GRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLGI 529

Query: 505 LVLFLGLLVCLPYPFPFS 522
           LVLFL LLVCLPYPF F+
Sbjct: 530 LVLFLSLLVCLPYPFAFT 547

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501144|ref|XP_003519388.1| PREDICTED: uncharacterized protein LOC100778800 [Glycine max]

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/531 (70%), Positives = 433/531 (81%), Gaps = 22/531 (4%)

Query: 5   TTFRGNLSL-LPHCSSC--CDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELI 61
           + FRGNL + L  C+SC   D+RFQ      H     RCR   F   +  R  R+ R + 
Sbjct: 9   SAFRGNLLVPLSRCTSCFKLDLRFQHSDGFRHS----RCRRSLFKLIRDPRSSRR-RGIA 63

Query: 62  CRVTDTQTEPDSNND-KEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGND 120
           C VT    EPD+ +D KEKE     E      S ++      D++  ++   EN+   +D
Sbjct: 64  CSVT----EPDNGSDEKEKEADKNGETLRVEDSSEQSIPPPVDAEQLNEFSDENK-GQSD 118

Query: 121 VADTKGGVQDDGNGEVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFFVTNQE 178
           V +      DD N EVASGSPLPGVK  +LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+
Sbjct: 119 VQN-----MDDSN-EVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQD 172

Query: 179 PYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQP 238
           PYEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPEDDKPVAVVVPR TLQP
Sbjct: 173 PYEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDDKPVAVVVPRTTLQP 232

Query: 239 ETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGV 298
           ETTAVPEWFAAG+FGL+TVFTLLLRNVPALQS+LLSTFDNLNLL +GLPGALVTAL++GV
Sbjct: 233 ETTAVPEWFAAGSFGLITVFTLLLRNVPALQSDLLSTFDNLNLLKDGLPGALVTALILGV 292

Query: 299 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSL 358
           HELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++L
Sbjct: 293 HELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYAL 352

Query: 359 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW 418
           G +L L+GF+ PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAW
Sbjct: 353 GLLLLLLGFVLPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAW 412

Query: 419 AGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVF 478
           AGLLINAINSIPAGELDGGRI+FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+F
Sbjct: 413 AGLLINAINSIPAGELDGGRISFALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLIF 472

Query: 479 FLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 529
           FLQRGPIAPLSEEITDP +KY+A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 473 FLQRGPIAPLSEEITDPGEKYVAIGVTVLLLGLLVCLPYPFPFTEETITSF 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551482|ref|XP_003544103.1| PREDICTED: uncharacterized protein LOC100816506 [Glycine max]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/530 (69%), Positives = 436/530 (82%), Gaps = 23/530 (4%)

Query: 5   TTFRGNLSL-LPHCSSCC--DIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELI 61
           ++FRGNL + L  C+SC   D+R Q      H+ RP       +SS+K+ R  R+ R + 
Sbjct: 9   SSFRGNLLVPLSRCTSCLELDLRIQHSEGFRHL-RP------RWSSFKLIRNPRR-RVIA 60

Query: 62  CRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDV 121
           C VT+     + +++KEKE     E  P   S ++      D++  ++   EN+   +DV
Sbjct: 61  CSVTEPH---NGSDEKEKEADKNGETLPLEDSSEQSIPPPVDAEQINEFSDENK-GQSDV 116

Query: 122 ADTKGGVQDDGNGEVASGSPLPGVK--QLDEYIRIPKETIDILKDQVFGFDTFFVTNQEP 179
            +      DD N EVASGSPLPGVK  +LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+P
Sbjct: 117 QN-----MDDSN-EVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQDP 170

Query: 180 YEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPE 239
           YEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPED+ PVAVVVPR TLQPE
Sbjct: 171 YEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDNMPVAVVVPRTTLQPE 230

Query: 240 TTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVH 299
           TTAVPEWFAAG+FGLVTVFTLLLRNVP+LQS+LLSTFDNLNLL +GLPGALVTAL++GVH
Sbjct: 231 TTAVPEWFAAGSFGLVTVFTLLLRNVPSLQSDLLSTFDNLNLLKDGLPGALVTALILGVH 290

Query: 300 ELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG 359
           ELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++LG
Sbjct: 291 ELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYALG 350

Query: 360 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWA 419
            +L L+GFI PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAWA
Sbjct: 351 LLLLLLGFILPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAWA 410

Query: 420 GLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFF 479
           GLLINAINSIPAGELDGGRI+FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+FF
Sbjct: 411 GLLINAINSIPAGELDGGRISFALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLIFF 470

Query: 480 LQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 529
           LQRGPIAPLSEEITDP +KY+A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 471 LQRGPIAPLSEEITDPGEKYVAIGVTVLLLGLLVCLPYPFPFTEETLTSF 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052155|ref|XP_002455223.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor] gi|241927198|gb|EES00343.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/487 (65%), Positives = 395/487 (81%), Gaps = 13/487 (2%)

Query: 56  KKRELICR-VTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 114
           + R++ C+ +T+T++E D + +++KE  D   +    +  + +  ++ DS +D++     
Sbjct: 55  RSRKVACQAMTETESEGDGDKEEKKEFGDDASSPSVDSVAEANGPAESDSSIDNKKDETA 114

Query: 115 QINGNDVADTKGGVQDDGNG-----------EVASGSPLPGVKQ-LDEYIRIPKETIDIL 162
                  +DT   V  D              EV SGSPLPG+KQ LD+ +RIPK TIDIL
Sbjct: 115 NAELLSSSDTVQNVDGDATSTNDVQENVEVIEVVSGSPLPGMKQQLDDSVRIPKATIDIL 174

Query: 163 KDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPE 222
           KDQVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI+ R++NKFGD+YKLFLL+NPE
Sbjct: 175 KDQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPAKSYEKITNRLQNKFGDEYKLFLLINPE 234

Query: 223 DDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLL 282
           D+KPVAVV+P++TLQPETTA+PEWFAA +FG+VT+FTLLLRNVP LQ NLLSTFDNL LL
Sbjct: 235 DEKPVAVVIPKQTLQPETTALPEWFAAASFGIVTIFTLLLRNVPVLQDNLLSTFDNLELL 294

Query: 283 TNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKRE 342
            +GL GALVTAL+IGVHE+GHILAA+ +G++LGVPYFVPSWQIGSFGAITRI NIV  RE
Sbjct: 295 KDGLSGALVTALIIGVHEIGHILAARESGIKLGVPYFVPSWQIGSFGAITRIVNIVRNRE 354

Query: 343 DLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVL 402
           DLLK+AAAGPLAGFS GFVL L+GFI PPSDG+G+V+D +VFHESFL GG AKLLLGDVL
Sbjct: 355 DLLKLAAAGPLAGFSFGFVLLLLGFILPPSDGLGLVIDPTVFHESFLVGGLAKLLLGDVL 414

Query: 403 KDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGL 462
           K+GT +S+NPLV+WAWAGLLINAINSIPAGELDGGRIA A+WGRK S+R++ ++I LLG+
Sbjct: 415 KEGTELSINPLVLWAWAGLLINAINSIPAGELDGGRIALAIWGRKISSRVSSLAIGLLGI 474

Query: 463 SSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 522
           S+LF+DV FYWVVL+FFLQRGPIAPLSEEITDP+  YI +GV +L  GLLVCLPYPFPF 
Sbjct: 475 SALFNDVAFYWVVLIFFLQRGPIAPLSEEITDPESNYIGIGVAILLFGLLVCLPYPFPFD 534

Query: 523 DQAVSNF 529
              +++ 
Sbjct: 535 PSQLTDM 541

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115434462|ref|NP_001041989.1| Os01g0142100 [Oryza sativa Japonica Group] gi|113531520|dbj|BAF03903.1| Os01g0142100 [Oryza sativa Japonica Group] gi|222617713|gb|EEE53845.1| hypothetical protein OsJ_00322 [Oryza sativa Japonica Group]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/525 (63%), Positives = 411/525 (78%), Gaps = 19/525 (3%)

Query: 20  CCDIRFQPILASLHVT-RPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKE 78
           CC  R      SL  T RP R  L   S++ +    R +R +   +T+T+ + D N D+E
Sbjct: 24  CCQ-RILLASTSLPATGRPARLGLKLRSTHSLQ--IRNRRFVCQAMTETEPDGDGNGDEE 80

Query: 79  KEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNG---- 134
           KE      + P+  S  +++ S  +S+ ++    +  +N   ++ +      DG+     
Sbjct: 81  KEELGDDASSPSVDSVTQENGSA-ESETNADNTKDETVNTEPLSSSDTVQNIDGDATPAS 139

Query: 135 ---------EVASGSPLPGVKQ-LDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGV 184
                    +VA GSPLPG+KQ LDE +RIPK TIDILKDQVFGFDTFFVT+QEPYEGG+
Sbjct: 140 DAQENVEVVDVAVGSPLPGMKQQLDESVRIPKATIDILKDQVFGFDTFFVTSQEPYEGGI 199

Query: 185 LFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVP 244
           LFKGNLRGQ AK+YEKI+ R++NKFGDQYKLFLL+NPEDDKPVAVVVPR+TLQPETTAVP
Sbjct: 200 LFKGNLRGQPAKSYEKITNRLQNKFGDQYKLFLLINPEDDKPVAVVVPRQTLQPETTAVP 259

Query: 245 EWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHI 304
           EWFAA +FG+VT+FTLLLRNVP LQ NLLSTFDNL LL +G+ GALVTA +IGVHE+ HI
Sbjct: 260 EWFAAASFGVVTIFTLLLRNVPLLQDNLLSTFDNLELLKDGVYGALVTAAIIGVHEIAHI 319

Query: 305 LAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFL 364
           LAA+ TG++L VPYFVPSWQIGSFGAITRI NIV  REDLLKVAAAGPLAGFSLGFVL L
Sbjct: 320 LAARDTGIKLAVPYFVPSWQIGSFGAITRIVNIVRNREDLLKVAAAGPLAGFSLGFVLLL 379

Query: 365 VGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLIN 424
           +GFI PPSDG+G+V+D +VFHESFL GG AKL+LGD LK+GT +S+NPLV+WAWAGLLIN
Sbjct: 380 LGFILPPSDGLGLVIDPAVFHESFLVGGLAKLILGDALKEGTKLSINPLVLWAWAGLLIN 439

Query: 425 AINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGP 484
           AINSIPAGELDGGRIAFA+WGRK S+R++ ++I LLG+S+LF+DV FYWVVL+FFLQRGP
Sbjct: 440 AINSIPAGELDGGRIAFAMWGRKISSRISSLAIGLLGISALFNDVAFYWVVLIFFLQRGP 499

Query: 485 IAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 529
           I+PLSEEIT+P++ YI++GV +L  GLLVCLPYPFPF    +++F
Sbjct: 500 ISPLSEEITEPENNYISIGVAILLFGLLVCLPYPFPFDPSQLTDF 544

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.710	0.676	0.707	2.6e-160
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.410	0.395	0.290	1.6e-28
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	0.640	0.591	0.239	1.1e-18

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1388 (493.7 bits), Expect = 2.6e-160, Sum P(2) = 2.6e-160
 Identities = 266/376 (70%), Positives = 299/376 (79%)

Query:   147 QLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMK 206
             QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+
Sbjct:   172 QLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTRME 231

Query:   207 NKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVP 266
             N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRNVP
Sbjct:   232 NNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRNVP 291

Query:   267 ALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIG 326
             ALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSWQIG
Sbjct:   292 ALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQIG 351

Query:   327 SFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIGIVVDASVFHE 386
             SFGAITRI+NIV+KREDLLKVAAAGPLA               PPSDGIG+VVDASVFHE
Sbjct:   352 SFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASVFHE 411

Query:   387 SXXXXXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR 446
             S            D LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++WGR
Sbjct:   412 SFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSIWGR 471

Query:   447 KASTRLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAXXXXX 506
             K +TRLT              DV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++     
Sbjct:   472 KTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLGILV 531

Query:   507 XXXXXXXXXPYPFPFS 522
                      PYPF F+
Sbjct:   532 LFLSLLVCLPYPFAFT 547

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 65/224 (29%), Positives = 96/224 (42%)

Query:   278 NLNLLTNGLPGALVTAL-VIGV---HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 333
             ++ LL   +  AL  A  V+G+   HELGH LAA    V+L +PYF+P+  +GSFGAIT+
Sbjct:   286 DMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFIPNITLGSFGAITQ 345

Query:   334 IRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXX--XXPPSDGIGIV-VDASVFHESXXX 390
              ++I+  R   + ++ AGP A                  P     +V V + +F  S   
Sbjct:   346 FKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTEPDAANDLVQVPSMLFQGSLLL 405

Query:   391 XXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKAST 450
                              +S++PLVI  W GL   A N +P G LDGGR     +G+ A  
Sbjct:   406 GLISRATLGYAALHAATVSIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGKNALV 465

Query:   451 RLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITD 494
                               +   W + V   QR P  P   ++T+
Sbjct:   466 TFGLSTYVMLGLRVLGGPLALPWGLYVLICQRTPEKPCLNDVTE 509

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 88/368 (23%), Positives = 152/368 (41%)

Query:   157 ETIDILK-DQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKL 215
             + +D+ K    FGFDTFF T+   +  G +F GNLR    +   K+  ++    G    +
Sbjct:   176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query:   216 FLLVNPEDD--KPVAVVVPRKT--LQPETTAVPE-WFAAGAFGL-VTVF-TLLLRNVPAL 268
             + +    ++  K V +V P+    LQ E+T +   W    A  L VT F T+ L +   L
Sbjct:   236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query:   269 QSNLLSTFDNLNLLTNGLP--GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIG 326
             + +  +TFD+   + N +P  G  ++  ++GV E+   + A   GV+L   + VPS   G
Sbjct:   296 KPD--ATFDDY--IANVVPLFGGFLS--ILGVSEIATRVTAARHGVKLSPSFLVPSNWTG 349

Query:   327 SFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIG---IVVDASV 383
               G +    +++  ++ L  +  A   +                 S   G   + +    
Sbjct:   350 CLGVMNNYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYIRPQF 409

Query:   384 FHESXXXXXXX------XXXXXDVLK---DGTPISVNPLVIWAWAGLLINAINSIPAGEL 434
             F  +                  +VL    +G  + V+PL      G+++ ++N +P G L
Sbjct:   410 FDNNPLLSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRL 469

Query:   435 DGGRIAFALWGRKASTRLTXXXXXXXXXXXXXXDVT-FYWVVLVFFLQRGPIAPLSEEIT 493
             +GGRIA A++GR  +  L+               V    W +   F + G   P  +EIT
Sbjct:   470 EGGRIAQAMFGRSTAAILSFTTSLLLGIGGLSGSVLCLAWGLFATFFRGGEETPAKDEIT 529

Query:   494 DPDDKYIA 501
                D   A
Sbjct:   530 PVGDDRFA 537

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.85	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029258001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (543 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00007398001	SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_189, whole genome sho [...] (302 aa)				•			•		0.496
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.479
	GSVIVG00017440001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (113 aa)			•	•					0.465
	GSVIVG00016388001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (214 aa)				•			•		0.465
	GSVIVG00002190001	SubName- Full=Chromosome undetermined scaffold_127, whole genome shotgun sequence; (437 aa)			•	•					0.463
	GSVIVG00023602001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (180 aa)			•	•					0.453
	GSVIVG00019306001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (234 aa)			•	•					0.448
	GSVIVG00024719001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (396 aa)				•			•		0.420
	GSVIVG00022091001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (845 aa)				•			•		0.418
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)				•			•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	529
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	7e-35
pfam02163	206	pfam02163, Peptidase_M50, Peptidase family M50	7e-19
cd05709	180	cd05709, S2P-M50, Site-2 protease (S2P) class of z	2e-16
cd06161	208	cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease	1e-15
cd06164	227	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 prote	2e-11
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	4e-06
cd06163	182	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 p	4e-05
COG1994	230	COG1994, SpoIVFB, Zn-dependent proteases [General	8e-04
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	0.004

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score =  128 bits (325), Expect = 7e-35
 Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 51/231 (22%)

Query: 251 AFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKST 310
              ++T+ T LL        +      N  LL  GLP AL    ++G+HE+GH LAA+  
Sbjct: 2   LLLVLTLLTTLL---VGAWLSGNDVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRH 58

Query: 311 GVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFP 370
           GV+  +PYF+P   IG+FGA  R+R+ +  R+ L  +A AGPLAG  L   + ++G    
Sbjct: 59  GVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---- 114

Query: 371 PSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP 430
                                                     L +  W GLL+ A+N +P
Sbjct: 115 ------------------------------------------LAVAGWVGLLVTALNLLP 132

Query: 431 AGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT--FYWVVLVFF 479
            G+LDGG I  AL+GR+ +  +    +V LGL +L+   +    W +L+  
Sbjct: 133 VGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLLLI 183

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|216910 pfam02163, Peptidase_M50, Peptidase family M50

 Score = 84.8 bits (210), Expect = 7e-19
 Identities = 49/209 (23%), Positives = 68/209 (32%), Gaps = 30/209 (14%)

Query: 287 PGALVTALVIGVHELGHILAAKSTGVE-----------------LGVPYFVPSWQIGSFG 329
              L   + + VHELGH L A+  GV+                     Y +      +FG
Sbjct: 1   AFILALLISVVVHELGHALVARRFGVKVERFAIGFGPLLFKHLDGATEYTIRLMFGWAFG 60

Query: 330 AITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 389
           A    R         L ++ AGPLA F L  +LF +  + P        V   V   S  
Sbjct: 61  APIERRFKKKSPWQRLLISLAGPLANFILALLLFALLLLLPG--IPVPPVIGGVVVGSSK 118

Query: 390 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---- 445
             G   +             V  L   A   L +   N +P   LDGG I  +L      
Sbjct: 119 LSGPVAIAKV-GSTSALSGLVALLAFLALLNLNLGLFNLLPIPPLDGGHILRSLLAVRGR 177

Query: 446 ------RKASTRLTGVSIVLLGLSSLFSD 468
                       +    ++LL L  LF+D
Sbjct: 178 PLNERAENYIYLVGLALLLLLILLLLFND 206

Length = 206

>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 47/200 (23%), Positives = 61/200 (30%), Gaps = 43/200 (21%)

Query: 286 LPGALVTALVIGVHELGHILAAKSTG--VELGVPYFVPSWQIGS---------FGAITRI 334
           L   L   + + VHELGH L A+  G  V      F  +               G   + 
Sbjct: 1   LAFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKP 60

Query: 335 -----RNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 389
                R     R   L VA AGPLA   L  +L L+  +        +   AS    + L
Sbjct: 61  VGENPRAFKKPRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLL 120

Query: 390 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---R 446
           A                          A   L +   N +P   LDGGRI  AL      
Sbjct: 121 AFL------------------------ALINLNLAVFNLLPIPPLDGGRILRALLEAIRG 156

Query: 447 KASTRLTGVSIVLLGLSSLF 466
           +   RL      +L    L 
Sbjct: 157 RVEERLEAYGFAILLGLLLL 176

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-binding proteins (SREBPs) from membranes of the ER. These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD superfamily. Prokaryotic S2P/M50 homologs have been shown to regulate stress responses, sporulation, cell division, and cell differentiation. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses, and in Bacillus subtilis, the S2P homolog SpoIVFB is involved in the pro-sigmaK pathway of spore formation. Some of the subfamilies within this hierarchy contain one or two PDZ domain insertions, with putative regulatory roles, such as the inhibition of substrate cleavage as seen by the RseP PDZ domain. Length = 180

>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 75.7 bits (187), Expect = 1e-15
 Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 51/207 (24%)

Query: 285 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 344
           GL  AL+  L + +HELGH L A+  G+       V S  +  FG +  +       ++ 
Sbjct: 30  GLLEALLLFLSVLLHELGHALVARRYGIR------VRSITLLPFGGVAELEEEPETPKEE 83

Query: 345 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 404
             +A AGPL    L  + +L+  + P                        + L       
Sbjct: 84  FVIALAGPLVSLLLAGLFYLLYLLLPGGG---------------PLSSLLEFL------- 121

Query: 405 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRKASTR-------LT 453
                       A   L++   N +PA  LDGGR+  AL     G + +TR       L 
Sbjct: 122 ------------AQVNLILGLFNLLPALPLDGGRVLRALLWRRTGYRRATRIAARIGQLF 169

Query: 454 GVSIVLLGLSSLFSDVTFYWVVLVFFL 480
            + +V+LGL  LF  +   W++L+   
Sbjct: 170 AILLVVLGLFLLFLGLGNLWLLLIALF 196

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. Length = 208

>gnl|CDD|100085 cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 55/213 (25%), Positives = 81/213 (38%), Gaps = 52/213 (24%)

Query: 285 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 344
           GL  AL+    + +HELGH L A+  G+       V S  +  FG + R+          
Sbjct: 45  GLAAALLLFASVLLHELGHSLVARRYGIP------VRSITLFLFGGVARLEREPETPGQE 98

Query: 345 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 404
             +A AGPL    L  +  L+    P S              +   G     L       
Sbjct: 99  FVIAIAGPLVSLVLALLFLLLSLALPGSG-------------AGPLGVLLGYL------- 138

Query: 405 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA-LWGRK---------AST--RL 452
                       A   LL+   N +PA  LDGGR+  A LW R          A+   R 
Sbjct: 139 ------------ALINLLLAVFNLLPAFPLDGGRVLRALLWRRTGDYLKATRIAAWVGRG 186

Query: 453 TGVSIVLLGLSSLFSDVT--FYWVVLVFFLQRG 483
             V +++LGL SLF ++    + +++ +FL  G
Sbjct: 187 FAVLLIILGLLSLFLNLLGGLWLILIAWFLYIG 219

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 227

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 39/204 (19%), Positives = 62/204 (30%), Gaps = 21/204 (10%)

Query: 285 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR-------IRNI 337
           G    L+T LVI +    H +AA+        P  +P  + G                  
Sbjct: 176 GDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPVVIPL-KPGDKIVAVDVGAIGLSPNGE 234

Query: 338 VSKREDLLKVAAAGPLAGFSLGF--VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAK 395
               + L+K    GPL    L       LV         + I  D S+     L+G    
Sbjct: 235 PDVGKVLVKY---GPLEAVGLAVEKTGRLVKLTLKMLKKL-ITGDLSL---KNLSGPIGI 287

Query: 396 LLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGV 455
             +         I  N L   A   + +  +N +P   LDGG + F L       +    
Sbjct: 288 AKIAGAAASLGLI--NLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEAL-RGKPLSE 344

Query: 456 SIVLLGLSSLFSDVTFYWVVLVFF 479
            +         + +    ++L  F
Sbjct: 345 RVEAALYRIGLALLLL-LMLLATF 367

Length = 375

>gnl|CDD|100084 cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 59/207 (28%), Positives = 83/207 (40%), Gaps = 51/207 (24%)

Query: 286 LPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFG-AITRIRNIVSKREDL 344
           L   LV  ++I VHELGH L AK  GV+      V  + IG FG  +   +    K E  
Sbjct: 2   LAFILVLGILIFVHELGHFLVAKLFGVK------VEEFSIG-FGPKLFSFK----KGETE 50

Query: 345 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHES--------FLAGGFAKL 396
             ++A  PL     G+V  L G    P +      D   F+            AG  A  
Sbjct: 51  YSISAI-PLG----GYVKML-GED--PEEEADPEDDPRSFNSKPVWQRILIVFAGPLANF 102

Query: 397 LLGDVLKDGTPISVNPLVIWAWAGLL-IN--AINSIPAGELDGGRIAFALW----GRKAS 449
           LL  VL           V+ ++  LL IN   +N +P   LDGG + F L     GR  S
Sbjct: 103 LLAIVLF---------AVLLSFLALLSINLGILNLLPIPALDGGHLLFLLIEAIRGRPLS 153

Query: 450 TRLTGVS-------IVLLGLSSLFSDV 469
            ++  +        ++ L L   F+D+
Sbjct: 154 EKVEEIIQTIGFALLLGLMLFVTFNDI 180

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA. Length = 182

>gnl|CDD|224905 COG1994, SpoIVFB, Zn-dependent proteases [General function prediction only]

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 39/188 (20%), Positives = 58/188 (30%), Gaps = 41/188 (21%)

Query: 299 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAI-TRIRNIVSKREDLLKVA-AAGPLAGF 356
           H LGH   A   G++L +         G    +    R     R     V+ A GPL   
Sbjct: 58  HPLGHSDEAGRLGLKLLLALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPLTNI 117

Query: 357 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 416
           +L  +  L   +F                 S L    A L L           VN     
Sbjct: 118 ALAVLGLLALSLFLYH--------------SVLFAFLAALAL-----------VN----- 147

Query: 417 AWAGLLINAINSIPAGELDGGRIAFALWGRKAS-----TRLTGVSIVLLGLSSLFSDVTF 471
               L++   N +P   LDGGR+  AL  R+         L  +  +L+ + +    +  
Sbjct: 148 ----LVLALFNLLPIPPLDGGRVLRALLPRRYGAAIAAIELAALLGLLVLILAGILGLLV 203

Query: 472 YWVVLVFF 479
               L   
Sbjct: 204 LNPPLRLI 211

Length = 230

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 37/232 (15%)

Query: 301 LGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGF 360
           L   L A+  G    V       +       +RIR +V+    LL +   GPL G  L  
Sbjct: 161 LEAYLGAQGIGALGTVFQAAIISRSLPRFLRSRIRRLVA---QLLYLLLLGPLGGLLLAL 217

Query: 361 VLFLVGFIFPP------SDGIGIVVDASVFHESFLAGGFAKLL--LGDVLKDGTPISVNP 412
           +L  +  +F        + G+  ++  S  H + LAG F  LL  LG  +    P+ +  
Sbjct: 218 LLGELSGLFKELWEAFRALGLAHLLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGL 277

Query: 413 L-VIWAW-AGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT 470
           L + +A   G   + + ++         +A AL    +   L+ + I+LL   ++   + 
Sbjct: 278 LALFYAILTGFSPSVLRALVM-------LALALLASLSLRNLSSIFILLLSAIAILL-LA 329

Query: 471 FYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 522
              ++ + F        LS         ++A+  L+L+  L   L   +P  
Sbjct: 330 PLAILSLGF-------WLS---------FLAVAALILWSQLFRLLGLSWPLP 365

Length = 453

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	529
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	99.97
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.94
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.91
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.86
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.85
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.82
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	99.79
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	99.76
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	99.76
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.55
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.52
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	99.34
COG0750	375	Predicted membrane-associated Zn-dependent proteas	98.9
PF13398	200	Peptidase_M50B: Peptidase M50B-like	97.4
COG0750	375	Predicted membrane-associated Zn-dependent proteas	96.16
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	95.88

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.97  E-value=3.1e-31  Score=253.23  Aligned_cols=177  Identities=40%  Similarity=0.706  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHhhccccccccccccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeeeeeE
Q 009655          252 FGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI  331 (529)
Q Consensus       252 l~l~Tl~Tt~~~~~~~L~~~~~~~~~~~~~l~~glp~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGtFGAv  331 (529)
                      ++++|+.+....+.-... +  +..++++.+..+++++++++.++++||+||+++||++|+|++.++++|...+|++|++
T Consensus         3 ~~~~s~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~   79 (183)
T cd06160           3 LLVLTLLTTLLVGAWLSG-N--DVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAF   79 (183)
T ss_pred             HHHHHHHHHHHHHHHHhc-c--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEE
Confidence            456677776655421111 1  2236678889999999999999999999999999999999999999998779999999


Q ss_pred             EeeccccCCcccceeeEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccch
Q 009655          332 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVN  411 (529)
Q Consensus       332 i~~~s~~~~RkalfdIAiAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lh  411 (529)
                      +++++..++|+++++|++|||++|+++++++++++                                             
T Consensus        80 ~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~~---------------------------------------------  114 (183)
T cd06160          80 IRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---------------------------------------------  114 (183)
T ss_pred             EEecCCCCChhHhehhhhhHHHHHHHHHHHHHHHH---------------------------------------------
Confidence            99998888999999999999999999988775543                                             


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHH
Q 009655          412 PLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSD--VTFYWVVLV  477 (529)
Q Consensus       412 PLa~agwinLvltafNLLPigpLDGGrIlrAllgrr~a~~i~~~~~~lLGl~~l~~~--~~l~W~lli  477 (529)
                       +..++|+|+++++|||+|++|||||||+++++++|.+.++++++.+++|+.++.++  .+++|+.++
T Consensus       115 -~~~~~~~nl~l~~fNLLPi~PLDGGril~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  181 (183)
T cd06160         115 -LAVAGWVGLLVTALNLLPVGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLL  181 (183)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCCcChHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             12368999999999999999999999999999999999999999899998888765  455665443

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.94  E-value=2.2e-25  Score=219.15  Aligned_cols=134  Identities=30%  Similarity=0.390  Sum_probs=112.0

Q ss_pred             cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeeeeeEEeeccccCCcccceeeEecchhhHH
Q 009655          277 DNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF  356 (529)
Q Consensus       277 ~~~~~l~~glp~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGtFGAvi~~~s~~~~RkalfdIAiAGPLAg~  356 (529)
                      .+...+..|+.++++++.++++||+||+++||++|+++.      .+.+.+||+++++++...++++++.|++|||++|+
T Consensus        37 ~~~~~~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~~IalAGPl~Nl  110 (227)
T cd06164          37 LGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIPVR------SITLFLFGGVARLEREPETPGQEFVIAIAGPLVSL  110 (227)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEC------eEEEEeeeEEEEecCCCCCHHHHhhhhhhHHHHHH
Confidence            455678889999999999999999999999999999998      77888899999999888889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCCh
Q 009655          357 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDG  436 (529)
Q Consensus       357 llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvltafNLLPigpLDG  436 (529)
                      +++++++++....+...            .+.                    ....+.+.+|+|+++++|||+|++||||
T Consensus       111 lla~i~~~l~~~~~~~~------------~~~--------------------~~~~~~~~~~~Nl~l~~fNLlP~~PLDG  158 (227)
T cd06164         111 VLALLFLLLSLALPGSG------------AGP--------------------LGVLLGYLALINLLLAVFNLLPAFPLDG  158 (227)
T ss_pred             HHHHHHHHHHHHhcccc------------chH--------------------HHHHHHHHHHHHHHHHHHhCcCCCCCCh
Confidence            99998877665432110            000                    0112446789999999999999999999


Q ss_pred             HHHHHHHhhhhH
Q 009655          437 GRIAFALWGRKA  448 (529)
Q Consensus       437 GrIlrAllgrr~  448 (529)
                      |||+++++.++.
T Consensus       159 gril~~ll~~~~  170 (227)
T cd06164         159 GRVLRALLWRRT  170 (227)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.91  E-value=1.1e-23  Score=203.96  Aligned_cols=129  Identities=29%  Similarity=0.433  Sum_probs=108.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeeeeeEEeeccccCCcccceeeEecchhhHHHHH
Q 009655          280 NLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG  359 (529)
Q Consensus       280 ~~l~~glp~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGtFGAvi~~~s~~~~RkalfdIAiAGPLAg~llA  359 (529)
                      ..+..++.+++.++.++++||+||+++||++|+++.      .+.+.+||+++++++...+|++++.|++|||++|++++
T Consensus        25 ~~~~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la   98 (208)
T cd06161          25 VAWLLGLLEALLLFLSVLLHELGHALVARRYGIRVR------SITLLPFGGVAELEEEPETPKEEFVIALAGPLVSLLLA   98 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc------ceEEEeeeeeeeeccCCCChhHheeeeeehHHHHHHHH
Confidence            457788999999999999999999999999999998      78888999999998777789999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHH
Q 009655          360 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRI  439 (529)
Q Consensus       360 l~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvltafNLLPigpLDGGrI  439 (529)
                      +++.++....+..              +                    .....+.+.+++|+++++|||+|++|||||||
T Consensus        99 ~~~~~l~~~~~~~--------------~--------------------~~~~~~~~~~~~N~~l~lfNLlPi~pLDGg~i  144 (208)
T cd06161          99 GLFYLLYLLLPGG--------------G--------------------PLSSLLEFLAQVNLILGLFNLLPALPLDGGRV  144 (208)
T ss_pred             HHHHHHHHHcccc--------------h--------------------HHHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            8887665432210              0                    00123456789999999999999999999999


Q ss_pred             HHHHhhhhH
Q 009655          440 AFALWGRKA  448 (529)
Q Consensus       440 lrAllgrr~  448 (529)
                      +++++.++.
T Consensus       145 l~~ll~~~~  153 (208)
T cd06161         145 LRALLWRRT  153 (208)
T ss_pred             HHHHHHHhc
Confidence            999987664

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.86  E-value=6.7e-21  Score=182.19  Aligned_cols=112  Identities=33%  Similarity=0.458  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc---cc------------ceeeeeeeEEeeccccC------------
Q 009655          287 PGALVTALVIGVHELGHILAAKSTGVELGVPYFV---PS------------WQIGSFGAITRIRNIVS------------  339 (529)
Q Consensus       287 p~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FI---P~------------i~LGtFGAvi~~~s~~~------------  339 (529)
                      .+.+++.+++++||+||+++||++|+++.. +.|   |.            +.+.++|+++++++..+            
T Consensus         3 ~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~-f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~   81 (182)
T cd06163           3 AFILVLGILIFVHELGHFLVAKLFGVKVEE-FSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRS   81 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeE-eeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHH
Confidence            356677789999999999999999999872 111   21            34568999998864311            


Q ss_pred             ----CcccceeeEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHH
Q 009655          340 ----KREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVI  415 (529)
Q Consensus       340 ----~RkalfdIAiAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~  415 (529)
                          ++++++.|++|||++|+++|++++++.                                              +.+
T Consensus        82 f~~~~~~~ri~V~lAGP~~NlilA~i~~~~~----------------------------------------------~~~  115 (182)
T cd06163          82 FNSKPVWQRILIVFAGPLANFLLAIVLFAVL----------------------------------------------LSF  115 (182)
T ss_pred             HccCCcchhhhhhhhHHHHHHHHHHHHHHHH----------------------------------------------HHH
Confidence                467899999999999999998764321                                              124


Q ss_pred             HHHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 009655          416 WAWAGLLINAINSIPAGELDGGRIAFALWG  445 (529)
Q Consensus       416 agwinLvltafNLLPigpLDGGrIlrAllg  445 (529)
                      ..++|+.+++|||+|++||||||++++++.
T Consensus       116 ~~~~n~~l~~fNLlPippLDGg~il~~~~~  145 (182)
T cd06163         116 LALLSINLGILNLLPIPALDGGHLLFLLIE  145 (182)
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            678999999999999999999999999985

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=7.2e-21  Score=178.53  Aligned_cols=139  Identities=28%  Similarity=0.328  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccc----ccccc-------cceeeeeeeEEeeccccC-----CcccceeeEec
Q 009655          287 PGALVTALVIGVHELGHILAAKSTGVELGV----PYFVP-------SWQIGSFGAITRIRNIVS-----KREDLLKVAAA  350 (529)
Q Consensus       287 p~aL~L~~iL~iHElGH~laAr~~Gvk~s~----P~FIP-------~i~LGtFGAvi~~~s~~~-----~RkalfdIAiA  350 (529)
                      .+.+++++++.+||+||+++||++|+++..    ..+.|       .+.+.++|+++++.+...     +|++++.|++|
T Consensus         2 ~~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~~~~~~~~~~~i~la   81 (180)
T cd05709           2 AFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRAFKKPRWQRLLVALA   81 (180)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhhhccchhhhhhhhhh
Confidence            356778889999999999999999998741    11111       122345699998877554     48999999999


Q ss_pred             chhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcC
Q 009655          351 GPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP  430 (529)
Q Consensus       351 GPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvltafNLLP  430 (529)
                      ||++|++++++++++..........    ..   ..+                 ......+.+.+++|+|+.+++|||+|
T Consensus        82 GPl~nllla~i~~~~~~~~~~~~~~----~~---~~~-----------------~~~~~~~~l~~~~~~n~~l~~fNLlP  137 (180)
T cd05709          82 GPLANLLLALLLLLLLLLLGGLPPA----PV---GQA-----------------ASSGLANLLAFLALINLNLAVFNLLP  137 (180)
T ss_pred             hHHHHHHHHHHHHHHHHHHccCCcc----ch---hhh-----------------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999988776543221100    00   000                 00111245667899999999999999


Q ss_pred             CCCCChHHHHHHHhhhhHH
Q 009655          431 AGELDGGRIAFALWGRKAS  449 (529)
Q Consensus       431 igpLDGGrIlrAllgrr~a  449 (529)
                      ++||||||++++++.++..
T Consensus       138 i~plDGg~il~~~l~~~~~  156 (180)
T cd05709         138 IPPLDGGRILRALLEAIRG  156 (180)
T ss_pred             CCCCChHHHHHHHHhHHHH
Confidence            9999999999999887754

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.82  E-value=3.7e-19  Score=178.98  Aligned_cols=119  Identities=26%  Similarity=0.325  Sum_probs=93.5

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeeeeeEEeecccc---CCcccceeeEecchhhHHHH
Q 009655          282 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIV---SKREDLLKVAAAGPLAGFSL  358 (529)
Q Consensus       282 l~~glp~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGtFGAvi~~~s~~---~~RkalfdIAiAGPLAg~ll  358 (529)
                      +...+.+.++++.++.+||+||+++||++|+++..--+  .+.+.++||++++++..   .++++++.|++|||++|+++
T Consensus       107 ~i~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl--~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvl  184 (263)
T cd06159         107 FIPLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGL--LLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVV  184 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhH--HHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHH
Confidence            34566677788899999999999999999999983111  01123588999886544   46789999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHH
Q 009655          359 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGR  438 (529)
Q Consensus       359 Al~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvltafNLLPigpLDGGr  438 (529)
                      |++++++..                                             +.+..|+|+.+++|||+|+.||||||
T Consensus       185 a~i~~~l~~---------------------------------------------l~~~~~~N~~l~lFNLlP~~PLDGg~  219 (263)
T cd06159         185 ALIAFALFF---------------------------------------------LYWIFWINFLLGLFNCLPAIPLDGGH  219 (263)
T ss_pred             HHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhCCCCCCCChHH
Confidence            987654321                                             12457899999999999999999999


Q ss_pred             HHHHHhhhh
Q 009655          439 IAFALWGRK  447 (529)
Q Consensus       439 IlrAllgrr  447 (529)
                      ++++++..+
T Consensus       220 il~~ll~~~  228 (263)
T cd06159         220 VFRDLLEAL  228 (263)
T ss_pred             HHHHHHHHH
Confidence            999997554

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.79  E-value=4.2e-19  Score=167.45  Aligned_cols=127  Identities=28%  Similarity=0.345  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccccccc----cc------c----ceeeeeeeE---------------Eeecccc
Q 009655          288 GALVTALVIGVHELGHILAAKSTGVELGVPYF----VP------S----WQIGSFGAI---------------TRIRNIV  338 (529)
Q Consensus       288 ~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~F----IP------~----i~LGtFGAv---------------i~~~s~~  338 (529)
                      +.++++.++++||+||+++|+++|+|+.....    .+      .    +.+.++|++               ...+...
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            35677889999999999999999999975421    01      0    011122322               2222234


Q ss_pred             CCcccceeeEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHH
Q 009655          339 SKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW  418 (529)
Q Consensus       339 ~~RkalfdIAiAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agw  418 (529)
                      .+|++.+.|++|||++|++++++++.+.........                              ......+.+.+++|
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~  131 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGSVG------------------------------WSSFFAEFLFFFAW  131 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS-------------------------------------EETTEEHHHHHHH
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhcccc------------------------------ccHHHHHHHHHHHH
Confidence            567889999999999999999888766543221000                              01122356678899


Q ss_pred             HHHHHHHHhhcCCCCCChHHHHHHHh
Q 009655          419 AGLLINAINSIPAGELDGGRIAFALW  444 (529)
Q Consensus       419 inLvltafNLLPigpLDGGrIlrAll  444 (529)
                      +|+.++++||+|++||||||++++++
T Consensus       132 ~n~~l~~~NllPi~~lDG~~il~~l~  157 (192)
T PF02163_consen  132 LNFILALFNLLPIPPLDGGRILRALL  157 (192)
T ss_dssp             HHHHHHHHTTSSSSSSHHHHHHHHHH
T ss_pred             HHHHHhhhhcccCCcCCHHHHHHHHH
Confidence            99999999999999999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=99.76  E-value=8.8e-18  Score=170.09  Aligned_cols=114  Identities=25%  Similarity=0.226  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeee----eeEEeeccc---cCCcccceeeEecchhhHHHHHH
Q 009655          288 GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSF----GAITRIRNI---VSKREDLLKVAAAGPLAGFSLGF  360 (529)
Q Consensus       288 ~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGtF----GAvi~~~s~---~~~RkalfdIAiAGPLAg~llAl  360 (529)
                      +.++++.++.+||+||+++|+++|+++.      .+.+..|    ||+++..+.   ..++++++.|+.|||++|+++|+
T Consensus       130 ~l~al~isvvvHElgHal~A~~~gi~V~------~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~  203 (277)
T cd06162         130 YFTALLISGVVHEMGHGVAAVREQVRVN------GFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGL  203 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeec------eEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHHHH
Confidence            3466788999999999999999999998      5544444    899988433   23567799999999999999998


Q ss_pred             HHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHH
Q 009655          361 VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA  440 (529)
Q Consensus       361 ~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvltafNLLPigpLDGGrIl  440 (529)
                      +++++.+.                                          .-+.+..++|+.+++|||+|+.|||||||+
T Consensus       204 i~~~l~~~------------------------------------------~~l~~la~iNl~lavfNLlP~~pLDGg~il  241 (277)
T cd06162         204 VGYLLLIE------------------------------------------TFLKYLISLSGALAVINAVPCFALDGQWIL  241 (277)
T ss_pred             HHHHHHHH------------------------------------------HHHHHHHHHHHHHHHhhcCCCCCCChHHHH
Confidence            77653210                                          012346789999999999999999999999


Q ss_pred             HHHhhhhHH
Q 009655          441 FALWGRKAS  449 (529)
Q Consensus       441 rAllgrr~a  449 (529)
                      ++++.++..
T Consensus       242 ~~ll~~~~~  250 (277)
T cd06162         242 STFLEATLV  250 (277)
T ss_pred             HHHHHHHhC
Confidence            999766543

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.76  E-value=3.5e-18  Score=163.01  Aligned_cols=134  Identities=25%  Similarity=0.295  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccc----ccccc-------------cceeeeeeeEEeec-----cccCCcccce
Q 009655          288 GALVTALVIGVHELGHILAAKSTGVELGV----PYFVP-------------SWQIGSFGAITRIR-----NIVSKREDLL  345 (529)
Q Consensus       288 ~aL~L~~iL~iHElGH~laAr~~Gvk~s~----P~FIP-------------~i~LGtFGAvi~~~-----s~~~~Rkalf  345 (529)
                      ..++++.++..||+||+++|+++|+++..    -.+-|             ...+.. +++.+..     ...++|++++
T Consensus         4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~-~G~a~p~~~~~~~~~~~r~~~~   82 (181)
T cd06158           4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFL-FGWAKPVPVNPRNFKNPRRGML   82 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhC-eEEecccccChHhhcccHhhHh
Confidence            45567789999999999999999999862    11112             111112 3343322     2234578899


Q ss_pred             eeEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHH
Q 009655          346 KVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINA  425 (529)
Q Consensus       346 dIAiAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvlta  425 (529)
                      .|++|||++|+++++++.++........+         ...+.+                    ...+....++|+.+++
T Consensus        83 ~valAGP~~n~~la~i~~~~~~~~~~~~~---------~~~~~l--------------------~~~~~~~~~~Ni~l~l  133 (181)
T cd06158          83 LVSLAGPLSNLLLALLFALLLRLLPAFGG---------VVASFL--------------------FLMLAYGVLINLVLAV  133 (181)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhccccc---------hhhHHH--------------------HHHHHHHHHHHHHHHH
Confidence            99999999999999887655443221100         000110                    1123456789999999


Q ss_pred             HhhcCCCCCChHHHHHHHhhhhHHHH
Q 009655          426 INSIPAGELDGGRIAFALWGRKASTR  451 (529)
Q Consensus       426 fNLLPigpLDGGrIlrAllgrr~a~~  451 (529)
                      |||+|++|||||||+++++.++....
T Consensus       134 fNLlPipPLDG~~il~~~l~~~~~~~  159 (181)
T cd06158         134 FNLLPIPPLDGSKILAALLPRRLAEA  159 (181)
T ss_pred             HHhCCCCCCChHHHHHHHcchhHHHH
Confidence            99999999999999999998876543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>TIGR00054 RIP metalloprotease RseP

Probab=99.55  E-value=9.4e-14  Score=147.65  Aligned_cols=79  Identities=27%  Similarity=0.463  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccccccc---c------------cceeeeeeeEEeeccc---------------
Q 009655          288 GALVTALVIGVHELGHILAAKSTGVELGVPYFV---P------------SWQIGSFGAITRIRNI---------------  337 (529)
Q Consensus       288 ~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FI---P------------~i~LGtFGAvi~~~s~---------------  337 (529)
                      +.+.+.+++++||+||+++||++|+++.. |.|   |            .+.+.++|+++++...               
T Consensus         9 ~~~~~~~~v~~HE~gH~~~a~~~g~~v~~-FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~~   87 (420)
T TIGR00054         9 SILALAVLIFVHELGHFLAARLCGIKVER-FSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGDL   87 (420)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHcCCEEEE-EEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhhh
Confidence            35567778999999999999999999862 111   2            1346789999998411               


Q ss_pred             --cCCcccceeeEecchhhHHHHHHHHHHHHh
Q 009655          338 --VSKREDLLKVAAAGPLAGFSLGFVLFLVGF  367 (529)
Q Consensus       338 --~~~RkalfdIAiAGPLAg~llAl~ll~iGl  367 (529)
                        ..+.++++.|++|||++|+++|++++++.+
T Consensus        88 f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~  119 (420)
T TIGR00054        88 FNNKSVFQKAIIIFAGPLANFIFAIFVYIFIS  119 (420)
T ss_pred             hccCCHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence              035678899999999999999998876544

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.52  E-value=1.3e-13  Score=147.60  Aligned_cols=83  Identities=22%  Similarity=0.371  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc---cc-------------ceeeeeeeEEeeccc----------
Q 009655          284 NGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFV---PS-------------WQIGSFGAITRIRNI----------  337 (529)
Q Consensus       284 ~glp~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FI---P~-------------i~LGtFGAvi~~~s~----------  337 (529)
                      ..+.+.+++..++++||+||+++||++|+++.. |.|   |.             +-+.++|++.+|...          
T Consensus         6 ~i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~-FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~   84 (449)
T PRK10779          6 NLAAFIVALGVLITVHEFGHFWVARRCGVRVER-FSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELR   84 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE-EEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhh
Confidence            344466677778999999999999999999983 111   21             235678999987532          


Q ss_pred             -----cCCcccceeeEecchhhHHHHHHHHHHHHh
Q 009655          338 -----VSKREDLLKVAAAGPLAGFSLGFVLFLVGF  367 (529)
Q Consensus       338 -----~~~RkalfdIAiAGPLAg~llAl~ll~iGl  367 (529)
                           ..+.++++.|.+|||++|+++|++++.+-+
T Consensus        85 ~~~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~  119 (449)
T PRK10779         85 HHAFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVF  119 (449)
T ss_pred             hhhhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence                 123578899999999999999988865544

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=99.34  E-value=1.7e-11  Score=120.88  Aligned_cols=131  Identities=24%  Similarity=0.307  Sum_probs=86.1

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeeeeeEEeeccccCCcccceeeEec--------ch
Q 009655          281 LLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAA--------GP  352 (529)
Q Consensus       281 ~l~~glp~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGtFGAvi~~~s~~~~RkalfdIAiA--------GP  352 (529)
                      .+.++....++++..+..||+||...++++|++..      .+.++.+|++..++..+.+.+..+.+..+        ||
T Consensus        40 ~~~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~------~~~i~~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~algp  113 (230)
T COG1994          40 SLGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLL------LALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGP  113 (230)
T ss_pred             HHhhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHH------HHHHHhccceeeecCcCcCHHHHhhhhccchhHHHHHHH
Confidence            34555555555777999999999999999999987      54444477777777666565555555544        55


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCC
Q 009655          353 LAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAG  432 (529)
Q Consensus       353 LAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvltafNLLPig  432 (529)
                      +.|+++++++ ...  .+..           ...+                    +...-+...+.+|+++++|||+|++
T Consensus       114 l~ni~la~~~-~~~--~~~~-----------~~~~--------------------~~~~~~~~la~~Nl~L~lFNLiPi~  159 (230)
T COG1994         114 LTNIALAVLG-LLA--LSLF-----------LYHS--------------------VLFAFLAALALVNLVLALFNLLPIP  159 (230)
T ss_pred             HHHHHHHHHH-HHh--hccc-----------ccch--------------------hHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            5555544433 000  0000           0000                    0011223467799999999999999


Q ss_pred             CCChHHHHHHHhhhhHHHH
Q 009655          433 ELDGGRIAFALWGRKASTR  451 (529)
Q Consensus       433 pLDGGrIlrAllgrr~a~~  451 (529)
                      ||||||++|+++.++...+
T Consensus       160 PLDGg~vlr~~~~~~~~~~  178 (230)
T COG1994         160 PLDGGRVLRALLPRRYGAA  178 (230)
T ss_pred             CCChHHHHHHHccHHHHHH
Confidence            9999999999988876533

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=98.90  E-value=1.6e-09  Score=111.88  Aligned_cols=242  Identities=13%  Similarity=0.048  Sum_probs=138.5

Q ss_pred             cccccceeeeccccccCceEEEEeccCCchHHHHHHHHHHHHhhhCCceEEEEEecCCCCCcEEEEEeCCCCCCCCCChh
Q 009655          165 QVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVP  244 (529)
Q Consensus       165 ~~Fg~dtF~~t~~~~~~~gvi~rGnLR~~~e~~y~~l~~~l~~~fGd~y~lfl~~~~~~~kPv~~vvP~~~~~p~~~~~~  244 (529)
                      .+++.++|+.....+ ...+++.|.+.......+..+...+  ..|..+         ...|+..   +  ..   ..  
T Consensus        82 ~~~~~~~f~~~~~~~-~~~~~~~Gp~~n~i~~~~~~~~~~~--~~G~~~---------~~~~~~~---~--v~---~~--  139 (375)
T COG0750          82 PEPRPRAFNAKSVWQ-RIAIVFAGPLFNFILAIVLFVVLFF--VIGLVP---------VASPVVG---E--VA---PK--  139 (375)
T ss_pred             cCcchhhhhcccccc-hhheeechHHHHHHHHHHHHHhhhe--Eeeeee---------eccCeee---e--cC---CC--
Confidence            588899999999999 9999999999988766655544433  223111         1122211   0  00   00  


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHh------hHHHHHHHHHHHHHH--HHHHHHHHHHcCCcccc
Q 009655          245 EWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTN------GLPGALVTALVIGVH--ELGHILAAKSTGVELGV  316 (529)
Q Consensus       245 ~~~~~~ll~l~Tl~Tt~~~~~~~L~~~~~~~~~~~~~l~~------glp~aL~L~~iL~iH--ElGH~laAr~~Gvk~s~  316 (529)
                               ..+..+.+..|...+..|- +...+++....      +.++.  .+.+.+.|  +..|+.+++.++.....
T Consensus       140 ---------s~a~~a~l~~Gd~iv~~~~-~~i~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~  207 (375)
T COG0750         140 ---------SAAALAGLRPGDRIVAVDG-EKVASWDDVRRLLVAAAGDVFN--LLTILVIRLDGEAHAVAAEIIKSLGLT  207 (375)
T ss_pred             ---------CHHHHcCCCCCCEEEeECC-EEccCHHHHHHHHHhccCCccc--ceEEEEEeccceeeeccccceeeEeee
Confidence                     0111223334433322221 11222322221      22222  35677788  99999999988888888


Q ss_pred             ccccccceeeeeeeEEe--eccccCC-----cccceeeEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhh
Q 009655          317 PYFVPSWQIGSFGAITR--IRNIVSK-----REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL  389 (529)
Q Consensus       317 P~FIP~i~LGtFGAvi~--~~s~~~~-----RkalfdIAiAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L  389 (529)
                      |+++| ...+..++.++  ..+..++     ++...++..+++++. .+.-...++++.+....    ......+..+.+
T Consensus       208 P~~~~-~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~~-~v~~~~~~~~~~~~~l~----~~~~~~~~~~~l  281 (375)
T COG0750         208 PVVIP-LKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVGL-AVEKTGRLVKLTLKMLK----KLITGDLSLKNL  281 (375)
T ss_pred             cceec-cCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHHH-HHHHHHHHHHHHHHHHH----Hheecccccccc
Confidence            98877 45555555443  3344444     788999999999994 33333333433321000    000011122222


Q ss_pred             hhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhhhH
Q 009655          390 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKA  448 (529)
Q Consensus       390 ~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvltafNLLPigpLDGGrIlrAllgrr~  448 (529)
                      .+.+.....+....  .....|++.+++|+|+.++++||+|+++|||||++++++.+..
T Consensus       282 ~Gpi~i~~~~~~~~--~~~~~~~l~~~~~lsi~lg~lNllP~p~LDGG~i~~~~~e~~~  338 (375)
T COG0750         282 SGPIGIAKIAGAAA--SLGLINLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEALR  338 (375)
T ss_pred             cCceehhhhhhHHH--hhHHHHHHHHHHHHHHHHHHHhccCCCccCccHHHHHHHHHHh
Confidence            22221111111100  1235689999999999999999999999999999999986654

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=97.40  E-value=0.00053  Score=66.83  Aligned_cols=65  Identities=31%  Similarity=0.274  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCccccccccccceeee-eeeEEeeccccCCcccceeeEecchhhHHHHHHHHHHHH
Q 009655          294 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGS-FGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  366 (529)
Q Consensus       294 ~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGt-FGAvi~~~s~~~~RkalfdIAiAGPLAg~llAl~ll~iG  366 (529)
                      ....+||+||+++|...|-++.      .+.+.+ -++.+..+.  +++...+.++.|||++..+++..++..+
T Consensus        23 l~t~~HE~gHal~a~l~G~~v~------~i~l~~~~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   23 LVTFVHELGHALAALLTGGRVK------GIVLFPDGSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc------eEEEEeCCCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            4588999999999999999998      665554 466777766  6666789999999999999887776655

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=96.16  E-value=0.016  Score=60.19  Aligned_cols=82  Identities=27%  Similarity=0.385  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--cc-------c------ceeeeeeeEEeeccccC-----------
Q 009655          286 LPGALVTALVIGVHELGHILAAKSTGVELGVPYF--VP-------S------WQIGSFGAITRIRNIVS-----------  339 (529)
Q Consensus       286 lp~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~F--IP-------~------i~LGtFGAvi~~~s~~~-----------  339 (529)
                      +.+.+.+...+.+||+||+|.||++|+++.....  -|       .      +...++|++.++.....           
T Consensus         6 i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv~~~~~~~~~~~~~~~~~~   85 (375)
T COG0750           6 IAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYVKMLGEDAEEVVLKGPEPR   85 (375)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceEEEecCccccccccccCcc
Confidence            3345566678899999999999999999984211  12       0      12335666655532211           


Q ss_pred             -------CcccceeeEecchhhHHHHHHHHHHHHh
Q 009655          340 -------KREDLLKVAAAGPLAGFSLGFVLFLVGF  367 (529)
Q Consensus       340 -------~RkalfdIAiAGPLAg~llAl~ll~iGl  367 (529)
                             +-...+.+.+|||+.|++.++...+...
T Consensus        86 ~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          86 PRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             hhhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence                   1123678999999999998877766554

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.0069  Score=64.96  Aligned_cols=82  Identities=28%  Similarity=0.313  Sum_probs=54.0

Q ss_pred             HhhHHHH-HHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeeeeeEEeeccc----cCCcccceeeEecchhhHHH
Q 009655          283 TNGLPGA-LVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNI----VSKREDLLKVAAAGPLAGFS  357 (529)
Q Consensus       283 ~~glp~a-L~L~~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGtFGAvi~~~s~----~~~RkalfdIAiAGPLAg~l  357 (529)
                      +.+++|. ..++..+.+||+||+|||.+.|+++.  +|=-++..---||++.+...    .+. -....|.-||-.-||+
T Consensus       120 l~~I~yf~t~lvi~~vvHElGHalAA~segV~vn--gfgIfi~aiyPgafvdl~~dhLqsl~~-fr~LrIfcAGIWHNfv  196 (484)
T KOG2921|consen  120 LSGIAYFLTSLVITVVVHELGHALAAASEGVQVN--GFGIFIAAIYPGAFVDLDNDHLQSLPS-FRALRIFCAGIWHNFV  196 (484)
T ss_pred             cccchhhhhhHHHHHHHHHhhHHHHHHhcCceee--eeEEEEEEEcCchhhhhhhhHHhhcch-HHHHHHHhhhHHHHHH
Confidence            3445544 45667889999999999999999998  21001111123667665432    122 2346899999999999


Q ss_pred             HHHHHHHHHh
Q 009655          358 LGFVLFLVGF  367 (529)
Q Consensus       358 lAl~ll~iGl  367 (529)
                      +|+++.+.-.
T Consensus       197 fallc~lal~  206 (484)
T KOG2921|consen  197 FALLCVLALF  206 (484)
T ss_pred             HHHHHHHHHH
Confidence            9988765544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	529
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	9e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Length = 224

 Score = 78.4 bits (193), Expect = 9e-17
 Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 46/212 (21%)

Query: 272 LLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI 331
           ++     +N         ++  + + +HELGH   AK  GV++     +P       G +
Sbjct: 27  VIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGV 80

Query: 332 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAG 391
             +  I  + E  L++  AGPL  F +G VL +V   F  +     +             
Sbjct: 81  AMMDKIPKEGE--LRIGIAGPLVSFIIGIVLLIVSQFFDININGYPL------------- 125

Query: 392 GFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRK 447
                                L   +   L++   N IPA  +DGGRI  A+    +G  
Sbjct: 126 ---------------------LYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKKYGYL 164

Query: 448 ASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFF 479
            ST++       L L  L   +    ++L+  
Sbjct: 165 KSTKIAANIGKSLALIMLLFGLLSMNIILILV 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 70/449 (15%), Positives = 121/449 (26%), Gaps = 124/449 (27%)

Query: 123 DTKGGVQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEG 182
           D + G       ++ S      V   D    +      IL  +    D   ++       
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEI--DHIIMSKDAVSGT 64

Query: 183 GVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLL--VNPEDDKPVAVVVPRKTLQPET 240
             LF   L  +  +  +K    ++      YK FL+  +  E  +P        T     
Sbjct: 65  LRLF-WTLLSKQEEMVQKF---VEEVLRINYK-FLMSPIKTEQRQP-----SMMTRMYIE 114

Query: 241 TAVPEWFAAGAFGLVTVFTLLLRNVP------ALQSNLLSTFDNLNLLTNGLPGALVTAL 294
                +          VF     NV        L+  LL      N+L +G+ G+  T +
Sbjct: 115 QRDRLY------NDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 295 VIGVHELGHILAAKSTGVELGVPY--------------------------FVPSWQIGSF 328
            + V          S  V+  + +                            P+W   S 
Sbjct: 167 ALDV--------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 329 GAIT----------RIRNIVSKR---EDLL---KVAAAGPLAGFSLG-FVLFL-----VG 366
            +             +R ++  +     LL    V  A     F+L   +L       V 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 367 FIFPPSDGIGIVVD--ASVFHESFLAGGFAKLLLGDVLKDGTP---ISVNPLVIWAWAGL 421
                +    I +D  +       +     K L  D      P   ++ NP  +      
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRL------ 330

Query: 422 LINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT--FYWVVLVFF 479
                 SI A  +  G   +  W      +LT  +I+   L+ L        +  + VF 
Sbjct: 331 ------SIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLSVF- 381

Query: 480 LQRGPIAPLSEEITDPDDKYIALGVLVLF 508
                          P   +I   +L L 
Sbjct: 382 ---------------PPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	529
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.91

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=2.3e-24  Score=210.06  Aligned_cols=154  Identities=26%  Similarity=0.389  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeeeeeEEeeccccCCcccceeeEecchhhHHHHHHHHHHHH
Q 009655          287 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  366 (529)
Q Consensus       287 p~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGtFGAvi~~~s~~~~RkalfdIAiAGPLAg~llAl~ll~iG  366 (529)
                      .++++++.++++||+||+++||++|+++..      +.+.+||+++++++.  .|+++++|++|||++|++++++++.+.
T Consensus        42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~------i~l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~~~~~~  113 (224)
T 3b4r_A           42 VLFILLFVSVVLHELGHSYVAKKYGVKIEK------ILLLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIVLLIVS  113 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------EEECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccc------EEEEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999999984      455568999988763  358999999999999999998876654


Q ss_pred             hhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 009655          367 FIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR  446 (529)
Q Consensus       367 l~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvltafNLLPigpLDGGrIlrAllgr  446 (529)
                      ...+..             .                    .. ...+.+++|+|+++++|||+|++|||||||+++++++
T Consensus       114 ~~~~~~-------------~--------------------~~-~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~  159 (224)
T 3b4r_A          114 QFFDIN-------------I--------------------NG-YPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK  159 (224)
T ss_dssp             TTCCCE-------------E--------------------TT-EEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred             HHccCc-------------c--------------------hH-HHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence            322100             0                    00 1123457999999999999999999999999999887


Q ss_pred             hHH--------HHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHh
Q 009655          447 KAS--------TRLTGVSIVLLGLSSLF--SDVTFYWVVLVFFLQR  482 (529)
Q Consensus       447 r~a--------~~i~~~~~~lLGl~~l~--~~~~l~W~llilfl~r  482 (529)
                      +..        .+++.++.+++.+.++.  +.+..+|++++++..+
T Consensus       160 ~~~~~~a~~~~~~~g~~i~~~l~~~g~~~~~~~l~~i~~fl~~~a~  205 (224)
T 3b4r_A          160 KYGYLKSTKIAANIGKSLALIMLLFGLLSMNIILILVSLFVYFGAE  205 (224)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence            542        22344444444444443  2223445555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00