Citrus Sinensis ID: 009660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
Protein Sequence
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEccEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHccccccccccHHHHEEHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEEEEEcccccccEEcccccccEEEEEEcEEEEEEEcccccccccccccccHHHcccccccccccccccccccccccccccccHHccccccHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccHHHEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHcccc
Coil and Loop (DISEMBL)
mnftttfrgnlsllphcssccdirfqpilaslhvtrpvrcrlgnfssykvsrKKRELICRVtdtqtepdsnndkekevhdgqenqpatasdqeddksqpdsqldsqpqvenqingndvadtkggvqqddgngevasgsplpgvkpqqldeyiripkETIDILkdqvfgfdtffvtnqepyeggvlfkgnlrgqAAKTYEKISTRMKNKFGDQYKLFLLvnpeddkpvavvvprktlqpettavpewfaaGAFGLVTVFTLLLRNVPALQSNLlstfdnlnlltnglpGALVTALVIGVHELGHILAAKStgvelgvpyfvpswqigsfgaITRIRNIVSKREDLLKVaaagplagfSLGFVLFLVGfifppsdgigivVDASVFHESFLAGGFAKLLLgdvlkdgtpisvnPLVIWAWAGLLINAinsipageldggRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLqrgpiaplseeitdpddkyIALGVLVLFLGLLvclpypfpfsdqavsnf
Flexible Loop (DISEMBL)
mnftttfrgnlsllPHCSSCCDIRFQPILASLhvtrpvrcrlgnfssykvsrkkrelicrvtdtqtepdsnndkekevhdgqenqpatasdqeddksQPDSQLDSQPQVENQINGNDVADTKGGVQQDDGNgevasgsplpgvkpqqLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPyeggvlfkgnlrgQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPfpfsdqavsnf
Low Complexity Region (SEG)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEddksqpdsqldsqpqVENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAgfslgfvlflvgfifPPSDGIGIVVDASVFHESflaggfaklllgDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTgvsivllglsslfsDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAlgvlvlflgllvclPYPFPFSDQAVSNF
Disordered region (IsUnstruct)
****TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRV***************************************************************************************DEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPF********
Disordered Region (DISOPRED)
***TTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRP**C************************************************************************************************************************ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVV**********AVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Disordered Region (DISEMBL)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTDT********************************************VENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Disordered Region (DISPRO)
********GNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTD*******************************************************************************VKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
255571887	525	metalloendopeptidase, putative [Ricinus	0.984	0.992	0.741	0.0
359486422	543	PREDICTED: uncharacterized protein LOC10	0.988	0.963	0.726	0.0
42573279	527	ethylene-dependent gravitropism-deficien	0.971	0.975	0.692	0.0
334187443	524	ethylene-dependent gravitropism-deficien	0.956	0.965	0.687	0.0
297810677	558	peptidase M50 family protein [Arabidopsi	0.971	0.921	0.666	0.0
15239226	556	ethylene-dependent gravitropism-deficien	0.971	0.924	0.655	0.0
356501144	523	PREDICTED: uncharacterized protein LOC10	0.962	0.973	0.702	0.0
356551482	520	PREDICTED: uncharacterized protein LOC10	0.956	0.973	0.698	0.0
242052155	545	hypothetical protein SORBIDRAFT_03g00653	0.896	0.869	0.665	0.0
218187492	545	hypothetical protein OsI_00340 [Oryza sa	0.954	0.926	0.642	0.0

>gi|255571887|ref|XP_002526886.1| metalloendopeptidase, putative [Ricinus communis] gi|223533785|gb|EEF35517.1| metalloendopeptidase, putative [Ricinus communis]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/533 (74%), Positives = 446/533 (83%), Gaps = 12/533 (2%)

Query: 1   MNFTTTFRGNLS--LLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSR--KKRE 56
           M+    FRGN +  LLP  S C          S+   R +RCRL +F  Y VSR  +KR 
Sbjct: 1   MSLIAAFRGNFTPLLLPLSSHCSSCT---SSVSVTSQRKLRCRLRDFKLYHVSRFVEKRV 57

Query: 57  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 116
           ++CRVT+T+TEPD NNDKEKEVH+G E  P T S       Q  S+ DSQP+V NQI+ N
Sbjct: 58  IVCRVTETETEPDGNNDKEKEVHEGGETPPTTGS-----AGQVSSESDSQPRVVNQISNN 112

Query: 117 DVADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTN 176
           D         QD     VASGSPLPGVK QQLDE  RIPK TIDILKDQVFGFDTFFVT+
Sbjct: 113 DEQTNSESSTQDADAENVASGSPLPGVKTQQLDESFRIPKGTIDILKDQVFGFDTFFVTS 172

Query: 177 QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTL 236
           QEPYEGGVLFKGNLRG+AAK+YEK++ RM+NKFGD+Y+LFLLVNPEDD+PVAVVVPRKTL
Sbjct: 173 QEPYEGGVLFKGNLRGKAAKSYEKLTNRMQNKFGDEYRLFLLVNPEDDRPVAVVVPRKTL 232

Query: 237 QPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVI 296
           QPETTAVPEWFAAGAFGLVT+FTLLLRNVPALQSNLLSTFDNL LL +GL GAL+TAL++
Sbjct: 233 QPETTAVPEWFAAGAFGLVTIFTLLLRNVPALQSNLLSTFDNLELLKDGLSGALITALIL 292

Query: 297 GVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF 356
           GVHE+GHIL AKS+ V+LGVPYFVPSWQIGSFGAITRI NIV KREDLLKVAAAGPLAGF
Sbjct: 293 GVHEVGHILVAKSSDVKLGVPYFVPSWQIGSFGAITRIVNIVPKREDLLKVAAAGPLAGF 352

Query: 357 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 416
           +LGFVLFLVGF+ PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GTPISVNPLVIW
Sbjct: 353 ALGFVLFLVGFVLPPSDGIGLVVDASVFHESFLAGGIAKLLLGDALKEGTPISVNPLVIW 412

Query: 417 AWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVL 476
           AWAG+LINAINSIPAGELDGGRI FA+WGRKAS R T VSI LLG+S+LF+DV FYWVVL
Sbjct: 413 AWAGMLINAINSIPAGELDGGRILFAIWGRKASARFTAVSIGLLGISALFNDVAFYWVVL 472

Query: 477 VFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 529
           + FLQRGPIAPLSEEITDP++KY++LG+LVL LGLLVCLPYPFPF+D+ +++F
Sbjct: 473 IAFLQRGPIAPLSEEITDPEEKYVSLGILVLLLGLLVCLPYPFPFTDEVLTSF 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486422|ref|XP_002271131.2| PREDICTED: uncharacterized protein LOC100267324 [Vitis vinifera] gi|297736633|emb|CBI25504.3| unnamed protein product [Vitis vinifera]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/549 (72%), Positives = 454/549 (82%), Gaps = 26/549 (4%)

Query: 1   MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSR----KKRE 56
           MNF  TFRGN +   HCSSCCD+RFQP L+S  V R  RCR+ N   ++VSR    ++  
Sbjct: 1   MNFPATFRGNFNPFSHCSSCCDLRFQPFLSSPIVWRQKRCRISNLQVHQVSRLGSRRRPR 60

Query: 57  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQ---- 112
           ++C VT+T+TEP++NND+EK  H+     P+      D   Q D QLDSQP V +Q    
Sbjct: 61  IVCGVTETETEPENNNDEEK-AHENGGMPPSI-----DSTVQNDPQLDSQPLVADQDKDQ 114

Query: 113 ------INGNDVADTKG------GVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETID 160
                 +NG+++ ++        G  QD  N EVASGSPLPGVKPQ LDE IRIPKETID
Sbjct: 115 FVHNAMLNGDNMVNSDNQETEAQGNVQDSENLEVASGSPLPGVKPQVLDESIRIPKETID 174

Query: 161 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVN 220
           ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRG+AAK+YEKI+ RM+++FGD+YKLFLL+N
Sbjct: 175 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGKAAKSYEKITIRMQDRFGDKYKLFLLIN 234

Query: 221 PEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLN 280
           PEDDKPVAVVVPR TLQPETTAVPEWFAAGAFGLVTVFTL LRNVPALQSNLLS FDNLN
Sbjct: 235 PEDDKPVAVVVPRNTLQPETTAVPEWFAAGAFGLVTVFTLFLRNVPALQSNLLSVFDNLN 294

Query: 281 LLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSK 340
           LL +GLPGALVTALV+G HE+ HIL A+STG++LGVPYFVPSWQIGSFGAITRI NIV  
Sbjct: 295 LLMDGLPGALVTALVLGTHEISHILVARSTGIKLGVPYFVPSWQIGSFGAITRILNIVPN 354

Query: 341 REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGD 400
           REDLLKVAAAGP+AGFSLG VL L+GF+ PPSDGIG+VVDASVFHES LAGG AKLLLGD
Sbjct: 355 REDLLKVAAAGPIAGFSLGLVLLLLGFLLPPSDGIGVVVDASVFHESLLAGGIAKLLLGD 414

Query: 401 VLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLL 460
           VLK+GTPISVNPL+IWAWAGLLINAINSIPAGELDGGRI+FA+WGRKAS R T  SI LL
Sbjct: 415 VLKEGTPISVNPLLIWAWAGLLINAINSIPAGELDGGRISFAIWGRKASARFTAASIALL 474

Query: 461 GLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFP 520
           GLSSLF+DV FYWVVL+FFLQRGPIAPLSEEITDP+DKY+ALGV+VL LGLLVCLPYPFP
Sbjct: 475 GLSSLFNDVAFYWVVLIFFLQRGPIAPLSEEITDPEDKYVALGVVVLLLGLLVCLPYPFP 534

Query: 521 FSDQAVSNF 529
           F+++   +F
Sbjct: 535 FTNEVTVSF 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573279|ref|NP_974736.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003534|gb|AED90917.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/526 (69%), Positives = 427/526 (81%), Gaps = 12/526 (2%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRKKRE 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       +   +KRE
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSRRKKDLKLERVFRKRE 60

Query: 57  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 116
            + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+  GN
Sbjct: 61  TLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEAPGN 112

Query: 117 DVADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTN 176
           +  +      QD    EV+SGSPLPGV P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+
Sbjct: 113 EEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFFVTS 172

Query: 177 QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTL 236
           QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L
Sbjct: 173 QEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSL 232

Query: 237 QPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVI 296
           +PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTALV+
Sbjct: 233 EPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTALVL 292

Query: 297 GVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF 356
           GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGF
Sbjct: 293 GVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGF 352

Query: 357 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 416
           SLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+NPLVIW
Sbjct: 353 SLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLNPLVIW 412

Query: 417 AWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVL 476
           AWAGLLIN INSIPAGELDGG+IAF++WGRK +TRLTG SI LLGLS+LFSDV FYWVVL
Sbjct: 413 AWAGLLINGINSIPAGELDGGKIAFSIWGRKTATRLTGASIALLGLSALFSDVAFYWVVL 472

Query: 477 VFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 522
           +FFLQRGPIAPL+EEIT PDDKY++LG+LVLFL LLVCLPYPF F+
Sbjct: 473 IFFLQRGPIAPLAEEITVPDDKYVSLGILVLFLSLLVCLPYPFAFT 518

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187443|ref|NP_001190232.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003536|gb|AED90919.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/531 (68%), Positives = 426/531 (80%), Gaps = 25/531 (4%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKK----- 54
           MN    +FRGN  +L  CSSCC ++FQP +A+            NF     SR+K     
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSL--------NFGQTGTSRRKKDLKL 52

Query: 55  ---RELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 111
              RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N
Sbjct: 53  ERKRETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVN 104

Query: 112 QINGNDVADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDT 171
           +  GN+  +      QD    EV+SGSPLPGV P QLD+ +R+PKETIDIL+ QVFGFDT
Sbjct: 105 EAPGNEEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDT 164

Query: 172 FFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVV 231
           FFVT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVV
Sbjct: 165 FFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVV 224

Query: 232 PRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALV 291
           PR++L+PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALV
Sbjct: 225 PRRSLEPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALV 284

Query: 292 TALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAG 351
           TALV+GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAG
Sbjct: 285 TALVLGVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAG 344

Query: 352 PLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVN 411
           PLAGFSLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+N
Sbjct: 345 PLAGFSLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLN 404

Query: 412 PLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTF 471
           PLVIWAWAGLLIN INSIPAGELDGG+IAF++WGRK +TRLTG SI LLGLS+LFSDV F
Sbjct: 405 PLVIWAWAGLLINGINSIPAGELDGGKIAFSIWGRKTATRLTGASIALLGLSALFSDVAF 464

Query: 472 YWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 522
           YWVVL+FFLQRGPIAPL+EEIT PDDKY++LG+LVLFL LLVCLPYPF F+
Sbjct: 465 YWVVLIFFLQRGPIAPLAEEITVPDDKYVSLGILVLFLSLLVCLPYPFAFT 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810677|ref|XP_002873222.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319059|gb|EFH49481.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/557 (66%), Positives = 433/557 (77%), Gaps = 43/557 (7%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHV-----TRPVRCRLGNFSSYKVSRKK 54
           MN    +FRGN  +L  CSS C ++FQP +A+        TR  R R  N    +V RK 
Sbjct: 1   MNLAVASFRGNFGVLSQCSSYCSLQFQPFVAATSSLNFGQTRTSR-RKKNLKLERVFRK- 58

Query: 55  RELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQIN 114
           RE + RVT+TQTEP+ NND++    +G+E    T++D  D  +Q  ++L+SQ  + N+  
Sbjct: 59  RETLVRVTETQTEPEGNNDEDNNGEEGKE----TSAD--DPPTQIPTELNSQSTIVNEAP 112

Query: 115 GNDVADTKGGVQQDDGNGEVASGSPLPGV-----------------------------KP 145
           GN+  +      QD    EV+SGSPLPGV                             +P
Sbjct: 113 GNEEENKAQLSSQDGDKLEVSSGSPLPGVNVSITNNVKYKGDSLMLSIYLSFIKSCCEQP 172

Query: 146 QQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRM 205
            QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI TRM
Sbjct: 173 LQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGEPAKSYEKIKTRM 232

Query: 206 KNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNV 265
           +N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRNV
Sbjct: 233 ENNFGDQYKLFLLSNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRNV 292

Query: 266 PALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQI 325
           PALQS+LLS FDNL LL +GLPGALVT LV+GVHELGHIL A S G++LGVP+FVPSWQI
Sbjct: 293 PALQSDLLSAFDNLELLKDGLPGALVTTLVLGVHELGHILVANSLGIKLGVPFFVPSWQI 352

Query: 326 GSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFH 385
           GSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDASVFH
Sbjct: 353 GSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLLGLFVPPSDGIGVVVDASVFH 412

Query: 386 ESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG 445
           ESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGGRIAF++WG
Sbjct: 413 ESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGRIAFSIWG 472

Query: 446 RKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVL 505
           RK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++LG+L
Sbjct: 473 RKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITAPDDKYVSLGIL 532

Query: 506 VLFLGLLVCLPYPFPFS 522
           VLFL LLVCLPYPF F+
Sbjct: 533 VLFLSLLVCLPYPFAFT 549

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239226|ref|NP_196193.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|9759099|dbj|BAB09668.1| unnamed protein product [Arabidopsis thaliana] gi|332003535|gb|AED90918.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/555 (65%), Positives = 428/555 (77%), Gaps = 41/555 (7%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRKKRE 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       +   +KRE
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSRRKKDLKLERVFRKRE 60

Query: 57  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 116
            + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+  GN
Sbjct: 61  TLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEAPGN 112

Query: 117 DVADTKGGVQQDDGNGEVASGSPLPGV-----------------------------KPQQ 147
           +  +      QD    EV+SGSPLPGV                             +P Q
Sbjct: 113 EEENKAQFSSQDGDKLEVSSGSPLPGVNVSIIIHVIYKDDSIMFSGCLSFIKSCCEQPLQ 172

Query: 148 LDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKN 207
           LD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+N
Sbjct: 173 LDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTRMEN 232

Query: 208 KFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPA 267
            FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRNVPA
Sbjct: 233 NFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRNVPA 292

Query: 268 LQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGS 327
           LQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSWQIGS
Sbjct: 293 LQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQIGS 352

Query: 328 FGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHES 387
           FGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDASVFHES
Sbjct: 353 FGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASVFHES 412

Query: 388 FLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 447
           FLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++WGRK
Sbjct: 413 FLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSIWGRK 472

Query: 448 ASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVL 507
            +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++LG+LVL
Sbjct: 473 TATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLGILVL 532

Query: 508 FLGLLVCLPYPFPFS 522
           FL LLVCLPYPF F+
Sbjct: 533 FLSLLVCLPYPFAFT 547

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501144|ref|XP_003519388.1| PREDICTED: uncharacterized protein LOC100778800 [Glycine max]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/531 (70%), Positives = 433/531 (81%), Gaps = 22/531 (4%)

Query: 5   TTFRGNLSL-LPHCSSC--CDIRFQPILASLHVTRPVRCRLGNFSSYKVSR--KKRELIC 59
           + FRGNL + L  C+SC   D+RFQ      H     RCR   F   +  R  ++R + C
Sbjct: 9   SAFRGNLLVPLSRCTSCFKLDLRFQHSDGFRHS----RCRRSLFKLIRDPRSSRRRGIAC 64

Query: 60  RVTDTQTEPDSNND-KEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDV 118
            VT    EPD+ +D KEKE     E      S ++      D++  ++   EN+      
Sbjct: 65  SVT----EPDNGSDEKEKEADKNGETLRVEDSSEQSIPPPVDAEQLNEFSDENK------ 114

Query: 119 ADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQE 178
              +  VQ  D + EVASGSPLPGVKPQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+
Sbjct: 115 --GQSDVQNMDDSNEVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQD 172

Query: 179 PYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQP 238
           PYEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPEDDKPVAVVVPR TLQP
Sbjct: 173 PYEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDDKPVAVVVPRTTLQP 232

Query: 239 ETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGV 298
           ETTAVPEWFAAG+FGL+TVFTLLLRNVPALQS+LLSTFDNLNLL +GLPGALVTAL++GV
Sbjct: 233 ETTAVPEWFAAGSFGLITVFTLLLRNVPALQSDLLSTFDNLNLLKDGLPGALVTALILGV 292

Query: 299 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSL 358
           HELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++L
Sbjct: 293 HELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYAL 352

Query: 359 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW 418
           G +L L+GF+ PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAW
Sbjct: 353 GLLLLLLGFVLPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAW 412

Query: 419 AGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVF 478
           AGLLINAINSIPAGELDGGRI+FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+F
Sbjct: 413 AGLLINAINSIPAGELDGGRISFALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLIF 472

Query: 479 FLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 529
           FLQRGPIAPLSEEITDP +KY+A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 473 FLQRGPIAPLSEEITDPGEKYVAIGVTVLLLGLLVCLPYPFPFTEETITSF 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551482|ref|XP_003544103.1| PREDICTED: uncharacterized protein LOC100816506 [Glycine max]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/531 (69%), Positives = 436/531 (82%), Gaps = 25/531 (4%)

Query: 5   TTFRGNLSL-LPHCSSCC--DIRFQPILASLHVTRPVRCRLGNFSSYKVSR--KKRELIC 59
           ++FRGNL + L  C+SC   D+R Q      H+ RP       +SS+K+ R  ++R + C
Sbjct: 9   SSFRGNLLVPLSRCTSCLELDLRIQHSEGFRHL-RP------RWSSFKLIRNPRRRVIAC 61

Query: 60  RVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQING-NDV 118
            VT+     + +++KEKE     E  P   S ++      D++         QIN  +D 
Sbjct: 62  SVTEPH---NGSDEKEKEADKNGETLPLEDSSEQSIPPPVDAE---------QINEFSDE 109

Query: 119 ADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQE 178
              +  VQ  D + EVASGSPLPGVKPQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+
Sbjct: 110 NKGQSDVQNMDDSNEVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQD 169

Query: 179 PYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQP 238
           PYEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPED+ PVAVVVPR TLQP
Sbjct: 170 PYEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDNMPVAVVVPRTTLQP 229

Query: 239 ETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGV 298
           ETTAVPEWFAAG+FGLVTVFTLLLRNVP+LQS+LLSTFDNLNLL +GLPGALVTAL++GV
Sbjct: 230 ETTAVPEWFAAGSFGLVTVFTLLLRNVPSLQSDLLSTFDNLNLLKDGLPGALVTALILGV 289

Query: 299 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSL 358
           HELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++L
Sbjct: 290 HELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYAL 349

Query: 359 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW 418
           G +L L+GFI PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAW
Sbjct: 350 GLLLLLLGFILPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAW 409

Query: 419 AGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVF 478
           AGLLINAINSIPAGELDGGRI+FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+F
Sbjct: 410 AGLLINAINSIPAGELDGGRISFALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLIF 469

Query: 479 FLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 529
           FLQRGPIAPLSEEITDP +KY+A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 470 FLQRGPIAPLSEEITDPGEKYVAIGVTVLLLGLLVCLPYPFPFTEETLTSF 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052155|ref|XP_002455223.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor] gi|241927198|gb|EES00343.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/490 (66%), Positives = 402/490 (82%), Gaps = 16/490 (3%)

Query: 53  KKRELICR-VTDTQTEPDSNNDKEKEVHD----------GQENQPATASDQEDDKSQ--P 99
           + R++ C+ +T+T++E D + +++KE  D           + N PA +    D+K     
Sbjct: 55  RSRKVACQAMTETESEGDGDKEEKKEFGDDASSPSVDSVAEANGPAESDSSIDNKKDETA 114

Query: 100 DSQLDSQPQVENQINGNDVADTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETI 159
           +++L S       ++G+  A +   VQ++    EV SGSPLPG+K QQLD+ +RIPK TI
Sbjct: 115 NAELLSSSDTVQNVDGD--ATSTNDVQENVEVIEVVSGSPLPGMK-QQLDDSVRIPKATI 171

Query: 160 DILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLV 219
           DILKDQVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI+ R++NKFGD+YKLFLL+
Sbjct: 172 DILKDQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPAKSYEKITNRLQNKFGDEYKLFLLI 231

Query: 220 NPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNL 279
           NPED+KPVAVV+P++TLQPETTA+PEWFAA +FG+VT+FTLLLRNVP LQ NLLSTFDNL
Sbjct: 232 NPEDEKPVAVVIPKQTLQPETTALPEWFAAASFGIVTIFTLLLRNVPVLQDNLLSTFDNL 291

Query: 280 NLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVS 339
            LL +GL GALVTAL+IGVHE+GHILAA+ +G++LGVPYFVPSWQIGSFGAITRI NIV 
Sbjct: 292 ELLKDGLSGALVTALIIGVHEIGHILAARESGIKLGVPYFVPSWQIGSFGAITRIVNIVR 351

Query: 340 KREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLG 399
            REDLLK+AAAGPLAGFS GFVL L+GFI PPSDG+G+V+D +VFHESFL GG AKLLLG
Sbjct: 352 NREDLLKLAAAGPLAGFSFGFVLLLLGFILPPSDGLGLVIDPTVFHESFLVGGLAKLLLG 411

Query: 400 DVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVL 459
           DVLK+GT +S+NPLV+WAWAGLLINAINSIPAGELDGGRIA A+WGRK S+R++ ++I L
Sbjct: 412 DVLKEGTELSINPLVLWAWAGLLINAINSIPAGELDGGRIALAIWGRKISSRVSSLAIGL 471

Query: 460 LGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPF 519
           LG+S+LF+DV FYWVVL+FFLQRGPIAPLSEEITDP+  YI +GV +L  GLLVCLPYPF
Sbjct: 472 LGISALFNDVAFYWVVLIFFLQRGPIAPLSEEITDPESNYIGIGVAILLFGLLVCLPYPF 531

Query: 520 PFSDQAVSNF 529
           PF    +++ 
Sbjct: 532 PFDPSQLTDM 541

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218187492|gb|EEC69919.1| hypothetical protein OsI_00340 [Oryza sativa Indica Group]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/526 (64%), Positives = 414/526 (78%), Gaps = 21/526 (3%)

Query: 20  CCDIRFQPILASLHVT-RPVRCRLGNFSSYKVSRKKRELICR-VTDTQTEPDSNNDKEKE 77
           CC  R      SL  T RP R  L   S++ +  + R  +C+ +T+T+ + D N D+EKE
Sbjct: 23  CCQ-RILLASTSLPATGRPARLGLKLRSTHSLQIRNRRFVCQAMTETEPDGDGNGDEEKE 81

Query: 78  VHDGQENQPATAS-DQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQQDDGNG---- 132
                 + P+  S  QE+  ++ ++  D+    +++    +   +   VQ  DG+     
Sbjct: 82  ELGDDASSPSVYSVTQENGSAESETNADN---TKDETVNTEPLSSSDTVQNIDGDATPAS 138

Query: 133 ---------EVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGG 183
                    +VA GSPLPG+K QQLDE +RIPK TIDILKDQVFGFDTFFVT+QEPYEGG
Sbjct: 139 DAQENVEVVDVAVGSPLPGMK-QQLDESVRIPKATIDILKDQVFGFDTFFVTSQEPYEGG 197

Query: 184 VLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAV 243
           +LFKGNLRGQ AK+YEKI+ R++NKFGDQYKLFLL+NPEDDKPVAVVVPR+TLQPETTAV
Sbjct: 198 ILFKGNLRGQPAKSYEKITNRLQNKFGDQYKLFLLINPEDDKPVAVVVPRQTLQPETTAV 257

Query: 244 PEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGH 303
           PEWFAA +FG+VT+FTLLLRNVP LQ NLLSTFDNL LL +G+ GALVTA +IGVHE+ H
Sbjct: 258 PEWFAAASFGVVTIFTLLLRNVPLLQDNLLSTFDNLELLKDGVYGALVTAAIIGVHEIAH 317

Query: 304 ILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLF 363
           ILAA+ TG++L VPYFVPSWQIGSFGAITRI NIV  REDLLKVAAAGPLAGFSLGFVL 
Sbjct: 318 ILAARDTGIKLAVPYFVPSWQIGSFGAITRIVNIVRNREDLLKVAAAGPLAGFSLGFVLL 377

Query: 364 LVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLI 423
           L+GFI PPSDG+G+V+D +VFHESFL GG AKL+LGD LK+GT +S+NPLV+WAWAGLLI
Sbjct: 378 LLGFILPPSDGLGLVIDPAVFHESFLVGGLAKLILGDALKEGTKLSINPLVLWAWAGLLI 437

Query: 424 NAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRG 483
           NAINSIPAGELDGGRIAFA+WGRK S+R++ ++I LLG+S+LF+DV FYWVVL+FFLQRG
Sbjct: 438 NAINSIPAGELDGGRIAFAMWGRKISSRISSLAIGLLGISALFNDVAFYWVVLIFFLQRG 497

Query: 484 PIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 529
           PI+PLSEEIT+P++ YI++GV +L  GLLVCLPYPFPF    +++F
Sbjct: 498 PISPLSEEITEPENNYISIGVAILLFGLLVCLPYPFPFDPSQLTDF 543

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.716	0.681	0.704	2.9e-161
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.410	0.395	0.290	1.3e-30
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	0.640	0.591	0.239	1.6e-17

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1394 (495.8 bits), Expect = 2.9e-161, Sum P(2) = 2.9e-161
 Identities = 267/379 (70%), Positives = 301/379 (79%)

Query:   144 KPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIST 203
             +P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI T
Sbjct:   169 QPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKT 228

Query:   204 RMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLR 263
             RM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LR
Sbjct:   229 RMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLR 288

Query:   264 NVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSW 323
             NVPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSW
Sbjct:   289 NVPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSW 348

Query:   324 QIGSFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIGIVVDASV 383
             QIGSFGAITRI+NIV+KREDLLKVAAAGPLA               PPSDGIG+VVDASV
Sbjct:   349 QIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASV 408

Query:   384 FHESXXXXXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL 443
             FHES            D LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++
Sbjct:   409 FHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSI 468

Query:   444 WGRKASTRLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAXX 503
             WGRK +TRLT              DV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++  
Sbjct:   469 WGRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLG 528

Query:   504 XXXXXXXXXXXXPYPFPFS 522
                         PYPF F+
Sbjct:   529 ILVLFLSLLVCLPYPFAFT 547

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
 Identities = 65/224 (29%), Positives = 96/224 (42%)

Query:   278 NLNLLTNGLPGALVTAL-VIGV---HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 333
             ++ LL   +  AL  A  V+G+   HELGH LAA    V+L +PYF+P+  +GSFGAIT+
Sbjct:   286 DMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFIPNITLGSFGAITQ 345

Query:   334 IRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXX--XXPPSDGIGIV-VDASVFHESXXX 390
              ++I+  R   + ++ AGP A                  P     +V V + +F  S   
Sbjct:   346 FKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTEPDAANDLVQVPSMLFQGSLLL 405

Query:   391 XXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKAST 450
                              +S++PLVI  W GL   A N +P G LDGGR     +G+ A  
Sbjct:   406 GLISRATLGYAALHAATVSIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGKNALV 465

Query:   451 RLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITD 494
                               +   W + V   QR P  P   ++T+
Sbjct:   466 TFGLSTYVMLGLRVLGGPLALPWGLYVLICQRTPEKPCLNDVTE 509

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 88/368 (23%), Positives = 152/368 (41%)

Query:   157 ETIDILK-DQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKL 215
             + +D+ K    FGFDTFF T+   +  G +F GNLR    +   K+  ++    G    +
Sbjct:   176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query:   216 FLLVNPEDD--KPVAVVVPRKT--LQPETTAVPE-WFAAGAFGL-VTVF-TLLLRNVPAL 268
             + +    ++  K V +V P+    LQ E+T +   W    A  L VT F T+ L +   L
Sbjct:   236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query:   269 QSNLLSTFDNLNLLTNGLP--GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIG 326
             + +  +TFD+   + N +P  G  ++  ++GV E+   + A   GV+L   + VPS   G
Sbjct:   296 KPD--ATFDDY--IANVVPLFGGFLS--ILGVSEIATRVTAARHGVKLSPSFLVPSNWTG 349

Query:   327 SFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIG---IVVDASV 383
               G +    +++  ++ L  +  A   +                 S   G   + +    
Sbjct:   350 CLGVMNNYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYIRPQF 409

Query:   384 FHESXXXXXXX------XXXXXDVLK---DGTPISVNPLVIWAWAGLLINAINSIPAGEL 434
             F  +                  +VL    +G  + V+PL      G+++ ++N +P G L
Sbjct:   410 FDNNPLLSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRL 469

Query:   435 DGGRIAFALWGRKASTRLTXXXXXXXXXXXXXXDVT-FYWVVLVFFLQRGPIAPLSEEIT 493
             +GGRIA A++GR  +  L+               V    W +   F + G   P  +EIT
Sbjct:   470 EGGRIAQAMFGRSTAAILSFTTSLLLGIGGLSGSVLCLAWGLFATFFRGGEETPAKDEIT 529

Query:   494 DPDDKYIA 501
                D   A
Sbjct:   530 PVGDDRFA 537

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.85	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029258001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (543 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00007398001	SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_189, whole genome sho [...] (302 aa)				•			•		0.496
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.479
	GSVIVG00017440001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (113 aa)			•	•					0.465
	GSVIVG00016388001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (214 aa)				•			•		0.465
	GSVIVG00002190001	SubName- Full=Chromosome undetermined scaffold_127, whole genome shotgun sequence; (437 aa)			•	•					0.463
	GSVIVG00023602001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (180 aa)			•	•					0.453
	GSVIVG00019306001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (234 aa)			•	•					0.448
	GSVIVG00024719001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (396 aa)				•			•		0.420
	GSVIVG00022091001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (845 aa)				•			•		0.418
	GSVIVG00037015001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)				•			•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	529
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	5e-35
pfam02163	206	pfam02163, Peptidase_M50, Peptidase family M50	6e-19
cd05709	180	cd05709, S2P-M50, Site-2 protease (S2P) class of z	1e-16
cd06161	208	cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease	8e-16
cd06164	227	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 prote	2e-11
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	4e-06
cd06163	182	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 p	3e-05
COG1994	230	COG1994, SpoIVFB, Zn-dependent proteases [General	7e-04
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	0.003

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score =  129 bits (326), Expect = 5e-35
 Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 51/231 (22%)

Query: 251 AFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKST 310
              ++T+ T LL        +      N  LL  GLP AL    ++G+HE+GH LAA+  
Sbjct: 2   LLLVLTLLTTLL---VGAWLSGNDVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRH 58

Query: 311 GVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFP 370
           GV+  +PYF+P   IG+FGA  R+R+ +  R+ L  +A AGPLAG  L   + ++G    
Sbjct: 59  GVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---- 114

Query: 371 PSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP 430
                                                     L +  W GLL+ A+N +P
Sbjct: 115 ------------------------------------------LAVAGWVGLLVTALNLLP 132

Query: 431 AGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT--FYWVVLVFF 479
            G+LDGG I  AL+GR+ +  +    +V LGL +L+   +    W +L+  
Sbjct: 133 VGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLLLI 183

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|216910 pfam02163, Peptidase_M50, Peptidase family M50

 Score = 84.8 bits (210), Expect = 6e-19
 Identities = 49/209 (23%), Positives = 68/209 (32%), Gaps = 30/209 (14%)

Query: 287 PGALVTALVIGVHELGHILAAKSTGVE-----------------LGVPYFVPSWQIGSFG 329
              L   + + VHELGH L A+  GV+                     Y +      +FG
Sbjct: 1   AFILALLISVVVHELGHALVARRFGVKVERFAIGFGPLLFKHLDGATEYTIRLMFGWAFG 60

Query: 330 AITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 389
           A    R         L ++ AGPLA F L  +LF +  + P        V   V   S  
Sbjct: 61  APIERRFKKKSPWQRLLISLAGPLANFILALLLFALLLLLPG--IPVPPVIGGVVVGSSK 118

Query: 390 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---- 445
             G   +             V  L   A   L +   N +P   LDGG I  +L      
Sbjct: 119 LSGPVAIAKV-GSTSALSGLVALLAFLALLNLNLGLFNLLPIPPLDGGHILRSLLAVRGR 177

Query: 446 ------RKASTRLTGVSIVLLGLSSLFSD 468
                       +    ++LL L  LF+D
Sbjct: 178 PLNERAENYIYLVGLALLLLLILLLLFND 206

Length = 206

>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 47/200 (23%), Positives = 61/200 (30%), Gaps = 43/200 (21%)

Query: 286 LPGALVTALVIGVHELGHILAAKSTG--VELGVPYFVPSWQIGS---------FGAITRI 334
           L   L   + + VHELGH L A+  G  V      F  +               G   + 
Sbjct: 1   LAFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKP 60

Query: 335 -----RNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 389
                R     R   L VA AGPLA   L  +L L+  +        +   AS    + L
Sbjct: 61  VGENPRAFKKPRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLL 120

Query: 390 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---R 446
           A                          A   L +   N +P   LDGGRI  AL      
Sbjct: 121 AFL------------------------ALINLNLAVFNLLPIPPLDGGRILRALLEAIRG 156

Query: 447 KASTRLTGVSIVLLGLSSLF 466
           +   RL      +L    L 
Sbjct: 157 RVEERLEAYGFAILLGLLLL 176

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-binding proteins (SREBPs) from membranes of the ER. These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD superfamily. Prokaryotic S2P/M50 homologs have been shown to regulate stress responses, sporulation, cell division, and cell differentiation. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses, and in Bacillus subtilis, the S2P homolog SpoIVFB is involved in the pro-sigmaK pathway of spore formation. Some of the subfamilies within this hierarchy contain one or two PDZ domain insertions, with putative regulatory roles, such as the inhibition of substrate cleavage as seen by the RseP PDZ domain. Length = 180

>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 76.0 bits (188), Expect = 8e-16
 Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 51/207 (24%)

Query: 285 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 344
           GL  AL+  L + +HELGH L A+  G+       V S  +  FG +  +       ++ 
Sbjct: 30  GLLEALLLFLSVLLHELGHALVARRYGIR------VRSITLLPFGGVAELEEEPETPKEE 83

Query: 345 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 404
             +A AGPL    L  + +L+  + P                        + L       
Sbjct: 84  FVIALAGPLVSLLLAGLFYLLYLLLPGGG---------------PLSSLLEFL------- 121

Query: 405 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRKASTR-------LT 453
                       A   L++   N +PA  LDGGR+  AL     G + +TR       L 
Sbjct: 122 ------------AQVNLILGLFNLLPALPLDGGRVLRALLWRRTGYRRATRIAARIGQLF 169

Query: 454 GVSIVLLGLSSLFSDVTFYWVVLVFFL 480
            + +V+LGL  LF  +   W++L+   
Sbjct: 170 AILLVVLGLFLLFLGLGNLWLLLIALF 196

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. Length = 208

>gnl|CDD|100085 cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 55/213 (25%), Positives = 81/213 (38%), Gaps = 52/213 (24%)

Query: 285 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 344
           GL  AL+    + +HELGH L A+  G+       V S  +  FG + R+          
Sbjct: 45  GLAAALLLFASVLLHELGHSLVARRYGIP------VRSITLFLFGGVARLEREPETPGQE 98

Query: 345 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 404
             +A AGPL    L  +  L+    P S              +   G     L       
Sbjct: 99  FVIAIAGPLVSLVLALLFLLLSLALPGSG-------------AGPLGVLLGYL------- 138

Query: 405 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA-LWGRK---------AST--RL 452
                       A   LL+   N +PA  LDGGR+  A LW R          A+   R 
Sbjct: 139 ------------ALINLLLAVFNLLPAFPLDGGRVLRALLWRRTGDYLKATRIAAWVGRG 186

Query: 453 TGVSIVLLGLSSLFSDVT--FYWVVLVFFLQRG 483
             V +++LGL SLF ++    + +++ +FL  G
Sbjct: 187 FAVLLIILGLLSLFLNLLGGLWLILIAWFLYIG 219

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 227

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 39/204 (19%), Positives = 62/204 (30%), Gaps = 21/204 (10%)

Query: 285 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR-------IRNI 337
           G    L+T LVI +    H +AA+        P  +P  + G                  
Sbjct: 176 GDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPVVIPL-KPGDKIVAVDVGAIGLSPNGE 234

Query: 338 VSKREDLLKVAAAGPLAGFSLGF--VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAK 395
               + L+K    GPL    L       LV         + I  D S+     L+G    
Sbjct: 235 PDVGKVLVKY---GPLEAVGLAVEKTGRLVKLTLKMLKKL-ITGDLSL---KNLSGPIGI 287

Query: 396 LLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGV 455
             +         I  N L   A   + +  +N +P   LDGG + F L       +    
Sbjct: 288 AKIAGAAASLGLI--NLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEAL-RGKPLSE 344

Query: 456 SIVLLGLSSLFSDVTFYWVVLVFF 479
            +         + +    ++L  F
Sbjct: 345 RVEAALYRIGLALLLL-LMLLATF 367

Length = 375

>gnl|CDD|100084 cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 59/207 (28%), Positives = 83/207 (40%), Gaps = 51/207 (24%)

Query: 286 LPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFG-AITRIRNIVSKREDL 344
           L   LV  ++I VHELGH L AK  GV+      V  + IG FG  +   +    K E  
Sbjct: 2   LAFILVLGILIFVHELGHFLVAKLFGVK------VEEFSIG-FGPKLFSFK----KGETE 50

Query: 345 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHES--------FLAGGFAKL 396
             ++A  PL     G+V  L G    P +      D   F+            AG  A  
Sbjct: 51  YSISAI-PLG----GYVKML-GED--PEEEADPEDDPRSFNSKPVWQRILIVFAGPLANF 102

Query: 397 LLGDVLKDGTPISVNPLVIWAWAGLL-IN--AINSIPAGELDGGRIAFALW----GRKAS 449
           LL  VL           V+ ++  LL IN   +N +P   LDGG + F L     GR  S
Sbjct: 103 LLAIVLF---------AVLLSFLALLSINLGILNLLPIPALDGGHLLFLLIEAIRGRPLS 153

Query: 450 TRLTGVS-------IVLLGLSSLFSDV 469
            ++  +        ++ L L   F+D+
Sbjct: 154 EKVEEIIQTIGFALLLGLMLFVTFNDI 180

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA. Length = 182

>gnl|CDD|224905 COG1994, SpoIVFB, Zn-dependent proteases [General function prediction only]

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 39/188 (20%), Positives = 58/188 (30%), Gaps = 41/188 (21%)

Query: 299 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAI-TRIRNIVSKREDLLKVA-AAGPLAGF 356
           H LGH   A   G++L +         G    +    R     R     V+ A GPL   
Sbjct: 58  HPLGHSDEAGRLGLKLLLALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPLTNI 117

Query: 357 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 416
           +L  +  L   +F                 S L    A L L           VN     
Sbjct: 118 ALAVLGLLALSLFLYH--------------SVLFAFLAALAL-----------VN----- 147

Query: 417 AWAGLLINAINSIPAGELDGGRIAFALWGRKAS-----TRLTGVSIVLLGLSSLFSDVTF 471
               L++   N +P   LDGGR+  AL  R+         L  +  +L+ + +    +  
Sbjct: 148 ----LVLALFNLLPIPPLDGGRVLRALLPRRYGAAIAAIELAALLGLLVLILAGILGLLV 203

Query: 472 YWVVLVFF 479
               L   
Sbjct: 204 LNPPLRLI 211

Length = 230

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 37/232 (15%)

Query: 301 LGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGF 360
           L   L A+  G    V       +       +RIR +V+    LL +   GPL G  L  
Sbjct: 161 LEAYLGAQGIGALGTVFQAAIISRSLPRFLRSRIRRLVA---QLLYLLLLGPLGGLLLAL 217

Query: 361 VLFLVGFIFPP------SDGIGIVVDASVFHESFLAGGFAKLL--LGDVLKDGTPISVNP 412
           +L  +  +F        + G+  ++  S  H + LAG F  LL  LG  +    P+ +  
Sbjct: 218 LLGELSGLFKELWEAFRALGLAHLLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGL 277

Query: 413 L-VIWAW-AGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT 470
           L + +A   G   + + ++         +A AL    +   L+ + I+LL   ++   + 
Sbjct: 278 LALFYAILTGFSPSVLRALVM-------LALALLASLSLRNLSSIFILLLSAIAILL-LA 329

Query: 471 FYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 522
              ++ + F        LS         ++A+  L+L+  L   L   +P  
Sbjct: 330 PLAILSLGF-------WLS---------FLAVAALILWSQLFRLLGLSWPLP 365

Length = 453

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	529
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	99.97
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.93
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.91
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.85
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.85
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.82
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	99.78
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	99.76
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	99.75
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.53
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.5
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	99.32
COG0750	375	Predicted membrane-associated Zn-dependent proteas	98.87
PF13398	200	Peptidase_M50B: Peptidase M50B-like	97.35
COG0750	375	Predicted membrane-associated Zn-dependent proteas	96.24
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	95.41

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.97  E-value=4e-31  Score=252.63  Aligned_cols=176  Identities=40%  Similarity=0.723  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHhhcccccccchhccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccccccceeeccceE
Q 009660          252 FGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI  331 (529)
Q Consensus       252 ~~l~Tl~Tt~~ag~~~L~~~~~~~~~~~~~l~~glp~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P~FIP~i~LgtFGAv  331 (529)
                      ++++|+.+....+.- .+.+  +..++++.+..+++++++++.++++||+||+++||++|+|++.++++|...+|++|++
T Consensus         3 ~~~~s~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~   79 (183)
T cd06160           3 LLVLTLLTTLLVGAW-LSGN--DVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAF   79 (183)
T ss_pred             HHHHHHHHHHHHHHH-Hhcc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEE
Confidence            456677766655421 1111  2336778888999999999999999999999999999999999999998779999999


Q ss_pred             EeeccccCCccceeeeeecchhhHHHHHHHHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccch
Q 009660          332 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVN  411 (529)
Q Consensus       332 ir~~s~~~~RkalfdIAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lh  411 (529)
                      +++++..++|+++++|++|||++|+++++++++++                                             
T Consensus        80 ~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~~---------------------------------------------  114 (183)
T cd06160          80 IRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---------------------------------------------  114 (183)
T ss_pred             EEecCCCCChhHhehhhhhHHHHHHHHHHHHHHHH---------------------------------------------
Confidence            99998888999999999999999999988775543                                             


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhh--hhHHHHHH
Q 009660          412 PLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSD--VTFYWVVL  476 (529)
Q Consensus       412 PL~~agwinLvltafNLLPigPLDGGrIl~Allgrr~a~~i~~~~~ilLGl~~l~~~--~~l~W~il  476 (529)
                       +..++|+|+++++|||+|++|||||||+++++++|.+.++++++.+++|+.++.++  .+++|+.+
T Consensus       115 -~~~~~~~nl~l~~fNLLPi~PLDGGril~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (183)
T cd06160         115 -LAVAGWVGLLVTALNLLPVGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALL  180 (183)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCCcChHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             12468999999999999999999999999999999999999999888888888765  45555543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.93  E-value=3.8e-25  Score=217.52  Aligned_cols=134  Identities=31%  Similarity=0.406  Sum_probs=111.3

Q ss_pred             cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccccccceeeccceEEeeccccCCccceeeeeecchhhHH
Q 009660          277 DNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF  356 (529)
Q Consensus       277 ~~~~~l~~glp~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P~FIP~i~LgtFGAvir~~s~~~~RkalfdIAlAGPLAg~  356 (529)
                      .+...+..|+.++++++.++++||+||+++||++|+++.      .+.+.+||+++++++...++++++.|++|||++|+
T Consensus        37 ~~~~~~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~~IalAGPl~Nl  110 (227)
T cd06164          37 LGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIPVR------SITLFLFGGVARLEREPETPGQEFVIAIAGPLVSL  110 (227)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEC------eEEEEeeeEEEEecCCCCCHHHHhhhhhhHHHHHH
Confidence            345667889999999999999999999999999999997      67788899999999888889999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCCh
Q 009660          357 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDG  436 (529)
Q Consensus       357 llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigPLDG  436 (529)
                      +++++++++....+...            .+.+                    ...+.+.+|+|+++++|||+|++||||
T Consensus       111 lla~i~~~l~~~~~~~~------------~~~~--------------------~~~~~~~~~~Nl~l~~fNLlP~~PLDG  158 (227)
T cd06164         111 VLALLFLLLSLALPGSG------------AGPL--------------------GVLLGYLALINLLLAVFNLLPAFPLDG  158 (227)
T ss_pred             HHHHHHHHHHHHhcccc------------chHH--------------------HHHHHHHHHHHHHHHHHhCcCCCCCCh
Confidence            99998877665432110            0000                    122456789999999999999999999


Q ss_pred             HHHHHHHhhhhH
Q 009660          437 GRIAFALWGRKA  448 (529)
Q Consensus       437 GrIl~Allgrr~  448 (529)
                      |||+++++.++.
T Consensus       159 gril~~ll~~~~  170 (227)
T cd06164         159 GRVLRALLWRRT  170 (227)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.91  E-value=1.6e-23  Score=203.08  Aligned_cols=129  Identities=29%  Similarity=0.430  Sum_probs=107.9

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccccccceeeccceEEeeccccCCccceeeeeecchhhHHHHH
Q 009660          280 NLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG  359 (529)
Q Consensus       280 ~~l~~glp~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P~FIP~i~LgtFGAvir~~s~~~~RkalfdIAlAGPLAg~llA  359 (529)
                      ..+..++.+++.++.++++||+||+++||++|+++.      .+.+.+||+++++++...+|++++.|++|||++|++++
T Consensus        25 ~~~~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la   98 (208)
T cd06161          25 VAWLLGLLEALLLFLSVLLHELGHALVARRYGIRVR------SITLLPFGGVAELEEEPETPKEEFVIALAGPLVSLLLA   98 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc------ceEEEeeeeeeeeccCCCChhHheeeeeehHHHHHHHH
Confidence            457788999999999999999999999999999997      77888899999998777789999999999999999999


Q ss_pred             HHHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHH
Q 009660          360 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRI  439 (529)
Q Consensus       360 l~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigPLDGGrI  439 (529)
                      +++.++....+..              +.                    ....+.+.+++|+++++|||+|+.|||||||
T Consensus        99 ~~~~~l~~~~~~~--------------~~--------------------~~~~~~~~~~~N~~l~lfNLlPi~pLDGg~i  144 (208)
T cd06161          99 GLFYLLYLLLPGG--------------GP--------------------LSSLLEFLAQVNLILGLFNLLPALPLDGGRV  144 (208)
T ss_pred             HHHHHHHHHcccc--------------hH--------------------HHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            9887655432110              00                    0123456789999999999999999999999


Q ss_pred             HHHHhhhhH
Q 009660          440 AFALWGRKA  448 (529)
Q Consensus       440 l~Allgrr~  448 (529)
                      +++++.++.
T Consensus       145 l~~ll~~~~  153 (208)
T cd06161         145 LRALLWRRT  153 (208)
T ss_pred             HHHHHHHhc
Confidence            999987764

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=8.5e-21  Score=181.56  Aligned_cols=113  Identities=34%  Similarity=0.438  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccCC-c-ccccc------------ceeeccceEEeeccccC-------------
Q 009660          287 PGALVTALVIGVHELGHILAAKSTGVELGV-P-YFVPS------------WQIGSFGAITRIRNIVS-------------  339 (529)
Q Consensus       287 p~aL~Ll~iL~vHElGH~laAr~~Gvk~s~-P-~FIP~------------i~LgtFGAvir~~s~~~-------------  339 (529)
                      .+.+++..++++||+||+++||++|+|+.. . -|=|.            +.+.++|+++++++..+             
T Consensus         3 ~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~f   82 (182)
T cd06163           3 AFILVLGILIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRSF   82 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHHH
Confidence            355667778999999999999999999863 0 01121            23567999999864321             


Q ss_pred             ---CccceeeeeecchhhHHHHHHHHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHH
Q 009660          340 ---KREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW  416 (529)
Q Consensus       340 ---~RkalfdIAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~a  416 (529)
                         ++++++.|++|||++|+++|++++++.                                              +.+.
T Consensus        83 ~~~~~~~ri~V~lAGP~~NlilA~i~~~~~----------------------------------------------~~~~  116 (182)
T cd06163          83 NSKPVWQRILIVFAGPLANFLLAIVLFAVL----------------------------------------------LSFL  116 (182)
T ss_pred             ccCCcchhhhhhhhHHHHHHHHHHHHHHHH----------------------------------------------HHHH
Confidence               467899999999999999998764321                                              1245


Q ss_pred             HHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 009660          417 AWAGLLINAINSIPAGELDGGRIAFALWG  445 (529)
Q Consensus       417 gwinLvltafNLLPigPLDGGrIl~Allg  445 (529)
                      .++|+.+++|||+|++||||||++++++.
T Consensus       117 ~~~n~~l~~fNLlPippLDGg~il~~~~~  145 (182)
T cd06163         117 ALLSINLGILNLLPIPALDGGHLLFLLIE  145 (182)
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            78999999999999999999999999985

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=6e-21  Score=179.22  Aligned_cols=140  Identities=28%  Similarity=0.307  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccCC----ccccc-------cceeeccceEEeeccccC-----Cccceeeeeec
Q 009660          287 PGALVTALVIGVHELGHILAAKSTGVELGV----PYFVP-------SWQIGSFGAITRIRNIVS-----KREDLLKVAAA  350 (529)
Q Consensus       287 p~aL~Ll~iL~vHElGH~laAr~~Gvk~s~----P~FIP-------~i~LgtFGAvir~~s~~~-----~RkalfdIAlA  350 (529)
                      .+.++++.++.+||+||+++||++|+++..    ..+.|       .+.+.++|+++++.+...     +|++++.|++|
T Consensus         2 ~~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~~~~~~~~~~~i~la   81 (180)
T cd05709           2 AFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRAFKKPRWQRLLVALA   81 (180)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhhhccchhhhhhhhhh
Confidence            356678889999999999999999998741    11112       122345699998877654     48899999999


Q ss_pred             chhhHHHHHHHHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcC
Q 009660          351 GPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP  430 (529)
Q Consensus       351 GPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLP  430 (529)
                      ||++|++++++++.+....+.....    ....-..                    ....+.+.+++|+|+.+++|||+|
T Consensus        82 GPl~nllla~i~~~~~~~~~~~~~~----~~~~~~~--------------------~~~~~~l~~~~~~n~~l~~fNLlP  137 (180)
T cd05709          82 GPLANLLLALLLLLLLLLLGGLPPA----PVGQAAS--------------------SGLANLLAFLALINLNLAVFNLLP  137 (180)
T ss_pred             hHHHHHHHHHHHHHHHHHHccCCcc----chhhhHH--------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999987765543221000    0000000                    011245678899999999999999


Q ss_pred             CCCCChHHHHHHHhhhhHHH
Q 009660          431 AGELDGGRIAFALWGRKAST  450 (529)
Q Consensus       431 igPLDGGrIl~Allgrr~a~  450 (529)
                      ++||||||++++++.++..+
T Consensus       138 i~plDGg~il~~~l~~~~~~  157 (180)
T cd05709         138 IPPLDGGRILRALLEAIRGR  157 (180)
T ss_pred             CCCCChHHHHHHHHhHHHHH
Confidence            99999999999999887643

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.82  E-value=4.2e-19  Score=178.69  Aligned_cols=119  Identities=26%  Similarity=0.325  Sum_probs=93.6

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccccccceeeccceEEeecccc---CCccceeeeeecchhhHHHH
Q 009660          282 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIV---SKREDLLKVAAAGPLAGFSL  358 (529)
Q Consensus       282 l~~glp~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P~FIP~i~LgtFGAvir~~s~~---~~RkalfdIAlAGPLAg~ll  358 (529)
                      ....+.+.++++.++.+||+||+++||++|+++..-.+  .+.+.++||++++++..   .++++++.|++|||++|+++
T Consensus       107 ~i~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl--~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvl  184 (263)
T cd06159         107 FIPLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGL--LLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVV  184 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhH--HHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHH
Confidence            33556667788889999999999999999999983211  01123588999886544   46789999999999999999


Q ss_pred             HHHHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHH
Q 009660          359 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGR  438 (529)
Q Consensus       359 Al~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigPLDGGr  438 (529)
                      |++++++..                                             +.+..|+|+.+++|||+|+.||||||
T Consensus       185 a~i~~~l~~---------------------------------------------l~~~~~~N~~l~lFNLlP~~PLDGg~  219 (263)
T cd06159         185 ALIAFALFF---------------------------------------------LYWIFWINFLLGLFNCLPAIPLDGGH  219 (263)
T ss_pred             HHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhCCCCCCCChHH
Confidence            987654321                                             22457899999999999999999999


Q ss_pred             HHHHHhhhh
Q 009660          439 IAFALWGRK  447 (529)
Q Consensus       439 Il~Allgrr  447 (529)
                      ++++++..+
T Consensus       220 il~~ll~~~  228 (263)
T cd06159         220 VFRDLLEAL  228 (263)
T ss_pred             HHHHHHHHH
Confidence            999997554

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.78  E-value=6.8e-19  Score=166.18  Aligned_cols=127  Identities=28%  Similarity=0.345  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccCCccc----ccc----------ceeeccceE---------------Eeecccc
Q 009660          288 GALVTALVIGVHELGHILAAKSTGVELGVPYF----VPS----------WQIGSFGAI---------------TRIRNIV  338 (529)
Q Consensus       288 ~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P~F----IP~----------i~LgtFGAv---------------ir~~s~~  338 (529)
                      +.++++.++.+||+||+++|+++|+|+.....    .+.          +.+.++|++               ...+...
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            35677889999999999999999999975421    110          001122322               2222234


Q ss_pred             CCccceeeeeecchhhHHHHHHHHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHHHH
Q 009660          339 SKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW  418 (529)
Q Consensus       339 ~~RkalfdIAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~agw  418 (529)
                      .+|++.+.|++|||++|++++++++.+.........                              ......+.+.+++|
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~  131 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGSVG------------------------------WSSFFAEFLFFFAW  131 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS-------------------------------------EETTEEHHHHHHH
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhcccc------------------------------ccHHHHHHHHHHHH
Confidence            567889999999999999999988776554221100                              01112356778999


Q ss_pred             HHHHHHHHhhcCCCCCChHHHHHHHh
Q 009660          419 AGLLINAINSIPAGELDGGRIAFALW  444 (529)
Q Consensus       419 inLvltafNLLPigPLDGGrIl~All  444 (529)
                      +|+.++++||+|++||||||++++++
T Consensus       132 ~n~~l~~~NllPi~~lDG~~il~~l~  157 (192)
T PF02163_consen  132 LNFILALFNLLPIPPLDGGRILRALL  157 (192)
T ss_dssp             HHHHHHHHTTSSSSSSHHHHHHHHHH
T ss_pred             HHHHHhhhhcccCCcCCHHHHHHHHH
Confidence            99999999999999999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=99.76  E-value=8.5e-18  Score=170.22  Aligned_cols=114  Identities=25%  Similarity=0.235  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccCCccccccceeecc----ceEEeeccc---cCCccceeeeeecchhhHHHHHH
Q 009660          288 GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSF----GAITRIRNI---VSKREDLLKVAAAGPLAGFSLGF  360 (529)
Q Consensus       288 ~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P~FIP~i~LgtF----GAvir~~s~---~~~RkalfdIAlAGPLAg~llAl  360 (529)
                      +.++++.++.+||+||+++|+++|+++.      .+.+..|    ||+++..+.   ..++++++.|+.|||++|+++|+
T Consensus       130 ~l~al~isvvvHElgHal~A~~~gi~V~------~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~  203 (277)
T cd06162         130 YFTALLISGVVHEMGHGVAAVREQVRVN------GFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGL  203 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeec------eEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHHHH
Confidence            3456788999999999999999999998      4333333    899998443   23567789999999999999998


Q ss_pred             HHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHH
Q 009660          361 VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA  440 (529)
Q Consensus       361 ~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigPLDGGrIl  440 (529)
                      +++++.+                 .                         ..+.+..++|+.+++|||+|+.|||||||+
T Consensus       204 i~~~l~~-----------------~-------------------------~~l~~la~iNl~lavfNLlP~~pLDGg~il  241 (277)
T cd06162         204 VGYLLLI-----------------E-------------------------TFLKYLISLSGALAVINAVPCFALDGQWIL  241 (277)
T ss_pred             HHHHHHH-----------------H-------------------------HHHHHHHHHHHHHHHhhcCCCCCCChHHHH
Confidence            7754321                 0                         012356789999999999999999999999


Q ss_pred             HHHhhhhHH
Q 009660          441 FALWGRKAS  449 (529)
Q Consensus       441 ~Allgrr~a  449 (529)
                      ++++.++..
T Consensus       242 ~~ll~~~~~  250 (277)
T cd06162         242 STFLEATLV  250 (277)
T ss_pred             HHHHHHHhC
Confidence            999766543

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.75  E-value=5e-18  Score=162.03  Aligned_cols=135  Identities=25%  Similarity=0.308  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccCC----cccccc--------ce--ee--ccceEEeec-----cccCCccceee
Q 009660          288 GALVTALVIGVHELGHILAAKSTGVELGV----PYFVPS--------WQ--IG--SFGAITRIR-----NIVSKREDLLK  346 (529)
Q Consensus       288 ~aL~Ll~iL~vHElGH~laAr~~Gvk~s~----P~FIP~--------i~--Lg--tFGAvir~~-----s~~~~Rkalfd  346 (529)
                      ..++++.++.+||+||+++|+++|+++..    -.+.|.        +.  +.  ..+++++..     ...++|++++.
T Consensus         4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~   83 (181)
T cd06158           4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLL   83 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhh
Confidence            44567779999999999999999999862    223331        00  11  023454432     22346688999


Q ss_pred             eeecchhhHHHHHHHHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHHHHHHHHHHHH
Q 009660          347 VAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAI  426 (529)
Q Consensus       347 IAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~agwinLvltaf  426 (529)
                      |++|||++|+++++++.++........+         ...+.+                    ...+.+..++|+.+++|
T Consensus        84 valAGP~~n~~la~i~~~~~~~~~~~~~---------~~~~~l--------------------~~~~~~~~~~Ni~l~lf  134 (181)
T cd06158          84 VSLAGPLSNLLLALLFALLLRLLPAFGG---------VVASFL--------------------FLMLAYGVLINLVLAVF  134 (181)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhccccc---------hhhHHH--------------------HHHHHHHHHHHHHHHHH
Confidence            9999999999999887655443211100         001111                    12234567899999999


Q ss_pred             hhcCCCCCChHHHHHHHhhhhHHHH
Q 009660          427 NSIPAGELDGGRIAFALWGRKASTR  451 (529)
Q Consensus       427 NLLPigPLDGGrIl~Allgrr~a~~  451 (529)
                      ||+|++|||||||+++++.++....
T Consensus       135 NLlPipPLDG~~il~~~l~~~~~~~  159 (181)
T cd06158         135 NLLPIPPLDGSKILAALLPRRLAEA  159 (181)
T ss_pred             HhCCCCCCChHHHHHHHcchhHHHH
Confidence            9999999999999999998876543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>TIGR00054 RIP metalloprotease RseP

Probab=99.53  E-value=1.7e-13  Score=145.74  Aligned_cols=79  Identities=28%  Similarity=0.463  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccCC-cc-cccc------------ceeeccceEEeeccc----------------
Q 009660          288 GALVTALVIGVHELGHILAAKSTGVELGV-PY-FVPS------------WQIGSFGAITRIRNI----------------  337 (529)
Q Consensus       288 ~aL~Ll~iL~vHElGH~laAr~~Gvk~s~-P~-FIP~------------i~LgtFGAvir~~s~----------------  337 (529)
                      +.+.+.+++++||+||+++||++|+++.. .. |=|.            +-+.++|+++++...                
T Consensus         9 ~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~~f   88 (420)
T TIGR00054         9 SILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGDLF   88 (420)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhhhh
Confidence            35566678899999999999999999862 11 1121            336789999998411                


Q ss_pred             -cCCccceeeeeecchhhHHHHHHHHHHhh
Q 009660          338 -VSKREDLLKVAAAGPLAGFSLGFVLFLVG  366 (529)
Q Consensus       338 -~~~RkalfdIAlAGPLAg~llAl~ll~iG  366 (529)
                       ..+.++++.|.+|||++|+++|++++++.
T Consensus        89 ~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~  118 (420)
T TIGR00054        89 NNKSVFQKAIIIFAGPLANFIFAIFVYIFI  118 (420)
T ss_pred             ccCCHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence             03557889999999999999999887644

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.50  E-value=2.4e-13  Score=145.56  Aligned_cols=82  Identities=21%  Similarity=0.293  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCc--ccccc-------------ceeeccceEEeeccc------------
Q 009660          285 GLPGALVTALVIGVHELGHILAAKSTGVELGVP--YFVPS-------------WQIGSFGAITRIRNI------------  337 (529)
Q Consensus       285 glp~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P--~FIP~-------------i~LgtFGAvir~~s~------------  337 (529)
                      .+.+.+++..++++||+||+++||++|+|+..=  -|=|.             +-+-++|++.+|...            
T Consensus         7 i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~~   86 (449)
T PRK10779          7 LAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRHH   86 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhhh
Confidence            344666677788999999999999999999731  11121             235678999987532            


Q ss_pred             ---cCCccceeeeeecchhhHHHHHHHHHHhh
Q 009660          338 ---VSKREDLLKVAAAGPLAGFSLGFVLFLVG  366 (529)
Q Consensus       338 ---~~~RkalfdIAlAGPLAg~llAl~ll~iG  366 (529)
                         .++.++++.|.+|||++|+++|++++.+-
T Consensus        87 ~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~  118 (449)
T PRK10779         87 AFNNKTVGQRAAIIAAGPIANFIFAIFAYWLV  118 (449)
T ss_pred             hhccCCHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence               13357889999999999999999886543

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=99.32  E-value=2.2e-11  Score=120.17  Aligned_cols=128  Identities=26%  Similarity=0.317  Sum_probs=84.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccccccceeeccceEEeeccccCCccceee-------eeec-chh
Q 009660          282 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLK-------VAAA-GPL  353 (529)
Q Consensus       282 l~~glp~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P~FIP~i~LgtFGAvir~~s~~~~Rkalfd-------IAlA-GPL  353 (529)
                      +.++....++++..+..||+||...++++|.+..      .+.++.+|++..++..+.+.+..+.       ++.| ||+
T Consensus        41 ~~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~------~~~i~~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~algpl  114 (230)
T COG1994          41 LGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLL------LALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPL  114 (230)
T ss_pred             HhhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHH------HHHHHhccceeeecCcCcCHHHHhhhhccchhHHHHHHHH
Confidence            4455555555777899999999999999999886      4444346777777665555544444       4555 666


Q ss_pred             hHHHHHHHHHHhhhccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 009660          354 AGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGE  433 (529)
Q Consensus       354 Ag~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigP  433 (529)
                      .|+.+++++ ....  +..           ...+.                    ...-+...+.+|+++++|||+|++|
T Consensus       115 ~ni~la~~~-~~~~--~~~-----------~~~~~--------------------~~~~~~~la~~Nl~L~lFNLiPi~P  160 (230)
T COG1994         115 TNIALAVLG-LLAL--SLF-----------LYHSV--------------------LFAFLAALALVNLVLALFNLLPIPP  160 (230)
T ss_pred             HHHHHHHHH-HHhh--ccc-----------ccchh--------------------HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            666555443 1100  000           00000                    0112235567899999999999999


Q ss_pred             CChHHHHHHHhhhhHH
Q 009660          434 LDGGRIAFALWGRKAS  449 (529)
Q Consensus       434 LDGGrIl~Allgrr~a  449 (529)
                      |||||++++++.++..
T Consensus       161 LDGg~vlr~~~~~~~~  176 (230)
T COG1994         161 LDGGRVLRALLPRRYG  176 (230)
T ss_pred             CChHHHHHHHccHHHH
Confidence            9999999999888765

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=98.87  E-value=1.7e-09  Score=111.73  Aligned_cols=242  Identities=14%  Similarity=0.057  Sum_probs=138.1

Q ss_pred             cccccceeeeccccccCceEEEEeccCCchHHHHHHHHHHHHhHhCCceEEEEEecCCCCCCEEEEEcCCCCCCCCCChh
Q 009660          165 QVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVP  244 (529)
Q Consensus       165 ~~Fg~dtF~~t~~~~~~~gvi~rGnLR~~~e~~y~~l~~~l~~~fGd~y~lfl~~~~~~~kPv~~v~P~~~~~p~~~~~~  244 (529)
                      .+++.++|+.....+ ...+++.|.+.......+..+...+  ..|..+         ...|+..   +  ....     
T Consensus        82 ~~~~~~~f~~~~~~~-~~~~~~~Gp~~n~i~~~~~~~~~~~--~~G~~~---------~~~~~~~---~--v~~~-----  139 (375)
T COG0750          82 PEPRPRAFNAKSVWQ-RIAIVFAGPLFNFILAIVLFVVLFF--VIGLVP---------VASPVVG---E--VAPK-----  139 (375)
T ss_pred             cCcchhhhhcccccc-hhheeechHHHHHHHHHHHHHhhhe--Eeeeee---------eccCeee---e--cCCC-----
Confidence            588899999999999 9999999999987766665544433  223111         1122211   0  0000     


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhccccchHHHHh------hHHHHHHHHHHHHHH--HHHHHHHHHHcCCccCC
Q 009660          245 EWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTN------GLPGALVTALVIGVH--ELGHILAAKSTGVELGV  316 (529)
Q Consensus       245 ~~~~~~l~~l~Tl~Tt~~ag~~~L~~~~~~~~~~~~~l~~------glp~aL~Ll~iL~vH--ElGH~laAr~~Gvk~s~  316 (529)
                               ..+..+.+..|...+..|- +...+++....      +.++.  .+.+.+.|  +..|..+++.++.....
T Consensus       140 ---------s~a~~a~l~~Gd~iv~~~~-~~i~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~  207 (375)
T COG0750         140 ---------SAAALAGLRPGDRIVAVDG-EKVASWDDVRRLLVAAAGDVFN--LLTILVIRLDGEAHAVAAEIIKSLGLT  207 (375)
T ss_pred             ---------CHHHHcCCCCCCEEEeECC-EEccCHHHHHHHHHhccCCccc--ceEEEEEeccceeeeccccceeeEeee
Confidence                     0112223344433333221 11222322222      22222  34567788  99999999988888888


Q ss_pred             ccccccceeeccceEEe--eccccCC-----ccceeeeeecchhhHHHHHHHHHHhhhccCCCCCccccccccchhhhhh
Q 009660          317 PYFVPSWQIGSFGAITR--IRNIVSK-----REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL  389 (529)
Q Consensus       317 P~FIP~i~LgtFGAvir--~~s~~~~-----RkalfdIAlAGPLAg~llAl~ll~iGl~l~~s~~~~~~v~~~~f~~s~L  389 (529)
                      |+++| ...+..++.++  ..+..++     ++...++..+++++. .+.-...++++.+...    .......++.+.+
T Consensus       208 P~~~~-~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~~-~v~~~~~~~~~~~~~l----~~~~~~~~~~~~l  281 (375)
T COG0750         208 PVVIP-LKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVGL-AVEKTGRLVKLTLKML----KKLITGDLSLKNL  281 (375)
T ss_pred             cceec-cCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHHH-HHHHHHHHHHHHHHHH----HHheecccccccc
Confidence            98876 44555555443  3344444     788999999999993 3333333333322100    0000111112222


Q ss_pred             hhhHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhhhH
Q 009660          390 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKA  448 (529)
Q Consensus       390 lg~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigPLDGGrIl~Allgrr~  448 (529)
                      .+.+.....+....  .....+++.+++|+|+.++++||+|+++|||||++++++.+..
T Consensus       282 ~Gpi~i~~~~~~~~--~~~~~~~l~~~~~lsi~lg~lNllP~p~LDGG~i~~~~~e~~~  338 (375)
T COG0750         282 SGPIGIAKIAGAAA--SLGLINLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEALR  338 (375)
T ss_pred             cCceehhhhhhHHH--hhHHHHHHHHHHHHHHHHHHHhccCCCccCccHHHHHHHHHHh
Confidence            22111111111000  1234689999999999999999999999999999999986654

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=97.35  E-value=0.00066  Score=66.21  Aligned_cols=65  Identities=31%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCccCCccccccceeec-cceEEeeccccCCccceeeeeecchhhHHHHHHHHHHhh
Q 009660          294 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGS-FGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  366 (529)
Q Consensus       294 ~iL~vHElGH~laAr~~Gvk~s~P~FIP~i~Lgt-FGAvir~~s~~~~RkalfdIAlAGPLAg~llAl~ll~iG  366 (529)
                      ....+||+||+++|...|-|+.      .+.+.+ -++.+..+.  +++...+.++.|||++..+++..++..+
T Consensus        23 l~t~~HE~gHal~a~l~G~~v~------~i~l~~~~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   23 LVTFVHELGHALAALLTGGRVK------GIVLFPDGSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc------eEEEEeCCCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            3578999999999999999998      554433 466777666  5666789999999999999887776555

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=96.24  E-value=0.013  Score=60.87  Aligned_cols=81  Identities=28%  Similarity=0.402  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccCCcc--ccc-------c------ceeeccceEEeeccccC------------
Q 009660          287 PGALVTALVIGVHELGHILAAKSTGVELGVPY--FVP-------S------WQIGSFGAITRIRNIVS------------  339 (529)
Q Consensus       287 p~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P~--FIP-------~------i~LgtFGAvir~~s~~~------------  339 (529)
                      .+.+.+...+.+||+||+|.||++|+++....  |-|       .      +...+.|++.++.....            
T Consensus         7 ~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv~~~~~~~~~~~~~~~~~~~   86 (375)
T COG0750           7 AFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYVKMLGEDAEEVVLKGPEPRP   86 (375)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceEEEecCccccccccccCcch
Confidence            34555666889999999999999999997421  112       0      12345666665532211            


Q ss_pred             ------CccceeeeeecchhhHHHHHHHHHHhhh
Q 009660          340 ------KREDLLKVAAAGPLAGFSLGFVLFLVGF  367 (529)
Q Consensus       340 ------~RkalfdIAlAGPLAg~llAl~ll~iGl  367 (529)
                            +-...+.+-++||+.|++.++...+...
T Consensus        87 ~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          87 RAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             hhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence                  1123678999999999998877765543

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.012  Score=63.17  Aligned_cols=80  Identities=28%  Similarity=0.303  Sum_probs=52.4

Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHHHcCCccCCccccccceeeccceEEeeccc----cCCccceeeeeecchhhHHHH
Q 009660          284 NGLPGA-LVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNI----VSKREDLLKVAAAGPLAGFSL  358 (529)
Q Consensus       284 ~glp~a-L~Ll~iL~vHElGH~laAr~~Gvk~s~P~FIP~i~LgtFGAvir~~s~----~~~RkalfdIAlAGPLAg~ll  358 (529)
                      .+++|. ..++..+.+||+||+|||.+.|+++..  |--.+..--=||++.+...    .+.- ....|.=||-.-||++
T Consensus       121 ~~I~yf~t~lvi~~vvHElGHalAA~segV~vng--fgIfi~aiyPgafvdl~~dhLqsl~~f-r~LrIfcAGIWHNfvf  197 (484)
T KOG2921|consen  121 SGIAYFLTSLVITVVVHELGHALAAASEGVQVNG--FGIFIAAIYPGAFVDLDNDHLQSLPSF-RALRIFCAGIWHNFVF  197 (484)
T ss_pred             ccchhhhhhHHHHHHHHHhhHHHHHHhcCceeee--eEEEEEEEcCchhhhhhhhHHhhcchH-HHHHHHhhhHHHHHHH
Confidence            345544 456668889999999999999999972  1001111123566655432    2222 2457889999999999


Q ss_pred             HHHHHHhh
Q 009660          359 GFVLFLVG  366 (529)
Q Consensus       359 Al~ll~iG  366 (529)
                      |+++.+.-
T Consensus       198 allc~lal  205 (484)
T KOG2921|consen  198 ALLCVLAL  205 (484)
T ss_pred             HHHHHHHH
Confidence            98886543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	529
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	7e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Length = 224

 Score = 78.8 bits (194), Expect = 7e-17
 Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 46/212 (21%)

Query: 272 LLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI 331
           ++     +N         ++  + + +HELGH   AK  GV++     +P       G +
Sbjct: 27  VIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGV 80

Query: 332 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAG 391
             +  I  + E  L++  AGPL  F +G VL +V   F  +     +             
Sbjct: 81  AMMDKIPKEGE--LRIGIAGPLVSFIIGIVLLIVSQFFDININGYPL------------- 125

Query: 392 GFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRK 447
                                L   +   L++   N IPA  +DGGRI  A+    +G  
Sbjct: 126 ---------------------LYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKKYGYL 164

Query: 448 ASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFF 479
            ST++       L L  L   +    ++L+  
Sbjct: 165 KSTKIAANIGKSLALIMLLFGLLSMNIILILV 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 68/458 (14%), Positives = 122/458 (26%), Gaps = 139/458 (30%)

Query: 120 DTKGGVQQDDGNGEVASGSPLPGVKPQQLDEYIR------IPKETIDILKDQVFGFDTFF 173
           D + G +      ++              D ++       +      IL  +    D   
Sbjct: 8   DFETG-EHQYQYKDIL---------SVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHII 55

Query: 174 VTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLL--VNPEDDKPVAVVV 231
           ++         LF   L  +  +  +K    ++      YK FL+  +  E  +P     
Sbjct: 56  MSKDAVSGTLRLF-WTLLSKQEEMVQKF---VEEVLRINYK-FLMSPIKTEQRQP----- 105

Query: 232 PRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVP------ALQSNLLSTFDNLNLLTNG 285
              T          +          VF     NV        L+  LL      N+L +G
Sbjct: 106 SMMTRMYIEQRDRLY------NDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 286 LPGALVTALVIGVHELGHILAAKSTGVELGVPY--------------------------F 319
           + G+  T + + V          S  V+  + +                           
Sbjct: 158 VLGSGKTWVALDV--------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 320 VPSWQIGSFGAIT----------RIRNIVSKR---EDLL---KVAAAGPLAGFSLG-FVL 362
            P+W   S  +             +R ++  +     LL    V  A     F+L   +L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 363 FL-----VGFIFPPSDGIGIVVD--ASVFHESFLAGGFAKLLLGDVLKDGTP---ISVNP 412
                  V      +    I +D  +       +     K L  D      P   ++ NP
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNP 327

Query: 413 LVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT-- 470
             +            SI A  +  G   +  W      +LT  +I+   L+ L       
Sbjct: 328 RRL------------SIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRK 373

Query: 471 FYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLF 508
            +  + VF                P   +I   +L L 
Sbjct: 374 MFDRLSVF----------------PPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	529
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.91

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=2.1e-24  Score=210.41  Aligned_cols=120  Identities=30%  Similarity=0.440  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccCCccccccceeeccceEEeeccccCCccceeeeeecchhhHHHHHHHHHHhh
Q 009660          287 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  366 (529)
Q Consensus       287 p~aL~Ll~iL~vHElGH~laAr~~Gvk~s~P~FIP~i~LgtFGAvir~~s~~~~RkalfdIAlAGPLAg~llAl~ll~iG  366 (529)
                      .++++++.++++||+||+++||++|+++..      +.+.+||+++++++.  +|+++++|++|||++|++++++++.+.
T Consensus        42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~------i~l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~~~~~~  113 (224)
T 3b4r_A           42 VLFILLFVSVVLHELGHSYVAKKYGVKIEK------ILLLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIVLLIVS  113 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------EEECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccc------EEEEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999999985      444558999988763  458899999999999999998887664


Q ss_pred             hccCCCCCccccccccchhhhhhhhhHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 009660          367 FIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR  446 (529)
Q Consensus       367 l~l~~s~~~~~~v~~~~f~~s~Llg~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigPLDGGrIl~Allgr  446 (529)
                      ...+...                                 .. ...+.+++|+|+++++|||+|++|||||||+++++++
T Consensus       114 ~~~~~~~---------------------------------~~-~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~  159 (224)
T 3b4r_A          114 QFFDINI---------------------------------NG-YPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK  159 (224)
T ss_dssp             TTCCCEE---------------------------------TT-EEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred             HHccCcc---------------------------------hH-HHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence            3221100                                 00 1224467999999999999999999999999999887


Q ss_pred             hH
Q 009660          447 KA  448 (529)
Q Consensus       447 r~  448 (529)
                      +.
T Consensus       160 ~~  161 (224)
T 3b4r_A          160 KY  161 (224)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00