Citrus Sinensis ID: 009702

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTGTNKQPSESPVSSTTPSQSAKDYDFSSLTAGMFTKH
ccccHHHcHHHHHHHHHHHHHHHccccccccccccccccccEEccccEEEEccccccccccccccccEEEcccccccHHHHHHHHHHccccccccHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccHHHHHHHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccc
MNEKANVSKELNARHRKILEGLlklpenrecadckakgprwasvNLGIFICMQCSGIHRSLGVHISKVRsatldtwlPEQVAFIQSTACDCGFFLYTAMGNekansyweaelppnydrvgIENFIRAKYEekrwvsrdgqanspprgleekasihwqrpgeksghgytdnsenlseerkhvqapstkdsvpaarislplpprgpdqvvaitkpqqtestvapagatnqssdanlavpppkvdfasdlfdmlsgdspnensseaasaddnLWAGFQSAVetstaekkdstkavesspqsatgiedlfkdspslatpsssekpqkdlKNDIMSLFEksnmvspfamHQQQLTMLAQQQSLLMAAAAksggdpkfsssfqlpvsngtnlpsnfgnqipgimmpgagtADLQKLMQAMSiapaqqvgagpADLQKLMQAMSmvpthqvaagpADIQKLMQAMsmapthqggnsvpfptssfptmgqvnpangvtstgtnkqpsespvssttpsqsakdydfssltagmftkh
mnekanvskelnaRHRKILegllklpenreCADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKyeekrwvsrdgqanspprgleekasihwqrpgeksghgYTDNSENLSEERKHvqapstkdsvpaarislplpprgpDQVVAITKPQQTESTVapagatnqssdanlavPPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVEtstaekkdstkavesspqsatgiedLFKDSPSlatpsssekpqkdLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTgtnkqpsespvssttpsqsakdydfssltagmftkh
MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPnensseaasaddnLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFamhqqqltmlaqqqsllmaaaaKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTGTNKqpsespvssttpsqsAKDYDFSSLTAGMFTKH
*****************ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWV*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*********************LLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVS*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AGM****
*********ELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRW*******************************************************VPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSG************ADDNLWAGFQSA*********************ATGIEDLFKDSP************KDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLM***********FSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVT***********************DYDFSSLTAGMFTKH
********KELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR******************************************************************************************************************************************************************************************DLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNP*******************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTGTNKQPSESPVSSTTPSQSAKDYDFSSLTAGMFTKH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query528 2.2.26 [Sep-21-2011]
Q9FL69483 Probable ADP-ribosylation yes no 0.886 0.968 0.558 1e-143
Q0WQQ1232 Probable ADP-ribosylation no no 0.234 0.534 0.698 1e-52
Q5F413428 Stromal membrane-associat yes no 0.223 0.275 0.477 6e-32
Q7TN29428 Stromal membrane-associat yes no 0.25 0.308 0.427 7e-31
Q5EA00429 Stromal membrane-associat yes no 0.25 0.307 0.421 1e-30
Q8WU79429 Stromal membrane-associat yes no 0.25 0.307 0.421 1e-30
Q91VZ6440 Stromal membrane-associat no no 0.202 0.243 0.487 7e-30
Q8IYB5467 Stromal membrane-associat no no 0.202 0.229 0.479 4e-29
Q9UT34320 Uncharacterized protein C yes no 0.212 0.35 0.484 3e-28
P40529298 ADP-ribosylation factor G yes no 0.204 0.362 0.476 5e-26
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function desciption
 Score =  507 bits (1306), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 303/543 (55%), Positives = 355/543 (65%), Gaps = 75/543 (13%)

Query: 1   MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
           MNEKANVSKELNARHRKILEGLLK PENRECADCK KGPRWASVNLGIFICMQCSGIHRS
Sbjct: 1   MNEKANVSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRS 60

Query: 61  LGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVG 120
           LGVHISKVRSATLDTWLPEQVAFIQS            MGN+KANSYWEAELPPNYDRVG
Sbjct: 61  LGVHISKVRSATLDTWLPEQVAFIQS------------MGNDKANSYWEAELPPNYDRVG 108

Query: 121 IENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKH 180
           IENFIRAKYEEKRWVSR  +A SPPR +E++     +R G    HG++ +  NL EERK 
Sbjct: 109 IENFIRAKYEEKRWVSRGEKARSPPR-VEQERRKSVERSGPGYEHGHSSSPVNLFEERKT 167

Query: 181 VQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQT-ESTVAPAGATNQSSDANLAVPPP 239
           + A  T+++V A RI+LP+PP+GP QV+   KPQQ  ES   P     Q+ +   A  PP
Sbjct: 168 IPASRTRNNVAATRINLPVPPQGPSQVI---KPQQKMESAATPVEREKQAVNVAPASDPP 224

Query: 240 KVDFASDLFDMLSGDSPNENSSEA----ASADDNLWAGFQSAVETSTAEKKDSTK--AVE 293
           KVDFA+DLF+MLS D    N+SEA      ADDN WAGFQSA    TAEK  + K     
Sbjct: 225 KVDFATDLFNMLSMDDSTTNTSEATPGDTPADDNSWAGFQSAGSGQTAEKIVTAKPAESS 284

Query: 294 SSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLA 353
           S P S++  EDLFKD+P+L T    ++  KD+K DIMSLFEK+N+VSPFAMHQQQ+ MLA
Sbjct: 285 SPPASSSDFEDLFKDTPNLTT----QQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLA 340

Query: 354 QQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPS-NFGN----QIPGIMMPGAGTADLQ 408
           QQQ+L MAAA  +GG P   +  Q  ++N  N+ S N+ N    QIPG+  P  G ADLQ
Sbjct: 341 QQQALYMAAAKAAGGTPNGVN--QQAIANALNVASANWSNPGGYQIPGMTNPVGGQADLQ 398

Query: 409 KLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGN 468
           KLMQ M++                           +   PA  Q+              N
Sbjct: 399 KLMQNMNMN------------------------ANMNTRPAQPQE--------------N 420

Query: 469 SVPFPTSSFPTMGQVNPANGVTSTGTNKQPSES---PVSSTTPSQSAKDYDFSSLTAGMF 525
           ++ +P+SSF TMGQ N  NG+T   T K  S S   P S+T  SQS KD+DFSSL  GMF
Sbjct: 421 TLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQPTSTTPSSQSGKDFDFSSLMDGMF 480

Query: 526 TKH 528
           TKH
Sbjct: 481 TKH 483
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q0WQQ1|AGD15_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1 Back     alignment and function description
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q91VZ6|SMAP1_MOUSE Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9UT34|YIQ9_SCHPO Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.09c PE=4 SV=1 Back     alignment and function description
>sp|P40529|AGE2_YEAST ADP-ribosylation factor GTPase-activating protein effector protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AGE2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query528
359493891478 PREDICTED: probable ADP-ribosylation fac 0.886 0.979 0.632 1e-172
225461326475 PREDICTED: probable ADP-ribosylation fac 0.886 0.985 0.630 1e-170
224115066492 predicted protein [Populus trichocarpa] 0.899 0.965 0.637 1e-169
255580436482 Stromal membrane-associated protein, put 0.892 0.977 0.617 1e-163
224123040478 predicted protein [Populus trichocarpa] 0.884 0.976 0.621 1e-162
359806292500 uncharacterized protein LOC100807561 [Gl 0.933 0.986 0.611 1e-162
449464762510 PREDICTED: probable ADP-ribosylation fac 0.888 0.919 0.571 1e-158
356543996484 PREDICTED: probable ADP-ribosylation fac 0.882 0.962 0.589 1e-157
356549775481 PREDICTED: probable ADP-ribosylation fac 0.880 0.966 0.597 1e-154
356517205484 PREDICTED: probable ADP-ribosylation fac 0.901 0.983 0.576 1e-148
>gi|359493891|ref|XP_003634688.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 2 [Vitis vinifera] gi|302143074|emb|CBI20369.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 339/536 (63%), Positives = 387/536 (72%), Gaps = 68/536 (12%)

Query: 1   MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
           MNEKANV+KELNARHRKILEGLLKLPENRECADCK+KGPRWASVNLGIFICMQCSGIHRS
Sbjct: 1   MNEKANVTKELNARHRKILEGLLKLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRS 60

Query: 61  LGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVG 120
           LGVHISKVRSATLDTWLPEQVAFIQS            MGNEKANSYWEAELPPNYDRVG
Sbjct: 61  LGVHISKVRSATLDTWLPEQVAFIQS------------MGNEKANSYWEAELPPNYDRVG 108

Query: 121 IENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKH 180
           IENFIRAKYE+KRW+ +DG+  S  +G EEKAS HW RPG++ G G T NSEN  EE+K+
Sbjct: 109 IENFIRAKYEDKRWIPKDGKPRSTSQGREEKASAHWHRPGDRGGSGNTSNSENSFEEKKN 168

Query: 181 VQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQT----ESTVAPAGATNQSSDANLAV 236
           VQAPS KD+ PA RISLP+PP+GP+ V  I KP Q     E +V  A +  Q++D+   V
Sbjct: 169 VQAPSIKDNGPATRISLPVPPKGPEPVAPIPKPHQVTQKPEPSVPQAESAKQAADSTPVV 228

Query: 237 PPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVETSTAEKKDSTKAVESSP 296
           PPPKVD+A+DLF+MLS D P EN SEAASADDN WAGFQSA +TSTAEK    K +E + 
Sbjct: 229 PPPKVDYATDLFNMLSMDDPTENGSEAASADDNAWAGFQSAEQTSTAEKTAPAKPIEGNT 288

Query: 297 QSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQ 356
           QS +GIEDLFKDSPS+  P++S+KPQKD+KNDIMSLFEKSNMVSPF++HQQQL MLAQQQ
Sbjct: 289 QSTSGIEDLFKDSPSI-MPAASDKPQKDVKNDIMSLFEKSNMVSPFSLHQQQLAMLAQQQ 347

Query: 357 SLLMAAAAKSGG-DPKFSSSFQLPVSNGTNLPS----NFGNQIPGIMMPGAGTADLQKLM 411
           SLLMAAAAKS G  PKFS + Q   SNGT+LP+    N G QIPG+MM  AG  D+QK M
Sbjct: 348 SLLMAAAAKSTGVAPKFSINAQQHSSNGTDLPTQNWPNMGYQIPGMMMQAAGNNDMQKFM 407

Query: 412 QAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVP 471
           QA ++ P                                            TH  GNSVP
Sbjct: 408 QAANMGP--------------------------------------------THPAGNSVP 423

Query: 472 FPTSSFPTMGQVNPANGVTSTGTNKQPSESPVSSTTPSQSAKDYDFSSLTAGMFTK 527
           F TSS  TMGQV P NGV +T  ++ PS S   +T P+Q  K+YDFSSLT GMF+K
Sbjct: 424 FATSSMYTMGQVAPTNGVATTSVSRPPSAS--PATPPTQPGKEYDFSSLTQGMFSK 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461326|ref|XP_002284562.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115066|ref|XP_002316931.1| predicted protein [Populus trichocarpa] gi|222859996|gb|EEE97543.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255580436|ref|XP_002531044.1| Stromal membrane-associated protein, putative [Ricinus communis] gi|223529372|gb|EEF31337.1| Stromal membrane-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224123040|ref|XP_002330426.1| predicted protein [Populus trichocarpa] gi|222871811|gb|EEF08942.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359806292|ref|NP_001240964.1| uncharacterized protein LOC100807561 [Glycine max] gi|255635528|gb|ACU18115.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449464762|ref|XP_004150098.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543996|ref|XP_003540442.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Glycine max] Back     alignment and taxonomy information
>gi|356549775|ref|XP_003543266.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Glycine max] Back     alignment and taxonomy information
>gi|356517205|ref|XP_003527279.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query528
TAIR|locus:2162580483 AGD5 "AT5G54310" [Arabidopsis 0.850 0.929 0.519 6.1e-110
TAIR|locus:2090517232 AGD15 "AT3G17660" [Arabidopsis 0.234 0.534 0.698 2e-47
ZFIN|ZDB-GENE-060920-2483 smap1 "stromal membrane-associ 0.571 0.625 0.328 6.4e-37
CGD|CAL0003973387 orf19.1396 [Candida albicans ( 0.363 0.496 0.386 1.3e-33
UNIPROTKB|A1EAA2446 SMAP1 "SMAP1 protein" [Canis l 0.445 0.526 0.335 1.3e-32
UNIPROTKB|Q5F413428 SMAP2 "Stromal membrane-associ 0.25 0.308 0.440 3.7e-31
FB|FBgn0033349517 CG8243 [Drosophila melanogaste 0.568 0.580 0.304 1.8e-30
WB|WBGene00012359495 W09D10.1 [Caenorhabditis elega 0.232 0.248 0.489 2.2e-30
ASPGD|ASPL0000049357565 AN1931 [Emericella nidulans (t 0.244 0.228 0.482 3.9e-30
UNIPROTKB|E1BX68447 E1BX68 "Uncharacterized protei 0.323 0.382 0.389 9.9e-30
TAIR|locus:2162580 AGD5 "AT5G54310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
 Identities = 257/495 (51%), Positives = 303/495 (61%)

Query:     1 MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
             MNEKANVSKELNARHRKILEGLLK PENRECADCK KGPRWASVNLGIFICMQCSGIHRS
Sbjct:     1 MNEKANVSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRS 60

Query:    61 LGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVG 120
             LGVHISKVRSATLDTWLPEQVAFIQS            MGN+KANSYWEAELPPNYDRVG
Sbjct:    61 LGVHISKVRSATLDTWLPEQVAFIQS------------MGNDKANSYWEAELPPNYDRVG 108

Query:   121 IENFIRAKYEEKRWVSRDGQANSPPRGLEEKA-SIHWQRPGEKSGHGYTDNSENLSEERK 179
             IENFIRAKYEEKRWVSR  +A SPPR  +E+  S+    PG +  HG++ +  NL EERK
Sbjct:   109 IENFIRAKYEEKRWVSRGEKARSPPRVEQERRKSVERSGPGYE--HGHSSSPVNLFEERK 166

Query:   180 HVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQT-ESTVAPAGATNQSSDANLAVPP 238
              + A  T+++V A RI+LP+PP+GP QV+   KPQQ  ES   P     Q+ +   A  P
Sbjct:   167 TIPASRTRNNVAATRINLPVPPQGPSQVI---KPQQKMESAATPVEREKQAVNVAPASDP 223

Query:   239 PKVDFASDLFDMLSGDSPXXXXXXXXXXXXXL----WAGFQSAVETSTAEKKDSTKAVES 294
             PKVDFA+DLF+MLS D                    WAGFQSA    TAEK  + K  ES
Sbjct:   224 PKVDFATDLFNMLSMDDSTTNTSEATPGDTPADDNSWAGFQSAGSGQTAEKIVTAKPAES 283

Query:   295 S--PQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFXXXXXXXXXX 352
             S  P S++  EDLFKD+P+L T    ++  KD+K DIMSLFEK+N+VSPF          
Sbjct:   284 SSPPASSSDFEDLFKDTPNLTT----QQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVAML 339

Query:   353 XXXXXXXXXXXXKSGGDPKFSSSFQLPVSNGTNLPS-NFGN----QIPGIMMPGAGTADL 407
                          +GG P   +  Q  ++N  N+ S N+ N    QIPG+  P  G ADL
Sbjct:   340 AQQQALYMAAAKAAGGTPNGVN--QQAIANALNVASANWSNPGGYQIPGMTNPVGGQADL 397

Query:   408 QKLMQAMSI-APAQQVGAGPAD--LQKLMQAM-SMVPTHQV------AAGPADIQKLMQA 457
             QKLMQ M++ A      A P +  LQ    +  +M   +QV      + G        Q 
Sbjct:   398 QKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQP 457

Query:   458 MSMAPTHQGGNSVPF 472
              S  P+ Q G    F
Sbjct:   458 TSTTPSSQSGKDFDF 472
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0010227 "floral organ abscission" evidence=IMP
GO:0032857 "activation of ARF GTPase activity" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
TAIR|locus:2090517 AGD15 "AT3G17660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060920-2 smap1 "stromal membrane-associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
CGD|CAL0003973 orf19.1396 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|A1EAA2 SMAP1 "SMAP1 protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F413 SMAP2 "Stromal membrane-associated protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0033349 CG8243 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00012359 W09D10.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049357 AN1931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E1BX68 E1BX68 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FL69AGD5_ARATHNo assigned EC number0.55800.88630.9689yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 3e-58
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 2e-45
COG5347319 COG5347, COG5347, GTPase-activating protein that r 1e-34
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 4e-16
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 2e-11
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 2e-11
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  188 bits (481), Expect = 3e-58
 Identities = 68/129 (52%), Positives = 85/129 (65%), Gaps = 18/129 (13%)

Query: 16  RKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
           +++L  L KLP N+ CADC A  P WAS+NLGIFIC++CSG+HRSLGVHISKVRS TLD 
Sbjct: 1   KRLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDK 60

Query: 76  WLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNY------DRVGIENFIRAKY 129
           W PEQ+ F++            A GN++AN +WEA LPP        DR   E+FIRAKY
Sbjct: 61  WTPEQLEFMK------------AGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKY 108

Query: 130 EEKRWVSRD 138
            EK +   +
Sbjct: 109 VEKLFAEAE 117

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 528
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 100.0
PLN03131 705 hypothetical protein; Provisional 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.97
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.96
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.93
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.93
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.9
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.85
KOG0702524 consensus Predicted GTPase-activating protein [Sig 99.82
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.74
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.65
KOG0521785 consensus Putative GTPase activating proteins (GAP 93.0
PRK00085247 recO DNA repair protein RecO; Reviewed 83.74
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5.5e-45  Score=363.96  Aligned_cols=278  Identities=36%  Similarity=0.521  Sum_probs=189.2

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHh
Q 009702            6 NVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQ   85 (528)
Q Consensus         6 ~~SK~l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq   85 (528)
                      .+.+...++++++|++|++.|+|++|||||+++|+|||+|+|||||++|+||||+||+||||||||+||.|++|||++|+
T Consensus         3 ~~~~~~~~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~   82 (287)
T KOG0703|consen    3 RVEKGSNERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMI   82 (287)
T ss_pred             cccccccchHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHH
Confidence            34456678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccccccchHHHHHHHhhcCCCCCChH----HHHHHHHHHhhhCccccCCCCCCCCCcccccccccccCCCCC
Q 009702           86 STACDCGFFLYTAMGNEKANSYWEAELPPNYDRV----GIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGE  161 (528)
Q Consensus        86 ~~~~~~g~~Ll~~gGN~kAN~iwEa~LPpssD~~----~re~FIRaKY~eKrF~~~~~~~~~ps~~~~ek~~~~~~~~~~  161 (528)
                      .            +||.++|.|||+++|..+++.    .+|+|||+|||.|+|+.++..-...++.+++...    +...
T Consensus        83 ~------------~GN~~an~~~ea~~p~~~~~p~~d~~~e~FIR~KYE~kkf~~~~~~~~s~~~~~~~~~k----~~~~  146 (287)
T KOG0703|consen   83 S------------MGNAKANSYYEAKLPDPFRRPGPDDLVEQFIRDKYERKKFLDPEEDITSKPGSRDEESK----RSDK  146 (287)
T ss_pred             H------------HcchhhhhhccccCCccccCCChHHHHHHHHHHHHhhhhhccchhhcccCCCccccccc----cccc
Confidence            9            999999999999999887654    3999999999999999876222222222222211    1111


Q ss_pred             CCCCCCCCCCcchhhhhhcCCCCCCCCCCCccccccCCCCCCCCccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCc
Q 009702          162 KSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKV  241 (528)
Q Consensus       162 ~sg~~~~~s~~~~f~e~~~~~~~~~k~~~~atr~~~pa~~~~p~~v~~~pkpq~~eP~~~~~~~~~~~~~~~~~~~pPKv  241 (528)
                      +........+..++. ..       +...-..+.  +...                    +.......++..........
T Consensus       147 ~~~~~~~s~s~~~~~-~~-------r~~~~~~~~--~~~s--------------------~~~~~~~~~~~~~~~i~~~~  196 (287)
T KOG0703|consen  147 RSRKLSSSLSRSFVK-SA-------REDQLKYFL--PKTS--------------------QPVDDLATFQGPIASPHNLQ  196 (287)
T ss_pred             Cccccccchhhhhhh-hc-------ccccccccc--ccCC--------------------CCchhhhhccCccccccchh
Confidence            122222222222221 11       111111111  1000                    11111222222234456666


Q ss_pred             ccccccccccCCCCCCCCCccc---cCCCCCccccccccccccccccCCCCCcccCCccccccccccccCCCCCCCCCCC
Q 009702          242 DFASDLFDMLSGDSPNENSSEA---ASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSS  318 (528)
Q Consensus       242 d~AtdLFdlLsmD~~~en~s~a---~~~dDn~waGFqSA~~~sta~k~~~~~~~eS~~~StsgiEDlFkdsp~~~~~~~~  318 (528)
                      +++ +|.+.|.+++   +..++   -.+.+..|+.|+.+...-+ +...+..+..+....-...+ ++++-+...+    
T Consensus       197 ~~~-~~~s~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~f~~~~-~~~~~~~~~~----  266 (287)
T KOG0703|consen  197 TTY-SLNSTLNIFG---SGKEAADSFTLRAARFAPLAVAFSTVT-EDLVPFLQRNSLSEGFMEKT-LSKPKRWFGT----  266 (287)
T ss_pred             eee-cccccccccc---CccccCCCcccccccccccccccccCc-cccccccccccccccccCcc-cccccccccc----
Confidence            778 8888888888   22222   1277888888887765555 66666666666555555555 7777333322    


Q ss_pred             CCCcchhhhhHHHhhccCcccCcchhhHH
Q 009702          319 EKPQKDLKNDIMSLFEKSNMVSPFAMHQQ  347 (528)
Q Consensus       319 ~~~qk~~KndImsLfeksn~~spf~~~qq  347 (528)
                      .      . .|++|| +-..+.||..++|
T Consensus       267 ~------~-~~~~~~-~~~~~~~~~~~~~  287 (287)
T KOG0703|consen  267 Q------Q-SKSSLF-FLDGNVPFGSKES  287 (287)
T ss_pred             C------c-cccccc-cccccccccccCC
Confidence            2      5 899999 9999999987764

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 5e-30
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 2e-27
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 3e-22
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 3e-22
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 3e-22
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-19
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 4e-19
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 2e-16
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 3e-16
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 5e-16
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 9e-16
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 2e-15
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 6e-15
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 7e-15
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-14
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 4e-14
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 2e-13
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 6e-13
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (323), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/134 (45%), Positives = 86/134 (64%), Gaps = 16/134 (11%)
Query: 14  RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
           R++ +L  LL   +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  L
Sbjct: 13  RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNL 72
Query: 74  DTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDR----VGIENFIRAKY 129
           D W  EQ+  +Q             MGN KAN  +EA LP  + R      +E FIR KY
Sbjct: 73  DQWTQEQIQCMQE------------MGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKY 120
Query: 130 EEKRWVSRDGQANS 143
           E+K+++ R    N+
Sbjct: 121 EKKKYMDRSLDINA 134
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 1e-63
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-61
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 7e-59
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 1e-58
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 4e-57
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 1e-56
2owa_A138 Arfgap-like finger domain containing protein; zinc 2e-54
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 8e-54
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 7e-49
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 2e-48
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 2e-44
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 3e-44
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 3e-40
3o47_A329 ADP-ribosylation factor GTPase-activating protein 9e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
 Score =  203 bits (517), Expect = 1e-63
 Identities = 65/149 (43%), Positives = 94/149 (63%), Gaps = 16/149 (10%)

Query: 2   NEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSL 61
           +  +  +++LN +H+ IL  LL+  +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+L
Sbjct: 3   SGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNL 62

Query: 62  GVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNY----D 117
           GVHIS+V+S  LD W  EQ+  +Q             MGN KA   +EA LP N+     
Sbjct: 63  GVHISRVKSVNLDQWTAEQIQCMQD------------MGNTKARLLYEANLPENFRRPQT 110

Query: 118 RVGIENFIRAKYEEKRWVSRDGQANSPPR 146
              +E FIR KYE+K++  ++  A S P 
Sbjct: 111 DQAVEFFIRDKYEKKKYYDKNAIAISGPS 139
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query528
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 99.98
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 99.97
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.97
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.96
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.96
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.96
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.96
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.96
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.94
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 83.58
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.7e-40  Score=296.46  Aligned_cols=123  Identities=49%  Similarity=0.889  Sum_probs=107.6

Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHH
Q 009702            5 ANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFI   84 (528)
Q Consensus         5 a~~SK~l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~M   84 (528)
                      +..+++..++++++|+.|++.|+|+.|||||+++|+|||+|||||||+.|+||||+||+|||+||||+||+|++++|++|
T Consensus         4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m   83 (134)
T 2iqj_A            4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM   83 (134)
T ss_dssp             ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred             ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccccccccchHHHHHHHhhcCCCCC----ChHHHHHHHHHHhhhCccccCCC
Q 009702           85 QSTACDCGFFLYTAMGNEKANSYWEAELPPNY----DRVGIENFIRAKYEEKRWVSRDG  139 (528)
Q Consensus        85 q~~~~~~g~~Ll~~gGN~kAN~iwEa~LPpss----D~~~re~FIRaKY~eKrF~~~~~  139 (528)
                      +.            +||.++|.|||+++|+.+    ....+|+|||+||++|+|+.+..
T Consensus        84 ~~------------~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~  130 (134)
T 2iqj_A           84 QE------------MGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL  130 (134)
T ss_dssp             HT------------CHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred             HH------------HchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence            98            999999999999998654    23568999999999999997643
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 528
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 2e-46
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  156 bits (395), Expect = 2e-46
 Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 20/131 (15%)

Query: 16  RKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
           ++I+  + ++  N  C DC A  P W S NLGI  C++CSGIHR LGVH S+++S TLD 
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 76  WLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELP--------PNYDRVGIENFIRA 127
               ++   ++            +GN   N   E  LP        P  D +  +++I A
Sbjct: 63  LGTSELLLAKN------------IGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITA 110

Query: 128 KYEEKRWVSRD 138
           KY E+R+  + 
Sbjct: 111 KYMERRYARKK 121

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query528
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 83.81
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-38  Score=280.24  Aligned_cols=111  Identities=38%  Similarity=0.747  Sum_probs=103.6

Q ss_pred             HHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhhcccccccc
Q 009702           15 HRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGFF   94 (528)
Q Consensus        15 ~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~~~~~~g~~   94 (528)
                      .+++|+.|++.|+|++|||||+++|+|||++||||||+.|+|+||+||+|||+|||++||+|+++||++|+.        
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~--------   73 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN--------   73 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH--------
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHH--------
Confidence            468999999999999999999999999999999999999999999999999999999999999999999998        


Q ss_pred             cccccchHHHHHHHhhcCCCC--------CChHHHHHHHHHHhhhCccccC
Q 009702           95 LYTAMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR  137 (528)
Q Consensus        95 Ll~~gGN~kAN~iwEa~LPps--------sD~~~re~FIRaKY~eKrF~~~  137 (528)
                          +||..+|++||+++|..        .+...+++||++||++|+|+.+
T Consensus        74 ----~GN~~~n~~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k  120 (122)
T d1dcqa2          74 ----IGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK  120 (122)
T ss_dssp             ----SCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred             ----HhHHHHHHHHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCccccc
Confidence                99999999999988632        2445789999999999999965
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure