Citrus Sinensis ID: 009714

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
MMAKDFYGGSDSSNWCSSASARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHRVAVAEAQ
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccEEEcccccccccccHHHHHHHHHHHEEEccHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccHHHcc
ccccccccccccHHHHHHHHHHHHHcHEEEEcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccc
mmakdfyggsdssnwcssasarllapeyslspvpwlatpvQVRVTISFLLAGAASVLNALCYAELasrfpavvGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELfpffkenipswighggeeflggtlsiNILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAfevdvsnwspfapngfkeiLTGATVVFFAYVGFDavansaeeskkpqrdlpigiLGSLLICAALYVGVSLVLtgmvpykfldedaplsdafASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYlglgrdgllpsifakvhpkrhtpvhsQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRwkdrtsrndssrltSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLrhgysdppgfscpgvpllpavSIFFNLFLFAQLHYEAWWRFVILSFISIGLYafygqyhadpssdtiVYHRVAVAEAQ
mmakdfyggsdssnWCSSASARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALrwkdrtsrndssrltsawRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHRVAVAEAQ
MMAKDFYGGsdssnwcssasARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTlsinilapillalltivlCWGVGESSVLNSCMTvvkviivivviFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFgavagltttllvglYVQSrlylglgrdgllPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYillivavviavlaSAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHRVAVAEAQ
**************WCSSASARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVA************LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRT******RLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHRVAV****
********GSDSSNWCSSASARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQ*********************
*************NWCSSASARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVAN********QRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR*********TSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHRVAVAEAQ
*****FYGGSDSSNWCSSASARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDT************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
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MMAKDFYGGSDSSNWCSSASARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHRVAVAEAQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query528 2.2.26 [Sep-21-2011]
Q9C5D6569 Cationic amino acid trans yes no 0.912 0.847 0.720 0.0
Q8W4K3600 Cationic amino acid trans no no 0.859 0.756 0.328 1e-72
Q797A7461 Uncharacterized amino aci yes no 0.642 0.735 0.423 2e-65
Q09143622 High affinity cationic am yes no 0.869 0.737 0.318 4e-61
P30823624 High affinity cationic am yes no 0.869 0.735 0.317 7e-61
Q9ASS7635 Cationic amino acid trans no no 0.640 0.532 0.376 1e-58
B3TP03654 Low affinity cationic ami no no 0.859 0.694 0.313 3e-57
Q84MA5594 Cationic amino acid trans no no 0.890 0.791 0.290 1e-56
Q8GYB4609 Cationic amino acid trans no no 0.636 0.551 0.372 3e-56
P30825629 High affinity cationic am yes no 0.871 0.731 0.315 4e-56
>sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis thaliana GN=CAT9 PE=2 SV=1 Back     alignment and function desciption
 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/487 (72%), Positives = 420/487 (86%), Gaps = 5/487 (1%)

Query: 44  VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 103
           VTISFLLAGA+ VLNALCYAEL+SRFPAVVGGAY+Y+Y+AFNE+TAFLVF QLMLDYHIG
Sbjct: 85  VTISFLLAGASCVLNALCYAELSSRFPAVVGGAYMYSYSAFNEITAFLVFVQLMLDYHIG 144

Query: 104 AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 163
           AASI+RSLASY V++LELFP  K +IP W+G G +E LGG LS+NILAPILLALLT+VLC
Sbjct: 145 AASISRSLASYAVALLELFPALKGSIPLWMGSG-KELLGGLLSLNILAPILLALLTLVLC 203

Query: 164 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYV 223
            GV ESS +NS MT  KV+IV+VVI AGAFE+DV+NWSPFAPNGFK +LTGATVVFF+YV
Sbjct: 204 QGVRESSAVNSVMTATKVVIVLVVICAGAFEIDVANWSPFAPNGFKAVLTGATVVFFSYV 263

Query: 224 GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF 283
           GFDAVANSAEESK PQRDLPIGI+GSLL+C +LY+GV LVLTGMVP+  L EDAPL++AF
Sbjct: 264 GFDAVANSAEESKNPQRDLPIGIMGSLLVCISLYIGVCLVLTGMVPFSLLSEDAPLAEAF 323

Query: 284 ASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVH 343
           +S+G+K+VS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIF+++HP  HTP+H
Sbjct: 324 SSKGMKFVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFSRIHPTLHTPLH 383

Query: 344 SQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSA 403
           SQ+W GIVAG+LAG+FNV  LSHILSVGTLTGYSVV+ACV+ALR  D+  R  S+R TS+
Sbjct: 384 SQIWCGIVAGVLAGIFNVHSLSHILSVGTLTGYSVVAACVVALRLNDKKDRESSNRWTSS 443

Query: 404 WRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDP--PGFS 461
           W++GVICL+IIAC GFGAG+FYR +AS I ++++V +AV+ASA+L  R  Y+ P   GFS
Sbjct: 444 WQEGVICLVIIACSGFGAGVFYRFSASVIFILLSVGVAVVASAVLHYRQAYALPLGSGFS 503

Query: 462 CPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHR 521
           CPGVP++P+V IFFN+FLFAQLHYEAW RFV++S ++  +YA YGQYHADPS   + Y R
Sbjct: 504 CPGVPIVPSVCIFFNIFLFAQLHYEAWIRFVVVSVLATAVYALYGQYHADPS--MLDYQR 561

Query: 522 VAVAEAQ 528
               E+ 
Sbjct: 562 APETESD 568
Permease involved in the transport of the cationic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 Back     alignment and function description
>sp|Q797A7|YFNA_BACSU Uncharacterized amino acid permease YfnA OS=Bacillus subtilis (strain 168) GN=yfnA PE=3 SV=1 Back     alignment and function description
>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 Back     alignment and function description
>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1 Back     alignment and function description
>sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1 Back     alignment and function description
>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 Back     alignment and function description
>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query528
297734594600 unnamed protein product [Vitis vinifera] 0.918 0.808 0.798 0.0
359489192574 PREDICTED: uncharacterized amino acid pe 0.918 0.844 0.798 0.0
147792568623 hypothetical protein VITISV_020825 [Viti 0.918 0.778 0.762 0.0
356531810558 PREDICTED: uncharacterized amino acid pe 0.907 0.858 0.776 0.0
255541076568 cationic amino acid transporter, putativ 0.916 0.852 0.787 0.0
356567014560 PREDICTED: uncharacterized amino acid pe 0.907 0.855 0.766 0.0
224067463577 cationic amino acid transporter [Populus 0.905 0.828 0.785 0.0
293335719602 yfnA [Zea mays] gi|223947173|gb|ACN27670 0.905 0.794 0.715 0.0
115447681605 Os02g0655700 [Oryza sativa Japonica Grou 0.905 0.790 0.733 0.0
18390592569 cationic amino acid transporter 9 [Arabi 0.912 0.847 0.720 0.0
>gi|297734594|emb|CBI16645.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/487 (79%), Positives = 432/487 (88%), Gaps = 2/487 (0%)

Query: 44  VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 103
           VTISF+LAGA+ VLNALCYAELASRFPAVVGGAYLY YTAFNELTAFLVFAQLMLDYHIG
Sbjct: 114 VTISFILAGASCVLNALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFAQLMLDYHIG 173

Query: 104 AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 163
           AASIARSLASYVV++LELFPFFKENIPSWIGHGGEEFLGG LSINILAPILL LLTI+LC
Sbjct: 174 AASIARSLASYVVAVLELFPFFKENIPSWIGHGGEEFLGGALSINILAPILLVLLTIILC 233

Query: 164 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYV 223
            GVGESS +N  MTV KV+IV+ VI  GAF+VDVSNWSPFAPNGF+ ILTGATVVFFAYV
Sbjct: 234 RGVGESSAVNCFMTVTKVVIVLFVIIVGAFKVDVSNWSPFAPNGFEAILTGATVVFFAYV 293

Query: 224 GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF 283
           GFDAVANSAEESK+PQRDLPI I+GSLL+C  LY+GV LV+TGMVPYK L EDAPL++AF
Sbjct: 294 GFDAVANSAEESKRPQRDLPIAIMGSLLVCVVLYIGVCLVITGMVPYKLLGEDAPLAEAF 353

Query: 284 ASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVH 343
            S+GLKYVS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS+FA+VHPK HTPVH
Sbjct: 354 TSKGLKYVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSLFARVHPKAHTPVH 413

Query: 344 SQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSA 403
           SQ+WVGIVA ILAGLFN+  LSHILSVG+LTGYSVV+ACV+ LRW D+T+   S+R TS 
Sbjct: 414 SQIWVGIVASILAGLFNIHALSHILSVGSLTGYSVVAACVVTLRWNDKTASQVSTRWTST 473

Query: 404 WRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCP 463
           W++GVI LIIIA CGF AGLFYR+ AS+  L+VA VIAVLAS  L  R  Y +PPGFSCP
Sbjct: 474 WQEGVIYLIIIAGCGFSAGLFYRVGASFFCLLVAAVIAVLASIALYSRQVYMNPPGFSCP 533

Query: 464 GVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADP--SSDTIVYHR 521
           GVP++PAV IFFN+FLFAQLHYEAW RFVILS ISIG+YAFYGQYHADP  S++TI+YHR
Sbjct: 534 GVPIVPAVCIFFNIFLFAQLHYEAWVRFVILSLISIGIYAFYGQYHADPLSSNETIIYHR 593

Query: 522 VAVAEAQ 528
             + E Q
Sbjct: 594 APIEEGQ 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359489192|ref|XP_002272634.2| PREDICTED: uncharacterized amino acid permease YhdG-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147792568|emb|CAN66397.1| hypothetical protein VITISV_020825 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531810|ref|XP_003534469.1| PREDICTED: uncharacterized amino acid permease YhdG-like [Glycine max] Back     alignment and taxonomy information
>gi|255541076|ref|XP_002511602.1| cationic amino acid transporter, putative [Ricinus communis] gi|223548782|gb|EEF50271.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356567014|ref|XP_003551718.1| PREDICTED: uncharacterized amino acid permease YhdG-like [Glycine max] Back     alignment and taxonomy information
>gi|224067463|ref|XP_002302490.1| cationic amino acid transporter [Populus trichocarpa] gi|222844216|gb|EEE81763.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|293335719|ref|NP_001168279.1| yfnA [Zea mays] gi|223947173|gb|ACN27670.1| unknown [Zea mays] gi|413938074|gb|AFW72625.1| yfnA [Zea mays] Back     alignment and taxonomy information
>gi|115447681|ref|NP_001047620.1| Os02g0655700 [Oryza sativa Japonica Group] gi|49388207|dbj|BAD25330.1| amino acid permease-like [Oryza sativa Japonica Group] gi|49388552|dbj|BAD25671.1| amino acid permease-like [Oryza sativa Japonica Group] gi|113537151|dbj|BAF09534.1| Os02g0655700 [Oryza sativa Japonica Group] gi|218191293|gb|EEC73720.1| hypothetical protein OsI_08327 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|18390592|ref|NP_563754.1| cationic amino acid transporter 9 [Arabidopsis thaliana] gi|75308782|sp|Q9C5D6.1|CAAT9_ARATH RecName: Full=Cationic amino acid transporter 9, chloroplastic; Flags: Precursor gi|13430818|gb|AAK26031.1|AF360321_1 unknown protein [Arabidopsis thaliana] gi|21280891|gb|AAM44938.1| unknown protein [Arabidopsis thaliana] gi|332189800|gb|AEE27921.1| cationic amino acid transporter 9 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query528
TAIR|locus:2198861569 CAT9 "cationic amino acid tran 0.910 0.845 0.611 7e-157
DICTYBASE|DDB_G0279983 766 ctrB "solute carrier family 7 0.660 0.455 0.341 4.9e-60
TAIR|locus:2167462609 CAT3 "cationic amino acid tran 0.638 0.553 0.323 5.4e-57
UNIPROTKB|F1P388624 SLC7A1 "Uncharacterized protei 0.354 0.299 0.390 2.2e-56
UNIPROTKB|F1N5P6629 SLC7A1 "Uncharacterized protei 0.354 0.297 0.358 1.5e-55
DICTYBASE|DDB_G0291201546 ctrC "solute carrier family 7 0.882 0.853 0.292 1.6e-54
UNIPROTKB|P70608624 Slc7a1 "High affinity cationic 0.354 0.299 0.363 2.7e-54
RGD|3716624 Slc7a1 "solute carrier family 0.354 0.299 0.363 2.7e-54
TAIR|locus:2196245635 CAT2 "cationic amino acid tran 0.640 0.532 0.316 2.9e-54
UNIPROTKB|G3MV65622 Slc7a1 "Solute carrier family 0.354 0.300 0.363 6.9e-54
TAIR|locus:2198861 CAT9 "cationic amino acid transporter 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
 Identities = 297/486 (61%), Positives = 356/486 (73%)

Query:    44 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 103
             VTISFLLAGA+ VLNALCYAEL+SRFPAVVGGAY+Y+Y+AFNE+TAFLVF QLMLDYHIG
Sbjct:    85 VTISFLLAGASCVLNALCYAELSSRFPAVVGGAYMYSYSAFNEITAFLVFVQLMLDYHIG 144

Query:   104 AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTXXXXXXXXXXXXXXXXXXC 163
             AASI+RSLASY V++LELFP  K +IP W+G  G+E LGG                   C
Sbjct:   145 AASISRSLASYAVALLELFPALKGSIPLWMG-SGKELLGGLLSLNILAPILLALLTLVLC 203

Query:   164 WGVGESSVLNSCMTXXXXXXXXXXXFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYV 223
              GV ESS +NS MT            AGAFE+DV+NWSPFAPNGFK +LTGATVVFF+YV
Sbjct:   204 QGVRESSAVNSVMTATKVVIVLVVICAGAFEIDVANWSPFAPNGFKAVLTGATVVFFSYV 263

Query:   224 GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF 283
             GFDAVANSAEESK PQRDLPIGI+GSLL+C +LY+GV LVLTGMVP+  L EDAPL++AF
Sbjct:   264 GFDAVANSAEESKNPQRDLPIGIMGSLLVCISLYIGVCLVLTGMVPFSLLSEDAPLAEAF 323

Query:   284 ASRGLKYVSVLISFXXXXXXXXXXXXXXYVQSXXXXXXXXXXXXPSIFAKVHPKRHTPVH 343
             +S+G+K+VS+LIS               YVQS            PSIF+++HP  HTP+H
Sbjct:   324 SSKGMKFVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFSRIHPTLHTPLH 383

Query:   344 SQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSA 403
             SQ+W GIVAG+LAG+FNV  LSHILSVGTLTGYSVV+ACV+ALR  D+  R  S+R TS+
Sbjct:   384 SQIWCGIVAGVLAGIFNVHSLSHILSVGTLTGYSVVAACVVALRLNDKKDRESSNRWTSS 443

Query:   404 WRQGVICLIIIACCGFGAGLFYRINASYXXXXXXXXXXXXXSAMLCLRHGYSDP--PGFS 461
             W++GVICL+IIAC GFGAG+FYR +AS              SA+L  R  Y+ P   GFS
Sbjct:   444 WQEGVICLVIIACSGFGAGVFYRFSASVIFILLSVGVAVVASAVLHYRQAYALPLGSGFS 503

Query:   462 CPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHR 521
             CPGVP++P+V IFFN+FLFAQLHYEAW RFV++S ++  +YA YGQYHADPS   + Y R
Sbjct:   504 CPGVPIVPSVCIFFNIFLFAQLHYEAWIRFVVVSVLATAVYALYGQYHADPSM--LDYQR 561

Query:   522 VAVAEA 527
                 E+
Sbjct:   562 APETES 567
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P388 SLC7A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5P6 SLC7A1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291201 ctrC "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P70608 Slc7a1 "High affinity cationic amino acid transporter 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|3716 Slc7a1 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2196245 CAT2 "cationic amino acid transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G3MV65 Slc7a1 "Solute carrier family 7 member 1" [Mus musculus musculus (taxid:39442)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C5D6CAAT9_ARATHNo assigned EC number0.72070.91280.8471yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 1e-93
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 2e-69
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 4e-47
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 8e-28
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 1e-21
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 7e-20
pfam00324473 pfam00324, AA_permease, Amino acid permease 1e-19
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 4e-18
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 2e-14
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 2e-14
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 3e-14
pfam1390651 pfam13906, AA_permease_C, C-terminus of AA_permeas 2e-12
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 2e-11
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 3e-11
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 1e-10
PRK10655438 PRK10655, potE, putrescine transporter; Provisiona 5e-10
TIGR04299430 TIGR04299, antiport_PotE, putrescine-ornithine ant 2e-09
PRK10836489 PRK10836, PRK10836, lysine transporter; Provisiona 5e-09
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 5e-09
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 2e-08
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 1e-07
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 3e-07
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 8e-07
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 1e-06
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 2e-05
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 2e-05
PRK10580457 PRK10580, proY, putative proline-specific permease 4e-05
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 4e-05
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 2e-04
PRK10435435 PRK10435, cadB, lysine/cadaverine antiporter; Prov 4e-04
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 5e-04
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 0.001
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  295 bits (758), Expect = 1e-93
 Identities = 171/499 (34%), Positives = 264/499 (52%), Gaps = 39/499 (7%)

Query: 44  VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 103
           + +SFL++G A+VL+  CYAE  +R P   G AYLY+Y    EL AF+    L+L+Y IG
Sbjct: 64  IVLSFLISGLAAVLSGFCYAEFGARVP-KAGSAYLYSYVTVGELWAFITGWNLILEYVIG 122

Query: 104 AASIARSLASYVVSILELFPFFKENIPSW-IGHGGEEFLGGTLSINILAPILLALLTIVL 162
            A++ARS ++Y   +L       + I  +   +    + G     +  A  L+ LL ++L
Sbjct: 123 TAAVARSWSAYFDELL------NKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLL 176

Query: 163 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP--------FAPNGFKEILTG 214
            +GV ES+ +N   T + +++++ VI AG  + DV+NWS         F P GF  +L+G
Sbjct: 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSG 236

Query: 215 ATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD 274
           A   FFA++GFDA+A + EE K PQR +PIGI+ SLL+C   Y  +S  LT M+PY  LD
Sbjct: 237 AATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLD 296

Query: 275 EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKV 334
            DAP   AF   G      +++ GA+ G++T+LL G++   R+   + RDGLL    A++
Sbjct: 297 PDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQI 356

Query: 335 HPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWK----- 389
           + K  TP+++ V  G +A ++A LF+++ L  +LS+GTL  YS+V+ACV+ LR++     
Sbjct: 357 NSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVY 416

Query: 390 -------DRTSRNDSSRLTSAW---------RQGVICLIIIACC--GFGAGLFYRINASY 431
                  ++ + +     TS           R     LI+       +G         S 
Sbjct: 417 GQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSI 476

Query: 432 ILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRF 491
            LL + +V+ +L    +  +        F  P VP LPA+SI  N+FL  QL  + W RF
Sbjct: 477 ALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRF 536

Query: 492 VILSFISIGLYAFYGQYHA 510
            I   I   +Y  YG  H+
Sbjct: 537 AIWMAIGFLIYFLYGIRHS 555

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional Back     alignment and domain information
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 528
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
PRK10836489 lysine transporter; Provisional 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
PRK11021410 putative transporter; Provisional 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.96
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.92
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.89
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.88
PHA02764399 hypothetical protein; Provisional 99.83
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.82
KOG2083643 consensus Na+/K+ symporter [Inorganic ion transpor 99.79
TIGR00814397 stp serine transporter. The HAAAP family includes 99.72
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.68
PRK15132403 tyrosine transporter TyrP; Provisional 99.58
PRK09664415 tryptophan permease TnaB; Provisional 99.57
PRK10483414 tryptophan permease; Provisional 99.55
PF03845320 Spore_permease: Spore germination protein; InterPr 99.52
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.49
PRK13629443 threonine/serine transporter TdcC; Provisional 99.36
PF1390651 AA_permease_C: C-terminus of AA_permease 99.19
COG3949349 Uncharacterized membrane protein [Function unknown 98.91
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.86
PRK11375484 allantoin permease; Provisional 98.7
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.68
PLN03074473 auxin influx permease; Provisional 98.68
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 98.51
COG1457442 CodB Purine-cytosine permease and related proteins 98.47
KOG1303437 consensus Amino acid transporters [Amino acid tran 98.44
PTZ00206467 amino acid transporter; Provisional 98.33
KOG1304449 consensus Amino acid transporters [Amino acid tran 98.33
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.27
PRK11017404 codB cytosine permease; Provisional 98.11
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.1
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.94
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.89
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.84
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 97.8
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.69
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.68
PRK15433439 branched-chain amino acid transport system 2 carri 97.53
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 97.51
PRK00701439 manganese transport protein MntH; Reviewed 97.5
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.42
TIGR00813407 sss transporter, SSS family. have different number 97.39
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.3
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 96.91
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 96.75
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.65
KOG1305411 consensus Amino acid transporter protein [Amino ac 96.53
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 96.39
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.3
PRK15419502 proline:sodium symporter PutP; Provisional 96.22
PLN00149 779 potassium transporter; Provisional 96.16
PRK10484523 putative transporter; Provisional 96.02
COG4147529 DhlC Predicted symporter [General function predict 95.8
PRK10745622 trkD potassium transport protein Kup; Provisional 95.8
COG0591493 PutP Na+/proline symporter [Amino acid transport a 95.75
PRK12488549 acetate permease; Provisional 95.74
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 95.7
PLN00148 785 potassium transporter; Provisional 95.39
PLN00151 852 potassium transporter; Provisional 95.21
PLN00150 779 potassium ion transporter family protein; Provisio 95.18
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 95.07
PRK09950506 putative transporter; Provisional 95.06
PRK09928679 choline transport protein BetT; Provisional 94.56
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 92.57
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 92.54
TIGR00842453 bcct choline/carnitine/betaine transport. properti 92.05
PRK15238496 inner membrane transporter YjeM; Provisional 91.53
PRK09395551 actP acetate permease; Provisional 91.09
KOG1286554 consensus Amino acid transporters [Amino acid tran 90.82
COG3158627 Kup K+ transporter [Inorganic ion transport and me 88.95
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 87.28
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 83.44
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=1.5e-61  Score=513.79  Aligned_cols=469  Identities=35%  Similarity=0.609  Sum_probs=379.3

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714           37 ATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVV  116 (528)
Q Consensus        37 ~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~  116 (528)
                      .+.+||+++++|+++++.+++.+++|+|+++++|+ +||.|.|+++.+||.+||++||.++++|....+..+..++.|+.
T Consensus        57 ~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~-sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~  135 (557)
T TIGR00906        57 RNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPK-AGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFD  135 (557)
T ss_pred             HhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999 99999999999999999999999999999999999999999998


Q ss_pred             HHHhh-cccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009714          117 SILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV  195 (528)
Q Consensus       117 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~  195 (528)
                      .+++. ...+...   ..... ++..  .....+++.+++++.+.+|.+|+|..+++|++++.+|++.++++++.++.+.
T Consensus       136 ~ll~~~~~~~~~~---~~~~~-~~~l--~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~  209 (557)
T TIGR00906       136 ELLNKQIGQFRRT---YFKLN-YDGL--AEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKA  209 (557)
T ss_pred             HHHhhhccccccc---ccccc-CCcc--cccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhC
Confidence            87652 1111100   00000 0000  1123456777888889999999999999999999999999999999988877


Q ss_pred             cccCCC--------CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009714          196 DVSNWS--------PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM  267 (528)
Q Consensus       196 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~  267 (528)
                      +.+||.        ++.|.++.+++.+...++|+|.|||.+++++||+|||+||+||++..++++++++|++.+++..+.
T Consensus       210 ~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~  289 (557)
T TIGR00906       210 DVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLM  289 (557)
T ss_pred             CchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            777776        677888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHH
Q 009714          268 VPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVW  347 (528)
Q Consensus       268 ~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~  347 (528)
                      .|++++++++|+.++++..+.++...++.++.+++.+++.++.+++.+|++++|||||.+|++|+|+|||+++|++|+++
T Consensus       290 vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~  369 (557)
T TIGR00906       290 MPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVV  369 (557)
T ss_pred             ccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHH
Confidence            99998888899999999888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcc-------------------cccc-cchhh
Q 009714          348 VGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSS-------------------RLTS-AWRQG  407 (528)
Q Consensus       348 ~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~-------------------~~~~-~~~~~  407 (528)
                      .++++.++.++.+.+.+.++.+++.++.|.+++.+++++|++++...+++.                   ...+ .....
T Consensus       370 ~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (557)
T TIGR00906       370 SGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRT  449 (557)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHH
Confidence            999998888888999999999999999999999999999987632211110                   0000 00001


Q ss_pred             HHHHHHHHHhhhhcchhh--ccchhHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCCCccchhHHHHHHHHHHHHhcCC
Q 009714          408 VICLIIIACCGFGAGLFY--RINASYILLIVAVVIAVLASAMLCLRHGY-SDPPGFSCPGVPLLPAVSIFFNLFLFAQLH  484 (528)
Q Consensus       408 i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~  484 (528)
                      ..+...+..+........  ..+++...+.+..++..+......++|++ +.+++||+|..|++|+++++.|++++.+++
T Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~  529 (557)
T TIGR00906       450 LFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLD  529 (557)
T ss_pred             HHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcCC
Confidence            112222222211111111  11222222222222222333333344433 348899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccCC
Q 009714          485 YEAWWRFVILSFISIGLYAFYGQYHADP  512 (528)
Q Consensus       485 ~~~~~~~~~~~~~g~~~y~~~~~~~~~~  512 (528)
                      ..+|..+.+|+++|+++|+.|++||+++
T Consensus       530 ~~~~~~~~~w~~~g~~~y~~yg~~~s~~  557 (557)
T TIGR00906       530 ADTWVRFAIWMAIGFLIYFLYGIRHSLE  557 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence            9999999999999999999999999874

>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
3ncy_A445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 4e-07
3ob6_A445 Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo 1e-06
3lrb_A445 Structure Of E. Coli Adic Length = 445 1e-06
3l1l_A445 Structure Of Arg-Bound Escherichia Coli Adic Length 1e-06
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 1e-05
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 1e-05
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 2/162 (1%)
Query: 194 EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLIC 253
           E  ++ W+    N F  I +   V  ++++G ++ + +A   K P+R++PI  +G +LI 
Sbjct: 176 ETYMAAWNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235
Query: 254 AALYVGVSLVLTGMVPYKFLDEDA-PLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXY 312
           A  YV  +  + GM+P   L   A P  DA           ++SF               
Sbjct: 236 AVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTL 295
Query: 313 VQSXXXXXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGI 354
           +              P IFA+V+ K  TPV   + VG++  I
Sbjct: 296 LAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTI 336
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 Back     alignment and structure
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-104
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 5e-07
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 6e-69
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 5e-61
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  320 bits (821), Expect = e-104
 Identities = 77/405 (19%), Positives = 157/405 (38%), Gaps = 36/405 (8%)

Query: 44  VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE-LTAFLVFAQLMLDYHI 102
           +  +F+L+G  ++L A  Y +L ++      G   + + A  + +    +   L + Y I
Sbjct: 41  LPETFILSGIYALLVAYSYTKLGAKIV-SNAGPIAFIHKAIGDNIITGALSILLWMSYVI 99

Query: 103 GAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 162
             A  A+  A Y + ++                        T +I I    ++A  T + 
Sbjct: 100 SIALFAKGFAGYFLPLINAP-------------------INTFNIAITEIGIVAFFTALN 140

Query: 163 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFA 221
            +G          + +VK++I+ + IFAG   +  S   P  AP+    ++  + + F +
Sbjct: 141 FFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLS 200

Query: 222 YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPL 279
           Y+GF  + N++E  + P++++P  I  S+LI   +YVGV++   G +P   L    +  L
Sbjct: 201 YMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENAL 260

Query: 280 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRH 339
           + A          +LIS GA+  +++ +   +Y  + +   L +DG LP  F +      
Sbjct: 261 AVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWF-- 318

Query: 340 TPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSR 399
                      +  + A LFN+  ++ I S   +  Y  V      L  +    +     
Sbjct: 319 KSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIV-- 376

Query: 400 LTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLA 444
                    I ++ +         +  I   ++   +      + 
Sbjct: 377 -----IFSFIVVLGVFLLLL---YYQWITNRFVFYGIIATFIGVL 413
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query528
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.7
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.0
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.72
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 95.23
4ain_A539 Glycine betaine transporter BETP; membrane protein 83.96
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=5.8e-49  Score=410.70  Aligned_cols=388  Identities=20%  Similarity=0.302  Sum_probs=331.8

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714           38 TPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVS  117 (528)
Q Consensus        38 ~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~  117 (528)
                      ..+||.++++|+++++++++.+++|+|+++++|+ +||.|+|++|.+||.+|+..+|.+++++....+..+...++++..
T Consensus        36 ~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  114 (445)
T 3l1l_A           36 ASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSY  114 (445)
T ss_dssp             HHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478889999999999999999999999999999 999999999999999999999999999988888888888777654


Q ss_pred             HHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 009714          118 ILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV  197 (528)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~  197 (528)
                      ++   |..                ..+....+++++++++.+.+|++|+|..++++.+.+.++++.++++++.++.+.+.
T Consensus       115 ~~---~~~----------------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~  175 (445)
T 3l1l_A          115 FF---PIL----------------KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG  175 (445)
T ss_dssp             TC---GGG----------------GSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCC
T ss_pred             HC---ccc----------------cccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            32   111                11234456888889999999999999999999999999999999888888877666


Q ss_pred             cCCC-CCCCCC---hHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 009714          198 SNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFL  273 (528)
Q Consensus       198 ~~~~-~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~  273 (528)
                      +++. ++.+.+   +.++..++...+|+|.|+|.+++++||+|||+|++||++..+..++.++|++..+......|++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~  255 (445)
T 3l1l_A          176 ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAAL  255 (445)
T ss_dssp             CCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred             hhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            5543 333333   557889999999999999999999999999999999999999999999999999999999998876


Q ss_pred             -CCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHH
Q 009714          274 -DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVA  352 (528)
Q Consensus       274 -~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~  352 (528)
                       ++++|+.++++...+++...++.+..+++.+++.++.+++.+|.+++|||||.+|++|+|+| |+++|+++++++.+++
T Consensus       256 ~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~  334 (445)
T 3l1l_A          256 RVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILM  334 (445)
T ss_dssp             CSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHH
Confidence             45689999999998888889999999999999999999999999999999999999999999 6799999999999887


Q ss_pred             HHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhhcchhh
Q 009714          353 GILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFY  425 (528)
Q Consensus       353 ~~~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  425 (528)
                      .++.+..       .++.+.++.++..++.|.+.+++.+++|+|+| +                                
T Consensus       335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~--------------------------------  381 (445)
T 3l1l_A          335 TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-G--------------------------------  381 (445)
T ss_dssp             HHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-G--------------------------------
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c--------------------------------
Confidence            7766542       35788999999999999999999999987765 2                                


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh
Q 009714          426 RINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFY  505 (528)
Q Consensus       426 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~  505 (528)
                                                     +   |.|..++++.++.+.+++.+...++.++....+++++|+.+|..+
T Consensus       382 -------------------------------~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~  427 (445)
T 3l1l_A          382 -------------------------------K---ARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALN  427 (445)
T ss_dssp             -------------------------------G---GCTTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------c---ccchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence                                           1   224557889999999999988889999999999999999999977


Q ss_pred             cccccCCC
Q 009714          506 GQYHADPS  513 (528)
Q Consensus       506 ~~~~~~~~  513 (528)
                      ++|++++.
T Consensus       428 ~~~~~~~~  435 (445)
T 3l1l_A          428 YNRLHKNP  435 (445)
T ss_dssp             HSTTCCCS
T ss_pred             hhhcccCc
Confidence            66655443
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query528
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 90.66
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.66  E-value=7.8  Score=37.36  Aligned_cols=39  Identities=23%  Similarity=0.427  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhh-hhhHHHhhhhhhhcCCCCchhHHHHHH
Q 009714          210 EILTGATVVFFAY-VGFDAVANSAEESKKPQRDLPIGILGS  249 (528)
Q Consensus       210 ~~~~~~~~~~~~f-~G~e~~~~~a~E~k~p~k~ip~ai~~s  249 (528)
                      -+..+...++|++ .|+-....++.-.|+ +.|+.|-....
T Consensus       239 vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~~v  278 (509)
T d2a65a1         239 VWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTA  278 (509)
T ss_dssp             HHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccceEE
Confidence            3456666777777 566666666665554 35566644333