Citrus Sinensis ID: 009720
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 527 | 2.2.26 [Sep-21-2011] | |||||||
| Q00081 | 470 | Glucose-1-phosphate adeny | N/A | no | 0.889 | 0.997 | 0.791 | 0.0 | |
| P55231 | 521 | Glucose-1-phosphate adeny | yes | no | 0.986 | 0.998 | 0.719 | 0.0 | |
| Q9SIK1 | 523 | Probable glucose-1-phosph | no | no | 0.944 | 0.952 | 0.735 | 0.0 | |
| P55233 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.979 | 0.988 | 0.651 | 0.0 | |
| P55230 | 518 | Glucose-1-phosphate adeny | no | no | 0.981 | 0.998 | 0.643 | 0.0 | |
| P55242 | 519 | Glucose-1-phosphate adeny | N/A | no | 0.981 | 0.996 | 0.644 | 0.0 | |
| P12299 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.874 | 0.883 | 0.668 | 0.0 | |
| P30524 | 523 | Glucose-1-phosphate adeny | N/A | no | 0.874 | 0.881 | 0.666 | 0.0 | |
| P55229 | 522 | Glucose-1-phosphate adeny | no | no | 0.840 | 0.848 | 0.674 | 0.0 | |
| P55243 | 483 | Glucose-1-phosphate adeny | N/A | no | 0.907 | 0.989 | 0.629 | 1e-179 |
| >sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/469 (79%), Positives = 422/469 (89%)
Query: 59 KVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
K+KPGVAY+V+T+++ + + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATP
Sbjct: 2 KIKPGVAYSVITTENDTQTVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATP 61
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVL 178
AVPV GCYRLIDIPMSNCINS INKIFVLTQ+NSA LNRHIARTYFGNG +FGDGFVEVL
Sbjct: 62 AVPVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAPLNRHIARTYFGNGVSFGDGFVEVL 121
Query: 179 AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238
AATQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+
Sbjct: 122 AATQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHI 181
Query: 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298
DR+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G +LKAMQVDT+L+G SPQ+
Sbjct: 182 DRNADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQD 241
Query: 299 ARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDI 358
A+K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDI
Sbjct: 242 AKKSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDI 301
Query: 359 GTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC 418
GTIKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+C
Sbjct: 302 GTIKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDC 361
Query: 419 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 478
+VEHSIVGERSRLD GVELKDT M+GADYYQTESEIASLLAEGKVPIG+G NTKIR CII
Sbjct: 362 SVEHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCII 421
Query: 479 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
DKN KIGK+V I+NKD VQEADRPE GFYIRSGI II+EKATI DG VI
Sbjct: 422 DKNAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIILEKATIRDGTVI 470
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/528 (71%), Positives = 434/528 (82%), Gaps = 8/528 (1%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEK 59
MDSCC T V A K K +N GE+I+GSV K L ++K R+ K
Sbjct: 1 MDSCC-NFSLGTKTVLA-KDSFKNVENKFLGEKIKGSV-----LKPFSSDLSSKKFRNRK 53
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
++PGVAYA+ TSK+ E + P ERRR DPKNVAAIILGGG G KLFPLT RAATPA
Sbjct: 54 LRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPA 113
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYR+IDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVEVLA
Sbjct: 114 VPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVEVLA 173
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q HVD
Sbjct: 174 ATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVD 233
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
ADIT+SCA V ESRAS+YGLV ID GR+ F+EKP+G +LK+MQ DT++ G S QEA
Sbjct: 234 SKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEA 293
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWEDIG
Sbjct: 294 AKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIG 353
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFYEAN+AL +E P F FYD TPFYTSPRFLPPTK + CRI +++ISHGCFL EC+
Sbjct: 354 TIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECS 413
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
++ SI+GERSRLDYGVEL+DT+MLGAD YQTESEIASLLAEG VPIG+GR+TKIR CIID
Sbjct: 414 IQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKCIID 473
Query: 480 KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
KN KIGK+VVI+NKDDV+EADRPE GFYIRSGIT+++EKATI+DG VI
Sbjct: 474 KNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/503 (73%), Positives = 430/503 (85%), Gaps = 5/503 (0%)
Query: 26 DNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPR 84
+N +GE+ +N+G K+ L ++K R++K K GV YAV TS +P + MT+
Sbjct: 25 ENRFYGEK----NNNNGLCKRFGSDLGSKKFRNQKFKHGVVYAVATSDNPKKAMTVKTSM 80
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
ERR+VDP+NVAAIILGGG G KLFPLT+RAATPAVPV GCYRLIDIPMSNCINS INKI
Sbjct: 81 FERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKI 140
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
FVLTQFNSASLNRH+ARTYFGNG NFG GFVEVLAATQTPGE+GK WFQGTADAVR+F W
Sbjct: 141 FVLTQFNSASLNRHLARTYFGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLW 200
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
VFEDAKNRNIEN+ IL GDHLYRM+YMDF+QSHVD +ADIT+SCA V ESRAS++GLVKI
Sbjct: 201 VFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKI 260
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D GR+ F+EKP+G +LK+MQ DT++LG S QEA PY+ASMGVY FK + L LL
Sbjct: 261 DRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTR 320
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
+YP+SNDFGSE+IPAAI +HDVQ YIFRDYWEDIGTIK+FYEAN+AL +E P F FYDP+
Sbjct: 321 QYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPE 380
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
TPFYTSPRFLPPTK + CR+ D+IISHGCFLREC+V+ SI+GERSRLDYGVEL+DT+MLG
Sbjct: 381 TPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLG 440
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 504
ADYYQTESEIASLLAEGKVPIG+G++TKIR CIIDKN KIGK+V+I+NK DVQEADRPE
Sbjct: 441 ADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEE 500
Query: 505 GFYIRSGITIIMEKATIEDGMVI 527
GFYIRSGIT+I+EKATI+DG VI
Sbjct: 501 GFYIRSGITVIVEKATIQDGTVI 523
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/533 (65%), Positives = 423/533 (79%), Gaps = 17/533 (3%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSL-KAEKRDEK 59
MD+ + N H+ +++G GERI S+ K L+ + E +
Sbjct: 1 MDASAAAINVNAHL-------TEVGKKRFLGERISQSLKG----KDLRALFSRTESKGRN 49
Query: 60 V-KPGVAYAVMTS---KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRA 115
V KPGVA++V+TS + E + P E + DPKNVAAI+LGGGAGT+LFPLT R
Sbjct: 50 VNKPGVAFSVLTSDFNQSVKESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRR 109
Query: 116 ATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGF 174
A PAVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+ARTY FG+G NFGDGF
Sbjct: 110 AKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGF 169
Query: 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFI 234
VEV AATQTPGESGK WFQGTADAVRQF W FED+K++++E++ IL GDHLYRMDYM F
Sbjct: 170 VEVFAATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFW 229
Query: 235 QSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGF 294
Q H+D +ADIT+SC + +SRASDYGL+KID+ GRI FAEKP G++L AMQVDT++LG
Sbjct: 230 QKHIDTNADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGL 289
Query: 295 SPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDY 354
S EA PY+ASMGVYVF+ DVL +LL +YP+SNDFGSEIIP+A+ E +VQAY+F DY
Sbjct: 290 SDLEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDY 349
Query: 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCF 414
WEDIGTIKSF+++N+ALT++ P F FYDPKTPFYTS RFLPPTK+D C+I D+I+SHGCF
Sbjct: 350 WEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHGCF 409
Query: 415 LRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474
L+E +++HSIVG RSRL+ GVE +DT+M+GADYYQTESEIASLLAEGKVP+GVG+NTKI+
Sbjct: 410 LQESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIK 469
Query: 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
NCIIDKN KIGKDVVI N D V+EADRP GFYIRSGITII++ ATI+DG+VI
Sbjct: 470 NCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/528 (64%), Positives = 420/528 (79%), Gaps = 11/528 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
M+SC ++ N + +A WG ++ N T +L+ + + +K+
Sbjct: 1 MESCFPAMKLNQCTFGLNNEIVSERVSAFWGTQVVKP--NHLRTTKLRSAPQ-----KKI 53
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
+ + +V+T E P L + DPKNVA+IILGGGAGT+LFPLT + A PAV
Sbjct: 54 QTNLIRSVLTPFVDQESHE---PLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKPAV 110
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLA 179
P+ GCYRLIDIPMSNCINSGI KIF+LTQFNS SLNRH++RTY FGNG NFGDGFVEVLA
Sbjct: 111 PIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLA 170
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQT G++GK WFQGTADAVRQF WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q H++
Sbjct: 171 ATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIE 230
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
+ADIT+SC + ESRASD+GL+KID G+I QF+EKP G +LKAMQVDTS+LG P+EA
Sbjct: 231 SNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEA 290
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
+ PY+ASMGVYVF+K+VL KLLR YPTSNDFGSEIIP A+ EH+VQA++F DYWEDIG
Sbjct: 291 AESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIG 350
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TI SF++AN+ALT++ P F FYD KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLREC+
Sbjct: 351 TIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRECS 410
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
V+HSIVG RSRL+ GVEL+DT+M+GAD+YQTE+EIASLLAEGKVP+GVG+NTKI+NCIID
Sbjct: 411 VQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNCIID 470
Query: 480 KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
KN KIGK+VVI N D V+E DRPE GF+IRSGIT++++ ATI DG+ I
Sbjct: 471 KNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDGLHI 518
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/529 (64%), Positives = 405/529 (76%), Gaps = 12/529 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGS-VSNDGCTKQLKKSLKAEKRDEK 59
MD+ C ++ +V ++A WGE+I G + N G + KS ++R
Sbjct: 1 MDALCASMKGTAQLVAICNQ-----ESAFWGEKISGRRLINKGFGVRSCKSFTTQQRGRN 55
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERR-RVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
V P AV+T E++ E + DPK VA++ILGGG GT+LFPLT R A P
Sbjct: 56 VTP----AVLTRDINKEMLPFEESMFEEQPTADPKAVASVILGGGVGTRLFPLTSRRAKP 111
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVL 178
AVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+A FGNG FGDGFVEVL
Sbjct: 112 AVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLATYNFGNGVGFGDGFVEVL 171
Query: 179 AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238
A TQTPG+ K WFQ ADAVR+F WVFE+ KN+N+E++ IL GDHLYRM+YMDF+Q H+
Sbjct: 172 AGTQTPGDGRKMWFQA-ADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQKHI 230
Query: 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298
D +ADIT+SC + + RASD+GL+KID G I QFAEKP G LKAMQVDTS+LG S QE
Sbjct: 231 DTNADITVSCVPMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSILGLSEQE 290
Query: 299 ARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDI 358
A PY+ASMGVYVFK DVL LL+ YP+ NDFGSEIIP+A+ +H+VQAY+F DYWEDI
Sbjct: 291 ASNFPYIASMGVYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDI 350
Query: 359 GTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC 418
GT+KSF++AN+ALTK+ P F F DPKTPFYTS RFLPPTK+D RI DAIISHGCFLREC
Sbjct: 351 GTVKSFFDANLALTKQPPKFDFNDPKTPFYTSARFLPPTKVDKSRIVDAIISHGCFLREC 410
Query: 419 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 478
++HSIVG RSRLDYGVE KDT+M+GADYYQTE EIASLLAEGKVPIGVG NTKI+NCII
Sbjct: 411 NIQHSIVGVRSRLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPNTKIQNCII 470
Query: 479 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
DKN KIGKDVVI+NK+ V+EADR GFYIRSGIT+IM+ ATI+DG VI
Sbjct: 471 DKNAKIGKDVVILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/465 (66%), Positives = 373/465 (80%), Gaps = 4/465 (0%)
Query: 65 AYAVMTS-KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA 123
A V+TS P + + L R DP VAA+ILGGG GT+LFPLT ATPAVP+
Sbjct: 60 AQCVLTSDASPADTLVLRT-SFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIG 118
Query: 124 GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 183
GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ
Sbjct: 119 GCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQM 178
Query: 184 PGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDA 242
PGE+ WF+GTADAVR+F WV ED KN++IE++ IL GD LYRMDYM+ +Q HVD +A
Sbjct: 179 PGEAA-GWFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNA 237
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302
DIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+ + K
Sbjct: 238 DITLSCAPVGESRASEYGLVKFDSSGRVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKY 297
Query: 303 PYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIK 362
PY+ASMGVYVFK+DVL LL+ RY +DFGSEI+P A+ +H+VQAY+F DYWEDIGTI+
Sbjct: 298 PYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIR 357
Query: 363 SFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEH 422
SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFLREC +EH
Sbjct: 358 SFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEH 417
Query: 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482
SI+G RSRL+ G ELK+ +M+GAD Y+TE EI+ L++EGKVPIGVG NTKI NCIID N
Sbjct: 418 SIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNA 477
Query: 483 KIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
+IG+DVVI NK+ VQEADRPE G+YIRSGI +I + ATI+DG V+
Sbjct: 478 RIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2 | Back alignment and function description |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/465 (66%), Positives = 373/465 (80%), Gaps = 4/465 (0%)
Query: 65 AYAVMTS-KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA 123
A V+TS P + + L R DP VAA+ILGGG GT+LFPLT ATPAVP+
Sbjct: 61 AQCVLTSDASPADTLVLRT-SFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIG 119
Query: 124 GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 183
GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ
Sbjct: 120 GCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQM 179
Query: 184 PGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDA 242
PGE+ WF+GTADAVR+F WV ED K+++IE++ IL GD LYRMDYM+ +Q HVD +A
Sbjct: 180 PGEAA-GWFRGTADAVRKFIWVLEDYYKHKSIEHILILSGDQLYRMDYMELVQKHVDDNA 238
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302
DIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+ + K
Sbjct: 239 DITLSCAPVGESRASEYGLVKFDSSGRVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKY 298
Query: 303 PYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIK 362
PY+ASMGVYVFK+DVL LL+ RY +DFGSEI+P A+ +H+VQAY+F DYWEDIGTI+
Sbjct: 299 PYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIR 358
Query: 363 SFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEH 422
SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFLREC +EH
Sbjct: 359 SFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEH 418
Query: 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482
SI+G RSRL+ G ELK+ +M+GAD Y+TE EI+ L++EGKVPIGVG NTKI NCIID N
Sbjct: 419 SIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNA 478
Query: 483 KIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
+IG+DVVI NK+ VQEADRPE G+YIRSGI +I + ATI+DG V+
Sbjct: 479 RIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/443 (67%), Positives = 365/443 (82%)
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
LE + DP+ VA+IILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+
Sbjct: 80 LETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKV 139
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
++LTQ+NSASLNRH+AR Y NG FGDG+VEVLAATQTPGESGK WFQGTADAVRQF W
Sbjct: 140 YILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHW 199
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
+FEDA++++IE+V IL GDHLYRMDYMDFIQ H ADI+ISC + + RASD+GL+KI
Sbjct: 200 LFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKI 259
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D+ GR+ F+EKP G +LKAM VDT++LG S +EA K PY+ASMGVYVFKK++L LLRW
Sbjct: 260 DDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRW 319
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
R+PT+NDFGSEIIP + E V AY+F DYWEDIGTI+SF+EAN+ALT+ AF FYD
Sbjct: 320 RFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAA 379
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
P YTS R LPP+KIDN ++ D+IISHG FL C +EHSIVG RSR+ V+LKDTVMLG
Sbjct: 380 KPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLG 439
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 504
ADYY+TE+E+A+LLAEG VPIG+G NTKI+ CIIDKN ++GK+V+I N + +QEADR
Sbjct: 440 ADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSD 499
Query: 505 GFYIRSGITIIMEKATIEDGMVI 527
GFYIRSGIT+I++ + I+DG+VI
Sbjct: 500 GFYIRSGITVILKNSVIKDGVVI 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 630 bits (1624), Expect = e-179, Method: Compositional matrix adjust.
Identities = 306/486 (62%), Positives = 377/486 (77%), Gaps = 8/486 (1%)
Query: 45 KQLKKSLKAEKRDEKVKPGVAYAVMTSKHPNEVMTLAPPRLER-RRVDPKNVAAIILGGG 103
K+LK + K + R VKP + ++ T + LER ++ D + V AIILGGG
Sbjct: 3 KKLKYT-KFQLRSNVVKPNICMSLTTDIAGEAKLK----DLERQKKGDARTVVAIILGGG 57
Query: 104 AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY 163
AGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+++LTQFNSASLNRHIAR Y
Sbjct: 58 AGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAY 117
Query: 164 -FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCG 222
FGNG F G+VEVLAATQTPGE GK WFQGTA AVRQF W+FEDA++++IE+V IL G
Sbjct: 118 NFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLFEDARSKDIEDVLILSG 177
Query: 223 DHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANL 282
DHLYRMDY+ F+QSH ADITIS + +SRASD+GL+KID+ GR+ F+EKP G +L
Sbjct: 178 DHLYRMDYLHFVQSHRQSGADITISSLPIDDSRASDFGLMKIDDTGRVMSFSEKPKGDDL 237
Query: 283 KAMQVDTSLLGFSPQEARKCPYVASMG-VYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI 341
KAM VDT++LG SP+EA++ PY+AS+G VYVFKKD+L LLRWR+PT+NDFGSEIIPA+
Sbjct: 238 KAMAVDTTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWRFPTANDFGSEIIPAST 297
Query: 342 MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN 401
E V+AY+F DYWEDIGTI+SF+ AN+ALT+ P F FYD P YTS R LPP+ IDN
Sbjct: 298 KEFCVKAYLFNDYWEDIGTIRSFFRANLALTEHPPRFSFYDATKPIYTSRRNLPPSAIDN 357
Query: 402 CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461
+I D+I+SHG FL C VEHS+VG RSR+ V LKDTVMLGADYY+T++EI S LAEG
Sbjct: 358 SKIVDSIVSHGIFLTNCFVEHSVVGIRSRIGTNVHLKDTVMLGADYYETDAEIRSQLAEG 417
Query: 462 KVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI 521
KVP+G+G NT+I++CIIDKN +IGK+VVI N + VQEADR GFY+ SGIT+I + +TI
Sbjct: 418 KVPLGIGENTRIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYMASGITVISKNSTI 477
Query: 522 EDGMVI 527
DG VI
Sbjct: 478 PDGTVI 483
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 527 | ||||||
| 194595409 | 527 | ADP-glucose pyrophosphorylase large subu | 1.0 | 1.0 | 0.992 | 0.0 | |
| 5917791 | 531 | ADP-glucose pyrophosphorylase large subu | 0.992 | 0.984 | 0.958 | 0.0 | |
| 255543725 | 531 | glucose-1-phosphate adenylyltransferase, | 1.0 | 0.992 | 0.804 | 0.0 | |
| 224103389 | 527 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.793 | 0.0 | |
| 224080375 | 526 | predicted protein [Populus trichocarpa] | 0.998 | 1.0 | 0.802 | 0.0 | |
| 225428422 | 527 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 1.0 | 0.774 | 0.0 | |
| 297744412 | 517 | unnamed protein product [Vitis vinifera] | 0.981 | 1.0 | 0.760 | 0.0 | |
| 356545193 | 528 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.998 | 0.770 | 0.0 | |
| 83630945 | 524 | ADPglucose pyrophosphorylase large subun | 0.994 | 1.0 | 0.751 | 0.0 | |
| 356508352 | 519 | PREDICTED: glucose-1-phosphate adenylylt | 0.982 | 0.998 | 0.763 | 0.0 |
| >gi|194595409|gb|ACF77017.1| ADP-glucose pyrophosphorylase large subunit [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/527 (99%), Positives = 525/527 (99%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV
Sbjct: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV
Sbjct: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA
Sbjct: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR
Sbjct: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR
Sbjct: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
KCPYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT
Sbjct: 301 KCPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAIISHGCFLRECTV
Sbjct: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAIISHGCFLRECTV 420
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
EHSIVGERSR+DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK
Sbjct: 421 EHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
Query: 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
NVKIGKDVVIVNKD VQEADRPELGFYIRSGITIIMEKATIEDGMVI
Sbjct: 481 NVKIGKDVVIVNKDGVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5917791|gb|AAD56042.1|AF184598_1 ADP-glucose pyrophosphorylase large subunit [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/535 (95%), Positives = 518/535 (96%), Gaps = 12/535 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSV NDGCTKQLKKSLKAEKRDEKV
Sbjct: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVRNDGCTKQLKKSLKAEKRDEKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAYA+MTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV
Sbjct: 61 KPGVAYAIMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV+GCYRLIDIP INSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA
Sbjct: 121 PVSGCYRLIDIP----INSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 176
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--------YRMDYMD 232
TQTPGESGKNWFQGTADAV +FTWVFEDAKNRNIENVAILCGDHL YRMDYMD
Sbjct: 177 TQTPGESGKNWFQGTADAVTRFTWVFEDAKNRNIENVAILCGDHLSILCGDHLYRMDYMD 236
Query: 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL 292
FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL
Sbjct: 237 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL 296
Query: 293 GFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR 352
GFSPQEARK PYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR
Sbjct: 297 GFSPQEARKSPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR 356
Query: 353 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHG 412
DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAIISHG
Sbjct: 357 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAIISHG 416
Query: 413 CFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 472
CFLRECTVEHSIVGERSR+DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK
Sbjct: 417 CFLRECTVEHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 476
Query: 473 IRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
IRNCIIDKNVKIGKDVVIVNKD VQEADRPELGFYIRSGITIIMEKATIEDGMVI
Sbjct: 477 IRNCIIDKNVKIGKDVVIVNKDGVQEADRPELGFYIRSGITIIMEKATIEDGMVI 531
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543725|ref|XP_002512925.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223547936|gb|EEF49428.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/531 (80%), Positives = 468/531 (88%), Gaps = 4/531 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSC + L NT++VKASK G GD GE IRGS N Q+K+ LKA+ KV
Sbjct: 1 MDSCLMALNTNTNLVKASKGGINTGDKEFLGEMIRGSSKNSVWFNQMKRRLKADWNVNKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPP----RLERRRVDPKNVAAIILGGGAGTKLFPLTLRAA 116
KPGVAYAV+TS +P E++TL+PP R ERR+VDPKNVA+IILGGGAGT+LFPLT RAA
Sbjct: 61 KPGVAYAVLTSNNPKEIVTLSPPPPPPRFERRKVDPKNVASIILGGGAGTQLFPLTRRAA 120
Query: 117 TPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176
TPAVPV GCY+LIDIPMSNCINSGINKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVE
Sbjct: 121 TPAVPVGGCYKLIDIPMSNCINSGINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVE 180
Query: 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 236
VLAATQTPGE+G NWFQGTADAVRQFTWVFEDAKNRN+EN+ IL GDHLYRMDYMDF+Q
Sbjct: 181 VLAATQTPGEAGMNWFQGTADAVRQFTWVFEDAKNRNVENILILSGDHLYRMDYMDFVQH 240
Query: 237 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 296
HVD +ADITISCAAVGESRASDYGLVKID+ GRI FAEKP GA LK+++ DT+ LG SP
Sbjct: 241 HVDSNADITISCAAVGESRASDYGLVKIDSRGRIVHFAEKPGGAELKSLKADTTQLGLSP 300
Query: 297 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 356
Q+A K PY+ASMGVYVF+ ++L KLLRWR+PTSNDFGSEIIPAA+MEH++Q+Y FRDYWE
Sbjct: 301 QDALKSPYIASMGVYVFRTEILLKLLRWRFPTSNDFGSEIIPAAVMEHNIQSYNFRDYWE 360
Query: 357 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 416
DIGTIKSFYEAN+ALT+E P F FYDPKTPFYTSPRFLPPTKID CRI DAIISHGCFLR
Sbjct: 361 DIGTIKSFYEANLALTEEPPTFEFYDPKTPFYTSPRFLPPTKIDKCRIVDAIISHGCFLR 420
Query: 417 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 476
ECTV HS+VGERSRLDYGVELKDTVMLGADYYQTE+EIASLLAEGKVPIGVGRNTKI+NC
Sbjct: 421 ECTVRHSVVGERSRLDYGVELKDTVMLGADYYQTETEIASLLAEGKVPIGVGRNTKIKNC 480
Query: 477 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
IIDKN KIGKDVVIVNKD VQEADRPE GFYIRSGITIIMEKATIEDG VI
Sbjct: 481 IIDKNAKIGKDVVIVNKDGVQEADRPEEGFYIRSGITIIMEKATIEDGTVI 531
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103389|ref|XP_002313036.1| predicted protein [Populus trichocarpa] gi|222849444|gb|EEE86991.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/527 (79%), Positives = 458/527 (86%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCC L+ANTHV KASK G GD WGERIRGS +N QL KSLK +K K
Sbjct: 1 MDSCCATLKANTHVAKASKGGFNNGDKEFWGERIRGSFNNSVWVNQLAKSLKVDKSVNKF 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA++V+TS + E +TL PPR ERR+ DPKNVA+IILGGGAGT+LFPLT RAATPAV
Sbjct: 61 KPGVAFSVLTSSNGRETVTLQPPRFERRKADPKNVASIILGGGAGTQLFPLTRRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
P+ GCYRLIDIPMSNCINSGINKIFVLTQFNS SLNRH+ARTYFGNG FGDGFVEVLAA
Sbjct: 121 PLGGCYRLIDIPMSNCINSGINKIFVLTQFNSTSLNRHLARTYFGNGIIFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WFQGTADAVRQFTWVFEDAKNRNIEN+ +L GDHLYRMDYMDF+Q H+D
Sbjct: 181 TQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRNIENILVLSGDHLYRMDYMDFVQHHIDS 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+AD TISCAAVGESRASDYGLVKID G++ QFAEKP G+ L+ M+VDT+ LG SPQ+A
Sbjct: 241 NADFTISCAAVGESRASDYGLVKIDGRGQVFQFAEKPKGSELREMRVDTTRLGLSPQDAM 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L KLLRWRYPT+NDFGSEIIPAA+MEH+VQAYIF+DYWEDIGT
Sbjct: 301 KSPYIASMGVYVFKTDILLKLLRWRYPTANDFGSEIIPAAVMEHNVQAYIFKDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEAN+AL +E P F FYDPKTPFYTSPRF PPTK D CRI +AIISHGCFLRECTV
Sbjct: 361 IKSFYEANLALAEEPPKFEFYDPKTPFYTSPRFSPPTKFDKCRIVNAIISHGCFLRECTV 420
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HS+VGERSRLDYGVELKDTVMLGAD YQTE EIASLLAEG+VPIGVGRNTKIRNCIIDK
Sbjct: 421 QHSVVGERSRLDYGVELKDTVMLGADCYQTEVEIASLLAEGEVPIGVGRNTKIRNCIIDK 480
Query: 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
N KIGKDV+I+NKD VQEADR E GFYIRSGITII EKATIEDG VI
Sbjct: 481 NAKIGKDVIIMNKDGVQEADREEEGFYIRSGITIISEKATIEDGTVI 527
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080375|ref|XP_002306116.1| predicted protein [Populus trichocarpa] gi|222849080|gb|EEE86627.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/527 (80%), Positives = 457/527 (86%), Gaps = 1/527 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSC V LRANT V KASK G GD WGERIRGS +N Q KSLK +K K
Sbjct: 1 MDSCYVALRANTPVAKASKGGFINGDTEFWGERIRGSFNNI-WVNQFAKSLKVDKSVNKF 59
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
PGVA+AV+TS + E +TL PPR RRR DPKNVA+IILGGGAGT+LFPLT RAATPAV
Sbjct: 60 TPGVAFAVLTSNNGKETVTLQPPRFGRRRADPKNVASIILGGGAGTQLFPLTRRAATPAV 119
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRH+A TYFGNG NFGDGFVEVLAA
Sbjct: 120 PVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHLAHTYFGNGINFGDGFVEVLAA 179
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WFQGTADAVRQFTWVFEDAKNR+IEN+ IL GDHLYRMDYMDF+Q HVD
Sbjct: 180 TQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRSIENILILSGDHLYRMDYMDFVQHHVDS 239
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADITISC AVGESRASDYGLVKID+ G+I QF EKP G+ L+ MQVDT+ LG SPQ+A
Sbjct: 240 NADITISCVAVGESRASDYGLVKIDSKGQIFQFTEKPKGSELREMQVDTTHLGLSPQDAL 299
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K Y+ASMGVYVFK D+L KLLRWR+PTSNDFGSEIIPAA+MEH+VQAYIF+DYWEDIGT
Sbjct: 300 KSSYIASMGVYVFKTDILLKLLRWRFPTSNDFGSEIIPAAVMEHNVQAYIFKDYWEDIGT 359
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEAN+AL +E P F FYDPKTPFYTSP FLPPTKID CRI DAIISHGCFLRECTV
Sbjct: 360 IKSFYEANLALAEEPPKFEFYDPKTPFYTSPGFLPPTKIDKCRIVDAIISHGCFLRECTV 419
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HS+VGERSRLDYGVELKDTVMLGAD+YQTE+EIASLLAEGKVPIGVGRNTKIRNCIIDK
Sbjct: 420 QHSVVGERSRLDYGVELKDTVMLGADHYQTEAEIASLLAEGKVPIGVGRNTKIRNCIIDK 479
Query: 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
N KIGKDV+I NKD VQEADR E GFYIRSGITII+EKATIEDG VI
Sbjct: 480 NAKIGKDVIITNKDGVQEADREEKGFYIRSGITIILEKATIEDGTVI 526
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428422|ref|XP_002283855.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/527 (77%), Positives = 460/527 (87%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCV +A H+ KAS+ G GDN WGERIRGS++N G QL K LK EKR K+
Sbjct: 1 MDSCCVTFKAKAHLAKASRGGLSNGDNEFWGERIRGSLNNSGWVSQLAKGLKTEKRPRKI 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA +V+TS + E +T+ P ERRR DPKNVA+IILGGGAGT+LFPLT+R ATPAV
Sbjct: 61 KPGVACSVITSNNGKETVTIQAPIFERRRADPKNVASIILGGGAGTQLFPLTIRQATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIF+LTQFNSASLNRHIARTYFGNG NFGDGFVEVLAA
Sbjct: 121 PVGGCYRLIDIPMSNCINSNINKIFILTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WF+GTADAVR+F WVFEDAKN+NIEN+ IL GDHLYRMDYMD +Q+H+DR
Sbjct: 181 TQTPGEAGMKWFEGTADAVRKFIWVFEDAKNKNIENILILSGDHLYRMDYMDLVQNHIDR 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
ADIT+SC VGESRASDYGL+K+DN GRI QFAEKP GA+LKAM+VDT+ LG SPQEA
Sbjct: 241 KADITVSCVPVGESRASDYGLLKMDNRGRIIQFAEKPKGADLKAMKVDTTRLGLSPQEAM 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L LLRWRYPTSNDFGSEIIP A+MEH+V+A++FRDYWEDIGT
Sbjct: 301 KSPYIASMGVYVFKTDILLNLLRWRYPTSNDFGSEIIPLAVMEHNVEAFLFRDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IK+FYEANM LT+E P F FY+PKTP +TSPRFLPPTKI+ C++ DAIISHGCFLREC+V
Sbjct: 361 IKTFYEANMGLTEEFPKFEFYNPKTPIFTSPRFLPPTKIEQCQVVDAIISHGCFLRECSV 420
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HSIVGERSRLDYGVELKDT+M+GAD+YQTESEIASLLAEG VPIG+GRNTKIRNCIIDK
Sbjct: 421 KHSIVGERSRLDYGVELKDTLMMGADFYQTESEIASLLAEGNVPIGIGRNTKIRNCIIDK 480
Query: 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
N KIGKD VIVNKD VQEADRP+ GFYIRSGITII+EKATI+DG VI
Sbjct: 481 NAKIGKDAVIVNKDGVQEADRPDDGFYIRSGITIILEKATIKDGTVI 527
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744412|emb|CBI37674.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/527 (76%), Positives = 454/527 (86%), Gaps = 10/527 (1%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCV +A H+ KAS+ G GDN WGERIRGS++N G Q +K +
Sbjct: 1 MDSCCVTFKAKAHLAKASRGGLSNGDNEFWGERIRGSLNNSGWVSQPRK----------I 50
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA +V+TS + E +T+ P ERRR DPKNVA+IILGGGAGT+LFPLT+R ATPAV
Sbjct: 51 KPGVACSVITSNNGKETVTIQAPIFERRRADPKNVASIILGGGAGTQLFPLTIRQATPAV 110
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIF+LTQFNSASLNRHIARTYFGNG NFGDGFVEVLAA
Sbjct: 111 PVGGCYRLIDIPMSNCINSNINKIFILTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAA 170
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WF+GTADAVR+F WVFEDAKN+NIEN+ IL GDHLYRMDYMD +Q+H+DR
Sbjct: 171 TQTPGEAGMKWFEGTADAVRKFIWVFEDAKNKNIENILILSGDHLYRMDYMDLVQNHIDR 230
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
ADIT+SC VGESRASDYGL+K+DN GRI QFAEKP GA+LKAM+VDT+ LG SPQEA
Sbjct: 231 KADITVSCVPVGESRASDYGLLKMDNRGRIIQFAEKPKGADLKAMKVDTTRLGLSPQEAM 290
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L LLRWRYPTSNDFGSEIIP A+MEH+V+A++FRDYWEDIGT
Sbjct: 291 KSPYIASMGVYVFKTDILLNLLRWRYPTSNDFGSEIIPLAVMEHNVEAFLFRDYWEDIGT 350
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IK+FYEANM LT+E P F FY+PKTP +TSPRFLPPTKI+ C++ DAIISHGCFLREC+V
Sbjct: 351 IKTFYEANMGLTEEFPKFEFYNPKTPIFTSPRFLPPTKIEQCQVVDAIISHGCFLRECSV 410
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HSIVGERSRLDYGVELKDT+M+GAD+YQTESEIASLLAEG VPIG+GRNTKIRNCIIDK
Sbjct: 411 KHSIVGERSRLDYGVELKDTLMMGADFYQTESEIASLLAEGNVPIGIGRNTKIRNCIIDK 470
Query: 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
N KIGKD VIVNKD VQEADRP+ GFYIRSGITII+EKATI+DG VI
Sbjct: 471 NAKIGKDAVIVNKDGVQEADRPDDGFYIRSGITIILEKATIKDGTVI 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545193|ref|XP_003541029.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/528 (77%), Positives = 455/528 (86%), Gaps = 1/528 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVS-NDGCTKQLKKSLKAEKRDEK 59
M S CV L+ANTH+VK+ K + D+ GERI+G ++ + QL SL+ ++R +K
Sbjct: 1 MVSACVTLKANTHLVKSRKDNTFRQDSGFLGERIKGGLNYSPWIINQLASSLRTQERVKK 60
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
KPGV AV+TS + E + P RR+ DPKNV +IILGGG G +LFPLT RAATPA
Sbjct: 61 AKPGVVSAVLTSSNTKESVAFQMPSFLRRKADPKNVVSIILGGGPGIQLFPLTKRAATPA 120
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYRLIDIPMSNCINSG+NKIFVLTQFNSASLNRHI+RTYFGNG NFGDG VEVLA
Sbjct: 121 VPVGGCYRLIDIPMSNCINSGLNKIFVLTQFNSASLNRHISRTYFGNGINFGDGCVEVLA 180
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQT GE+GKNWFQGTADAVRQFTWVFEDAK+ NIENV IL GDHLYRMDYMD +QSHVD
Sbjct: 181 ATQTQGETGKNWFQGTADAVRQFTWVFEDAKHTNIENVLILAGDHLYRMDYMDLVQSHVD 240
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
R+ADIT+SCAAVGESRASDYGLVK D GRI QF+EKP GA+LKAMQVDTS+LG P EA
Sbjct: 241 RNADITVSCAAVGESRASDYGLVKADGRGRIIQFSEKPKGADLKAMQVDTSVLGLPPHEA 300
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
++ PY+ASMGVYVFK DVL KLL+WRYPTSNDFGSEIIPAA+ E++VQAY F DYWEDIG
Sbjct: 301 KRSPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPAAVRENNVQAYFFNDYWEDIG 360
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFY+AN+ALT+E+P F FYDPKTP YTSPRFLPPTKID CRI DAIISHGCFLRECT
Sbjct: 361 TIKSFYDANLALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECT 420
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
V+HSIVGERSRLDYGVEL+DTVM+GADYYQTESEIASLLAEGKVPIG+GRNTKIRNCIID
Sbjct: 421 VQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIID 480
Query: 480 KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
KN KIGKDV+I+NKD VQEADRPE GFYIRSGIT+I+EKATIEDG VI
Sbjct: 481 KNAKIGKDVIIMNKDGVQEADRPEDGFYIRSGITVILEKATIEDGTVI 528
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83630945|gb|ABC26921.1| ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] gi|83630947|gb|ABC26922.1| ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/527 (75%), Positives = 457/527 (86%), Gaps = 3/527 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MD+CC +++ H+ + S G G+ ++GE+IRGS++N+ QL KSLK EK K+
Sbjct: 1 MDTCCAAMKSTVHLGRVSTGGFNNGEKEIFGEKIRGSLNNNLRINQLSKSLKLEK---KI 57
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAY+V+T+++ E + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATPAV
Sbjct: 58 KPGVAYSVITTENDTETVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAV 117
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIFVLTQ+NSA+LNRHIARTYFGNG +FGDGFVEVLAA
Sbjct: 118 PVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAALNRHIARTYFGNGVSFGDGFVEVLAA 177
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+DR
Sbjct: 178 TQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENILVLSGDHLYRMDYMELVQNHIDR 237
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G LKAMQVDT+L+G SPQ+A+
Sbjct: 238 NADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFELKAMQVDTTLVGLSPQDAK 297
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDIGT
Sbjct: 298 KSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGT 357
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+CTV
Sbjct: 358 IKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCTV 417
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
EHSIVGERSRLD GVELKDT M+GADYYQTESEIASLLAEGKVPIG+G NTKIR CIIDK
Sbjct: 418 EHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDK 477
Query: 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
N KIGK+V I+NKD VQEADRPE GFYIRSGI II EKATI DG VI
Sbjct: 478 NAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIISEKATIRDGTVI 524
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508352|ref|XP_003522921.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/528 (76%), Positives = 444/528 (84%), Gaps = 10/528 (1%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCT-KQLKKSLKAEKRDEK 59
M S CV L++NTH+ + K GERI+G +N QL ++ KR K
Sbjct: 1 MASACVTLKSNTHLANSEK--------GFLGERIKGGFNNSALVMNQLAIRSRSHKR-VK 51
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
GV AV+TS + E +TL P RRR DPKNV +IILGGG GT+LFPLT RAATPA
Sbjct: 52 HGVGVVSAVLTSNNAKESLTLQVPSFLRRRADPKNVISIILGGGPGTQLFPLTKRAATPA 111
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYRLIDIPMSNC+NSGINKIFVLTQFNSASLNRHIARTYFGNG NFGDG VEVLA
Sbjct: 112 VPVGGCYRLIDIPMSNCLNSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGIVEVLA 171
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GKNWFQGTADAVRQFTWVFEDAKN N+ENV IL GDHLYRMDYMD +QSHVD
Sbjct: 172 ATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQSHVD 231
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
R+ADIT+SCAAVG+SRASDYGLVK+D+ GRI QF+EKP+G +LKAMQ DTSLLG SPQ+A
Sbjct: 232 RNADITVSCAAVGDSRASDYGLVKVDDRGRIIQFSEKPNGDDLKAMQADTSLLGLSPQDA 291
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVYVFK DVL LL+WRYPTSNDFGSEIIPAA+ +HDVQ+Y F DYWEDIG
Sbjct: 292 LKSPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVRDHDVQSYFFEDYWEDIG 351
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFY+AN+ALT+ES F FYDPK P YTSP FLPPTKID C+I DAIISHGCFLRECT
Sbjct: 352 TIKSFYDANLALTEESHKFEFYDPKIPIYTSPGFLPPTKIDKCQIVDAIISHGCFLRECT 411
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
V+HSIVGERSRLDYGVEL DTVM+GADYYQTESEIASLLAEGKVPIG+GRNTKIRNCIID
Sbjct: 412 VQHSIVGERSRLDYGVELLDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIID 471
Query: 480 KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
KN KIGKDV+I NKD VQEADRPE GFYIRSGITIIMEKATIEDG ++
Sbjct: 472 KNAKIGKDVIIANKDGVQEADRPEDGFYIRSGITIIMEKATIEDGTIV 519
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 527 | ||||||
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.986 | 0.998 | 0.719 | 1.3e-205 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.944 | 0.952 | 0.735 | 1.6e-203 | |
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.977 | 0.994 | 0.643 | 9.4e-185 | |
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.840 | 0.848 | 0.674 | 1.1e-167 | |
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.821 | 0.832 | 0.533 | 1.8e-126 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.814 | 0.834 | 0.530 | 1.9e-124 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.789 | 0.873 | 0.410 | 1.5e-81 | |
| TIGR_CMR|SO_1498 | 420 | SO_1498 "glucose-1-phosphate a | 0.711 | 0.892 | 0.363 | 1.9e-53 | |
| TIGR_CMR|BA_5122 | 376 | BA_5122 "glucose-1-phosphate a | 0.347 | 0.486 | 0.369 | 2e-46 | |
| UNIPROTKB|Q9KLP4 | 407 | glgC2 "Glucose-1-phosphate ade | 0.629 | 0.815 | 0.320 | 4e-42 |
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1989 (705.2 bits), Expect = 1.3e-205, P = 1.3e-205
Identities = 380/528 (71%), Positives = 434/528 (82%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEK 59
MDSCC T V A K K +N GE+I+GSV K L ++K R+ K
Sbjct: 1 MDSCC-NFSLGTKTVLA-KDSFKNVENKFLGEKIKGSV-----LKPFSSDLSSKKFRNRK 53
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
++PGVAYA+ TSK+ E + P ERRR DPKNVAAIILGGG G KLFPLT RAATPA
Sbjct: 54 LRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPA 113
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYR+IDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVEVLA
Sbjct: 114 VPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVEVLA 173
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q HVD
Sbjct: 174 ATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVD 233
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
ADIT+SCA V ESRAS+YGLV ID GR+ F+EKP+G +LK+MQ DT++ G S QEA
Sbjct: 234 SKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEA 293
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWEDIG
Sbjct: 294 AKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIG 353
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFYEAN+AL +E P F FYD TPFYTSPRFLPPTK + CRI +++ISHGCFL EC+
Sbjct: 354 TIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECS 413
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
++ SI+GERSRLDYGVEL+DT+MLGAD YQTESEIASLLAEG VPIG+GR+TKIR CIID
Sbjct: 414 IQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKCIID 473
Query: 480 KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
KN KIGK+VVI+NKDDV+EADRPE GFYIRSGIT+++EKATI+DG VI
Sbjct: 474 KNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521
|
|
| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1969 (698.2 bits), Expect = 1.6e-203, P = 1.6e-203
Identities = 370/503 (73%), Positives = 430/503 (85%)
Query: 26 DNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPR 84
+N +GE+ +N+G K+ L ++K R++K K GV YAV TS +P + MT+
Sbjct: 25 ENRFYGEKN----NNNGLCKRFGSDLGSKKFRNQKFKHGVVYAVATSDNPKKAMTVKTSM 80
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
ERR+VDP+NVAAIILGGG G KLFPLT+RAATPAVPV GCYRLIDIPMSNCINS INKI
Sbjct: 81 FERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKI 140
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
FVLTQFNSASLNRH+ARTYFGNG NFG GFVEVLAATQTPGE+GK WFQGTADAVR+F W
Sbjct: 141 FVLTQFNSASLNRHLARTYFGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLW 200
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
VFEDAKNRNIEN+ IL GDHLYRM+YMDF+QSHVD +ADIT+SCA V ESRAS++GLVKI
Sbjct: 201 VFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKI 260
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D GR+ F+EKP+G +LK+MQ DT++LG S QEA PY+ASMGVY FK + L LL
Sbjct: 261 DRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTR 320
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
+YP+SNDFGSE+IPAAI +HDVQ YIFRDYWEDIGTIK+FYEAN+AL +E P F FYDP+
Sbjct: 321 QYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPE 380
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
TPFYTSPRFLPPTK + CR+ D+IISHGCFLREC+V+ SI+GERSRLDYGVEL+DT+MLG
Sbjct: 381 TPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLG 440
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 504
ADYYQTESEIASLLAEGKVPIG+G++TKIR CIIDKN KIGK+V+I+NK DVQEADRPE
Sbjct: 441 ADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEE 500
Query: 505 GFYIRSGITIIMEKATIEDGMVI 527
GFYIRSGIT+I+EKATI+DG VI
Sbjct: 501 GFYIRSGITVIVEKATIQDGTVI 523
|
|
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1792 (635.9 bits), Expect = 9.4e-185, P = 9.4e-185
Identities = 341/530 (64%), Positives = 423/530 (79%)
Query: 1 MDSCCVGLRAN--THVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDE 58
M+SC ++ N T + ++ +A WG ++ N T +L+ + + +
Sbjct: 1 MESCFPAMKLNQCTFGLNNEIVSERV--SAFWGTQV--VKPNHLRTTKLRSAPQ-----K 51
Query: 59 KVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
K++ + +V+T P P L + DPKNVA+IILGGGAGT+LFPLT + A P
Sbjct: 52 KIQTNLIRSVLT---PFVDQESHEPLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKP 108
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEV 177
AVP+ GCYRLIDIPMSNCINSGI KIF+LTQFNS SLNRH++RTY FGNG NFGDGFVEV
Sbjct: 109 AVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEV 168
Query: 178 LAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSH 237
LAATQT G++GK WFQGTADAVRQF WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q H
Sbjct: 169 LAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKH 228
Query: 238 VDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQ 297
++ +ADIT+SC + ESRASD+GL+KID G+I QF+EKP G +LKAMQVDTS+LG P+
Sbjct: 229 IESNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPK 288
Query: 298 EARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWED 357
EA + PY+ASMGVYVF+K+VL KLLR YPTSNDFGSEIIP A+ EH+VQA++F DYWED
Sbjct: 289 EAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWED 348
Query: 358 IGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE 417
IGTI SF++AN+ALT++ P F FYD KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLRE
Sbjct: 349 IGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRE 408
Query: 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCI 477
C+V+HSIVG RSRL+ GVEL+DT+M+GAD+YQTE+EIASLLAEGKVP+GVG+NTKI+NCI
Sbjct: 409 CSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNCI 468
Query: 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
IDKN KIGK+VVI N D V+E DRPE GF+IRSGIT++++ ATI DG+ I
Sbjct: 469 IDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDGLHI 518
|
|
| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1631 (579.2 bits), Expect = 1.1e-167, P = 1.1e-167
Identities = 299/443 (67%), Positives = 365/443 (82%)
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
LE + DP+ VA+IILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+
Sbjct: 80 LETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKV 139
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
++LTQ+NSASLNRH+AR Y NG FGDG+VEVLAATQTPGESGK WFQGTADAVRQF W
Sbjct: 140 YILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHW 199
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
+FEDA++++IE+V IL GDHLYRMDYMDFIQ H ADI+ISC + + RASD+GL+KI
Sbjct: 200 LFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKI 259
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D+ GR+ F+EKP G +LKAM VDT++LG S +EA K PY+ASMGVYVFKK++L LLRW
Sbjct: 260 DDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRW 319
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
R+PT+NDFGSEIIP + E V AY+F DYWEDIGTI+SF+EAN+ALT+ AF FYD
Sbjct: 320 RFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAA 379
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
P YTS R LPP+KIDN ++ D+IISHG FL C +EHSIVG RSR+ V+LKDTVMLG
Sbjct: 380 KPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLG 439
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 504
ADYY+TE+E+A+LLAEG VPIG+G NTKI+ CIIDKN ++GK+V+I N + +QEADR
Sbjct: 440 ADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSD 499
Query: 505 GFYIRSGITIIMEKATIEDGMVI 527
GFYIRSGIT+I++ + I+DG+VI
Sbjct: 500 GFYIRSGITVILKNSVIKDGVVI 522
|
|
| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
Identities = 237/444 (53%), Positives = 323/444 (72%)
Query: 90 VDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFV 146
+DP +V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+V
Sbjct: 82 LDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 141
Query: 147 LTQFNSASLNRHIARTYFGN-GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205
LTQFNSASLNRH++R Y N G +GFVEVLAA Q+P NWFQGTADAVRQ+ W+
Sbjct: 142 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWL 199
Query: 206 FEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
FE+ N+ IL GDHLYRMDY FIQ+H + DADIT++ + E RA+ +GL+KID
Sbjct: 200 FEE---HNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKID 256
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
GRI +FAEKP G +LKAM+VDT++LG Q A++ P++ASMG+YV +DV+ LLR +
Sbjct: 257 EEGRIIEFAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQ 316
Query: 326 YPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDP 383
+P +NDFGSE+IP A + VQAY++ YWEDIGTI++FY AN+ +TK+ P F FYD
Sbjct: 317 FPGANDFGSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 376
Query: 384 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVML 443
P YT PR+LPP+K+ + + D++I GC ++ C + HS+VG RS + G ++D++++
Sbjct: 377 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLM 436
Query: 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPE 503
GADYY+T +E + L A+G VPIG+G+N+ I+ IIDKN +IG +V I+N D+VQEA R
Sbjct: 437 GADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARET 496
Query: 504 LGFYIRSGITIIMEKATIEDGMVI 527
G++I+SGI +++ A I G VI
Sbjct: 497 DGYFIKSGIVTVIKDALIPTGTVI 520
|
|
| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 232/437 (53%), Positives = 315/437 (72%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA 153
+V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+VLTQFNSA
Sbjct: 83 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 142
Query: 154 SLNRHIARTYFGN-GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SLNRH++R Y N G +GFVEVLAA Q+P NWFQGTADAVRQ+ W+FE+
Sbjct: 143 SLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP--DNPNWFQGTADAVRQYLWLFEE---H 197
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
N+ IL GDHLYRMDY FIQ+H + D+DIT++ + E RA+ +GL+KID GRI +
Sbjct: 198 NVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVE 257
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332
FAEKP G LKAM VDT++LG A++ PY+ASMG+YV K+V+ +LLR ++P +NDF
Sbjct: 258 FAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDF 317
Query: 333 GSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTS 390
GSE+IP A + VQAY++ YWEDIGTI++FY AN+ +TK+ P F FYD P YT
Sbjct: 318 GSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQ 377
Query: 391 PRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450
PR LPP+K+ + + D++I GC ++ C + HS+VG RS + G ++D++++GADYY+T
Sbjct: 378 PRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYET 437
Query: 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRS 510
E++ L +G +PIG+G+N IR IIDKN +IG +V I+N D+VQEA R G++I+S
Sbjct: 438 EADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKS 497
Query: 511 GITIIMEKATIEDGMVI 527
GI +++ A + G VI
Sbjct: 498 GIVTVIKDALLPSGTVI 514
|
|
| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 182/443 (41%), Positives = 269/443 (60%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++VAAI+ GGG+ ++L+PLT + A+P+A YRLID +SNCINSGI KI+ +TQFNS
Sbjct: 53 QSVAAIVFGGGSDSELYPLTKTRSKGAIPIAANYRLIDAVISNCINSGITKIYAITQFNS 112
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SLN H+++ Y G G D FVEV+AA Q+ + G WFQGTADA+R+ WVFE+
Sbjct: 113 TSLNSHLSKAYSGFGLG-KDRFVEVIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP-- 167
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD----YGLVKIDNMG 268
+ +L G HLY+MDY I+ H ADITI VG S +D +G +++D+
Sbjct: 168 -VTEFLVLPGHHLYKMDYKMLIEDHRRSRADITI----VGLSSVTDHDFGFGFMEVDSTN 222
Query: 269 RIAQFAEKPSGANLK-AMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327
+ +F K + A + T G S C V S G+YV ++ + KLLR
Sbjct: 223 AVTRFTIKGQQDLISVANRTATRSDGTS-----SCS-VPSAGIYVIGREQMVKLLRECLI 276
Query: 328 TSNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP 386
S D SEIIP AI E V+A++F YWED+ +I ++Y ANM K ++ FYD + P
Sbjct: 277 KSKDLASEIIPGAISEGMKVKAHMFDGYWEDVRSIGAYYRANMESIK---SYRFYDRQCP 333
Query: 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD 446
YT PR LPP+ + I ++II GC L +C + S+VG R+R+ V ++D++++G+D
Sbjct: 334 LYTMPRCLPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSD 393
Query: 447 YYQTESEIASLLAEGKVPI--GVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 504
Y+ E ++ E K+ I G+G ++IR I+DKN +IGK+V+I+N+D+V+E +R
Sbjct: 394 IYEMEEDVRRKGKEKKIEIRIGIGEKSRIRRAIVDKNARIGKNVMIINRDNVEEGNREAQ 453
Query: 505 GFYIRSGITIIMEKATIEDGMVI 527
G+ IR GI II+ A I + ++
Sbjct: 454 GYVIREGIIIILRNAVIPNDSIL 476
|
|
| TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 159/437 (36%), Positives = 229/437 (52%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG G++L LT A PA+ G +R+ID P+SNCINSGI ++ V+TQ+ S SL
Sbjct: 16 ALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLI 75
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
RH+ R + G+ VE+L A+Q E NW+QGTADAV Q + ++ +
Sbjct: 76 RHVMRGWGHFKKELGES-VEILPASQRYSE---NWYQGTADAVFQNIDII---RHELPKY 128
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD-YGLVKIDNMGRIAQFAE 275
V +L GDH+YRMDY + +H + AD+T+SC V + A+ +G++++D+ RI F E
Sbjct: 129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRILGFEE 188
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WRYPTSNDF 332
KP L P KC +ASMG YVF + LF+ L+ + DF
Sbjct: 189 KPQ------------LPKHCPGNPEKC--LASMGNYVFNTEFLFEQLKKDAQNAESDRDF 234
Query: 333 GSEIIPAAIMEHDVQAYIFRD-------YWEDIGTIKSFYEANMALTKESPAFHFYDPKT 385
G +IIP+ I +H V AY F+ YW D+GT+ SF+ ANM L +PA + YD K
Sbjct: 235 GKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWLANMELLSPTPALNLYDAKW 294
Query: 386 PFYTSPRFLPPTKI---DNCR---IKDAIISHGCFLRECTVEHSIVGERSRL-DYGVELK 438
P +T LPP K D+ R D+IIS GC + TV S++ R+ Y V ++
Sbjct: 295 PIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSV-VE 353
Query: 439 DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE 498
D+V+L ++ L R+ KI+N IID+ I + VI D
Sbjct: 354 DSVVL--------PDVVVL-----------RHCKIKNAIIDRGCIIPEGTVIGYNHD--- 391
Query: 499 ADRPELGFYIRSGITII 515
DR + GIT++
Sbjct: 392 HDRAKGFRVSEKGITLV 408
|
|
| TIGR_CMR|BA_5122 BA_5122 "glucose-1-phosphate adenylyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 72/195 (36%), Positives = 104/195 (53%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L GG G++L LT A PAVP G YR+ID +SNC NSGI + +LTQ+ L+
Sbjct: 9 AMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELH 68
Query: 157 RHIARTYFGNGTNFG--DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNI 214
+I GN + G V VL SG W+ GTA A+ Q +
Sbjct: 69 NYIG---IGNAWDLDRVSGGVTVLPPYAE--SSGVKWYTGTASAIYQNLNYLSQYEP--- 120
Query: 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
E V IL GDH+Y+MDY + H++++AD++IS V AS +G++ + I +F
Sbjct: 121 EYVLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVEFE 180
Query: 275 EKPS--GANLKAMQV 287
EKP +NL +M +
Sbjct: 181 EKPQFPRSNLASMGI 195
|
|
| UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 117/365 (32%), Positives = 190/365 (52%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++ A+IL GG G++L PLT A PAVP G YR+ID ++NC++SG+ +I VLTQ+ S
Sbjct: 2 QDTLAVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKS 61
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SL++H+ + G+ F+ V+ G GK W++GTADA+ W+ A++
Sbjct: 62 HSLHKHLRNGWSIFNPELGE-FITVVPPQMRKG--GK-WYEGTADALFHNMWLL--ARS- 114
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+ + V +L GDH+YRMDY ++ H+ ++A +TI+C V AS +G++ ID+ RI
Sbjct: 115 DAKYVVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITC 174
Query: 273 FAEKPSGANLKAMQVDTSL--LG---FSPQEARKC---PYVASMGVYVFKKDVLFKLLRW 324
F EKP+ + D SL +G F+ +K + F KDV+ KL+
Sbjct: 175 FVEKPADPPCIPNRPDHSLASMGIYIFNMDVLKKALTEDAEIEQSSHDFGKDVIPKLIA- 233
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTKESPAFHFYDP 383
T + F + + RD YW D+GTI SFY+ANM L + P + Y
Sbjct: 234 ---TGSVFAYSFCSG-------KGRVARDCYWRDVGTIDSFYDANMDLLQPVPPMNLYQK 283
Query: 384 KTPFYTSPRFLPPTK-IDNCRIKD-----AIISHGCFLRECTVEHSIVGERSRLDYGVEL 437
T + PP + + + + +II++G +V+HSI+ R++ +
Sbjct: 284 NWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSNVRINDSALI 343
Query: 438 KDTVM 442
D+++
Sbjct: 344 VDSIL 348
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5917 | 0.8102 | 0.9953 | yes | no |
| P12300 | GLGL3_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6712 | 0.8216 | 0.866 | N/A | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.5331 | 0.8121 | 0.9930 | yes | no |
| Q00081 | GLGL1_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.7910 | 0.8899 | 0.9978 | N/A | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5481 | 0.8102 | 0.9953 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.5650 | 0.7855 | 0.9650 | yes | no |
| P55242 | GLGL2_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6446 | 0.9810 | 0.9961 | N/A | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6296 | 0.9070 | 0.9896 | N/A | no |
| P55241 | GLGL1_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.572 | 0.9297 | 0.9496 | N/A | no |
| P52415 | GLGC_SYNY3 | 2, ., 7, ., 7, ., 2, 7 | 0.5619 | 0.8102 | 0.9726 | N/A | no |
| B1WT08 | GLGC_CYAA5 | 2, ., 7, ., 7, ., 2, 7 | 0.5481 | 0.8102 | 0.9953 | yes | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.5733 | 0.8102 | 0.9953 | yes | no |
| P12299 | GLGL2_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6688 | 0.8747 | 0.8831 | N/A | no |
| P55233 | GLGL1_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.6510 | 0.9791 | 0.9885 | N/A | no |
| P55231 | GLGL3_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.7196 | 0.9867 | 0.9980 | yes | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.5642 | 0.8121 | 0.9953 | yes | no |
| P55234 | GLGL2_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.5984 | 0.9563 | 0.9673 | N/A | no |
| P30524 | GLGL1_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.6666 | 0.8747 | 0.8814 | N/A | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5642 | 0.8102 | 0.9953 | yes | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.5733 | 0.8102 | 0.9953 | yes | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.5688 | 0.8102 | 0.9953 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.5642 | 0.8121 | 0.9953 | yes | no |
| Q9SIK1 | GLGL4_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.7355 | 0.9449 | 0.9521 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.983 |
| 4th Layer | 2.7.7.27 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 527 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-175 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-133 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-105 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 1e-104 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 6e-96 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 2e-89 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 4e-57 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-37 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 4e-33 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 1e-31 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 3e-28 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 9e-16 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 9e-15 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 1e-14 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 3e-14 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 4e-14 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 1e-10 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 4e-07 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 2e-06 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 1e-05 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 3e-05 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 3e-05 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 4e-05 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 1e-04 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 1e-04 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 2e-04 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 2e-04 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 5e-04 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 0.003 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 869 bits (2248), Expect = 0.0
Identities = 330/438 (75%), Positives = 380/438 (86%), Gaps = 4/438 (0%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN 151
PK+VAAIILGGGAGT+LFPLT R A PAVP+ G YRLIDIPMSNCINSGINKI+VLTQFN
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 152 SASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAK 210
SASLNRH++R Y FGNG NFGDGFVEVLAATQTPGE G WFQGTADAVRQF W+FEDAK
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAK 118
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
N+N+E V IL GDHLYRMDYMDF+Q H + ADITI+C V ESRASD+GL+KID+ GRI
Sbjct: 119 NKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330
+F+EKP G LKAMQVDT++LG SP+EA++ PY+ASMG+YVFKKDVL KLLRWR+PT+N
Sbjct: 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238
Query: 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYT 389
DFGSEIIP AI E ++VQAY+F YWEDIGTIKSFYEAN+ALTK+ P F FYDP P YT
Sbjct: 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYT 298
Query: 390 SPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQ 449
SPRFLPP+KI++CRI D+IISHGCFLREC +EHS+VG RSR+ GVE++DTVM+GADYY+
Sbjct: 299 SPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYE 358
Query: 450 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR 509
TE EIASLLAEGKVPIG+G NTKIRN IIDKN +IGK+VVI+NKD VQEADR E G+YIR
Sbjct: 359 TEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIR 418
Query: 510 SGITIIMEKATIEDGMVI 527
SGI +I++ A I DG VI
Sbjct: 419 SGIVVILKNAVIPDGTVI 436
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 682 bits (1763), Expect = 0.0
Identities = 248/436 (56%), Positives = 322/436 (73%), Gaps = 9/436 (2%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K V AIILGGGAGT+L+PLT A PAVP+AG YRLIDIP+SNCINSGINKI+VLTQFNS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
ASLNRHI++TY N F GFVEVLAA QTP +WFQGTADAVR++ W F+
Sbjct: 62 ASLNRHISQTY--NFDGFSGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQ---EW 114
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+++ IL GD LYRMDY F+Q H + ADIT++ V E AS +GL+K D+ GRI +
Sbjct: 115 DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITE 174
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332
F+EKP G LKAM VDTS LG SP+EA+ PY+ASMG+YVF +DVLF LL + P DF
Sbjct: 175 FSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTDF 233
Query: 333 GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE-SPAFHFYDPKTPFYTSP 391
G EIIP AI ++ VQ+Y+F YWEDIGTI++FYEAN+ALT++ +P F FYD K P YT
Sbjct: 234 GKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRA 293
Query: 392 RFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451
R+LPP+K+ + I ++II+ GC ++ C++ HS++G RSR++ G ++DT+++GAD+Y++
Sbjct: 294 RYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESS 353
Query: 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511
E L EGK P+G+G T I+ IIDKN +IG +V IVNKD+V+EADR + GFYIR G
Sbjct: 354 EEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDG 413
Query: 512 ITIIMEKATIEDGMVI 527
I ++++ A I DG VI
Sbjct: 414 IVVVVKNAVIPDGTVI 429
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 497 bits (1283), Expect = e-175
Identities = 181/401 (45%), Positives = 239/401 (59%), Gaps = 45/401 (11%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L GG G++L PLT R A PAVP G YR+ID P+SNCINSGI +I VLTQ+ S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
RHI R + +G F DGFV +L A Q ESG +W+QGTADAV Q + ED + E
Sbjct: 61 RHIQRGWDFDG--FIDGFVTLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEY 113
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
V IL GDH+Y+MDY + H++ AD+TI+C V AS +G++++D GRI F EK
Sbjct: 114 VLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEK 173
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR---YPTSNDFG 333
P AN ++ +ASMG+Y+F KDVL +LL +S+DFG
Sbjct: 174 P--ANPPSIP------------GMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219
Query: 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRF 393
+IIP A+ E VQAY+F YW D+GTI SF+EANM L P F YD K P YT F
Sbjct: 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEF 279
Query: 394 LPPTKIDNCR--IKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451
LPP K + + D+++S GC + TV HS++G R R+ G ++D+V++G
Sbjct: 280 LPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD------ 333
Query: 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492
+G+GR IRN IIDKNV+IG+ VVI N
Sbjct: 334 -------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 392 bits (1008), Expect = e-133
Identities = 162/440 (36%), Positives = 232/440 (52%), Gaps = 53/440 (12%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN 151
KNV AIIL GG G++L PLT A PAVP G YR+ID +SNC+NSGI +I VLTQ+
Sbjct: 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYK 62
Query: 152 SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN 211
S SLN HI R + + +G V +L A Q G G+ W++GTADA+ Q + +
Sbjct: 63 SHSLNDHIGRGWPW-DLDRKNGGVFILPAQQREG--GERWYEGTADAIYQNLLIIRRS-- 117
Query: 212 RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
+ E V IL GDH+Y+MDY D + H++ AD+T++ V AS +G++ +D GRI
Sbjct: 118 -DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRII 176
Query: 272 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYPT 328
+F EKP SL ASMG+Y+F D+L +LL +
Sbjct: 177 EFVEKP-----ADGPPSNSL--------------ASMGIYIFNTDLLKELLEEDAKDPNS 217
Query: 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFY 388
S+DFG +IIP + V AY F YW D+GTI S+YEANM L P + YD P Y
Sbjct: 218 SHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIY 277
Query: 389 TSPRFLPPTKIDNCR-IKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADY 447
T + LPP K N + +++++ GC + TVE+S++ R+ G ++++V++
Sbjct: 278 TKNKNLPPAKFVNDSEVSNSLVAGGCII-SGTVENSVLFRGVRIGKGSVIENSVIMPD-- 334
Query: 448 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFY 507
+ +G +R IIDKNV IG+ VVI D E DR F
Sbjct: 335 -----------------VEIGEGAVLRRAIIDKNVVIGEGVVIGG--DKPEEDRK--RFR 373
Query: 508 IRSGITIIMEKATIEDGMVI 527
GI ++ + I+ ++
Sbjct: 374 SEEGIVVVPKGMVIKLDIME 393
|
Length = 393 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 321 bits (826), Expect = e-105
Identities = 157/466 (33%), Positives = 231/466 (49%), Gaps = 81/466 (17%)
Query: 78 MTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCI 137
L R+ ++ A+IL GG G++L LT + A PAV G +R+ID +SNCI
Sbjct: 1 EKNDSLMLARQL--TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCI 58
Query: 138 NSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG----FVEVLAATQTPGESGKNWFQ 193
NSGI +I VLTQ+ + SL RHI R G +F FV++L A Q +NW++
Sbjct: 59 NSGIRRIGVLTQYKAHSLIRHIQR-----GWSFFREELGEFVDLLPAQQR--VDEENWYR 111
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
GTADAV Q + + + V IL GDH+Y+MDY + HV+ AD T++C V
Sbjct: 112 GTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAM--QVDTSLLGFSPQEARKCPYVASMGVY 311
AS +G++ +D RI F EKP AN AM D SL ASMG+Y
Sbjct: 169 EEASAFGVMAVDENDRITAFVEKP--ANPPAMPGDPDKSL--------------ASMGIY 212
Query: 312 VFKKDVLFKLLRW--RYPTSN-DFGSEIIPAAIMEHDVQAYIFRD-----------YWED 357
VF D L++LL P S+ DFG +IIP + E V A+ F D YW D
Sbjct: 213 VFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRD 272
Query: 358 IGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI----DNCR--IKDAIISH 411
+GT+ ++++AN+ L +P YD P +T LPP K R ++++S
Sbjct: 273 VGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSG 332
Query: 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP-IGVGRN 470
GC + V S++ R R++ ++D+V+L P + VGR+
Sbjct: 333 GCIISGAVVRRSVLFSRVRVNSFSNVEDSVLL--------------------PDVNVGRS 372
Query: 471 TKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITII 515
++R C+ID+ I + +VI +D ++A R F GI ++
Sbjct: 373 CRLRRCVIDRGCVIPEGMVI-GEDPEEDAKR----FRRSEEGIVLV 413
|
Length = 425 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 317 bits (815), Expect = e-104
Identities = 147/445 (33%), Positives = 217/445 (48%), Gaps = 69/445 (15%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
V AI+L GG G +L PLT A PAVP G YRLID +SN +NSG +I+VLTQ+ S
Sbjct: 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKS 63
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SL+RHI++T+ + ++ + A Q GK W+ G+ADA+ Q + ED
Sbjct: 64 HSLDRHISQTW--RLSGLLGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDEDP- 117
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+ V + DH+YRMD + H++ A +T++ V AS +G++++D GRI
Sbjct: 118 --DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRG 175
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTS 329
F EKP A+ + D P EA +ASMG YVF D L LR +S
Sbjct: 176 FLEKP--ADPPGLPDD-------PDEA-----LASMGNYVFTTDALVDALRRDAADEDSS 221
Query: 330 NDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPA 377
+D G +IIP + Y F R YW D+GTI ++Y+A+M L P
Sbjct: 222 HDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV 281
Query: 378 FHFYDPKTPFYTSPRFLPPTKI-----DNCRIKDAIISHGCFLRECTVEHSIVGERSRLD 432
F+ Y+ + P YTS LPP K +D+++S G + TV +S++ ++
Sbjct: 282 FNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVE 341
Query: 433 YGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI-V 491
G E++D+V++ V I GR +R I+DKNV + I V
Sbjct: 342 SGAEVEDSVLM-----------------DGVRI--GRGAVVRRAILDKNVVVPPGATIGV 382
Query: 492 NKDDVQEADRPELGFYI-RSGITII 515
+ E DR F + GI ++
Sbjct: 383 DL----EEDRR--RFTVSEGGIVVV 401
|
Length = 407 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = 6e-96
Identities = 152/453 (33%), Positives = 215/453 (47%), Gaps = 93/453 (20%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K + A+IL GG GT+L LT A PAVP G YR+ID +SNC NSGI+ + VLTQ+
Sbjct: 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQP 61
Query: 153 ASLNRHIARTYFGNGTNFG----DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFED 208
LN HI G G+ + +G V +L G W++GTA A+ Q
Sbjct: 62 LELNNHI-----GIGSPWDLDRINGGVTILPPYS--ESEGGKWYKGTAHAIYQ------- 107
Query: 209 AKNRNI--------ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYG 260
NI E V IL GDH+Y+MDY + H +++AD+TI+ V AS +G
Sbjct: 108 ----NIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFG 163
Query: 261 LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320
++ D RI +F EKP N K S L ASMG+Y+F L +
Sbjct: 164 IMNTDENMRIVEFEEKP--KNPK------SNL-------------ASMGIYIFNWKRLKE 202
Query: 321 LLRWRYPT---SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376
L S+DFG +IP + E + AY F+ YW+D+GTI+S +EANM L +
Sbjct: 203 YLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPEN 262
Query: 377 AFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGV 435
+ +D Y+ LPP I +N ++K++++ GC + TVEHS++ + ++ G
Sbjct: 263 PLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVV-YGTVEHSVLFQGVQVGEGS 321
Query: 436 ELKDTV-MLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
+KD+V M GA +G N I II +N IG V+I
Sbjct: 322 VVKDSVIMPGAK--------------------IGENVVIERAIIGENAVIGDGVIIGGGK 361
Query: 495 DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
+V IT+I E I G VI
Sbjct: 362 EV---------------ITVIGENEVIGVGTVI 379
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 2e-89
Identities = 89/284 (31%), Positives = 129/284 (45%), Gaps = 44/284 (15%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINK-IFVLTQFNSASL 155
AIIL GG+GT+L+PLT A P VPV Y +I +S +N+GI + I + TQ + +
Sbjct: 2 AIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLV 61
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ FG ++V A Q GTA AV D E
Sbjct: 62 AEQLGDGS-----KFG---LQVTYALQPEPR-------GTAPAVALAADFLGDDDP---E 103
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
V +L GDH+YRMD+ + +Q + AD T++ V + YG+++ D GR+ +F E
Sbjct: 104 LVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVE 163
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDFG 333
KP K ASMG+Y F V L + D
Sbjct: 164 KPDLP--------------------KASNYASMGIYFFNSGVFLFLAKYLKELARGEDEI 203
Query: 334 SEIIPAAIMEHDVQ-AYIFRD--YWEDIGTIKSFYEANMALTKE 374
++ IPAA+ + D+ A++FR YW D+GT S +EAN+ L
Sbjct: 204 TDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLLTG 247
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 188 bits (481), Expect = 4e-57
Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL GG GT+L PLT + A PAVP G YRLID P+SN +NSGI + VLTQ+ S SLN
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLN 60
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
H+ + + +G + +L Q G +W++GTADA+ Q E + E
Sbjct: 61 DHLGSGKEWDL-DRKNGGLFILPPQQRKGG---DWYRGTADAIYQNLDYIERSDP---EY 113
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISC 248
V IL GDH+Y MDY + + H++ ADIT+
Sbjct: 114 VLILSGDHIYNMDYREMLDFHIESGADITVVY 145
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 98/402 (24%), Positives = 162/402 (40%), Gaps = 79/402 (19%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA 153
+ A+IL GG GT+L PLT P +P+AG LI+ + +G+ +I ++
Sbjct: 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAG-KPLIEYVLEALAAAGVEEIVLVV----G 55
Query: 154 SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR- 212
L I YFG+G G V+ GTA A++ A +
Sbjct: 56 YLGEQIEE-YFGDGEGLGVRITYVVEKEPL----------GTAGALKN-------ALDLL 97
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMGRIA 271
++ +L GD L +D + ++ H + A TI A S++G+V+ D GR+
Sbjct: 98 GGDDFLVLNGDVLTDLDLSELLEFHKKKGALATI--ALTRVLDPSEFGVVETDDGDGRVV 155
Query: 272 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331
+F EKP + + G+Y+F +V F + D
Sbjct: 156 EFREKPGPEEPP-------------------SNLINAGIYIFDPEV-FDYI--EKGERFD 193
Query: 332 FGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS 390
F E++PA + DV Y+F YW DIGT + EAN L + + P
Sbjct: 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVII 253
Query: 391 PR--FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYY 448
+ P I A I G + ++++GE + GVE+K+++++
Sbjct: 254 RSAYIIGPVVIG----PGAKIGPGALIG----PYTVIGEGVTIGNGVEIKNSIIM----- 300
Query: 449 QTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490
+ V +G + I + II +N KIG ++I
Sbjct: 301 -----------DNVV---IGHGSYIGDSIIGENCKIGASLII 328
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 4e-33
Identities = 70/264 (26%), Positives = 118/264 (44%), Gaps = 48/264 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT+L PLT P +P+AG +++ + +GI++I ++ + +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAG-KPILEYIIERLARAGIDEIILVVGYLGEQI- 58
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNI-E 215
YFG+G+ FG V + Q GTA AVR A++ +
Sbjct: 59 ----EEYFGDGSKFG---VNIEYVVQEEPL-------GTAGAVRN-------AEDFLGDD 97
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+ ++ GD L +D + ++ H ++ AD TI+ V S YG+V++D+ GR+ +F E
Sbjct: 98 DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEV--EDPSRYGVVELDDDGRVTRFVE 155
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
KP+ +A+ G+Y+F+ ++ + P D ++
Sbjct: 156 KPTLPE---------------------SNLANAGIYIFEPEI-LDYIPEILPRGEDELTD 193
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIG 359
IP I E V Y YW DIG
Sbjct: 194 AIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 98/415 (23%), Positives = 168/415 (40%), Gaps = 77/415 (18%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++AII + L PLT ++P G YRLID P+SN +N+GI +F+ +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE 60
Query: 153 -ASLNRHIARTYFGNGTNFG-----DG-FVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205
SL H+ G+G + DG FV + + R F+
Sbjct: 61 RQSLFDHL-----GSGREWDLHRKRDGLFVFPY---NDRDDLSEGGK-------RYFSQN 105
Query: 206 FEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
E K E +L + +D ++ H + DIT+ V + AS+Y
Sbjct: 106 LEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYD----- 160
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
I +F E ++ L +E S+ +Y+ D+L +LL
Sbjct: 161 ---TILRFDESGKVKSIG------QNLNPEEEENI------SLDIYIVSTDLLIELLY-- 203
Query: 326 YPTSNDFGSEIIPAAIM-----EHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH- 379
G ++ E ++ AY + Y +I ++KS+Y+ANM L P
Sbjct: 204 --ECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD--PQNFQ 259
Query: 380 --FYDPKTPFYTSPRFLPPTK-IDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVE 436
FY + P YT + PPT +N +++++++++GC + E VE+SI+ +
Sbjct: 260 SLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCII-EGKVENSILSRGVHVGKDAL 318
Query: 437 LKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491
+K+ +++ + I G + N IIDK+V I +V I
Sbjct: 319 IKNCIIM------QRTVI-------------GEGAHLENVIIDKDVVIEPNVKIA 354
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 3e-28
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 23/127 (18%)
Query: 395 PPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI 454
PP +K++++S GC + TVE+S++ R+ G ++D+V++
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNV-------- 52
Query: 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI 514
G+GRN IR IIDKNV I VVI + A + GI +
Sbjct: 53 -----------GIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDRAR----FYVTEDGIVV 97
Query: 515 IMEKATI 521
+ + I
Sbjct: 98 VGKGMVI 104
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 9e-16
Identities = 62/272 (22%), Positives = 105/272 (38%), Gaps = 51/272 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG GT+L + P PVAG ++ + GI++I + + L
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAG-RPFLEYLLEYLARQGISRIVLSVGY----LA 55
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR-NIE 215
I YFG+G G P GT A++ A + +
Sbjct: 56 EQI-EEYFGDGYRGG--IRIYYVIEPEP--------LGTGGAIKN-------ALPKLPED 97
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+L GD + +D + + + AD T++ V + AS YG V +D GR+ F E
Sbjct: 98 QFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFVE 155
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
K GA + GVY+ +K++L ++ S ++
Sbjct: 156 KGPGAAPG--------------------LING-GVYLLRKEILAEIP--ADAFS--LEAD 190
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367
++PA + + + Y+ DIG + + A
Sbjct: 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 9e-15
Identities = 70/281 (24%), Positives = 104/281 (37%), Gaps = 62/281 (22%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+IL GG GT+L PLT +PVAG +I + + +GI I ++
Sbjct: 3 GLILAGGKGTRLRPLTYTRPKQLIPVAG-KPIIQYAIEDLREAGIEDIGIVV-----GPT 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G+G+ FG +L G A AV D E
Sbjct: 57 GEEIKEALGDGSRFGVRITYILQEEP----------LGLAHAV----LAARDFLGD--EP 100
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+ GD+L + ++ ++ DAD +I A V + R +G+ +D+ GRI + EK
Sbjct: 101 FVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRR--FGVAVVDD-GRIVRLVEK 157
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRYPTSNDF 332
P + S L A +GVY F + L+ WR
Sbjct: 158 P--------KEPPSNL-------------ALVGVYAFTPAIFDAISRLKPSWR------- 189
Query: 333 GSEIIPAAIME-----HDVQAYIFRDYWEDIGTIKSFYEAN 368
G I AI V I +W+D GT + EAN
Sbjct: 190 GELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 72/282 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+I+ GG GT+L PLT P + V G +++ + I G ++ S+N
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGG-KPILETIIDRFIAQGFRNFYI-------SVN 52
Query: 157 --RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ-----GTADAVRQFTWVFEDA 209
+ YFG+G+ FG V + ++ + GTA A+
Sbjct: 53 YLAEMIEDYFGDGSKFG---VNI------------SYVREDKPLGTAGALSLL------- 90
Query: 210 KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 269
+ + ++ GD L ++Y + H + +AD T+ C E + YG+V+ + GR
Sbjct: 91 PEKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATV-CVREYEVQVP-YGVVETEG-GR 147
Query: 270 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329
I EKP+ ++ + G+YV + +VL
Sbjct: 148 ITSIEEKPT-----------------------HSFLVNAGIYVLEPEVL------DLIPK 178
Query: 330 NDF--GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEAN 368
N+F ++I I E V + +YW DIG + + +AN
Sbjct: 179 NEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 60/283 (21%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT++ PLT P +PVAG L++ + ++GI+ + +
Sbjct: 3 AVILAAGKGTRMRPLTETRPKPMLPVAG-KPLLEHIIEALRDAGIDDFVFVVGY----GK 57
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ R YFG+G+ G V + Q GTADA+ AK +
Sbjct: 58 EKV-REYFGDGSRGG---VPIEYVVQEEQL-------GTADALGS-------AKEYVDDE 99
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+L GD L D ++ + + +A + A V SDYG+V+ D GR+ EK
Sbjct: 100 FLVLNGDVLLDSDLLERL---IRAEAP---AIAVVEVDDPSDYGVVETDG-GRVTGIVEK 152
Query: 277 PSGA--NLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS 334
P NL + G+Y+F ++ F+LL + S
Sbjct: 153 PENPPSNL-----------------------INAGIYLFSPEI-FELLE-KTKLSPRGEY 187
Query: 335 EI---IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374
E+ + I E V+A +W D+G +AN AL
Sbjct: 188 ELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLDN 230
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 72/288 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+IL GG+GT+L PLT +PV +I P+ + +GI I ++
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPVYD-KPMIYYPLETLMLAGIRDILIVVGPEDKPTF 61
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQT-PGESGKNWFQGTADAV---RQFTWVFEDAKNR 212
+ + G+G++FG V++ A Q P G A AV F
Sbjct: 62 KEL----LGDGSDFG---VDITYAVQPEPD--------GLAHAVLIAEDFV--------- 97
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
++ + GD++++ + ++ + + TI V + YG+V+ D G++
Sbjct: 98 GDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIG 155
Query: 273 FAEKPS--GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRY 326
EKP +NL A G+Y + V K ++ R
Sbjct: 156 LEEKPKEPKSNL-----------------------AVTGLYFYDPSVFEAIKQIKPSAR- 191
Query: 327 PTSNDFG-SEIIPA--AIMEHD--VQAYIFRDYWEDIGTIKSFYEANM 369
G EI A +E V A + R +W D GT +S EAN
Sbjct: 192 ------GELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANN 233
|
Length = 286 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 83/403 (20%), Positives = 147/403 (36%), Gaps = 88/403 (21%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT+L PLT +PVA ++ + + +GI I ++ +
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPVAN-KPILQYAIEDLAEAGITDIGIVV----GPVT 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G G FG ++ G A AV D ++
Sbjct: 57 GEEIKEIVGEGERFGAKITYIVQGEP----------LGLAHAVYTARDFLGD------DD 100
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+ GD+L + F++S ++D D I V + A +G+ +++ RI + EK
Sbjct: 101 FVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVLEDGKRILKLVEK 158
Query: 277 PSG--ANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR-----WRYPTS 329
P +NL A +G+Y+F + ++F+ ++ WR
Sbjct: 159 PKEPPSNL-----------------------AVVGLYMF-RPLIFEAIKNIKPSWR---- 190
Query: 330 NDFGSEIIPAAI---MEHD--VQAYIFRDYWEDIGTIKSFYEANMALTKE-SPAFHFYDP 383
G I AI +E V +W+D G + +AN + E D
Sbjct: 191 ---GELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDD 247
Query: 384 KTPFYTSPRFLPPTKIDNCRIKD-AIISHGCFLRECTVEH-SIVGERSRLDYGVELKDTV 441
++ KI N I+ A+I C + + + +GE + E++ ++
Sbjct: 248 ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDA-EVEHSI 306
Query: 442 MLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484
+L ES I G +I + +I K V+I
Sbjct: 307 VL------DESVI------------EGVQARIVDSVIGKKVRI 331
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 68/297 (22%), Positives = 111/297 (37%), Gaps = 88/297 (29%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L+PLT + +PV +I P+S + +GI +I +++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAGIREILIIST------P 55
Query: 157 RHIARTY--FGNGTNFGDGFVEVLAATQ-TPGESGKNWFQGTADAV---RQFTWVFEDAK 210
+ G+G++ G + + A Q PG G A A +F
Sbjct: 56 EDLPLFKELLGDGSDLG---IRITYAVQPKPG--------GLAQAFIIGEEFI------- 97
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD---YGLVKIDNM 267
+ V ++ GD+++ Y + + R A A V +D YG+V+ D
Sbjct: 98 --GDDPVCLILGDNIF---YGQGLSPILQRAAAQKEG-ATVFGYEVNDPERYGVVEFDEN 151
Query: 268 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327
GR+ EKP + K Y A G+Y + DV
Sbjct: 152 GRVLSIEEKP--------------------KKPKSNY-AVTGLYFYDNDVF--------- 181
Query: 328 TSNDFGSEIIPAAIME---HDV-QAYIFR-----------DYWEDIGTIKSFYEANM 369
+ ++ P+A E DV Y+ + W D GT +S EA+
Sbjct: 182 ---EIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 98 IILGGGAGTKLFPLTLRAATPAVPVAGCYR--LIDIPMSNCINSGINKIFVLTQFNSASL 155
IIL GG+GT+L+P+T + +P+ Y +I P+S + +GI I +++
Sbjct: 3 IILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 59
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ + G+G+ +G V + A Q + D + Q + ED +
Sbjct: 60 FQQL----LGDGSQWG---VNLSYAVQP-----------SPDGLAQAFIIGEDFIGG--D 99
Query: 216 NVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
A++ GD++ Y D D ++ R++ T+ V + YG+V+ D+ GR
Sbjct: 100 PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPER--YGVVEFDSNGRAISIE 157
Query: 275 EKPS 278
EKP+
Sbjct: 158 EKPA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYD-KPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGG 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQNGTAI 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
|
Length = 292 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L G G++ PLT +PVA LID + +G+ ++FV+ +S ++
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPVANVP-LIDYTLEWLEKAGVEEVFVVCCEHSQAII 61
Query: 157 RHI 159
H+
Sbjct: 62 EHL 64
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-05
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 467 VGRNTKIRNCIIDKNVKIGKDVVIVNK---DDVQEADRPELGFYIRSGITIIMEKATIED 523
+G T I+N +I +N KIGK+VVI N DDV D + I + +I + TI
Sbjct: 8 IGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPP 67
Query: 524 GMVI 527
G +I
Sbjct: 68 GSLI 71
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 70/311 (22%), Positives = 106/311 (34%), Gaps = 81/311 (26%)
Query: 97 AIILGGGAGTKLFPLTLRAATPA--VPVAGCYRLIDIP-----MSNCINSGINKIFVLTQ 149
A+I G GT+ P T A P +P+ +D P + + +GI I ++T
Sbjct: 3 AVIPAAGLGTRFLPAT--KAIPKEMLPI------VDKPVIQYIVEEAVAAGIEDIIIVTG 54
Query: 150 FNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF--Q----GTADAVRQFT 203
++ H R+Y T G ++L + + + Q G AV
Sbjct: 55 RGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAV---- 110
Query: 204 WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADI----------TISCAAVGE 253
+ E A+L GD D I S + I+ V
Sbjct: 111 LCAKPFIGD--EPFAVLLGD--------DLIDSKEPCLKQLIEAYEKTGASVIAVEEVPP 160
Query: 254 SRASDYGLVKI----DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPY-VASM 308
S YG+VK ++ ++ EKP P+EA P +A +
Sbjct: 161 EDVSKYGIVKGEKIDGDVFKVKGLVEKPK-----------------PEEA---PSNLAIV 200
Query: 309 GVYVFKKDVLFKLLRWRYPTSNDFGSEI-----IPAAIMEHDVQAYIFRDYWEDIGTIKS 363
G YV D+ F +L P G EI I + E V AY+F D G
Sbjct: 201 GRYVLTPDI-FDILENTKP---GKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLG 256
Query: 364 FYEAN--MALT 372
+ +A AL
Sbjct: 257 YLKATVEFALK 267
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 30/135 (22%)
Query: 232 DFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTS 290
+ + H A+ TI V + S YG+V D N GRI +F EKP
Sbjct: 119 ELLDFHKKHGAEGTILVTKVEDP--SKYGVVVHDENTGRIERFVEKP------------- 163
Query: 291 LLGFSPQEARKCPYVASMGVYVFKKDVLFKL-LRWRYPTSNDFGSEIIPAAIMEHDVQAY 349
+ A G+Y+ VL ++ LR PTS EI P E + AY
Sbjct: 164 ------KVFVGNKINA--GIYILNPSVLDRIPLR---PTS--IEKEIFPKMASEGQLYAY 210
Query: 350 IFRDYWEDIGTIKSF 364
+W DIG K F
Sbjct: 211 ELPGFWMDIGQPKDF 225
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 75/356 (21%), Positives = 124/356 (34%), Gaps = 89/356 (25%)
Query: 190 NWFQ-----GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDA 242
NW GT AV Q D +V +L GD L + + +++H R
Sbjct: 67 NWVLQAEQLGTGHAVLQALPFLPDD-----GDVLVLYGDVPLISAETLERLLEAH--RQN 119
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAE-KPSGANLKAMQ-VDTSLLGFSPQEAR 300
IT+ A + + + YG + +N G++ E K + A KA++ ++T
Sbjct: 120 GITLLTAKLPD--PTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINT----------- 166
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSND------FGSEIIPAAIMEHD-VQAYIFRD 353
GVYVF L RW SN+ + +++I A+ + + V+A D
Sbjct: 167 --------GVYVFDGA---ALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDD 215
Query: 354 YWEDIG--TIKSFYEANMALTKESPAFH------FYDPKTPF-------------YTSPR 392
E +G + L + DP +
Sbjct: 216 SDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVI 275
Query: 393 FLPPTKIDN-------CRIKDAIISHGCFLRE-CTVEHSIVGERS------RLDYGVELK 438
KI + C IK+++I ++ +E S +GE RL G L
Sbjct: 276 LEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG 335
Query: 439 DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
V +G E++ A + K G + + + I NV IG + N D
Sbjct: 336 AGVHIGN---FVETKNARIGKGSKA----GHLSYLGDAEIGSNVNIGAGTITCNYD 384
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG G++L+PLT +PVA +I P+ +G + V+ +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVAN-KPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQF 202
R++ N D EV GTAD++R
Sbjct: 62 STYLRSFPLNLKQKLD---EVTIVLDED--------MGTADSLRHI 96
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 95/454 (20%), Positives = 152/454 (33%), Gaps = 115/454 (25%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAV--PVAGCYRLIDIPMSNCINSGINKIFVLTQF 150
+++A+IL G GT++ ++ P V PVAG PM + I+ L
Sbjct: 1 MSLSAVILAAGKGTRM-----KSDLPKVLHPVAG------KPM---LEHVIDAARALG-- 44
Query: 151 NSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF-----QGTADAVRQFTWV 205
I G G +V A + + GT AV Q
Sbjct: 45 -----PDDIVVVV-------GHGAEQVREALAERDDV--EFVLQEEQLGTGHAVLQALPA 90
Query: 206 FEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAVGESRASD---YG 260
D + +V +L GD L + + + + +H A T+ A D YG
Sbjct: 91 LADDYD---GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA-----ELDDPTGYG 142
Query: 261 LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320
+ D G + E + D S +E ++ + + G+Y F L +
Sbjct: 143 RIVRDGNGEVTAIVE----------EKDAS------EEEKQIKEINT-GIYAFDGAALLR 185
Query: 321 LLRWRYPTSNDFG----SEIIPAAIMEH-DVQAYIFRDYWEDIG--TIKSFYEANMALTK 373
L + +N G +++I A E V+A D E +G EA + +
Sbjct: 186 ALP-KLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQR 244
Query: 374 ESPAFH------FYDPKTPF-------------YTSPRFLPPTKID-------NCRIKDA 407
DP T + + T I IKD+
Sbjct: 245 RIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDS 304
Query: 408 IISHGCFLRECTV-EHSIVGERS------RLDYGVELKDTVMLGADYYQTESEIASLLAE 460
+I ++ +V E S VGE + RL G L V +G E + A++
Sbjct: 305 VIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGN---FVEVKKATIGKG 361
Query: 461 GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
K G T + + I +NV IG + N D
Sbjct: 362 SK----AGHLTYLGDAEIGENVNIGAGTITCNYD 391
|
Length = 460 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 31/135 (22%)
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAV 251
GT AV+Q A +V +L GD L + + +++H + AD+T+ A
Sbjct: 74 GTGHAVKQA----LPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTA-- 127
Query: 252 GESRASD---YGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308
D YG + D G++ + E + D + E K +
Sbjct: 128 ---ELEDPTGYGRIIRDGNGKVLRIVE----------EKDAT-------EEEKAIREVNA 167
Query: 309 GVYVFKKDVLFKLLR 323
G+Y F + LF+ L
Sbjct: 168 GIYAFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFV 146
A+IL G GT++ PLT P VPVAG + LID + +GI +I V
Sbjct: 2 AMILAAGLGTRMRPLTDTRPKPLVPVAG--KPLIDHALDRLAAAGIRRIVV 50
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 527 | |||
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 100.0 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.97 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.97 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.95 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.95 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.94 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.92 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.92 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.9 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.89 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.87 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.83 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.79 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.78 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.75 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.61 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.6 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.6 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.59 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.55 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.54 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.54 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.53 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.52 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.52 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.51 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.5 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.45 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.44 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.43 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.42 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.41 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.41 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.35 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.34 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.34 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.31 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.3 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.3 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.3 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.27 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.27 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.23 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.21 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.21 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.2 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.2 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.2 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.19 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.19 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.19 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.19 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.18 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.17 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.16 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.16 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.16 | |
| PLN02296 | 269 | carbonate dehydratase | 99.15 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.15 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.14 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.12 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.12 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.12 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.11 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.11 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.1 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 99.1 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.09 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.09 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.08 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.08 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.08 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.07 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.07 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.06 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.05 | |
| PLN02472 | 246 | uncharacterized protein | 99.04 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.03 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.03 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.03 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.01 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.01 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.0 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.0 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.99 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.99 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 98.99 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.99 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.98 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 98.97 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.97 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 98.93 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.93 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.93 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.93 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.92 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.92 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 98.91 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.9 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.88 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.88 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.87 | |
| PLN02296 | 269 | carbonate dehydratase | 98.86 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.86 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.86 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.83 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.83 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.81 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.8 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.79 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.78 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.77 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.77 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.76 | |
| PLN02472 | 246 | uncharacterized protein | 98.76 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.75 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.74 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.74 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.74 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.72 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.71 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.71 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.7 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.67 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.63 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.61 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.6 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.57 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.57 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.56 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.55 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.54 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.54 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.53 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.53 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.52 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.5 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.5 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.49 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.49 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.49 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.46 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.43 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.42 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.41 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.4 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.39 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.39 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.38 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.35 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.34 | |
| PLN02357 | 360 | serine acetyltransferase | 98.34 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.32 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.31 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.3 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.3 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.29 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.29 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.27 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.27 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.22 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.19 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.18 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 98.16 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 98.16 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.16 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.15 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.14 | |
| PLN02739 | 355 | serine acetyltransferase | 98.13 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.13 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.13 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.12 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.1 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.08 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 98.07 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 98.05 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 98.05 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.03 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.03 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.02 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.0 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 97.96 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 97.96 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 97.96 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 97.95 | |
| PLN02357 | 360 | serine acetyltransferase | 97.92 | |
| PLN02694 | 294 | serine O-acetyltransferase | 97.89 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 97.84 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 97.83 | |
| PLN02739 | 355 | serine acetyltransferase | 97.82 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.81 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 97.81 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.81 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 97.79 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 97.79 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 97.69 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.66 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 97.65 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 97.59 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 97.51 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.44 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.42 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.29 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.23 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.13 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.12 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 96.83 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 96.8 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.53 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 96.3 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 96.16 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 95.84 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 95.32 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 95.21 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.03 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 94.39 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 93.65 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 93.36 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 92.45 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 89.46 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 82.23 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 82.04 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 80.93 |
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-76 Score=581.56 Aligned_cols=367 Identities=43% Similarity=0.700 Sum_probs=331.9
Q ss_pred ccCCCCCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhcc
Q 009720 86 ERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFG 165 (527)
Q Consensus 86 ~~~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~ 165 (527)
+..+.+ +.|+|+||.||.||||+|||.++||||+|++++ |||+|+|++|+++||++|++.++|+++++++|+.+.|
T Consensus 2 ~~~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y-- 77 (371)
T KOG1322|consen 2 ETRPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY-- 77 (371)
T ss_pred Cccccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh--
Confidence 345566 899999999999999999999999999999987 9999999999999999999999999999999999998
Q ss_pred CCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEE
Q 009720 166 NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADIT 245 (527)
Q Consensus 166 ~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~t 245 (527)
+.+++ |+++...|++ +.|++||++++|+.+|.+++ .+|+||+||++|++||++|+|+|+++++++|
T Consensus 78 -~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~T 143 (371)
T KOG1322|consen 78 -GKELG---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEIT 143 (371)
T ss_pred -hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceE
Confidence 33565 9999988875 68999999999999998873 4899999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCceEEEECC-CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHh
Q 009720 246 ISCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~D~-~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~ 324 (527)
+++.++++ +++||+|++|+ +|+|.+|.|||+. +.+ +-.++|+|+|++++|++++
T Consensus 144 I~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd--~vs-------------------nkinaGiYi~~~~vL~ri~-- 198 (371)
T KOG1322|consen 144 IVVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKD--LVS-------------------NKINAGIYILNPEVLDRIL-- 198 (371)
T ss_pred EEEEeccC--ccccceEEEecCCCceeEehhCchh--hhh-------------------ccccceEEEECHHHHhHhh--
Confidence 99999998 89999999999 8999999999994 333 3456999999999999886
Q ss_pred hCCCCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeeceee
Q 009720 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRI 404 (527)
Q Consensus 325 ~~~~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i 404 (527)
.+|+ ++++|++|.+++++++++|.++|||+|||+|+||+++ +.||+.+.|.++++++.||+.+.++++
T Consensus 199 ~~pt--SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g----------~~~Yl~s~~~~t~~r~~p~~~i~~nvl 266 (371)
T KOG1322|consen 199 LRPT--SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTG----------FSFYLRSLPKYTSPRLLPGSKIVGNVL 266 (371)
T ss_pred hccc--chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHH----------HHHHHhhCcccCCccccCCccccccEe
Confidence 4454 4899999999999999999999999999999999999 668888999999999999999999999
Q ss_pred eeeEEC--CCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCC
Q 009720 405 KDAIIS--HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (527)
Q Consensus 405 ~~s~I~--~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~ 482 (527)
.|++++ ++|.|+ .||+||+||+|++|++|++|+||++++|++++++++++.++++|++++. +|++|+
T Consensus 267 vd~~~~iG~~C~Ig----~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~-------~id~~a 335 (371)
T KOG1322|consen 267 VDSIASIGENCSIG----PNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA-------RIDKNA 335 (371)
T ss_pred eccccccCCccEEC----CCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce-------EEeccc
Confidence 887655 455555 3499999999999999999999999999999999999999996555554 999999
Q ss_pred EECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeC
Q 009720 483 KIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 522 (527)
Q Consensus 483 ~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~ 522 (527)
+||+||+|.|.+.++++ +++++++|+++|.++++|.
T Consensus 336 ~lG~nV~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 336 VLGKNVIVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred EeccceEEecccccccc----eeEEeccceeecccccccC
Confidence 99999999999999887 8899999999999999874
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-75 Score=593.36 Aligned_cols=386 Identities=41% Similarity=0.709 Sum_probs=351.4
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCcc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTN 169 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~ 169 (527)
.++++-|+|||||.|+||.|||+.|+||.+|+||||+|||++|+||.|+||++|+|+|+|++.+|.+||.+.| |+.+.
T Consensus 2 ~~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~- 80 (393)
T COG0448 2 MKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR- 80 (393)
T ss_pred CccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc-
Confidence 3678899999999999999999999999999999999999999999999999999999999999999998766 54432
Q ss_pred cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
..+++.++++.+. +.++.||+|||+|++|-++++++ ...+.+|+++|||+|++||.+++++|+++++|+|+++.
T Consensus 81 -~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~ 154 (393)
T COG0448 81 -KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVK 154 (393)
T ss_pred -ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEE
Confidence 2357999988765 34567999999999999999984 56799999999999999999999999999999999999
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC--
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~-- 327 (527)
+++.+++++||++.+|++|+|++|.|||.... + ...++|||+|+|++++|.++|++...
T Consensus 155 ~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~----~---------------~~~laSMgiYIf~~~~L~~~L~~~~~~~ 215 (393)
T COG0448 155 EVPREEASRFGVMNVDENGRIIEFVEKPADGP----P---------------SNSLASMGIYIFNTDLLKELLEEDAKDP 215 (393)
T ss_pred ECChHhhhhcCceEECCCCCEEeeeeccCcCC----c---------------ccceeeeeeEEEcHHHHHHHHHHHhccc
Confidence 99999999999999999999999999998621 0 11379999999999999999987653
Q ss_pred -CCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeec-eeee
Q 009720 328 -TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIK 405 (527)
Q Consensus 328 -~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~-~~i~ 405 (527)
+..||+.++||.+++++++++|+|+|||.||||+++|++||++|++..+.+.+|+++|||||.....||+++.+ ..+.
T Consensus 216 ~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~ 295 (393)
T COG0448 216 NSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVS 295 (393)
T ss_pred CccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEe
Confidence 35789999999999999999999999999999999999999999997788999999999999999999999954 7789
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
+|.|+.||.|.+ +|.||+|+.+++|+++|.|++|++|++ ++||+||+|++|||++||+|+
T Consensus 296 nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~ 355 (393)
T COG0448 296 NSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIG 355 (393)
T ss_pred eeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeC
Confidence 999999999986 999999999999999999999999999 999999999999999999999
Q ss_pred CCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 486 KDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+|++|++.. ++.++.. +.+. .|++||++++.++.+.+
T Consensus 356 ~g~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 356 EGVVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CCcEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 999999875 5666666 6666 99999999999998765
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=562.22 Aligned_cols=434 Identities=76% Similarity=1.262 Sum_probs=382.1
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~ 170 (527)
|++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| ++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 678999999999999999999999999999999889999999999999999999999999999999997655 4433334
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
..+.+.++...|.. ..+.|++||+++++++++++++....+.++||+++||++++.|+.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 33446776655532 1234789999999999988874221125899999999999999999999999999999999998
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
++.+++++||++.+|++++|.+|.|||..+....+++++++|++++.+....++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87666789999999999999999999976656678899999998886555556899999999999999878876655555
Q ss_pred chhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEE
Q 009720 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 409 (527)
Q Consensus 331 d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I 409 (527)
+|..++++.++.+ .++++|.++|||.|||+|++|++||+.++...+....+++.+++++..+..||+.+.+++|.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7888999999987 689999999999999999999999999998777666777888999988888999998899989999
Q ss_pred CCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcE
Q 009720 410 SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVV 489 (527)
Q Consensus 410 ~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~ 489 (527)
+++|.|+++.|.+|+||++|+|++||+|.++++|+.++|++......+...|.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999997889999999999999999999999999988888766666666777777999999999999999999999999
Q ss_pred EeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 490 IVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 490 i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
|.+.+++.+..+++++++|.+|+++||+++.|++|++|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999999899999999999986
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=537.52 Aligned_cols=428 Identities=57% Similarity=1.004 Sum_probs=370.2
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.|.-. .+.
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~--~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD--GFS 78 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc--ccC
Confidence 568899999999999999999999999999999989999999999999999999999999999999996543111 111
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.+.+.++...|.. ....|++||++||+++++++++ ...++|||++||++++.|+.+|++.|++.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 2335555544432 1234668999999999999863 2247899999999999999999999999999999999887
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d 331 (527)
+.+++..||++.+|++|+|..|.|||.....+.+.+++++|...+.+.....+++++|+|+|++++|..+++... ...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-Chhh
Confidence 655577899999999999999999998655555667777776666665556679999999999999977776542 2346
Q ss_pred hhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh-ccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEEC
Q 009720 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (527)
Q Consensus 332 ~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll-~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~ 410 (527)
+..++++.++++.++++|.+++||.|+||+++|++||+.++ ...+....+.+.+++++...+.||+.+..++|.++.||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77799999998899999999999999999999999999998 55566667778899999999999999988899999999
Q ss_pred CCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEE
Q 009720 411 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490 (527)
Q Consensus 411 ~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i 490 (527)
++|.|.++.|.+|+||++|+||+||+|.+|++|+.++|..++.-..++-.+..++.||++|.|++|+|+++++||++++|
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 99999768899999999999999999999999999988887777777778888899999999999999999999999999
Q ss_pred eCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 491 VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 491 ~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.|.+.+.++++..+|++|..|+++|++++++++||.|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 393 VNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9999999999999999999999999999999999875
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=484.73 Aligned_cols=385 Identities=36% Similarity=0.637 Sum_probs=316.6
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
.|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| ... ..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTW-RLS-GL 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCc-Ccc-cc
Confidence 4788999999999999999999999999999999989999999999999999999999999999999996443 110 01
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
....+..+...+. .++.|++||++||+++++++.+ ...++|||++||++++.|+.+++++|+++++++|+++..
T Consensus 80 ~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 1112222111111 1245778999999999999963 122569999999999999999999999999999999887
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~--- 327 (527)
++.+.++.||++.+|++|+|+.|.|||...... .. ...+.++++|+|+|++++|.+++++...
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 654456789999999999999999998643210 00 0124689999999999998777765321
Q ss_pred CCCchhhhhHHhhhhcCceEEEEe------------cceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCC
Q 009720 328 TSNDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (527)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~~~~------------~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~ 395 (527)
...++..++++.+++++++++|.+ ++||.||||+++|++||+.+++..+.+.++++..++++..+..+
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 234677899999999999999977 59999999999999999999987777777778888998888888
Q ss_pred Ceeeec-e----eeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCC
Q 009720 396 PTKIDN-C----RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (527)
Q Consensus 396 p~~i~~-~----~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 470 (527)
|+.+.. . .+.+++|+++|.|+++.|++|+||++|+|+++|+|+++++|.+ +.||++
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~ 360 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRG 360 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCC
Confidence 887743 2 5689999999999878999999999999999999999999988 999999
Q ss_pred cEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEe-cCeEEEccCCEe
Q 009720 471 TKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR-SGITIIMEKATI 521 (527)
Q Consensus 471 ~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~-~g~~vi~~~~~I 521 (527)
|+|.+|+|+++++|+++++|.+. . +.+ +++++|. +|+++|++|++|
T Consensus 361 ~~i~~~ii~~~~~i~~~~~i~~~--~-~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 361 AVVRRAILDKNVVVPPGATIGVD--L-EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CEEEeeEECCCCEECCCCEECCC--c-ccc--ccceEeccceEEEeCCCCCC
Confidence 99999999999999999999874 1 333 4588884 899999998865
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-57 Score=474.38 Aligned_cols=373 Identities=37% Similarity=0.625 Sum_probs=314.8
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~ 170 (527)
|++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.... |+....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 678999999999999999999999999999999988999999999999999999999999999988885211 221111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
...++++...+.. ..+.|++||++||+++++++.+ ...++|||++||++++.++.++++.|+++++++|+++..
T Consensus 80 -~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 1235665322221 2345789999999999999862 123689999999999999999999999989999988877
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~--- 327 (527)
.+.++++.||++.+|++|+|.+|.|||..+. +.++++|+|+|++++|..+++....
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 6555577899999998899999999986432 3578999999999998777765432
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeec-eeee
Q 009720 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIK 405 (527)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~-~~i~ 405 (527)
...+|..++++.++++ .++++|.+++||.|+||+++|++||+.++...+...++++.+.+++.+.+.+|+.|++ ++|.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2346778999999976 6899999999999999999999999999987766667788888888888999999964 8889
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
++.|+++|.|+ +.+.+|+||++|+|+++|+|++++++.+ +.||++++|.+|+|+++++|+
T Consensus 293 ~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~ 352 (380)
T PRK05293 293 NSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIG 352 (380)
T ss_pred cCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEEC
Confidence 99999999997 5688999999999999999999999988 999999999999999999999
Q ss_pred CCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 486 KDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+++.+.++.. +..+||++++|+++++|
T Consensus 353 ~~~~i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 353 DGVIIGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred CCCEEcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 9999987531 13678999999999875
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=470.69 Aligned_cols=388 Identities=36% Similarity=0.627 Sum_probs=318.9
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccC-Ccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN-GTN 169 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~-~~~ 169 (527)
.+++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| +. ...
T Consensus 12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~~ 90 (425)
T PRK00725 12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGW-SFFREE 90 (425)
T ss_pred hhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhh-cccccC
Confidence 3577999999999999999999999999999999955999999999999999999999999999999997543 11 001
Q ss_pred cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
....+.++...+.. ..+.|++||++|++++++++++ ...++|||++||++++.++.++++.|+++++++|+++.
T Consensus 91 -~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~ 164 (425)
T PRK00725 91 -LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACL 164 (425)
T ss_pred -CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEE
Confidence 11345666544432 1235778999999999999863 22468999999999999999999999999999999998
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC---
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY--- 326 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~--- 326 (527)
+++.+++..||++.+|++++|++|.|||..+.. ++ . ...++++++|+|+|++++|..+|++..
T Consensus 165 ~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~----------~--~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~ 230 (425)
T PRK00725 165 EVPREEASAFGVMAVDENDRITAFVEKPANPPA--MP----------G--DPDKSLASMGIYVFNADYLYELLEEDAEDP 230 (425)
T ss_pred ecchhhcccceEEEECCCCCEEEEEECCCCccc--cc----------c--CccceEEEeeEEEEeHHHHHHHHHHhhcCC
Confidence 775555778999999988999999999864320 00 0 012468999999999999877776532
Q ss_pred CCCCchhhhhHHhhhhcCceEEEEec-----------ceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCC
Q 009720 327 PTSNDFGSEIIPAAIMEHDVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (527)
Q Consensus 327 ~~~~d~~~dii~~li~~~~V~~~~~~-----------g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~ 395 (527)
....+|.+|+++.++++.++++|.++ +||.||||+++|++||+.++...+...+++...++++.....|
T Consensus 231 ~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~ 310 (425)
T PRK00725 231 NSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLP 310 (425)
T ss_pred CccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCC
Confidence 12346778999999999999999996 5999999999999999999987776667777888988888888
Q ss_pred Ceeee------ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 396 PTKID------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 396 p~~i~------~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
|+.+. .+.+.+|+|++||+|.++.|.+|+||++|+|+++|+|++|++|++ +.||+
T Consensus 311 ~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~ 371 (425)
T PRK00725 311 PAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGR 371 (425)
T ss_pred CCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECC
Confidence 88662 145789999999999878899999999999999999999999998 99999
Q ss_pred CcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEE-ecCeEEEccCCEeCC
Q 009720 470 NTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITIIMEKATIED 523 (527)
Q Consensus 470 ~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i-~~g~~vi~~~~~I~~ 523 (527)
+|+|.+|||+++++|+++++|+... .++ +++.+| ..|+++|++++.+.-
T Consensus 372 ~~~i~~~ii~~~~~i~~~~~i~~~~-~~~----~~~~~~~~~~~~~i~~~~~~~~ 421 (425)
T PRK00725 372 SCRLRRCVIDRGCVIPEGMVIGEDP-EED----AKRFRRSEEGIVLVTREMLDKL 421 (425)
T ss_pred CCEEeeEEECCCCEECCCCEECCCC-CCC----CceeEecCccEEEECCCccccc
Confidence 9999999999999999999996442 222 334555 889999999977643
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=426.52 Aligned_cols=356 Identities=50% Similarity=0.852 Sum_probs=289.8
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.||||+|||+++||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.| +.. ......++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGW-DFD-GFIDGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhcc-Ccc-CccCCCEE
Confidence 6999999999999999999999999999967999999999999999999999999999999997433 111 00012356
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++...+. +..+.|++||+++++.+++++++ ...++|++++||++++.++.++++.|++.++++++++.+.+.+.+
T Consensus 79 ~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~ 153 (361)
T TIGR02091 79 LLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEA 153 (361)
T ss_pred EeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhc
Confidence 6543332 12345778999999999998863 124689999999999999999999999888888988887765556
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---CCCchh
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFG 333 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~---~~~d~~ 333 (527)
..||++.+|++++|..|.|||..+... .+. + ..+++++|+|+|++++|..+++.... ...+|.
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~~~--------~~~-~-----~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 219 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPPSI--------PGM-P-----DFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCcccc--------ccc-c-----cccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccH
Confidence 789999999889999999998543210 000 0 12479999999999998666665321 234567
Q ss_pred hhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCC-CccCCCeeeec-eeeeeeEECC
Q 009720 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS-PRFLPPTKIDN-CRIKDAIISH 411 (527)
Q Consensus 334 ~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~-~~~~~p~~i~~-~~i~~s~I~~ 411 (527)
.++++.+++++++++|.++++|.||||+++|++|++.++++.+....+....++.+. ..+.+++.+++ +.|.+|+||+
T Consensus 220 ~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~ 299 (361)
T TIGR02091 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299 (361)
T ss_pred HHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECC
Confidence 799999999999999999999999999999999999999876544344444555433 34556677765 5788999999
Q ss_pred CCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 412 g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
+|.|+++.|.+|+||++|+|+++|+|.+|+++++ +.||++++|++|+||++++|+++++|+
T Consensus 300 ~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 300 GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred CCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeC
Confidence 9999987899999999999999999999999988 899999999999999999999999997
Q ss_pred C
Q 009720 492 N 492 (527)
Q Consensus 492 ~ 492 (527)
|
T Consensus 361 ~ 361 (361)
T TIGR02091 361 N 361 (361)
T ss_pred C
Confidence 5
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=429.38 Aligned_cols=350 Identities=24% Similarity=0.410 Sum_probs=278.4
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCch-hHHHHHHHhh-ccCCccc
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTY-FGNGTNF 170 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~-~i~~hl~~~y-~~~~~~~ 170 (527)
+.|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|..+ ++.+|+.+.. |+.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3689999999999999999999999999999997899999999999999999999999987 8988885321 2211110
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
. +...++ .+.. +.|..|++++++++++++++ ...++|||++||++++.||.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~----~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDR----DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCC----CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 0 111111 1211 12334777889999888852 123789999999999999999999999999999999988
Q ss_pred cCCCCCCCc-eEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-
Q 009720 251 VGESRASDY-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (527)
Q Consensus 251 ~~~~~~~~~-g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~- 328 (527)
++...+..| +++..|++|+|..+.+++... .+..+++|+|+|++++|..+++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPE---------------------EEENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCC---------------------CcceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 764345667 456777778888875433221 124568999999999887676654332
Q ss_pred CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccC-CCCCCCCCCCccCCCeeee-ceeeee
Q 009720 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKID-NCRIKD 406 (527)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~-~~~~~i~~~~~~~~p~~i~-~~~i~~ 406 (527)
..++..++++.++++.++++|.+++||.||||+++|.+||++++++......+ ....++++.....+|+.|. +++|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 22445688998888889999999999999999999999999999775332222 2334666666667999995 488999
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECC
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (527)
|+||+||.|+ +.|++|+||++|+|++||+|.+++++++ +.|++++.|.+|+||++++||+
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~ 349 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEP 349 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECC
Confidence 9999999997 6799999999999999999999999988 9999999999999999999999
Q ss_pred CcEEeCC
Q 009720 487 DVVIVNK 493 (527)
Q Consensus 487 ~~~i~~~ 493 (527)
++.+.+.
T Consensus 350 ~~~~~~~ 356 (369)
T TIGR02092 350 NVKIAGT 356 (369)
T ss_pred CCEeCCC
Confidence 9999764
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-51 Score=423.91 Aligned_cols=352 Identities=26% Similarity=0.453 Sum_probs=282.2
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
.|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.+.|+++|+|+++|..+++.+|+...+ .++ .
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~-----~~~-~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE-----GLG-V 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc-----ccC-C
Confidence 48999999999999999999999999999999 9999999999999999999999999999987775321 222 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.++++.... ++||+++|+++.+++. .++|++++||++++.|+.+++++|+++.+..++...++.+
T Consensus 74 ~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 74 RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC
Confidence 245444333 2699999999998885 2799999999999999999999999988888888888877
Q ss_pred CCCCCceEEEECCC-CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009720 254 SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (527)
Q Consensus 254 ~~~~~~g~v~~D~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~ 332 (527)
+ +.||++..+++ ++|.+|.|||..... .++++++|+|+|++++|. +++. ....+|
T Consensus 139 ~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~~ 194 (358)
T COG1208 139 P--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFDF 194 (358)
T ss_pred C--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCcccc
Confidence 5 78999998844 599999999953110 247999999999999997 3332 234567
Q ss_pred hhhhHHhhhhcCc-eEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCC---CCCCCccCCCeeeeceeeeeeE
Q 009720 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP---FYTSPRFLPPTKIDNCRIKDAI 408 (527)
Q Consensus 333 ~~dii~~li~~~~-V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~---i~~~~~~~~p~~i~~~~i~~s~ 408 (527)
..++++.++++.. +++|.++|||.|||||+||.+|+..+.+............+ +.. +.+.+|+++.. ++.
T Consensus 195 ~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~~ 269 (358)
T COG1208 195 EEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GAK 269 (358)
T ss_pred hhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CCE
Confidence 7789999999986 99999999999999999999999999965433211000000 111 23334444433 455
Q ss_pred ECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCc
Q 009720 409 ISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 488 (527)
Q Consensus 409 I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~ 488 (527)
|+++|.|+ .+|+||++|+|+.+++|+++++|++ +.||++++|.+|||+.|++||++.
T Consensus 270 i~~~~~i~----~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~ 326 (358)
T COG1208 270 IGPGALIG----PYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL 326 (358)
T ss_pred ECCCCEEC----CCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce
Confidence 55555555 3599999999999999999999998 999999999999999999999932
Q ss_pred EEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 489 VIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 489 ~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+ +.+ ..++.++.+..| +++++++.+.+++++
T Consensus 327 -~-----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 327 -I-----IGD-VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred -e-----ecc-eEecCceEEcCc-eEeCCCccccCcccc
Confidence 2 778 888888899888 566999998888753
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=388.06 Aligned_cols=327 Identities=20% Similarity=0.349 Sum_probs=251.6
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEecc-CchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~-~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++ ..+++.+|+.. +..|+. .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-----~~~~~~-~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-----GERFGA-K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-----ccccCc-e
Confidence 589999999999999999999999999999 999999999999999999999999 88888888752 123331 1
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
+.++. +. ++.||+++++.++++++ .++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus 74 ~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~- 137 (353)
T TIGR01208 74 ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD- 137 (353)
T ss_pred EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 33332 21 23699999999998885 2689999999999999999999999999999999988765
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~ 332 (527)
+..||++.+|++++|.+|.|||.... +...++|+|+|++.++. ++++..+. ...+
T Consensus 138 -~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~ 194 (353)
T TIGR01208 138 -PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELE 194 (353)
T ss_pred -hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEE
Confidence 46799988877789999999987432 35789999999997665 55544332 2234
Q ss_pred hhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeec-eeeeeeEEC
Q 009720 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIIS 410 (527)
Q Consensus 333 ~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~-~~i~~s~I~ 410 (527)
..++++.++++ .++++|.+++||.|||||+||++||+.++.+... .+ .++.+.+.+.+|+.|.+ +.|.+++|+
T Consensus 195 l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~----~~i~~~~~i~~~~~i~~~~~i~~~~i~ 269 (353)
T TIGR01208 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EV----QGVDDESKIRGRVVVGEGAKIVNSVIR 269 (353)
T ss_pred HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-cc----CCcCCCCEEcCCEEECCCCEEeCCEEE
Confidence 57899999877 5899999999999999999999999999975321 11 12455566667777743 666666665
Q ss_pred CCCEEc-ceeEeecEEcCCcEECCCCEEe-----eeEEeCCcccCchhhHHhhhcCCccceEeCCC-cEEeeeEEcCCCE
Q 009720 411 HGCFLR-ECTVEHSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVK 483 (527)
Q Consensus 411 ~g~~I~-~~~i~~svIg~~~~I~~~~~I~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~-~~I~~~iI~~~~~ 483 (527)
.+|.|+ +|.|.+|+|+++|+|+++|+|+ +++++.+ +.|+.+ +.+.+|+|+++++
T Consensus 270 ~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred CCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCCE
Confidence 556666 3555566666666666666655 4444444 677776 4777888888888
Q ss_pred ECCCcEEeC
Q 009720 484 IGKDVVIVN 492 (527)
Q Consensus 484 Ig~~~~i~~ 492 (527)
|++++.|.+
T Consensus 331 i~~~~~~~~ 339 (353)
T TIGR01208 331 IKGNRRRPG 339 (353)
T ss_pred ECCCccccc
Confidence 888887764
|
Alternate name: dTDP-D-glucose synthase |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=375.65 Aligned_cols=390 Identities=21% Similarity=0.297 Sum_probs=277.4
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|++++|||||||.|+||++ .+||||+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+.
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~--------- 67 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD--------- 67 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC---------
Confidence 5678999999999999974 689999999999 999999999999999999999999988887777421
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
..+.++...+ ++||+++++.+++++++ ..++|++++||+ +...++.++++.|.+.++++++...
T Consensus 68 -~~i~~~~~~~---------~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 68 -GDVSFALQEE---------QLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred -CceEEEecCC---------CCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 0144432211 25999999999998862 247899999998 4467899999999888888888887
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~- 328 (527)
+.++ +..|+.+.+|++|+|..+.|||...... ..++++++|+|+|++++|.+++++..+.
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 7765 4579999999899999999987432100 0236789999999999876667654332
Q ss_pred --CCchhhhhHHhhhhc-CceEEEEecce--EEecCCHHHHHHHHHHhhccCC------CCccCCCCC-CCCCCCccCCC
Q 009720 329 --SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESP------AFHFYDPKT-PFYTSPRFLPP 396 (527)
Q Consensus 329 --~~d~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~~------~~~~~~~~~-~i~~~~~~~~p 396 (527)
...+..++++.++++ .++.+|.+++| |.|+|||++|++|++.+..... ...++++.. .+...+.+.++
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 234567999999987 57999999988 9999999999999876654321 112344443 34455555566
Q ss_pred eeeec-eee-eeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhH--HhhhcCCcc--------
Q 009720 397 TKIDN-CRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKV-------- 463 (527)
Q Consensus 397 ~~i~~-~~i-~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~--~~~~~~~~~-------- 463 (527)
+.|.. |.| .+++||++|+|+ ++.|.+|+||++|+|+++|+|.++++..+.+......+ .+.++++.+
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~ 354 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETK 354 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcccc
Confidence 66643 555 468888888888 47788889999999988888887766655332221111 112222200
Q ss_pred ceEeCCCcEE------eeeEEcCCCEECCCcEEeCCCCcCC-CccCCCceEEecCe-----EEEccCCEeCCCccC
Q 009720 464 PIGVGRNTKI------RNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 527 (527)
Q Consensus 464 ~~~Ig~~~~I------~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~-----~vi~~~~~I~~g~vi 527 (527)
++.||+++++ .+|.|++++.||.++++.|.++... ...++++++|..+. +.||++++|++|++|
T Consensus 355 ~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 355 KIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 0233333333 3578888888888888876544332 23445555554443 446888888888764
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=378.03 Aligned_cols=388 Identities=19% Similarity=0.234 Sum_probs=282.7
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
+..+.+||||||+||||+| .+||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++.. + .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-------~ 69 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAE-L-------A 69 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 4567899999999999987 589999999999 99999999999999999999999988777766641 1 0
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
..+.++... ++.||+++++.++.++.+ ...++|++++||+ ++ ..++.++++.|++.++++++++.
T Consensus 70 -~~~~~~~~~---------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 70 -PEVDIAVQD---------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred -CccEEEeCC---------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 012333211 236999999999988852 1246799999998 33 56799999999888888888877
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~- 328 (527)
+.++ +..||.+..|++|+|.+|.|||.....+ .....+++|+|+|++++|..+++...+.
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 7665 5679999888899999999998753210 0124689999999999997777654432
Q ss_pred --CCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHH------HHHHHHhhccC---------CCCccCCCCCCCCCC
Q 009720 329 --SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSF------YEANMALTKES---------PAFHFYDPKTPFYTS 390 (527)
Q Consensus 329 --~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~------~~An~~ll~~~---------~~~~~~~~~~~i~~~ 390 (527)
...+.+|+++.++++ .+|++|.+++||.|+|+++++ ..+|..++... |...++++...+...
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~ 277 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRD 277 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCC
Confidence 234568999999988 589999999999999999888 55555544331 112233333334334
Q ss_pred CccCCCeee------------e-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-H
Q 009720 391 PRFLPPTKI------------D-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-A 455 (527)
Q Consensus 391 ~~~~~p~~i------------~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~ 455 (527)
+.+.|++.| . +|.|.+++|+++|.|+++.+.+++||+++.||+++.|...++++.+ ......++ .
T Consensus 278 ~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~ 357 (482)
T PRK14352 278 VVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKN 357 (482)
T ss_pred cEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcc
Confidence 333333333 2 2555667777777777667778888888888888888755555543 22222222 3
Q ss_pred hhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 456 ~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.+.++ +.|++.+.+.+|+||+++.||.++++.|.+ .++++++++.++.|..| +.||+++.|++|++|
T Consensus 358 ~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 358 ATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred cEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 445555 677777788899999999999999998753 35566666666666666 456999999999864
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=345.06 Aligned_cols=332 Identities=22% Similarity=0.331 Sum_probs=269.4
Q ss_pred ceEEEEEeCC--CCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 94 NVAAIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 94 ~m~aVILAaG--~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
+++||||.|| +||||+||+.+.||||+||+|+ |||+|.|+.|.+. |..+|+++.-|..+.+.+|+.+.- + .|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~--~--e~ 76 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ--Q--EF 76 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH--h--hc
Confidence 4689999999 7999999999999999999999 9999999999885 999999999998888888875321 1 22
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
. ..|.++..+.+ .|||+.|+.+++.+- ....+.|+++++|..++.++.+|++.|+..+..+|++...
T Consensus 77 ~-~pvrYL~E~~p---------lGtaGgLyhFrdqIl---~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 77 K-VPVRYLREDNP---------LGTAGGLYHFRDQIL---AGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTK 143 (407)
T ss_pred c-cchhhhccCCC---------CCcccceeehhhHHh---cCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEE
Confidence 2 12555655543 699999999998874 2457899999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEEC-CCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC--
Q 009720 251 VGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D-~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~-- 327 (527)
+..+.+++||.+..| .+|+|+++.|||...- ++++|+|+|+|++++|+.+ ++.+.
T Consensus 144 vs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i-~~v~~q~ 201 (407)
T KOG1460|consen 144 VSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAI-AEVYRQR 201 (407)
T ss_pred ecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHH-HHHHHHH
Confidence 998889999988887 6899999999998653 5789999999999998643 22111
Q ss_pred ---------------CCCc---hhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCcc-CCCCCCCC
Q 009720 328 ---------------TSND---FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHF-YDPKTPFY 388 (527)
Q Consensus 328 ---------------~~~d---~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~-~~~~~~i~ 388 (527)
...| +.+|+++.++..+++|+|..+++|..|.|+.+-+.||..++++....+- .-++. -.
T Consensus 202 ~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~-pg 280 (407)
T KOG1460|consen 202 QDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKG-PG 280 (407)
T ss_pred HhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCC-CC
Confidence 1123 3468999999999999999999999999999999999999986422110 00010 01
Q ss_pred CCCccCCCeeeeceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeC
Q 009720 389 TSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (527)
Q Consensus 389 ~~~~~~~p~~i~~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig 468 (527)
+.+.+..+++|++ ++.+.+.+.|| .|..||.+++||+|++|.+|+++++ +.|.
T Consensus 281 t~a~IigdVyIhP----sakvhptAkiG----PNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei~ 333 (407)
T KOG1460|consen 281 TQAEIIGDVYIHP----SAKVHPTAKIG----PNVSIGANVRVGPGVRLRESIILDD-------------------AEIE 333 (407)
T ss_pred CCceEEeeeEEcC----cceeCCccccC----CCceecCCceecCCceeeeeeeccC-------------------cEee
Confidence 2233445555554 55666667776 4688999999999999999999998 9999
Q ss_pred CCcEEeeeEEcCCCEECCCcEEeCC
Q 009720 469 RNTKIRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 469 ~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+|+.+-+||||+.+.||+++++...
T Consensus 334 enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 334 ENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred ccceEEeeeecccccccceeeeccc
Confidence 9999999999999999999999864
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=359.38 Aligned_cols=372 Identities=19% Similarity=0.260 Sum_probs=276.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+++|||||||.||||+| .+||||+||+|+ |||+|+++.|..+ +++|+|++++..+++.+|+.+.+ .
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~-~-------- 67 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF-P-------- 67 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC-C--------
Confidence 36799999999999986 799999999999 9999999999987 78999999999999988885321 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.++++...+. .+.||+++++.+. ...++||+++||..+. ..+.++.+.+.++++++.+.++++
T Consensus 68 ~v~~~~~~~~-------~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~ 130 (430)
T PRK14359 68 GVIFHTQDLE-------NYPGTGGALMGIE--------PKHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD 130 (430)
T ss_pred ceEEEEecCc-------cCCCcHHHHhhcc--------cCCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC
Confidence 1555442221 2369999997732 1247899999998442 234556666677888888888765
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---CCC
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSN 330 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~---~~~ 330 (527)
+..|+.+..| +|+|..+.|||..... . ...+..++|+|+|++++|..+++.... ...
T Consensus 131 --~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e 190 (430)
T PRK14359 131 --PKGYGRVVIE-NGQVKKIVEQKDANEE---------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKE 190 (430)
T ss_pred --CccCcEEEEc-CCeEEEEEECCCCCcc---------------c--ccceEEEeEEEEEEHHHHHHHHHhcCcccccCc
Confidence 4568988775 6899999998853210 0 013578999999999999876554322 123
Q ss_pred chhhhhHHhhhhc-CceEEEEec-ceEEecCCHHHHHHHHHHhhccCC-C------------CccCCCCCCCCCCCccCC
Q 009720 331 DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP-A------------FHFYDPKTPFYTSPRFLP 395 (527)
Q Consensus 331 d~~~dii~~li~~-~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~~~~-~------------~~~~~~~~~i~~~~~~~~ 395 (527)
.+.+++++.+++. .++.+|.++ ++|.||+|++||..|+..+..+.. + -.+.+++..+.....+.+
T Consensus 191 ~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~ 270 (430)
T PRK14359 191 YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEE 270 (430)
T ss_pred eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECC
Confidence 4567889888877 789999997 589999999999999866654321 1 012233344444445566
Q ss_pred Ceeee-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhH-HhhhcCCccceEeCCCcEE
Q 009720 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKI 473 (527)
Q Consensus 396 p~~i~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~Ig~~~~I 473 (527)
++.|. ++.|.+++|+++|.|+++.|.+|+||++++|+++|+|+++.+... .++ .+++ ++ +.||++++|
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~------~~i~~~~~-~~---~~i~~~~~i 340 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNF------VETKNAKL-NG---VKAGHLSYL 340 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCc------EEEcccEe-cc---ccccccccc
Confidence 66664 477788999999999988899999999999999999987666544 122 2344 56 799999999
Q ss_pred eeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 474 RNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.+|+||+++.||+++++.|.+ .+++++.++.++.|..| +.||++++|++|++|
T Consensus 341 ~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 400 (430)
T PRK14359 341 GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAP-VNIEDNVLIAAGSTV 400 (430)
T ss_pred cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 999999999999999998764 35556666666666655 456999999999875
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=365.05 Aligned_cols=386 Identities=18% Similarity=0.261 Sum_probs=249.5
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
.+|+|||||||+|+||+| .+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+. + .+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~----~----~~- 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQ----G----SG- 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc----c----CC-
Confidence 468999999999999987 489999999999 9999999999999999999999998887776663 1 11
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
+.++... ++.||+++++.++.+++. ..++|++++||+ +...++.++++.|+++++++|+++.+
T Consensus 73 --i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~ 137 (481)
T PRK14358 73 --VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGE 137 (481)
T ss_pred --cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 4444321 246999999999888752 235799999998 44667999999999999999998888
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC---C
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~---~ 327 (527)
+++ ++.||++.+|++|+|.+|.|||.....+ .....+++|+|+|+++++ ++++... +
T Consensus 138 ~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~~i~~~~~ 197 (481)
T PRK14358 138 LPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELARRIGNDNK 197 (481)
T ss_pred cCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHHhcCCCcc
Confidence 775 4569999999999999999998643210 012468999999997753 2333322 1
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHH-hhccCCC-------CccCCCCCC-CCCCCccCCCe
Q 009720 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMA-LTKESPA-------FHFYDPKTP-FYTSPRFLPPT 397 (527)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~-ll~~~~~-------~~~~~~~~~-i~~~~~~~~p~ 397 (527)
....+.+|+++.++++ .++++|.+.++|..++...+++.+++. ++.+... ....+|... +.....+..++
T Consensus 198 ~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~ 277 (481)
T PRK14358 198 AGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDV 277 (481)
T ss_pred CCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCC
Confidence 2234567999999987 579999999999888888888777765 4332210 011112111 11111222222
Q ss_pred eeec-eeee-eeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhH--HhhhcCCccc--------
Q 009720 398 KIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVP-------- 464 (527)
Q Consensus 398 ~i~~-~~i~-~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~--~~~~~~~~~~-------- 464 (527)
.|.+ |.|. ++.||++|.|+ .|.|.+|+||++|.|+++++|.++++..+.+......+ .+.++++...
T Consensus 278 ~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~ 357 (481)
T PRK14358 278 TIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKN 357 (481)
T ss_pred EEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECC
Confidence 3321 2221 34455555555 25555556666666665555555444333222222211 1222222000
Q ss_pred ------eEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCC-CccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 465 ------IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 465 ------~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.||+.+.+.+|.||+|+.||.+++|.|.++... .+.+++++.|..+ ++|..+++||++++|
T Consensus 358 ~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~-~~i~~~~~Ig~~~~i 426 (481)
T PRK14358 358 ARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSN-TTLIAPRVVGDAAFI 426 (481)
T ss_pred ceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCC-CEEcCCcEECCCCEE
Confidence 3334444445666777777777777776554433 2466666666665 444666667666653
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=366.65 Aligned_cols=382 Identities=17% Similarity=0.238 Sum_probs=259.1
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
.|++|++||||||.||||++ .+||||+|++|+ |||+|+++.+.++|+++|++++++..+++.+|+. .
T Consensus 2 ~~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~-----~---- 68 (456)
T PRK09451 2 LNSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLA-----D---- 68 (456)
T ss_pred CCCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhc-----c----
Confidence 46679999999999999983 699999999999 9999999999999999999999998777766653 1
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~ 248 (527)
..++++.... ..||+++++.++.+++ ..+.||+++||+ +...++.++++.|.+.+ +++++
T Consensus 69 --~~~~~i~~~~---------~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 69 --EPLNWVLQAE---------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred --CCcEEEECCC---------CCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 1134433221 2599999999988874 236899999998 45678999998886544 45666
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+.++ ++.||++.. ++++|.+|.|||..... ...+.++++|+|+|+++.|.++++...+.
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~-----------------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDE-----------------QRQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 66655 467998754 57899999999863211 00135789999999999988777764432
Q ss_pred ---CCchhhhhHHhhhhc-CceEEEE------ecce--EEecCCHHHHHHHHHH--hhcc-----CCCCc----------
Q 009720 329 ---SNDFGSEIIPAAIME-HDVQAYI------FRDY--WEDIGTIKSFYEANMA--LTKE-----SPAFH---------- 379 (527)
Q Consensus 329 ---~~d~~~dii~~li~~-~~V~~~~------~~g~--w~dIgt~~d~~~An~~--ll~~-----~~~~~---------- 379 (527)
...+..|+++.++++ .++.+|. +.|| |.|++++++|+++|+. ++.. .|...
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 335678999999988 6899996 4676 7889999999999852 3221 12110
Q ss_pred --cCCCCCCCCCCCccCCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEe-eeEEeCCcccCchhhH
Q 009720 380 --FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI 454 (527)
Q Consensus 380 --~~~~~~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~-~~~i~~~~~~~~~~~~ 454 (527)
.+.+...+.....+.+++.|. +|.|.+++|+++|+|++ +.+.+|+||++|.|++++.|. ++.+.++.....+.++
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 111222222222333344442 25556677777777763 566666777777777666665 3333322222222222
Q ss_pred -HhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCC-------cCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 455 -ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 455 -~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
.+.+++| +.+++.+.+.+|.||+++.||+++++.+.++ +++++.++.++.|..| +.|+.+++|++|++
T Consensus 351 ~~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~gs~ 426 (456)
T PRK09451 351 KKARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIGAGTT 426 (456)
T ss_pred eceeeCCC---CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCC-cEECCCCEECCCCE
Confidence 2334444 4555555666789999999999999887544 4444444444444444 24588888888876
Q ss_pred C
Q 009720 527 I 527 (527)
Q Consensus 527 i 527 (527)
|
T Consensus 427 v 427 (456)
T PRK09451 427 V 427 (456)
T ss_pred E
Confidence 4
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=362.71 Aligned_cols=379 Identities=20% Similarity=0.259 Sum_probs=255.7
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|++||||||.||||+| .+||||+|++|+ |||+|+++++.++|+++++|++++..+++.+|+. .+ +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~-~~-------~--- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALA-NR-------D--- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhc-CC-------C---
Confidence 7899999999999997 699999999999 9999999999999999999999998888877764 11 1
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+.++...+ +.|++++++.++.++++ .++|++++||+ +...++.++++.|.+. ..++++.+.+
T Consensus 66 i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~ 129 (451)
T TIGR01173 66 VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP 129 (451)
T ss_pred cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC
Confidence 33332221 24999999999988852 36899999998 3356789999988664 4677777665
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---C
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---~ 329 (527)
+ +..|+.+..|++|+|..|.|||...... ...+.+++|+|+|++++|..+++...+. .
T Consensus 130 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~ 190 (451)
T TIGR01173 130 D--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQG 190 (451)
T ss_pred C--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccC
Confidence 3 5569999999889999999997532100 0125789999999999976666654332 2
Q ss_pred CchhhhhHHhhhhc-CceEEEEecce--EEecCCHHHHHHHHHHhhccCCC------Ccc-------CCC------CCCC
Q 009720 330 NDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA------FHF-------YDP------KTPF 387 (527)
Q Consensus 330 ~d~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~~~------~~~-------~~~------~~~i 387 (527)
..+..++++.++++ .++++|.++++ |.+++|++++..++..+..+.+. ..+ ..+ ...|
T Consensus 191 e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i 270 (451)
T TIGR01173 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEI 270 (451)
T ss_pred cEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEE
Confidence 23467899999877 57999999988 99999999999887655432110 001 111 1222
Q ss_pred CCCCccCCCe------eee-ceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-Hhh
Q 009720 388 YTSPRFLPPT------KID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASL 457 (527)
Q Consensus 388 ~~~~~~~~p~------~i~-~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~~~ 457 (527)
...+.+.+++ .|. .+.|.+++|+++|.|+ ++.|.+++||.+|+|+++++|.+..+++++ ......++ .+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 2222222222 221 1444556666666666 356666666666666666666532222221 11111111 133
Q ss_pred hcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCC-------cCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 458 ~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++++ +.|++.+.|.+|.||+++.||+++++.|.++ ++++++++.++.|..| +.||++++|++|++|
T Consensus 351 ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 351 IGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTV 423 (451)
T ss_pred ECCC---cEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEE
Confidence 3444 4455555566788888888999888887443 3444444555545444 456999999999875
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=341.68 Aligned_cols=386 Identities=22% Similarity=0.281 Sum_probs=292.5
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
++.+||||||+||||. +..||-|.|++|+ ||++|+++.+...+.+++.+|+++..+.+...+.+..
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~---------- 67 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD---------- 67 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----------
Confidence 4689999999999998 5699999999999 9999999999999999999999999999987775210
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.++++. |.. .+||++|+.+++++|.+ ....++||++||+ |.. ..+.+|++.|...++.++++....
T Consensus 68 ~v~~v~--Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~ 135 (460)
T COG1207 68 DVEFVL--QEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL 135 (460)
T ss_pred CceEEE--ecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc
Confidence 133322 322 26999999999999942 2345799999998 444 457889999999999999999998
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---C
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~---~ 328 (527)
++ |..||-+..+++|+|+.|.|.....+. ++.-..+++|+|+|+...|.+.|..... +
T Consensus 136 ~d--P~GYGRIvr~~~g~V~~IVE~KDA~~e-----------------ek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaq 196 (460)
T COG1207 136 DD--PTGYGRIVRDGNGEVTAIVEEKDASEE-----------------EKQIKEINTGIYAFDGAALLRALPKLSNNNAQ 196 (460)
T ss_pred CC--CCCcceEEEcCCCcEEEEEEcCCCCHH-----------------HhcCcEEeeeEEEEcHHHHHHHHHHhcccccc
Confidence 88 678999999999999999987654321 1223578999999999988877776543 2
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecce--EEecCCHHHHHHHHHHhhccC------CCCccCCCC-------CCCCCCCc
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-------TPFYTSPR 392 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~~-------~~i~~~~~ 392 (527)
.+.|.+|++..+..+ .+|.++..+++ ...+++-..+-+++..+-++. ....+.||. ..+.....
T Consensus 197 gEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dvv 276 (460)
T COG1207 197 GEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVV 276 (460)
T ss_pred CcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceE
Confidence 456789999888766 78999999877 468889888888887765543 222344443 33333344
Q ss_pred cCCCeee------------ec-eeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCC-cccCchhhH-Hh
Q 009720 393 FLPPTKI------------DN-CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGA-DYYQTESEI-AS 456 (527)
Q Consensus 393 ~~~p~~i------------~~-~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~-~~~~~~~~~-~~ 456 (527)
+.|++.+ .+ |.|+||.|+++|.|.. +.+++|.||++|.||+.++|.....+++ .-..-+.|+ .+
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a 356 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKA 356 (460)
T ss_pred EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecc
Confidence 4443332 11 4456667777777765 6666777777777776666665544444 222223343 46
Q ss_pred hhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCC-ccCCCceEEecCeE-----EEccCCEeCCCccC
Q 009720 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA-DRPELGFYIRSGIT-----IIMEKATIEDGMVI 527 (527)
Q Consensus 457 ~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~i~~g~~-----vi~~~~~I~~g~vi 527 (527)
-+++| +.+++-++|.+|.||.++.||++++..|+|+.... +.+|++++|+|... .||++++|++||+|
T Consensus 357 ~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 357 TIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred cccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 67777 78888899999999999999999999999999874 79999999988864 48999999999986
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=354.74 Aligned_cols=371 Identities=18% Similarity=0.217 Sum_probs=258.6
Q ss_pred CCCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcc
Q 009720 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTN 169 (527)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~ 169 (527)
+.|+++.|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++.+ +
T Consensus 1 ~~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~------ 69 (446)
T PRK14353 1 MTDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I------ 69 (446)
T ss_pred CccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c------
Confidence 357789999999999999984 589999999999 99999999999999999999999988888777642 1
Q ss_pred cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEE
Q 009720 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITIS 247 (527)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~ 247 (527)
.. .+.++... +..|++++++.++.+++. ..++|++++||+ ++ ..++..+++ |.+.+++.++.
T Consensus 70 -~~-~~~~~~~~---------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~ 133 (446)
T PRK14353 70 -AP-DAEIFVQK---------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVL 133 (446)
T ss_pred -CC-CceEEEcC---------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEE
Confidence 10 12222211 125999999999888752 247899999998 44 445778887 44557788888
Q ss_pred EEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 248 ~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
+.+..+ +..||.+.. ++++|..+.|||.....+ ....++++|+|+|+++.|.++++....
T Consensus 134 ~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~ 193 (446)
T PRK14353 134 GFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGN 193 (446)
T ss_pred EEEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcc
Confidence 777654 467988877 578999999998642110 012578999999999887667665432
Q ss_pred C---CCchhhhhHHhhhhc-CceEEEEec-ceEEecCCHHHHHHHHHHhhcc---------C----CCCccCCCCCCCCC
Q 009720 328 T---SNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE---------S----PAFHFYDPKTPFYT 389 (527)
Q Consensus 328 ~---~~d~~~dii~~li~~-~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~~---------~----~~~~~~~~~~~i~~ 389 (527)
. ...+..++++.+++. .+++++.++ ++|.||+||+||..|+..+..+ . +...++.+.+.|.+
T Consensus 194 ~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 273 (446)
T PRK14353 194 DNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGR 273 (446)
T ss_pred cCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECC
Confidence 1 223567888888876 579999987 4699999999999998644322 1 11112233333444
Q ss_pred CCccCCCeeeec-------------eeeeeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhH
Q 009720 390 SPRFLPPTKIDN-------------CRIKDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI 454 (527)
Q Consensus 390 ~~~~~~p~~i~~-------------~~i~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~ 454 (527)
++.+.+++.|.+ +.|.+++||++|.|++ +.|. +|+||++|.|+++|.|.++.+..+
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~--------- 344 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG--------- 344 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---------
Confidence 444444443332 2223455666666653 4443 566666666666666655555544
Q ss_pred HhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCC-------CCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 455 ~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~-------~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.|++++.+.+++||+++.||.++++.+. ..+++++.++.++.|..| +.||++++|++|++|
T Consensus 345 ----------~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 345 ----------AKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred ----------CEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 67777778888899999999999888653 345566667777777666 346999999888864
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=351.19 Aligned_cols=382 Identities=16% Similarity=0.216 Sum_probs=238.1
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
.+.|||||||+||||+ ...||||+|++|+ |||+|++++|...++++|+|++++..+.+.+++. . .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~---~--- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFP-----D---E--- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcc-----c---c---
Confidence 5889999999999997 4699999999999 9999999999999999999999998777655442 1 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.++++.... ..||+++|+.+++++++ ...++|++++||+ ++ ..++..+++.|+ ++++++.+.++
T Consensus 70 ~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~ 135 (456)
T PRK14356 70 DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL 135 (456)
T ss_pred CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc
Confidence 134443222 25999999999988863 2347899999998 34 466899998875 66788888887
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---C
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~---~ 328 (527)
++ +..||.+.. ++|+|..|.|||...... ....+..+++|+|+|++++|..+++...+ .
T Consensus 136 ~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~---------------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~ 197 (456)
T PRK14356 136 PD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL---------------HGPETGEVNAGIYYLRLDAVESLLPRLTNANKS 197 (456)
T ss_pred CC--CCCceEEEE-cCCeEEEEEECCCCChHH---------------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccC
Confidence 76 457998877 578999999998642100 00013578999999999998766654332 2
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecc--eEEecCCHHHHHHHHHHhhccCCCCccCCCCC--------CCCCCCccCCCe
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESPAFHFYDPKT--------PFYTSPRFLPPT 397 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g--~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~--------~i~~~~~~~~p~ 397 (527)
...+.+++++.+++. .++++|.+.+ +|.+|+||+||.+|+..+..+... .++.+.. .+...+.+.+++
T Consensus 198 ~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~-~~~~~~~~i~~~~~~~i~~~~~i~~~~ 276 (456)
T PRK14356 198 GEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVE-KHLESGVLIHAPESVRIGPRATIEPGA 276 (456)
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHH-HHHHcCCEEeCCCcEEECCCcEECCCC
Confidence 334567889888766 5799999876 579999999999998777654211 0111111 111122222222
Q ss_pred eeec-eee-eeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCC-----------------c-ccCchhhH-H
Q 009720 398 KIDN-CRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA-----------------D-YYQTESEI-A 455 (527)
Q Consensus 398 ~i~~-~~i-~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~-----------------~-~~~~~~~~-~ 455 (527)
.|.+ |.| .+++||++|.|+ ++.|.+|+||++|+|+++|.|.++++..+ + ......++ .
T Consensus 277 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~ 356 (456)
T PRK14356 277 EIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKK 356 (456)
T ss_pred EEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeee
Confidence 2211 222 134444444444 24444444444444444444444333333 1 11111111 1
Q ss_pred hhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCC-CccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 456 ~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.+.++ +.|++++++.+|+||+++.||+++.+.+.++... .+++++++++..+ ++|..+++||++++|
T Consensus 357 ~~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~-~~i~~~~~ig~~~~i 425 (456)
T PRK14356 357 AVLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSN-TALVAPVTIGDGALV 425 (456)
T ss_pred eEecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCC-CEEeCCcEECCCCEE
Confidence 222222 3334444444555555555666555555433222 3556666666555 334566667766653
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=349.22 Aligned_cols=382 Identities=22% Similarity=0.295 Sum_probs=266.9
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+++|||||||.|+||++ .+||||+|++|+ |||+|+++++.++|++++++++++..+++.+|+. ..
T Consensus 2 ~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~-----~~------ 66 (458)
T PRK14354 2 NRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLG-----DR------ 66 (458)
T ss_pred CceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc-----CC------
Confidence 46899999999999974 699999999999 9999999999999999999999998888766653 11
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
+.++... +..|++++++.++.++++ ..+.|++++||. +...++.++++.|.+.+++.++++.+.
T Consensus 67 -~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~ 132 (458)
T PRK14354 67 -SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA 132 (458)
T ss_pred -cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc
Confidence 2222211 125999999999988852 236799999997 335678999999988888888888776
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--- 328 (527)
++ +..|+.+..|++++|..+.|||..... ....+.+++|+|+|+++.|...++.....
T Consensus 133 ~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 193 (458)
T PRK14354 133 EN--PTGYGRIIRNENGEVEKIVEQKDATEE-----------------EKQIKEINTGTYCFDNKALFEALKKISNDNAQ 193 (458)
T ss_pred CC--CCCceEEEEcCCCCEEEEEECCCCChH-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhCccccC
Confidence 54 456898888888999999998752110 00235789999999998766666554321
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecce--EEecCCHHHHHHHHHHhhccC------CCCccCCC-------CCCCCCCCc
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP-------KTPFYTSPR 392 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~-------~~~i~~~~~ 392 (527)
...+..++++.+++. .++++|.++++ |.++++++||..|+..+..+. +...++++ ...+...+.
T Consensus 194 ~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~ 273 (458)
T PRK14354 194 GEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTV 273 (458)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCE
Confidence 223457888888876 57999999976 567889999999886543211 12222232 222333333
Q ss_pred cCCC------------eeee-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-Hhh
Q 009720 393 FLPP------------TKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASL 457 (527)
Q Consensus 393 ~~~p------------~~i~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~~~ 457 (527)
+.++ +.|. ++.|.+++|+++|.|+++.+.+|+||++|.|+++|.|....+++.+ ......++ .+.
T Consensus 274 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~ 353 (458)
T PRK14354 274 IEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKST 353 (458)
T ss_pred EeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeE
Confidence 3322 2221 2445567788888887777788888888888888888743333332 12222222 223
Q ss_pred hcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 458 ~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.++ +.|++.+.+.+|+||+|+.||.++.+.|.+ .++++++++.++.|..| +.||++++|++|++|
T Consensus 354 i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v 426 (458)
T PRK14354 354 IGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI 426 (458)
T ss_pred ECCC---CEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence 3333 455555666678888888888888887743 34566666677777666 456999999999875
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=346.34 Aligned_cols=375 Identities=21% Similarity=0.246 Sum_probs=250.2
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|+|||||||.||||++ .+||||+|++|+ |||+|+|+++.+.+ ++|+|++++..+.+.+|+. .+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~-----~~------- 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLP-----EW------- 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcc-----cc-------
Confidence 6899999999999974 699999999999 99999999999975 8999999998777765553 11
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
++++. +. ..+||+++++.++.+++ ..+.|++++||. +...++.++++.|+++++++++++.+.+
T Consensus 64 ~~~~~--~~-------~~~g~~~ai~~a~~~l~-----~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~ 129 (448)
T PRK14357 64 VKIFL--QE-------EQLGTAHAVMCARDFIE-----PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE 129 (448)
T ss_pred cEEEe--cC-------CCCChHHHHHHHHHhcC-----cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC
Confidence 23322 21 12699999999998885 247899999997 5567899999999988999999998877
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---C
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---~ 329 (527)
+ +..||.+.+| ++++ .+.|||..+.. ....+.+++|+|+|++++|.+++++..+. .
T Consensus 130 ~--~~~~g~v~~d-~g~v-~~~e~~~~~~~-----------------~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~ 188 (448)
T PRK14357 130 D--PTGYGRIIRD-GGKY-RIVEDKDAPEE-----------------EKKIKEINTGIYVFSGDFLLEVLPKIKNENAKG 188 (448)
T ss_pred C--CCCcEEEEEc-CCeE-EEEECCCCChH-----------------HhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCC
Confidence 5 5679999887 6788 88887653210 00125789999999999987776654322 1
Q ss_pred CchhhhhHHhhhhcCceEEEEecce--EEecCCHHHHHHHHHHhhcc----C--CCCc-------cCCCCCCCCCCCccC
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE----S--PAFH-------FYDPKTPFYTSPRFL 394 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~----~--~~~~-------~~~~~~~i~~~~~~~ 394 (527)
..+..|+++.+ .++++|.+.+| |.+++++++|..+...+... . +... ++++.+.|...+.+.
T Consensus 189 ~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~ 265 (448)
T PRK14357 189 EYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIY 265 (448)
T ss_pred eEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEc
Confidence 22345777766 35889999998 66778999998876554221 0 1111 233334444444444
Q ss_pred CCeeee-------------ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-Hhhhc
Q 009720 395 PPTKID-------------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASLLA 459 (527)
Q Consensus 395 ~p~~i~-------------~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~~~~~ 459 (527)
|++.|. .+.|.+|+|+++|.|..+.+.+|+||+++.|+++++|+...+++++ ......++ .+.++
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 443332 1334456666666666566667777777777777777543333332 11111111 12233
Q ss_pred CCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCC-CccCCCceEEecCe-----EEEccCCEeCCCccC
Q 009720 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 527 (527)
Q Consensus 460 ~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~-----~vi~~~~~I~~g~vi 527 (527)
++ +.+++.+.+.+++||+|+.||.++++.+..+... .+.++++++|+.+. +.||+++.|++|++|
T Consensus 346 ~~---~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 346 EN---TKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred CC---cCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 33 3344444555678888888888888776543322 24445544444443 346888888888764
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=315.43 Aligned_cols=279 Identities=24% Similarity=0.366 Sum_probs=221.8
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCc-hhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~~~~ 173 (527)
|++||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.||++++. ..+ +..++++..|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~-----~~llGdgs~~g-- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTF-----KELLGDGSDFG-- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhh-----hhhhcCccccC--
Confidence 7899999999999999999999999999999 99999999999999999999999854 333 23357778887
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
+.+-++.|+. +.|.|+|+..+.+++. .++|+++.||.++..++.++++.+.++..+.++++.++++
T Consensus 73 -v~itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d 138 (286)
T COG1209 73 -VDITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD 138 (286)
T ss_pred -cceEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC
Confidence 5666666754 3699999999999986 4899999999998779999999998888899999999998
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC-Cch
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS-NDF 332 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~-~d~ 332 (527)
+++||++++|++|+|+++.|||+.+. |+++-+|+|+|++++|. .++...|+. .++
T Consensus 139 --P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGEl 194 (286)
T COG1209 139 --PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGEL 194 (286)
T ss_pred --cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCce
Confidence 67899999999999999999999764 68999999999999996 667776653 233
Q ss_pred -hhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEEC
Q 009720 333 -GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (527)
Q Consensus 333 -~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~ 410 (527)
.+|+++.++++ ..+.....+|.|.|.||++||++|+..+...... -.....+|..++ -++.|.
T Consensus 195 EITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~~~~----------~G~~~~~~~~~~-----~~~~i~ 259 (286)
T COG1209 195 EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTVSKR----------QGFKIACPEEIA-----WNGWID 259 (286)
T ss_pred EehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHHHhh----------cCCEEeChhHEE-----EecEEe
Confidence 47899999988 4566777788999999999999999988752211 001111222222 244444
Q ss_pred CCCEEc-ceeEeecEEcCCcEECCC
Q 009720 411 HGCFLR-ECTVEHSIVGERSRLDYG 434 (527)
Q Consensus 411 ~g~~I~-~~~i~~svIg~~~~I~~~ 434 (527)
.-++++ ++.+.+|-+|+..+++.+
T Consensus 260 ~~~~~~~~~~l~~~~~G~y~~~~~~ 284 (286)
T COG1209 260 GPGLIGLASQLEKSGYGQYLLELLR 284 (286)
T ss_pred chHhhccccchhhcCcchhhhhhhc
Confidence 444444 244456677776666544
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=339.78 Aligned_cols=380 Identities=19% Similarity=0.253 Sum_probs=264.1
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.+||||||.|+||++ .+||||+|++|+ |||+|+++++.++|+++++|++++..+++.+|+.+ + . .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-------~--~ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAH-L-------P--G 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcc-c-------C--C
Confidence 6799999999999985 689999999999 99999999999999999999999988777766641 1 1 2
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
++++... ++.|++++++.++.++++ ..+++++++||+ +...++.++++.|++.++++++++.+.+
T Consensus 68 i~~v~~~---------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 134 (450)
T PRK14360 68 LEFVEQQ---------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP 134 (450)
T ss_pred eEEEEeC---------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 4554322 135999999999888852 236799999998 4467799999999998888888877766
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---C
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---~ 329 (527)
+ +..||.+.+|++|+|.++.|||..... ...++++++|+|+|+++.|.+++++..+. .
T Consensus 135 ~--~~~~g~~~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~ 195 (450)
T PRK14360 135 N--PKGYGRVFCDGNNLVEQIVEDRDCTPA-----------------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQK 195 (450)
T ss_pred C--CCCccEEEECCCCCEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHhhccccccCC
Confidence 5 456999999999999999999864210 01246899999999999888777665432 2
Q ss_pred CchhhhhHHhhhhcCceEEEEecce--EEecCCHHHHHHHHHHhhccC------CCCccCCC------------------
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP------------------ 383 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~------------------ 383 (527)
..+.+++++.+. ++..|.+.++ |..+++++++..+...+.... +...+.++
T Consensus 196 e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~ 272 (450)
T PRK14360 196 EYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIE 272 (450)
T ss_pred ceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEEC
Confidence 235567776663 3566777776 466999999988876543211 00011111
Q ss_pred -CCCCCCCCccCCCeeee-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEee-eEEeCCcccCchhhH-Hhhhc
Q 009720 384 -KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASLLA 459 (527)
Q Consensus 384 -~~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~-~~i~~~~~~~~~~~~-~~~~~ 459 (527)
.+.+.....+.+++.|. ++.|.+++|+++|.|+.+.+.+|+||++|+|+++|.|.+ +++.++........+ .+.+.
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~ 352 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLG 352 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccC
Confidence 11222223334444442 356677888888888777778888888888888888874 444433212211111 22333
Q ss_pred CCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 460 ~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++ +.|++++.+.+++|++++.||+++.+.+.+ .++++++++.++.|..| +.||++++|++|++|
T Consensus 353 ~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v 423 (450)
T PRK14360 353 EG---SKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI 423 (450)
T ss_pred CC---cEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence 33 444555555567888888888888887633 34455555555555555 445888888888764
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=322.71 Aligned_cols=243 Identities=18% Similarity=0.263 Sum_probs=192.5
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-c------
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F------ 164 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~------ 164 (527)
|.+|+|||||||.||||+|+|+.+||||+||+|+ |+|+|+++++.++|+++|+|+++|..+++.+|+...+ +
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999985322 1
Q ss_pred ----------cCCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec-------
Q 009720 165 ----------GNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (527)
Q Consensus 165 ----------~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~------- 227 (527)
.....++ +++....|. +++|||+||++++++++ .++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 0000111 233222332 35799999999999885 26899999999986
Q ss_pred -CCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEE----CCCCc---eEEEEecCCccccccccccccccCCCcccc
Q 009720 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI----DNMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (527)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~----D~~g~---V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~ 299 (527)
.++.+++++|.++++.+ +++.++.+ .++.||++.+ |++|+ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 58999999998777765 44445432 2678999998 44564 5899999964321
Q ss_pred ccCCceeeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 300 ~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
..+.++++|+|+|++++|. .++...+. .....+++++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1247899999999999987 45554332 22335799999999999999999999999999999999999875
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=326.69 Aligned_cols=382 Identities=18% Similarity=0.325 Sum_probs=287.7
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
..+++||+||.-.-+||+|+|..+|++|+|++|. |||+|+|++|..+|+.+++|+++.+..++++|+.+.-|.....+-
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccce
Confidence 5779999999999999999999999999999999 999999999999999999999999999999999864333322221
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHc-----CCcEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR-----DADITI 246 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~-----~ad~tv 246 (527)
.+++... . ....||++|.... ++...++|++++||++.+++|.+++++|+++ ++.|||
T Consensus 101 --v~ti~s~-~---------~~S~GDamR~id~-----k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 101 --VVTICSG-E---------SRSVGDAMRDIDE-----KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred --EEEEcCC-C---------cCcHHHHHHHHHh-----cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 2233222 1 2478999987642 1234589999999999999999999999643 567888
Q ss_pred EEEEcCCCCCCCceEEEECC-CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhh
Q 009720 247 SCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (527)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~D~-~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~ 325 (527)
+..+.......+-.++.+|. +.|++.+.+-.... ...+.+.+++.-.+ ....+.++.+++|-+++++++. ++...
T Consensus 164 v~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~~--~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~s-LF~dN 239 (673)
T KOG1461|consen 164 VFKESSTRETTEQVVIAVDSRTSRLLHYQKCVREK--HDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLS-LFTDN 239 (673)
T ss_pred EEeccccccCCcceEEEEcCCcceEEeehhhcccc--cccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHH-Hhhhc
Confidence 88776421122334555664 57888887622111 12344555555553 3455778999999999999996 55655
Q ss_pred CC--CCCchhhhhHHhhhhcCceEEEEecc--eEEecCCHHHHHHHHHHhhccC-----CCCccCCCCCCCCCCCcc--C
Q 009720 326 YP--TSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALTKES-----PAFHFYDPKTPFYTSPRF--L 394 (527)
Q Consensus 326 ~~--~~~d~~~dii~~li~~~~V~~~~~~g--~w~dIgt~~d~~~An~~ll~~~-----~~~~~~~~~~~i~~~~~~--~ 394 (527)
++ ...||...+|-.-+-..+|+++..+. |-..+.++.+|...++++++++ |...|.+.++.-+..-.+ .
T Consensus 240 FDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~ 319 (673)
T KOG1461|consen 240 FDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKS 319 (673)
T ss_pred ccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccC
Confidence 54 45678888887777789999999976 8899999999999999999987 233343322211111111 1
Q ss_pred CCeeee-ceee-eeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 395 PPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 395 ~p~~i~-~~~i-~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
+.+.+. .|.+ .++.||.|+.|+ ++.|.||+||.+|+||++|+|+++++|.+ |.||+||
T Consensus 320 ~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc 380 (673)
T KOG1461|consen 320 PDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNC 380 (673)
T ss_pred ccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCc
Confidence 222232 3455 578999999999 58899999999999999999999999998 9999999
Q ss_pred EEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 472 KIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 472 ~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.|++|||+++|.|++++++.. |+.+..| +|+|+|-+++.+++|
T Consensus 381 ~I~~aii~d~v~i~~~~~l~~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 381 RIDHAIICDDVKIGEGAILKP------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred eEeeeEeecCcEeCCCcccCC------------CcEEeee-eEeCCCccccccccc
Confidence 999999999999999999954 3666666 555888888777543
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=311.54 Aligned_cols=241 Identities=34% Similarity=0.591 Sum_probs=192.6
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEE-EEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I-~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
||||||||+||||+|+|..+||||+|++|+||||+|+|++|.++|+++| +|+++++.+++.+|+...+ .++ -.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~-----~~~-~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY-----KFG-VK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG-----GGT-EE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc-----ccc-cc
Confidence 6999999999999999999999999999999999999999999999995 5555577788887775322 232 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
++++..... .||++||++++.++++. ...++|++++||++++.++.++++.|++++++.++.+...+.+
T Consensus 75 i~~i~~~~~---------~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (248)
T PF00483_consen 75 IEYIVQPEP---------LGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE 143 (248)
T ss_dssp EEEEEESSS---------SCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS
T ss_pred ceeeecccc---------cchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhcccccccccccccccc
Confidence 444432222 49999999999999731 0023599999999999999999999999998554444444444
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHH--hhCCCCCch
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDF 332 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~--~~~~~~~d~ 332 (527)
.++.||++.+|++|+|++|.|||..... +.++++|+|+|++++|..+++ .......++
T Consensus 144 ~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~ 203 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDF 203 (248)
T ss_dssp GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHH
T ss_pred ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhH
Confidence 4788999999999999999999986431 468999999999999987655 222345567
Q ss_pred hhhhHHhhhhcC-ceEEEEecc--eEEecCCHHHHHHHHHHhhc
Q 009720 333 GSEIIPAAIMEH-DVQAYIFRD--YWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 333 ~~dii~~li~~~-~V~~~~~~g--~w~dIgt~~d~~~An~~ll~ 373 (527)
..++++.+++++ .+.+|.+++ +|.|||||++|++||+.+++
T Consensus 204 l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 204 LTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 889999999986 566889998 79999999999999999875
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=314.74 Aligned_cols=243 Identities=17% Similarity=0.256 Sum_probs=193.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-cc-----
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~----- 165 (527)
|++|+|||||||.||||+|+|+.+||||+||+|+ |+|+|+++++.++||++|+|++++..+++.+|+...| +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5789999999999999999999999999999999 9999999999999999999999999999999986322 10
Q ss_pred -----------CCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec-------
Q 009720 166 -----------NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (527)
Q Consensus 166 -----------~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~------- 227 (527)
....++ +++....|.. +.||++|++++++++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000111 2333333422 2699999999999884 36799999999986
Q ss_pred -CCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEEC----CCC---ceEEEEecCCccccccccccccccCCCcccc
Q 009720 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (527)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D----~~g---~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~ 299 (527)
.|+.++++.|.+.+++++ ++....+ .++.||++.+| ++| +|+.|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~-~~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEE-EEEECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 589999999988887744 4444432 46789999996 356 78999999964310
Q ss_pred ccCCceeeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 300 ~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
..++++++|+|+|++++|..+ +...+. ...+.+++++.+++++++.+|.++|+|.|||+|++|.+|+.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPEL-ERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHH-HhCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 124689999999999998755 433332 23456799999999999999999999999999999999999984
|
|
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=305.62 Aligned_cols=235 Identities=22% Similarity=0.372 Sum_probs=192.9
Q ss_pred EEEEeCC--CCCccccCccCCCccceeeCCcchhHHHHHHHHHH-cCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 97 AIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 97 aVILAaG--~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.... ..++ .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~----~~~~-~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ----QEFN-V 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc----cccC-c
Confidence 5899999 8999999999999999999999 999999999999 6999999999999999988885211 0112 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.+.++. +.. ..||+++++.++++++. ...++|+|++||++++.|+.+++++|+++++++|+++.+++.
T Consensus 75 ~i~~~~--~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 75 PIRYLQ--EYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred eEEEec--CCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 233332 221 26999999999988852 224789999999999999999999999999999999988765
Q ss_pred CCCCCceEEEEC-CCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC----
Q 009720 254 SRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---- 328 (527)
Q Consensus 254 ~~~~~~g~v~~D-~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---- 328 (527)
+.++.||++.+| ++|+|.+|.|||.... +.++++|+|+|++++|.. +....+.
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~-i~~~~~~~~~e 200 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDT-IKKAFQSRQQE 200 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHH-Hhhhccccccc
Confidence 456789999998 6799999999986432 367999999999999854 4432221
Q ss_pred --------------CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHh
Q 009720 329 --------------SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 329 --------------~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~l 371 (527)
..++..++++.++++.++++|.++|||.||||+++|++||+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 201 AQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 1235579999999999999999999999999999999999753
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=298.28 Aligned_cols=232 Identities=26% Similarity=0.430 Sum_probs=194.6
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|++||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+. .+ . ..++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~-~~-~--~~~~--- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK-EY-E--KKLG--- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh-cc-c--ccCC---
Confidence 6899999999999999999999999999999 9999999999999999999999999999988885 22 1 1122
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
++++...+.. ..||+++++.++.++.. ..++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus 73 ~~i~~~~~~~-------~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (233)
T cd06425 73 IKITFSIETE-------PLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED- 140 (233)
T ss_pred eEEEeccCCC-------CCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC-
Confidence 4444432221 36999999999988852 23679999999999999999999999999999999988765
Q ss_pred CCCCceEEEECC-CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009720 255 RASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (527)
Q Consensus 255 ~~~~~g~v~~D~-~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~ 333 (527)
++.||++.+|+ +++|.++.|||.... +.++++|+|+|++++|..+ .. ...+..
T Consensus 141 -~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~~ 194 (233)
T cd06425 141 -PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSIE 194 (233)
T ss_pred -ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---Ccccch
Confidence 46799999988 799999999987431 3678999999999999654 32 222445
Q ss_pred hhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 334 ~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
.++++.++++.+|.+|.++|+|.||||+++|++|+..++
T Consensus 195 ~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 195 KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 689999999999999999999999999999999998764
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=303.84 Aligned_cols=235 Identities=24% Similarity=0.435 Sum_probs=189.1
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEecc-CchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~-~~~~i~~hl~~~y~~~~~~~ 170 (527)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++.+ ..+.+.+|+ +++..|
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l-----~~g~~~ 74 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLL-----GDGSQW 74 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHH-----cCcccc
Confidence 6789999999999999999999999999999999 999999999999999999987754 455565555 344455
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCHHHHHHHHHHcCCcEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
+. .+++. .|.. +.||++|+..+.+++. .+++++++||+++ +.++.++++.|.+.++++|+++.
T Consensus 75 g~-~i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~ 138 (292)
T PRK15480 75 GL-NLQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAY 138 (292)
T ss_pred Cc-eeEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEE
Confidence 42 23333 3322 3699999999999885 2568889999765 88999999999888889999988
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
++++ +++||++.+|++|+|++|.|||..+. ++++++|+|+|+++++. .++...+..
T Consensus 139 ~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~~ 194 (292)
T PRK15480 139 HVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPSA 194 (292)
T ss_pred EcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCCC
Confidence 8865 57899999999999999999996432 47899999999999886 455443432
Q ss_pred -Cc-hhhhhHHhhhhcCceE-EEEecce-EEecCCHHHHHHHHHHhh
Q 009720 330 -ND-FGSEIIPAAIMEHDVQ-AYIFRDY-WEDIGTIKSFYEANMALT 372 (527)
Q Consensus 330 -~d-~~~dii~~li~~~~V~-~~~~~g~-w~dIgt~~d~~~An~~ll 372 (527)
.+ ..+++++.+++++++. .+..+|+ |.|+||+++|.+|+..+.
T Consensus 195 ~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 195 RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 22 2478999999887664 4566785 999999999999998876
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=303.25 Aligned_cols=348 Identities=18% Similarity=0.305 Sum_probs=244.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccC-chhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~-~~~i~~hl~~~y~~~~~~~ 170 (527)
|.++++|++|||.||||--++...||||+||||+ |||+|+|++|.++|+++|+|++... ...++..|...+ ....+
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~~~- 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLKKR- 83 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccccc-
Confidence 6788999999999999999999999999999999 9999999999999999999999763 334444443222 11111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
...|++-...+.. .||+++|+.....+. .++||+++||.+.+.++..++++++..++...++...
T Consensus 84 -~~~v~ip~~~~~d--------~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~ 148 (433)
T KOG1462|consen 84 -PDYVEIPTDDNSD--------FGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGN 148 (433)
T ss_pred -ccEEEeecccccc--------cCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcc
Confidence 0123433322221 599999999888875 3699999999999999999999999877755544432
Q ss_pred cCC------C---CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHH
Q 009720 251 VGE------S---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (527)
Q Consensus 251 ~~~------~---~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~l 321 (527)
... . ....+.++.+++++.=..|.... .+..+.+.+..++|+-.|+. ...+.+.++.+|+|+.++++.
T Consensus 149 ~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~-~d~~~~l~i~~slL~~~prl-tl~t~L~dahiY~~k~~v~d~- 225 (433)
T KOG1462|consen 149 ALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDS-ADEEEPLVIRKSLLWNHPRL-TLTTKLVDAHIYVFKHWVIDL- 225 (433)
T ss_pred ccccccccCcccccccccceeeeccccceeEEeecC-CcCCCceehhhhhhhcCCce-EEeccccceeeeeeHHHHHHH-
Confidence 211 1 11234455565554333333221 12233456667777777765 346789999999999999974
Q ss_pred HHhhCCCCCchhhhhHHhhhhc---------------------------------CceEEEEec--ceEEecCCHHHHHH
Q 009720 322 LRWRYPTSNDFGSEIIPAAIME---------------------------------HDVQAYIFR--DYWEDIGTIKSFYE 366 (527)
Q Consensus 322 l~~~~~~~~d~~~dii~~li~~---------------------------------~~V~~~~~~--g~w~dIgt~~d~~~ 366 (527)
|.+. ++-.+|-.+++|.++++ -++++|... .-+..++|.-.|++
T Consensus 226 l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~e 304 (433)
T KOG1462|consen 226 LSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYME 304 (433)
T ss_pred HhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHh
Confidence 4422 22234445555555532 234555554 34778999999999
Q ss_pred HH--HHhhccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEe
Q 009720 367 AN--MALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVML 443 (527)
Q Consensus 367 An--~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~ 443 (527)
+| +.+..-.+.-.|.. +....- +.++ .+++|+++|.|+ ++.|..|+||.+|.||++|+|.+|++|
T Consensus 305 iN~~k~~~~l~~e~~~~k-------~~~~~~-~l~g----~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm 372 (433)
T KOG1462|consen 305 INRDKKLKKLCSEAKFVK-------NYVKKV-ALVG----ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILM 372 (433)
T ss_pred hhHHHHHHHhcccccccc-------chhhhe-eccc----hhhccCCCceecccceeeeeeecCCccccCCcEEEeeEee
Confidence 99 44443332222111 000000 1111 478999999999 588999999999999999999999999
Q ss_pred CCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeC
Q 009720 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~ 492 (527)
.+ +.||+++.|.|||||.+|.||.++.+.|
T Consensus 373 ~n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 373 DN-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred cC-------------------cEecCCcceecceecccceecCCCeeee
Confidence 98 9999999999999999999999999987
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=291.24 Aligned_cols=232 Identities=23% Similarity=0.388 Sum_probs=187.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccC-chhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~-~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
|++||||||.||||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++. .+++.+|+. ++..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~-----~~~~~~-- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLG-----DGSDLG-- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHh-----cccccC--
Confidence 6899999999999999999999999999999 9999999999999999999998764 466777764 222333
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+++....+.. ..||+++++.++.+++ .++|++++||+++ +.++.++++.|.+.++++++++.+++
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
T cd02538 73 -IRITYAVQPK-------PGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN 138 (240)
T ss_pred -ceEEEeeCCC-------CCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3333333321 2699999999998885 3689999999865 66799999999988899999988876
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC--CC
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~ 330 (527)
+ ++.||.+.+|++|+|++|.|||.... +..+++|+|+|++++|. +++...+. ..
T Consensus 139 ~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~ 194 (240)
T cd02538 139 D--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGE 194 (240)
T ss_pred c--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCe
Confidence 5 46799999999999999999986432 35789999999999884 56544332 22
Q ss_pred chhhhhHHhhhhcCceEEEEec--ceEEecCCHHHHHHHHHHhh
Q 009720 331 DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~~~~--g~w~dIgt~~d~~~An~~ll 372 (527)
.+.+++++.+++++++.++.++ |+|.||||+++|++||..+.
T Consensus 195 ~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 195 LEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred EEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 2346899999988888787776 99999999999999998653
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=298.10 Aligned_cols=231 Identities=26% Similarity=0.464 Sum_probs=187.6
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEec-cCchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~-~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++ +..+.+.+|+ +++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~l-----g~g~~~g--- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLL-----GDGSQWG--- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHh-----ccccccC---
Confidence 589999999999999999999999999999 99999999999999999998885 4555665555 3444554
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
+++....|.. +.||++|++.+++++. .+++++++||++ ++.++.++++.|.+.++++|+++.++++
T Consensus 72 ~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~ 138 (286)
T TIGR01207 72 VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD 138 (286)
T ss_pred ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC
Confidence 3444444432 3699999999999985 267889999975 5789999999998888899999988876
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-CCc-
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SND- 331 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~-~~d- 331 (527)
+++||++.+|++|+|++|.|||..+. ++++++|+|+|+++++. +++...++ ..+
T Consensus 139 --p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 194 (286)
T TIGR01207 139 --PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGEL 194 (286)
T ss_pred --HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcE
Confidence 56899999999999999999996432 46899999999999875 55554442 222
Q ss_pred hhhhhHHhhhhcCceEEEEe-cce-EEecCCHHHHHHHHHHhh
Q 009720 332 FGSEIIPAAIMEHDVQAYIF-RDY-WEDIGTIKSFYEANMALT 372 (527)
Q Consensus 332 ~~~dii~~li~~~~V~~~~~-~g~-w~dIgt~~d~~~An~~ll 372 (527)
+.+++++.+++++++..+.+ +|+ |.|+||+++|++|+..+.
T Consensus 195 eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 195 EITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred eHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 45799999999877666665 676 999999999999998764
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=294.47 Aligned_cols=244 Identities=22% Similarity=0.306 Sum_probs=190.1
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCC-cccCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG-TNFGD 172 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~-~~~~~ 172 (527)
|++||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+ +... ...+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999985322 1100 00000
Q ss_pred -----------CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC---CHHHHHHHHH
Q 009720 173 -----------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (527)
Q Consensus 173 -----------~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~~h~ 238 (527)
..+++....| .+.+||+++|+.++.+++ .++|++++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQ-------KEPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEc-------CCCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHHHH
Confidence 0122222222 234699999999998885 278999999998864 4999999998
Q ss_pred HcCCcEEEEEEEcCCCCCCCceEEEECC----CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEe
Q 009720 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (527)
Q Consensus 239 ~~~ad~tv~~~~~~~~~~~~~g~v~~D~----~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~ 314 (527)
+.+++ ++++.+++.+.+..||++.+|+ +++|..+.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 87776 4566666654567899999985 3589999999864211 2367899999999
Q ss_pred HHHHHHHHHhhCC-CCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 315 KDVLFKLLRWRYP-TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 315 ~~iL~~ll~~~~~-~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
+++|..+.+.... ....+..++++.++++++|++|.++|||.||||+++|++||+++.
T Consensus 207 ~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9988755331111 122446789999999899999999999999999999999999886
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=290.81 Aligned_cols=233 Identities=18% Similarity=0.295 Sum_probs=189.8
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCcccC--C
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFG--D 172 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~~--~ 172 (527)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.. .+.+.++. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999985311 11111110 0
Q ss_pred C------------eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHc
Q 009720 173 G------------FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (527)
Q Consensus 173 ~------------~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~ 240 (527)
+ .+++.. +. .+.||+++|+++++++. .++|++++||++++.|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~-------~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--TG-------ESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--cC-------CcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 011111 11 13699999999998874 378999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHH
Q 009720 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (527)
Q Consensus 241 ~ad~tv~~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ 320 (527)
++++|+++.+ + +..||.+.+|+ ++|+.|.|||... +.++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999987652 2 46799999985 6999999998532 25789999999999984
Q ss_pred HHHhhCCCCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccC
Q 009720 321 LLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 321 ll~~~~~~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
++++ ...++.+++++.+++++++++|.++|||.||||+++|.+|+..+....
T Consensus 197 ~l~~---~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDG---DATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hccc---cCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 5553 233677899999999999999999999999999999999999987654
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=292.16 Aligned_cols=239 Identities=21% Similarity=0.288 Sum_probs=186.2
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-cc-----CCc
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~-----~~~ 168 (527)
|++||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+ +. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999986332 11 000
Q ss_pred ccC-------CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC---CHHHHHHHHH
Q 009720 169 NFG-------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (527)
Q Consensus 169 ~~~-------~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~~h~ 238 (527)
.+. ...+.+....+ .+..||+++++.+++++. .++|++++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00112212122 234699999999998874 378999999998854 6999999999
Q ss_pred HcCCcEEEEEEEcCCCCCCCceEEEECC----CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEe
Q 009720 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (527)
Q Consensus 239 ~~~ad~tv~~~~~~~~~~~~~g~v~~D~----~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~ 314 (527)
++++++ +++..++.+.+++||++.+|+ +++|+.|.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888886 566666655567899999872 3799999999953211 1357899999999
Q ss_pred HHHHHHHHHhhCCC-CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHH
Q 009720 315 KDVLFKLLRWRYPT-SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (527)
Q Consensus 315 ~~iL~~ll~~~~~~-~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~A 367 (527)
+++|..+.+..... ...+..++++.+++++++++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 99887654322221 223457899999999999999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=293.14 Aligned_cols=245 Identities=22% Similarity=0.316 Sum_probs=194.1
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCC--
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG-- 167 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~-- 167 (527)
+++-|++||||||.||||+|+|..+||||+||+|+ |+|+|+|+++.++|+++|+|++++..+++.+|+...+ ++..
T Consensus 5 ~~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~ 83 (302)
T PRK13389 5 NTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLE 83 (302)
T ss_pred cccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhh
Confidence 35679999999999999999999999999999999 9999999999999999999999999999999985322 2100
Q ss_pred ----cccCC-------CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--------C
Q 009720 168 ----TNFGD-------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------M 228 (527)
Q Consensus 168 ----~~~~~-------~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--------~ 228 (527)
..+.. ....+....|. ...||++|+++++.++. .++|+|++||++++ .
T Consensus 84 ~~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~ 150 (302)
T PRK13389 84 KRVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQD 150 (302)
T ss_pred hhhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccc
Confidence 00000 00122222222 23699999999988874 37899999999874 7
Q ss_pred CHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECC-------CCceEEEEecCCccccccccccccccCCCcccccc
Q 009720 229 DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 301 (527)
Q Consensus 229 dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~-------~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~ 301 (527)
++.++++.|.+++++ ++++.++++ +..||++.+|+ +++|.+|.|||.....
T Consensus 151 dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~------------------- 208 (302)
T PRK13389 151 NLAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA------------------- 208 (302)
T ss_pred cHHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------
Confidence 999999999888876 777777754 56899998863 4589999999974211
Q ss_pred CCceeeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 302 CPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 302 ~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
.+.++++|+|+|++++| .+++...+. ...+.+++++.++++.++++|.++|+|.|||||++|.+|++++.
T Consensus 209 ~s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 209 PSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred CccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 13679999999999998 466654332 23456899999999999999999999999999999999999975
|
|
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=280.39 Aligned_cols=219 Identities=21% Similarity=0.306 Sum_probs=181.8
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeE
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V 175 (527)
+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+... .++ +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~------~~~---~ 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS------RFG---L 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc------cCC---c
Confidence 589999999999999999999999999999 999999999999999999999999999998888631 122 3
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHH--HcCCcEEEEEEEcCC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV--DRDADITISCAAVGE 253 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~--~~~ad~tv~~~~~~~ 253 (527)
.+....+. .+..||+++++.++.++. .++|++++||++++.++.++++.|. +.++++++...+.+.
T Consensus 71 ~i~~~~~~------~~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (221)
T cd06422 71 RITISDEP------DELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG 138 (221)
T ss_pred eEEEecCC------CcccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC
Confidence 33332222 023699999999998885 2789999999999999999999998 456666666655543
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~ 333 (527)
...||.+.+|++|+|..+.|||.. .++++|+|+|++++|..+.+. ....
T Consensus 139 --~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~ 187 (221)
T cd06422 139 --HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSL 187 (221)
T ss_pred --CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccH
Confidence 567999999999999999988742 468999999999998765332 2335
Q ss_pred hhhHHhhhhcCceEEEEecceEEecCCHHHHHHH
Q 009720 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (527)
Q Consensus 334 ~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~A 367 (527)
+++++.+++++++.+|.++|||.||||++||.+|
T Consensus 188 ~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 188 NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 7899999999999999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=280.01 Aligned_cols=242 Identities=17% Similarity=0.265 Sum_probs=190.0
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCccc--CCC
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF--GDG 173 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~--~~~ 173 (527)
|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+ ++....+ ..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 9999999999999999999999999999999986432 1111111 011
Q ss_pred eEEEeccccCC-C--CCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 174 FVEVLAATQTP-G--ESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 174 ~V~vl~~~q~~-~--~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
.+.++...... . ...+.-..||+++++++++++. ..++|++++||++++.++.++++.|.+.++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 12222210000 0 0000002579999999998874 12789999999999999999999999999999987753
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
..+.||.+.+|++|+|..+.|||... +..+++|+|+|++++|.. ++.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~-l~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDY-IDGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHh-hccc---cc
Confidence 24679999999999999999998642 146899999999999854 3332 34
Q ss_pred chhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhcc
Q 009720 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~ 374 (527)
++..++++.+++++++++|.++|+|.||+|+++|.+|+..+...
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 66779999999999999999999999999999999999877543
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=275.57 Aligned_cols=232 Identities=26% Similarity=0.403 Sum_probs=190.2
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+. ..|+ ..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-----~~~~-~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-----SRFG-VR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-----hhcC-Ce
Confidence 7899999999999999999999999999999 999999999999999999999999888888877521 1222 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
+.++. +. +..||+++++.++.++. .++|++++||++++.++.++++.|.+.++++++.+.+.++
T Consensus 74 i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (236)
T cd04189 74 ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED- 137 (236)
T ss_pred EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC-
Confidence 33332 21 23699999999998774 3689999999999999999999999999999999888765
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~ 332 (527)
+..||++.+|+ ++|..+.|||.... +.++++|+|+|++++|..+ +...+. ...+
T Consensus 138 -~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~ 193 (236)
T cd04189 138 -PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELE 193 (236)
T ss_pred -cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEE
Confidence 45689888875 59999999986431 3578999999999998644 433222 2234
Q ss_pred hhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 333 ~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
..++++.++++ .+|.+|.++++|.||||++||.+||+.+++
T Consensus 194 ~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 194 ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 56889998876 579999999999999999999999999875
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=266.92 Aligned_cols=223 Identities=25% Similarity=0.424 Sum_probs=184.7
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .++. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-----~~~~-~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-----RGGI-RIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-----ccCc-eEE
Confidence 69999999999999999999999999999 9999999999999999999999998888888875322 1221 122
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
+... +. ..|++++++.++.++. .++|++++||+++..++.++++.|++.+.++++.+.+.++ .
T Consensus 74 ~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 136 (223)
T cd06915 74 YVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--A 136 (223)
T ss_pred EEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--C
Confidence 2221 11 2599999999988773 3789999999999999999999998888889988887654 4
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~~di 336 (527)
..|+.+.+|++|+|..+.|||... .++++++|+|+|++++|..+... ..++.+++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~ 191 (223)
T cd06915 137 SRYGNVTVDGDGRVIAFVEKGPGA---------------------APGLINGGVYLLRKEILAEIPAD----AFSLEADV 191 (223)
T ss_pred CcceeEEECCCCeEEEEEeCCCCC---------------------CCCcEEEEEEEECHHHHhhCCcc----CCChHHHH
Confidence 578999999889999999997643 13678999999999998754221 23456789
Q ss_pred HHhhhhcCceEEEEecceEEecCCHHHHHHHH
Q 009720 337 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (527)
Q Consensus 337 i~~li~~~~V~~~~~~g~w~dIgt~~d~~~An 368 (527)
++.+++++++.+|.++++|.||||++||.+|+
T Consensus 192 ~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 99999888999999999999999999999883
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=262.93 Aligned_cols=217 Identities=30% Similarity=0.524 Sum_probs=181.5
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+ .++ ..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~-~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-----KFG-VNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-----hcC-ceEE
Confidence 69999999999999999999999999999 9999999999999999999999998888888875221 122 1233
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++.... ..|++++++.++.++. .++|++++||++++.++.++++.|.++++++++++.+.+ .+
T Consensus 74 ~~~~~~---------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 136 (217)
T cd04181 74 YVVQEE---------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DP 136 (217)
T ss_pred EEeCCC---------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CC
Confidence 333211 2599999999988772 479999999999999999999999999999999988776 36
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~~di 336 (527)
.+|+.+.+|++|+|.++.|||.... +..+++|+|+|++++|. +++.......++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 194 (217)
T cd04181 137 SRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDA 194 (217)
T ss_pred CcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHH
Confidence 6899999998899999999987532 25789999999999884 5555433345677899
Q ss_pred HHhhhhcCceEEEEecceEEecC
Q 009720 337 IPAAIMEHDVQAYIFRDYWEDIG 359 (527)
Q Consensus 337 i~~li~~~~V~~~~~~g~w~dIg 359 (527)
++.++++.++++|.++|+|.|||
T Consensus 195 ~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 195 IPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHhcCCEEEEEcCCEEecCC
Confidence 99999999999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=260.58 Aligned_cols=219 Identities=25% Similarity=0.459 Sum_probs=176.8
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
+||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+ +..++. .+.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~-----~~~~~~-~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGD-----GSKFGV-NIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCC-----ccccCc-cEE
Confidence 68999999999999999999999999999 99999999999999999999999988888777742 112321 133
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++. +. .+.||+++++.+.... .++|++++||++++.++.++++.|++.++++++.+.+... .
T Consensus 74 ~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 135 (220)
T cd06426 74 YVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--Q 135 (220)
T ss_pred EEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 322 21 1259999997665433 4789999999999999999999999988999988877543 3
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~~di 336 (527)
..||++..|+ ++|+++.|||... .++++|+|+|+++++..+ +. .......++
T Consensus 136 ~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~ 187 (220)
T cd06426 136 VPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPDL 187 (220)
T ss_pred CcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHHH
Confidence 5699999986 8999999997632 468999999999998643 21 111225688
Q ss_pred HHhhhhc-CceEEEEecceEEecCCHHHHHHHH
Q 009720 337 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (527)
Q Consensus 337 i~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An 368 (527)
++.++++ .++.+|.++++|.||||++||.+||
T Consensus 188 ~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 188 IEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 9998877 5799999999999999999999986
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=263.78 Aligned_cols=250 Identities=22% Similarity=0.308 Sum_probs=208.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~ 170 (527)
++..+|||+|||.||||.|.|+..||-|+||.+| |+|+|+++.+..+||++|++||+.+...+.+|+...| +++...-
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4567999999999999999999999999999999 9999999999999999999999999999999987665 3321000
Q ss_pred -C-----------CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC---CHHHHHH
Q 009720 171 -G-----------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQ 235 (527)
Q Consensus 171 -~-----------~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~ 235 (527)
+ ...+++.+..|.. ++|.+||+++|+.++. +++|.|+.+|.++.. .+.+|++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHHH
Confidence 0 1234555556643 4799999999999996 489999999999864 3799999
Q ss_pred HHHHcCCcEEEEEEEcCCCCCCCceEEE----ECCC-CceEEEEecCCccccccccccccccCCCccccccCCceeeeeE
Q 009720 236 SHVDRDADITISCAAVGESRASDYGLVK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (527)
Q Consensus 236 ~h~~~~ad~tv~~~~~~~~~~~~~g~v~----~D~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GI 310 (527)
.+.+.+. -++.+.+++.++.++||++. .+++ .+|+.+.|||...+. .|+++.+|-
T Consensus 148 ~ye~~g~-svi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GR 207 (291)
T COG1210 148 LYEETGG-SVIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGR 207 (291)
T ss_pred HHHHhCC-cEEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeee
Confidence 9988887 46788888877789999998 4443 589999999976532 478999999
Q ss_pred EEEeHHHHHHHHHhhCCCCCc--hhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCC
Q 009720 311 YVFKKDVLFKLLRWRYPTSND--FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (527)
Q Consensus 311 Yif~~~iL~~ll~~~~~~~~d--~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~ 376 (527)
|+|++++|. +|++..+.... ..+|.|..++++..|++|.++|..+|+|++..|.+|+.++..+.+
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~~ 274 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRP 274 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhCh
Confidence 999999997 67776664332 457899999999999999999999999999999999999987653
|
|
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=249.05 Aligned_cols=222 Identities=17% Similarity=0.243 Sum_probs=172.8
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+ + .+ +.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~-~------~~---~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK-Y------PN---IK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc-c------CC---eE
Confidence 69999999999999999999999999999 99999999999999999999999998888888742 1 12 55
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++++++.+..+...
T Consensus 70 ~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (229)
T cd02523 70 FVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWE 132 (229)
T ss_pred EEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCccccc
Confidence 55433211 2599999999988773 68999999999865 5677788888899998887544334
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHh---hCC--CCCc
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSND 331 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~---~~~--~~~d 331 (527)
..++.+..| .+++..+.|||.... ....+++|+|+|++++|..+.+. ..+ ...+
T Consensus 133 ~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~ 191 (229)
T cd02523 133 DEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNL 191 (229)
T ss_pred ccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccc
Confidence 456655444 378999999886432 13578999999999997655332 211 2345
Q ss_pred hhhhhHHhhhhc--CceEEEEecceEEecCCHHHHHHHH
Q 009720 332 FGSEIIPAAIME--HDVQAYIFRDYWEDIGTIKSFYEAN 368 (527)
Q Consensus 332 ~~~dii~~li~~--~~V~~~~~~g~w~dIgt~~d~~~An 368 (527)
+..++++.++++ .+++.+.. ++|.||||++||.+|+
T Consensus 192 ~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 192 YYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred cHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 678999999884 45555555 8999999999999874
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=242.00 Aligned_cols=198 Identities=47% Similarity=0.782 Sum_probs=160.6
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCcccCCCeE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFV 175 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~~~~~V 175 (527)
|||||||.||||+|+|+.+||||+||+|+||||+|+++++.++|+++|+|++++..+++.+|+.+.. ++. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 5999999999999999999999999999878999999999999999999999999999988885321 211 1111225
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR 255 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~ 255 (527)
+++...+.. .+.|..||+++|+.++.++++ ...++|++++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 565543311 124568999999999998852 12478999999999999999999999998888887764
Q ss_pred CCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC-CCCchhh
Q 009720 256 ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGS 334 (527)
Q Consensus 256 ~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~-~~~d~~~ 334 (527)
+++|+|+|++++|..+++...+ ...++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 2689999999999777765432 3446778
Q ss_pred hhHHhhhhcCceEEEEecceEEec
Q 009720 335 EIIPAAIMEHDVQAYIFRDYWEDI 358 (527)
Q Consensus 335 dii~~li~~~~V~~~~~~g~w~dI 358 (527)
|+++.++++.++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=245.71 Aligned_cols=222 Identities=18% Similarity=0.247 Sum_probs=169.0
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
.||||||+||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++.. ....|+.+.+-... . .+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~~---~--~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLLA---P--NAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHhC---C--CCE
Confidence 48999999999999999999999999999 99999999999999999999997432 12233322211110 1 133
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++..... ..||+++++.++.++. ..++|++++||++++.++.++++.|.+.+.+.++++.+.+ .
T Consensus 74 i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 137 (231)
T cd04183 74 VVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---H 137 (231)
T ss_pred EEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---C
Confidence 3221111 2599999999998774 2378999999999999999999999887777777766552 3
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHH-HHHHHHHhhC-----CCCC
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY-----PTSN 330 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~-iL~~ll~~~~-----~~~~ 330 (527)
.+|+.+.+|++|+|+.+.||+.. +..+++|+|+|+++ .|.++++... +...
T Consensus 138 ~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (231)
T cd04183 138 PRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGE 194 (231)
T ss_pred CCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCc
Confidence 47999999999999999988532 24689999999997 6655555421 1122
Q ss_pred chhhhhHHhhhhc-CceEEEEe-cceEEecCCHHHH
Q 009720 331 DFGSEIIPAAIME-HDVQAYIF-RDYWEDIGTIKSF 364 (527)
Q Consensus 331 d~~~dii~~li~~-~~V~~~~~-~g~w~dIgt~~d~ 364 (527)
.+..++++.++++ .+|++|.+ .++|.||||++||
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 3457899999977 57999999 6899999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=247.65 Aligned_cols=204 Identities=17% Similarity=0.285 Sum_probs=155.8
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~~~~ 173 (527)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ ++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 4799999999999999999999999999999 9999999999999999999999999999999996433 221 11011
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHH-----cCCcEEE
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 246 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~-----~~ad~tv 246 (527)
.++++...+ ..|++++++... .++ .++|++++||++++.|+.++++.|++ +++++|+
T Consensus 78 ~i~~~~~~~---------~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIMSED---------CRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEeCCC---------cCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 244433221 258899987642 222 36899999999999999999999987 4889999
Q ss_pred EEEEcCCCCC----CCceEEEECCC-CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHH
Q 009720 247 SCAAVGESRA----SDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (527)
Q Consensus 247 ~~~~~~~~~~----~~~g~v~~D~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL 318 (527)
++.++++++. .+++++.+|++ ++|+.|.|||..+......++..++.-.|.. ..++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 9988876542 24678888866 8999999999876533333443333333322 2357899999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=237.23 Aligned_cols=233 Identities=18% Similarity=0.288 Sum_probs=167.6
Q ss_pred eEEEEEeCCCCCccccCcc-CCCccceeeCC-cchhHHHHHHHHHHc-CCCEEEEEeccCchh-HHHHHHHhhccCCccc
Q 009720 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNF 170 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~-~~PKpLlpIgG-k~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~-i~~hl~~~y~~~~~~~ 170 (527)
|++||||||.||||+|||. .+||+|+|++| + |||+++++++.+. ++++|+|++++...+ +.+++. ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~-~~------- 71 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLP-EG------- 71 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHh-hc-------
Confidence 6899999999999999996 79999999999 6 9999999999998 599999999975543 333332 10
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--CCHHHHHHHHHH---cCCcEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADIT 245 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~---~~ad~t 245 (527)
...+.++.... .+||++++..+..++.. ....+.++|++||+++. .+|.++++.|.+ .++.+|
T Consensus 72 -~~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt 139 (274)
T cd02509 72 -LPEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVT 139 (274)
T ss_pred -CCCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEE
Confidence 01244554322 25999999999888752 12346899999999886 557777776543 567788
Q ss_pred EEEEEcCCCCCCCceEEEECCCC-----ceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHH
Q 009720 246 ISCAAVGESRASDYGLVKIDNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (527)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~D~~g-----~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ 320 (527)
+.+.+.+. .+.||+++.|++. +|.+|.|||.....+.+ .....+++|+|+|+|+++.|.+
T Consensus 140 ~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~ 204 (274)
T cd02509 140 FGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLE 204 (274)
T ss_pred EEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHH
Confidence 88777643 4689999998663 89999999976432211 0113468999999999998887
Q ss_pred HHHhhCCCCC----------------chhhhhHHh--------h-hhc-CceEEEEecceEEecCCHHH
Q 009720 321 LLRWRYPTSN----------------DFGSEIIPA--------A-IME-HDVQAYIFRDYWEDIGTIKS 363 (527)
Q Consensus 321 ll~~~~~~~~----------------d~~~dii~~--------l-i~~-~~V~~~~~~g~w~dIgt~~d 363 (527)
.+++..|... .+..+.++. + +++ .++.+++.+..|.|+|++.+
T Consensus 205 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 205 ELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 7776554210 111222332 1 222 67888888888999999875
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=221.78 Aligned_cols=221 Identities=22% Similarity=0.335 Sum_probs=173.0
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.|+||+| .+||+|+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+++.+ ++ ++
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~---~~ 65 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PN---VE 65 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CC---cE
Confidence 69999999999986 689999999999 99999999999999999999999987777666631 12 44
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l--~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
++.... ..|++++++.++++++. ..+.|+++.||+. ...++.++++.|.+.++++++.+.+..+
T Consensus 66 ~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~- 131 (229)
T cd02540 66 FVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED- 131 (229)
T ss_pred EEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC-
Confidence 443221 25999999999988852 2478999999983 3567899999998878888888777664
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---CCc
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SND 331 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---~~d 331 (527)
+..|+.+..|++|+|..+.|||..... . ...+.+++|+|+|+++.|..+++..... ...
T Consensus 132 -p~~~~~~~~~~~~~v~~~~ek~~~~~~---------------~--~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~ 193 (229)
T cd02540 132 -PTGYGRIIRDGNGKVLRIVEEKDATEE---------------E--KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEY 193 (229)
T ss_pred -CCCccEEEEcCCCCEEEEEECCCCChH---------------H--HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcE
Confidence 567998888888999999998753210 0 0125789999999998877777664332 345
Q ss_pred hhhhhHHhhhhc-CceEEEEecce--EEecCCHHHH
Q 009720 332 FGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSF 364 (527)
Q Consensus 332 ~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~ 364 (527)
+.+++++.++++ .+|++|.++|| |+.|+|+.++
T Consensus 194 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 194 YLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 678999999976 67999999977 6788888764
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=222.21 Aligned_cols=204 Identities=19% Similarity=0.310 Sum_probs=157.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
++|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.++... ... ..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~-~~~-~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSL-SSK-MI 77 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccc-cCC-ce
Confidence 5899999999999999999999999999999 99999999999999999999999999999999875542100 111 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHH--HHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~--h~~~~ad~tv~~~~~~ 252 (527)
+.++...+. ...||+++++++++++. ++|++++||++++.++.+++++ +...++++++.+....
T Consensus 78 v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~ 143 (216)
T cd02507 78 VDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLAS 143 (216)
T ss_pred EEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEecc
Confidence 444433332 23699999999987774 6899999999999999999976 5556777777766544
Q ss_pred CCC-------CCCceEEEECCC---CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHH
Q 009720 253 ESR-------ASDYGLVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (527)
Q Consensus 253 ~~~-------~~~~g~v~~D~~---g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL 318 (527)
... +.+++++.+|++ .+++.+.|+|.... .+.+...++.-.|. ...++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 144 PPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 322 457899999988 58888888886543 22345555665553 34577899999999998864
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-24 Score=228.30 Aligned_cols=239 Identities=17% Similarity=0.293 Sum_probs=164.4
Q ss_pred eEEEEEeCCCCCccccCccC-CCccceeeCC-cchhHHHHHHHHHHcCCCEEEEEeccCchh-HHHHHHHhhccCCcccC
Q 009720 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PKpLlpIgG-k~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~-i~~hl~~~y~~~~~~~~ 171 (527)
|.+||||||.||||+|||.. +||+|+|+.| + |||+|+++.+...++++++|+++..... +.+.+ +.+ +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l-~~~-------~ 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQL-REI-------G 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHH-HHc-------C
Confidence 57999999999999999997 9999999977 7 9999999999999999999999754332 22233 221 1
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC--CHHHHHHHH---HHcCCcEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFIQSH---VDRDADITI 246 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~--dl~~ll~~h---~~~~ad~tv 246 (527)
.....++.... .+|||+++..+..++.... ...+.++|++||+++.. +|.++++++ .+.++.+|+
T Consensus 72 ~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtl 141 (468)
T TIGR01479 72 KLASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTF 141 (468)
T ss_pred CCcceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11123433222 2599999988776663200 12345999999988753 488888865 344555566
Q ss_pred EEEEcCCCCCCCceEEEECC------CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHH
Q 009720 247 SCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (527)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~D~------~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ 320 (527)
...+... .+.||++..|+ .++|.+|.|||.....+.. .....+++|+|+|+|+++.|..
T Consensus 142 gi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~ 206 (468)
T TIGR01479 142 GIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLA 206 (468)
T ss_pred EecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHH
Confidence 5554433 46899999973 2689999999975432111 1112478999999999887776
Q ss_pred HHHhhCCCC-----------------CchhhhhHH---------hhhhc-CceEEEEecceEEecCCHHHHHHH
Q 009720 321 LLRWRYPTS-----------------NDFGSEIIP---------AAIME-HDVQAYIFRDYWEDIGTIKSFYEA 367 (527)
Q Consensus 321 ll~~~~~~~-----------------~d~~~dii~---------~li~~-~~V~~~~~~g~w~dIgt~~d~~~A 367 (527)
.+++..|.- ..+..++++ .++++ .++.+.+.+..|.|+|+++++.+.
T Consensus 207 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 207 ELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEI 280 (468)
T ss_pred HHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHh
Confidence 666544320 011123444 22333 578888888889999999999986
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=210.19 Aligned_cols=201 Identities=21% Similarity=0.308 Sum_probs=147.8
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCc-hhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~~~~ 173 (527)
|+|||||||.|+||+|+|...||||+|++|+ |||+|++++|.++|+++|+|++++.. +.+.+++.+..+... ...
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~---~~~ 76 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLK---QKL 76 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccC---cce
Confidence 5899999999999999999999999999999 99999999999999999999999755 346555532111111 011
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.+.+.... ...||+++|+.+...+. ++|++++||++++.++.++++.|++.++++|+++.+...
T Consensus 77 ~~~~~~~~---------~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~ 140 (214)
T cd04198 77 DEVTIVLD---------EDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPV 140 (214)
T ss_pred eEEEecCC---------CCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCC
Confidence 12222111 13699999999987663 689999999999999999999999999999999887542
Q ss_pred C----------C-CCCceEEEECCC-CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHH
Q 009720 254 S----------R-ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (527)
Q Consensus 254 ~----------~-~~~~g~v~~D~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL 318 (527)
+ + ...+.++.+|++ +++..+...... .+...++..++.-.|+ ...+.++.++++|+|++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~--~~~~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 141 SSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDL--DEDLELRKSLLKRHPR-VTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHh--hhhhhHHHHHHHhCCC-EEEEcCcccceEEEEEeeeC
Confidence 1 1 234677777754 678877653221 1223345555555553 34467899999999998764
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=201.54 Aligned_cols=234 Identities=17% Similarity=0.198 Sum_probs=160.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
++.+||||||.|+||. +|+|+|++|+ |||+|+++.+.++|+++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVE-A-------FG-- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHH-H-------cC--
Confidence 3679999999999993 6999999999 999999999999999999998864 55655553 1 22
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
+.++...+. ++.|+++... +...++ ....+.+++++||+ +. ...+.++++.|.+.++++++++.+.
T Consensus 63 -~~v~~~~~~-------~~~gt~~~~~-~~~~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 63 -GEVVMTSPD-------HPSGTDRIAE-AAAKLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred -CEEEECCCc-------CCCchHHHHH-HHHhcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 233332221 2347766443 332331 11246799999999 55 4568999999887777777777766
Q ss_pred CC----CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 252 ~~----~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
.+ ..++.++++ +|++|+|+.|.|||....... .+.. ...+.+.++|+|+|++++|..+.+. .+
T Consensus 131 ~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~ 197 (245)
T PRK05450 131 HDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PP 197 (245)
T ss_pred CCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CC
Confidence 32 234567765 889999999999985331100 0000 0125789999999999999866542 22
Q ss_pred CCCchh--hhhHHhhhhcCceEEEEecc-eEEecCCHHHHHHHHHHh
Q 009720 328 TSNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 328 ~~~d~~--~dii~~li~~~~V~~~~~~g-~w~dIgt~~d~~~An~~l 371 (527)
...+.. .++++.+-++.+|+++.+++ +|.|||||+||.+|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 198 SPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 211111 12233333447899999996 899999999999999765
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=199.51 Aligned_cols=226 Identities=17% Similarity=0.264 Sum_probs=157.5
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+.+||||||.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVE-S-------FG-- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHH-H-------cC--
Confidence 679999999999994 6999999999 9999999999998 99999999864 55655553 1 12
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHc-CCcEEEEEEE
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~-~ad~tv~~~~ 250 (527)
++++...+. +..||++ +..++..+. ...+.||+++||+ ++ ..++..+++.|.+. +.++++++.+
T Consensus 63 -~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 63 -GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred -CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 334332221 1247875 555554443 1236799999997 44 56789999988776 7888888888
Q ss_pred cCCCC----CCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC
Q 009720 251 VGESR----ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (527)
Q Consensus 251 ~~~~~----~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~ 326 (527)
++++. ...|+ |..|++|+|+.|.+||...... |.. ..+.++++|+|+|++++|..+.+. .
T Consensus 130 ~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~-~ 193 (239)
T cd02517 130 ISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAAL-P 193 (239)
T ss_pred cCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhC-C
Confidence 75422 23344 5577789999999876432100 000 013689999999999999866543 1
Q ss_pred CCCCchhhhhHH--hhhhc-CceEEEEecceEEecCCHHHHHHHHH
Q 009720 327 PTSNDFGSEIIP--AAIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (527)
Q Consensus 327 ~~~~d~~~dii~--~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~ 369 (527)
....+ ..+.++ .++++ .+++++.++++|.|||||+||.+|+.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 123333 34544 56999999999999999999999974
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=192.99 Aligned_cols=223 Identities=15% Similarity=0.234 Sum_probs=149.5
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEe-ccCchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~-~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
|..|+|||||||.|+||+| ..||||+.++|+ +||+|+|++|.+.|++++++|+ +|..+-+..++. .| .|
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~-----~~ 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KY-----PF 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cC-----Cc
Confidence 5679999999999999999 899999999999 9999999999999999999999 887777766663 33 12
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHHHHcCCcEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISCA 249 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~~~ad~tv~~~ 249 (527)
..+++...... ..+|+.+|..+++++. +.|++++||++|...+ +.+++ .... ++.+.
T Consensus 71 ---~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l~~----a~~~-~li~d 128 (239)
T COG1213 71 ---NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERLLE----APGE-GLIVD 128 (239)
T ss_pred ---ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHHHh----CcCC-cEEEe
Confidence 24554433221 1367899999998886 6799999999998764 44443 2222 33333
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
..+-.....-.....+++|++..+..+-+.. ...++|++.|+.++|..+.+-.....
T Consensus 129 ~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~~~~e~~ 185 (239)
T COG1213 129 RRPRYVGVEEATKVKDEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYELLVERS 185 (239)
T ss_pred ccccccccCceeEEEecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHHHHhhhh
Confidence 2211111111223344789999887665422 45789999999998765443322211
Q ss_pred CchhhhhHHhhhhcCceEEEEe-----cceEEecCCHHHHHHHHHHhhc
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIF-----RDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~-----~g~w~dIgt~~d~~~An~~ll~ 373 (527)
.+ .+....+...+.+-.. ..+|.||+||+|+.+|...+..
T Consensus 186 -~~---~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 186 -EY---DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred -hH---HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 11 1222222222222222 2469999999999999988764
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=187.09 Aligned_cols=225 Identities=17% Similarity=0.297 Sum_probs=153.1
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
++.+||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++. .+ +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~-~~-------~- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE-AF-------G- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH-Hc-------C-
Confidence 3689999999999994 5999999999 9999999999998 89999999964 55666653 22 2
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCC-cEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCA 249 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~a-d~tv~~~ 249 (527)
++++...+. +..|++ .+..+...++ .+.|+++.||+ +...++.++++.|.+.+. ++++++.
T Consensus 64 --~~v~~~~~~-------~~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (238)
T PRK13368 64 --GKVVMTSDD-------HLSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCA 127 (238)
T ss_pred --CeEEecCcc-------CCCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEE
Confidence 223222221 124666 4555544432 47899999997 446779999998876543 5566666
Q ss_pred EcCC-CC---CCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhh
Q 009720 250 AVGE-SR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (527)
Q Consensus 250 ~~~~-~~---~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~ 325 (527)
+++. .+ +..+++ .++++|+++.+.|+|..... +. ...+++.++|+|+|++++|..+ +..
T Consensus 128 ~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~-~~~~~~~n~giy~~~~~~l~~~-~~~ 190 (238)
T PRK13368 128 PISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DG-ESARYLKHVGIYAFRRDVLQQF-SQL 190 (238)
T ss_pred EcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CC-CCCceeEEEEEEEeCHHHHHHH-HcC
Confidence 5543 11 334544 44667999999976532110 00 0013578999999999999753 322
Q ss_pred CCCC-Cchhh-hhHHhhh-hcCceEEEEecceEEecCCHHHHHHHHHH
Q 009720 326 YPTS-NDFGS-EIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (527)
Q Consensus 326 ~~~~-~d~~~-dii~~li-~~~~V~~~~~~g~w~dIgt~~d~~~An~~ 370 (527)
.+.. ..+.. +++ .++ ...++++|..+++|.||||++||..|+..
T Consensus 191 ~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 191 PETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1111 11222 555 454 44679999989999999999999999763
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=193.09 Aligned_cols=241 Identities=17% Similarity=0.288 Sum_probs=158.3
Q ss_pred eEEEEEeCCCCCccccCccC-CCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhH-HHHHHHhhccCCcccCC
Q 009720 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASL-NRHIARTYFGNGTNFGD 172 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i-~~hl~~~y~~~~~~~~~ 172 (527)
|.+||||||.||||+|+|.. .||||+|++|..|||+++++.+...++.+.+|+|+.....+ .+.+. . ++.
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~-------~~~ 77 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-Q-------LNK 77 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-h-------cCC
Confidence 79999999999999999998 79999999653399999999999888888888887654333 22221 1 110
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC--HHHHHHHHH---HcCCcEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHV---DRDADITIS 247 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d--l~~ll~~h~---~~~ad~tv~ 247 (527)
....++..... ++||.|+..+..++.........-++++++||+.... |.+.+++.. +.+.-+|+.
T Consensus 78 ~~~~ii~EP~~---------rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~G 148 (478)
T PRK15460 78 LTENIILEPAG---------RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFG 148 (478)
T ss_pred ccccEEecCCC---------CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 00134433222 5899998877666642100113568899999988532 555555432 234434444
Q ss_pred EEEcCCCCCCCceEEEECCC---------CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHH
Q 009720 248 CAAVGESRASDYGLVKIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (527)
Q Consensus 248 ~~~~~~~~~~~~g~v~~D~~---------g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL 318 (527)
..|... .+.||+++.++. .+|.+|.|||.....+.+.- ...+++|+|||+|+.+.|
T Consensus 149 I~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~-------------~G~y~WNsGiF~~~a~~~ 213 (478)
T PRK15460 149 IVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA-------------SGEYYWNSGMFLFRAGRY 213 (478)
T ss_pred cCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH-------------cCCEEEecceeheeHHHH
Confidence 443332 357999988642 26999999998765443321 235899999999999988
Q ss_pred HHHHHhhCCCC--------------Cch--h-hhh--------HHhhhhc--CceEEEEecceEEecCCHHHHHHH
Q 009720 319 FKLLRWRYPTS--------------NDF--G-SEI--------IPAAIME--HDVQAYIFRDYWEDIGTIKSFYEA 367 (527)
Q Consensus 319 ~~ll~~~~~~~--------------~d~--~-~di--------i~~li~~--~~V~~~~~~g~w~dIgt~~d~~~A 367 (527)
...+++..|.. .++ . .+. |..++-+ .++.+.+.+-.|.|+|++.++.+.
T Consensus 214 l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 214 LEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 77666554420 010 0 111 2222222 567888877779999999999886
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-18 Score=169.91 Aligned_cols=243 Identities=18% Similarity=0.302 Sum_probs=160.9
Q ss_pred ceEEEEEeCCCCCccccCcc-CCCccceeeCC-cchhHHHHHHHHHH-cCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 94 NVAAIILGGGAGTKLFPLTL-RAATPAVPVAG-CYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~-~~PKpLlpIgG-k~pLId~~l~~l~~-~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
+|++||||||.|||||||+. ..||+++++.| + .|++.++..+.. .+..++++||+.....+ +.+++-+-+.+.
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~---v~eql~e~~~~~ 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFI---VKEQLPEIDIEN 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHH---HHHHHhhhhhcc
Confidence 37899999999999999975 59999999955 6 999999999988 57899999998755332 112221111111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC--HHHHHHHH---HHcCCcEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSH---VDRDADIT 245 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d--l~~ll~~h---~~~~ad~t 245 (527)
. .+++-.... +.||.|+..+.-.+.. +..+.-++|+++||+.... |.+.++.. .+.+.-+|
T Consensus 77 ~---~~illEP~g---------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVT 142 (333)
T COG0836 77 A---AGIILEPEG---------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVT 142 (333)
T ss_pred c---cceEeccCC---------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEE
Confidence 0 113332222 4899999877655542 1223469999999988543 66666653 23454344
Q ss_pred EEEEEcCCCCCCCceEEEECC------CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHH
Q 009720 246 ISCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (527)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~D~------~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~ 319 (527)
+...|... ...||+++..+ -.+|.+|.|||.....+.+. ....+++|+|+|+|+...+.
T Consensus 143 fGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l 207 (333)
T COG0836 143 FGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFL 207 (333)
T ss_pred EecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHH
Confidence 44433322 35799998854 23699999999876543322 12358999999999999887
Q ss_pred HHHHhhCCCC-----------Cc----------hh---hhhHHhhhhc--CceEEEEecceEEecCCHHHHHHHHH
Q 009720 320 KLLRWRYPTS-----------ND----------FG---SEIIPAAIME--HDVQAYIFRDYWEDIGTIKSFYEANM 369 (527)
Q Consensus 320 ~ll~~~~~~~-----------~d----------~~---~dii~~li~~--~~V~~~~~~g~w~dIgt~~d~~~An~ 369 (527)
+.++...|.- .+ |. ..=+..++-+ .++.+.+.+-.|-|+|++.++++...
T Consensus 208 ~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 208 EELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 7777655430 00 10 0113333323 67888888878999999999988643
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=156.43 Aligned_cols=219 Identities=16% Similarity=0.203 Sum_probs=152.6
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.|||||||.||||.|||...||+|+.|.|+ |||+++++.|.++||++|+||+||..+++ ++|...| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy-------~--- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY-------D--- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc-------C---
Confidence 6799999999999999999999999999999 99999999999999999999999988775 6776555 2
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
|+++....-. .-....++..|+++++ +.-++.+|.....++ +........-+......
T Consensus 69 vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~- 126 (231)
T COG4750 69 VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG- 126 (231)
T ss_pred eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC-
Confidence 6666543221 1256688999999885 578899999876654 11111111212211111
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHH---HHHHHHhhCCCC--
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV---LFKLLRWRYPTS-- 329 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~i---L~~ll~~~~~~~-- 329 (527)
..+-=++..+.+|+|+++.---. ..+..+|+..|+... +.++++..+-..
T Consensus 127 -~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~ 181 (231)
T COG4750 127 -KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLEN 181 (231)
T ss_pred -CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchh
Confidence 12222466778899998764211 256788999999763 445666554221
Q ss_pred Cc-hhhhhHHhhhhcCceEEEEecc-eEEecCCHHHHHHHHHHhh
Q 009720 330 ND-FGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 330 ~d-~~~dii~~li~~~~V~~~~~~g-~w~dIgt~~d~~~An~~ll 372 (527)
.. |...+.-.-+++.+++.-..++ .-+++++.++|.+....++
T Consensus 182 ~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 182 RKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 12 3344555566667777666654 4678999999988776644
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=161.15 Aligned_cols=235 Identities=15% Similarity=0.168 Sum_probs=155.1
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
.++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.++ +..+.+++.+++. . ++
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~-~-------~~- 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCR-G-------FG- 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHH-H-------cC-
Confidence 35789999999999993 5999999999 99999999999876534433 3356677766553 2 12
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEE--EE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITI--SC 248 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv--~~ 248 (527)
++++...+.. ..||+++ ..+...++ ...+.++++.||.-+ ...+..+++.+.+. .+.++ ++
T Consensus 109 --v~vi~~~~~~-------~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~ 173 (293)
T PLN02917 109 --ADVIMTSESC-------RNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAV 173 (293)
T ss_pred --CEEEeCCccc-------CCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEe
Confidence 3333221211 1377776 56766664 124789999999833 45689999987653 44433 33
Q ss_pred EEcCCCCCCCceEEE--ECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC
Q 009720 249 AAVGESRASDYGLVK--IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~--~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~ 326 (527)
.+...+++.+||.++ .|++|+++.|..++-.....+ .+ ..+.....++|+|.|+.+.|. .+....
T Consensus 174 ~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~--~~~~i~~~n~Giy~f~~~~L~-~l~~l~ 240 (293)
T PLN02917 174 TSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KV--NPQFPYLLHLGIQSYDAKFLK-IYPELP 240 (293)
T ss_pred eecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cc--ccccceEEEEEEEEeCHHHHH-HHHcCC
Confidence 344434467899875 788899887775532211000 00 012236889999999999998 444433
Q ss_pred CC---CCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhcc
Q 009720 327 PT---SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (527)
Q Consensus 327 ~~---~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~ 374 (527)
++ ...+.++++ ++++ .+|.++..+.....|||++|+.+|+..+.++
T Consensus 241 ~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 241 PTPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCcccchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 32 345566765 4444 6888888765566999999999999887543
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=139.43 Aligned_cols=210 Identities=14% Similarity=0.127 Sum_probs=139.6
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCc-hhHHHHHHHhhccCCcccCCCe
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+||||||.|+||+. ..||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+..++. . . ..
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~--~---~~ 67 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLV-----A--R---AV 67 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhh-----c--C---Cc
Confidence 79999999999963 369999999999 9999999999998 8999999998753 23322221 1 0 01
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
++++... .+..++++.++..++ ..+.++++.||. +. ...+..+++.+.+. +.++.+.+..
T Consensus 68 ~~~~~~~-----------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~ 129 (217)
T TIGR00453 68 PKIVAGG-----------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA 129 (217)
T ss_pred EEEeCCC-----------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc
Confidence 3333211 134578888876661 247899999998 33 45578888877653 3444554443
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~ 332 (527)
.++..+|++|.+..+.|+... ....+ .|.|+...|.+++.....+. .+
T Consensus 130 ------~~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~~~~~~-~~ 177 (217)
T TIGR00453 130 ------DTLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALARAKEEG-FE 177 (217)
T ss_pred ------ceEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHHHHhcC-CC
Confidence 335555667878777663211 22333 69999999988776433222 22
Q ss_pred hhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHH
Q 009720 333 GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (527)
Q Consensus 333 ~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ 370 (527)
..|....+.. ..++..+..+..+.+|+|++||..|...
T Consensus 178 ~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 3443433333 3678777777667899999999888653
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=139.17 Aligned_cols=217 Identities=16% Similarity=0.122 Sum_probs=141.0
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCc-hhHHHHHHHhhccCCccc
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~ 170 (527)
.++.+||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+ .+... .
T Consensus 2 ~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~----~~~~~---~ 70 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAE----LLLAK---D 70 (227)
T ss_pred CceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHH----Hhhcc---C
Confidence 45789999999999995 3479999999999 99999999999865 899999998754 22222 11111 0
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-e-cCCHHHHHHHHHHcCCcEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~tv~~ 248 (527)
..+.++.. . .+.+++++.++..++ ..+.++++.||.- . ...+..+++.+.+.+ ..+.+
T Consensus 71 --~~~~~~~~--~---------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~ 130 (227)
T PRK00155 71 --PKVTVVAG--G---------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILA 130 (227)
T ss_pred --CceEEeCC--c---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEE
Confidence 11333321 1 256889998887663 2468999999983 3 455899999876653 34444
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+..+ .+..+ +++|.+..+.+. .. ....-+.|.|+.+.|.+++......
T Consensus 131 ~~~~~----~~~~v--~~~g~~~~~~~r---~~----------------------~~~~~~p~~f~~~~l~~~~~~~~~~ 179 (227)
T PRK00155 131 VPVKD----TIKRS--DDGGGIVDTPDR---SG----------------------LWAAQTPQGFRIELLREALARALAE 179 (227)
T ss_pred Eeccc----cEEEE--cCCCceeecCCh---HH----------------------heeeeCCccchHHHHHHHHHHHHhc
Confidence 44433 12222 556766655321 11 1122247999999988877654322
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
..+..|....+.+ ..++..+..+..+.+|+|++||..|...+.
T Consensus 180 -~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 180 -GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred -CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 2233443333322 256777776666889999999999987654
|
|
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-14 Score=137.42 Aligned_cols=228 Identities=15% Similarity=0.219 Sum_probs=145.4
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
+||+|+|.|+||. +|+|++++|+ |||.|+++++.++++++|+|++.. +.+.+++. . ++ ++
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~-------~g---~~ 61 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-K-------FG---IE 61 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-H-------cC---CE
Confidence 7999999999993 7999999999 999999999999899999999864 44554443 2 22 22
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
++...+.. ..|+ +.+..+...+. ....+.++++.||. +. ...+.++++.+.+.+.++++.+.+..+.
T Consensus 62 ~v~~~~~~-------~~Gt-~r~~~~~~~l~---~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~ 130 (238)
T TIGR00466 62 VCMTSKHH-------NSGT-ERLAEVVEKLA---LKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDA 130 (238)
T ss_pred EEEeCCCC-------CChh-HHHHHHHHHhC---CCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCH
Confidence 22111110 1244 33433433332 01236788899998 33 3457889988766567788888876542
Q ss_pred CC---CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009720 255 RA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (527)
Q Consensus 255 ~~---~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d 331 (527)
.. .+...+..|++|+...|...+-......+ .....|+. ..++...|+|.|++++|.++.... ++..+
T Consensus 131 ~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~-~~~le 201 (238)
T TIGR00466 131 EEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWK-PCVLE 201 (238)
T ss_pred HHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCC-CCccc
Confidence 11 22444555788988888776432110000 00112221 236779999999999998876542 22111
Q ss_pred -hh-hhhHHhhhhcCceEEEEecce-EEecCCHHHH
Q 009720 332 -FG-SEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 364 (527)
Q Consensus 332 -~~-~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~ 364 (527)
.+ -|.++.+-.+.+|.+...++. -..|+||+|+
T Consensus 202 ~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 EIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 11 245666666689998888765 4589999997
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-14 Score=137.22 Aligned_cols=212 Identities=17% Similarity=0.180 Sum_probs=141.1
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
.+||||||.|+||++. .||+|+|++|+ |||+|+++++..++ +++|+|++++........+ +.+ . .. ..
T Consensus 2 ~~vILAaG~s~R~~~~---~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~-~~~-~----~~-~~ 70 (218)
T cd02516 2 AAIILAAGSGSRMGAD---IPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKEL-AKY-G----LS-KV 70 (218)
T ss_pred EEEEECCcccccCCCC---CCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHH-Hhc-c----cC-CC
Confidence 5899999999999752 79999999999 99999999999976 8999999987654443332 111 0 01 11
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-e-cCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+.++... .+..++++.++..++. ...+.++++.||+- . ...+..+++.+.+.++ .+.+.+..
T Consensus 71 ~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~ 134 (218)
T cd02516 71 VKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVT 134 (218)
T ss_pred eEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEecc
Confidence 3443221 1457889988877631 13478999999983 3 3457899998865443 34444433
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~ 332 (527)
+ ++...|++|.+..+.|..+. ....++ ++|+.+.|..++...... ..+
T Consensus 135 ~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~~ 182 (218)
T cd02516 135 D------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEE-GEE 182 (218)
T ss_pred c------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhc-CCC
Confidence 2 23446778989888764221 345566 999999998887665433 223
Q ss_pred hhhhHHhhhhc-CceEEEEecceEEecCCHHHHHH
Q 009720 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYE 366 (527)
Q Consensus 333 ~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~ 366 (527)
.+|....+.+. .++..+..+..-.||+||+||..
T Consensus 183 ~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 183 FTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 44544333332 46777665555569999999954
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=142.39 Aligned_cols=208 Identities=13% Similarity=0.120 Sum_probs=139.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
|.++.+||||||.|+||. ...||+++|++|+ |||+|+++++.+++ +++|+|++++......+.+. .. +
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~----~~---~ 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL----PE---I 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc----cc---C
Confidence 456889999999999994 4589999999999 99999999999987 79999999875544322221 11 1
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~ 248 (527)
. .+.++... .+..++|+.++..++ .+.+++..||. +.+ ..+..+++...+ .+.++.+
T Consensus 72 ~--~v~~v~gG-----------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~ 130 (378)
T PRK09382 72 K--FVTLVTGG-----------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPA 130 (378)
T ss_pred C--eEEEeCCC-----------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEE
Confidence 1 13333211 246788999987774 26789999996 334 346777776543 3567788
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.++.+ +..|+...+|. ..+..+ ++|.... .+.+.+.. ..
T Consensus 131 ~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~----~~ 169 (378)
T PRK09382 131 LPVAD--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAA----DG 169 (378)
T ss_pred EEecc--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHH----hC
Confidence 88776 34566545543 355444 6776432 11122111 11
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
..+ .+|..+.+... .+|..+.-+..|.+|+||+||..|+..+..
T Consensus 170 ~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 170 RGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 122 34555554443 688888888899999999999999887654
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=130.35 Aligned_cols=216 Identities=19% Similarity=0.220 Sum_probs=137.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
++.+||||||.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. .+ +.
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~-~~-------~~ 63 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVAR-KY-------GA 63 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHH-Hh-------CC
Confidence 3579999999999993 4999999999 99999999999987 788888773 455555443 21 10
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
.+.++......+ -..|+.++++.++..+++. ....+.++++.||. +....+..+++.+.+.+++.++.+.+
T Consensus 64 -~~~~~~~~~~~~-----~~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 64 -EVPFLRPAELAT-----DTASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred -CceeeCChHHCC-----CCCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 011221111000 0137889999998877521 01237899999999 44567899999988877887777776
Q ss_pred cCCCCCCCceEEEECCCC-ceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 251 VGESRASDYGLVKIDNMG-RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g-~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
..+. .-++... +++| .+..+.++.... . ++ ....+..++|+|+++++.|.+. .
T Consensus 137 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~--------------q~-~~~~~~~n~~~y~~~~~~~~~~-------~ 190 (223)
T cd02513 137 FHRF--PWRALGL-DDNGLEPVNYPEDKRTR-R--------------QD-LPPAYHENGAIYIAKREALLES-------N 190 (223)
T ss_pred cCcC--cHHheee-ccCCceeccCcccccCC-c--------------CC-ChhHeeECCEEEEEEHHHHHhc-------C
Confidence 5542 2233332 2233 222221111100 0 00 0123567889999999977531 0
Q ss_pred CchhhhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHH
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANM 369 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~ 369 (527)
.+ -..++..|..+.+ -.||+|++||..|..
T Consensus 191 -~~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 191 -SF---------FGGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred -Cc---------cCCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 00 1457878877764 789999999988864
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=142.10 Aligned_cols=134 Identities=25% Similarity=0.351 Sum_probs=75.1
Q ss_pred chhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCC-C---ccCCCCC-CCCCCCccCCCeeeeceeee
Q 009720 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA-F---HFYDPKT-PFYTSPRFLPPTKIDNCRIK 405 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~-~---~~~~~~~-~i~~~~~~~~p~~i~~~~i~ 405 (527)
+| .|.++.++.++ ++.++|||.|+ ++|++||.++++.... . ....+.. .+...+.+.+.+.+.+
T Consensus 29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g---- 97 (231)
T TIGR03532 29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD---- 97 (231)
T ss_pred cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC----
Confidence 44 57888888766 88889999999 9999999999976421 0 0001111 1112223333333322
Q ss_pred eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee--------
Q 009720 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-------- 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-------- 475 (527)
.++||++|.|++ +.| .+++||++|.|++++.|...+.++++ +.||.++.|.+
T Consensus 98 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~------------------~~Ig~~~~I~~~~~~~~~~ 159 (231)
T TIGR03532 98 QVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN------------------VHIGAGAVLAGVIEPPSAK 159 (231)
T ss_pred CeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC------------------cEEcCCcEEccccccccCC
Confidence 344444444442 222 24566666666666666433333332 66666666653
Q ss_pred -eEEcCCCEECCCcEEeCC
Q 009720 476 -CIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 476 -~iI~~~~~Ig~~~~i~~~ 493 (527)
++|++++.||.+++|...
T Consensus 160 ~v~IGd~v~IG~gsvI~~g 178 (231)
T TIGR03532 160 PVVIEDNVLIGANAVILEG 178 (231)
T ss_pred CeEECCCcEECCCCEEcCC
Confidence 566666666666666433
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=128.24 Aligned_cols=119 Identities=13% Similarity=0.226 Sum_probs=88.2
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+++.+++.+ .++ +.
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~---v~ 65 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSN---IT 65 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCC---eE
Confidence 7999999999997 58999999999 99999999999999999999999876554333321 122 45
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-e-cCCHHHHHHHHHHcCCcE
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADI 244 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~ 244 (527)
++.... |..|++++++.++.+ . ...+.++++.||+- + ...+..+++.+.+.+.++
T Consensus 66 ~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 66 LVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 543221 225889999988762 1 13478999999993 3 345788888776655543
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-14 Score=132.21 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=93.2
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.+||||||+||||++ .||+|+|++|+ |||+|+++++..+++++|+++++++.+.+..|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999975 79999999999 9999999999999999999999987777766664211
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEE
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~ 248 (527)
..+.. +. -.|...++..++..+. ..++|++++||+.+ ...+..+++.+...+......+
T Consensus 65 ~~~~~-~~---------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~ 125 (183)
T TIGR00454 65 KDYKN-AS---------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVM 125 (183)
T ss_pred cEEEe-cC---------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 12221 11 1477788888775442 24789999999854 5568889998766555444333
|
At this time this gene appears to be present only in Archea |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=128.14 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=92.5
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++..++. .++ ++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~--------~~~---~~ 61 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE--------RYG---IK 61 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT--------TTT---SE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh--------ccC---ce
Confidence 6999999999996 49999999999 999999999999999999999988 34443332 112 45
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHHHHcCCcEEEEE
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tv~~ 248 (527)
++.... |..|+..+|+.++..+. ..+.|++++||+.+ + ..+..+++.+.+.+.++.+..
T Consensus 62 ~v~~~~--------~~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 62 VVVDPE--------PGQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEE-ST--------SSCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEecc--------ccCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 544332 12599999999987763 35899999999954 4 457999998887777765544
|
... |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=118.01 Aligned_cols=103 Identities=33% Similarity=0.542 Sum_probs=88.7
Q ss_pred Ceeee-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe
Q 009720 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (527)
Q Consensus 396 p~~i~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~ 474 (527)
|+.|. +++|.+++||++|.|+++.|++|+||++|+|+++|+|.+++++++ +.||.++.|.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 45564 478889999999999989999999999999999999999999987 8999999999
Q ss_pred eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEe
Q 009720 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI 521 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I 521 (527)
+|+|+++++|++++++.+.....+. .+.+..+|+++|++++++
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDRA----RFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred eEEECCCCEECCCCEECCCcccccc----cceEcCCeEEEEecccCC
Confidence 9999999999999999887433332 445558899999988764
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=129.17 Aligned_cols=218 Identities=14% Similarity=0.126 Sum_probs=135.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchh-HHHHHHHhhccCCcccCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~-i~~hl~~~y~~~~~~~~~ 172 (527)
+.+||||||.|+||+ ...||+|++++|+ |||+|+++++.++ .+++|+|+++..... +.+.+ +.| + +..
T Consensus 3 ~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~-~~~-~----~~~ 72 (230)
T PRK13385 3 YELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLM-KQL-N----VAD 72 (230)
T ss_pred eEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHH-Hhc-C----cCC
Confidence 679999999999996 3479999999999 9999999999886 589999999764322 22222 222 1 111
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
..++++... .+..++++.++..++ ..+.++++.||. +.. ..+..+++.+.+.++ .+.+.+
T Consensus 73 ~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~~~ 134 (230)
T PRK13385 73 QRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICAVE 134 (230)
T ss_pred CceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEEEe
Confidence 124444211 134588888887664 235678889998 334 447888888766544 333333
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
+.+ .+... ++|.+....++ .. .+..-+.|.|+.+.|.+..+.... ..
T Consensus 135 ~~d------ti~~~-~~~~~~~~i~r---~~----------------------~~~~qtpq~f~~~~l~~~~~~~~~-~~ 181 (230)
T PRK13385 135 VKD------TVKRV-KDKQVIETVDR---NE----------------------LWQGQTPQAFELKILQKAHRLASE-QQ 181 (230)
T ss_pred ccc------eEEEE-cCCeeEeccCH---HH----------------------HhhhcCCceeeHHHHHHHHHHHHh-cC
Confidence 332 12222 33544333221 11 222335799999888776653221 22
Q ss_pred chhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 331 DFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 331 d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
.+.++....+.. ..+|..+.-+.....|+|++|+..|...+..
T Consensus 182 ~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 182 FLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred CCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 233443333332 3677777777778999999999999876643
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=118.18 Aligned_cols=110 Identities=23% Similarity=0.349 Sum_probs=85.5
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.+||+|||+||||.- .-|||++++|+ |||+|+++.+.+ .+++|++++..+.....+|+.+. +
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------g--- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------G--- 63 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------C---
Confidence 5699999999999972 45999999999 999999999988 78999999999988888888632 2
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cC-CHHHHHHHHH
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHV 238 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~-dl~~ll~~h~ 238 (527)
++++. +++ .|--.-++.+++.+. .++|++++|+.+ +. .+..+++.+.
T Consensus 64 v~vi~---tpG-------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 VKVIE---TPG-------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEE---cCC-------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 56664 232 266667777776664 599999999966 33 3566666554
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=123.70 Aligned_cols=120 Identities=18% Similarity=0.327 Sum_probs=89.1
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++++.+.++++|+|+++++...+.+++. .++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~--- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA--------GLP--- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc--------CCC---
Confidence 4689999999999975 9999999999 9999999999999999999999886554433221 112
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-e-cCCHHHHHHHHHHcCCc
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDAD 243 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad 243 (527)
+.++.... +..|++++++.++..+.. ..+.++++.||+- . ...+..+++.+.+.+++
T Consensus 64 ~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33333221 125999999999877641 3478999999993 3 45578888877654443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=120.95 Aligned_cols=107 Identities=12% Similarity=0.185 Sum_probs=81.3
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+... +++|+|++++..+. . .. ++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~-~~-------~~--- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----Y-AL-------LG--- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----H-hh-------cC---
Confidence 4689999999999973 9999999999 9999999999988 89999999886543 1 11 11
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHH
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSH 237 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h 237 (527)
++++.... |..|+.++|+.++..++ .+.++++.||+-+ . ..+..+++.+
T Consensus 59 ~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 33443221 23589999999987664 4789999999943 4 3467777765
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=121.20 Aligned_cols=121 Identities=15% Similarity=0.283 Sum_probs=91.1
Q ss_pred CCCCCccCCCeeee-ceee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCc
Q 009720 387 FYTSPRFLPPTKID-NCRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (527)
Q Consensus 387 i~~~~~~~~p~~i~-~~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 462 (527)
+.....+.+.+.|. ++.| .+++|+++|.|++ +.|. +++||++|.|+++++|.+++++.+
T Consensus 14 i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~----------------- 76 (163)
T cd05636 14 IKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG----------------- 76 (163)
T ss_pred ECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC-----------------
Confidence 33333344444453 2444 2588899999974 6775 699999999999999999888776
Q ss_pred cceEeCCCcEEeeeEEcCCCEECCCcEEeCC------------------------CCcCCCccCCCceEEecCeEEEccC
Q 009720 463 VPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK------------------------DDVQEADRPELGFYIRSGITIIMEK 518 (527)
Q Consensus 463 ~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~------------------------~~v~~~~~~~~~~~i~~g~~vi~~~ 518 (527)
+.|++++.+.+|+|+++++|++++.+.+. ..++++++++.++.|..| ++|+++
T Consensus 77 --~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ig~~ 153 (163)
T cd05636 77 --TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VKIGPG 153 (163)
T ss_pred --CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cEECCC
Confidence 89999999999999999999999999762 234455566666666666 456888
Q ss_pred CEeCCCccC
Q 009720 519 ATIEDGMVI 527 (527)
Q Consensus 519 ~~I~~g~vi 527 (527)
++|++|++|
T Consensus 154 ~~i~agsvV 162 (163)
T cd05636 154 SWVYPGCVV 162 (163)
T ss_pred CEECCCcEe
Confidence 888888875
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-11 Score=121.32 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=135.3
Q ss_pred cCCCCCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhcc
Q 009720 87 RRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFG 165 (527)
Q Consensus 87 ~~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~ 165 (527)
+.++.++.+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+. ++++|+|++++......+.+.+.+
T Consensus 17 ~~~~~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~-- 90 (252)
T PLN02728 17 SAVVKEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI-- 90 (252)
T ss_pred ccccccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc--
Confidence 34556777899999999999996 3479999999999 9999999999985 899999999876433332221211
Q ss_pred CCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce---eecC-CHHHHHHHHHHcC
Q 009720 166 NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH---LYRM-DYMDFIQSHVDRD 241 (527)
Q Consensus 166 ~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~---l~~~-dl~~ll~~h~~~~ 241 (527)
+ ..+.++. .. .+..++|+.++..++. +..+|+.+|. +... .+..+++...+.+
T Consensus 91 -----~-~~i~~v~--gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~g 147 (252)
T PLN02728 91 -----D-VPLKFAL--PG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHG 147 (252)
T ss_pred -----C-CceEEcC--CC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC
Confidence 1 1133321 11 1446779888876641 3446677773 3333 3678888776655
Q ss_pred CcEEEEEEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHH
Q 009720 242 ADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (527)
Q Consensus 242 ad~tv~~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~l 321 (527)
+ .+.+.++.+ .+...++++.|.. .+....+...+. --.|+.+.|.+.
T Consensus 148 a--~i~~~~~~d------tik~v~~~~~v~~---t~~R~~l~~~QT----------------------PQ~F~~~~l~~a 194 (252)
T PLN02728 148 A--AVLGVPVKA------TIKEANSDSFVVK---TLDRKRLWEMQT----------------------PQVIKPELLRRG 194 (252)
T ss_pred e--EEEeecchh------hEEEecCCCceee---ccChHHeEEEeC----------------------CccchHHHHHHH
Confidence 4 455555443 2333455554433 233222221111 245677777665
Q ss_pred HHhhCCCCCchhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 322 LRWRYPTSNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 322 l~~~~~~~~d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
.+...... .+.+|-...+.. ..+|....-+..-.-|.||+|+..|...+.+
T Consensus 195 ~~~~~~~~-~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 195 FELVEREG-LEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HHHHHhcC-CCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 55433222 123443333222 2556665544456789999999999876643
|
|
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=118.43 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=81.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|.+|.+||||||.|+||+ ..||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ . . ++
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~-~-------~~ 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----A-A-------FG 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----H-h-------cC
Confidence 456899999999999995 279999999999 99999999998 78999999987543211 1 1 11
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eecC-CHHHHHHHHHH
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVD 239 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~ 239 (527)
+.++..... +..|+..+|+.++...+ .+.++++.||+ +... .+..+++.+.+
T Consensus 63 ---~~~v~~~~~-------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 63 ---LPVIPDSLA-------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred ---CcEEeCCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 233322111 12588899988876542 47899999999 4443 46777776543
|
|
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-11 Score=112.48 Aligned_cols=122 Identities=18% Similarity=0.312 Sum_probs=94.2
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
.+..+.+||||||+|+||+ .+|.|+|+.|+ ||++++++.+.+++.+++++++++...+.. ..+..
T Consensus 2 ~~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~----~a~~~----- 66 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAV----EALLA----- 66 (199)
T ss_pred CCcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHH----Hhhhc-----
Confidence 4567899999999999998 89999999999 999999999999999999999999722221 11211
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHc
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR 240 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~ 240 (527)
...++++...+ |.+|.+.+++.+...+.. ..+.++++.||+ +...++..+++.+..+
T Consensus 67 -~~~~~~v~npd--------~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 67 -QLGVTVVVNPD--------YAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred -cCCeEEEeCcc--------hhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 12356665443 558999999999877752 125899999998 4456788888877655
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.1e-11 Score=112.01 Aligned_cols=235 Identities=15% Similarity=0.219 Sum_probs=164.0
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+..+||+|-=..||| --|||-.|+|+ |||.|+.+++.++|.++++|.|.. +++.+++. . ||.
T Consensus 3 ~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~-~-------~G~- 64 (247)
T COG1212 3 KFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ-A-------FGG- 64 (247)
T ss_pred ceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH-H-------hCC-
Confidence 346899999899999 45999999999 999999999999999999999954 67777774 2 331
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.+-+...+-. .|| +-+..+...+. ..+.+-++-+-||.=+ ...+..+++...+.++++.-++.+.
T Consensus 65 ~avmT~~~h~---------SGT-dR~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i 131 (247)
T COG1212 65 EAVMTSKDHQ---------SGT-DRLAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKI 131 (247)
T ss_pred EEEecCCCCC---------Ccc-HHHHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeec
Confidence 1222222211 376 56666655543 2344667777899843 3447888888777788887777776
Q ss_pred CCCC---CCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 252 GESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 252 ~~~~---~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+++ ..+-..|.+|.+|+-+.|...|-+...+. . ...+.+...|+|.|++++|.++..+....
T Consensus 132 ~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~ps~ 197 (247)
T COG1212 132 TDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALKPSP 197 (247)
T ss_pred CCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcCCch
Confidence 6532 13456677899999999998876543211 0 01357889999999999999887765322
Q ss_pred CCchh-hhhHHhhhhcCceEEEEecceE-EecCCHHHHHHHHHHhhc
Q 009720 329 SNDFG-SEIIPAAIMEHDVQAYIFRDYW-EDIGTIKSFYEANMALTK 373 (527)
Q Consensus 329 ~~d~~-~dii~~li~~~~V~~~~~~g~w-~dIgt~~d~~~An~~ll~ 373 (527)
-...+ -|-|+.+-...+|.+...+..- ..++|++|+.++...+.+
T Consensus 198 LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 198 LEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred hHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 11111 1234444456899999988665 899999999999887754
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=114.46 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=82.4
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++++.. ++++|+|++++..+. +.. . .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~-----~--~~~--- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQ-----A--GFG--- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhh-----c--cCC---
Confidence 468999999999996 259999999999 999999999975 599999998754321 111 0 111
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eecCC-HHHHHHHHHHcCCc
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 243 (527)
+.++..... +..|+.++|+.++..++ .+.++++.||+ +...+ +..+++...+.+++
T Consensus 62 ~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 333332211 23699999999987764 47899999998 44544 56777665443333
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=111.91 Aligned_cols=214 Identities=16% Similarity=0.227 Sum_probs=140.9
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V 175 (527)
|||+|+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.+. .+++.+.. +.| +. .+
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a-~~~-------g~-~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVA-KSY-------GA-SV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHH-HHc-------CC-Ee
Confidence 7999999999993 5999999999 99999999999986 688877664 34554433 232 21 12
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.+..+.... .+..|+.++++.++..++.. ...+.++++.+|.-+ ..++..+++.+.+.++|..+.+.+...
T Consensus 64 ~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~ 136 (222)
T TIGR03584 64 PFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF 136 (222)
T ss_pred EEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 222111110 11248889999998877521 234779999999854 357899999988877898888877543
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~ 333 (527)
. + .+. ...+++|++..+........ .++ ....+..+.++|+++++.|.+ . . .+.
T Consensus 137 ~-~-~~~-~~~~~~g~~~~~~~~~~~~~--------------rQd-~~~~y~~nga~y~~~~~~~~~---~----~-~~~ 190 (222)
T TIGR03584 137 P-I-QRA-FKLKENGGVEMFFPEHFNTR--------------SQD-LEEAYHDAGQFYWGKSQAWLE---S----G-PIF 190 (222)
T ss_pred C-h-HHh-eEECCCCcEEecCCCcccCC--------------CCC-CchheeeCCeEEEEEHHHHHh---c----C-Ccc
Confidence 1 1 122 24456677665542211000 011 012366799999999998752 1 1 111
Q ss_pred hhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHH
Q 009720 334 SEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMA 370 (527)
Q Consensus 334 ~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~ 370 (527)
..++..|..+.. -.||+|++||..|...
T Consensus 191 ---------~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 191 ---------SPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred ---------CCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 356778887764 7899999999998654
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=111.94 Aligned_cols=107 Identities=11% Similarity=0.263 Sum_probs=74.5
Q ss_pred CCCCCceEEEEEeCCCCCccccCccCCCccceeeCC-cchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCC
Q 009720 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (527)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgG-k~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~ 167 (527)
++++.++.+||||||+|+||+ .+|+|+|++| + |||+|+++++... +++|+|++++ .. | .
T Consensus 3 ~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~--------~-~-- 62 (196)
T PRK00560 3 NPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KK--------F-E-- 62 (196)
T ss_pred CccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hh--------c-c--
Confidence 455677899999999999995 6899999999 9 9999999999876 8999999875 11 1 0
Q ss_pred cccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHH
Q 009720 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDF 233 (527)
Q Consensus 168 ~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~l 233 (527)
+. ++++...+.. ..|...++..++... ..+.++++.||+-+ ..+ +..+
T Consensus 63 --~~---~~~v~d~~~~-------~~gpl~gi~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 63 --FN---APFLLEKESD-------LFSPLFGIINAFLTL------QTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred --cC---CcEEecCCCC-------CCCcHHHHHHHHHhc------CCCeEEEEecCcCcCCHHHHHHH
Confidence 11 2333321111 136666666554333 24789999999944 444 3444
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-11 Score=120.68 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=32.5
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+-|++||+||++|.|.+..++.....+|.++.|.++ +-|..+..|+|+++|
T Consensus 237 vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~-vgI~gh~~IgD~~~I 287 (338)
T COG1044 237 VQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQ-VGIAGHLEIGDGVTI 287 (338)
T ss_pred eEEccccEECCCcEEeccceeeccceECCeEEECcc-eeecCceEEcCCCEE
Confidence 455566666666666666666666666666666554 444666777777654
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=117.74 Aligned_cols=132 Identities=23% Similarity=0.296 Sum_probs=81.7
Q ss_pred ccCCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-HhhhcCCccceEe
Q 009720 392 RFLPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASLLAEGKVPIGV 467 (527)
Q Consensus 392 ~~~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~~~~~~~~~~~~I 467 (527)
.+.+++.|. ++.|.++.|+++|.|++ +.+.+++||++++|++++.|.....++++ ......++ .+.+.++ +.|
T Consensus 35 ~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~---~~i 111 (193)
T cd03353 35 VIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEG---SKA 111 (193)
T ss_pred EECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCC---CEe
Confidence 333444442 25566677777777773 66677777777777777766543333321 11111111 2334445 566
Q ss_pred CCCcEEeeeEEcCCCEECCCcEEeCCCC-------cCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 468 GRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 468 g~~~~I~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++.++|.+|+||+++.||+++.+.+.++ +++..+++.++.+..| +.|++++.|++|++|
T Consensus 112 ~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 112 NHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred cccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 6667777899999999999998887543 4445555555555555 456999999998874
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-10 Score=109.89 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=80.6
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
.++.+||||||+|+||+ .+|+|+|++|+ |||+|+++.+... +++|+|++++. +.. ..+ ...
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~-~~~----~~~------ 66 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERY-QSL----LPP------ 66 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHH-Hhh----ccC------
Confidence 35789999999999996 47999999999 9999999999754 78999988642 111 111 111
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cC-CHHHHHHHHH
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHV 238 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~-dl~~ll~~h~ 238 (527)
.+.++.... |.+|..++++.++..++ .+.++++.||+-+ .. .+..+++.+.
T Consensus 67 -~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 -GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 144443322 23699999999987764 3789999999944 43 3677777653
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-11 Score=121.93 Aligned_cols=45 Identities=11% Similarity=-0.056 Sum_probs=24.9
Q ss_pred EEecCCHHHHHHHHHHhhccCCC-CccCCCCCCCCCCCccCCCeee
Q 009720 355 WEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPTKI 399 (527)
Q Consensus 355 w~dIgt~~d~~~An~~ll~~~~~-~~~~~~~~~i~~~~~~~~p~~i 399 (527)
+.-+++|...+..-..++.+.++ ...++|.+.+.+++.+.+.+.|
T Consensus 67 ~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I 112 (324)
T TIGR01853 67 ALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTI 112 (324)
T ss_pred EEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEE
Confidence 55678888776655666544332 2345555555555544444444
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=119.58 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
.|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|++....+.+.++ +.+
T Consensus 2 ~~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~-----~~~---- 66 (366)
T PRK14489 2 QISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDL-----FPG---- 66 (366)
T ss_pred CCCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhh-----ccC----
Confidence 3567899999999999995 379999999999 999999999975 4899999776544333221 111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eecCC-HHHHHHHHHHcCCc
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 243 (527)
+.++...... +.|...+++.++..++ .+.++++.||+ +...+ +..+++.+.+.+++
T Consensus 67 ----~~~i~d~~~g-------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDILPG-------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCCCC-------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 1222222211 1488899999887653 36799999998 34444 57777765554554
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.3e-11 Score=96.96 Aligned_cols=78 Identities=17% Similarity=0.438 Sum_probs=54.4
Q ss_pred ECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCC
Q 009720 409 ISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (527)
Q Consensus 409 I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (527)
|+++|.|++ +.|.+++||++|.|+++|+|++++++.. +.||+++.|.+|+|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 455666653 4555677777777777777777776665 77777777777777777777777
Q ss_pred cEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCc
Q 009720 488 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 525 (527)
Q Consensus 488 ~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~ 525 (527)
+.+.+ ++|++++.|++++
T Consensus 63 ~~v~~--------------------~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKD--------------------CLVGSGYRVEAGT 80 (81)
T ss_pred CEEcc--------------------CEECCCcEeCCCC
Confidence 77754 5667777777664
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-11 Score=117.21 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=51.4
Q ss_pred ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-------eeeEEcCCCEECCCcEEeCCC
Q 009720 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-------RNCIIDKNVKIGKDVVIVNKD 494 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-------~~~iI~~~~~Ig~~~~i~~~~ 494 (527)
+++||++|.|+++|.|......+. -++.||++++| ++|.||+++.|+.++.|....
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~~-----------------~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~ 138 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASGG-----------------GVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHV 138 (254)
T ss_pred eEEECCCCEECCCCEECCcccCCC-----------------CcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCc
Confidence 355555555555555554433220 01556666555 456666666666666666655
Q ss_pred CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 495 DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 495 ~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.+++++.++.++.|..+ +.|+++++|+++++|
T Consensus 139 ~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 139 EVGDYAIIGGLVAVHQF-VRIGRYAMIGGLSAV 170 (254)
T ss_pred EECCCcEEeccCEECCC-cEECCCCEEeeeeeE
Confidence 56666666666666555 445788888777764
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.8e-11 Score=112.07 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=56.4
Q ss_pred cCCCeeeec-eee-eeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 393 FLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 393 ~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.+++.|++ +.| .++.||++|+|++ +.|.++.||++|+|++++.|+++++... +.||+
T Consensus 18 ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~-------------------~~Ig~ 78 (193)
T cd03353 18 IGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG-------------------ATVGP 78 (193)
T ss_pred ECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC-------------------CEECC
Confidence 344444432 334 2688999999984 8888899999999999999998877665 56666
Q ss_pred CcEEe-eeEEcCCCEECCCcEEe
Q 009720 470 NTKIR-NCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 470 ~~~I~-~~iI~~~~~Ig~~~~i~ 491 (527)
+++|. +++|+++++|+.++.+.
T Consensus 79 ~~~I~~~~~Ig~~~~Ig~~~~i~ 101 (193)
T cd03353 79 FAHLRPGTVLGEGVHIGNFVEIK 101 (193)
T ss_pred ccEEcCccEECCCCEECCcEEEe
Confidence 66665 56666666655555554
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.4e-11 Score=117.26 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=35.1
Q ss_pred eEeCCCcEE-------eeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 465 IGVGRNTKI-------RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 465 ~~Ig~~~~I-------~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.||+++.| ++|.||+++.|+.++.|.....+++++.++.++.|..+ +.||++++|+.+++|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF-CRIGRHAMVGGGSGV 171 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC-cEECCCCEECcCCEE
Confidence 555555555 34555555555555555544445555555555555555 345888888777754
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-11 Score=117.17 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=25.1
Q ss_pred CCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEe
Q 009720 386 PFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELK 438 (527)
Q Consensus 386 ~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~ 438 (527)
.+.+++.+.+++.|++ +.| .++.||++|.|++ +.| .++.||++|+|++++.|.
T Consensus 7 ~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~ 63 (254)
T cd03351 7 IVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIG 63 (254)
T ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeec
Confidence 3333444444444432 223 2455666666653 333 235555555555555554
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=107.50 Aligned_cols=91 Identities=25% Similarity=0.485 Sum_probs=64.5
Q ss_pred CCccCCCeee-eceee-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEeee----EEeCCcccCchhhHHhhhcCCcc
Q 009720 390 SPRFLPPTKI-DNCRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKV 463 (527)
Q Consensus 390 ~~~~~~p~~i-~~~~i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~----~i~~~~~~~~~~~~~~~~~~~~~ 463 (527)
++-+.|.+.| .+++| .++.|+++++|+ +....-.||++|.|.+||+|+.. +.+|.+
T Consensus 17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlR-gD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~----------------- 78 (176)
T COG0663 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLR-GDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD----------------- 78 (176)
T ss_pred ceEECCCCEEEEeEEECCCCEECCceEEE-ccCCceEECCCceecCCeEEecCCCCCeEECCC-----------------
Confidence 3333333333 33444 356666666666 33356789999999999988753 444444
Q ss_pred ceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCC
Q 009720 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 499 (527)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~ 499 (527)
+.||+++.|+.|.|++++.||.|++|.|+..+++.
T Consensus 79 -vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~ 113 (176)
T COG0663 79 -VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDG 113 (176)
T ss_pred -cEEcCccEEEEeEECCCcEEecCceEeCCcEECCC
Confidence 99999999999999999999999999987544444
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=114.99 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=40.7
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeE-----EEccCCEeCCCcc
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMV 526 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~-----vi~~~~~I~~g~v 526 (527)
+.||+++.|. ++.|++++.||.+|+|.+...+....+++++++|..+.. .||+++.|+.|++
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~ 169 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSR 169 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCce
Confidence 5666666653 566777777777777777777777777777777766632 2455555555554
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=119.00 Aligned_cols=51 Identities=22% Similarity=0.185 Sum_probs=28.0
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEE-----EccCCEeCCCcc
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGMV 526 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v-----i~~~~~I~~g~v 526 (527)
+.|++|++||+++.|....++....++++++.|..+..+ ||+++.|+.+++
T Consensus 238 v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~ 293 (343)
T PRK00892 238 VQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSG 293 (343)
T ss_pred eEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCe
Confidence 445555556666666555555555666666666555332 455555555543
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=117.36 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=32.1
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe-----EEEccCCEeCCCccC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMVI 527 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~I~~g~vi 527 (527)
+.||+++.|. ++.|+.++.||.++.|.+...+..+..++++++|..+. +.||+++.|++|++|
T Consensus 106 t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 106 TRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGV 174 (262)
T ss_pred eEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecce
Confidence 4555555552 33344444444444444444444444444444444332 335777777777764
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-09 Score=104.70 Aligned_cols=214 Identities=15% Similarity=0.167 Sum_probs=121.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+.+||||||.|+||+ ...||++++++|+ |+|.|+++.+.+. .+++|+|++.....+..+.+... .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------~ 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------K 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----------T
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----------C
Confidence 468999999999997 3689999999999 9999999999885 79999999976553322222211 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.+.++..-. .-.++++.++..+.+ ..+.+++=-|== +. ..-+.++++..++ +.+..+.+.++
T Consensus 67 ~v~iv~GG~-----------tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~ 130 (221)
T PF01128_consen 67 KVKIVEGGA-----------TRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPV 130 (221)
T ss_dssp TEEEEE--S-----------SHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-
T ss_pred CEEEecCCh-----------hHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEec
Confidence 255554221 346889999888863 223333322210 22 2236777776654 24456666666
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d 331 (527)
.+ .+...|++|.+....+. ..+..+ =---.|+.+.|.+..++......+
T Consensus 131 ~D------Tik~v~~~~~v~~tldR---~~l~~~----------------------QTPQ~F~~~~l~~a~~~a~~~~~~ 179 (221)
T PF01128_consen 131 TD------TIKRVDDDGFVTETLDR---SKLWAV----------------------QTPQAFRFELLLEAYEKADEEGFE 179 (221)
T ss_dssp SS------EEEEESTTSBEEEEETG---GGEEEE----------------------EEEEEEEHHHHHHHHHTHHHHTHH
T ss_pred cc------cEEEEecCCcccccCCH---HHeeee----------------------cCCCeecHHHHHHHHHHHHhcCCC
Confidence 54 34566667777654432 111111 123578888887766554221112
Q ss_pred hhhhhHHhhhh--cCceEEEEecceEEecCCHHHHHHHHHHh
Q 009720 332 FGSEIIPAAIM--EHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 332 ~~~dii~~li~--~~~V~~~~~~g~w~dIgt~~d~~~An~~l 371 (527)
+ +|-- .++. ..+++...-+..-.-|.||+|+..|...+
T Consensus 180 ~-tDda-sl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 180 F-TDDA-SLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp H-SSHH-HHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred c-cCHH-HHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 2 2211 1222 35565555444567899999999997655
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-11 Score=128.88 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=40.9
Q ss_pred CCCCCCCccCCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEee-eEEeCCcccCch
Q 009720 385 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTE 451 (527)
Q Consensus 385 ~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~-~~i~~~~~~~~~ 451 (527)
..|...+.+.+.+.|. .|.|.+|+|+++|.|++ +.|.+++||+++.|++++.|.. +++.++..++..
T Consensus 283 ~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~ 352 (481)
T PRK14358 283 VLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNF 352 (481)
T ss_pred cEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCC
Confidence 3333344445555553 36667788888888884 6667788888888887777763 333333334443
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=109.81 Aligned_cols=94 Identities=17% Similarity=0.358 Sum_probs=66.6
Q ss_pred eeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEe-----eeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee
Q 009720 406 DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~ 475 (527)
++.||++|.|.+ +.|. ..+||++|.|+++|+|+ +++++.. +.||+++.|++
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~I~~ 86 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN-------------------GHVGHGAILHG 86 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-------------------CEECCCCEEcC
Confidence 556666666663 4443 46899999999999994 4555555 89999999999
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCc
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 525 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~ 525 (527)
|+|++++.||.+++|.+...+++++.++.++ +|.++..|++++
T Consensus 87 siIg~~~~IG~ga~I~~g~~IG~~s~Vgags-------~V~~~~~ip~~~ 129 (192)
T TIGR02287 87 CIVGRNALVGMNAVVMDGAVIGENSIVAASA-------FVKAGAEMPAQY 129 (192)
T ss_pred CEECCCCEECCCcccCCCeEECCCCEEcCCC-------EECCCCEECCCe
Confidence 9999999999999997765555444444443 334555555544
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=115.75 Aligned_cols=114 Identities=9% Similarity=0.158 Sum_probs=78.2
Q ss_pred CCCCCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCC
Q 009720 88 RRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (527)
Q Consensus 88 ~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~ 167 (527)
.++++.++.+||||||+|+||+ .+|+|+|++|+ |||+|+++.+.. ..++|+|+++..... .+. .
T Consensus 168 ~~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~---~~~-~----- 231 (369)
T PRK14490 168 GRAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAE---QYR-S----- 231 (369)
T ss_pred cccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhh---HHh-h-----
Confidence 3444567899999999999996 58999999999 999999999976 478888877653211 111 1
Q ss_pred cccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHHHHH
Q 009720 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQS 236 (527)
Q Consensus 168 ~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~ 236 (527)
++ +.++..... .+|...++..++.... .+.++++.||+-+ ..+ +..+++.
T Consensus 232 --~~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 232 --FG---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred --cC---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 12 344433221 1477778877765432 4689999999944 444 4565553
|
|
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=104.55 Aligned_cols=87 Identities=17% Similarity=0.429 Sum_probs=66.9
Q ss_pred eeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEE-----eeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee
Q 009720 406 DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~ 475 (527)
++.||++|+|++ +.|. .++||++|.|+++|.| ++++++.. +.|++++.+.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEEC
Confidence 567777777763 5554 3789999999999999 44666655 89999999999
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
|+||+++.||.++.|.....+++++.++.++.+..+
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~ 114 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAG 114 (155)
T ss_pred CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCC
Confidence 999999999999999886656665555555444443
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=116.08 Aligned_cols=119 Identities=16% Similarity=0.326 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEee-----------eEEeCCcc
Q 009720 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-----------TVMLGADY 447 (527)
Q Consensus 381 ~~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~-----------~~i~~~~~ 447 (527)
++....+...+.+.|.+.|.+ +.| .++.|+++|+|+. .+.+++||++|.|+++|.|.. +++..+
T Consensus 49 ~~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g-~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~-- 125 (269)
T PLN02296 49 FDKAPVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRG-DVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN-- 125 (269)
T ss_pred cCCCCccCCCCEECCCcEEEcceEECCCCEECCCCEEEc-CCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC--
Confidence 333444555555555555532 222 2455555555542 123468999999999999963 333333
Q ss_pred cCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 448 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.||+++.|++|+|++++.||.+++|..+..+++++.++.|+ +|.++++|+++++
T Consensus 126 -----------------v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagS-------vV~~~~~I~~~~~ 180 (269)
T PLN02296 126 -----------------VTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGA-------LVRQNTRIPSGEV 180 (269)
T ss_pred -----------------CEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCC-------EEecCCEeCCCeE
Confidence 899999999999999999999999998765555554444443 3355555555543
|
|
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.2e-10 Score=106.60 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=85.3
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeE
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V 175 (527)
.+||||||.|+||+ .+|.|++++|+ |||+|+++.+.+.++++|+|++++..+.+ ..+.+.... ...+
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~~~------~~~~ 68 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYLLA------DERI 68 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhhhc------CCCe
Confidence 58999999999997 37999999999 99999999988899999999998765432 112111111 0114
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cC-CHHHHHHHHHHcC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHVDRD 241 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~-dl~~ll~~h~~~~ 241 (527)
+++... .|..|.+.+|+.++..+.+ ...+.++++.||+-+ .. .+..+++......
T Consensus 69 ~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 69 MLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred EEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 443322 2335889999999877631 235789999999943 43 3677777654433
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=92.66 Aligned_cols=66 Identities=26% Similarity=0.572 Sum_probs=55.3
Q ss_pred ECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCC
Q 009720 409 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (527)
Q Consensus 409 I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (527)
|+++|.|+ ++.|.+++||++|+|++++.|++++++.. +.|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 56677776 35666789999999999999999988877 89999999999999999999999
Q ss_pred cEEeCC
Q 009720 488 VVIVNK 493 (527)
Q Consensus 488 ~~i~~~ 493 (527)
+.+.+.
T Consensus 63 ~~i~~~ 68 (79)
T cd03356 63 VRVVNL 68 (79)
T ss_pred CEEcCC
Confidence 888663
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=107.43 Aligned_cols=89 Identities=17% Similarity=0.351 Sum_probs=60.7
Q ss_pred eeEECCCCEEcc-eeEee----cEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC
Q 009720 406 DAIISHGCFLRE-CTVEH----SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~----svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~ 480 (527)
+++||++|.|++ +.|.. .+||++|.|+++|.|+..... .+.+.++ +.||+++.|.+|+|++
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~-----------~siIg~~---~~Ig~~a~i~g~vIG~ 93 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDT-----------DTIVGEN---GHIGHGAILHGCVIGR 93 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCC-----------CCEECCC---CEECCCcEEeeEEECC
Confidence 555666666663 44433 578999999999988653211 1233333 8999999999999999
Q ss_pred CCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 481 NVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 481 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
++.||.+++|.+...+++++.++.|+.+
T Consensus 94 ~v~IG~ga~V~~g~~IG~~s~Vgags~V 121 (196)
T PRK13627 94 DALVGMNSVIMDGAVIGEESIVAAMSFV 121 (196)
T ss_pred CCEECcCCccCCCcEECCCCEEcCCCEE
Confidence 9999999999876555554444444333
|
|
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-09 Score=104.97 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=78.6
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCc--hhHHHHHHHhhccCCcccCCC
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~--~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+||||||.++||. +|+|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++. . .+
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~-~-------~~-- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK-K-------LG-- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH-H-------cC--
Confidence 7999999999993 4999999999 99999999999987 899999998765 44544442 1 11
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEE
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADIT 245 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~t 245 (527)
++++..... + .+..+...++. ...+.++++.||+-+ ...+..+++.+...+.+++
T Consensus 65 -v~~v~~~~~----------~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 -VKVFRGSEE----------D---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred -CeEEECCch----------h---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 344332211 1 12222222221 234789999999944 3457899998876666554
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=124.13 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=37.6
Q ss_pred eeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhH-HhhhcCCccceEeCCCcEEe--------
Q 009720 406 DAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-------- 474 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~Ig~~~~I~-------- 474 (527)
+++|+++|.|++ +.|. +++||++|+|+.+++|++++++.........-+ .+.+++. +.||+++.+.
T Consensus 321 ~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~---~~Ig~~~~~~~~~~~~~~ 397 (456)
T PRK14356 321 GAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAG---ANIGAGTITCNYDGVNKH 397 (456)
T ss_pred ccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCC---CEECCCceeeccccccCC
Confidence 344444444442 3332 455555555555555555555544211111000 1222222 4444444331
Q ss_pred eeEEcCCCEECCCcEEeCC
Q 009720 475 NCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~ 493 (527)
+++||+++.||.++.|...
T Consensus 398 ~~~igd~~~ig~~~~i~~~ 416 (456)
T PRK14356 398 RTVIGEGAFIGSNTALVAP 416 (456)
T ss_pred CCEECCCcEEcCCCEEeCC
Confidence 3556666666666665543
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-10 Score=92.49 Aligned_cols=76 Identities=13% Similarity=0.412 Sum_probs=67.4
Q ss_pred CCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 394 LPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 394 ~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
.+.+.|. ++.|.+++|+++|.|++ +.|.+|+|++++.|+++|+|.+++++.+ +.|++++
T Consensus 3 g~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~ 63 (81)
T cd04652 3 GENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKC 63 (81)
T ss_pred cCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCC
Confidence 4556664 36677899999999984 8899999999999999999999999887 9999999
Q ss_pred EEeeeEEcCCCEECCCc
Q 009720 472 KIRNCIIDKNVKIGKDV 488 (527)
Q Consensus 472 ~I~~~iI~~~~~Ig~~~ 488 (527)
.+.+|+|+++++|++++
T Consensus 64 ~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 64 KLKDCLVGSGYRVEAGT 80 (81)
T ss_pred EEccCEECCCcEeCCCC
Confidence 99999999999999874
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-10 Score=116.74 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=31.7
Q ss_pred eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe-----EEEccCCEeCCCccC
Q 009720 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMVI 527 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~I~~g~vi 527 (527)
.+.|++|++||+++.|.+..++....++++++.+..+. +.||+++.|+.+++|
T Consensus 229 ~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 229 LVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred CcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 34566666666666666666666666666666664442 234666666666543
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-10 Score=118.40 Aligned_cols=99 Identities=15% Similarity=0.313 Sum_probs=74.1
Q ss_pred eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~ 483 (527)
++.||++|+|++ |.|++|.||+++.|...|.|+++.+..+ +.||.-++++ ++.++.+++
T Consensus 286 ~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~-------------------~~VGPfA~LRPg~~L~~~~h 346 (460)
T COG1207 286 NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG-------------------ATVGPFARLRPGAVLGADVH 346 (460)
T ss_pred eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC-------------------cccCCccccCCcCcccCCCe
Confidence 455555555553 4555555555555555555555554444 7888888887 889999999
Q ss_pred ECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 484 IGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 484 Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
||..|.+.++ .++++.++++-.||++ +.||+++.||+||+
T Consensus 347 IGNFVEvK~a-~ig~gsKa~HLtYlGD--A~iG~~~NiGAGtI 386 (460)
T COG1207 347 IGNFVEVKKA-TIGKGSKAGHLTYLGD--AEIGENVNIGAGTI 386 (460)
T ss_pred EeeeEEEecc-cccCCccccceeeecc--ceecCCceeccceE
Confidence 9999999876 6888999999999988 78899999999986
|
|
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-09 Score=109.41 Aligned_cols=217 Identities=18% Similarity=0.262 Sum_probs=132.9
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHcC-----------CCEEEEEec-cCchhHH
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINSG-----------INKIFVLTQ-FNSASLN 156 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~G-----------i~~I~Iv~~-~~~~~i~ 156 (527)
..+|.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ .-.++|.|+ +..+.+.
T Consensus 13 ~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 13 EGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred cCCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 34689999999999999 578899999998 68 99999999998842 124568887 6778888
Q ss_pred HHHHH-hhccCCc-c---cCCCeEEEeccccCC----CCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCcee
Q 009720 157 RHIAR-TYFGNGT-N---FGDGFVEVLAATQTP----GESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL 225 (527)
Q Consensus 157 ~hl~~-~y~~~~~-~---~~~~~V~vl~~~q~~----~~~~~~~~~Gta~al~~a~~--~l~~~~~~~~e~~Lvl~gD~l 225 (527)
+++.+ .||+... + |.+..+..+..+... ...-.-.+-|.++....... .++++...+.+.+.+.+.|++
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 88864 3344210 0 111112222111000 00001233688876655432 466666678899999999995
Q ss_pred -ecCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCce-EEEECCCCceEEEEecCCccccccccccccccCCCccccccCC
Q 009720 226 -YRMDYMDFIQSHVDRDADITISCAAVGESRASDYG-LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCP 303 (527)
Q Consensus 226 -~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g-~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (527)
...-=-.++-.+.++++++.+-+.+...+. .+-| ++..|..-++.++.|-|...... ...+. -+ ..
T Consensus 169 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~-~~~~g-~l---------~f 236 (323)
T cd04193 169 LVKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEK-RDADG-EL---------QY 236 (323)
T ss_pred cccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhc-cCcCC-cE---------ec
Confidence 433335677788888999988776655322 2344 44445444566666655433211 01110 00 11
Q ss_pred ceeeeeEEEEeHHHHHHHHHh
Q 009720 304 YVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 304 ~l~~~GIYif~~~iL~~ll~~ 324 (527)
+..++.+.+|+.++|.++++.
T Consensus 237 ~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 237 NAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred ccchHhhheeCHHHHHHHHhh
Confidence 345667888999998877653
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-10 Score=108.53 Aligned_cols=27 Identities=30% Similarity=0.110 Sum_probs=12.4
Q ss_pred eEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 465 IGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
+.|++++.|.+|+||+++.|+++++|.
T Consensus 43 s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 43 SYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred CEECCCcEEeeeEECCCCEECCCCEEC
Confidence 444444444444444444444444443
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4e-10 Score=121.43 Aligned_cols=44 Identities=11% Similarity=0.250 Sum_probs=33.4
Q ss_pred eeee-eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 402 CRIK-DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 402 ~~i~-~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
+.|. +++||++|.|++ +.|.+++||++|+|+++|+|.++++..+
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~ 319 (451)
T TIGR01173 274 VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEG 319 (451)
T ss_pred eEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCC
Confidence 4443 577888888884 7778888888888888888887776655
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=102.01 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=65.1
Q ss_pred eeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC
Q 009720 406 DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~ 480 (527)
++.||++|+|++ +.|. .++||++|.|+++|.|.+++.+..... ....++++ +.|+.+++|.+++||+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~-----~~v~IG~~---~~i~~~~~i~~~~IGd 88 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEP-----KPMIIGSN---NVFEVGCKCEALKIGN 88 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCC-----CCeEECCC---CEECCCcEEEeeEECC
Confidence 566777777764 4453 368999999999999988765422100 00112222 5666678888899999
Q ss_pred CCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 481 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
++.||.+++|.....+++++.++.++.|..+
T Consensus 89 ~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 89 NNVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred CCEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 9999999999876666665555555555444
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-10 Score=112.84 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=38.3
Q ss_pred eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.+|++++.||.|+.|-- +.-+.+.+++++.|.+. +-|++||.||+++.|
T Consensus 202 ~V~Igd~VeIGanT~Idr--ga~~dTvIg~~~kIdN~-vqIaHnv~IG~~~~I 251 (338)
T COG1044 202 RVIIGDDVEIGANTTIDR--GALDDTVIGEGVKIDNL-VQIGHNVRIGEHCII 251 (338)
T ss_pred eEEECCceEEcccceecc--ccccCceecCCcEEcce-eEEccccEECCCcEE
Confidence 577777777777777733 34456899999999776 566999999998875
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.6e-10 Score=102.45 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=65.9
Q ss_pred CCCccCCCeeeeceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEee-eEEeCCcccCchhhHHhhhcCCccceEe
Q 009720 389 TSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGV 467 (527)
Q Consensus 389 ~~~~~~~p~~i~~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~I 467 (527)
..+.+.+++.|++ ++.|++++.|++ +++||++|+|+++|.|+. ++++.+ +.|
T Consensus 10 ~~~~i~~~v~ig~----~~~I~~~a~i~~----~v~Ig~~~~I~~~~~i~~~~~Ig~~-------------------~~I 62 (163)
T cd05636 10 EGVTIKGPVWIGE----GAIVRSGAYIEG----PVIIGKGCEIGPNAYIRGYTVLGDG-------------------CVV 62 (163)
T ss_pred CCCEECCCeEEcC----CCEECCCCEEeC----CeEECCCCEECCCCEEcCCCEECCC-------------------CEE
Confidence 3344444444443 555556555543 489999999999999986 555544 999
Q ss_pred CCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 468 GRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 468 g~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
++++.|.+|+|++++.|+.++.+.+. .++++.+++.++.+
T Consensus 63 ~~~~~i~~siig~~~~I~~~~~i~~s-iIg~~~~I~~~~~i 102 (163)
T cd05636 63 GNSVEVKNSIIMDGTKVPHLNYVGDS-VLGENVNLGAGTIT 102 (163)
T ss_pred CCCcEEeeeEecCCCEeccCCEEecC-EECCCCEECCCcEE
Confidence 99999999999999999988777543 46666666666655
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-10 Score=90.09 Aligned_cols=66 Identities=20% Similarity=0.405 Sum_probs=55.8
Q ss_pred ECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCC
Q 009720 409 ISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (527)
Q Consensus 409 I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (527)
|+++|.|++ +.|.+++||++|.|+++|+|.+++++.+ +.|++++.|.+|+|+++++|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 566666663 5666789999999999999999888877 89999999999999999999999
Q ss_pred cEEeCC
Q 009720 488 VVIVNK 493 (527)
Q Consensus 488 ~~i~~~ 493 (527)
+.|...
T Consensus 63 ~~i~~~ 68 (79)
T cd05787 63 CTIPPG 68 (79)
T ss_pred CEECCC
Confidence 888654
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-10 Score=111.13 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=13.5
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
++|++|+.||.+++|..+..+++++.++.+++|
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV 209 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFL 209 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence 444444444444444333333333333333333
|
|
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=101.05 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=80.0
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
+..|.+||||||+++|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. |.. ++
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~--------~~~----~g 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR--------YAE----FG 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh--------hhc----cC
Confidence 56789999999999999 68999999999 999999999988755 555555443221 211 22
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHHHHHHHHcC
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHVDRD 241 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h~~~~ 241 (527)
++++..... ++ |...+|+.++..+. .+.++++.||+=+ ..+ +..+.+...+.+
T Consensus 62 ---~~vv~D~~~-------~~-GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 ---LPVVPDELP-------GF-GPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ---CceeecCCC-------CC-CCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 455544332 12 88999999887764 5899999999944 444 466665554333
|
|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-08 Score=96.96 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=132.4
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCch-hHHHHHHHhhccCCcc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSA-SLNRHIARTYFGNGTN 169 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~-~i~~hl~~~y~~~~~~ 169 (527)
+.++.+||||||.|+||.. ..||.+++++|+ |||+|+++.+..+ .|++|+|+++.... .+.++.. +
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------ 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------ 69 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------
Confidence 3467899999999999985 799999999999 9999999999887 58999999976332 2222221 1
Q ss_pred cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCc--eeecCCHHHHHHHHHHcCCcEEEE
Q 009720 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--HLYRMDYMDFIQSHVDRDADITIS 247 (527)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD--~l~~~dl~~ll~~h~~~~ad~tv~ 247 (527)
.....++++..-. .-.++++.++..+.. ...+.||+--+= .+....+.++++... +....+.
T Consensus 70 ~~~~~v~~v~GG~-----------~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~ 133 (230)
T COG1211 70 SADKRVEVVKGGA-----------TRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAIL 133 (230)
T ss_pred ccCCeEEEecCCc-----------cHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEE
Confidence 1122356554322 456889988888762 122344443331 123344677774333 3444666
Q ss_pred EEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 248 ~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
+.++.+ .+...|+++.+.+...... +...+ .| -.|+.+.|.+.++....
T Consensus 134 alpv~D------Tik~~~~~~~i~~t~~R~~---l~~~Q--------TP--------------Q~F~~~~L~~a~~~a~~ 182 (230)
T COG1211 134 ALPVTD------TLKRVDADGNIVETVDRSG---LWAAQ--------TP--------------QAFRLELLKQALARAFA 182 (230)
T ss_pred EeeccC------cEEEecCCCCeeeccChhh---hhhhh--------CC--------------ccccHHHHHHHHHHHHh
Confidence 666654 2444555666655433221 11111 11 34677777666654433
Q ss_pred CCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 328 TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
...++..|.--......++..+.=+-+-+-|.||+|+.-|+..+.+
T Consensus 183 ~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 183 EGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred cCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 2223222211111114566655545567899999999999877653
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-10 Score=109.96 Aligned_cols=124 Identities=17% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCCCCccCCCeeeec-eee-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCcc
Q 009720 386 PFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (527)
Q Consensus 386 ~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~ 463 (527)
.+...+.+.|++.+.+ +.| .++.|+++++|+. .....+||.+|.|+++|.|+....... ...-.+.++++
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirg-d~~~I~IG~~t~Ig~~~vI~~~~~~~~-----~i~~~tvIG~~-- 132 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRG-DLNKITVGFCSNVQERCVLHAAWNSPT-----GLPAETLIDRY-- 132 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEec-CCcceEECCCCEECCCCEEeecCcccc-----CCCCCcEECCC--
Confidence 3444445555555533 333 2455555555551 112358999999999999963110000 00000122222
Q ss_pred ceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCc
Q 009720 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 525 (527)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~ 525 (527)
+.||++|.|.+|+|++++.||.+++|.++..+++++.++.++ +|.++..|++|.
T Consensus 133 -v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gs-------vV~~g~~Ip~g~ 186 (246)
T PLN02472 133 -VTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGS-------VLPPGRRIPTGE 186 (246)
T ss_pred -CEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCC-------EECCCCEeCCCC
Confidence 899999999999999999999999998765444444433333 334445555544
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=109.41 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHh
Q 009720 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS 456 (527)
Q Consensus 381 ~~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~ 456 (527)
++|.+.+.+++.+..++.|++ |.| .++.||++|.|++ +.|. +++||++|+|++++.|..... .-.|..+ ....
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q--~~~~~g~-~~~v 81 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQ--DLKYKGE-PTRL 81 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCce--eecccCC-CCeE
Confidence 344555555555555555543 444 3566666666663 3332 456666666666666643100 0001000 0011
Q ss_pred hhcCCccceEeCCCcEEee--------eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 457 LLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 457 ~~~~~~~~~~Ig~~~~I~~--------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
.++++ +.|++++.|.+ ++||+++.|+.++.|.....+++++.+..++.+..+ ++|++++.|+.+++
T Consensus 82 ~IG~~---~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~-v~Igd~~~Ig~~~~ 155 (262)
T PRK05289 82 VIGDN---NTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLTA 155 (262)
T ss_pred EECCC---CEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccc-cccCCcEEEeecce
Confidence 12222 66677677653 356666666666666544444444444444444333 44566666665554
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=93.70 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=55.9
Q ss_pred eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcC
Q 009720 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 418 ~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
+.|.+|+||++|+|+ ++.|++++++.. +.|++++.|.+|+|++++.||+++.+.+. .++
T Consensus 8 ~~i~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~~~i~~s-iig 66 (104)
T cd04651 8 GEVKNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRNAVIRRA-IID 66 (104)
T ss_pred CEEEeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCCCEEEeE-EEC
Confidence 444578999999999 999999999988 99999999999999999999999999652 333
Q ss_pred CCccCCCceEE
Q 009720 498 EADRPELGFYI 508 (527)
Q Consensus 498 ~~~~~~~~~~i 508 (527)
+++++++++.+
T Consensus 67 ~~~~Ig~~~~v 77 (104)
T cd04651 67 KNVVIPDGVVI 77 (104)
T ss_pred CCCEECCCCEE
Confidence 33333333333
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=108.48 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=63.0
Q ss_pred CCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhh
Q 009720 382 DPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASL 457 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~ 457 (527)
+|.+.+.+++.+..++.|.+ |.| .++.||++|.|++ +.|. ++.||++++|++++.|+.... +-.|..+ +....
T Consensus 3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq--~~~~~g~-~~~v~ 79 (255)
T PRK12461 3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQ--DFTYKGE-ESRLE 79 (255)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCc--cccccCc-cceeE
Confidence 34444444455545555543 333 3456666666663 3332 455555555555555542100 0001111 01111
Q ss_pred hcCCccceEeCCCcEEee-eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe-----EEEccCCEeCCCcc
Q 009720 458 LAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMV 526 (527)
Q Consensus 458 ~~~~~~~~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~I~~g~v 526 (527)
++++ +.|++++.|.+ +.++.+++||.++.|.+...+...+.+++++.|..+. ++|++++.|+.+++
T Consensus 80 IG~~---~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~ 151 (255)
T PRK12461 80 IGDR---NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCL 151 (255)
T ss_pred ECCc---eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCE
Confidence 2222 55555555542 2233445555555555444454455555555554332 45667776666654
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=118.03 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=44.8
Q ss_pred eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~ 483 (527)
++.||++|.|++ +.|.+|+||++|+|. ++.+.+++++.. +.||++++|. +++|+++++
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~-------------------~~ig~~~~i~~~~~ig~~~~ 332 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDD-------------------VSVGPFSRLREGTVLKKSVK 332 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCC-------------------cEECCCcEECCcccccCCcE
Confidence 567777777774 666777777777774 456677777666 6667777664 467777777
Q ss_pred ECCCcEEe
Q 009720 484 IGKDVVIV 491 (527)
Q Consensus 484 Ig~~~~i~ 491 (527)
||+++.+.
T Consensus 333 Ig~~~~i~ 340 (448)
T PRK14357 333 IGNFVEIK 340 (448)
T ss_pred ecCceeee
Confidence 77666554
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.7e-09 Score=96.26 Aligned_cols=88 Identities=20% Similarity=0.404 Sum_probs=65.1
Q ss_pred eeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEeee----EEeCCcccCchhhHHhhhcCCccceEeCCCcEEeee
Q 009720 406 DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 476 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~ 476 (527)
+..||++|.|++ +.|. .++||++|.|+++|+|.++ ++++.+ +.|+.++.|.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 566677777764 4443 3599999999999999885 344443 899999999999
Q ss_pred EEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 477 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 477 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+|++++.|+.++.+.....+++++.++.+..+..+
T Consensus 79 ~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 99999999999999866555555555555444443
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.00 E-value=6e-09 Score=96.40 Aligned_cols=88 Identities=15% Similarity=0.292 Sum_probs=65.0
Q ss_pred eeEECCCCEEcc-eeEee----cEEcCCcEECCCCEEeee----EEeCCcccCchhhHHhhhcCCccceEeCCCcEEeee
Q 009720 406 DAIISHGCFLRE-CTVEH----SIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 476 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~----svIg~~~~I~~~~~I~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~ 476 (527)
++.||++|.|++ +.|.. .+||++|.|+++|.|... ++++++ +.|++++.|.++
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 79 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGA 79 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECc
Confidence 566777777763 44543 499999999999999863 333333 899999999999
Q ss_pred EEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 477 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 477 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+|++++.|+.++.+.+...+++...++.++.+..|
T Consensus 80 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g 114 (154)
T cd04650 80 KVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114 (154)
T ss_pred EECCCCEEcCCCEEeCCCEECCCCEECCCCEECCC
Confidence 99999999999999876655555555555444443
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=118.21 Aligned_cols=80 Identities=14% Similarity=0.287 Sum_probs=55.3
Q ss_pred cCCCeeeec-eeee-eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 393 FLPPTKIDN-CRIK-DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 393 ~~~p~~i~~-~~i~-~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.+++.|++ |.|. +++||++|+|++ +.|.+|+||++|.|+++|.|+++++..+ +.||+
T Consensus 268 ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~-------------------~~Ig~ 328 (456)
T PRK09451 268 HGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAA-------------------CTIGP 328 (456)
T ss_pred ECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCC-------------------cEecC
Confidence 444566643 5564 688999999984 7888999999999999999988766655 55555
Q ss_pred CcEEe-eeEEcCCCEECCCcEEe
Q 009720 470 NTKIR-NCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 470 ~~~I~-~~iI~~~~~Ig~~~~i~ 491 (527)
++.|. ++.|++++.||.++.|.
T Consensus 329 ~~~i~~~~~i~~~~~ig~~~~i~ 351 (456)
T PRK09451 329 FARLRPGAELAEGAHVGNFVEMK 351 (456)
T ss_pred ceEEeCCCEECCCceeccceeee
Confidence 55554 55555555555554443
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=112.82 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=27.6
Q ss_pred eEeCCCcEEe-----eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 465 IGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 465 ~~Ig~~~~I~-----~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.||+++.|. +++||++++|+.+|.|+....+++++.+..++.|..+ ++||+++.|+.++.
T Consensus 210 v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~ 275 (343)
T PRK00892 210 VEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVG 275 (343)
T ss_pred cEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCE
Confidence 4555555553 3444444444444444433333333333333333222 34566666655554
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-09 Score=87.23 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=54.1
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECC
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (527)
+.|++++.|+ .+++||++|+|+++|+|++++++.+ +.|++++.|.+|++++++.|++
T Consensus 6 ~~I~~~~~i~----~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIG----PNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEEC----CCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 4455566555 3589999999999999999999987 8999999999999999999999
Q ss_pred CcEEeCC
Q 009720 487 DVVIVNK 493 (527)
Q Consensus 487 ~~~i~~~ 493 (527)
++.+.+.
T Consensus 63 ~~~~~~~ 69 (80)
T cd05824 63 WTRLENV 69 (80)
T ss_pred CcEEecC
Confidence 9988653
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-09 Score=101.32 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEee-cEEcCCcEECCCCEE
Q 009720 383 PKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEH-SIVGERSRLDYGVEL 437 (527)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~-svIg~~~~I~~~~~I 437 (527)
+...+...+.+.+.+.|.+ +.| .++.|+++|+|++ +.|.+ ++||++|.|+++++|
T Consensus 12 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 12 PNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3344444444445555533 444 4566666666663 44433 555555555555555
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-08 Score=98.96 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=128.0
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHH--------cCCCEEEEEeccCchhHHHHHHHhh
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCIN--------SGINKIFVLTQFNSASLNRHIARTY 163 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~--------~Gi~~I~Iv~~~~~~~i~~hl~~~y 163 (527)
+.+||||||.||||+ ...||+|+||+ |+ |+|++.++.+.. .+|..+++...+..+++.+|+.+.-
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 368999999999995 78999999999 99 999999999986 3466676666777888888886321
Q ss_pred ccCC--cccCCCeEEEecccc-C-CCCCC--CCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-cC-CHHHH
Q 009720 164 FGNG--TNFGDGFVEVLAATQ-T-PGESG--KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RM-DYMDF 233 (527)
Q Consensus 164 ~~~~--~~~~~~~V~vl~~~q-~-~~~~~--~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~-~~-dl~~l 233 (527)
+... ..|.++.+..+.... . ..+.. .-.+-|.+|.+.... ..++++...+.+.+.+.+.|++. .. |. .+
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-LF 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-HH
Confidence 1111 011111111111110 0 00001 112358887665442 34555555778899999999855 44 43 35
Q ss_pred HHHHHHcCCcEEEEEEEcCCCCCCCceEEEECCCCc--eEEEEecCCcccccc---ccc-cccccCCCccccccCCceee
Q 009720 234 IQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKA---MQV-DTSLLGFSPQEARKCPYVAS 307 (527)
Q Consensus 234 l~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~~g~--V~~~~EKp~~~~~~~---~~v-~~~~~~~~~~~~~~~~~l~~ 307 (527)
+-.+...+.++.+-+.+....+ ..-|.+...++|+ +.++.|=|....... ..+ +++ .......+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~---------~~~~~~~n 225 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDID---------DAPFFLFN 225 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCC---------ceeeccce
Confidence 6677777888887666554422 2345544422354 555555443221100 000 011 11235679
Q ss_pred eeEEEEeHHHHHHHHH
Q 009720 308 MGVYVFKKDVLFKLLR 323 (527)
Q Consensus 308 ~GIYif~~~iL~~ll~ 323 (527)
+....|+.+.+.++++
T Consensus 226 ~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 226 TNNLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 9999999999987765
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=105.71 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=57.3
Q ss_pred eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEee------------eEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKD------------TVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
++.|+++|+|++ +.| .+++||++|+|++++.|.. .+.+|++ +.|++++
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~------------------~~I~~~~ 89 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDN------------------NTIREFV 89 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCC------------------CEECCCC
Confidence 456666666664 334 3578888888888888863 3444443 6777777
Q ss_pred EEe--------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCc
Q 009720 472 KIR--------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 525 (527)
Q Consensus 472 ~I~--------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~ 525 (527)
.|. +++||+++.|+.++.|.....+++++.++.++.+..+ ++|++++.|+.++
T Consensus 90 ~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~-~~Igd~~~Ig~~~ 150 (254)
T TIGR01852 90 TINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLV 150 (254)
T ss_pred EECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC-cEECCCcEEeccC
Confidence 775 4566666666666655444444444444444444333 3334444444443
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=106.24 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=13.3
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
++|++|+.||.++.|.++..+++++.++.|++|
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI 206 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 206 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence 344444444444444443333333333333333
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.1e-10 Score=118.58 Aligned_cols=94 Identities=13% Similarity=0.303 Sum_probs=82.2
Q ss_pred CCCCCCCCccCCCeeee-ceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCC
Q 009720 384 KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461 (527)
Q Consensus 384 ~~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~ 461 (527)
+..+..+..+..+|+|+ ++.|.||+||.||.|| ++.|++|.||.+|+||.||+|++++++++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 34455666777888885 5899999999999999 79999999999999999999999999988
Q ss_pred ccceEeCCCcEE-eeeEEcCCCEECCCcEEeCCCCc
Q 009720 462 KVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDV 496 (527)
Q Consensus 462 ~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~~v 496 (527)
+.|++++.+ .+|||+-++.+|++-++..+..+
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCccccccccc
Confidence 999999999 58999999999999988776444
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-09 Score=99.06 Aligned_cols=101 Identities=22% Similarity=0.357 Sum_probs=68.5
Q ss_pred eeEECCCCEEcc-eeEe-----ecEEcCCcEECCCCEEee----eEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee
Q 009720 406 DAIISHGCFLRE-CTVE-----HSIVGERSRLDYGVELKD----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~-----~svIg~~~~I~~~~~I~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~ 475 (527)
++.||++|+|++ +.|. ++.||++|.|++++.|.. .+.++.+ +.|+.++.|..
T Consensus 20 ~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~------------------~~I~~~~~i~g 81 (167)
T cd00710 20 DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN------------------VSIAHGAIVHG 81 (167)
T ss_pred eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCC------------------ceECCCCEEeC
Confidence 445555555553 3332 467888888888888842 2333333 77777777765
Q ss_pred -eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 476 -CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 476 -~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
|+||+++.||.++.|.+ ..+++++.++.++.|. + ..|++++.|++|+++
T Consensus 82 ~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v 131 (167)
T cd00710 82 PAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVI 131 (167)
T ss_pred CEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEE
Confidence 88899999998888874 4577777777777774 3 456788888777653
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=104.37 Aligned_cols=109 Identities=9% Similarity=0.078 Sum_probs=77.1
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
.+.+||||||+|+||+ .+|.|+|+.|+ ||++|+++.+... +++|+|+++... . ..+ . . .
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~-----~~~-~----~--~ 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--W-----QGT-P----L--E 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--h-----hhc-c----c--c
Confidence 6789999999999996 59999999999 9999999888654 889988886421 0 111 0 0 0
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHHHHHH
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSH 237 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h 237 (527)
.+.++.... +.+|...+|+.++.... .+.++++.||+-+ ..+ +..+++.+
T Consensus 219 ~v~~I~D~~--------~~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 NLPTLPDRG--------ESVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCeEEeCCC--------CCCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 133433222 13599999999987653 3578999999954 444 56666654
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-09 Score=115.21 Aligned_cols=66 Identities=21% Similarity=0.427 Sum_probs=43.5
Q ss_pred eeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCE
Q 009720 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~ 483 (527)
++.||++|.|+ ++.|.+|+||++|+|+ ++.+.+++++.+ +.||+++.|. +|+||++++
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~-------------------~~Ig~~~~i~~~~~Ig~~~~ 342 (458)
T PRK14354 283 NTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDN-------------------VTVGPFAHLRPGSVIGEEVK 342 (458)
T ss_pred ceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCC-------------------cEECCceEecCCCEEeCCcE
Confidence 46777777777 3677777777777777 355666666555 5666666665 566666666
Q ss_pred ECCCcEEe
Q 009720 484 IGKDVVIV 491 (527)
Q Consensus 484 Ig~~~~i~ 491 (527)
|+.++.|.
T Consensus 343 i~~~~~i~ 350 (458)
T PRK14354 343 IGNFVEIK 350 (458)
T ss_pred ECCceEEe
Confidence 66666554
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-09 Score=101.76 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=12.9
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
+.|+.++.|. +|+|++++.||.++.+..
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 4444444443 344555555555544443
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-07 Score=96.62 Aligned_cols=350 Identities=13% Similarity=0.184 Sum_probs=196.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC-CcchhHHHHHHHHHHc----CCC-EEEEEeccC-chhHHHHHHHhh-
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTY- 163 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~-~~~i~~hl~~~y- 163 (527)
..++.+|.||||.||||+ ..-||.++|+. |+ .++|..++++... |.+ ..+|.+.++ .++..+++. +|
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~-k~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVE-KYT 151 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHH-HcC
Confidence 478999999999999997 46899999994 56 8999998887653 443 457788775 455777775 44
Q ss_pred -ccCCc-ccCCCeEEEecc-ccC----CC-CCCCCcc-cChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeecCCHHH
Q 009720 164 -FGNGT-NFGDGFVEVLAA-TQT----PG-ESGKNWF-QGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMD 232 (527)
Q Consensus 164 -~~~~~-~~~~~~V~vl~~-~q~----~~-~~~~~~~-~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ 232 (527)
+.... -|.+..+.-+.. ... .+ .....|+ -|.++...... ..++++...+.+.+.+.+.|++...-=-.
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 21111 111111111111 000 00 0011243 57776554332 23555556778999999999976432246
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCCce-EEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEE
Q 009720 233 FIQSHVDRDADITISCAAVGESRASDYG-LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (527)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g-~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIY 311 (527)
++..|.++++++++=+.+...+.. +-| ++..|..-++.++.|-|.....+ .. ....-.+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~-kgG~l~~~dgk~~lvEysqvp~e~~~~-f~------------~~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADV-KGGTLISYEGKVQLLEIAQVPDEHVNE-FK------------SIEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCC-CccEEEEECCEEEEEEEecCCHHHHHh-hc------------ccccceeeeeeeE
Confidence 788888899998887765443222 234 34444444577777766543210 00 0012357899999
Q ss_pred EEeHHHHHHHHHhhCC--------CC-C-----chhhhhHHhhhhc-CceEEEEec-ceEEecCCHHHHHHHHHHhhccC
Q 009720 312 VFKKDVLFKLLRWRYP--------TS-N-----DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 312 if~~~iL~~ll~~~~~--------~~-~-----d~~~dii~~li~~-~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
.|+-+.|.++++.... .. + .|++ .+-.+++- .+..++.+. .-+.-+.+..|++-+..++....
T Consensus 298 w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et-~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~ 376 (469)
T PLN02474 298 WVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLET-AAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLV 376 (469)
T ss_pred EEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHH-HHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhc
Confidence 9999999887653210 00 0 0111 11122222 344445543 23667777778877777665443
Q ss_pred CCCccCCCCCCCCCCCccCCCeeeec--eeeee--eEE-CCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCc
Q 009720 376 PAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AII-SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (527)
Q Consensus 376 ~~~~~~~~~~~i~~~~~~~~p~~i~~--~~i~~--s~I-~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~ 450 (527)
.......+.....+.+ ..++++ .+|.+ ..+ +--..+ +| .+-.|--++..|.|+++++++++.+.
T Consensus 377 ~~~l~~~~~~~~~~~p----~IeL~~~f~~v~~f~~rf~~iPsl~-~~--d~LtV~Gdv~fG~~v~l~G~v~i~~~---- 445 (469)
T PLN02474 377 DGFVIRNKARTNPSNP----SIELGPEFKKVANFLSRFKSIPSIV-EL--DSLKVSGDVWFGSGIVLKGKVTITAK---- 445 (469)
T ss_pred cCeEEecCcccCCCCC----cEEECcccccHHhHHHhcCCCCCcc-cC--CeEEEeeeeEECCCcEEEEEEEEEcC----
Confidence 2221111111111111 122321 01100 000 000111 11 44567778999999999999988773
Q ss_pred hhhHHhhhcCCccceEeCCCcEEeeeEEcCCC
Q 009720 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (527)
Q Consensus 451 ~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~ 482 (527)
+..|..|.+|+++.|++|-.+.
T Consensus 446 ----------~~~~~~ip~g~~l~~~~~~~~~ 467 (469)
T PLN02474 446 ----------SGVKLEIPDGAVLENKDINGPE 467 (469)
T ss_pred ----------CCCeeecCCCcEecceeecccC
Confidence 4455889999999988887664
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-09 Score=113.81 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=58.2
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
++.|+++|.|+ .+++||++|+|+++|+|++++++.+ +.|+++++|.+|+|++++.||
T Consensus 274 ~~~I~~~~~I~----~~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~~~~ig 330 (459)
T PRK14355 274 DTTIYPGVCIS----GDTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGDDVAIG 330 (459)
T ss_pred CCEEeCCcEEe----CCCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECCCCEEC
Confidence 45555555554 3589999999999999999888777 899999999999999998888
Q ss_pred CCcEEeCCCCcCCCccCCC
Q 009720 486 KDVVIVNKDDVQEADRPEL 504 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~ 504 (527)
+++.|.....+.+++.+++
T Consensus 331 ~~~~i~~~~~i~~~~~ig~ 349 (459)
T PRK14355 331 PMAHLRPGTELSAHVKIGN 349 (459)
T ss_pred CCCEECCCCEeCCCCEECC
Confidence 8777776555555544443
|
|
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=95.66 Aligned_cols=98 Identities=13% Similarity=0.270 Sum_probs=71.1
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEee---eEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-----eeeE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-----RNCI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-----~~~i 477 (527)
++.|.++++|.. ++.||++|.|+++|.|.. .+.++++ +.|+++|.| .+|+
T Consensus 6 ~~~i~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~~~~~ 63 (155)
T cd04745 6 SSFVHPTAVLIG----DVIIGKNCYIGPHASLRGDFGRIVIRDG------------------ANVQDNCVIHGFPGQDTV 63 (155)
T ss_pred CeEECCCCEEEc----cEEECCCCEECCCcEEeCCCCcEEECCC------------------CEECCCCEEeecCCCCeE
Confidence 345555555542 467888888888888875 2555554 888888888 5688
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
|++++.|+.++++.+ ..+++.+.++.+++|.+| ++|+++++|+++++|
T Consensus 64 Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~v 111 (155)
T cd04745 64 LEENGHIGHGAILHG-CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAFV 111 (155)
T ss_pred EcCCCEECCCcEEEC-CEECCCCEECCCCEEeCC-CEECCCCEECCCCEe
Confidence 888888888888765 467777777777777777 456788877777653
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-09 Score=84.34 Aligned_cols=74 Identities=23% Similarity=0.373 Sum_probs=63.6
Q ss_pred CCCeeee-ceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 394 LPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 394 ~~p~~i~-~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
.+.+.|. ++.|.+++|+++|.|+ ++.+.+|+||++|+|+++|.|.+++++.+ +.|++++
T Consensus 3 g~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~~ 63 (79)
T cd03356 3 GESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGENV 63 (79)
T ss_pred cCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCCC
Confidence 4556664 4777789999999998 58899999999999999999999998877 8999999
Q ss_pred EEee-eEEcCCCEECC
Q 009720 472 KIRN-CIIDKNVKIGK 486 (527)
Q Consensus 472 ~I~~-~iI~~~~~Ig~ 486 (527)
.|.+ ++|+++++|+.
T Consensus 64 ~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 64 RVVNLCIIGDDVVVED 79 (79)
T ss_pred EEcCCeEECCCeEECc
Confidence 9987 88888888763
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-09 Score=100.96 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=43.0
Q ss_pred eEeCCCcEE-eeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.||+|+-+ -+|=|..+|+||.+|+++|+..+..+..+++..+|.+. +-|.+.+.||++++|
T Consensus 107 T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~-saVHQFvrIG~~ami 169 (260)
T COG1043 107 TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGL-SAVHQFVRIGAHAMI 169 (260)
T ss_pred EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCc-ceEEEEEEEcchhee
Confidence 344443333 26777788999999999999888888889888777555 444666666665543
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.1e-09 Score=111.44 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=51.9
Q ss_pred eeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCE
Q 009720 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~ 483 (527)
++.||++|.|+ ++.|.+|+||++|+|+ ++++.++++..+ +.||.++.|. +|+|+++++
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~-------------------~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG-------------------VKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC-------------------cEECCCCEECCCCEEeCceE
Confidence 46666677776 3566666677766664 445555555544 7888888886 688888888
Q ss_pred ECCCcEEeCCCCcCCCccCCCce
Q 009720 484 IGKDVVIVNKDDVQEADRPELGF 506 (527)
Q Consensus 484 Ig~~~~i~~~~~v~~~~~~~~~~ 506 (527)
||+++.|.+. .+++++.++++.
T Consensus 340 Ig~~~~i~~~-~i~~~~~i~~~~ 361 (450)
T PRK14360 340 IGNFVEIKKS-QLGEGSKVNHLS 361 (450)
T ss_pred ECCCEEEecc-ccCCCcEeccce
Confidence 8888887642 344444433333
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.5e-09 Score=112.93 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=24.5
Q ss_pred eeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 406 ~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
+++||++|.|+ ++.|.+|+||++|.|+. +.+.++++..+
T Consensus 289 ~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~ 328 (482)
T PRK14352 289 RTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAG 328 (482)
T ss_pred cCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCC
Confidence 46677777777 36666777777777653 45555555444
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-09 Score=106.94 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=80.3
Q ss_pred CCCCCCCccCCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCc
Q 009720 385 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (527)
Q Consensus 385 ~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 462 (527)
+-+.....+.+.|+|. ++.|+.|+||.+|.|++ +.|.+|+|.++++||+||.|++|++..+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 3445567788899996 68999999999999995 8999999999999999999999999887
Q ss_pred cceEeCCCcEEeeeEEcCCCEECCCcEEeCC
Q 009720 463 VPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 463 ~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+.||++++++||+||.+-++.+..+-.+.
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 89999999999999999999977776654
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=102.63 Aligned_cols=85 Identities=24% Similarity=0.428 Sum_probs=60.3
Q ss_pred cEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-----------eeEEcCCCEECCCc
Q 009720 423 SIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----------NCIIDKNVKIGKDV 488 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-----------~~iI~~~~~Ig~~~ 488 (527)
+.||.+|.|.++|+|... +.+|++ +.|+++|.|. +|+||+++.||.++
T Consensus 71 V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~a 132 (269)
T PLN02296 71 VQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSA 132 (269)
T ss_pred eEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCc
Confidence 456666666666666543 244443 6666666663 68899999999998
Q ss_pred EEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 489 VIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 489 ~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+|.+ ..+++++.++.++.|.+| ++|++++.|++|++|
T Consensus 133 vI~g-~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 133 VLHG-CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred eecC-CEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 8865 467888888888888888 556888888888764
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.5e-09 Score=90.14 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=51.0
Q ss_pred eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~ 483 (527)
+++|+++|.|++ +.| .+++||++|.|++++.|.+..+.+. .+..++.+.+++|++++.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 577777777773 444 4577777777777777766544443 344466677777777777
Q ss_pred ECCCcEEeCCCCcCCCccCCCce
Q 009720 484 IGKDVVIVNKDDVQEADRPELGF 506 (527)
Q Consensus 484 Ig~~~~i~~~~~v~~~~~~~~~~ 506 (527)
||.++.+.+...++++..++.++
T Consensus 76 Ig~~~~v~~~~~ig~~~~i~~~~ 98 (119)
T cd03358 76 IGANATILPGVTIGEYALVGAGA 98 (119)
T ss_pred ECcCCEEeCCcEECCCCEEccCC
Confidence 77777776554444444444333
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-08 Score=94.09 Aligned_cols=21 Identities=24% Similarity=0.022 Sum_probs=12.2
Q ss_pred ceEEecCCHHHHHHHHHHhhc
Q 009720 353 DYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 353 g~w~dIgt~~d~~~An~~ll~ 373 (527)
.++..++.++...+....+.+
T Consensus 61 ~~iiai~~~~~~~~i~~~l~~ 81 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLKA 81 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHh
Confidence 356667766666655555443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=96.61 Aligned_cols=97 Identities=14% Similarity=0.266 Sum_probs=68.1
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEee---eEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-----eeeEE
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-----RNCII 478 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-----~~~iI 478 (527)
+.|++++.|. ..+.||++|.|+++|+|.. .++++.+ +.||++|+| .+|+|
T Consensus 15 ~~I~~~a~I~----G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~------------------t~Ig~~~~I~~~~~~~siI 72 (192)
T TIGR02287 15 AYVHPTAVLI----GDVILGKRCYVGPLASLRGDFGRIVLKEG------------------ANIQDNCVMHGFPGQDTVV 72 (192)
T ss_pred cEECCCCEEE----eeEEECCCCEECCCcEEEccCCceEECCC------------------CEECCCeEEeccCCCCCeE
Confidence 3444444443 2467888888888888864 3555554 788888888 46888
Q ss_pred cCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 479 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 479 ~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++++.||.+++|.+ ..+++++.++.++.+..| ++|++++.|++|++|
T Consensus 73 g~~~~Ig~~a~I~~-siIg~~~~IG~ga~I~~g-~~IG~~s~Vgags~V 119 (192)
T TIGR02287 73 EENGHVGHGAILHG-CIVGRNALVGMNAVVMDG-AVIGENSIVAASAFV 119 (192)
T ss_pred CCCCEECCCCEEcC-CEECCCCEECCCcccCCC-eEECCCCEEcCCCEE
Confidence 88888888888776 357777777777777666 556777777777653
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-08 Score=90.45 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=14.7
Q ss_pred eEeCCCcEE-eeeEEcCCCEECCCcEEeCCCCcC
Q 009720 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
+.||.++.| .++.|++++.|++++.|.+...++
T Consensus 82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~ 115 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIY 115 (139)
T ss_pred CEECCCCEECCCCEECCCCEEcCCCEEcCCeEec
Confidence 444444444 244444444444444444443333
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=93.73 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=41.5
Q ss_pred ecEEcCCcEECCCCEEee---eEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-----------eEEcCCCEECCC
Q 009720 422 HSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-----------CIIDKNVKIGKD 487 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-----------~iI~~~~~Ig~~ 487 (527)
++.||++|.|+++|.|.. .+.+|++ +.|++++.|.+ ++||+++.|+.+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~ 78 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGEN------------------NIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVG 78 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCC------------------CEECCCcEEecCCCCCCCCCCCeEECCCCEECCC
Confidence 355666666666666542 2333433 55555555543 345555554444
Q ss_pred cEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 488 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 488 ~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.|.+ ..+++++.++.++.|..| ++|+++++|++|++
T Consensus 79 ~~i~~-~~IGd~~~Ig~~a~I~~g-v~Ig~~~~Igagsv 115 (164)
T cd04646 79 CKCEA-LKIGNNNVFESKSFVGKN-VIITDGCIIGAGCK 115 (164)
T ss_pred cEEEe-eEECCCCEEeCCCEECCC-CEECCCCEEeCCeE
Confidence 44443 334444444444444444 33355555554443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.3e-08 Score=95.70 Aligned_cols=47 Identities=13% Similarity=0.333 Sum_probs=26.9
Q ss_pred ccCCCeeeec-eeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEe
Q 009720 392 RFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK 438 (527)
Q Consensus 392 ~~~~p~~i~~-~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~ 438 (527)
.+.+.+.|.+ |.|.+++||++|+|+ .+.+.+++||++|.|++++.|.
T Consensus 21 ~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 21 KLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred EeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence 4444455533 555556666666666 3555566666666666666654
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=91.50 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=63.1
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
++.|+++|+|.. .+..+.||++|.|+++|+|..+.....+. +......++++ +.|++++.+.+++|++++.||
T Consensus 27 ~~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~---~~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~v~Ig 99 (161)
T cd03359 27 KTIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSKG---VAFFPLHIGDY---VFIGENCVVNAAQIGSYVHIG 99 (161)
T ss_pred ceEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCCC---ccccCeEECCc---cEECCCCEEEeeEEcCCcEEC
Confidence 466666666652 12347899999999999998764332210 00001223344 788889999999999999999
Q ss_pred CCcEEeCCCCcCCCccCCCceEEecC
Q 009720 486 KDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+++.|.....+++...++.++.+..|
T Consensus 100 ~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 100 KNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred CCCEEcCCCEECCCcEECCCCEECCC
Confidence 99998776555554444444444333
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-08 Score=93.94 Aligned_cols=140 Identities=16% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhh----
Q 009720 382 DPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESE---- 453 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~---- 453 (527)
.+...+.+.+.+.++++|++ +.| .+++|++++.|++ +.| .++.|+.+++|+++|.|.+...++.+.++....
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~ 84 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGW 84 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcE
Confidence 34555666666666666654 555 3366666677764 555 467777777777777777765555433221110
Q ss_pred ------HHhhhcCCccceEeCCCcEEe-----eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeC
Q 009720 454 ------IASLLAEGKVPIGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 522 (527)
Q Consensus 454 ------~~~~~~~~~~~~~Ig~~~~I~-----~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~ 522 (527)
-..++.++ +.|+.++.+. ++.|++++.|+.++.|.....+++...++.++.+..+ +.|++++.|+
T Consensus 85 ~~~~~~~~v~Ig~~---~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig 160 (205)
T cd03352 85 VKIPQLGGVIIGDD---VEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIG 160 (205)
T ss_pred EEcCCcceEEECCC---EEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEc
Confidence 01233333 5566665554 3455555555555555544444444444433333332 2334444444
Q ss_pred CCc
Q 009720 523 DGM 525 (527)
Q Consensus 523 ~g~ 525 (527)
.++
T Consensus 161 ~~~ 163 (205)
T cd03352 161 GQV 163 (205)
T ss_pred CCC
Confidence 433
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.77 E-value=4e-08 Score=79.65 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=58.7
Q ss_pred CCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 394 LPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 394 ~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
.+.+.|. ++.|.+++|+++|.|++ +.|.+++|++++.|+++++|.+++++++ +.|++++
T Consensus 3 g~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~ 63 (79)
T cd05787 3 GRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKGC 63 (79)
T ss_pred cCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCCC
Confidence 4566664 36777899999999984 8889999999999999999998888877 8888877
Q ss_pred EEe-eeEEcCCCEECC
Q 009720 472 KIR-NCIIDKNVKIGK 486 (527)
Q Consensus 472 ~I~-~~iI~~~~~Ig~ 486 (527)
+|. +++|+++++||+
T Consensus 64 ~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 64 TIPPGSLISFGVVIGD 79 (79)
T ss_pred EECCCCEEeCCcEeCc
Confidence 765 466666666553
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.2e-08 Score=90.44 Aligned_cols=97 Identities=20% Similarity=0.334 Sum_probs=67.6
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-----eE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-----CI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-----~i 477 (527)
+++|+++|.|. .+..||+++.|+++++|..+ ++++.+ +.|+++++|.. ++
T Consensus 5 ~~~i~~~a~i~----g~v~ig~~~~I~~~~~I~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~ 62 (153)
T cd04645 5 SAFIAPNATVI----GDVTLGEGSSVWFGAVLRGDVNPIRIGER------------------TNIQDGSVLHVDPGYPTI 62 (153)
T ss_pred CeEECCCCEEE----EeEEECCCcEEcCCeEEECCCCceEECCC------------------CEECCCcEEecCCCCCeE
Confidence 34555555554 24678888888888888754 344443 78888888876 58
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
|++++.|+.++++.+ ..+++...++.++.+..+ ++|++++.|+++++
T Consensus 63 Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~-~~ig~~~~ig~~~~ 109 (153)
T cd04645 63 IGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDG-AVIGKGSIVAAGSL 109 (153)
T ss_pred EcCCcEECCCcEEee-eEECCCCEECCCCEEcCC-CEECCCCEECCCCE
Confidence 888888888888876 356677777777777655 44577777766654
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=6e-08 Score=96.57 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=13.5
Q ss_pred cEEcCCcEECCCCEEeeeEEeC
Q 009720 423 SIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~~i~~ 444 (527)
++||.+|+||++|.|..+..++
T Consensus 142 a~IG~~v~IG~nv~I~~g~~Ig 163 (269)
T TIGR00965 142 ATVGSCAQIGKNVHLSGGVGIG 163 (269)
T ss_pred cEECCCCEECCCCEEcCCcccC
Confidence 5666666666666665555443
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-08 Score=97.69 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=74.6
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe--------
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-------- 474 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-------- 474 (527)
++.|.+++.|.+ ++.||+++.|.++++|... +.+|.. +.||++|+|+
T Consensus 65 ~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~ 122 (246)
T PLN02472 65 DAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTG 122 (246)
T ss_pred CCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccC
Confidence 455666666653 3678888888888877654 555554 7888888884
Q ss_pred ---eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 475 ---NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 475 ---~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+++|++++.||.++.|.+ ..+++++.++.++.|..| ++|++++.|++|++|
T Consensus 123 i~~~tvIG~~v~IG~~s~L~~-~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV 176 (246)
T PLN02472 123 LPAETLIDRYVTIGAYSLLRS-CTIEPECIIGQHSILMEG-SLVETHSILEAGSVL 176 (246)
T ss_pred CCCCcEECCCCEECCCcEECC-eEEcCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 689999999999999974 568888888888888877 566888888888754
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-08 Score=91.01 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=16.0
Q ss_pred eEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 465 IGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
+.||.++.|.++.||+++.||.++.|.
T Consensus 89 ~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 89 CFIGFRSVVFNAKVGDNCVIGHNAVVD 115 (167)
T ss_pred CEECCCCEEECCEECCCCEEcCCCEEe
Confidence 555555555566666666666666663
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-08 Score=89.53 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=72.0
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-----eE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-----CI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-----~i 477 (527)
+++|.++++|. ..++||++|.|+++|.|... +.++++ +.|+++|.|.. ++
T Consensus 6 ~~~i~~~~~i~----~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~~~ 63 (154)
T cd04650 6 KAYVHPTSYVI----GDVVIGELTSVWHYAVIRGDNDSIYIGKY------------------SNVQENVSIHTDHGYPTE 63 (154)
T ss_pred CeEECCCCEEE----eeEEECCCCEEcCCeEEEcCCCcEEECCC------------------CEECCCCEEEeCCCCCeE
Confidence 45566666665 34688888888888888875 445444 88888888875 78
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
|++++.|+.++.|.+. .++++++++.++.+..+ ++|+++++|++++.
T Consensus 64 Ig~~~~I~~~~~i~~~-~Ig~~~~Ig~~~~i~~~-~~Ig~~~~vg~~~~ 110 (154)
T cd04650 64 IGDYVTIGHNAVVHGA-KVGNYVIVGMGAILLNG-AKIGDHVIIGAGAV 110 (154)
T ss_pred ECCCCEECCCcEEECc-EECCCCEEcCCCEEeCC-CEECCCCEECCCCE
Confidence 8999999998888654 67778888888777776 45677777777754
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-07 Score=95.86 Aligned_cols=215 Identities=19% Similarity=0.220 Sum_probs=127.1
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc------------C-CCEEEEEe-ccCchhH
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS------------G-INKIFVLT-QFNSASL 155 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~------------G-i~~I~Iv~-~~~~~~i 155 (527)
.++.+||||||.||||+ ...||+|+||+ |+ ||+++.++.+... + .-.++|++ .+..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 56999999999999996 57999999995 88 9999999999874 1 12455655 4677888
Q ss_pred HHHHHH-hhccCCc----ccCCCeEEEeccccCC---CCCC--CCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCc
Q 009720 156 NRHIAR-TYFGNGT----NFGDGFVEVLAATQTP---GESG--KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGD 223 (527)
Q Consensus 156 ~~hl~~-~y~~~~~----~~~~~~V~vl~~~q~~---~~~~--~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD 223 (527)
.+|+.+ .||+-.. -|.++.+..+...... .... .-.|.|.|+..+... ..++++...+.+.+.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 888853 2343211 0111112221110000 0000 012358877655443 23566666788999999999
Q ss_pred eee-cCCHHHHHHHHHHcCC-cEEEEEEEcCCCCCCCceEEE-ECCCCceEEEEecCCccccccccccccccCCCccccc
Q 009720 224 HLY-RMDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300 (527)
Q Consensus 224 ~l~-~~dl~~ll~~h~~~~a-d~tv~~~~~~~~~~~~~g~v~-~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~ 300 (527)
++. ..-=-.|+-.+.+.++ ++.--+.+... ...-|++. .|..-.|+++.|=+..... ...-++..+
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~-~~~~~~g~l-------- 329 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILN-NDELLTGEL-------- 329 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhh-cccccCCee--------
Confidence 974 3333456777777777 66544443332 13346554 4433367777775433211 000001111
Q ss_pred cCCceeeeeEEEEeHHHHHHHHH
Q 009720 301 KCPYVASMGVYVFKKDVLFKLLR 323 (527)
Q Consensus 301 ~~~~l~~~GIYif~~~iL~~ll~ 323 (527)
.-...++..++|+.++|.++.+
T Consensus 330 -~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 -AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred -cccccceEEEEEEHHHHHHHhh
Confidence 1245788999999999987654
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.6e-08 Score=79.10 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=59.7
Q ss_pred CCeeee-ceee-eeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 395 PPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 395 ~p~~i~-~~~i-~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
|++.|+ ++.| .+++|+++|.|+ ++.|.+|+|+++++|++++.|.+++++.+ +.|++++
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~ 64 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWT 64 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCc
Confidence 445553 3445 478999999997 58889999999999999999999988887 8999999
Q ss_pred EEee-eEEcCCCEECC
Q 009720 472 KIRN-CIIDKNVKIGK 486 (527)
Q Consensus 472 ~I~~-~iI~~~~~Ig~ 486 (527)
.+.+ ++|+++++|+.
T Consensus 65 ~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 65 RLENVTVLGDDVTIKD 80 (80)
T ss_pred EEecCEEECCceEECC
Confidence 9987 77777777763
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.2e-08 Score=87.14 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=19.3
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPEL 504 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~ 504 (527)
+.||+++.|. ++.|..++.||+++.|.....+.+..++++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~ 116 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYD 116 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEecc
Confidence 5555555553 455555555555555544444444433333
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.5e-08 Score=104.93 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=73.0
Q ss_pred cCCCeeeec-eee-eeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 393 FLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 393 ~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.+.+.|.+ +.| .++.|+++|.|++ +.|.+++||++|+|+++|.|.....++++ +.||+
T Consensus 271 I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~------------------~~Ig~ 332 (446)
T PRK14353 271 IGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG------------------AKVGN 332 (446)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC------------------eEEcC
Confidence 334444432 444 3466777777773 67778999999999999999743334443 89999
Q ss_pred CcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEec------CeEEEccCCEeCCCcc
Q 009720 470 NTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRS------GITIIMEKATIEDGMV 526 (527)
Q Consensus 470 ~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~------g~~vi~~~~~I~~g~v 526 (527)
++.|.+++|++++.|+.++.+.+. .++++++++.++.+.. .-++||+++.|++|++
T Consensus 333 ~~~i~~~~i~~~~~i~~~~~i~~~-~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~ 394 (446)
T PRK14353 333 FVEVKNAKLGEGAKVNHLTYIGDA-TIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSA 394 (446)
T ss_pred ceEEeceEECCCCEECCeeEEcCc-EEcCCcEECCceeeeccccccCCCcEECCCcEECCCCE
Confidence 999999999998877776666442 4555555555544311 0134455555555543
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7e-08 Score=103.52 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=62.9
Q ss_pred cCCCeeeeceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 393 ~~~p~~i~~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
+.+.+.|.++.|.+|+||++|.|+ ++.|.+|.||++|.|+. +.|.++.+....++. .+.++++ +.||.++
T Consensus 285 i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~-~~~~~~~i~~~~~i~-----d~~Ig~~---~~ig~~~ 355 (430)
T PRK14359 285 IKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKN-AKLNGVKAGHLSYLG-----DCEIDEG---TNIGAGT 355 (430)
T ss_pred ECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcc-cEecccccccccccc-----CCEECCC---CEECCCc
Confidence 345555555566788999999999 47778888888887765 334333322222111 1334444 5555555
Q ss_pred EEe--------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeE
Q 009720 472 KIR--------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT 513 (527)
Q Consensus 472 ~I~--------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~ 513 (527)
.+. .++||+++.||.++.|.... ++++++.|..|.+
T Consensus 356 ~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~------~ig~~~~i~~g~~ 399 (430)
T PRK14359 356 ITCNYDGKKKHKTIIGKNVFIGSDTQLVAPV------NIEDNVLIAAGST 399 (430)
T ss_pred eEccccCccCcCCEECCCeEEcCCCEEeCCc------EECCCCEECCCCE
Confidence 443 25777777777777776554 4555555555533
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=94.94 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=11.7
Q ss_pred cEEcCCcEECCCCEEeeeEEeC
Q 009720 423 SIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~~i~~ 444 (527)
+.||.+|.||++|.|...+.++
T Consensus 145 a~IG~~a~IG~nv~I~~gv~I~ 166 (272)
T PRK11830 145 ATVGSCAQIGKNVHLSGGVGIG 166 (272)
T ss_pred cEECCCCEECCCcEECCCccCC
Confidence 4555555555555555544444
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.6e-08 Score=82.32 Aligned_cols=67 Identities=10% Similarity=0.218 Sum_probs=51.8
Q ss_pred eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~ 483 (527)
.++|+++|.|++ +.| .+++||++|+|+. +|+++++++. +.|+++++|.+++||++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 456666666653 444 3478888888863 6788888877 7899999999999999999
Q ss_pred ECCCcEEeCC
Q 009720 484 IGKDVVIVNK 493 (527)
Q Consensus 484 Ig~~~~i~~~ 493 (527)
||+++.+.|-
T Consensus 88 ig~~~~~~~~ 97 (101)
T cd05635 88 LGAGTNNSDL 97 (101)
T ss_pred ECCCceeccc
Confidence 9999998773
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=90.59 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=14.0
Q ss_pred EECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 483 KIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 483 ~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+||.|+-|.-+.+|.-.|++++.+.+.++
T Consensus 108 ~IGdnnl~May~HVAHDC~iGn~~ilaNn 136 (260)
T COG1043 108 RIGDNNLIMAYAHVAHDCVIGNNCILANN 136 (260)
T ss_pred EECCCCEEEEeeeeeccceecCcEEEecC
Confidence 34444444444444445555555555444
|
|
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-06 Score=82.59 Aligned_cols=219 Identities=18% Similarity=0.205 Sum_probs=136.9
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
++..|||+|.|-..|. .-|-+.+++|+ |||.|+++++.+++ +++|+|-+ .++.+.+.- +.| |
T Consensus 2 ~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A-~~y-------g 64 (228)
T COG1083 2 MKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEA-KKY-------G 64 (228)
T ss_pred cceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHH-HHh-------C
Confidence 4567999999999998 45999999999 99999999999997 68887766 455555443 344 2
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCc--eeecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--HLYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD--~l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
.. +.+.-+..... + ...|-+++..+.+.+. ...+.++++.+- .+...++++..+.+.+.+.+..+.+.
T Consensus 65 ak-~~~~Rp~~LA~----D-~ast~~~~lh~le~~~----~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~ 134 (228)
T COG1083 65 AK-VFLKRPKELAS----D-RASTIDAALHALESFN----IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAV 134 (228)
T ss_pred cc-ccccCChhhcc----C-chhHHHHHHHHHHHhc----cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEe
Confidence 11 11221111110 0 0123345555555554 233446666553 45567899999999988888888888
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
+.... + |-.... ++|.+..+.|.|.... |.......|-.+..+|+++.+.|.+ +.
T Consensus 135 e~e~~-p--~k~f~~-~~~~~~~~~~~~~~~~--------------rrQ~Lpk~Y~~NgaiYi~~~~~l~e---~~---- 189 (228)
T COG1083 135 ECEHH-P--YKAFSL-NNGEVKPVNEDPDFET--------------RRQDLPKAYRENGAIYINKKDALLE---ND---- 189 (228)
T ss_pred ecccc-h--HHHHHh-cCCceeecccCCcccc--------------ccccchhhhhhcCcEEEehHHHHhh---cC----
Confidence 77642 1 211222 3477887777663221 1111113467788999999998752 11
Q ss_pred CchhhhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHHhhc
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~ll~ 373 (527)
.-|. .+...|..+.+ ..||++..||..|+..+..
T Consensus 190 ~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 190 CFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred ceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 1111 23445555543 5699999999999876653
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=93.35 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=46.8
Q ss_pred eeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCC
Q 009720 406 DAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNV 482 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~ 482 (527)
+++||++|.|++ +.|. +++||++|+|+.+|+|.+.. +.+ ...++.||+++.|. +|+|.+++
T Consensus 116 ~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~--~~~--------------~~~~v~IGd~v~IG~gsvI~~g~ 179 (231)
T TIGR03532 116 GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI--EPP--------------SAKPVVIEDNVLIGANAVILEGV 179 (231)
T ss_pred CeEECCCCEEccccccCCCcEECCCcEEcCCcEEcccc--ccc--------------cCCCeEECCCcEECCCCEEcCCC
Confidence 577788888873 5553 67777777777777776522 110 01237888877775 66777777
Q ss_pred EECCCcEEeCCC
Q 009720 483 KIGKDVVIVNKD 494 (527)
Q Consensus 483 ~Ig~~~~i~~~~ 494 (527)
+||+++.|+...
T Consensus 180 ~Ig~~~~Igags 191 (231)
T TIGR03532 180 RVGKGAVVAAGA 191 (231)
T ss_pred EECCCCEECCCC
Confidence 777777776554
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.8e-07 Score=82.08 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=12.3
Q ss_pred eEeCCCcEEeeeEEcCCCEECCCcEEeCC
Q 009720 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+.||.++.| +..||+|+.||+++++...
T Consensus 80 ~~IG~ga~I-gv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 80 CLLGANSGI-GISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred CEECCCCEE-eEEECCCCEECCCCEEeCC
Confidence 334444444 3444444444444444443
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.9e-07 Score=84.15 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=14.3
Q ss_pred eEeCCCcEE-eeeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~ 492 (527)
+.||+++.| .+|+|+.++.||++|.|..
T Consensus 133 ~~ig~~~~i~~~~~i~~~~~ig~~~~ig~ 161 (197)
T cd03360 133 CVIGDFVHIAPGVVLSGGVTIGEGAFIGA 161 (197)
T ss_pred CEECCCCEECCCCEEcCCcEECCCCEECC
Confidence 455555555 2455555555555555543
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=98.90 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=67.8
Q ss_pred CccCCCeeeeceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 391 PRFLPPTKIDNCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 391 ~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.+.+++.|. +.+.+|+||++|.|++ |.|++|+|+++|+|+++|+|.+++++.+ +.||.
T Consensus 294 ~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~-------------------~~i~~ 353 (380)
T PRK05293 294 SLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN-------------------AVIGD 353 (380)
T ss_pred CEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------------CEECC
Confidence 3455555553 2456899999999994 8999999999999999999999988877 89999
Q ss_pred CcEEee-----eEEcCCCEECCCcEEe
Q 009720 470 NTKIRN-----CIIDKNVKIGKDVVIV 491 (527)
Q Consensus 470 ~~~I~~-----~iI~~~~~Ig~~~~i~ 491 (527)
+++|.+ .+||++++|+.+++|+
T Consensus 354 ~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 354 GVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred CCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 999987 8888888888887763
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.8e-07 Score=91.19 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=6.3
Q ss_pred eEEcCCCEECCCcEE
Q 009720 476 CIIDKNVKIGKDVVI 490 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i 490 (527)
+.||+++.||.|+.|
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 334444444444444
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=96.06 Aligned_cols=62 Identities=21% Similarity=0.415 Sum_probs=53.7
Q ss_pred CCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCc
Q 009720 410 SHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 488 (527)
Q Consensus 410 ~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~ 488 (527)
.+-+.+.+ +.+.+|.|+.+|.|. | .|++|++..+ +.|+++|.|++|+|-.++.||+||
T Consensus 283 ~pPak~~~~s~v~nSLv~~GciI~-G-~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~ 341 (393)
T COG0448 283 LPPAKFVNDSEVSNSLVAGGCIIS-G-TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGA 341 (393)
T ss_pred CCCceEecCceEeeeeeeCCeEEE-e-EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCC
Confidence 34444442 456889999999998 5 8999999988 999999999999999999999999
Q ss_pred EEeC
Q 009720 489 VIVN 492 (527)
Q Consensus 489 ~i~~ 492 (527)
+|.+
T Consensus 342 ~l~~ 345 (393)
T COG0448 342 VLRR 345 (393)
T ss_pred EEEE
Confidence 9987
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-07 Score=93.49 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=44.3
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-eeeEEcCCCEE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 484 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-~~~iI~~~~~I 484 (527)
++.||+|++|... ..++||++|.||++|.|..++.+++.- +........++++ +.||.|++| .++.||++++|
T Consensus 166 ~A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g-~~~~~r~piIGd~---V~IGagA~Ilggi~IGd~a~I 239 (294)
T PLN02694 166 AAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTG-KACGDRHPKIGDG---VLIGAGATILGNVKIGEGAKI 239 (294)
T ss_pred cceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCcc-cccCCCccEECCC---eEECCeeEECCCCEECCCCEE
Confidence 4555666666521 137888888888888887777776520 0000113334444 555555555 35555555555
Q ss_pred CCCcEEe
Q 009720 485 GKDVVIV 491 (527)
Q Consensus 485 g~~~~i~ 491 (527)
|+++++.
T Consensus 240 GAgSVV~ 246 (294)
T PLN02694 240 GAGSVVL 246 (294)
T ss_pred CCCCEEC
Confidence 5555554
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.1e-07 Score=90.11 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=23.2
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
.+.||+|++|... ...+||.+|+||++|.|...+.+|+
T Consensus 147 ~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg 184 (273)
T PRK11132 147 AAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGG 184 (273)
T ss_pred cceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEec
Confidence 4566666666621 1247777777777777766555554
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-07 Score=98.91 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=76.2
Q ss_pred EECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC-------
Q 009720 408 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK------- 480 (527)
Q Consensus 408 ~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~------- 480 (527)
.+.+.+.+..+.|++|.||++|.| ++|.|++++++++ |.||+++.|.+|+|..
T Consensus 294 ~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~ 353 (429)
T PRK02862 294 RYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESS 353 (429)
T ss_pred CCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCcccccc
Confidence 344455555567778999999999 8999999988877 9999999999999965
Q ss_pred ------------CCEECCCcEEeCCCCcCCCccCCCceEEecCe-----------EEEccC-CEeCCCccC
Q 009720 481 ------------NVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----------TIIMEK-ATIEDGMVI 527 (527)
Q Consensus 481 ------------~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----------~vi~~~-~~I~~g~vi 527 (527)
++.||++|.|.++ -+++++++++++.+.++. .+|+.+ ++|+.++++
T Consensus 354 ~~~~~~~~~~~~~~~Ig~~~~i~~~-ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 354 EEREELRKEGKPPLGIGEGTTIKRA-IIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred cccccccccCCcccEECCCCEEEEE-EECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 7999999999764 577788888888885443 345555 666666553
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-07 Score=96.18 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=28.5
Q ss_pred eEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 419 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 419 ~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
.|.+|+||++|+|+.+ +|.+++++.+ +.||++|+|.+|+|++++.||.++.|.
T Consensus 291 ~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~~l~ 343 (361)
T TIGR02091 291 QVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGAVIR 343 (361)
T ss_pred EEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCCEEe
Confidence 3344555555555544 4555554444 555555555555555555555555553
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.8e-07 Score=96.06 Aligned_cols=40 Identities=18% Similarity=0.483 Sum_probs=18.8
Q ss_pred eeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEe
Q 009720 404 IKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVML 443 (527)
Q Consensus 404 i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~ 443 (527)
|.+|+|+++|.|+ +|.|.+|+|+++|.|+++++|+++++.
T Consensus 302 v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~ 342 (369)
T TIGR02092 302 VENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIID 342 (369)
T ss_pred EeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEEC
Confidence 3444444444444 244444444444444444444444443
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-07 Score=99.27 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=55.2
Q ss_pred eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcC
Q 009720 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 418 ~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
+.+.+|+||++|+| ++|.|++|+++.+ |.||++|+|++|+|+++++||+++.|.++ -+.
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~~-ii~ 381 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRRC-VID 381 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEeeE-EEC
Confidence 45678999999999 7999999988887 99999999999999999999999999753 233
Q ss_pred CCccCCCce
Q 009720 498 EADRPELGF 506 (527)
Q Consensus 498 ~~~~~~~~~ 506 (527)
+++++++++
T Consensus 382 ~~~~i~~~~ 390 (425)
T PRK00725 382 RGCVIPEGM 390 (425)
T ss_pred CCCEECCCC
Confidence 444444333
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-07 Score=87.67 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=32.2
Q ss_pred eEeCCCcEEe-----eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 465 IGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 465 ~~Ig~~~~I~-----~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.||++|.|+ +|+|++++.||.++++.+. .+++++.++.++.|..| ++||+++.|++|++
T Consensus 56 ~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~-vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~ 120 (196)
T PRK13627 56 ANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGC-VIGRDALVGMNSVIMDG-AVIGEESIVAAMSF 120 (196)
T ss_pred CEECCCCEEeCCCCCCCEECCCCEECCCcEEeeE-EECCCCEECcCCccCCC-cEECCCCEEcCCCE
Confidence 5555555553 3555666666655555443 25555555555555555 33455555555554
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-06 Score=75.69 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=41.8
Q ss_pred cEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccC
Q 009720 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRP 502 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~ 502 (527)
+.||+++.|+++|.|++.+.++.+ +.||. .|.+|+|.+++.|+.++.|.+
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i~~~~~lg~---------- 79 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNKQHDGFLGH---------- 79 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEecCcCEEee----------
Confidence 677777777777777654444443 55543 455677777666666666643
Q ss_pred CCceEEecCeEEEccCCEeCCCcc
Q 009720 503 ELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 503 ~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
++|+.++.|+++++
T Consensus 80 ----------siIg~~v~ig~~~~ 93 (101)
T cd05635 80 ----------SYLGSWCNLGAGTN 93 (101)
T ss_pred ----------eEECCCCEECCCce
Confidence 67788888888765
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-07 Score=86.07 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=16.1
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (527)
+.|+.++.|. +|.|++++.||.++++...
T Consensus 142 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~ 171 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEGVFIGAGATIIQG 171 (201)
T ss_pred CEECCCCEEeCCcEECCCCEECCCCEEeCC
Confidence 4555555554 4556666666665555543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.1e-07 Score=88.78 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=9.6
Q ss_pred eEEecCC--HHHHHHHHHHhhc
Q 009720 354 YWEDIGT--IKSFYEANMALTK 373 (527)
Q Consensus 354 ~w~dIgt--~~d~~~An~~ll~ 373 (527)
.|..-|- ++.|......+..
T Consensus 109 ~Wt~~Gp~~l~~f~~~~~~~~~ 130 (319)
T TIGR03535 109 VWTNHGPCAVDDFELTRARLRA 130 (319)
T ss_pred hhhcCCCcchhhhhhhhHHHhc
Confidence 3655554 5555444444433
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.8e-07 Score=95.55 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=47.2
Q ss_pred CCccCCCeeeeceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 390 ~~~~~~p~~i~~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
.+.+.+++.|.+++|.+|+|+++|.|+ ++.|++|+|+++|+|+++|+|.+++++.+
T Consensus 315 ~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~ 371 (407)
T PRK00844 315 DSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN 371 (407)
T ss_pred eCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Confidence 355667788877888889999999998 58889999999999999999998877766
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.1e-07 Score=82.90 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=17.9
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~ 444 (527)
++.||++++|+.. ..++||++|.||++|.|...+.++
T Consensus 67 ~~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig 103 (162)
T TIGR01172 67 GARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLG 103 (162)
T ss_pred CCEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEEC
Confidence 3445555555421 124555555555555555444444
|
Cysteine biosynthesis |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=81.41 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=50.1
Q ss_pred eeEECCCCEEcceeEeecEEcC---CcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGE---RSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~---~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~ 481 (527)
+..|+++|+|++. ++|.. .++||++|.|.+.+.+.+..+.... ..+ ..|+.||+++.|. +|++ .+
T Consensus 21 ~I~ig~~~~I~~~----~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~---~~~---~~~v~Ig~~~~Ig~~~~i-~~ 89 (161)
T cd03359 21 NIVLNGKTIIQSD----VIIRGDLATVSIGRYCILSEGCVIRPPFKKFSK---GVA---FFPLHIGDYVFIGENCVV-NA 89 (161)
T ss_pred CEEECCceEEcCC----CEEeCCCcceEECCCcEECCCCEEeCCccccCC---Ccc---ccCeEECCccEECCCCEE-Ee
Confidence 4556666666642 23332 2567777777655555442110000 000 0124455554443 2222 23
Q ss_pred CEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 482 VKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 482 ~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.|++++.|.....++++..+++++.|..| ++|.+++.|+++++
T Consensus 90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g-~~V~~~~~i~~~~v 133 (161)
T cd03359 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDG-TVVPPDTVIPPYSV 133 (161)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCcEECCC-CEECCCCEeCCCCE
Confidence 445555555544444455555555555554 33455555555544
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-06 Score=82.30 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=22.3
Q ss_pred eEECCCCEEcc-eeE---eecEEcCCcEECCCCEEee
Q 009720 407 AIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKD 439 (527)
Q Consensus 407 s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~ 439 (527)
..||++|.|++ +.| ..+.||++|.|++++.|.+
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~ 102 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITD 102 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEEC
Confidence 56666666663 444 2567888888888887765
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.9e-07 Score=95.15 Aligned_cols=76 Identities=17% Similarity=0.294 Sum_probs=42.2
Q ss_pred CEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC------------
Q 009720 413 CFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK------------ 480 (527)
Q Consensus 413 ~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~------------ 480 (527)
+.+..+.|.+|+|+++|+|+ +|.|++++++.+ +.||++|+|.+|+|..
T Consensus 306 ~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~-------------------~~Ig~~~~I~~sii~g~~~~~~~~~~~~ 365 (436)
T PLN02241 306 SKIEDCRITDSIISHGCFLR-ECKIEHSVVGLR-------------------SRIGEGVEIEDTVMMGADYYETEEEIAS 365 (436)
T ss_pred cEecCCeEEEeEEcCCcEEc-CeEEEeeEEcCC-------------------CEECCCCEEEEeEEECCCcccccccccc
Confidence 33333444456666666666 666666655554 6666666666666633
Q ss_pred ----C---CEECCCcEEeCCCCcCCCccCCCceEEe
Q 009720 481 ----N---VKIGKDVVIVNKDDVQEADRPELGFYIR 509 (527)
Q Consensus 481 ----~---~~Ig~~~~i~~~~~v~~~~~~~~~~~i~ 509 (527)
+ ++||++++|.+. .+.+++.+++++.|.
T Consensus 366 ~~~~~~~~~~Ig~~~~i~~~-vI~~~v~Ig~~~~i~ 400 (436)
T PLN02241 366 LLAEGKVPIGIGENTKIRNA-IIDKNARIGKNVVII 400 (436)
T ss_pred ccccCCcceEECCCCEEcce-EecCCCEECCCcEEe
Confidence 1 256666666543 255555555555553
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=82.75 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=40.8
Q ss_pred eEECCCCEEcc-eeE---eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCC
Q 009720 407 AIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (527)
Q Consensus 407 s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~ 481 (527)
..||++|.|++ +.| ..++||++|.|+++|.|.... +++... ...+.. -|+.||+++.|. +|+|..+
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~---h~~~~~---~~~~~~---~~i~Igd~~~Ig~~a~I~~G 142 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGS---HDYSDP---HFDLNT---APIVIGEGCWLAADVFVAPG 142 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEECCC---CCCcCC---Cccccc---CCEEEcCCcEEcCCCEEcCC
Confidence 44555555553 333 246788888888888775321 111100 011111 236677766663 5666666
Q ss_pred CEECCCcEEeCC
Q 009720 482 VKIGKDVVIVNK 493 (527)
Q Consensus 482 ~~Ig~~~~i~~~ 493 (527)
++||+++.|+..
T Consensus 143 v~Ig~~~vIga~ 154 (182)
T PRK10502 143 VTIGSGAVVGAR 154 (182)
T ss_pred CEECCCCEECCC
Confidence 666666666543
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=69.21 Aligned_cols=34 Identities=12% Similarity=0.350 Sum_probs=22.4
Q ss_pred EECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeE
Q 009720 408 IISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTV 441 (527)
Q Consensus 408 ~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~ 441 (527)
.|+++|.|++ +.|. +++||++|.|+++|.|.+..
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ 37 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAAT 37 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEecc
Confidence 4555555553 3343 37888888888888887764
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=75.93 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=42.6
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEc-------
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID------- 479 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~------- 479 (527)
+.|+++++|++ +++||++|.|++++.|.+...++.+ +.|+.++.+.++++.
T Consensus 5 ~~I~~~~~i~~----~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ 62 (119)
T cd03358 5 CIIGTNVFIEN----DVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYRK 62 (119)
T ss_pred CEECCCcEECC----CcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCccccccc
Confidence 44444444442 4677777888777777544444443 666666666654433
Q ss_pred ---CCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 480 ---KNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 480 ---~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
.++.||+++.|.+...+.+...++++..|
T Consensus 63 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i 94 (119)
T cd03358 63 WELKGTTVKRGASIGANATILPGVTIGEYALV 94 (119)
T ss_pred cccCCcEECCCcEECcCCEEeCCcEECCCCEE
Confidence 33445555555554434333333333333
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=68.49 Aligned_cols=52 Identities=27% Similarity=0.528 Sum_probs=31.3
Q ss_pred cEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee---------eEEcCCCEECCCcEEeC
Q 009720 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~~ 492 (527)
+.||+++.|++++.|.+.+.++.+ +.|++++.|.+ +.|++++.|+.++.+..
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~ 61 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeC
Confidence 356667777777777664555544 66777666664 45555555555555543
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-06 Score=90.11 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=43.2
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-eeeEEcCCCEEC
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIG 485 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-~~~iI~~~~~Ig 485 (527)
+.||.|++|... ..++||++++||++|.|..++.++....+. ......++++ +.||.|+.| .+..||+++.||
T Consensus 233 a~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~~-g~~~piIGd~---V~IGagA~IlggV~IGdga~IG 306 (360)
T PLN02357 233 AKIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQS-GDRHPKIGDG---VLIGAGTCILGNITIGEGAKIG 306 (360)
T ss_pred CEECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccccC-CccCceeCCC---eEECCceEEECCeEECCCCEEC
Confidence 444555555421 124566666666666665555555421110 1123445555 677777666 467777777777
Q ss_pred CCcEEeC
Q 009720 486 KDVVIVN 492 (527)
Q Consensus 486 ~~~~i~~ 492 (527)
+++++..
T Consensus 307 AgSVV~~ 313 (360)
T PLN02357 307 AGSVVLK 313 (360)
T ss_pred CCCEECc
Confidence 7777764
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-06 Score=81.87 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=54.3
Q ss_pred CCCCCccCCCeeeeceeeeeeEECCCCEEc-ceeE---eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCc
Q 009720 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (527)
Q Consensus 387 i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~-~~~i---~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 462 (527)
+...+.+.||..+.-. .+..||++|+|. +|.| .+..||++|.|+++|.|... ++.. . ......-..-.
T Consensus 58 ig~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~---~h~~-~--~~~r~~g~~~~ 129 (203)
T PRK09527 58 VGENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT---GHPV-H--HELRKNGEMYS 129 (203)
T ss_pred cCCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC---CCCC-C--hhhcccccccc
Confidence 3445556667665310 255666666666 3444 23689999999999988642 1110 0 00000000001
Q ss_pred cceEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcC
Q 009720 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 463 ~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
-|+.||+++.|. +|+|..+++||++++|+.+..|.
T Consensus 130 ~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 165 (203)
T PRK09527 130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT 165 (203)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 246777766663 56666666666666665554333
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=86.26 Aligned_cols=63 Identities=19% Similarity=0.357 Sum_probs=52.9
Q ss_pred cCCCCCCCCCCCccCCCeeee-------ceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEE
Q 009720 380 FYDPKTPFYTSPRFLPPTKID-------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVM 442 (527)
Q Consensus 380 ~~~~~~~i~~~~~~~~p~~i~-------~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i 442 (527)
|++|++.+++++.+.|++.|. ++++.+|+|-++|.|. +++|-||+||.+|.||.+++++..-.
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv 360 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPV 360 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccc
Confidence 677888888888877777774 3777899999999999 48899999999999999999987533
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-06 Score=73.13 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=22.3
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~ 440 (527)
++.|+++|.|.+. ..+.||++|.|+++|.|.++
T Consensus 7 ~~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 7 NVYIGPGCVISAG--GGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred CcEECCCCEEecC--CceEECCCCEECCCCEEECC
Confidence 4444555544421 25889999999999999876
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-06 Score=89.15 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=51.3
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-----eeEEcC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----NCIIDK 480 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-----~~iI~~ 480 (527)
.+.|+++|.|. +|+|+..|.||++|+|++++++++ +.||++|+|. +|+|++
T Consensus 254 ~~~i~~~~~i~-----~~~i~~~~~Ig~~~~I~~~~i~~~-------------------~~Ig~~~~i~~~~i~~s~i~~ 309 (353)
T TIGR01208 254 RVVVGEGAKIV-----NSVIRGPAVIGEDCIIENSYIGPY-------------------TSIGEGVVIRDAEVEHSIVLD 309 (353)
T ss_pred CEEECCCCEEe-----CCEEECCcEECCCCEEcCcEECCC-------------------CEECCCCEEeeeEEEeeEEcC
Confidence 34555555553 466767777777777777776665 5666666655 455555
Q ss_pred CCEECCCc-EEeCCCCcCCCccCCCceEEecC-eEEEccCCEeC
Q 009720 481 NVKIGKDV-VIVNKDDVQEADRPELGFYIRSG-ITIIMEKATIE 522 (527)
Q Consensus 481 ~~~Ig~~~-~i~~~~~v~~~~~~~~~~~i~~g-~~vi~~~~~I~ 522 (527)
+++|+.+. .+.+ ..++++++++++..+.+. ..++|.+++|+
T Consensus 310 ~~~i~~~~~~~~~-~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 310 ESVIEGVQARIVD-SVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred CCEEcCCcceeec-CEEcCCCEECCCcccccccceEEcCCceec
Confidence 55555442 3332 234455555555555321 23456666553
|
Alternate name: dTDP-D-glucose synthase |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-06 Score=79.08 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=29.3
Q ss_pred CCccCCCeeeec--eeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 390 SPRFLPPTKIDN--CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 390 ~~~~~~p~~i~~--~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
.|.+.+++.|++ ..|.|..|++++.|.+ +.++--. ..-+||++|-|++.+++..
T Consensus 11 ~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~ 67 (176)
T COG0663 11 SPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHA 67 (176)
T ss_pred CCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEec
Confidence 455666666654 2335666666666664 2222222 4556666666666666554
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-05 Score=82.76 Aligned_cols=215 Identities=20% Similarity=0.330 Sum_probs=126.9
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHH----cCCC-EEEEEeccC-chhHHHHHHHhhcc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQFN-SASLNRHIARTYFG 165 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~----~Gi~-~I~Iv~~~~-~~~i~~hl~~~y~~ 165 (527)
.+++.+|+||||.||||+ ..-||.|+||.....+++..++++.. .|.+ ..+|.+.++ .++..+++.+ |++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg 129 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFG 129 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCG
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcC
Confidence 578899999999999997 56899999996544899998888765 2433 567777764 5678888865 866
Q ss_pred CCcc---cCCCeEEEeccccC-C-CC------CCCCc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeecCCHH
Q 009720 166 NGTN---FGDGFVEVLAATQT-P-GE------SGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYM 231 (527)
Q Consensus 166 ~~~~---~~~~~V~vl~~~q~-~-~~------~~~~~-~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~~~dl~ 231 (527)
.... |.++.+..+..... + .. ....| |-|.|+...... ..++++...+.+.+.+.+.|.|...-=-
T Consensus 130 ~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp 209 (420)
T PF01704_consen 130 LDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP 209 (420)
T ss_dssp SSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H
T ss_pred CCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH
Confidence 4322 11222222221110 0 00 00123 347776544332 3566665678899999999997654334
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCCCceEE-EECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeE
Q 009720 232 DFIQSHVDRDADITISCAAVGESRASDYGLV-KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (527)
Q Consensus 232 ~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v-~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GI 310 (527)
.++..+.+.++++.+-+.+...+. .+-|++ ..|..-++.++.+-|.... ..+.. .....+.++|-
T Consensus 210 ~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~-~~~~~------------~~~~~~FntnN 275 (420)
T PF01704_consen 210 VFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHM-AEFKD------------IKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGH-HHHTS------------TTTSBEEEEEE
T ss_pred HHHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHH-Hhhhc------------cccceEEEece
Confidence 578888889999988887765432 234544 4433233444444443211 01100 01224568888
Q ss_pred EEEeHHHHHHHHHh
Q 009720 311 YVFKKDVLFKLLRW 324 (527)
Q Consensus 311 Yif~~~iL~~ll~~ 324 (527)
-.|+-+.|.++++.
T Consensus 276 i~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 276 IWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEHHHHHHHHHT
T ss_pred eeEEHHHHHHHHHh
Confidence 89999999888765
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00011 Score=75.04 Aligned_cols=214 Identities=13% Similarity=0.204 Sum_probs=128.5
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc----CCC-EEEEEeccC-chhHHHHHHHhhccC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTYFGN 166 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~-~~~i~~hl~~~y~~~ 166 (527)
+++.+|+||||.||||+ ..-||.|+||....+++++.++++... |.. ..+|.|.+. .++..+++. +|-..
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~-~~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILK-KYAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHH-HcCCC
Confidence 46789999999999995 568999999953338999999998653 432 567777765 566778885 34111
Q ss_pred Cc---ccCCCeEEEeccc------cCCCCCCCCc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeecCCHHHHH
Q 009720 167 GT---NFGDGFVEVLAAT------QTPGESGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFI 234 (527)
Q Consensus 167 ~~---~~~~~~V~vl~~~------q~~~~~~~~~-~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll 234 (527)
.. .|.++.+..+... +..+.....| +-|.++...... ..++++...+.+.+.+.+.|++...-=-.|+
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 11 1111111111100 0000011122 356766544332 2355555677899999999997642224578
Q ss_pred HHHHHcCCcEEEEEEEcCCCCCCCceE-EEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEE
Q 009720 235 QSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313 (527)
Q Consensus 235 ~~h~~~~ad~tv~~~~~~~~~~~~~g~-v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif 313 (527)
-.|.++++++++=+.+...+. .+-|. +..|..-+|.++.|-|.....+ .. + ...-.+.+++.+.|
T Consensus 158 g~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~-~~-~-----------~~~~~~~nt~n~~~ 223 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDE-FK-S-----------IKKFKIFNTNNLWV 223 (300)
T ss_pred HHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHh-hc-C-----------cccceEEEEeEEEE
Confidence 888899999887666554432 23454 4445444577777766543210 00 0 01124678999999
Q ss_pred eHHHHHHHHHh
Q 009720 314 KKDVLFKLLRW 324 (527)
Q Consensus 314 ~~~iL~~ll~~ 324 (527)
+-+.|.++++.
T Consensus 224 ~l~~L~~~~~~ 234 (300)
T cd00897 224 NLKAVKRVVEE 234 (300)
T ss_pred EHHHHHHHHHh
Confidence 99999877654
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.3e-06 Score=76.67 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=18.4
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEe----eeEEeCCc
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELK----DTVMLGAD 446 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~----~~~i~~~~ 446 (527)
.+.||+|++|-. +++|..+++||++|.|. ..+..++|
T Consensus 13 ~a~IG~GtvI~~----gavV~~~a~IG~~~iIn~~ig~~a~Ighd 53 (147)
T cd04649 13 GAYLAEGTTVMH----EGFVNFNAGTLGNCMVEGRISSGVIVGKG 53 (147)
T ss_pred CCEECCCcEECC----CCEEccCCEECCCeEECCcccCCEEECCC
Confidence 344555555542 24555555555555554 44445554
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.6e-06 Score=71.23 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=34.8
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcE---EeeeEEcCCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK---IRNCIIDKNV 482 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~---I~~~iI~~~~ 482 (527)
++.|+++++|... .+++||+++.|+++|.|... +.|++++. +..++|++++
T Consensus 8 ~~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~~------------------------~~i~~~~~~~~~~~~~Ig~~~ 61 (101)
T cd03354 8 GAKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQG------------------------VTLGGKGKGGGKRHPTIGDNV 61 (101)
T ss_pred CCEECCCEEECCC--CeEEECCCCEECCCCEEcCC------------------------CEECCCccCCcCCCCEECCCc
Confidence 3444455555421 23566666777766665433 44444443 4566777777
Q ss_pred EECCCcEEeCC
Q 009720 483 KIGKDVVIVNK 493 (527)
Q Consensus 483 ~Ig~~~~i~~~ 493 (527)
.|+.++.+.+.
T Consensus 62 ~Ig~~~~i~~~ 72 (101)
T cd03354 62 VIGAGAKILGN 72 (101)
T ss_pred EEcCCCEEECc
Confidence 77777766554
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-06 Score=81.54 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=5.1
Q ss_pred CccCCCeee
Q 009720 391 PRFLPPTKI 399 (527)
Q Consensus 391 ~~~~~p~~i 399 (527)
.|+.|++.|
T Consensus 109 ~RI~p~a~V 117 (271)
T COG2171 109 VRIVPGAIV 117 (271)
T ss_pred eeecCccEE
Confidence 555555555
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.5e-06 Score=82.72 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=6.5
Q ss_pred cEEcCCcEECCCCEE
Q 009720 423 SIVGERSRLDYGVEL 437 (527)
Q Consensus 423 svIg~~~~I~~~~~I 437 (527)
++||.+|.||.+|.|
T Consensus 225 avIGhds~IG~gasI 239 (341)
T TIGR03536 225 VMVGKGSDLGGGCST 239 (341)
T ss_pred CEECCCCEECCCCEE
Confidence 344444444444444
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.1e-05 Score=80.17 Aligned_cols=213 Identities=16% Similarity=0.227 Sum_probs=127.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc--------------CC-CEEEEEeccC-c
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GI-NKIFVLTQFN-S 152 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~--------------Gi-~~I~Iv~~~~-~ 152 (527)
..++.+|+||||.||||+ ...||.|++|+ ++ .|++...+.+... +. =..+|.|.+. .
T Consensus 114 ~gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred cCCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 467889999999999997 56899999885 77 8999999886432 11 1457788764 5
Q ss_pred hhHHHHHHH-hhccCCcccCCCeEEEeccccC-----CC-----C--CCCCcccChHHHHHHHHH--HHHhhhcCCCCeE
Q 009720 153 ASLNRHIAR-TYFGNGTNFGDGFVEVLAATQT-----PG-----E--SGKNWFQGTADAVRQFTW--VFEDAKNRNIENV 217 (527)
Q Consensus 153 ~~i~~hl~~-~y~~~~~~~~~~~V~vl~~~q~-----~~-----~--~~~~~~~Gta~al~~a~~--~l~~~~~~~~e~~ 217 (527)
+...+++.+ .||+... ..|.+...... .+ + .-.-.|.|.|+....... .++++...+.+.+
T Consensus 190 ~~T~~ff~~~~~FGl~~----~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi 265 (493)
T PLN02435 190 EATRKFFESHKYFGLEA----DQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYV 265 (493)
T ss_pred HHHHHHHHhCCCCCCCc----cceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEE
Confidence 667788863 4455321 11222211000 00 0 001123588776554432 4666666788999
Q ss_pred EEEcCcee-ecCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEE-CCCCc--eEEEEecCCccccccccccccccC
Q 009720 218 AILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGR--IAQFAEKPSGANLKAMQVDTSLLG 293 (527)
Q Consensus 218 Lvl~gD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~-D~~g~--V~~~~EKp~~~~~~~~~v~~~~~~ 293 (527)
.+.+.|++ ...---.|+-.+...+.++.+-+.+...+. ..-|++.. +.+|+ |.++.|-+..... +..-++..|
T Consensus 266 ~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~-EkvG~i~~~~~~g~~~vvEYsEl~~~~~~-~~~~~~g~L- 342 (493)
T PLN02435 266 DCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ-EKVGVFVRRGKGGPLTVVEYSELDQAMAS-AINQQTGRL- 342 (493)
T ss_pred EEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCC-CceeEEEEecCCCCEEEEEeccCCHHHHh-ccCcccccc-
Confidence 99999995 443335677888888999887666543321 23465543 34555 5555554332110 000011111
Q ss_pred CCccccccCCceeeeeEEEEeHHHHHHHHH
Q 009720 294 FSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (527)
Q Consensus 294 ~~~~~~~~~~~l~~~GIYif~~~iL~~ll~ 323 (527)
.-...+++.++|+.++|.++.+
T Consensus 343 --------~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 --------RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred --------ccchhhHHHhhccHHHHHHHHH
Confidence 1256788999999999987753
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.5e-05 Score=76.20 Aligned_cols=216 Identities=13% Similarity=0.156 Sum_probs=125.1
Q ss_pred EEEEEeCCCCCccccCccCCCccceee---CCcchhHHHHHHHHHHcC--------C-CEEEEEeccC-chhHHHHHHH-
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINSG--------I-NKIFVLTQFN-SASLNRHIAR- 161 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~~G--------i-~~I~Iv~~~~-~~~i~~hl~~- 161 (527)
.+|+||||.||||+ ..-||.++|| .|+ +++++.++++.... . =..+|.|.+. .++..+++.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 57999999999997 5789999999 488 89999999886632 1 2467888764 5667777753
Q ss_pred hhccCCcc----cCCCeEEEeccccCCC----C-C--CCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-c
Q 009720 162 TYFGNGTN----FGDGFVEVLAATQTPG----E-S--GKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-R 227 (527)
Q Consensus 162 ~y~~~~~~----~~~~~V~vl~~~q~~~----~-~--~~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~-~ 227 (527)
.||+.... |.+..+..+...+..- + + ....+-|.++...... ..++++...+.+.+.+..-|... .
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 44553211 1122233332110000 0 0 0112467877554432 23555555778888888888754 4
Q ss_pred CCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEE-EC-CCCc--e--EEEEecCCcccc---ccccccccccCCCccc
Q 009720 228 MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-ID-NMGR--I--AQFAEKPSGANL---KAMQVDTSLLGFSPQE 298 (527)
Q Consensus 228 ~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~D-~~g~--V--~~~~EKp~~~~~---~~~~v~~~~~~~~~~~ 298 (527)
.-.--|+-.+..+++++..-+.+... ...-|++. .+ .+|+ | +++.|=+..... ....++. ..+++
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~s--- 231 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGFS--- 231 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-ccccc---
Confidence 33455666677788888866655333 23466553 22 3343 3 555553321100 0011110 12232
Q ss_pred cccCCceeeeeEEEEeHHHHHHHHHhh
Q 009720 299 ARKCPYVASMGVYVFKKDVLFKLLRWR 325 (527)
Q Consensus 299 ~~~~~~l~~~GIYif~~~iL~~ll~~~ 325 (527)
.+..++++++|+-+.+.+.+++.
T Consensus 232 ----~f~gNi~~~~f~l~~~~~~l~~~ 254 (315)
T cd06424 232 ----PFPGNINQLVFSLGPYMDELEKT 254 (315)
T ss_pred ----cCCCeeeeEEEeHHHHHHHHhhc
Confidence 25689999999999888777654
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.5e-06 Score=76.87 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=22.7
Q ss_pred eeEECCCCEEcc-eeE---eecEEcCCcEECCCCEEeee
Q 009720 406 DAIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~~ 440 (527)
+..||++|+|+. +.| .+.+||+++.|+++|.|..+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~ 100 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTA 100 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeC
Confidence 345556666653 333 24688999999999888643
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=77.51 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=38.7
Q ss_pred ECCCCEEcc-eeE---eecEEcCCcEECCCCEEeee--EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe--------
Q 009720 409 ISHGCFLRE-CTV---EHSIVGERSRLDYGVELKDT--VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-------- 474 (527)
Q Consensus 409 I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-------- 474 (527)
||++++|.+ ..+ .+..||+++.|+.+|.|.+. +.+|++ +.||.++.|.
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~------------------v~Ig~~v~I~~~~h~~~~ 119 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDN------------------VLIAPNVTLSVTGHPVHH 119 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCC------------------CEECCCCEEEeCCCCCCh
Confidence 455555552 222 35677777777777777442 555554 6666666664
Q ss_pred -----------eeEEcCCCEECCCcEEeCC
Q 009720 475 -----------NCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 475 -----------~~iI~~~~~Ig~~~~i~~~ 493 (527)
.++||+++.||.+++|...
T Consensus 120 ~~r~~g~~~~~pi~IGd~v~IG~~~~I~~g 149 (203)
T PRK09527 120 ELRKNGEMYSFPITIGNNVWIGSHVVINPG 149 (203)
T ss_pred hhccccccccCCeEECCCcEECCCCEEcCC
Confidence 1456666666666666544
|
|
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00028 Score=68.27 Aligned_cols=178 Identities=22% Similarity=0.249 Sum_probs=105.1
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
.|||.|-|..+|| .-|.|.+++|+ |||+|+++.+.++ .+++|+|.|. .+++.+.+. .| + ..
T Consensus 1 iaiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~-~~-------g-~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATD--DEEIDDIAE-EY-------G-AK 62 (217)
T ss_dssp EEEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHH-HT-------T-SE
T ss_pred CEEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHH-Hc-------C-Ce
Confidence 3899999999999 45999999999 9999999999998 5799988885 455655553 33 2 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHHHHcCCc-EEEEEEEc
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDAD-ITISCAAV 251 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad-~tv~~~~~ 251 (527)
|.+...... .++.. ...+...+. ....+.++.+.||.-+ + ..+..+++.+.+...+ +.-...+.
T Consensus 63 v~~~~~~~~---------~~~~r-~~~~~~~~~---~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~ 129 (217)
T PF02348_consen 63 VIFRRGSLA---------DDTDR-FIEAIKHFL---ADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPV 129 (217)
T ss_dssp EEE--TTSS---------SHHHH-HHHHHHHHT---CSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEE
T ss_pred eEEcChhhc---------CCccc-HHHHHHHhh---hhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccc
Confidence 333332211 23433 333333332 1123478888999844 3 4578999999888776 32223332
Q ss_pred CC----CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCcccccc--CCceeeeeEEEEeHH-HHH
Q 009720 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARK--CPYVASMGVYVFKKD-VLF 319 (527)
Q Consensus 252 ~~----~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~--~~~l~~~GIYif~~~-iL~ 319 (527)
.. ... +.-....+.++....+.+.+...... .... ..++...++|.|+.. .+.
T Consensus 130 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (217)
T PF02348_consen 130 GSSVEIFNF-NPLKVLFDDDGLELYFSEHVIPYIRR--------------NPEEFKYFYIRQVGIYAFRKEMFLE 189 (217)
T ss_dssp CSHHHHTST-TSTEEEECTTSBEEEEESSESSECHH--------------HHCSSSSTEEEEEEEEEEEHHHHHH
T ss_pred cchhhcccc-cceEEEeccccchhhcccCCCccccc--------------ccccccccccccccccccccccccc
Confidence 21 111 12223445556666666655432210 0011 125678999999997 443
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-06 Score=85.53 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=15.9
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEe
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 491 (527)
|.||.|++|- ++.||+|+.||+|+++.
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEEC
Confidence 5555555553 56666666666666664
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-05 Score=90.26 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=143.4
Q ss_pred eEEEEcCceeecCC--HHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECCC--CceEEEEecCCccccccccccccc
Q 009720 216 NVAILCGDHLYRMD--YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSL 291 (527)
Q Consensus 216 ~~Lvl~gD~l~~~d--l~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~~--g~V~~~~EKp~~~~~~~~~v~~~~ 291 (527)
.+||+.||.+..++ +.+ -.++|++.+....+.+-.++.|+...|.+ +++..+..||...+..++.-
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~---- 223 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSK---- 223 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhc----
Confidence 79999999876544 222 13467777777666666789999999887 78999999998876543321
Q ss_pred cCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC------CCchhhhhHHhhh----------hcCceEEEEec-ce
Q 009720 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT------SNDFGSEIIPAAI----------MEHDVQAYIFR-DY 354 (527)
Q Consensus 292 ~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~------~~d~~~dii~~li----------~~~~V~~~~~~-g~ 354 (527)
....+.++|+|+|+.+....|++..+.. .-|+.+|++..+- +..++....+. +.
T Consensus 224 ---------~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 224 ---------THLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred ---------CCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 1346789999999999887776654321 2245566655532 22455555555 45
Q ss_pred EEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcce--eEeecEEcCCcEEC
Q 009720 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC--TVEHSIVGERSRLD 432 (527)
Q Consensus 355 w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~~--~i~~svIg~~~~I~ 432 (527)
++.+||-..|+.....+-+.. .....+.+...-..|+ +-|.||+|+.+|.+++. -|++|.||.+.+||
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~------~~~~~i~~~~~~~~~~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLV------TDQRRIMHRKVKPHPA----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHh------hhhhhhhccccCCCCc----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 889999998886544433221 0011111111111111 24568999999999963 36999999999999
Q ss_pred CCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC
Q 009720 433 YGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (527)
Q Consensus 433 ~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~ 480 (527)
++|+|.+......+ ..|.+++.|...=++.
T Consensus 365 ~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl~~ 394 (974)
T PRK13412 365 SRSIITGVPENSWN------------------LDLPEGVCIDVVPVGD 394 (974)
T ss_pred CCcEEecccccccc------------------eecCCCcEEEEEEcCC
Confidence 99999877544443 6788888887655543
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.5e-06 Score=85.65 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=65.2
Q ss_pred CCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCcc
Q 009720 387 FYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (527)
Q Consensus 387 i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~ 463 (527)
+.....+.+.+.|.+ +.| .+++||++|.|++ +.|.+|+|.++|+|+++++|.+++++.+
T Consensus 258 i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~------------------ 319 (358)
T COG1208 258 IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN------------------ 319 (358)
T ss_pred EeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC------------------
Confidence 334444455555543 444 3799999999995 7899999999999999999999999988
Q ss_pred ceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCC
Q 009720 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 499 (527)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~ 499 (527)
+.||.+. .|++ +.+|.++.+.....++..
T Consensus 320 -~~ig~~~-----~i~d-~~~g~~~~i~~g~~~~~~ 348 (358)
T COG1208 320 -CKIGASL-----IIGD-VVIGINSEILPGVVVGPG 348 (358)
T ss_pred -cEECCce-----eecc-eEecCceEEcCceEeCCC
Confidence 8999822 2777 777777777665444433
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-05 Score=83.35 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=64.6
Q ss_pred CeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECCCC---------ceEEEEecCCccccccc
Q 009720 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKAM 285 (527)
Q Consensus 215 e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~~g---------~V~~~~EKp~~~~~~~~ 285 (527)
.-++|..+|.++...-...+.. .+++++++..+.+.+-+++.|+..+|+++ .+.+|..||...+..
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~-- 128 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLIDW---DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMR-- 128 (414)
T ss_pred cceEEEecccccccCccccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHH--
Confidence 4689999995443221222221 23678888888877667899999999998 899999999876531
Q ss_pred cccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHh
Q 009720 286 QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 286 ~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~ 324 (527)
-...+. ........+|++.|+.+..+.++..
T Consensus 129 -~~~av~-------~~~~~~ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 129 -ASGAVL-------PDGNVLLDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred -hCCccc-------CCCcccccccceeccHHHHHHHHHh
Confidence 110000 1123456899999999877766543
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-05 Score=74.00 Aligned_cols=9 Identities=11% Similarity=0.541 Sum_probs=3.7
Q ss_pred cEEcCCcEE
Q 009720 423 SIVGERSRL 431 (527)
Q Consensus 423 svIg~~~~I 431 (527)
+.||++|.|
T Consensus 89 v~Ig~~~~I 97 (169)
T cd03357 89 VLIGPNVQI 97 (169)
T ss_pred CEECCCCEE
Confidence 344444444
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=74.93 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=47.4
Q ss_pred CccCCCeeeeceee-eeeEECCCCEEc-ceeEee---cEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccce
Q 009720 391 PRFLPPTKIDNCRI-KDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI 465 (527)
Q Consensus 391 ~~~~~p~~i~~~~i-~~s~I~~g~~I~-~~~i~~---svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 465 (527)
+.+.||..+. + .+..||++++|+ +|.|-+ ..||++|.|+++|.|....-- +.. .++..-. +-.-|+
T Consensus 60 ~~i~~~~~~~---~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~----~~~-~~~~~~~-~~~~~v 130 (183)
T PRK10092 60 AYIEPTFRCD---YGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHP----LDP-VARNSGA-ELGKPV 130 (183)
T ss_pred EEEeCCEEEe---ecCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCC----CCh-HHccccc-eecCCe
Confidence 3455555432 1 245556665555 233322 378888888888888643110 000 0000000 001136
Q ss_pred EeCCCcEE-eeeEEcCCCEECCCcEEeCCC
Q 009720 466 GVGRNTKI-RNCIIDKNVKIGKDVVIVNKD 494 (527)
Q Consensus 466 ~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~ 494 (527)
.||+++.| .+|+|..+++||++++|+...
T Consensus 131 ~IGd~v~IG~~a~I~~gv~IG~~~vIgags 160 (183)
T PRK10092 131 TIGNNVWIGGRAVINPGVTIGDNVVVASGA 160 (183)
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCC
Confidence 77776666 466666666666666665543
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00019 Score=76.34 Aligned_cols=212 Identities=18% Similarity=0.347 Sum_probs=129.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC-CcchhHHHHHHHHHHc----CCC-EEEEEeccCchhHHHHH-HHhhc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHI-ARTYF 164 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~~~~i~~hl-~~~y~ 164 (527)
-.++.+|.||||.||||+ ..-||.+++|. |+ ++++.+++.+..+ +++ ..+|.+..+.++-..++ ...|+
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~ 178 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF 178 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc
Confidence 577899999999999997 45899999999 77 9999999887664 443 46777888875544444 45676
Q ss_pred cC-Ccc---cCCCeEE-EeccccCC----CCCCCCcc-cChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceee-cCCHH
Q 009720 165 GN-GTN---FGDGFVE-VLAATQTP----GESGKNWF-QGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY-RMDYM 231 (527)
Q Consensus 165 ~~-~~~---~~~~~V~-vl~~~q~~----~~~~~~~~-~Gta~al~~a~~--~l~~~~~~~~e~~Lvl~gD~l~-~~dl~ 231 (527)
+. ..+ |.+..+. ++..+..+ ......|+ .|+|+-...... .++++.+.+.+.+.|.+.|.+. ..| -
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD-~ 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVD-L 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccC-H
Confidence 54 111 1111111 22111100 00101333 577654333222 5566666788999999999965 344 3
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCCCceEE-EECCCCceEEEEecCCccccccccccccccCCCccccccCCceee-ee
Q 009720 232 DFIQSHVDRDADITISCAAVGESRASDYGLV-KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MG 309 (527)
Q Consensus 232 ~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v-~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~-~G 309 (527)
.++.++...+.++++=+....... .+-|++ ..|+.-||+.+.|-|.....+ ..-+ ........+ .+
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a~-ekvG~Lv~~~g~~rllEysev~~~~~~~-~~s~----------~~~~~~n~Nni~ 325 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKAD-EKVGILVTYDGKLRLLEYSEVPNEHREE-FTSD----------GKLKYFNTNNIW 325 (472)
T ss_pred HHHHHHHhcCcceeEEEeeccccc-ccceEEEEeCCceEEEEEecCChhHhhh-hccc----------cceeeeccccce
Confidence 677888888888877665533321 345654 488888999999877642210 0000 000112344 78
Q ss_pred EEEEeHHHHHH
Q 009720 310 VYVFKKDVLFK 320 (527)
Q Consensus 310 IYif~~~iL~~ 320 (527)
+|+++.+.+.+
T Consensus 326 l~~~~~~~l~~ 336 (472)
T COG4284 326 LHLFSVKFLKE 336 (472)
T ss_pred eehhHHHHHHh
Confidence 89988887754
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0037 Score=69.79 Aligned_cols=217 Identities=14% Similarity=0.171 Sum_probs=126.7
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc-----------CC-CEEEEEeccC-chhHH
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-----------GI-NKIFVLTQFN-SASLN 156 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~-----------Gi-~~I~Iv~~~~-~~~i~ 156 (527)
.++..|+||||.||||+ ..-||.++|++ |+ ++++..++.+... +. =-.+|.|.++ .++..
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 78999999999999997 46899999983 77 8999999987654 11 2468888765 45677
Q ss_pred HHHHH-hhccCCc----ccCCCeEEEeccc-cCC--CC----CCCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcC
Q 009720 157 RHIAR-TYFGNGT----NFGDGFVEVLAAT-QTP--GE----SGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCG 222 (527)
Q Consensus 157 ~hl~~-~y~~~~~----~~~~~~V~vl~~~-q~~--~~----~~~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~g 222 (527)
+++.+ .||+... -|.++.+..+... ... .+ .-.-.+-|.++..+... ..++++...+.+.+.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 77753 3454321 1112222222211 000 00 00113457766544332 3356655678899999999
Q ss_pred ceee-cCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEE--CCCCc----eEEEEecCCccccccccccc----cc
Q 009720 223 DHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR----IAQFAEKPSGANLKAMQVDT----SL 291 (527)
Q Consensus 223 D~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~--D~~g~----V~~~~EKp~~~~~~~~~v~~----~~ 291 (527)
|+.. ..-.-.|+-.+...+.++.+-+.+... ...-|++.. ..+|+ ++++.|.+..- +..+.+. ..
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll--~~a~~p~g~l~~~ 358 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLL--RATGHPDGDVNDE 358 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHH--HhccCCCcccccc
Confidence 9833 333378888899999998887766533 234554443 23343 33444543221 1111100 01
Q ss_pred cCCCccccccCCceeeeeEEEEeHHHHHHHHHh
Q 009720 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 292 ~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~ 324 (527)
-++ ..+-.|+..-.++-+.+.+++++
T Consensus 359 ~~~-------s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 359 TGY-------SPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc-------ccCCCCceeeEeeHHHHHHHHHh
Confidence 111 12335888899998888877765
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.3e-06 Score=73.80 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=60.4
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
.++|.+||.|+ +.+.+.-||..|.|+++|.|...+-.=. +.-+-..--++++ +-|++.|++.-+.||..+.+|
T Consensus 39 KtIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~K~FS---Kg~affp~hiGdh---VFieE~cVVnAAqIgsyVh~G 111 (184)
T KOG3121|consen 39 KTIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPMKIFS---KGPAFFPVHIGDH---VFIEEECVVNAAQIGSYVHLG 111 (184)
T ss_pred cEEEeeCcEEe-cccccceEcceEEeccccccCCchHHhc---CCceeeeeeecce---EEEecceEeehhhheeeeEec
Confidence 48899999998 5667888999999999999886531000 0000000001112 677777777777788888888
Q ss_pred CCcEEeCCCCcCCCccCCCc
Q 009720 486 KDVVIVNKDDVQEADRPELG 505 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~~ 505 (527)
+|++|++...+.+.+++.++
T Consensus 112 knaviGrrCVlkdCc~ild~ 131 (184)
T KOG3121|consen 112 KNAVIGRRCVLKDCCRILDD 131 (184)
T ss_pred cceeEcCceEhhhheeccCC
Confidence 88888877666666555444
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.2e-05 Score=67.91 Aligned_cols=78 Identities=19% Similarity=0.390 Sum_probs=38.6
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCEE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~I 484 (527)
++.|+++|+|... ....||++|.|+++|.|.... +++ .. ....+... |+.||+++.|. +|+|..+++|
T Consensus 9 ~~~I~~~~~i~~~--~~i~IG~~~~I~~~~~I~~~~---h~~-~~--~~~~~~~~---~v~Ig~~~~ig~~~~i~~g~~I 77 (107)
T cd05825 9 NSWIGEGVWIYNL--APVTIGSDACISQGAYLCTGS---HDY-RS--PAFPLITA---PIVIGDGAWVAAEAFVGPGVTI 77 (107)
T ss_pred CCEECCCCEEeeC--CceEECCCCEECCCeEeecCC---CCC-Cc--CccceecC---CEEECCCCEECCCCEECCCCEE
Confidence 4555555555421 246888888888888875321 111 00 00011111 25666655553 4555555555
Q ss_pred CCCcEEeCCC
Q 009720 485 GKDVVIVNKD 494 (527)
Q Consensus 485 g~~~~i~~~~ 494 (527)
|+++.|+...
T Consensus 78 g~~~~i~~gs 87 (107)
T cd05825 78 GEGAVVGARS 87 (107)
T ss_pred CCCCEECCCC
Confidence 5555554443
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=75.06 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=21.4
Q ss_pred eEECCCCEEcc-eeE---eecEEcCCcEECCCCEEee
Q 009720 407 AIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKD 439 (527)
Q Consensus 407 s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~ 439 (527)
+.||++|.|.+ +.| .+..||++|.|+++|.|.+
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc
Confidence 34444444442 233 2578999999999998874
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=73.05 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=13.9
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
+.||.++.|. ++.||+++.||+++++..
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~ 127 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLD 127 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 4444444443 355555555555555543
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-05 Score=75.03 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=49.1
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-eeeEEcCCCEE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 484 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-~~~iI~~~~~I 484 (527)
.+.||.|.+|.-+ ...+||+-+.||++|.|..++-+|..-=+ ....+..++++ +.||.|++| .+-.||+|++|
T Consensus 73 ~A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~-~g~RhPtIg~~---V~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 73 GAKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKE-SGKRHPTIGNG---VYIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred CCeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCc-CCCCCCccCCC---eEECCCCEEEcceEECCCCEE
Confidence 3444555555421 12455556666666666555555542100 11235566677 888888887 47788999999
Q ss_pred CCCcEEeCC
Q 009720 485 GKDVVIVNK 493 (527)
Q Consensus 485 g~~~~i~~~ 493 (527)
|+|+++...
T Consensus 147 GA~sVVlkd 155 (194)
T COG1045 147 GAGSVVLKD 155 (194)
T ss_pred CCCceEccC
Confidence 999888754
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.7e-05 Score=69.24 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=17.8
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCc
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDV 496 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v 496 (527)
+.||+++.|. +|.|..+++||+++.|+.+..+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 4566655554 5555555555555555554433
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.7e-05 Score=73.73 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=32.1
Q ss_pred ccCCCeeeec-ee--e-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEe--eeEEeCCc
Q 009720 392 RFLPPTKIDN-CR--I-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELK--DTVMLGAD 446 (527)
Q Consensus 392 ~~~~p~~i~~-~~--i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~--~~~i~~~~ 446 (527)
.+.+|-.+.. .. + .++.|+.+|.+..-......||+++.|++++.|. ..+.+|++
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~ 91 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD 91 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC
Confidence 4456666642 22 2 3566777776641111246788888888888876 34555554
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.1e-05 Score=73.71 Aligned_cols=13 Identities=54% Similarity=0.649 Sum_probs=4.9
Q ss_pred EcCCCEECCCcEE
Q 009720 478 IDKNVKIGKDVVI 490 (527)
Q Consensus 478 I~~~~~Ig~~~~i 490 (527)
||+++.||.+|+|
T Consensus 132 IGd~v~IG~~a~I 144 (183)
T PRK10092 132 IGNNVWIGGRAVI 144 (183)
T ss_pred ECCCcEECCCCEE
Confidence 3333333333333
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=78.41 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=6.2
Q ss_pred ccceEeCCCcEE
Q 009720 462 KVPIGVGRNTKI 473 (527)
Q Consensus 462 ~~~~~Ig~~~~I 473 (527)
.-|+.||+||.|
T Consensus 180 a~Pv~Igdncli 191 (271)
T COG2171 180 ANPVIIGDNCLI 191 (271)
T ss_pred CCCeEECCccEe
Confidence 345566664444
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.7e-05 Score=78.94 Aligned_cols=54 Identities=11% Similarity=0.321 Sum_probs=38.7
Q ss_pred ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCC
Q 009720 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+++||++|.||.|+.|.+.+.+|++ +.||.+++|...+-...+.+|.-+++.+.
T Consensus 278 ~piIGd~V~IGagA~IlggV~IGdg------------------a~IGAgSVV~~dVP~~~~v~G~PArvv~~ 331 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGNITIGEG------------------AKIGAGSVVLKDVPPRTTAVGNPARLIGG 331 (360)
T ss_pred CceeCCCeEECCceEEECCeEECCC------------------CEECCCCEECcccCCCcEEECCCeEEEcc
Confidence 5778888888888887766666665 77888887776666666666766666654
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.2e-05 Score=76.54 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=7.3
Q ss_pred ecCCHHHHHHHHHH
Q 009720 226 YRMDYMDFIQSHVD 239 (527)
Q Consensus 226 ~~~dl~~ll~~h~~ 239 (527)
...+|.+.|.++..
T Consensus 56 ~~~~~~~al~~~l~ 69 (294)
T PLN02694 56 SHSSLERSLSFHLG 69 (294)
T ss_pred CCcCHHHHHHHHHH
Confidence 34456666655543
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.1e-05 Score=69.46 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=17.0
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
+.||.+++|. ++.||+++.||+++.+..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 5666666654 356666666666666654
|
Cysteine biosynthesis |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.9e-05 Score=74.71 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=2.2
Q ss_pred ceEeCC
Q 009720 464 PIGVGR 469 (527)
Q Consensus 464 ~~~Ig~ 469 (527)
|+.||+
T Consensus 225 pV~IGe 230 (319)
T TIGR03535 225 VISIGE 230 (319)
T ss_pred cEEECC
Confidence 333333
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.3e-05 Score=76.59 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=34.1
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCEEC
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIG 485 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~Ig 485 (527)
+.||+|++|... ..++||.+|+||++|.|...+.+|+... ..|+..+.||+++.|. ++.|-.|++||
T Consensus 212 A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~----------~~g~r~p~IGd~V~IGagA~IlG~V~IG 279 (355)
T PLN02739 212 ARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGK----------ETGDRHPKIGDGALLGACVTILGNISIG 279 (355)
T ss_pred ccccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCC----------cCCCCCcEECCCCEEcCCCEEeCCeEEC
Confidence 444555555421 1245555555555555544444443100 0011114555555553 44444455555
Q ss_pred CCcEEeCCCCc
Q 009720 486 KDVVIVNKDDV 496 (527)
Q Consensus 486 ~~~~i~~~~~v 496 (527)
++++|+.+..|
T Consensus 280 d~aiIGAGSVV 290 (355)
T PLN02739 280 AGAMVAAGSLV 290 (355)
T ss_pred CCCEECCCCEE
Confidence 55555444433
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.8e-05 Score=68.28 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.7
Q ss_pred ecEEcCCcEECCCCEEeee
Q 009720 422 HSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~~ 440 (527)
.+.||++|.|++++.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 5788999999988888665
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.2e-05 Score=81.10 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=70.1
Q ss_pred eee-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC
Q 009720 402 CRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (527)
Q Consensus 402 ~~i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~ 480 (527)
.+| .+.++.+-..+| ++|.||+++.||++|+|.+.+.+.+ +.+-.+ ..++.++-|+.|++|+
T Consensus 259 ~~i~~nvlvd~~~~iG----~~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~---~~~~~~s~i~s~ivg~ 321 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIG----ENCSIGPNVVIGPRVRIEDGVRLQD----------STILGA---DYYETHSEISSSIVGW 321 (371)
T ss_pred ccccccEeeccccccC----CccEECCCceECCCcEecCceEEEe----------eEEEcc---ceechhHHHHhhhccc
Confidence 444 444555555555 5689999999999999999998887 344444 4677777788999999
Q ss_pred CCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 481 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
|+.||.|++|.+...++++..+.+.-|+.+|
T Consensus 322 ~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 322 NVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred cccccCceEEecccEeccceEEecccccccc
Confidence 9999999999888777777666666666665
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00054 Score=64.57 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCccceeeCC--cchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcc
Q 009720 115 AATPAVPVAG--CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (527)
Q Consensus 115 ~PKpLlpIgG--k~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~ 192 (527)
.+|+|++++| + |||+|+++.+. ..+++|+|+++.. +. |. ..+ +.++.. ... .
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~-~~--------~~----~~~---~~~i~d-~~~-------g 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPG-QP--------LP----ELP---APVLRD-ELR-------G 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCC-cc--------cc----cCC---CCEecc-CCC-------C
Confidence 5899999999 9 99999999765 5689999999763 21 10 011 334432 221 1
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHHHHHHHH
Q 009720 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHVD 239 (527)
Q Consensus 193 ~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h~~ 239 (527)
+|...++..++..... ...+.++++.||+-+ ..+ +..+++.+..
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 4666666655544321 235789999999944 444 5666665433
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=74.07 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=17.5
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
|.||.|++|. ++.||+|+.||+++++..
T Consensus 200 V~IGaga~Ilggv~IG~~a~IGAgSvV~~ 228 (273)
T PRK11132 200 VMIGAGAKILGNIEVGRGAKIGAGSVVLQ 228 (273)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEECc
Confidence 6666666663 566666666666666654
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00023 Score=61.47 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=8.0
Q ss_pred eEEcCCCEECCCcEEeC
Q 009720 476 CIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (527)
++|++++.||.++.|..
T Consensus 57 v~Ig~~~~ig~~~~i~~ 73 (107)
T cd05825 57 IVIGDGAWVAAEAFVGP 73 (107)
T ss_pred EEECCCCEECCCCEECC
Confidence 44444444444444443
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00021 Score=60.98 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=40.9
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCE---EeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-eEEcCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVE---LKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKN 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~---I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-~iI~~~ 481 (527)
.++|++++.|++ ++.|+.+++|+.++. ++++++..+ +.|+.++.+.. +.|+++
T Consensus 22 ~~~ig~~~~Ig~----~~~i~~~~~i~~~~~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~ 78 (101)
T cd03354 22 GIVIGETAVIGD----NCTIYQGVTLGGKGKGGGKRHPTIGDN-------------------VVIGAGAKILGNITIGDN 78 (101)
T ss_pred eEEECCCCEECC----CCEEcCCCEECCCccCCcCCCCEECCC-------------------cEEcCCCEEECcCEECCC
Confidence 356666666663 355667777776665 334333333 77777777764 777777
Q ss_pred CEECCCcEEeC
Q 009720 482 VKIGKDVVIVN 492 (527)
Q Consensus 482 ~~Ig~~~~i~~ 492 (527)
+.|++++.|.+
T Consensus 79 ~~i~~~~~i~~ 89 (101)
T cd03354 79 VKIGANAVVTK 89 (101)
T ss_pred CEECCCCEECc
Confidence 77777777765
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=67.90 Aligned_cols=88 Identities=14% Similarity=0.255 Sum_probs=47.3
Q ss_pred CCCCCCccCCCeeee-c--eee-eeeEECCCCEEcce-eE---------eecEEcCCcEECCCCEEeeeEEeCCcccCch
Q 009720 386 PFYTSPRFLPPTKID-N--CRI-KDAIISHGCFLREC-TV---------EHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (527)
Q Consensus 386 ~i~~~~~~~~p~~i~-~--~~i-~~s~I~~g~~I~~~-~i---------~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~ 451 (527)
.|++.+.+.+...|+ . ..| ..++||++|.|..+ ++ .|=.||+++.||.|+.|=..+-.|++
T Consensus 69 eIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~----- 143 (194)
T COG1045 69 EIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDN----- 143 (194)
T ss_pred eeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCC-----
Confidence 455555566655553 1 222 23444444444411 11 34578888888888887666666655
Q ss_pred hhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 452 ~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
+.||.|+++...+=..-+.+|-=+++.
T Consensus 144 -------------akIGA~sVVlkdVP~~~tvvGvPArii 170 (194)
T COG1045 144 -------------AKIGAGSVVLKDVPPNATVVGVPARVI 170 (194)
T ss_pred -------------CEECCCceEccCCCCCceEecCcceEe
Confidence 666666666544333333334444443
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00063 Score=65.53 Aligned_cols=116 Identities=21% Similarity=0.350 Sum_probs=78.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCch--hHHHHHHHhhccCCccc
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSA--SLNRHIARTYFGNGTNF 170 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~--~i~~hl~~~y~~~~~~~ 170 (527)
++.+||-|-=.+||| .-|.|+|+++. |||+++|+++..+. +++|+|.|....+ .+..+.. . .
T Consensus 3 ~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~-~-------~ 67 (241)
T COG1861 3 MILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR-S-------H 67 (241)
T ss_pred cEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHH-H-------c
Confidence 344444454455677 45999999999 99999999999984 7999999986543 2333332 1 1
Q ss_pred CCCeEEEeccccCCCCCCCCcccChH-HHHHHHHHHHHhhhcCCCCeEEEEcCce-eecCC-HHHHHHHHHHcCCcE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTA-DAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDADI 244 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta-~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad~ 244 (527)
| +.+. +|.. +.|..+...++. -..+.++=+.||. +.+.. +...++.|.++++|.
T Consensus 68 G---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 68 G---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred C---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 2 3332 2444 566666655553 2456888899999 44555 488899999988874
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00022 Score=61.07 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=22.6
Q ss_pred eEECCCCEEcceeEeecEEcC--CcEECCCCEEeeeEEeCC
Q 009720 407 AIISHGCFLRECTVEHSIVGE--RSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~--~~~I~~~~~I~~~~i~~~ 445 (527)
..||++|+|++. +.|.. ++.||++|.|.+.+.+.+
T Consensus 2 v~Ig~~~~I~~~----~~i~~~~~v~IG~~~~Ig~~~~i~~ 38 (109)
T cd04647 2 ISIGDNVYIGPG----CVISAGGGITIGDNVLIGPNVTIYD 38 (109)
T ss_pred eEECCCcEECCC----CEEecCCceEECCCCEECCCCEEEC
Confidence 457777777743 44554 777888887766554443
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0088 Score=62.46 Aligned_cols=356 Identities=17% Similarity=0.226 Sum_probs=177.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc----CCC-EEEEEeccCchhHHHHHHHhhccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHIARTYFGN 166 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~~~~i~~hl~~~y~~~ 166 (527)
-+++..+=|-||.||-|+ -.-||.+++|-+-+..+|-++.+..+. +++ -.++...++.++--+.+.+.|.+.
T Consensus 101 L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~ 177 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS 177 (498)
T ss_pred hhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC
Confidence 466778889999999997 468999999976658888777766554 343 356666777665555555677443
Q ss_pred Cc--------ccCCCeE-EEecccc-CCCCCCCCcc-cChHHHHHHH--HHHHHhhhcCCCCeEEEEcCceee-cCCHHH
Q 009720 167 GT--------NFGDGFV-EVLAATQ-TPGESGKNWF-QGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLY-RMDYMD 232 (527)
Q Consensus 167 ~~--------~~~~~~V-~vl~~~q-~~~~~~~~~~-~Gta~al~~a--~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ 232 (527)
.. +|.+-.. +.++... ....+.+.|| -|.++-.... ...++.+...+.|.++|-+.|.+- ..|+ .
T Consensus 178 kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~ 256 (498)
T KOG2638|consen 178 KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-N 256 (498)
T ss_pred ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-H
Confidence 32 2221111 2233222 1111235677 4666543322 233454445678999999999987 3564 3
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCCce-EEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEE
Q 009720 233 FIQSHVDRDADITISCAAVGESRASDYG-LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (527)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g-~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIY 311 (527)
+++...+.+.+..|=+.+..... .+-| ++..+..-|+.++..-|.....+=+.+ +.-.+.++.--
T Consensus 257 ILn~~i~~~~ey~MEvTdKT~aD-vKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~-------------kkFkifNTNNl 322 (498)
T KOG2638|consen 257 ILNHVINNNIEYLMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSI-------------KKFKIFNTNNL 322 (498)
T ss_pred HHHHHhcCCCceEEEecccchhh-cccceEEeecCEEEEEEeccCChhHhhhhccc-------------eeEEEeccCCe
Confidence 45555666777776665433211 1233 344443334555555554321110000 00123444444
Q ss_pred EEeHHHHHHHHHhhCCCC--------Cchhhhh------HHhhhhc-CceEEEEe-cceEEecCCHHHHHHHHHHhhccC
Q 009720 312 VFKKDVLFKLLRWRYPTS--------NDFGSEI------IPAAIME-HDVQAYIF-RDYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 312 if~~~iL~~ll~~~~~~~--------~d~~~di------i~~li~~-~~V~~~~~-~g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
-++-..+++++++..-.+ -+...++ +-.+++. .+-.+..+ +.-+.-+.|-.|++-..-.+..-.
T Consensus 323 WinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld 402 (498)
T KOG2638|consen 323 WINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLD 402 (498)
T ss_pred EEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeecc
Confidence 445556666666532110 0001111 1122222 11112221 122444455555544333332111
Q ss_pred -CCCccCCCCCCCCCCCccCCCeeeec--eeeee--eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCc
Q 009720 376 -PAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (527)
Q Consensus 376 -~~~~~~~~~~~i~~~~~~~~p~~i~~--~~i~~--s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~ 450 (527)
..+.. +|.....+.|.+ +++. .+|.+ +.+-+==.| -.+.|-.|--++..|.++.++++++.-++
T Consensus 403 ~Gsl~l-~~~r~~~t~P~v----kLg~~F~kv~~f~~rfp~iP~i--leLdhLtVsGdV~FGknV~LkGtViIia~---- 471 (498)
T KOG2638|consen 403 NGSLTL-SPSRFGPTPPLV----KLGSEFKKVEDFLGRFPGIPDI--LELDHLTVSGDVWFGKNVSLKGTVIIIAN---- 471 (498)
T ss_pred CCeEEe-chhhcCCCCCee----ecchhhhHHHHHHhcCCCCCcc--ceeceEEEeccEEeccceEEeeEEEEEec----
Confidence 01110 111111111111 1111 11100 000000001 12245667778999999999999887653
Q ss_pred hhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECC
Q 009720 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (527)
Q Consensus 451 ~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (527)
+| -++.|.+|++++||+|-.|.+|-+
T Consensus 472 ---------~~-~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 472 ---------EG-DRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred ---------CC-CeeecCCCCeeecceEeccccccc
Confidence 22 237899999999999998888754
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00038 Score=79.35 Aligned_cols=75 Identities=16% Similarity=0.349 Sum_probs=42.0
Q ss_pred eeEECCCCEEcceeE-e--ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCC
Q 009720 406 DAIISHGCFLRECTV-E--HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i-~--~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~ 481 (527)
++.||++|+|+...+ + .+.||++|.|+++|.|+.... .++.+. .++ +.||++|.|. +|+|..+
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~-~~~~~~---------~~~---v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLF-EDRVMK---------SDT---VTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccc-cccccc---------cCC---eEECCCCEECCCCEECCC
Confidence 566777777764322 2 268999999999999876432 221110 011 5666655553 4555555
Q ss_pred CEECCCcEEeCC
Q 009720 482 VKIGKDVVIVNK 493 (527)
Q Consensus 482 ~~Ig~~~~i~~~ 493 (527)
++||+++.|+..
T Consensus 664 ~~IGd~a~Ig~~ 675 (695)
T TIGR02353 664 VVMGEGSVLGPD 675 (695)
T ss_pred CEECCCCEECCC
Confidence 555555555443
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00043 Score=78.92 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=47.9
Q ss_pred eeEECCCCEEcceeE---eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCC
Q 009720 406 DAIISHGCFLRECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i---~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~ 481 (527)
.+.||+||+|+...+ ....||++|.|+++|.|.+..+.+. .+. -| |+.||+||.|. +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~----------~l~-~g--~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERG----------RLH-TG--PVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCC----------cee-ec--CcEECCCcEECCCCEEcCC
Confidence 466777777765322 3456888888888888765432211 011 11 26777777773 6777677
Q ss_pred CEECCCcEEeCCCCcCC
Q 009720 482 VKIGKDVVIVNKDDVQE 498 (527)
Q Consensus 482 ~~Ig~~~~i~~~~~v~~ 498 (527)
++||++++|+....+..
T Consensus 179 ~~Igd~a~vgagS~V~~ 195 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQG 195 (695)
T ss_pred CEECCCCEECCCCEecC
Confidence 77777777766554444
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00063 Score=64.53 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=41.4
Q ss_pred eeEECCCCEEc-ceeE---eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhh-cCCccceEeCCCcEEe-eeEEc
Q 009720 406 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL-AEGKVPIGVGRNTKIR-NCIID 479 (527)
Q Consensus 406 ~s~I~~g~~I~-~~~i---~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~Ig~~~~I~-~~iI~ 479 (527)
+..||..|++. .+.+ .+..||+++.++++|.|...-.... .+..... ....-|+.||+++.|. +++|-
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~------~~~~~~~~~~~~~~v~IG~~vwIG~~a~Il 140 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGD------FVTANIGALVGAGPVTIGEDVWIGAGAVIL 140 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCC------hhhcccCCceecCCeEECCCeEEcCccEEC
Confidence 45566666666 2332 3456788888888877765411111 0000000 2223346666655553 55555
Q ss_pred CCCEECCCcEEeCC
Q 009720 480 KNVKIGKDVVIVNK 493 (527)
Q Consensus 480 ~~~~Ig~~~~i~~~ 493 (527)
++++||.+++|+..
T Consensus 141 pGV~IG~gavigag 154 (190)
T COG0110 141 PGVTIGEGAVIGAG 154 (190)
T ss_pred CCEEECCCcEEeeC
Confidence 55555555555544
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00097 Score=64.37 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=50.2
Q ss_pred cCCCeeeeceee---eeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 393 FLPPTKIDNCRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 393 ~~~p~~i~~~~i---~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.|+|.++...| .+.+||.++.+. ..++|....+|+++.|...+.-++ +.|+.
T Consensus 6 vPp~Tr~e~~~ivv~gdViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridm 61 (277)
T COG4801 6 VPPNTRVEEAIIVVKGDVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDM 61 (277)
T ss_pred cCCCCceeeeeEEEeccEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeee
Confidence 345555544333 355666655554 457777777777777777666644 77777
Q ss_pred CcEEe-eeEEcCCCEECCCcEEeCCCCcC
Q 009720 470 NTKIR-NCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 470 ~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
.|++. |.++++++.||+++.|.+.-.+.
T Consensus 62 w~kv~gNV~ve~dayiGE~~sI~gkl~v~ 90 (277)
T COG4801 62 WCKVTGNVIVENDAYIGEFSSIKGKLTVI 90 (277)
T ss_pred eeEeeccEEEcCceEEeccceeeeeEEEe
Confidence 77774 66777777777777776654433
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00068 Score=65.15 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=9.4
Q ss_pred EEcCCCEECCCcEEeCC
Q 009720 477 IIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 477 iI~~~~~Ig~~~~i~~~ 493 (527)
.||+|+-||.+++|.++
T Consensus 202 ~Igd~vliGaGvtILgn 218 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGN 218 (269)
T ss_pred cccCCeEEccccEEeCC
Confidence 45555555555555554
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0027 Score=61.36 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=57.6
Q ss_pred eeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEc
Q 009720 402 CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (527)
Q Consensus 402 ~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~ 479 (527)
+.++-.++++...+++ ..|...+++.+++|+.||.+..+++.+.+ .+||+.+.|. .-++.
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~ 90 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVI 90 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEe
Confidence 4455556666666664 56667788899999999999999888887 8888888886 56677
Q ss_pred CCCEECCCcEEeCC
Q 009720 480 KNVKIGKDVVIVNK 493 (527)
Q Consensus 480 ~~~~Ig~~~~i~~~ 493 (527)
.+-.||++|.|.++
T Consensus 91 gdLdig~dV~Iegg 104 (277)
T COG4801 91 GDLDIGADVIIEGG 104 (277)
T ss_pred cccccccceEEecC
Confidence 77888888888765
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0014 Score=59.17 Aligned_cols=50 Identities=16% Similarity=0.342 Sum_probs=35.0
Q ss_pred CccCCCeee-eceee-eeeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEeee
Q 009720 391 PRFLPPTKI-DNCRI-KDAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 391 ~~~~~p~~i-~~~~i-~~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~~~ 440 (527)
..+.|.+.+ .++.| .|.+|++||+|++ +.+. --+||+++.|++-+.|.+.
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~ 65 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNR 65 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhh
Confidence 345555555 34555 5799999999996 3331 2578999999988888764
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0059 Score=55.91 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=3.8
Q ss_pred eEeCCCcEE
Q 009720 465 IGVGRNTKI 473 (527)
Q Consensus 465 ~~Ig~~~~I 473 (527)
+.||++|.|
T Consensus 74 ~~Ig~~~~I 82 (145)
T cd03349 74 VIIGNDVWI 82 (145)
T ss_pred cEECCCCEE
Confidence 444444444
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0018 Score=44.27 Aligned_cols=13 Identities=54% Similarity=0.754 Sum_probs=4.9
Q ss_pred EcCCCEECCCcEE
Q 009720 478 IDKNVKIGKDVVI 490 (527)
Q Consensus 478 I~~~~~Ig~~~~i 490 (527)
|++++.|++++.|
T Consensus 4 Ig~~~~i~~~~~i 16 (36)
T PF00132_consen 4 IGDNVIIGPNAVI 16 (36)
T ss_dssp EETTEEEETTEEE
T ss_pred EcCCCEECCCcEe
Confidence 3333333333333
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.012 Score=56.88 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=8.5
Q ss_pred EEcCCcEECCCCEEeeeEEeC
Q 009720 424 IVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 424 vIg~~~~I~~~~~I~~~~i~~ 444 (527)
+||+-+.||.++.|-..+-+|
T Consensus 170 vigeTAvvg~~vSilH~Vtlg 190 (269)
T KOG4750|consen 170 VIGETAVVGDNVSILHPVTLG 190 (269)
T ss_pred eecceeEeccceeeecceeec
Confidence 444444444444443333333
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.012 Score=53.13 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=16.3
Q ss_pred EECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 408 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 408 ~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
.|.+++++- .-|.|--.+.|++||+++....+-+
T Consensus 10 kIap~AvVC----vEs~irGdvti~~gcVvHP~a~~iA 43 (190)
T KOG4042|consen 10 KIAPSAVVC----VESDIRGDVTIKEGCVVHPFAVFIA 43 (190)
T ss_pred eecCceEEE----EecccccceEecCCcEecceEEEEc
Confidence 355555554 1234444455555555555444433
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.03 Score=50.30 Aligned_cols=73 Identities=8% Similarity=0.138 Sum_probs=44.5
Q ss_pred eeEECCCCEEccee--------EeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeE
Q 009720 406 DAIISHGCFLRECT--------VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~--------i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~i 477 (527)
.++++.+|.|+++- .=...||+++.|+++|++..+.|..- +.+|+ ||+
T Consensus 60 yCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsy-------------------Vh~Gk-----nav 115 (184)
T KOG3121|consen 60 YCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSY-------------------VHLGK-----NAV 115 (184)
T ss_pred eEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheee-------------------eEecc-----cee
Confidence 46666666666431 12356899999998888876655544 66676 555
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccC
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRP 502 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~ 502 (527)
||..+.+.+.++|..+..+...+.+
T Consensus 116 iGrrCVlkdCc~ild~tVlPpet~v 140 (184)
T KOG3121|consen 116 IGRRCVLKDCCRILDDTVLPPETLV 140 (184)
T ss_pred EcCceEhhhheeccCCcccCccccc
Confidence 5555555555655555444443333
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.044 Score=51.86 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=10.2
Q ss_pred eEEcCCCEECCCcEEeCC
Q 009720 476 CIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (527)
+.||++|.||.+++|..+
T Consensus 125 v~IG~~vwIG~~a~IlpG 142 (190)
T COG0110 125 VTIGEDVWIGAGAVILPG 142 (190)
T ss_pred eEECCCeEEcCccEECCC
Confidence 555555555555555544
|
|
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.022 Score=38.79 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=11.9
Q ss_pred EECCCCEEcc-eeEeecEEcCCcEECCCCEE
Q 009720 408 IISHGCFLRE-CTVEHSIVGERSRLDYGVEL 437 (527)
Q Consensus 408 ~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I 437 (527)
.||++|+|+. +.| ...||++|.|+.|+.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 4555555553 222 2455555555555544
|
... |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.61 Score=40.34 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=66.0
Q ss_pred ceeeCCcchhHHHHHHHHHHcC--CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~G--i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|..|..+++.++++.+.+.+ ..+++|+.+...+...+.+.+.. .. .. .+..+.... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~--~~---~~~~~~~~~---------~~g~~ 66 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYA-KK--DP---RVIRVINEE---------NQGLA 66 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHH-hc--CC---CeEEEEecC---------CCChH
Confidence 3566666689999999999987 78899999887777766664332 11 00 122222111 14888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHH
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSH 237 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h 237 (527)
.++..++.... .+.++++.+|.++..++ ..++..+
T Consensus 67 ~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 67 AARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHH
Confidence 88988876663 58899999999998775 4443443
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.19 Score=47.82 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHH
Q 009720 127 RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206 (527)
Q Consensus 127 pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l 206 (527)
|||+|+++.+..+++++++++++. +++.+++. .++ ++++.... .|...+++.++..+
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~--------~~~---v~~i~~~~----------~G~~~si~~al~~~ 87 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAAR--------NLG---APVLRDPG----------PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH--------hcC---CEEEecCC----------CCHHHHHHHHHHHh
Confidence 899999999999988889888874 34433331 122 44443221 28899999988766
Q ss_pred HhhhcCCCCeEEEEcCceee--cCCHHHHHHHH
Q 009720 207 EDAKNRNIENVAILCGDHLY--RMDYMDFIQSH 237 (527)
Q Consensus 207 ~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h 237 (527)
.. ..+.++++.||+-+ ...+..+++..
T Consensus 88 ~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 88 RE----PGGAVLILMADLPLLTPRELKRLLAAA 116 (195)
T ss_pred hc----cCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 41 23589999999843 45577887765
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.089 Score=35.78 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=6.7
Q ss_pred EEcCCcEECCCCEE
Q 009720 424 IVGERSRLDYGVEL 437 (527)
Q Consensus 424 vIg~~~~I~~~~~I 437 (527)
.||++|.|+.+|.|
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 56666666666654
|
... |
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.49 Score=50.81 Aligned_cols=126 Identities=23% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc----------CCC-EEEEEec-cCchhHH
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS----------GIN-KIFVLTQ-FNSASLN 156 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~----------Gi~-~I~Iv~~-~~~~~i~ 156 (527)
..++.++++|||.||||+ ..-||.+.|+| |+ .|+++..+.+... |.+ ..+|.|. ...+.-.
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~-slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~ 170 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGK-SLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATL 170 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCcccc-chhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhH
Confidence 467899999999999997 56899999998 44 5888877665431 321 2355554 3455556
Q ss_pred HHHHH-hhccCCcccCCCeEEEec-----cccCCCCCCC-------CcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCc
Q 009720 157 RHIAR-TYFGNGTNFGDGFVEVLA-----ATQTPGESGK-------NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD 223 (527)
Q Consensus 157 ~hl~~-~y~~~~~~~~~~~V~vl~-----~~q~~~~~~~-------~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD 223 (527)
+|+.. .||+-.. ..|.+.. ..+..+.-.. .-+.|.++..+.+...++|+...+...+=+.+-|
T Consensus 171 ~~f~~~~~FGl~~----~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~l~dm~~rgi~~~hiy~Vd 246 (477)
T KOG2388|consen 171 EYFESHKYFGLKP----EQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQLEDMAARGIFYDHIYCVD 246 (477)
T ss_pred hHHhhcCCCCCCh----hHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhhhhHHHhhcccEEEEEEec
Confidence 66653 4554320 0111111 1111100000 1125776666666666777766666666566666
Q ss_pred ee
Q 009720 224 HL 225 (527)
Q Consensus 224 ~l 225 (527)
.+
T Consensus 247 nv 248 (477)
T KOG2388|consen 247 NV 248 (477)
T ss_pred ce
Confidence 53
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=92.45 E-value=3.2 Score=36.67 Aligned_cols=110 Identities=12% Similarity=0.152 Sum_probs=71.5
Q ss_pred ceeeCCcchhHHHHHHHHHHc--CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~--Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
.+|.-++...|..+|+.+.+. ...+|+|+-....+...+.+ +++... ...++++...+. .|.+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~-~~~~~~-----~~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEIL-EEYAES-----DPNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHH-HHHHCC-----STTEEEEEHCCC---------SHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccc-cccccc-----cccccccccccc---------cccc
Confidence 456666656888899988776 45677777665545555445 344321 123677664443 3788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEEEE
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~~~ 249 (527)
.++..+..... .+.++++..|.++..+ +..+++.+.+.+.++.+...
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 88888877664 4799999999999877 68888888887776555443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.74 Score=49.51 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=51.5
Q ss_pred hhcCceEEEEec-ceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeee-eceeeeeeEECCCCEEcc-
Q 009720 341 IMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLRE- 417 (527)
Q Consensus 341 i~~~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i-~~~~i~~s~I~~g~~I~~- 417 (527)
+++..+....+. +.++-+||-.+|++--..- ..+.+ . ...+...+.. .+..+ .++.|.+|+|..+|.|++
T Consensus 224 Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~----~~l~~-~-~~~~~~~~~~-~~~~~~~~~~VinSil~~~~~vg~~ 296 (414)
T PF07959_consen 224 LRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD----SELGI-M-RRKFSHSPAT-TPSDSEASSCVINSILEGGVSVGPG 296 (414)
T ss_pred hhhccccccccCCceEEEecCCHHHHHhhccC----ccccc-c-eeeeeccccc-cccccCCCeeEEEeEecCCceECCC
Confidence 344455555554 5677889988766542222 11100 0 0000001110 11122 224556777777777774
Q ss_pred eeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 418 CTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 418 ~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
+.|+||.|+.+++||++|.|-+.-+...
T Consensus 297 svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 297 SVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred CEEEeeecCCCCEECCCCEEECCccccc
Confidence 5667777777777777777766544443
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=82.23 E-value=21 Score=34.17 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=64.7
Q ss_pred ceeeCCcchhHHHHHHHHHHcCC----CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccC
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi----~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (527)
++|.-+..+.+..+++.+.+... -+|+|+-+...++..+.+. .+... ...+.++.... .|
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~-~~~~~-----~~~v~~i~~~~----------~~ 68 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ-EYAAK-----DPRIRLIDNPK----------RI 68 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH-HHHhc-----CCeEEEEeCCC----------CC
Confidence 35666655677888888876643 3677776665555555553 33221 11255554221 25
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEE
Q 009720 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (527)
Q Consensus 195 ta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv 246 (527)
-+.++..+..... .+.++++.+|.+...+ +..+++.+.+.+.++..
T Consensus 69 ~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 69 QSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred chHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 5667776665443 5889999999988766 68888766655555443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=82.04 E-value=20 Score=32.68 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=64.5
Q ss_pred eeeCCcchhHHHHHHHHHHc----CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccCh
Q 009720 120 VPVAGCYRLIDIPMSNCINS----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (527)
Q Consensus 120 lpIgGk~pLId~~l~~l~~~----Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (527)
+|..+....|..+|+.+.+. ...+|+|+-+...+...+.+. .+.. ++. .+.++...+. .|-
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~~~---~~~--~~~~~~~~~n---------~G~ 67 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-ELAA---RVP--RVRVIRLSRN---------FGK 67 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HHHH---hCC--CeEEEEccCC---------CCc
Confidence 45555534566777777766 256777776554444444442 3311 111 1344443333 477
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEEE
Q 009720 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (527)
Q Consensus 196 a~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~~ 248 (527)
+.++..+..... .+.++++.+|.....+ +..+++...+.+.++.+..
T Consensus 68 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 68 GAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred cHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 888877765543 4889999999887666 6778876556666554443
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=80.93 E-value=36 Score=29.98 Aligned_cols=98 Identities=8% Similarity=0.076 Sum_probs=62.6
Q ss_pred ceeeCCcchhHHHHHHHHHHcC--CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~G--i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|.-++..++..+++.+.+.- ..+|+|+-....+...+.+.+ +.. .+.++..... .|.+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~-~~~--------~~~~~~~~~~---------~g~~ 63 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRE-LFP--------EVRLIRNGEN---------LGFG 63 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHH-hCC--------CeEEEecCCC---------cChH
Confidence 3566666578889999987763 457777776555454444532 211 2455432222 4888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHc
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDR 240 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~ 240 (527)
.++..++...+ .+.++++..|..+..+ +..+++...+.
T Consensus 64 ~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 64 AGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred HHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 88888776653 5889999999988766 57777655443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 527 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 1e-133 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 1e-45 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 2e-06 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 5e-06 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 5e-06 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 5e-06 | ||
| 1mp4_A | 292 | W224h Variant Of S. Enterica Rmla Length = 292 | 1e-05 | ||
| 1iim_A | 292 | Thymidylyltransferase Complexed With Ttp Length = 2 | 1e-05 | ||
| 1mp5_A | 292 | Y177f Variant Of S. Enterica Rmla Length = 292 | 1e-05 | ||
| 1mp3_A | 292 | L89t Variant Of S. Enterica Rmla Length = 292 | 2e-05 | ||
| 1g23_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 2e-05 | ||
| 3pkp_A | 292 | Q83s Variant Of S. Enterica Rmla With Datp Length = | 3e-05 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 5e-05 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 6e-05 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 7e-05 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 7e-05 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 8e-05 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292 | Back alignment and structure |
|
| >pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293 | Back alignment and structure |
|
| >pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 687 bits (1774), Expect = 0.0
Identities = 233/456 (51%), Positives = 326/456 (71%), Gaps = 11/456 (2%)
Query: 78 MTLAPPRLERRRVDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMS 134
M ++ + + +DP ++V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+S
Sbjct: 1 MAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVS 60
Query: 135 NCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193
NC+NS I+KI+VLTQFNSASLNRH++R Y G +GFVEVLAA Q+P +WFQ
Sbjct: 61 NCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPDWFQ 118
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
GTADAVRQ+ W+FE+ + IL GDHLYRMDY FIQ+H + DADIT++ + E
Sbjct: 119 GTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDE 175
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313
RA+ +GL+KID GRI +FAEKP G L+AM+VDT++LG + A++ P++ASMG+YV
Sbjct: 176 KRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVI 235
Query: 314 KKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372
KDV+ LLR ++P +NDFGSE+IP A + VQAY++ YWEDIGTI++FY AN+ +T
Sbjct: 236 SKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 295
Query: 373 K-ESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRL 431
K P F FYD P YT PR+LPP+K+ + + D++I GC ++ C + HS+VG RS +
Sbjct: 296 KKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCI 355
Query: 432 DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491
G ++D++++GADYY+T+++ L A+G VPIG+G+N I+ IIDKN +IG +V I+
Sbjct: 356 SEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKII 415
Query: 492 NKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
NKD+VQEA R G++I+SGI +++ A I G++I
Sbjct: 416 NKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 546 bits (1410), Expect = 0.0
Identities = 135/462 (29%), Positives = 213/462 (46%), Gaps = 69/462 (14%)
Query: 85 LERRRVDP--KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGIN 142
+ +RV P ++ A +L GG G++L LT R A PAV G R+ID +SN +NSGI
Sbjct: 1 MSEKRVQPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIR 60
Query: 143 KIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQ 201
+I V TQ+ + SL RH+ R + F + ++L A+Q E+ W++GTADAV Q
Sbjct: 61 RIGVATQYKAHSLIRHLQRGWDFFRP--ERNESFDILPASQRVSET--QWYEGTADAVYQ 116
Query: 202 FTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGL 261
+ E E + IL GDH+Y+MDY +Q HVD AD+TI C V A+ +G+
Sbjct: 117 NIDIIEPY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGV 173
Query: 262 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321
+ ++ I F EKP+ + +ASMG+YVF L +
Sbjct: 174 MHVNEKDEIIDFIEKPADPP--------------GIPGNEGFALASMGIYVFHTKFLMEA 219
Query: 322 LRWRYP---TSNDFGSEIIPAAIMEHDVQAYIFRD-----------YWEDIGTIKSFYEA 367
+R +S DFG +IIP + A+ F D YW D+GTI ++++A
Sbjct: 220 VRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQA 279
Query: 368 NMALTKESPAFHFYDPKTPFYTSPRFLPPTKI------DNCRIKDAIISHGCFLRECTVE 421
N+ LT P YD P +T PP K +++S C + +
Sbjct: 280 NIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALN 339
Query: 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN 481
S++ R + L++ V+L + + +GR+ ++ N +ID
Sbjct: 340 RSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHG 380
Query: 482 VKIGKDVVIVNKDDVQEADRPELGFYI-RSGITIIMEKATIE 522
V I + +++ +D +A R F SGI +I + +
Sbjct: 381 VVIPEGLIV-GEDPELDAKR----FRRTESGICLITQSMIDK 417
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 87/445 (19%), Positives = 145/445 (32%), Gaps = 102/445 (22%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFVLTQFNSASL 155
A IL G+G +L P+T VP+ + LI+ + GI I V+
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPILS--KPLIEYQIEYLRKCGIRDITVIVS------ 54
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ YF V +GT A+ AK +
Sbjct: 55 --SKNKEYFEKK---LKEISIVTQKDD---------IKGTGAAILS-------AKFN--D 91
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD---YGLVKIDNMGRIAQ 272
I+ GD + + IT+ A+ + S+ YG++ +DN +++
Sbjct: 92 EALIIYGDLF--------FSNEKEICNIITLKENAIIGVKVSNPKDYGVLVLDNQNNLSK 143
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR-----WR-- 325
EKP P + + G+Y D +F L R
Sbjct: 144 IIEKPEI---------------PPSN------LINAGIYKLNSD-IFTYLDKISISERGE 181
Query: 326 -YPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
T + I +H V+ + YW DIG + + N F
Sbjct: 182 LELT------DAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNL---VFSQNL 232
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV--EHSIVGERSRLDYGVELKDTVM 442
+ + I+ +DA I G ++ + S +G S L L +
Sbjct: 233 GNVEDNVKIKGKVIIE----EDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNK 288
Query: 443 LGADYYQTESEI-ASLLAEG-KVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN-KDDVQEA 499
+GA E+ S++ EG K+P + + + +I ++V G +I N + D +E
Sbjct: 289 IGAS-----VEVKESVIMEGSKIP----HLSYVGDSVIAEDVNFGAGTLIANLRFDEKEV 339
Query: 500 DRPELGFYIRSGITIIMEKATIEDG 524
G I SG A I
Sbjct: 340 KVNVKGKRISSG--RRKLGAFIGGH 362
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 39/313 (12%), Positives = 85/313 (27%), Gaps = 69/313 (22%)
Query: 70 TSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLI 129
+ H + L P + V AIIL G GT+L PLT V V LI
Sbjct: 4 SHHHHHHSSGLVP---RGSHMKEIRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLI 59
Query: 130 DIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGK 189
+ + GIN I ++ ++ + +G V
Sbjct: 60 EYQIEFLKEKGINDIIIIVG--------YLKEQFDYLKEKYGVRLVFNDKYADY------ 105
Query: 190 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249
++ K + I ++L++ + ++ + R ++
Sbjct: 106 ----NNFYSLYL-------VKEELANSYVIDADNYLFK----NMFRNDLTRSTYFSVY-- 148
Query: 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309
++ + + ++ G
Sbjct: 149 ---REDCTNEWFLVYGDDYKVQDIIVDSKAGR------------------------ILSG 181
Query: 310 VYVFKKDVLFKLLR------WRYPTSNDFGSEIIPAAIMEHDVQAYIF-RDYWEDIGTIK 362
V + K++ + + ++ I E DV + +I +++
Sbjct: 182 VSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQ 241
Query: 363 SFYEANMALTKES 375
+ + L E+
Sbjct: 242 DYRKLEEILKNEN 254
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 7e-15
Identities = 40/276 (14%), Positives = 82/276 (29%), Gaps = 71/276 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGC---YRLIDIPMSNCINSGINKIFVLTQFNSA 153
A+IL G GT+L + P V V GC R + + ++ +++ ++ +
Sbjct: 21 AVILAAGLGTRLGGVP----KPLVRVGGCEIILRTMKL-----LSPHVSEFIIVASRYA- 70
Query: 154 SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRN 213
+ D E G ++ AKN
Sbjct: 71 ----DDIDAFLK------DKGFNYKIVRHDRPEKG------NGYSLLV-------AKNHV 107
Query: 214 IENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 273
+ + GDH+Y FI+ V + I + + +++++ GR+A+
Sbjct: 108 EDRFILTMGDHVYSQQ---FIEKAVRGEGVIADREPRFVDI--GEATKIRVED-GRVAKI 161
Query: 274 AEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333
+ + G +V + F+ D
Sbjct: 162 GKDLREFDC-----------------------VDTGFFVLDDSI-FEHA----EKLRDRE 193
Query: 334 SEIIPAAIMEHDVQA-YIFRDYWEDIGTIKSFYEAN 368
+ + + Y+ + W D+ T + AN
Sbjct: 194 EIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 63/455 (13%), Positives = 120/455 (26%), Gaps = 169/455 (37%)
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFV---------------LTQFNSASLNRHIARTY-- 163
V+G RL +S + + FV T+ S+ +
Sbjct: 60 AVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 164 --FGNGTNFGDGFV----EVLAATQ-----TPGE---------SGKNWFQGTADAVRQFT 203
+ + F V L Q P + SGK W D +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYK 175
Query: 204 ----------WVFEDAKNRN-----IENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248
W+ + KN N +E + L Y++D S D ++I +
Sbjct: 176 VQCKMDFKIFWL--NLKNCNSPETVLEMLQKLL----YQIDPNW--TSRSDHSSNIKLRI 227
Query: 249 AAVGES-----RASDY--GLVKIDNM------------------GRIAQFAEKPSGANLK 283
++ ++ Y L+ + N+ R Q + S A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 284 AMQVDTSLLGFSPQEAR----KC----------------PYVASMGVYVFKKDVLFKLLR 323
+ +D + +P E + K P S+ + +D L
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDN 346
Query: 324 WRYPTSNDFGSEIIPAAI---MEHDVQAY-----IFRD-----------YWEDIGTIKSF 364
W++ + + II +++ + + +F W D+
Sbjct: 347 WKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV----IK 401
Query: 365 YEANMALTKESPAFHFY-----DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-C 418
+ + + K H Y PK I +L
Sbjct: 402 SDVMVVVNK----LHKYSLVEKQPKESTI--------------SI------PSIYLELKV 437
Query: 419 TVE-----HSIVGERSRLDYGVELKDTVMLGADYY 448
+E H + + + + D + D Y
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 30/176 (17%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+I+ GG GT++ + P + + G LID +S + S +N IF+ T N+
Sbjct: 3 ALIMAGGKGTRMGGVE----KPLIKLCG-RCLIDYVVSPLLKSKVNNIFIATSPNTPKT- 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ Y + + + T G +G + + + E
Sbjct: 57 ----KEYINSAYKDY----KNIVVIDTSG-------KGYIEDLNE-------CIGYFSEP 94
Query: 217 VAILCGD--HLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
++ D +L + A A Y ID G +
Sbjct: 95 FLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEKYPNPSIDFNGLV 150
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-05
Identities = 44/301 (14%), Positives = 80/301 (26%), Gaps = 57/301 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPA--VPVAGCYR-LIDIPMSNCINSGINKIFVLT-QFNS 152
+L G G+ R + + ++D + + I +G ++ +
Sbjct: 8 LFVLAAGMGS-------RYGSLKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFE 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVE-----VLAATQTPGESGKNWFQGTADAVRQFTWVFE 207
I Y G V + P K W GT AV
Sbjct: 61 KEFREKILTKYEGRIP---VELVFQELDRLPEGFSCPEGREKPW--GTNHAVLM------ 109
Query: 208 DAKNRNIENVAILCGDHLY----RMDYMDFIQSHVDRDADITISCAAVG----ESRASDY 259
++ E A++ D Y + + + + + VG ES
Sbjct: 110 -GRDAIREPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSR 168
Query: 260 GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319
G+ ++D + E+ G A P SM ++ F D F
Sbjct: 169 GVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAP--VSMNMWGFTPDY-F 225
Query: 320 KLLRWRYP-----TSNDFGSEI-IPAAIMEH------DVQAYIFRDYW------EDIGTI 361
+ + SE IP + + V+ W +D +
Sbjct: 226 DYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGV 285
Query: 362 K 362
Sbjct: 286 V 286
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 86/469 (18%), Positives = 150/469 (31%), Gaps = 128/469 (27%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAV--PVAGCYR-LIDIPMSNCINSGINKIFVLT 148
+ AIIL G GT+ +++ P V VAG +++ + K +
Sbjct: 9 HHSNFAIILAAGKGTR-----MKSDLPKVLHKVAG--ISMLEHVFRSVGAIQPEKTVTVV 61
Query: 149 QFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ-GTADAVRQFTWVFE 207
+ + T F TQ+ Q GT AV + E
Sbjct: 62 GHKAELV-----EEVLAGQTEF---------VTQSE--------QLGTGHAVMMTEPILE 99
Query: 208 DAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
+ ++ GD L + + + I H++ TI A YG + +
Sbjct: 100 GLS----GHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--PFGYGRIVRN 153
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
+ + + E Q D + E ++ + + G YVF + LF+ L+
Sbjct: 154 DNAEVLRIVE----------QKDA-----TDFE-KQIKEINT-GTYVFDNERLFEALK-N 195
Query: 326 YPTSNDFG----SEIIPAAIME-HDVQAYIFRDYWEDIG--TIKSFYEANMALTKESPAF 378
T+N G +++I V AY +D+ E +G + A + +
Sbjct: 196 INTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHK 255
Query: 379 H------FYDPKTPFYTSPR--------------FLPPTKID-------NCRIKDAIISH 411
H F +P+ Y TKI + D+ I
Sbjct: 256 HMVNGVSFVNPEA-TYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGA 314
Query: 412 GCFLRECTVEHSIVGER------SRLDYGVELKDTVMLGADYYQTESEI-ASLLAEG-KV 463
G + +E S V + + + L V +G ++ E+ S + E K
Sbjct: 315 GAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIG-NFV----EVKGSSIGENTKA 369
Query: 464 P----IG---VGRNTKI-----------RN---CIIDKNVKIGKDVVIV 491
IG VG N +N +I NV +G + I+
Sbjct: 370 GHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTII 418
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 467 VGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELG--FYIRSGITIIMEKATIED 523
+ N I + I +G+ +V D + + +G IR+ +I I D
Sbjct: 35 IRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTE-NVIYGDTIIGD 93
Query: 524 GMVI 527
Sbjct: 94 NFQT 97
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 527 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 100.0 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 100.0 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.98 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.98 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.97 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.97 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.97 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.97 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.95 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.95 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.94 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.94 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.92 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.91 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.9 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.89 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.88 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.87 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.87 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.84 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.84 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.84 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.81 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.81 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.81 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.8 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.79 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.79 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.77 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.73 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.72 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.72 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.7 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.7 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.67 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.67 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.62 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.62 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.61 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.59 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.56 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.54 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.45 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.45 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.45 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.44 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.42 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.41 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.38 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.34 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.31 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.28 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.28 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.27 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.27 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.27 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.26 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.25 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.25 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.24 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.22 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.21 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.21 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.2 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.2 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.2 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.2 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.2 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.17 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.16 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.16 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.15 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.15 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.15 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.15 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.13 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.13 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.12 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.12 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.11 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.09 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.09 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.08 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.08 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.08 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.06 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.06 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.06 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.05 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.04 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.03 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.03 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.01 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 98.98 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.98 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.96 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 98.94 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.94 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.93 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.92 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.91 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 98.9 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 98.85 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 98.84 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.83 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.82 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.8 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.79 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.77 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.75 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.75 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.74 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.74 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.73 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.72 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.7 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.69 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.67 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.67 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.65 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.63 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.62 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.62 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.62 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.62 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.59 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.59 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.52 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.48 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.45 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.44 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.43 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.42 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.41 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.4 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.39 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.38 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.36 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.34 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.31 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.31 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.28 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.27 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.26 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.22 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.15 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.14 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.12 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.11 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.1 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.09 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 97.98 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.85 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.81 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.7 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.7 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 97.63 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.04 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.56 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 83.77 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-60 Score=507.42 Aligned_cols=431 Identities=53% Similarity=0.996 Sum_probs=358.3
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCc-c
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGT-N 169 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~-~ 169 (527)
+|++|++||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.| +... +
T Consensus 17 ~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-~~~~~~ 95 (451)
T 1yp2_A 17 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-ASNMGG 95 (451)
T ss_dssp HHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHC-C-----
T ss_pred cccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhh-hccccc
Confidence 5678999999999999999999999999999999879999999999999999999999999999999986543 2110 0
Q ss_pred c-CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEE
Q 009720 170 F-GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 170 ~-~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~ 248 (527)
+ ..+.++++...+.+. .+.|.+||+++|+.+++++++ ...++||+++||+++..++.++++.|+++++++|+++
T Consensus 96 ~~~~~~v~i~~~~~~~~--~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~ 170 (451)
T 1yp2_A 96 YKNEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 170 (451)
T ss_dssp ---CCEEEEEESCSSTT--SCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEE
T ss_pred ccccCcEEEeccccccc--ccccccCcHHHHHHHHHHHHh---cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEE
Confidence 1 123466665444321 235778999999999988852 1247899999999999999999999999999999998
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+.+.+.+.+||++.+|++++|+.|.|||.....+.+.++.++++-.+......++++++|+|+|++++|.++++...+.
T Consensus 171 ~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 250 (451)
T 1yp2_A 171 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG 250 (451)
T ss_dssp EEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT
T ss_pred EEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhccc
Confidence 88753335689999999999999999999865433344444444332221112357899999999999987777766555
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccC-CCCccCCCCCCCCCCCccCCCeeeeceeeee
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKD 406 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~-~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~ 406 (527)
..+|..++++.++++ .++++|.++++|.|+||+++|.+|++.++++. +...++++.+++++.+.+.|+++|.++.|.+
T Consensus 251 ~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~ 330 (451)
T 1yp2_A 251 ANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD 330 (451)
T ss_dssp CCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEEE
T ss_pred ccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEEeC
Confidence 567777899998887 79999999999999999999999999999876 6777899999999999999999997789999
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECC
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (527)
++||++|+|+++.|.+++||++|.||++|+|++++++++++++...+.......|.+.+.||+++.|.+|+||+|+.||+
T Consensus 331 ~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~ 410 (451)
T 1yp2_A 331 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGD 410 (451)
T ss_dssp EEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECT
T ss_pred eEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECC
Confidence 99999999998888999999999999999999999999988888777777777777668999999999999999999999
Q ss_pred CcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 487 DVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 487 ~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+++|.+.+++.++++++++++|.+|.++||+++.||+|++|
T Consensus 411 ~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 411 NVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp TCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred CCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 99999999998888999999999998899999999999986
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-52 Score=444.07 Aligned_cols=384 Identities=33% Similarity=0.560 Sum_probs=309.4
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|++|+|||||||.||||+|||..+||||+|++|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.| +....+.
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~~~ 88 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGW-DFFRPER 88 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHS-CCCCGGG
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhh-ccccccc
Confidence 567999999999999999999999999999999978999999999999999999999999899988886433 2110011
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
...++++...+.. ....|+.||+++|+.+++++.+ ...++|++++||+++..++.++++.|+++++++|+++.+.
T Consensus 89 ~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~ 163 (420)
T 3brk_X 89 NESFDILPASQRV--SETQWYEGTADAVYQNIDIIEP---YAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEV 163 (420)
T ss_dssp TCEEEEECCC---------CCCCHHHHHHTTHHHHHH---HCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEE
T ss_pred cCCEEEeCccccc--cCCccccCCHHHHHHHHHHHHh---cCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeec
Confidence 1236666544320 0124778999999999988863 1247899999999999999999999999999999998887
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--- 328 (527)
+.+.+..||++.+|++|+|+.|.|||..... .+ ....++++++|+|+|++++|.++++...+.
T Consensus 164 ~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~--~~------------~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 229 (420)
T 3brk_X 164 PRMEATGFGVMHVNEKDEIIDFIEKPADPPG--IP------------GNEGFALASMGIYVFHTKFLMEAVRRDAADPTS 229 (420)
T ss_dssp ETTGGGGSEEEEECTTSBEEEEEESCSSCCC--BT------------TBTTEEEEEEEEEEEEHHHHHHHHTSSCCC---
T ss_pred CccccCcccEEEECCCCcEEEeEeCCCcccc--cc------------ccccceEEeeeeEEEeHHHHHHHHHHhcccCCc
Confidence 5444678999999999999999999864321 00 001247899999999999987777654331
Q ss_pred CCchhhhhHHhhhhcCceEEEEe-----------cceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCe
Q 009720 329 SNDFGSEIIPAAIMEHDVQAYIF-----------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPT 397 (527)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~~~~-----------~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~ 397 (527)
..+|..++++.+++++++++|.+ ++||.||||++||.+|++.++++.+...++.+.+++++.+.+.|++
T Consensus 230 ~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~ 309 (420)
T 3brk_X 230 SRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPA 309 (420)
T ss_dssp -------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCC
T ss_pred cccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCc
Confidence 23566789999888889999999 8899999999999999999998877777788889999999999999
Q ss_pred eee------ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 398 KID------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 398 ~i~------~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
++. ++.+.++.||++|+|.++.|.||+||++|+|+++|.|++++++.+ +.||+++
T Consensus 310 ~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~-------------------~~i~~~~ 370 (420)
T 3brk_X 310 KFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHA 370 (420)
T ss_dssp EEECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT-------------------CEECTTC
T ss_pred EEecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC-------------------CEECCCC
Confidence 996 477889999999999667999999999999999999999988887 9999999
Q ss_pred EEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEE-ecCeEEEccCC
Q 009720 472 KIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITIIMEKA 519 (527)
Q Consensus 472 ~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i-~~g~~vi~~~~ 519 (527)
.|.+|+||+++.||++++|.+.. ..+..+++| .+|+++|.+++
T Consensus 371 ~i~~~~ig~~~~i~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~ 414 (420)
T 3brk_X 371 QLSNVVIDHGVVIPEGLIVGEDP-----ELDAKRFRRTESGICLITQSM 414 (420)
T ss_dssp EEEEEEECTTCEECTTCEESSCH-----HHHHHHSEECTTSCEEECHHH
T ss_pred EEeceEECCCCEECCCCEEeCCC-----CCCCceEEEecCceEEEecch
Confidence 99999999999999999998542 122235788 68887776654
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=388.35 Aligned_cols=376 Identities=18% Similarity=0.199 Sum_probs=264.2
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
..+.+||||||+||||+|+| ||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+.+.. ..++
T Consensus 11 ~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~----~~~~- 81 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELA----DTLG- 81 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHH----HHHT-
T ss_pred CCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHH----HhcC-
Confidence 55789999999999999986 9999999999 9999999999999999999999999999999986321 0122
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
..++++. |. +++|||+||+++++++.+ ...+.+|+++||..+ . ..+.+|+++|++.++++|+++.+
T Consensus 82 ~~i~~~~--q~-------~~lGTa~Av~~a~~~l~~---~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~ 149 (501)
T 3st8_A 82 RTIDVAL--QD-------RPLGTGHAVLCGLSALPD---DYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTT 149 (501)
T ss_dssp SCCEEEE--CS-------SCCCHHHHHHHHHTTSCT---TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CcEEEEE--cC-------CCCCcHHHHHHHHHHhcc---ccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeec
Confidence 1244443 32 247999999999988853 235789999999844 3 45899999999999999999999
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC--
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-- 328 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~-- 328 (527)
+++ ++.||.+..|++|+|+.|.|||..+..+ ....++++|+|+|++++|..++......
T Consensus 150 ~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~~~-----------------~~i~~in~Giy~f~~~~l~~~l~~l~~~n~ 210 (501)
T 3st8_A 150 LDD--PFGYGRILRTQDHEVMAIVEQTDATPSQ-----------------REIREVNAGVYAFDIAALRSALSRLSSNNA 210 (501)
T ss_dssp CSC--CTTSCEEEECTTCCEEEEECGGGCCHHH-----------------HHCCEEEEEEEEEEHHHHHHHHTTCCCCST
T ss_pred cCC--chhccccccccceeEEeeccccCCChhh-----------------ccceeeeceeeeecchhHHHhhhhhccccc
Confidence 987 6789999999999999999998653211 1246899999999999998887664432
Q ss_pred -CCchhhhhHHhhhhc-CceEEEEecceEEec--CCHHHHHHHHHHhhccC-------------CCCccCCCCCCCCCCC
Q 009720 329 -SNDFGSEIIPAAIME-HDVQAYIFRDYWEDI--GTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSP 391 (527)
Q Consensus 329 -~~d~~~dii~~li~~-~~V~~~~~~g~w~dI--gt~~d~~~An~~ll~~~-------------~~~~~~~~~~~i~~~~ 391 (527)
...|.++++..+... ..+..+...++|... ++...+.++...+..+. +...+.++...+...+
T Consensus 211 ~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv 290 (501)
T 3st8_A 211 QQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDT 290 (501)
T ss_dssp TCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTC
T ss_pred ccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcc
Confidence 344677888877766 677888877776544 44444444433222111 1111222233333333
Q ss_pred ccCCCeeeec-------------eeeeee----------------EECCCCEEcc-eeE-eecEEcCCcEECCCCEEeee
Q 009720 392 RFLPPTKIDN-------------CRIKDA----------------IISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 392 ~~~~p~~i~~-------------~~i~~s----------------~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~ 440 (527)
.+.+++.+.+ +.+.++ .|+++|.|++ +.+ .+++|+++++||.+|+++++
T Consensus 291 ~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s 370 (501)
T 3st8_A 291 VIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNS 370 (501)
T ss_dssp EECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESC
T ss_pred eecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccc
Confidence 3333333321 122222 3333333432 222 23445555555555555555
Q ss_pred EEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCC-ccCCCceEEecCe-----EE
Q 009720 441 VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA-DRPELGFYIRSGI-----TI 514 (527)
Q Consensus 441 ~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~i~~g~-----~v 514 (527)
+++.+ +.|++.++|.+|+||+||.||+++++.|.+++... +.++++++|+++. +.
T Consensus 371 ~Ig~g-------------------skI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~ 431 (501)
T 3st8_A 371 TIGTG-------------------TKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVT 431 (501)
T ss_dssp EECTT-------------------CEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEE
T ss_pred eecCC-------------------cEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcE
Confidence 44444 78889999999999999999999999998887664 6777777776654 34
Q ss_pred EccCCEeCCCccC
Q 009720 515 IMEKATIEDGMVI 527 (527)
Q Consensus 515 i~~~~~I~~g~vi 527 (527)
||++|+|++|++|
T Consensus 432 Ig~~~~i~ags~v 444 (501)
T 3st8_A 432 IGDGAYTGAGTVV 444 (501)
T ss_dssp ECTTCEECTTCEE
T ss_pred ECCCCEECCCCEE
Confidence 7999999999875
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-43 Score=375.07 Aligned_cols=382 Identities=18% Similarity=0.245 Sum_probs=261.2
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
.-++||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++ .. +
T Consensus 11 ~~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~-----~~----~-- 75 (468)
T 1hm9_A 11 SNFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVL-----AG----Q-- 75 (468)
T ss_dssp CEEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSS-----SS----S--
T ss_pred CCcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHh-----CC----C--
Confidence 34799999999999985 689999999999 999999999999999999999998876664433 22 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
++++... +.+|++++|+.++.++++ ..+.||+++||+ +...++.++++.|++.++++++++.+.
T Consensus 76 -i~~v~~~---------~~~G~~~sl~~a~~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~ 141 (468)
T 1hm9_A 76 -TEFVTQS---------EQLGTGHAVMMTEPILEG----LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAET 141 (468)
T ss_dssp -SEEEECS---------SCCCHHHHHHTTHHHHTT----CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC
T ss_pred -cEEEeCC---------ccCChHHHHHHHHHHhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 3343321 236999999999988851 247899999999 556789999999999889999988887
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--- 328 (527)
++ +..|+.+..|++|+|..|.|||..... ...++++++|+|+|+++.|.++++...+.
T Consensus 142 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 202 (468)
T 1hm9_A 142 DN--PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQ 202 (468)
T ss_dssp SC--CTTSCEEEECTTCCEEEEECTTTCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTT
T ss_pred CC--CCceeEEEECCCCCEEEEEECCCCChH-----------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCC
Confidence 66 457999999999999999999752210 01247899999999999776666654332
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecceEEe--cCCHHHHHHHHHHhhccC------CCCc-------cCCCCCCCCCCCc
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRDYWED--IGTIKSFYEANMALTKES------PAFH-------FYDPKTPFYTSPR 392 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g~w~d--Igt~~d~~~An~~ll~~~------~~~~-------~~~~~~~i~~~~~ 392 (527)
...+.+++++.+++. .++++|.++++|.+ |+|++||..|+..+..+. +... ++++...+...+.
T Consensus 203 ~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~ 282 (468)
T 1hm9_A 203 GEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQ 282 (468)
T ss_dssp CSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCE
T ss_pred CeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCE
Confidence 223458899998886 68999999999977 559999999997664331 1111 1222222222222
Q ss_pred cC------------CCeeee-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-Hhh
Q 009720 393 FL------------PPTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASL 457 (527)
Q Consensus 393 ~~------------~p~~i~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~~~ 457 (527)
+. +++.|. ++.|.++.||++|.|+.+.|.+++||++|.|+++|.|...++++.+ ......++ .+.
T Consensus 283 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ 362 (468)
T 1hm9_A 283 IEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSS 362 (468)
T ss_dssp ECSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCE
T ss_pred ECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeE
Confidence 22 222221 2444556666666666556667777777777777777733333332 11111111 111
Q ss_pred hcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 458 ~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++++ +.|++.+.|.++.||+|+.||.++++.+.+ .+++++.++.++.|..| +.||++++|++|++|
T Consensus 363 Ig~~---~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~i~~~s~v 435 (468)
T 1hm9_A 363 IGEN---TKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAP-VELGDNSLVGAGSTI 435 (468)
T ss_dssp ECTT---CEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS-CEECTTCEECTTCEE
T ss_pred EcCC---cEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCC-cEECCCCEECCCCEE
Confidence 2222 233333334467888999999999988743 34455555555555555 346888888888764
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=366.47 Aligned_cols=350 Identities=20% Similarity=0.293 Sum_probs=264.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|++||||||.|+||+|||..+||+|+|++|+ |||+|++++|.++|+++|+|+++++ +.+|+.+.+ . .
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~--~-------~ 67 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKL--K-------E 67 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHC--T-------T
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccC--C-------c
Confidence 6899999999999999999999999999999 9999999999999999999999876 666664311 0 1
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--CCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
++++.... |+.|++++++.+.. .++|+++.||+++. .++.++++ .++.++++.+.+
T Consensus 68 i~~~~~~~--------~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~ 125 (401)
T 2ggo_A 68 ISIVTQKD--------DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVS 125 (401)
T ss_dssp CEEEECCT--------TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECS
T ss_pred EEEEeCCC--------CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcC
Confidence 44443221 23689988876542 37899999999886 55677765 457888888876
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-CC-
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN- 330 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~-~~- 330 (527)
+ +..|+.+..|++|++..|.|||..+ .+++.++|+|+|++++|.. ++...+. ..
T Consensus 126 ~--~~~~~~v~~~~~g~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~ 181 (401)
T 2ggo_A 126 N--PKDYGVLVLDNQNNLSKIIEKPEIP---------------------PSNLINAGIYKLNSDIFTY-LDKISISERGE 181 (401)
T ss_dssp C--CSSSCEEEECTTSSEEEEECSCSSC---------------------SCSEEEEEEEEEETHHHHH-HHHSCCCSSSC
T ss_pred C--CcceeEEEECCCCeEEEEEECCCCC---------------------CCcEEEEEEEEEcHHHHHH-hhhcCcCCCCc
Confidence 5 4578999998889999999998543 2468999999999999864 5544321 11
Q ss_pred chhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeee-------ce
Q 009720 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-------NC 402 (527)
Q Consensus 331 d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-------~~ 402 (527)
....++++.+ .. .++..+..+++|.||+||+||.+|++.++.+.... .....+++++.+.+++.|+ .+
T Consensus 182 ~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~---~~~~~i~~~~~i~~~~~ig~~~~I~~~~ 257 (401)
T 2ggo_A 182 LELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFS---QNLGNVEDNVKIKGKVIIEEDAEIKSGT 257 (401)
T ss_dssp BCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCC---EECSEECSSCEEESCEEECTTCEECTTC
T ss_pred eEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccc---cccceeCCCCEEcCCeEEcCCCEECCCC
Confidence 2245778777 54 68999999999999999999999999988664311 1123344444444444442 24
Q ss_pred ee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEc
Q 009720 403 RI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479 (527)
Q Consensus 403 ~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~ 479 (527)
.| .++.||++|.|++ +.|. +++||++|.|+++|.|++++++.+ +.||+++.|.+|+||
T Consensus 258 ~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~Ig 318 (401)
T 2ggo_A 258 YIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEG-------------------SKIPHLSYVGDSVIA 318 (401)
T ss_dssp EEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTT-------------------CEEEESCEEESCEEC
T ss_pred EEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCC-------------------cEECCCceEcceEEC
Confidence 44 3577888888874 5664 689999999999999988887776 899999999999999
Q ss_pred CCCEECCCcEEeC------------------------CCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 480 KNVKIGKDVVIVN------------------------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 480 ~~~~Ig~~~~i~~------------------------~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+++.||+++.|.+ ...+++++.++.++.|..| ++||++++|++|++|
T Consensus 319 ~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~g-v~Ig~~~vi~~gsvv 389 (401)
T 2ggo_A 319 EDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPG-VKIGAYARIYPGAVV 389 (401)
T ss_dssp TTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred CCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCC-cEECCCcEECCCCeE
Confidence 9999999999984 3345555666666666666 345888888888764
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=359.64 Aligned_cols=380 Identities=15% Similarity=0.208 Sum_probs=251.4
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
.+|.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+ .+
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~--------~~- 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLAD--------PS- 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc--------CC-
Confidence 368999999999999996 689999999999 99999999999999999999999987777665531 11
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
++++... +..|++++|+.++.+++ ..+.||+++||+ +...++.++++.|.+ .++++++.+
T Consensus 74 --~~~v~~~---------~~~g~~~~i~~~~~~~~-----~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~ 135 (459)
T 4fce_A 74 --LNWVLQA---------EQLGTGHAMQQAAPHFA-----DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVK 135 (459)
T ss_dssp ---CEEECS---------SCCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEE
T ss_pred --cEEEeCC---------CCCCcHHHHHHHHHhcC-----CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEe
Confidence 3444321 23699999999987764 247999999999 456778999998864 567888877
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~--- 327 (527)
..+ +..|+.+..| +|++..+.|||..... ...++++++|+|+|+++.|..+++...+
T Consensus 136 ~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 195 (459)
T 4fce_A 136 LDN--PSGYGRIVRE-NGDVVGIVEHKDASDA-----------------QREINEINTGILVANGRDLKRWLSLLDNNNA 195 (459)
T ss_dssp CSC--CTTSCEEEEE-TTEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHHTCCCCST
T ss_pred cCC--CCcccEEEeC-CCcEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHHhCcccc
Confidence 765 4679998887 7999999998753210 1124789999999999988777765432
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecceE--EecCCHHHHHHHHHHhhccC------CCCcc-------CCCCCCCCCCC
Q 009720 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYW--EDIGTIKSFYEANMALTKES------PAFHF-------YDPKTPFYTSP 391 (527)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~~~~~g~w--~dIgt~~d~~~An~~ll~~~------~~~~~-------~~~~~~i~~~~ 391 (527)
....+..++++.+++. .++++|.++++| .+|+||+||..|+..+..+. ....+ +++...+...+
T Consensus 196 ~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~ 275 (459)
T 4fce_A 196 QGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDI 275 (459)
T ss_dssp TCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSC
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCc
Confidence 2334567888888876 689999999866 67999999999986655332 01111 11222233333
Q ss_pred ccCCCeeee-------------ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-H
Q 009720 392 RFLPPTKID-------------NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-A 455 (527)
Q Consensus 392 ~~~~p~~i~-------------~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~ 455 (527)
.+.|.+.|. ++.|.++.||++|.|++ +.|.+++||++|.|+++|.|...+.++++ .+....++ .
T Consensus 276 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~ 355 (459)
T 4fce_A 276 TIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKK 355 (459)
T ss_dssp EECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEE
T ss_pred EECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEee
Confidence 333333331 13333455555555552 44445555555555555555422222221 11111111 1
Q ss_pred hhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCC-------cCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 456 ~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.+.++ +.|++++.|.+|+||+|+.||.++++.+.++ +++++.++.++.|..| +.||++|+|++|++|
T Consensus 356 ~~i~~~---~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~g-v~Ig~~~~igagsvV 430 (459)
T 4fce_A 356 ARLGKG---SKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVANGATIGAGTTV 430 (459)
T ss_dssp EEECTT---CEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS-EEECTTCEECTTCEE
T ss_pred eEEcCC---CEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCC-cEECCCCEECCCCEE
Confidence 122222 3344444455778999999999999988544 4445555555555555 346888888888764
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=351.66 Aligned_cols=381 Identities=19% Similarity=0.247 Sum_probs=258.5
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
+.++.+||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+. . ++
T Consensus 3 ~~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~---~~ 70 (456)
T 2v0h_A 3 KKALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLA-----N---EQ 70 (456)
T ss_dssp -CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTT-----T---CC
T ss_pred CCcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhh-----c---CC
Confidence 3468999999999999984 689999999999 9999999999999999999999997766655542 1 11
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
++++... +..|++++++.++.+++ ..+.||+++||+ +...++.++++.|.+ +++++++.
T Consensus 71 ---~~~v~~~---------~~~g~~~~~~~~~~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 131 (456)
T 2v0h_A 71 ---VNWVLQT---------EQLGTAHAVQQAAPFFK-----DNENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTV 131 (456)
T ss_dssp ---CEEEECS---------CCCCHHHHHHHHGGGCC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred ---cEEEeCC---------CCCCcHHHHHHHHHhcC-----CCCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEe
Confidence 3443322 13699999999887663 147899999999 446779999998866 67888887
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~- 328 (527)
+.++ +..|+.+..| +|++..+.|||..... ....+++++|+|+|+++.|.+.++...+.
T Consensus 132 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 191 (456)
T 2v0h_A 132 NLDN--PTGYGRIIRE-NGNVVAIVEQKDANAE-----------------QLNIKEVNTGVMVSDGASFKKWLARVGNNN 191 (456)
T ss_dssp ECSS--CTTSCEEEEE-TTEEEEEECTTTCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCS
T ss_pred ecCC--CCccceEEEc-CCcEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhcccc
Confidence 7765 4568988887 8899999998753210 01246899999999999876676654322
Q ss_pred --CCchhhhhHHhhhhc-CceEEEEecce--EEecCCHHHHHHHHHHhhccC------CCCccCCC-CCCCCCCCccCCC
Q 009720 329 --SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP-KTPFYTSPRFLPP 396 (527)
Q Consensus 329 --~~d~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~-~~~i~~~~~~~~p 396 (527)
...+..++++.++.. .++..|.++++ |.+|+||+||.+|+..+..+. ....+++| ...+...+.+.+.
T Consensus 192 ~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~ 271 (456)
T 2v0h_A 192 AQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKD 271 (456)
T ss_dssp TTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSS
T ss_pred ccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCC
Confidence 223457888888776 58999999765 569999999999998765432 11122232 1223333344444
Q ss_pred eeeec-eee-eeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhH--HhhhcCCccceEeC---
Q 009720 397 TKIDN-CRI-KDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVG--- 468 (527)
Q Consensus 397 ~~i~~-~~i-~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~Ig--- 468 (527)
+.|++ +.| .+++||++|.|++ +.|.+++||++|.|+++|.|.++.+..+........+ .+.++++ +.||
T Consensus 272 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~---~~ig~~~ 348 (456)
T 2v0h_A 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAE---THVGNFV 348 (456)
T ss_dssp CEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTT---CEEEEEE
T ss_pred CEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCC---CEECCCC
Confidence 44432 444 3577777777773 6667777777777777777766544433222221111 1111111 2222
Q ss_pred --------CCcEE------eeeEEcCCCEECCCcEEeC-------CCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 469 --------RNTKI------RNCIIDKNVKIGKDVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 469 --------~~~~I------~~~iI~~~~~Ig~~~~i~~-------~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++++| .++.||+|+.||++++|.+ ...+++++.++.++.|..| +.||++++|++|++|
T Consensus 349 ~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~-v~Ig~~~~ig~~s~v 427 (456)
T 2v0h_A 349 EIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VKVANGATIGAGTTI 427 (456)
T ss_dssp EEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEES-EEECTTCEECTTCEE
T ss_pred EEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCC-cEECCCCEECCCCEE
Confidence 22222 2358888889999998887 3445555666666666555 346888888888764
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=297.00 Aligned_cols=244 Identities=18% Similarity=0.278 Sum_probs=195.9
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCcc---
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTN--- 169 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~--- 169 (527)
.|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ +.....
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 80 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTN 80 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CC
T ss_pred ceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhccc
Confidence 37899999999999999999999999999999 9999999999999999999999999888887774321 110000
Q ss_pred ------------cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-----HHH
Q 009720 170 ------------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-----YMD 232 (527)
Q Consensus 170 ------------~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-----l~~ 232 (527)
++ ..+.++. +. ++.||+++|+.++.++. .++|+|++||++++.+ +.+
T Consensus 81 ~~~~~~~~~~~~~~-~~i~~~~--~~-------~~~Gt~~al~~a~~~l~------~~~~lv~~~D~~~~~~~~~~~l~~ 144 (281)
T 3juk_A 81 KENALKSIRNIIEK-CCFSYVR--QK-------QMKGLGHAILTGEALIG------NEPFAVILADDLCISHDHPSVLKQ 144 (281)
T ss_dssp HHHHHHHHHHHHHH-CEEEEEE--CS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEEECTTSCCHHHH
T ss_pred chhhhhhhhccccC-ccEEEEe--cC-------CCCCcHHHHHHHHHHcC------CCCEEEEeCCeeccCccchHHHHH
Confidence 11 1233332 22 24699999999998885 3789999999999988 999
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECC--CC--ceEEEEecCCccccccccccccccCCCccccccCCceeee
Q 009720 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDN--MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308 (527)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~--~g--~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 308 (527)
+++.|.+.++ .++.+..++.+.+.+||++..|+ +| +|..|.|||..... .++++++
T Consensus 145 l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~ 204 (281)
T 3juk_A 145 MTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVI 204 (281)
T ss_dssp HHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEE
Confidence 9999988887 67777777655578899999986 78 99999999974211 2478999
Q ss_pred eEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccC
Q 009720 309 GVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 309 GIYif~~~iL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
|+|+|++++|. .++...+. ......++++.+++++++.+|.++++|.|||||+||.+|++.++...
T Consensus 205 GiYi~~~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~~ 272 (281)
T 3juk_A 205 GRYILTPDIFE-ILSETKPGKNNEIQITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKR 272 (281)
T ss_dssp EEEEECTTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHH-HHHhcCCCCCCceeHHHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhch
Confidence 99999999985 55554322 11234789999998889999999999999999999999999988643
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=284.33 Aligned_cols=237 Identities=19% Similarity=0.336 Sum_probs=193.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCc-hhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~ 170 (527)
.+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++.. +++.+++. .+..+
T Consensus 22 ~~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~-----~~~~~ 95 (269)
T 4ecm_A 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLG-----SGQEF 95 (269)
T ss_dssp --CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT-----TSGGG
T ss_pred ccCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHh-----hcccc
Confidence 4678999999999999999999999999999999 99999999999999999999999753 56655553 22234
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
+. .+.++. +. +..||+++|+.++.+++ .++|++++||+++..++.++++.|+++++++++++.+
T Consensus 96 ~~-~i~~~~--~~-------~~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~ 159 (269)
T 4ecm_A 96 GV-SFTYRV--QD-------KAGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQS 159 (269)
T ss_dssp TC-EEEEEE--CS-------SCCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEE
T ss_pred Cc-eEEEee--CC-------ccCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEE
Confidence 31 233322 22 23699999999988874 3799999999999999999999999989999999988
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-C
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-S 329 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~-~ 329 (527)
+++ +..||++..|+ |+|+.|.|||..+ .++++++|+|+|++++|. .++...+. .
T Consensus 160 ~~~--~~~~g~v~~d~-g~v~~~~ekp~~~---------------------~~~~~~~Giy~~~~~~l~-~l~~~~~~~~ 214 (269)
T 4ecm_A 160 VDD--PERFGVANIQN-RKIIEIEEKPKEP---------------------KSSYAVTGIYLYDSKVFS-YIKELKPSAR 214 (269)
T ss_dssp CSC--GGGSEEEEEET-TEEEEEEESCSSC---------------------SCSEEEEEEEEECTTHHH-HHTSCCBCTT
T ss_pred CCC--CCCceEEEEcC-CEEEEEEECCCCC---------------------CCcEEEEEEEEECHHHHH-hhhhcCCCCC
Confidence 776 56799999974 9999999998533 247899999999999885 45543321 2
Q ss_pred Cc-hhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccC
Q 009720 330 ND-FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 330 ~d-~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
.+ +..++++.+++++++.++.++++|.|||||+||.+|++.+.+..
T Consensus 215 ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 215 GELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp SCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred CeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 22 35789999998889999999999999999999999999988654
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=282.19 Aligned_cols=246 Identities=22% Similarity=0.286 Sum_probs=191.8
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccC----
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGN---- 166 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~---- 166 (527)
++.|++||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ +..
T Consensus 6 ~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 84 (302)
T 2e3d_A 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_dssp CSCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC-
T ss_pred hcccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhh
Confidence 4578999999999999999999999999999999 9999999999999999999999998888888875321 000
Q ss_pred -Cc-----------ccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC------
Q 009720 167 -GT-----------NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM------ 228 (527)
Q Consensus 167 -~~-----------~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~------ 228 (527)
+. .++ ..+.++. +. +..||+++|+.++.++. .++|++++||++++.
T Consensus 85 ~~~~~~l~~~~~~~~~~-~~i~~~~--~~-------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~~~ 148 (302)
T 2e3d_A 85 RVKRQLLDEVQSICPPH-VTIMQVR--QG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLS 148 (302)
T ss_dssp ---CHHHHHHHHTSCTT-CEEEEEE--CS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEECTTSSCTT
T ss_pred ccchhhhhhhhhccccC-cceEEee--CC-------ccCCHHHHHHHHHHHcC------CCcEEEEcCCccccCccccch
Confidence 00 011 1233332 21 23699999999998884 378999999999872
Q ss_pred --CHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEEC----CCC---ceEEEEecCCccccccccccccccCCCcccc
Q 009720 229 --DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (527)
Q Consensus 229 --dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D----~~g---~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~ 299 (527)
++.++++.|++.++ .++.+.+.++ ++.||++..| ++| +|..|.|||.....
T Consensus 149 ~~~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~----------------- 208 (302)
T 2e3d_A 149 QDNLAEMIRRFDETGH-SQIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA----------------- 208 (302)
T ss_dssp TSTHHHHHHHHHHHCC-EEEEEEECSC--GGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC-----------------
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEEccC--CCCccEEEecccccCCCCceeEEEEEECCCCCcc-----------------
Confidence 79999999988777 7777777643 5689999874 567 89999999864210
Q ss_pred ccCCceeeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCC
Q 009720 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA 377 (527)
Q Consensus 300 ~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~ 377 (527)
.++++++|+|+|++++|. .++...+. ...+..++++.+++++++.+|.++++|.|||||++|.+|++.++...+.
T Consensus 209 --~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~~~~ 285 (302)
T 2e3d_A 209 --PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNT 285 (302)
T ss_dssp --SCSEEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHHCTT
T ss_pred --ccceEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhcCcc
Confidence 247899999999999885 45543332 1223578888888778999999999999999999999999887655543
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-33 Score=280.60 Aligned_cols=248 Identities=18% Similarity=0.259 Sum_probs=174.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-c-----c
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F-----G 165 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~-----~ 165 (527)
+..|++||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ + .
T Consensus 12 ~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 90 (297)
T 2ux8_A 12 KPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAA 90 (297)
T ss_dssp CCCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHT
T ss_pred cCccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhh
Confidence 3558999999999999999999999999999999 9999999999999999999999998888877764211 0 0
Q ss_pred CC---------cccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec---CCHHHH
Q 009720 166 NG---------TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR---MDYMDF 233 (527)
Q Consensus 166 ~~---------~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~---~dl~~l 233 (527)
.+ ...+ ..+.++... +..||+++|+.++.++. .++|++++||++++ .++.++
T Consensus 91 ~~~~~~~~~~~~~~g-~~i~~~~~~---------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~l 154 (297)
T 2ux8_A 91 RGKSLDVLDGTRLKP-GNIAYVRQQ---------EPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQM 154 (297)
T ss_dssp TTCCGGGGTTSCCST-TSEEEEECC---------SCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHHH
T ss_pred ccchhhhhhhcccCC-CceEEEeCC---------CCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHHH
Confidence 00 0011 124444321 23699999999998874 37899999999987 569999
Q ss_pred HHHHHHcCCcEEEEEEEcCCCCCCCceEEEECC--CC--ceEEEEecCCccccccccccccccCCCccccccCCceeeee
Q 009720 234 IQSHVDRDADITISCAAVGESRASDYGLVKIDN--MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309 (527)
Q Consensus 234 l~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~--~g--~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~G 309 (527)
++.|.+.++ .++.+.+.+...+..||++..|+ +| +|..|.|||..... .++++++|
T Consensus 155 ~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~G 214 (297)
T 2ux8_A 155 VDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIG 214 (297)
T ss_dssp HHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEE
T ss_pred HHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEE
Confidence 999988776 56666665433456799887763 55 89999999853210 24688999
Q ss_pred EEEEeHHHHHHHHHhhCCC-CCc-hhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCC
Q 009720 310 VYVFKKDVLFKLLRWRYPT-SND-FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA 377 (527)
Q Consensus 310 IYif~~~iL~~ll~~~~~~-~~d-~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~ 377 (527)
+|+|++++|. .++...+. ..+ +..++++.+++++++.+|.++++|.||||++||.+|++.++...+.
T Consensus 215 iyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~~~ 283 (297)
T 2ux8_A 215 RYILQPEVMR-ILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRPD 283 (297)
T ss_dssp EEEECTHHHH-HHHHTC--------CCTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHCTT
T ss_pred EEEECHHHHH-HHHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcChh
Confidence 9999999875 45544332 112 2467888888878999999999999999999999999988866544
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=268.08 Aligned_cols=244 Identities=18% Similarity=0.284 Sum_probs=179.3
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhc-cCCccc--C
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYF-GNGTNF--G 171 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~-~~~~~~--~ 171 (527)
|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+. +.+..+ .
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 81 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA 81 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGG
T ss_pred cEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhccccccccccccc
Confidence 7899999999999999999999999999999 99999999999999999999999998888888853211 011111 0
Q ss_pred CCeEEEeccccCCCC---CCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEE
Q 009720 172 DGFVEVLAATQTPGE---SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~---~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~ 248 (527)
.+.++++.....+-+ ..+....||+++|+.++.+++ ..++|++++||+++..++.++++.|.+.++++|+..
T Consensus 82 ~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~ 156 (259)
T 1tzf_A 82 ENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTA 156 (259)
T ss_dssp GTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEE
T ss_pred ccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-----CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEE
Confidence 011223221000000 000113699999999987763 247899999999999999999999988888887754
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
. .. ++.||++.+| +|+|..|.|||... .+++++|+|+|++++|. .++. .
T Consensus 157 ~--~~--~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~-~l~~---~ 205 (259)
T 1tzf_A 157 T--FP--PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LIDN---D 205 (259)
T ss_dssp E--CC--CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GCCS---T
T ss_pred e--cC--CCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHH-hhcc---c
Confidence 3 22 4579999888 89999999998642 25789999999999884 3221 2
Q ss_pred CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccC
Q 009720 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
..+|..++++.+++++++++|.++++|.||||++||.+|++.+....
T Consensus 206 ~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~ 252 (259)
T 1tzf_A 206 ATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp TCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhcCC
Confidence 23566788988888889999999999999999999999999887643
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=276.13 Aligned_cols=250 Identities=20% Similarity=0.277 Sum_probs=189.4
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-cc----C
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----N 166 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~----~ 166 (527)
++.|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+ +. .
T Consensus 10 ~~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~ 88 (323)
T 2pa4_A 10 NAVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLME 88 (323)
T ss_dssp --CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHH
T ss_pred hcceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhc
Confidence 3458999999999999999999999999999999 9999999999999999999999998888877663211 00 0
Q ss_pred -C--------cc--cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--CCHHHH
Q 009720 167 -G--------TN--FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDF 233 (527)
Q Consensus 167 -~--------~~--~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--~dl~~l 233 (527)
+ .. ++ ..+.++. +. +..||+++|+.++.++.+ ..+.|++++||++++ .++.++
T Consensus 89 ~~~~~~~~~~~~~~~g-~~i~~~~--~~-------~~~Gt~~al~~a~~~l~~----~~d~~lv~~~D~~~~~~~~l~~l 154 (323)
T 2pa4_A 89 RGKTDQVEIIRRAADL-IKAVPVT--QD-------KPLGLGHAVGLAESVLDD----DEDVVAVMLPDDLVLPTGVMERM 154 (323)
T ss_dssp TTCHHHHHHTTHHHHH-CEEEEEE--CS-------SCCCHHHHHHTTGGGSCS----SCCEEEEECTTEEEESSCHHHHH
T ss_pred cchhhhhhhhhccccC-cceEEEe--CC-------ccCCcHHHHHHHHHHhcC----CCCeEEEEeCCcccCchHHHHHH
Confidence 0 00 11 1244333 21 236999999998876641 123399999999987 568999
Q ss_pred HHHHHHcCCcEEEEEEEcCCCCCCCceEEEEC----CCC--ceEEEEecCCccccccccccccccCCCccccccCCceee
Q 009720 234 IQSHVDRDADITISCAAVGESRASDYGLVKID----NMG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS 307 (527)
Q Consensus 234 l~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D----~~g--~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 307 (527)
++.|.+.++ .++.+.+++.+..+.||++.+| +++ +|..|.|||..... .+++++
T Consensus 155 ~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~ 214 (323)
T 2pa4_A 155 AQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAA 214 (323)
T ss_dssp HHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEE
T ss_pred HHHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEE
Confidence 999987765 5677777654345689999887 554 99999999853211 246899
Q ss_pred eeEEEEeHHHHHHHHHhhCCCC-Cc-hhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCC
Q 009720 308 MGVYVFKKDVLFKLLRWRYPTS-ND-FGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA 377 (527)
Q Consensus 308 ~GIYif~~~iL~~ll~~~~~~~-~d-~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~ 377 (527)
+|+|+|++++|. .++...+.. .+ +..++++.++++ .++.+|.++++|.|||||+||.+|++.++...+.
T Consensus 215 ~GiY~~~~~~~~-~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~~~ 286 (323)
T 2pa4_A 215 TGRYLLDRKIFD-ALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHPV 286 (323)
T ss_dssp EEEEEEETHHHH-HHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTCTT
T ss_pred EEEEEECHHHHH-HHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcChh
Confidence 999999999885 445443321 12 247889998887 7999999999999999999999999988865544
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=266.08 Aligned_cols=228 Identities=12% Similarity=0.118 Sum_probs=172.3
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHH-cCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V 175 (527)
+||||||.||||+|+|..+||||+||+|+ |||+|+++++.+ +|+++|+|++++..+ +.+++.+.+- .++...+
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~----~~~~~~~ 75 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKAT----QLGIKQF 75 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHH----HHTCSSE
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHH----HcCCCCc
Confidence 79999999999999999999999999999 999999999999 799999999999766 5566643221 1111112
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
.++.. +. +.+||++||+++++++.+......++|+|++||+++ +.++.++ ..+++.++++.++++
T Consensus 76 ~~~~~-~~-------~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~- 141 (255)
T 4evw_A 76 YIAEL-HT-------ETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG- 141 (255)
T ss_dssp EEEEE-SS-------CCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS-
T ss_pred eEEEe-CC-------CCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC-
Confidence 22211 21 236999999999998831000124789999999998 5566543 256788999988875
Q ss_pred CCCCceEEEECCCC--ceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHH-HHHHHHHh----hCC
Q 009720 255 RASDYGLVKIDNMG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRW----RYP 327 (527)
Q Consensus 255 ~~~~~g~v~~D~~g--~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~-iL~~ll~~----~~~ 327 (527)
+ .||++..|++| +|++|.||+.. ++++++|+|+|++. .|.+.+.+ ..+
T Consensus 142 -p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~ 196 (255)
T 4evw_A 142 -D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPSQ 196 (255)
T ss_dssp -S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCGG
T ss_pred -C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhcccc
Confidence 3 79999999888 99999999432 36899999999986 34333322 211
Q ss_pred ---CCCchhhhhHHhhhhc-CceEEEEec-ceEEecCCHHHHHHHHH
Q 009720 328 ---TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANM 369 (527)
Q Consensus 328 ---~~~d~~~dii~~li~~-~~V~~~~~~-g~w~dIgt~~d~~~An~ 369 (527)
....+.+++++.++++ .+|.+|.++ ++|.|+|||++|.+|..
T Consensus 197 ~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~ 243 (255)
T 4evw_A 197 EWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLR 243 (255)
T ss_dssp GCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHH
T ss_pred cccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHh
Confidence 2334678999999877 579999986 99999999999999854
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=272.20 Aligned_cols=259 Identities=15% Similarity=0.159 Sum_probs=188.0
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceee--CCcchhHHHHHHHHHHcCCCEEEEEeccCc-hhHHHHHHHhhccCCc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPV--AGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGT 168 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpI--gGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~ 168 (527)
|.+|.+||||||.||||+| ||+|+|| +|+ |||+|+++++.++|+++|+|++++.. +++.+|+...+
T Consensus 3 ~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~----- 71 (303)
T 3pnn_A 3 AMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKY----- 71 (303)
T ss_dssp CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHH-----
T ss_pred CCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHh-----
Confidence 3457999999999999998 6999999 599 99999999999999999999999985 78888886433
Q ss_pred ccCCCeEEEecccc-CCCC-----CCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHH--
Q 009720 169 NFGDGFVEVLAATQ-TPGE-----SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD-- 239 (527)
Q Consensus 169 ~~~~~~V~vl~~~q-~~~~-----~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~-- 239 (527)
.++ ..++++.... ...+ ....++.||++||++++++++ ++|+|++||++++.+ +.+++++|.+
T Consensus 72 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~-------~~~lV~~gD~l~~~~~~~~l~~~~~~~~ 143 (303)
T 3pnn_A 72 EGR-IPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR-------EPFAVINADDFYGRNGFEVLARKLMTLE 143 (303)
T ss_dssp TTT-SCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC-------SCEEEEESSCBCCHHHHHHHHHHHHTTT
T ss_pred ccC-CcEEEEecccccccccccccccccccCCcHHHHHHHHHhcC-------CCEEEEECCeecCHHHHHHHHHHHHHhc
Confidence 111 1244432220 0000 000134699999999987763 789999999999876 8999999976
Q ss_pred -cCCcEEEEEEEcCCCCCCCc-----eEEEECCCCceEEEEecCCcccccc-ccccccccCCCccccccCCceeeeeEEE
Q 009720 240 -RDADITISCAAVGESRASDY-----GLVKIDNMGRIAQFAEKPSGANLKA-MQVDTSLLGFSPQEARKCPYVASMGVYV 312 (527)
Q Consensus 240 -~~ad~tv~~~~~~~~~~~~~-----g~v~~D~~g~V~~~~EKp~~~~~~~-~~v~~~~~~~~~~~~~~~~~l~~~GIYi 312 (527)
+++++++++.+++++ .++| |++.+|++|+|++|.|||....... ...... -| . ......++++++|+|+
T Consensus 144 ~~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~-~g-~-~~~~~~~~~i~~GiY~ 219 (303)
T 3pnn_A 144 GKQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDE-TG-K-ICTLAEDAPVSMNMWG 219 (303)
T ss_dssp TCSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECT-TS-C-EEEECTTCEEEEEEEE
T ss_pred cccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccccc-cc-c-cccCCCCCEEEEEEEE
Confidence 578899999988763 1345 7899998999999999996531000 000000 00 0 0000135789999999
Q ss_pred EeHHHHHHHHH-------hhCC--CCCchhhhhHHhhhhcC--ceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 313 FKKDVLFKLLR-------WRYP--TSNDFGSEIIPAAIMEH--DVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 313 f~~~iL~~ll~-------~~~~--~~~d~~~dii~~li~~~--~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
|++++|..+.+ +..+ ....+..++++.+++++ +|.+|.++++|.||||++||.+|+..+.+
T Consensus 220 f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 220 FTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp ECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 99999864422 1212 22335688999999886 79999999999999999999999988765
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=264.25 Aligned_cols=233 Identities=21% Similarity=0.361 Sum_probs=185.3
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEec-cCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~-~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
+|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++ +..+.+.+++. ++..++.
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~-----~g~~~g~ 76 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLG-----DGSQFGV 76 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT-----TSGGGTS
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhh-----hccccCc
Confidence 47999999999999999999999999999999 99999999999999999999885 56666766653 3333431
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.+.++. +.. +.|++++++.++.++. .++++++.||+++ ..++.++++.|.+.+.+.++++.++
T Consensus 77 -~i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 140 (295)
T 1lvw_A 77 -RFSYRV--QEE-------PRGIADAFIVGKDFIG------DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV 140 (295)
T ss_dssp -EEEEEE--CSS-------CCCGGGHHHHTHHHHT------TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred -eEEEee--CCC-------CCChHHHHHHHHHHhC------CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEEC
Confidence 233332 221 2599999999998885 2678888899865 6789999999987777888888888
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-CC
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN 330 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~-~~ 330 (527)
.+ +.+||++.+|++|+|.+|.|||..+ .++++++|+|+|+++++.. ++...+. ..
T Consensus 141 ~d--p~~~g~v~~d~~g~v~~~~ekp~~~---------------------~s~~~~~Giy~f~~~~l~~-~~~~~~~~~g 196 (295)
T 1lvw_A 141 RD--PRPFGVVEFDSEGRVISIEEKPSRP---------------------KSNYVVPGLYFYDNQVVEI-ARRIEPSDRG 196 (295)
T ss_dssp SC--CTTSEEEEECTTSBEEEEEESCSSC---------------------SCSEECCSEEEECTTHHHH-HHHCCCCTTS
T ss_pred CC--cccCCEEEECCCCcEEEEEECCCCC---------------------CCCEEEEEeEEEcHHHHHH-HHhcCCcccC
Confidence 76 4579999999999999999998533 2368899999999999864 4443332 12
Q ss_pred c-hhhhhHHhhhhcCceEEEEec-ce-EEecCCHHHHHHHHHHhh
Q 009720 331 D-FGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (527)
Q Consensus 331 d-~~~dii~~li~~~~V~~~~~~-g~-w~dIgt~~d~~~An~~ll 372 (527)
+ ..+++++.+++.+++.++.+. +| |.||||++||.+|+..+.
T Consensus 197 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 197 ELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 2 247888888888888888875 75 999999999999998765
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=264.63 Aligned_cols=233 Identities=25% Similarity=0.404 Sum_probs=185.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEe-ccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~-~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
+|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++ .+..+.+.+++. .+..|+.
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~-----~g~~~g~ 75 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLG-----DGSNWGL 75 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT-----TSGGGTC
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHh-----cccccCc
Confidence 47899999999999999999999999999999 9999999999999999999887 455666766653 3333441
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.+.++ .+.. +.|++++++.++.++. .++++++.||+++ ..++.++++.|.+.+.+.++++.++
T Consensus 76 -~i~~~--~~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 139 (293)
T 1fxo_A 76 -DLQYA--VQPS-------PDGLAQAFLIGESFIG------NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV 139 (293)
T ss_dssp -EEEEE--ECSS-------CCCGGGHHHHTHHHHT------TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred -eEEEe--eCCC-------CCCHHHHHHHHHHHhC------CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEEC
Confidence 23333 2321 3599999999998885 2788999999865 6789999999987777888888887
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-CC
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN 330 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~-~~ 330 (527)
.+ +.+||++.+|++|+|.+|.|||..+ .++++++|+|+|++++|.. ++...+. ..
T Consensus 140 ~d--p~~~g~v~~d~~g~v~~~~ekp~~~---------------------~s~~~~~Giy~~~~~~l~~-~~~~~~~~~g 195 (293)
T 1fxo_A 140 LD--PERYGVVEFDQGGKAISLEEKPLEP---------------------KSNYAVTGLYFYDQQVVDI-ARDLKPSPRG 195 (293)
T ss_dssp SC--GGGSEEEEECTTSCEEEEEESCSSC---------------------SSSEEEEEEEEECTTHHHH-HHHCCCCTTS
T ss_pred CC--cccCcEEEECCCCcEEEEEECCCCC---------------------CCCeEEEEEEEEcHHHHHH-HHhcCcccCC
Confidence 76 5679999999999999999998533 2468999999999999864 4443332 22
Q ss_pred c-hhhhhHHhhhhcCceEEEEec-ce-EEecCCHHHHHHHHHHhh
Q 009720 331 D-FGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (527)
Q Consensus 331 d-~~~dii~~li~~~~V~~~~~~-g~-w~dIgt~~d~~~An~~ll 372 (527)
+ ..+++++.+++.+++.++... +| |.||||++||.+|+..+.
T Consensus 196 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 196 ELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 2 247888888888888888875 75 999999999999998765
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-31 Score=265.48 Aligned_cols=233 Identities=23% Similarity=0.361 Sum_probs=185.1
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEec-cCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~-~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++..+|+++|+|+++ +..+.+.+++. ++..++.
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~-----~g~~~g~ 76 (296)
T 1mc3_A 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLG-----DGSEFGI 76 (296)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT-----TSGGGTC
T ss_pred ccEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHh-----cccccCc
Confidence 37999999999999999999999999999999 99999999999999999999886 56666666653 3333431
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.+.++. +.. +.|++++++.++.++. .++++++.||+++ ..++.++++.|.+.+.+.++++.++
T Consensus 77 -~i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 140 (296)
T 1mc3_A 77 -QLEYAE--QPS-------PDGLAQAFIIGETFLN------GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV 140 (296)
T ss_dssp -EEEEEE--CSS-------CCCSTHHHHHTHHHHT------TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC
T ss_pred -eEEEec--cCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEEC
Confidence 233332 221 3599999999998885 2678888899865 6789999999977777888888888
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-CC
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN 330 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~-~~ 330 (527)
.+ +.+||++.+|++|+|.+|.|||..+ .++++++|+|+|+++++. .++...+. ..
T Consensus 141 ~d--p~~yg~v~~d~~g~v~~~~ekp~~~---------------------~s~~~~~Giy~~~~~~l~-~~~~~~~~~~g 196 (296)
T 1mc3_A 141 MD--PERFGVVEFDDNFRAISLEEKPKQP---------------------KSNWAVTGLYFYDSKVVE-YAKQVKPSERG 196 (296)
T ss_dssp SC--CSSSBBCEEETTEEEEECCBSCSSC---------------------SCSEEEEEEEECCTHHHH-HHHSCCCCSSS
T ss_pred CC--cccCCEEEECCCCcEEEEEECCCCC---------------------CCCEEEEEEEEEcHHHHH-HHHhcCccccC
Confidence 76 4579999999999999999998533 136899999999999986 44543332 22
Q ss_pred c-hhhhhHHhhhhcCceEEEEec-ce-EEecCCHHHHHHHHHHhh
Q 009720 331 D-FGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (527)
Q Consensus 331 d-~~~dii~~li~~~~V~~~~~~-g~-w~dIgt~~d~~~An~~ll 372 (527)
+ ..+++++.+++.+++.++.+. +| |.||||++||.+|+..+.
T Consensus 197 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 197 ELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 2 247788888888888888875 75 999999999999998775
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=260.51 Aligned_cols=241 Identities=17% Similarity=0.317 Sum_probs=154.6
Q ss_pred ceEEEEEeCCCCCccccCcc-CCCccceee-CCcchhHHHHHHHHHHcCCCEEEEEeccCc-hhHHHHHHHhhccCCccc
Q 009720 94 NVAAIILGGGAGTKLFPLTL-RAATPAVPV-AGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~-~~PKpLlpI-gGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~ 170 (527)
+|++||||||.||||+|||. .+||||+|| +|+ |||+|+++++.++ +++|+|++++.. +.+.+++. . + +
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~-~----~--~ 74 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIK-N----E--I 74 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTT-T----T--C
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHH-H----h--h
Confidence 48999999999999999996 899999999 598 9999999999999 999999999864 45555553 1 1 2
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHHHHH---HHHcCCcEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQS---HVDRDADIT 245 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~---h~~~~ad~t 245 (527)
+...+.++.... +.||+++|+.++.++. ..+.|++++||+++ +.+ +.++++. |.+.++++|
T Consensus 75 ~~~~~~~i~~~~---------~~gt~~al~~a~~~l~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t 140 (308)
T 2qh5_A 75 KNKSVGFLLESL---------SKNTANAIALSALMSD-----KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVT 140 (308)
T ss_dssp SSCEEEEEEESS---------CCCHHHHHHHHHHTSC-----TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCccEEEeCCC---------CCChHHHHHHHHHHhC-----CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEE
Confidence 211244443221 3699999999987663 12469999999998 566 8999987 777788888
Q ss_pred EEEEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhh
Q 009720 246 ISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (527)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~ 325 (527)
+.+.+..+ ...||++..|++++|..|.|||........ ....++++++|+|+|++++|.+.+++.
T Consensus 141 ~~~~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~-------------~~~g~~~~n~Giy~~~~~~ll~~l~~~ 205 (308)
T 2qh5_A 141 FGVSIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEF-------------QKSGGFYFNSGMFVFQAGVFLDELKKH 205 (308)
T ss_dssp EEEECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHH-------------HHHCCEEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHH-------------hhcCCeEEEeEEEEEEHHHHHHHHHHh
Confidence 88877654 467999998878999999999975321100 000246899999999999875555543
Q ss_pred CCC--------------C----Cchh---hhhHHh---------hhhc-CceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 326 YPT--------------S----NDFG---SEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 326 ~~~--------------~----~d~~---~dii~~---------li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
.+. . .++. .++++. ++++ .++.++.++++|.||||+++|.+++....
T Consensus 206 ~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~~ 283 (308)
T 2qh5_A 206 APTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANEP 283 (308)
T ss_dssp CHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC---------------
T ss_pred ChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcCc
Confidence 221 0 1111 344442 4554 78999999999999999999999986553
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-28 Score=239.75 Aligned_cols=221 Identities=17% Similarity=0.242 Sum_probs=163.4
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+|.+||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+ +.+.| +
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~-~~~~~-------~-- 93 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDY-LKEKY-------G-- 93 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTH-HHHHH-------C--
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHH-HHHhC-------C--
Confidence 58899999999999999999999999999999 9999999999999999999999998777743 33332 2
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
++++...+.. ..|++++|+.++.++ +++++++||+++..++ ++.+.+.++.+++ ...+
T Consensus 94 -~~iv~~~~~~-------~~g~~~al~~a~~~~--------~~~lv~~~D~~~~~~~---~~~~~~~~~~~t~---~~~~ 151 (254)
T 1jyk_A 94 -VRLVFNDKYA-------DYNNFYSLYLVKEEL--------ANSYVIDADNYLFKNM---FRNDLTRSTYFSV---YRED 151 (254)
T ss_dssp -CEEEECTTTT-------TSCTHHHHHTTGGGC--------TTEEEEETTEEESSCC---CCSCCCSEEEEEC---EESS
T ss_pred -cEEEECCCcc-------CCCcHHHHHHHHHHC--------CCEEEEeCCcccCHHH---HHHHHhCCceEEE---Eccc
Confidence 3454433211 259999999887554 2589999999886553 2222222332332 2333
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHH---HHHHHhhCCC--
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL---FKLLRWRYPT-- 328 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL---~~ll~~~~~~-- 328 (527)
+ ...|+++ +|++|+|+.|.|||. ..++++|+|+|+++.+ .+++++..+.
T Consensus 152 ~-~~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~ 205 (254)
T 1jyk_A 152 C-TNEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGE 205 (254)
T ss_dssp C-SSCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTTTC
T ss_pred C-CCCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCC
Confidence 2 1358755 888999999999753 2468999999998743 3344433222
Q ss_pred -CCchhhhhHHhhhhcCceEEEEec-ceEEecCCHHHHHHHHHHhhc
Q 009720 329 -SNDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 329 -~~d~~~dii~~li~~~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~ 373 (527)
...|..++++.+++..++.++.++ ++|.+|+|++||.+|++.+.+
T Consensus 206 ~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~ 252 (254)
T 1jyk_A 206 FVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKN 252 (254)
T ss_dssp CTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred ccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence 234567788888778999999998 799999999999999988764
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-28 Score=249.41 Aligned_cols=233 Identities=18% Similarity=0.281 Sum_probs=169.1
Q ss_pred eEEEEEeCCCCCccccCc-cCCCccceeeCC-cchhHHHHHHHHHHc-CCCEEEEEeccCc-hhHHHHHHHhhccCCccc
Q 009720 95 VAAIILGGGAGTKLFPLT-LRAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT-~~~PKpLlpIgG-k~pLId~~l~~l~~~-Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~ 170 (527)
|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|++++.. ..+.+++. ....+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~-pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~-----~~~~~ 75 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNK-SLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELP-----ELPDE 75 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTB-CHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCT-----TSCGG
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCC-cHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhh-----ccccc
Confidence 789999999999999999 789999999999 7 9999999999997 8999999999864 34444442 21111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC--CH----HHHHHHHHHcCCcE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DY----MDFIQSHVDRDADI 244 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~--dl----~~ll~~h~~~~ad~ 244 (527)
.+ ++. .. .+||++++..+...+. ..+.+++++||+++.. ++ ..+++.|.+.++.+
T Consensus 76 ---~i-i~e-~~---------~~gta~ai~~a~~~~~-----~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~v 136 (336)
T 2x65_A 76 ---NI-IAE-PM---------KKNTAPACFIGTKLAD-----DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLF 136 (336)
T ss_dssp ---GE-EEE-SS---------CCCHHHHHHHHHTTSC-----TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEE
T ss_pred ---eE-EeC-CC---------CCCcHHHHHHHHHhhC-----CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeE
Confidence 12 222 11 2599999998875432 2467999999998854 44 44455577667777
Q ss_pred EEEEEEcCCCCCCCceEEEECCC-----CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHH
Q 009720 245 TISCAAVGESRASDYGLVKIDNM-----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (527)
Q Consensus 245 tv~~~~~~~~~~~~~g~v~~D~~-----g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~ 319 (527)
|+.+.+... .+.||+++.|++ ++|..|.|||.....+.. .....+++++|+|+|+++.|.
T Consensus 137 t~~i~p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g~y~~n~Giy~~~~~~ll 201 (336)
T 2x65_A 137 TFGIVPTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKF-------------VESGRFLWNSGMFLWKAREFI 201 (336)
T ss_dssp EEEECCCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHH-------------HHHTCEEEEEEEEEEEHHHHH
T ss_pred EEEeecccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHH-------------HhcCCeEEEeeeEEEEHHHHH
Confidence 777766544 357999998765 799999999975421100 001237899999999999885
Q ss_pred HHHHhhCCC----------CC-chhhhhHHh---------hhhc-CceEEEEecceEEecCCHHHHHHH
Q 009720 320 KLLRWRYPT----------SN-DFGSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEA 367 (527)
Q Consensus 320 ~ll~~~~~~----------~~-d~~~dii~~---------li~~-~~V~~~~~~g~w~dIgt~~d~~~A 367 (527)
+.++...|. .. +|..++++. ++++ .++++++++++|.||||+++|+++
T Consensus 202 ~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 202 EEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 555543321 01 344566665 3444 789999999999999999999999
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=239.73 Aligned_cols=233 Identities=20% Similarity=0.297 Sum_probs=165.9
Q ss_pred eEEEEEeCCCCCccccCc-cCCCccceeeCC-cchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 95 VAAIILGGGAGTKLFPLT-LRAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT-~~~PKpLlpIgG-k~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|++++.... .+ ..+++.
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~-pli~~~l~~l~~~~~~~~iiVvt~~~~~~---~i-~~~l~~----- 72 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEA---VA-RPYADG----- 72 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHH---HH-GGGCSS-----
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcCCCC-hHHHHHHHHHhCcCCCCCEEEEcChHHHH---HH-HHHhcc-----
Confidence 799999999999999999 689999999999 7 9999999999998 899999999885322 12 233322
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC--CHHHHH----HHHHHcCCcEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFI----QSHVDRDADIT 245 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~--dl~~ll----~~h~~~~ad~t 245 (527)
..+ ++.+ +..||++++..+.. +... ...+.+++++||+++.. .+..++ +.|.+ ++.+|
T Consensus 73 -~~~-i~e~----------~~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt 136 (337)
T 2cu2_A 73 -IRL-LLEP----------LGRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVA 136 (337)
T ss_dssp -SEE-EEES----------SCCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEE
T ss_pred -Cce-EecC----------CCCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEE
Confidence 112 3321 13599999998887 5421 12478999999998853 344444 44444 66777
Q ss_pred EEEEEcCCCCCCCceEEEECCC----CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHH
Q 009720 246 ISCAAVGESRASDYGLVKIDNM----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (527)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~D~~----g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~l 321 (527)
+.+.+..+ .+.||+++.|++ ++|..|.|||.....+... . ..+++++|+|+|++++|...
T Consensus 137 ~~i~p~~~--~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~-------------~-~g~~~n~Giy~f~~~~ll~~ 200 (337)
T 2cu2_A 137 LGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI-------------R-KGYVWNGGVFAFAPATMAEL 200 (337)
T ss_dssp EEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH-------------H-TTCEEEEEEEEECHHHHHHH
T ss_pred EeeccCCC--CCCceEEEECCcccccCeEEEEEeCCChHHHHHHh-------------h-cCCEEEEEEEEEeHHHHHHH
Confidence 77766544 357999998766 8999999999754211100 0 11789999999999988656
Q ss_pred HHhhCCCCC-ch--------hhhhHHh---------hhhc-CceEEEEecceEEecCCHHHHHHHHH
Q 009720 322 LRWRYPTSN-DF--------GSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (527)
Q Consensus 322 l~~~~~~~~-d~--------~~dii~~---------li~~-~~V~~~~~~g~w~dIgt~~d~~~An~ 369 (527)
+++..+... .+ ..+.++. ++++ .++++++++++|.||||+++|+++..
T Consensus 201 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~ 267 (337)
T 2cu2_A 201 FRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (337)
T ss_dssp HHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhh
Confidence 655433210 00 1234443 3444 68999999999999999999999843
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=224.12 Aligned_cols=239 Identities=13% Similarity=0.203 Sum_probs=170.4
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
++.+||||||.|||| | ||||+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++. . ++
T Consensus 2 ~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~-~-------~g-- 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQ-A-------FG-- 62 (252)
T ss_dssp CEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-H-------TT--
T ss_pred ceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHH-H-------cC--
Confidence 378999999999999 4 7999999999 99999999999999999999995 467776664 2 22
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
++++...+. ++.||++ +..+...+. ....+.|++++||. +. ..++.++++.|.+.++++++++.++
T Consensus 63 -~~v~~~~~~-------~~~Gt~~-~~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v 130 (252)
T 3oam_A 63 -GVVCMTSPN-------HQSGTER-LAEVVAKMA---IPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEI 130 (252)
T ss_dssp -CEEEECCTT-------CCSHHHH-HHHHHHHTT---CCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEE
T ss_pred -CEEEEcCCC-------CCCcHHH-HHHHHHhcC---cCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeec
Confidence 333332221 2369988 455554442 01357899999998 33 5679999999988888999999998
Q ss_pred CCCCCCCc-----eEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC
Q 009720 252 GESRASDY-----GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (527)
Q Consensus 252 ~~~~~~~~-----g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~ 326 (527)
++ +..| |.|..|++|+++.|.+||-.......... ......+++.++|+|+|++++|..+....
T Consensus 131 ~~--~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~--------~~~~~~~~~~n~GiY~~~~~~l~~~~~~~- 199 (252)
T 3oam_A 131 ED--EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKA--------DKAIVQPLLRHIGIYAYRAGFINTYLDWQ- 199 (252)
T ss_dssp CC--HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSS--------SCCCCSCEEEEEEEEEEETTHHHHHHHSC-
T ss_pred CC--HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccccc--------cccccccceEEEEEEEcCHHHHHHHHcCC-
Confidence 76 3345 89999999999999999854321100000 00001357899999999999998765432
Q ss_pred CCCCchh--hhhHHhhhhcCceEEEEecc-eEEecCCHHHHHHHHHHhhcc
Q 009720 327 PTSNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTKE 374 (527)
Q Consensus 327 ~~~~d~~--~dii~~li~~~~V~~~~~~g-~w~dIgt~~d~~~An~~ll~~ 374 (527)
++..+.. -+.+..+-...+|.++..++ +|.|||||+||.+|+..+.++
T Consensus 200 ~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 200 PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 2211111 12333333357899987754 689999999999999877653
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-24 Score=209.72 Aligned_cols=237 Identities=14% Similarity=0.158 Sum_probs=161.2
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
++.+||||||.||||. ||+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++. . ++
T Consensus 9 ~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~-~-------~g-- 69 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAE-D-------FG-- 69 (256)
T ss_dssp CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-H-------TT--
T ss_pred CceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHH-H-------cC--
Confidence 4789999999999994 8999999999 99999999999999999999986 466666664 2 22
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHc-CCcEEEEEEE
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDR-DADITISCAA 250 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~-~ad~tv~~~~ 250 (527)
++++...+ .++.||+. ++++...+. ....+.|+++.||..+ ...+.++++.|.+. ++++++++.+
T Consensus 70 -~~v~~~~~-------~~~~Gt~~-i~~a~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~ 137 (256)
T 3tqd_A 70 -AVVCMTSS-------DHQSGTER-IAEAAVALG---FEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTP 137 (256)
T ss_dssp -CEEEECCT-------TCCSHHHH-HHHHHHHTT---CCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEE
T ss_pred -CeEEEeCC-------CCCCcHHH-HHHHHHHhC---cCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeE
Confidence 23333222 23468876 777776663 1135789999999943 45689999999874 5678888888
Q ss_pred cCCC----CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC
Q 009720 251 VGES----RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (527)
Q Consensus 251 ~~~~----~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~ 326 (527)
+.++ ++..++ |.+|++|+++.|.+||.+.....+.. ++......+++.+.|+|.|++++|..+.. ..
T Consensus 138 v~~~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~~-------~~~~~~~~~~~~~~GiY~y~~~~l~~~~~-l~ 208 (256)
T 3tqd_A 138 ITEVDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFSD-------KENLQLNGSHYRHVGIYAYRVGFLEEYLS-WD 208 (256)
T ss_dssp CCCHHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTTC-------GGGCCCSSCCEEEEEEEEEEHHHHHHHHH-SC
T ss_pred cCCHHHhhCCCccE-EEECCCCEEeEEecCCCCCCCccccc-------ccccccCCcceEEEEEEEcCHHHHHHHHh-CC
Confidence 7542 222233 56899999999999987432110000 00001113589999999999999986643 32
Q ss_pred CCCCchhh--hhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHH
Q 009720 327 PTSNDFGS--EIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMA 370 (527)
Q Consensus 327 ~~~~d~~~--dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~ 370 (527)
++..+... +.++.+-...+|+++.++++ |.|||||+||.+|+..
T Consensus 209 ~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 209 ACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred CCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 32111101 22343344579999999876 8999999999999753
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=209.52 Aligned_cols=236 Identities=15% Similarity=0.215 Sum_probs=165.7
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
++.+||||||.|||| | +|+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++. . ++
T Consensus 18 ~~~aIIlA~G~stRl-p-----~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~-~-------~g-- 78 (264)
T 3k8d_A 18 SFVVIIPARYASTRL-P-----GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVE-A-------AG-- 78 (264)
T ss_dssp CCEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-H-------TT--
T ss_pred ceEEEEEcCCCCCCC-C-----CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHH-H-------cC--
Confidence 378999999999999 2 5999999999 99999999999999999999995 466666653 2 22
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ecCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l--~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
++++...+ .|+.||+. +..+...+. ....+.++++.||.. ....+.++++.|.+.++++++++.++
T Consensus 79 -~~v~~~~~-------~~~~Gt~~-i~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v 146 (264)
T 3k8d_A 79 -GEVCMTRA-------DHQSGTER-LAEVVEKCA---FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 146 (264)
T ss_dssp -CEEEECCT-------TCCSHHHH-HHHHHHHHT---CCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEEC
T ss_pred -CEEEEecC-------CCCCCHHH-HHHHHHHhc---cCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEc
Confidence 33332222 23468876 777776663 123578999999983 35678999999988889999999998
Q ss_pred CCCC-CCCce--EEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 252 GESR-ASDYG--LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 252 ~~~~-~~~~g--~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.++. ..+.+ .|.+|++|+++.|.|||.+........+. .-...+++.++|+|.|++++|..+... .+.
T Consensus 147 ~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~~--------~~~~~~~~~~~GiY~y~~~~l~~~~~~-~~~ 217 (264)
T 3k8d_A 147 HNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGL--------ETVGDNFLRHLGIYGYRAGFIRRYVNW-QPS 217 (264)
T ss_dssp CSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHCS--------SCCCSCCEEECSEEEEEHHHHHHHHHS-CCC
T ss_pred CCHHHccCCCceEEEECCCCeEEEEecCCCCCCCccccccc--------cccCCcceEEEEEEEECHHHHHHHHhC-CCC
Confidence 7631 11222 35689999999999998642110000000 000125789999999999999876542 222
Q ss_pred CCchhh----hhHHhhhhcCceEEEEecc-eEEecCCHHHHHHHHHHh
Q 009720 329 SNDFGS----EIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 329 ~~d~~~----dii~~li~~~~V~~~~~~g-~w~dIgt~~d~~~An~~l 371 (527)
.++. +.+..+-...+|.++...+ +|.+||||+||.+|+..+
T Consensus 218 --~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 218 --PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp --HHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred --hhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 1221 2333333457999987655 589999999999998654
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=195.22 Aligned_cols=223 Identities=16% Similarity=0.199 Sum_probs=152.7
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+.+||||||.|+||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++. . +
T Consensus 3 ~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~-~-------~---- 60 (234)
T 2y6p_A 3 RAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVE-D-------L---- 60 (234)
T ss_dssp EEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHT-T-------T----
T ss_pred eEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHH-h-------c----
Confidence 789999999999996 8999999999 9999999999999 9999999976 56655553 1 1
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+.++...+. +..|+++++. ++..+ ..+.+++++||+ +++ .++.++++.|.+.++.+++......
T Consensus 61 ~~~~~~~~~-------~~~g~~~~~~-~~~~~------~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 126 (234)
T 2y6p_A 61 CEVFLTPSD-------LPSGSDRVLY-VVRDL------DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKE 126 (234)
T ss_dssp SEEEECCTT-------CCSHHHHHHH-HHTTC------CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSG
T ss_pred eEEEECCcc-------cccchHHHHH-HHHhC------CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHH
Confidence 122221111 1247887663 33222 247899999999 776 6789999999887743444443111
Q ss_pred C-CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009720 253 E-SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (527)
Q Consensus 253 ~-~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d 331 (527)
. ..+..++ +..|++|+|..|.|||....... ...+.+.++|+|+|+++.|..+.+. .+...+
T Consensus 127 ~~~~~~~~~-~~~~~~g~v~~~~e~~~~~~~~~---------------~~~~~~~~~giy~~~~~~l~~~~~~-~~~~~~ 189 (234)
T 2y6p_A 127 AYERPEDVK-VVLDREGYALYFSRSPIPYFRKN---------------DTFYPLKHVGIYGFRKETLMEFGAM-PPSKLE 189 (234)
T ss_dssp GGGCTTSCE-EEECTTSBEEEEESSCCSCCSSC---------------CSSCCEEEEEEEEEEHHHHHHHHHS-CCCHHH
T ss_pred HhcCCCceE-EEEcCCCCEeeeecCCCCccccc---------------ccceeeEEEEEEEcCHHHHHHHHhC-CCCccc
Confidence 1 1123344 34578899999999875311000 0013567999999999998766542 111111
Q ss_pred hhhh---hHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHh
Q 009720 332 FGSE---IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 332 ~~~d---ii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~l 371 (527)
. .+ .+..+.+..++.+|.++++|.|||||+||..|+..+
T Consensus 190 ~-~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 190 Q-IEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp H-HHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred h-hhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 1 11 233333468999999999999999999999998765
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=198.17 Aligned_cols=229 Identities=16% Similarity=0.245 Sum_probs=158.7
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCC-CEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGI-NKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi-~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
++.+||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++. .+ +
T Consensus 2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~-~~-------~- 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQ-AF-------G- 63 (245)
T ss_dssp CEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH-HT-------T-
T ss_pred CeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHH-Hc-------C-
Confidence 378999999999999 5 9999999999 999999999999996 999999986 56666653 21 2
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHc-CCcEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDR-DADITISCA 249 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~-~ad~tv~~~ 249 (527)
++++...+. +..|+++++.. ...++ .+.+++++||+.+ ..++.++++.|.+. ++++++.+.
T Consensus 64 --~~~~~~~~~-------~~~g~~~~~~~-~~~~~------~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (245)
T 1h7e_A 64 --GKAIMTRND-------HESGTDRLVEV-MHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH 127 (245)
T ss_dssp --CEEEECCSC-------CSSHHHHHHHH-HHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred --CeEEeCCCc-------cCCcHHHHHHH-HHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEee
Confidence 344432221 23578766543 33332 4789999999943 45689999999887 788888877
Q ss_pred EcCCCCCCCceE--EEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 250 AVGESRASDYGL--VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 250 ~~~~~~~~~~g~--v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
+.+.....+++. +..+++|++..|.+++....... ...+.+.++|+|+|+++.|..++ . .+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~---------------~~~~~~~~~g~y~~~~~~l~~~~-~-~~ 190 (245)
T 1h7e_A 128 AISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYS-Q-LP 190 (245)
T ss_dssp EECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGG-G-SC
T ss_pred cCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCccc---------------ccCceeEEEEEEEcCHHHHHHHH-h-CC
Confidence 762111011222 33367899999998754311000 00135679999999999886654 2 22
Q ss_pred CCCchhhhhHHhhh--h-cCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 328 TSNDFGSEIIPAAI--M-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 328 ~~~d~~~dii~~li--~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
...-..++.++.+. + ..++.++..+++|.|||||+||..|+..+..
T Consensus 191 ~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~ 239 (245)
T 1h7e_A 191 ESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 11112345444432 3 5799999999999999999999999876643
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-23 Score=199.27 Aligned_cols=214 Identities=16% Similarity=0.216 Sum_probs=136.4
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|++|.+||||||.||||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ +..+++.+++.+.| +
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~-------~ 81 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDK-------G 81 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTS-------C
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhc-------C
Confidence 67799999999999999986 9999999999 9999999999999 99999999 77777777764322 1
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHHHHcCCcEEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~~~ad~tv~~~~ 250 (527)
..+.++.... |..|++++++.++.+++ +++++++||+.++.++ ..+++ .. . ++....
T Consensus 82 -~~~~~v~~~~--------~~~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~~~~l~~----~~-~-~~~~~~ 139 (232)
T 2xme_A 82 -FNYKIVRHDR--------PEKGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQFIEKAVR----GE-G-VIADRE 139 (232)
T ss_dssp -CCEEEEECSC--------GGGCHHHHHHTTGGGCC-------SSEEEEETTEEECHHHHHHHTT----CC-E-EEEESS
T ss_pred -CcEEEEECCC--------CCCCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHHHHHHHh----CC-C-cEEEcc
Confidence 1255554221 22599999998875552 6799999999875442 33333 21 1 221111
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
.......+++.+..+ +|++..|.|++.. ++.+++|+|+|++++|. .+++......
T Consensus 140 ~~~~~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~-~l~~~~~~g~ 194 (232)
T 2xme_A 140 PRFVDIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFE-HAEKLRDREE 194 (232)
T ss_dssp CSSSCTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHH-HHGGGTTSSC
T ss_pred ccccCCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHH-HHHHHHhcCh
Confidence 111123457777775 7899999987642 24678999999999986 4454332211
Q ss_pred chhhhhHHhhhhcCceEEEEec-ceEEecCCHHHHHHHHHH
Q 009720 331 DFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMA 370 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~~~~-g~w~dIgt~~d~~~An~~ 370 (527)
.. +..+++.+++..+.++ ++|.||+||+||.+|+..
T Consensus 195 ~~----l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 195 IP----LSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp CC----HHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred hH----HHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 11 3334444567777776 689999999999988754
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=188.94 Aligned_cols=238 Identities=14% Similarity=0.216 Sum_probs=162.2
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
++.+||||||.||||. +|+|+|++|+ |||+|+++++.++|+++|+|++++ +++.+++. . ++
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAK-S-------FG-- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHH-H-------TT--
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHH-h-------cC--
Confidence 3689999999999994 3999999999 999999999999999999999975 45655553 2 22
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ecCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l--~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
++++...+ .+..|++ .+..+...+.. ...+.+++++||.. ...++.++++.|.+.++++++++.++
T Consensus 63 -~~~~~~~~-------~~~~g~~-~~~~~~~~l~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 63 -AEVCMTSV-------NHNSGTE-RLAEVVEKLAI---PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp -CEEEECCC-------SSCCHHH-HHHHHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred -CEEEECCc-------cccCChH-HHHHHHHHhcc---CCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 33333211 1234776 45555554431 13478999999983 35678999999988888888888887
Q ss_pred CCCC---CCCceEEEECCCCceEEEEecCCccccccc-------cccccccCCCccccccCCceeeeeEEEEeHHHHHHH
Q 009720 252 GESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAM-------QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (527)
Q Consensus 252 ~~~~---~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~-------~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~l 321 (527)
.++. ...++.+..|++|++..|.+++........ ..+ .| ..+..++|+|+|++++|..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~------~p-----~~~~~~~giy~~~~~~l~~~ 199 (262)
T 1vic_A 131 HDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQ------LS-----DAYLRHIGIYAYRAGFIKQY 199 (262)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCC------CC-----TTCEEEEEEEEEEHHHHHHH
T ss_pred CCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCccccccccccccc------cc-----cceEEEEEEEEeeHHHHHHH
Confidence 6520 123555556888999999987632110000 000 01 12678999999999988765
Q ss_pred HHhhCCCCCchhhhhHH--hhh-hcCceEEEEec-ceEEecCCHHHHHHHHHHhhccC
Q 009720 322 LRWRYPTSNDFGSEIIP--AAI-MEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 322 l~~~~~~~~d~~~dii~--~li-~~~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
... .+...+. .+++. .++ ...++.++..+ ++|.|||||+||..|+..+....
T Consensus 200 ~~~-~~~~~~~-~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~~ 255 (262)
T 1vic_A 200 VQW-APTQLEN-LEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANG 255 (262)
T ss_dssp HHS-CCCHHHH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTC
T ss_pred HhC-CCCchhh-hhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 332 1211111 11111 234 35799999998 79999999999999998876543
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=186.68 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=161.8
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHH-HHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPM-SNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l-~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
..+||||||.||||. +|+|+||+|+ |||+|++ +.+.++++++|+|+++. +.+.+++. . ++
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~-~-------~g-- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATDD--ERIAEICR-A-------EG-- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH-T-------TT--
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHH-H-------cC--
Confidence 469999999999995 4999999999 9999999 99999999999999964 66665553 2 22
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHc-CCcEEEEEEE
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~-~ad~tv~~~~ 250 (527)
++++...+. +..|| +++..++..+.. ...+.++++.||. +. ...+..+++.|.+. +.++..++.+
T Consensus 63 -~~v~~~~~~-------~~~Gt-~~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~ 130 (253)
T 4fcu_A 63 -VDVVLTSAD-------HPSGT-DRLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEP 130 (253)
T ss_dssp -CCEEECCTT-------CCCHH-HHHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEE
T ss_pred -CeEEEeCCC-------CCChH-HHHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEE
Confidence 223221111 12477 578888776641 1347899999999 44 45689999999876 3455544455
Q ss_pred cCC----CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC
Q 009720 251 VGE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (527)
Q Consensus 251 ~~~----~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~ 326 (527)
..+ .++..+ .|..|++|+++.|.++|-.........+ +......++.++|+|.|++++|..+... .
T Consensus 131 ~~~~~~~~~p~~~-kvv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~f~~~~l~~~~~~-~ 200 (253)
T 4fcu_A 131 IHALDEFQRDSIV-KVVMSKQNEALYFSRATIPYDRDGAKRD--------EPTLHTQAFRHLGLYAYRVSLLQEYVTW-E 200 (253)
T ss_dssp CCCHHHHHCTTSC-EEEECTTSBEEEEESSCCSCCTTTSSSS--------SCCCCSCCEEEEEEEEEEHHHHHHHTTS-C
T ss_pred cCCHHHccCCCcc-EEEECCCCeEEEecCCCCCCCCCccccc--------ccccccceeEEEEEEEeCHHHHHHHHhC-C
Confidence 432 123334 4678899999999998864321100000 0000124788999999999999876432 1
Q ss_pred CCCCchh-hhh---HHhhhhcCceEEEEecce-EEecCCHHHHHHHHHHhhcc
Q 009720 327 PTSNDFG-SEI---IPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMALTKE 374 (527)
Q Consensus 327 ~~~~d~~-~di---i~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~ll~~ 374 (527)
+ ..++ .|. +..+-...+|+++..+++ |.+||||+||.+|+..+.++
T Consensus 201 ~--~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 201 M--GKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp C--CHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred C--CcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 2 2222 233 333334579999999999 99999999999998766543
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=183.58 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=156.0
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
|.++.+||||||.||||++ ..+||+|+|++|+ |||+|+++++.+++ +++|+|++++......+.+.+.|...
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~---- 73 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISD---- 73 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCC----
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCC----
Confidence 3467899999999999986 5689999999999 99999999999997 99999999876554333333444211
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhc-CCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN-RNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITIS 247 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~-~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~ 247 (527)
..+.++... .+..++++.++..+.+... ...+.+|++.||. +....+.++++.|.+.++. +.
T Consensus 74 --~~~~~~~~~-----------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~--i~ 138 (246)
T 3f1c_A 74 --DRIVVIEGG-----------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV--DT 138 (246)
T ss_dssp --TTEEEEECC-----------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--EE
T ss_pred --CCEEEECCC-----------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--EE
Confidence 124544321 2678899999988863100 1247899999998 3456689999999887653 44
Q ss_pred EEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 248 ~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
+.++.+ .++..++++.+..+.+|+.. +..-..++|+.+.|.+.++....
T Consensus 139 ~~~~~d------~i~~~~~~~~v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~~~ 187 (246)
T 3f1c_A 139 VIEALD------TIVESSNHEVITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNLTP 187 (246)
T ss_dssp EEECSS------CEEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTSCH
T ss_pred EEeccc------eEEEecCCCeEEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHHHH
Confidence 555543 34555556666666555432 11224579999988777765321
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccC
Q 009720 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
....+.+|.+..+... .+|..+..+.+|.+|+||+||..|+..+..+.
T Consensus 188 ~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 188 EKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp HHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred cCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 1112345666555544 68999999989999999999999998876543
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=180.65 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=141.4
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCc-hhHHHHHHHhhccCCcccC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~~ 171 (527)
+|.+||||||.||||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+.+++ +.| + ..+.
T Consensus 2 m~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~-~~~-~--~~~~ 74 (236)
T 2vsh_A 2 MIYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLV-DKY-L--PLYK 74 (236)
T ss_dssp CEEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHH-HHH-C--GGGG
T ss_pred ceEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHH-Hhc-c--cccc
Confidence 37899999999999998 6789999999999 9999999999998 5999999999876 4454444 333 1 0110
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcC--CCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR--NIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITIS 247 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~--~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~ 247 (527)
..+..... . .|+.++++.++..+.+. .. ..+.++++.||+ +. ..++.++++.|.+.++ .++
T Consensus 75 -~~~~~~~~--~---------~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~ 139 (236)
T 2vsh_A 75 -ERIIITKG--G---------ADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDT 139 (236)
T ss_dssp -GGEEEEEC--C---------SSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEE
T ss_pred -CceEEECC--C---------CchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEE
Confidence 01222211 0 37889999998877421 01 236789999999 44 4578999999987654 344
Q ss_pred EEEcCCCCCCCceEEEECCCC-ceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC
Q 009720 248 CAAVGESRASDYGLVKIDNMG-RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (527)
Q Consensus 248 ~~~~~~~~~~~~g~v~~D~~g-~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~ 326 (527)
+.+..+ + +..+++| ++..+.|++.. ......|+|+++.|..+++...
T Consensus 140 ~~~~~~--~-----~~~~~~g~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~ 187 (236)
T 2vsh_A 140 VVEAVD--T-----IVESTNGQFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLS 187 (236)
T ss_dssp EEECCS--C-----EEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCC
T ss_pred EEeccc--c-----EEEeCCCCeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHH
Confidence 555543 2 2334667 77777665321 1112378999998876665322
Q ss_pred CCCCch-hhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 327 PTSNDF-GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 327 ~~~~d~-~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
.. ..+ ..+.+..+.. ..++..+..+++|.||+||+||..|+..+.
T Consensus 188 ~~-g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 188 DE-EKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp HH-HHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred hc-CCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 11 011 2233333333 367888888889999999999999987653
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=168.89 Aligned_cols=220 Identities=10% Similarity=0.051 Sum_probs=134.9
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
.+|.+||||||.||||++ ..||+|+|++|+ |||+|+++.+..++ +++|+|++++..+.+.+ +. .+ +
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~-~~-~------ 71 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQ-TA-F------ 71 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HH-HH-C------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HH-hc-C------
Confidence 347899999999999986 579999999999 99999999999985 99999999987766655 43 22 1
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhc-CCCCeEEEEcCcee-ec-CCHHHHHHHHHHcCCcEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN-RNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~-~~~e~~Lvl~gD~l-~~-~dl~~ll~~h~~~~ad~tv~~ 248 (527)
...++++. .. .|++++++.++..+.+... ...+.+++++||.. .. ..+.++++.|.+.+. ..+.+
T Consensus 72 ~~~i~~~~--~~---------~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~-~~~~~ 139 (231)
T 1vgw_A 72 PQVRVWKN--GG---------QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAE-GGILA 139 (231)
T ss_dssp TTSEEECC--CC---------SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTT-CEEEE
T ss_pred CCceEEEc--CC---------CcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCC-eEEEE
Confidence 01244432 11 3899999999887742000 02478999999983 33 458999998876542 23445
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+..+. +..+++|++....++ . ..+.....|+|+.+.|..+++.....
T Consensus 140 ~~~~~~-------~~~~~~g~i~~~~~~---~----------------------~~~~~~~p~~f~~~~l~~~~~~~~~~ 187 (231)
T 1vgw_A 140 VPVADT-------LKRAESGQISATVDR---S----------------------GLWQAQTPQLFQAGLLHRALAAENLG 187 (231)
T ss_dssp EECCSC-------EEEESSSBEEEEECC---T----------------------TEEEEEEEEEEEHHHHHHHHHC----
T ss_pred eecccc-------eEEeCCCceEecCCh---H----------------------HheeeeCCcEecHHHHHHHHHHHhhc
Confidence 554331 111245655533222 1 01122348999999887766543221
Q ss_pred CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHh
Q 009720 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~l 371 (527)
.......++... ..++..+..++.|.||+||+||..|+..+
T Consensus 188 g~~~~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 188 GITDEASAVEKL--GVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp CCCSHHHHHHTT--TCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred CCCcHHHHHHHc--CCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 101112222221 36788888777899999999999997654
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=172.85 Aligned_cols=216 Identities=15% Similarity=0.116 Sum_probs=146.5
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+.+||||||.|+||+ ||+|+|++|+ |||+|+++.+.+++ +++|+|+++. +++.+++. .+ +
T Consensus 5 ~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~-~~-------~-- 65 (228)
T 1ezi_A 5 NIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAK-NF-------G-- 65 (228)
T ss_dssp EEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHH-HT-------T--
T ss_pred eEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHH-Hc-------C--
Confidence 679999999999997 8999999999 99999999999998 7999999964 45544443 22 2
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
++++....... .+..|++++++.++..+. ...+.++++.||..+ ..++..+++.|.+.++++++.+.+.
T Consensus 66 -~~~~~~~~~~~----~~~~g~~~sv~~~l~~~~----~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 136 (228)
T 1ezi_A 66 -VEVVLRPAELA----SDTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPM 136 (228)
T ss_dssp -CEEEECCC----------CHHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEEC
T ss_pred -CEEEeCchHHc----CCCCChHHHHHHHHHHhC----CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 22221111000 012488999999988773 134789999999843 4568999998877777888888877
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCC-ccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPS-GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~-~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
.+. + ++...+|++|++..|.++.. .... +. ....+..++|+|+|+++.|...+
T Consensus 137 ~~~-p--~~~~~~~~~g~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~giy~~~~~~l~~~~-------- 190 (228)
T 1ezi_A 137 EHH-P--LKTLLQINNGEYAPMRHLSDLEQPR--------------QQ-LPQAFRPNGAIYINDTASLIANN-------- 190 (228)
T ss_dssp SSC-T--TSCEEECC--CEEESSCHHHHTCCG--------------GG-SCCEEEEEEEEEEEEHHHHHHHT--------
T ss_pred CCC-c--ceeeEEcCCCcEeeccccccccCCc--------------cc-CchhheeeeEEEEEeHHHHhhCC--------
Confidence 652 2 23333477888988876210 0000 00 00124567899999998775421
Q ss_pred chhhhhHHhhhhcCceEEEEec-ceEEecCCHHHHHHHHHHhhc
Q 009720 331 DFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~ 373 (527)
. ....++..+..+ .+|.||+||+||..|+..+.+
T Consensus 191 ~---------~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~ 225 (228)
T 1ezi_A 191 C---------FFIAPTKLYIMSHQDSIDIDTELDLQQAENILNH 225 (228)
T ss_dssp S---------SCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred c---------ccCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence 0 014567788876 579999999999999876643
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=171.56 Aligned_cols=215 Identities=16% Similarity=0.089 Sum_probs=149.0
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
+|.+||||||.||||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++...+. + +.++. + .
T Consensus 2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~---~-~~~~~-~--~-- 68 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDE---S-KLVFG-G--E-- 68 (223)
T ss_dssp CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHH---H-HHHTC-B--T--
T ss_pred ceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHH---H-HHHhc-c--C--
Confidence 3789999999999998 4589999999999 99999999999988 999999998865331 2 12221 1 1
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
.+.++.. . .+.+++++.++..++ ..+.++++.||+ +. ..++.++++.|. .+.+.++.+.+
T Consensus 69 -~v~~~~~--~---------~~~~~~i~~al~~~~-----~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~ 130 (223)
T 2xwl_A 69 -DSVIVSG--G---------VDRTESVALALEAAG-----DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLA 130 (223)
T ss_dssp -TEEEEEC--C---------SSHHHHHHHHHTTCT-----TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEEC
T ss_pred -CeEEEcC--C---------CCHHHHHHHHHHhcC-----CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEe
Confidence 2444431 1 267888988876552 246789999998 33 346899999883 34566776666
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
..+ +..+ .|++|++..+.|++.. ......|+|+++.+..+++... .
T Consensus 131 ~~d--~~~~----~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~---~ 176 (223)
T 2xwl_A 131 PAD--TIKA----VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT---A 176 (223)
T ss_dssp CSS--CEEE----ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC---S
T ss_pred ccc--ceEE----EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh---C
Confidence 654 2222 3778899888776421 1122358899988776654321 1
Q ss_pred chhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 331 DFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 331 d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
.+..+....+.. ..++..+..+++|.|||||+||..|+..+.+
T Consensus 177 ~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 177 GGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp CCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 223333333332 3678888888899999999999999877654
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=174.84 Aligned_cols=221 Identities=13% Similarity=0.085 Sum_probs=139.8
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
|+++.+||||||.|+||+ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++..+++.+++.. .+
T Consensus 2 ~~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~-------~~ 70 (228)
T 2yc3_A 2 EKSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE-------SI 70 (228)
T ss_dssp TTCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT-------TS
T ss_pred CcceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH-------hC
Confidence 346899999999999997 3579999999999 9999999999998 8999999999877665444421 12
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~ 248 (527)
+ ..++++... .|..++++.++..+++ ..+.++++.||. +. ...+..+++.|.+.++ ++.+
T Consensus 71 ~-~~v~~~~~~-----------~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~ 132 (228)
T 2yc3_A 71 D-VDLSFAIPG-----------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLG 132 (228)
T ss_dssp S-SEEEEECCC-----------SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred C-CcEEEECCC-----------CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEE
Confidence 1 124444311 3788999998876641 246788999997 44 4568999999877653 4555
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+..+. +..+|+++++..+.+++. .......|+|+.+.|.+.++.....
T Consensus 133 ~~~~~~------~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~ 181 (228)
T 2yc3_A 133 VPAKAT------IKEVNSDSLVVKTLDRKT-------------------------LWEMQTPQVIKPELLKKGFELVKSE 181 (228)
T ss_dssp EECCSC------CCCBCTTSCBCCCCSCCC-------------------------CEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred Eeccce------EEEEcCCCceEEecCccc-------------------------eEEEeCCcEEEHHHHHHHHHHHHhc
Confidence 554331 122344555543322111 1122348999988776655432111
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
. .+..+.+..+.+ ..++..+..+..|.||+||+||..|+..+..
T Consensus 182 ~-~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 226 (228)
T 2yc3_A 182 G-LEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE 226 (228)
T ss_dssp T-CCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred C-CCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhh
Confidence 1 122344444333 3567655555679999999999999876643
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-20 Score=192.97 Aligned_cols=259 Identities=12% Similarity=0.114 Sum_probs=130.3
Q ss_pred eEEEEcCceeecC--CHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECC--CCceEEEEecCCccccccccccccc
Q 009720 216 NVAILCGDHLYRM--DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN--MGRIAQFAEKPSGANLKAMQVDTSL 291 (527)
Q Consensus 216 ~~Lvl~gD~l~~~--dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~--~g~V~~~~EKp~~~~~~~~~v~~~~ 291 (527)
.=|+--|||+|+| +|.+++++|. .++.. .+++..||+..+|+ +++| .|.|||+....
T Consensus 12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~--------- 72 (374)
T 2iu8_A 12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH--------- 72 (374)
T ss_dssp ---------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH---------
T ss_pred cCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh---------
Confidence 4477789999998 8999999984 35543 33456799888874 4677 99999984321
Q ss_pred cCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchhhhhHHhhhhcCceEEEEecceEEec--CCHHHHHHHHH
Q 009720 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDI--GTIKSFYEANM 369 (527)
Q Consensus 292 ~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~~dii~~li~~~~V~~~~~~g~w~dI--gt~~d~~~An~ 369 (527)
...+++|+|+|+++++..+. +| .+++| ++.+...++|.+..+|++. .++.
T Consensus 73 -----------~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~~~~a~~~~~~~~~~~i~~~~------- 124 (374)
T 2iu8_A 73 -----------LKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSESPSLVFQKCLELFITPVDSGF------- 124 (374)
T ss_dssp -----------HHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSCHHHHHHHHHTTTSCCCCCSC-------
T ss_pred -----------hhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCCHHHHHHHHHHHhcccccccc-------
Confidence 14579999999999874211 12 34455 4444444444444445442 2210
Q ss_pred HhhccCCCCccCCCCCCCCCCCccCCCeeee-ceee------e-eeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEee
Q 009720 370 ALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRI------K-DAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKD 439 (527)
Q Consensus 370 ~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~i------~-~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~ 439 (527)
..-....++++.+.+...+.+.+++.|. ++.| . +++|+++|.|++ |.|. +++|+.+++||++|.|+.
T Consensus 125 ---~~i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~ 201 (374)
T 2iu8_A 125 ---PGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQP 201 (374)
T ss_dssp ---CSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECT
T ss_pred ---CccCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECC
Confidence 0001122334444444444444444443 2222 1 233333333331 2221 333333333333333332
Q ss_pred eEEeCCcccCc--hhh---------HHhhhcCCccceEeCCCcEEe-----------------eeEEcCCCEECCCcEEe
Q 009720 440 TVMLGADYYQT--ESE---------IASLLAEGKVPIGVGRNTKIR-----------------NCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 440 ~~i~~~~~~~~--~~~---------~~~~~~~~~~~~~Ig~~~~I~-----------------~~iI~~~~~Ig~~~~i~ 491 (527)
.+.++.+.|.. ..+ ....++++ +.||+|++|. ++.|++|++||+++.|.
T Consensus 202 ~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~---v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~ 278 (374)
T 2iu8_A 202 GAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDD---VEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIV 278 (374)
T ss_dssp TCEEEEECSCEEEETTTEEEECCCCCCEEECTT---CEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCEECcCCcccccccCCceeEeeeeccEEECCC---CEECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEEc
Confidence 22222110000 000 01122222 5555555553 25567788888888888
Q ss_pred CCCCcCCCccCCCceEEecCeE-----EEccCCEeCCCccC
Q 009720 492 NKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI 527 (527)
Q Consensus 492 ~~~~v~~~~~~~~~~~i~~g~~-----vi~~~~~I~~g~vi 527 (527)
+...+..++.+++++.|..+.. .||++|+|++|++|
T Consensus 279 ~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V 319 (374)
T 2iu8_A 279 AQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGV 319 (374)
T ss_dssp TTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEE
T ss_pred cCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCcee
Confidence 8877777777888877766643 35777777766653
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-20 Score=179.48 Aligned_cols=200 Identities=14% Similarity=0.115 Sum_probs=140.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+|.+||||||. |||++.+...||+|+|++|+ |||+|+++.+..+++ +|+|++.. +++ +.++ +
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~~--~~i-----~~~~------~-- 63 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGEN--PGL-----VPAP------A-- 63 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESCC--SSC-----SSCC------S--
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeCh--HHH-----hhhc------C--
Confidence 37899999999 88877766689999999999 999999999999998 88887643 333 2221 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
+++ .. ..|++++|+.++..++ +.|++++||+ +....+..+++ | +.++++++.+.+.
T Consensus 64 -~~~---~~---------~~g~~~~i~~a~~~~~-------~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~ 121 (232)
T 2dpw_A 64 -LTL---PD---------RGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPK 121 (232)
T ss_dssp -EEE---CC---------CSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEH
T ss_pred -eEe---cC---------CCCHHHHHHHHHHHcC-------CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeec
Confidence 444 11 2599999999876552 7899999999 44566899998 7 5667888877764
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhh-----C
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR-----Y 326 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~-----~ 326 (527)
++.. ..|+.+ .++|..+.||| .+++|+|+|++++|..+.+.. .
T Consensus 122 ~~~~-~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~~ 169 (232)
T 2dpw_A 122 EAVE-ARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVAL 169 (232)
T ss_dssp HHHH-HHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHHT
T ss_pred cchh-hhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHHh
Confidence 3210 123322 23577776653 257999999999875443311 1
Q ss_pred CC-------------------CCchhhhhHHhhhhc--CceEEEEec--ceEEecCCHHHHH
Q 009720 327 PT-------------------SNDFGSEIIPAAIME--HDVQAYIFR--DYWEDIGTIKSFY 365 (527)
Q Consensus 327 ~~-------------------~~d~~~dii~~li~~--~~V~~~~~~--g~w~dIgt~~d~~ 365 (527)
+. ...+..++++.++.. .++..+.++ +.|.|||||+||.
T Consensus 170 ~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 170 RKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp TTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred ccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 10 122345666665543 688888884 5799999999984
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=178.07 Aligned_cols=340 Identities=14% Similarity=0.155 Sum_probs=202.1
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC-CcchhHHHHHHHHHHc----CCC-EEEEEec-cCchhHHHHHHHhhc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQ-FNSASLNRHIARTYF 164 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~~----Gi~-~I~Iv~~-~~~~~i~~hl~~~y~ 164 (527)
..++.+||||||.||||+ ...||+|+||+ |+ ||++|+++.+... |.. .++|+++ +..+.+.+++.+ +
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~-~- 163 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKK-Y- 163 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGG-G-
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHh-c-
Confidence 577899999999999997 57899999999 99 9999999999877 543 4667776 778888888753 2
Q ss_pred cCCcccCCCeEEEeccccC---------------CC--CCCCCcccChHHHHHHH--HHHHHhhhcCCCCeEEEEcCcee
Q 009720 165 GNGTNFGDGFVEVLAATQT---------------PG--ESGKNWFQGTADAVRQF--TWVFEDAKNRNIENVAILCGDHL 225 (527)
Q Consensus 165 ~~~~~~~~~~V~vl~~~q~---------------~~--~~~~~~~~Gta~al~~a--~~~l~~~~~~~~e~~Lvl~gD~l 225 (527)
..|+. .+.++. |. .. ......+.|||++++.. ...++.+.....++++|++||+|
T Consensus 164 ---~~fg~-~i~~f~--Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL 237 (488)
T 2i5k_A 164 ---SANRI-RIRSFN--QSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNL 237 (488)
T ss_dssp ---CSSSC-EEEEEC--CCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBS
T ss_pred ---cccCc-eEEEEE--eCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcC
Confidence 12221 122221 11 00 00112346999999733 11233322235689999999998
Q ss_pred ec-CCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECCCCceEEEEe---cCCccccccccccccccCCCcccccc
Q 009720 226 YR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE---KPSGANLKAMQVDTSLLGFSPQEARK 301 (527)
Q Consensus 226 ~~-~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~~g~V~~~~E---Kp~~~~~~~~~v~~~~~~~~~~~~~~ 301 (527)
.. .|+. ++..|.+.++++++.+.+.+++ ...||.+..+ +|+ ..+.| .|..... .. + . ..
T Consensus 238 ~~~~d~~-~L~~~~~~~a~~t~~v~~~~~p-~~~yG~Iv~~-dG~-~~iVE~~e~~~e~~~-~~--~---------~-~~ 300 (488)
T 2i5k_A 238 GATVDLK-ILNHMIETGAEYIMELTDKTRA-DVKGGTLISY-DGQ-VRLLEVAQVPKEHID-EF--K---------N-IR 300 (488)
T ss_dssp SCCCCHH-HHHHHHHSCCSEEEEEEECCGG-GSSSCEEEEE-TTE-EEEECGGGSCTTSHH-HH--T---------C-TT
T ss_pred CCcccHH-HHHHHHhcCCcEEEEEEEecCC-CCceeEEEEE-CCc-EEEEEeccCCHHHHh-hc--c---------c-cc
Confidence 86 5775 6689999999999998877652 1349987664 566 44444 3332110 00 0 0 00
Q ss_pred CCceeeeeEEEEeHHHHHHHHHhhCCCC---------------------CchhhhhHHhhhhcCceEEEEec-ceEEecC
Q 009720 302 CPYVASMGVYVFKKDVLFKLLRWRYPTS---------------------NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIG 359 (527)
Q Consensus 302 ~~~l~~~GIYif~~~iL~~ll~~~~~~~---------------------~d~~~dii~~li~~~~V~~~~~~-g~w~dIg 359 (527)
.-...|+|+|+|+.+.|.++++...... +.|..++++.+ .+..++.++ .-+.-+-
T Consensus 301 ~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~---~~~~~~~V~R~~F~PvK 377 (488)
T 2i5k_A 301 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF---DGAHGVVVPRSRFLPVK 377 (488)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGS---SSCEEEEECGGGCCBCC
T ss_pred ccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhc---cCceEEEeccccccccc
Confidence 1245699999999999988887532110 11223333322 234445543 2356677
Q ss_pred CHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeec--eeeee--eEECCCCEEcceeEeecEEcCCcEECCCC
Q 009720 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISHGCFLRECTVEHSIVGERSRLDYGV 435 (527)
Q Consensus 360 t~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~--~~i~~--s~I~~g~~I~~~~i~~svIg~~~~I~~~~ 435 (527)
+..+++.+...+-.........++.. +..+ |-..+++ .++.+ ..+.....|-++ .+-.|--++..|.++
T Consensus 378 n~~~ll~~~~~~~~~~~g~~~~~~~~-~e~~----P~v~~~~~~~~~~~~~~rf~~~p~i~~~--~~l~v~Gdv~fg~~v 450 (488)
T 2i5k_A 378 TCSDLLLVKSDLFRLEHGSLKLDPSR-FGPN----PLIKLGSHFKKVSGFNARIPHIPKIVEL--DHLTITGNVFLGKDV 450 (488)
T ss_dssp SHHHHHHHTSTTEEEETTEEEECTTC-CSSC----CEEEECGGGSSHHHHHHHCSSCCBCTTE--EEEEEESSEEECTTC
T ss_pred CCccHHHHHHHHHHHhcCcEeecCCc-CCCC----CeEEECCcccchhhHHhhcCCCcccccc--ceEEEEeeeEEcCCc
Confidence 76666555443322111111111111 1111 2122221 11111 111121223222 345777788999999
Q ss_pred EEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEE
Q 009720 436 ELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (527)
Q Consensus 436 ~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~I 484 (527)
.+++++++.+. ..-++.|.+|++++|++|..|.+|
T Consensus 451 ~l~G~v~i~a~--------------~~~~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 451 TLRGTVIIVCS--------------DGHKIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp EEEEEEEEECC--------------TTCCEEECTTCEEEEEEEEEEEEE
T ss_pred EEEEEEEEEcC--------------CCCeEEeCCCCEEecceeeccccc
Confidence 99999888652 223489999999999998887776
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-17 Score=156.82 Aligned_cols=220 Identities=10% Similarity=0.105 Sum_probs=140.8
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
|.+|.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ + ..+
T Consensus 5 ~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~-~~~------- 71 (236)
T 1i52_A 5 HLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-L-PLA------- 71 (236)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-S-GGG-------
T ss_pred CCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-H-Hhc-------
Confidence 345899999999999997 3579999999999 99999999999887 89999999987655533 2 111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHHHHcCCcEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tv~~ 248 (527)
+...+.++... .|..++++.++..+. ..+.++++.||+.+ . ..+..+++.+.+.+++. +.+
T Consensus 72 ~~~~v~~~~~~-----------~g~~~~i~~al~~~~-----~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~ 134 (236)
T 1i52_A 72 NHPQITVVDGG-----------DERADSVLAGLKAAG-----DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILA 134 (236)
T ss_dssp GCTTEEEEECC-----------SSHHHHHHHHHHTST-----TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEE
T ss_pred CCCCEEEECCC-----------CCHHHHHHHHHHhcC-----CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEE
Confidence 11125444311 278889998876653 24789999999843 4 45788888776654332 334
Q ss_pred EEcCCCCCCCceEEEECCC-CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 249 AAVGESRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
.+..+. +...+++ |++....+. . ..+..-+.++|+.+.|..+++....
T Consensus 135 ~~~~~~------~~~~~~~~~~i~~~~~~---~----------------------~i~~~~~p~~f~~~~l~~~~~~~~~ 183 (236)
T 1i52_A 135 APVRDT------MKRAEPGKNAIAHTVDR---N----------------------GLWHALTPQFFPRELLHDCLTRALN 183 (236)
T ss_dssp EECCSC------EEEECTTSSSEEEEECC---T----------------------TCEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred Eecccc------EEEEcCCCCceeeccCh---H----------------------hheeeeCCceecHHHHHHHHHHHHh
Confidence 444321 1112444 455432211 0 0111225678888877666554322
Q ss_pred CCCchh--hhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhcc
Q 009720 328 TSNDFG--SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (527)
Q Consensus 328 ~~~d~~--~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~ 374 (527)
....+. ..++.. ...++..+..++.|.||+||+||..|+..+.++
T Consensus 184 ~g~~~td~~~~~~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 184 EGATITDEASALEY--CGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp TTCCCCSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred cCCCcccHHHHHHH--cCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 111111 122222 136788888778899999999999998876543
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=158.78 Aligned_cols=215 Identities=15% Similarity=0.174 Sum_probs=134.9
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
++.+||||||.||||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. . ++
T Consensus 3 ~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~-~-------~g- 64 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAK-Q-------FG- 64 (229)
T ss_dssp CEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHH-H-------TT-
T ss_pred cEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHH-H-------cC-
Confidence 4789999999999994 4999999999 99999999999998 699999994 456666553 2 22
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
++++....... . ...+..++|+.++..+. ..+.+++++||.-+ ..++..+++.|.+.+++.++.+.+
T Consensus 65 --~~~~~~~~~~~---~-~~~~~~~~v~~al~~~~-----~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~ 133 (229)
T 1qwj_A 65 --AQVHRRSSETS---K-DSSTSLDAIVEFLNYHN-----EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVR 133 (229)
T ss_dssp --CEEEECCGGGS---S-TTCCHHHHHHHHHTTCT-----TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred --CEEEeChhhhc---C-CCCcHHHHHHHHHHhcC-----CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEee
Confidence 23332111000 0 01244588888776552 24789999999843 456899999998888876665554
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
..+ +..+++ .| + +..|.+++...... ..+.......+..++|+|+|+++.| ++
T Consensus 134 ~~~--p~~~~v--~~--~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~n~giY~~~~~~l---~~------- 186 (229)
T 1qwj_A 134 RHQ--FRWSEI--QK--G-VREVTEPLNLNPAK----------RPRRQDWDGELYENGSFYFAKRHLI---EM------- 186 (229)
T ss_dssp ECC--CEECCC--CS--S-TTCCCCBSSSBTTB----------CCCTTTSCCEEEEEEEEEEEEHHHH---HT-------
T ss_pred ccC--hhHhhc--cc--c-cccccccccccccc----------ccCCCCCCceEEEeeEEEEEEHHHh---cc-------
Confidence 433 222322 22 2 21132211100000 0000000012567999999999887 11
Q ss_pred chhhhhHHhhhhcCceEEE-Eec-ceEEecCCHHHHHHHHHHhhc
Q 009720 331 DFGSEIIPAAIMEHDVQAY-IFR-DYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~-~~~-g~w~dIgt~~d~~~An~~ll~ 373 (527)
.+.....+ .+ ..+ ++|.||||++||..|+..+..
T Consensus 187 --------~~~~g~~~-~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 187 --------GYLQGGKM-AYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp --------TCSSCSSE-EEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred --------ccccCCeE-EEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 11122344 44 555 689999999999999887754
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=153.42 Aligned_cols=187 Identities=14% Similarity=0.173 Sum_probs=128.8
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+++.+++. . ++
T Consensus 5 ~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~-----~---~~-- 68 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVE-----L---DG-- 68 (199)
T ss_dssp CEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSC-----C---TT--
T ss_pred ceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhc-----c---CC--
Confidence 4789999999999996 69999999999 9999999999999999999999987666544432 1 12
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
++++.... +..|++++++.++..++ ...+.++++.||+.+ ...+..+++. +.++++++...
T Consensus 69 -~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~-- 131 (199)
T 2waw_A 69 -LDIVLVDD--------AGLGCSSSLKSALTWVD----PTAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY-- 131 (199)
T ss_dssp -SEEEECCC--------CCTTCCCHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE--
T ss_pred -CEEEECCC--------cccCHHHHHHHHHHhhh----ccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec--
Confidence 34443211 23589999999887663 124789999999955 4567888887 44555443221
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d 331 (527)
+ |+ +. .-++|+++.|..+.+ . .. +
T Consensus 132 -------------~--g~-------~~------------------------------~P~~~~~~~l~~~~~-~-~~--~ 155 (199)
T 2waw_A 132 -------------A--NG-------IG------------------------------HPFWVSRGVFGDLAE-L-HG--D 155 (199)
T ss_dssp -------------T--TE-------EE------------------------------EEEEEEGGGHHHHHT-C-SS--T
T ss_pred -------------C--Cc-------cc------------------------------CCEEEcHHHHHHHHh-c-CC--C
Confidence 0 10 00 014788888776542 1 11 1
Q ss_pred hhhhhHHhhhhc--CceEEEEe-cceEEecCCHHHHHHHHHHhh
Q 009720 332 FGSEIIPAAIME--HDVQAYIF-RDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 332 ~~~dii~~li~~--~~V~~~~~-~g~w~dIgt~~d~~~An~~ll 372 (527)
.. +..++++ .++..+.+ .++|.||+||+||..++..+.
T Consensus 156 ~~---~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~~ 196 (199)
T 2waw_A 156 KG---VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASVV 196 (199)
T ss_dssp TC---HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHHH
T ss_pred HH---HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHHh
Confidence 11 2333333 46888877 458999999999999987654
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=152.82 Aligned_cols=185 Identities=12% Similarity=0.161 Sum_probs=124.2
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+|.+||||||.|+||. .||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++. . ++
T Consensus 5 ~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~-----~---~~-- 68 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMA-----L---DG-- 68 (197)
T ss_dssp EEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSC-----C---TT--
T ss_pred ceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhc-----c---CC--
Confidence 4789999999999994 79999999999 9999999999999999999999987665544332 1 12
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-e-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
++++.... |..|++++++.++..+. ...+.++++.||+. . ...+.++++. +.++++++...
T Consensus 69 -~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~-- 131 (197)
T 2wee_A 69 -TDVVVVED--------VERGCAASLRVALARVH----PRATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY-- 131 (197)
T ss_dssp -SEEEECC------------CCHHHHHHHHTTSC----TTEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE--
T ss_pred -CEEEECCC--------cccCHHHHHHHHHHHhc----ccCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec--
Confidence 34443211 23599999999886652 12478999999994 3 4557888876 44444432211
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d 331 (527)
+|+ +. .-++|+++.|..+. .. . .+
T Consensus 132 ---------------~g~-------~~------------------------------~P~~~~~~~l~~l~-~~-~--~~ 155 (197)
T 2wee_A 132 ---------------ADG-------VG------------------------------HPFWFSRTVFGELA-RL-H--GD 155 (197)
T ss_dssp ---------------TTE-------EE------------------------------EEEEEEGGGHHHHH-TC-C--ST
T ss_pred ---------------CCC-------cC------------------------------CCEEECHHHHHHHH-hC-C--CC
Confidence 111 00 01378888876554 21 1 12
Q ss_pred hhhhhHHhhhhc--CceEEEEe-cceEEecCCHHHHHHHHHH
Q 009720 332 FGSEIIPAAIME--HDVQAYIF-RDYWEDIGTIKSFYEANMA 370 (527)
Q Consensus 332 ~~~dii~~li~~--~~V~~~~~-~g~w~dIgt~~d~~~An~~ 370 (527)
. -+..+++. .++..+.+ .++|.||+||+||..++..
T Consensus 156 ~---~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~ 194 (197)
T 2wee_A 156 K---GVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLES 194 (197)
T ss_dssp T---HHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC
T ss_pred h---hHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHH
Confidence 1 12344444 45777776 4589999999999988643
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-17 Score=153.69 Aligned_cols=131 Identities=20% Similarity=0.259 Sum_probs=93.8
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|++||||||.|+||+| .||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++.+.| . +. ..
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~-~----~~-~~ 69 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAY-K----DY-KN 69 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHT-T----TT-TE
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhc-c----CC-CC
Confidence 6899999999999987 89999999999 9999999999999999999999998888888886533 1 11 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ecCCHHHHHHHHHH-----cCCcEEEE
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVD-----RDADITIS 247 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l--~~~dl~~ll~~h~~-----~~ad~tv~ 247 (527)
+.++... ..|++++++.++..+ .+.++++.||+. ....+.++++.|.+ .+.+..+.
T Consensus 70 ~~~~~~~----------~~g~~~si~~al~~~-------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~ 132 (196)
T 3rsb_A 70 IVVIDTS----------GKGYIEDLNECIGYF-------SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAV 132 (196)
T ss_dssp EEE------------------CCCCCTTTTTC-------SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEE
T ss_pred EEEEECC----------CCCcHHHHHHHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEE
Confidence 4444321 147777887776444 378999999993 35678999999987 56666666
Q ss_pred EEEcCC
Q 009720 248 CAAVGE 253 (527)
Q Consensus 248 ~~~~~~ 253 (527)
+.+...
T Consensus 133 ~~p~~~ 138 (196)
T 3rsb_A 133 MIPKEK 138 (196)
T ss_dssp EEETTT
T ss_pred EEEccc
Confidence 666543
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-15 Score=145.98 Aligned_cols=216 Identities=13% Similarity=0.152 Sum_probs=137.2
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
-.+|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++....+ + +.++. +
T Consensus 11 ~~~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~---~-~~~~~----~ 78 (234)
T 1vpa_A 11 HHMNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEV---V-EKRVF----H 78 (234)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHH---H-HTTCC----C
T ss_pred cccCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHH---H-HHHhc----c
Confidence 456899999999999997 2479999999999 99999999999998 899999998865432 2 22221 1
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~ 248 (527)
.. .+... ... .+..++++.++..+++. ..+.+++++||. +.. ..+..+++.+.+.++ .+.+
T Consensus 79 ~~-~~~~~--~gg---------~~~~~sv~~al~~~~~~---~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~~ 141 (234)
T 1vpa_A 79 EK-VLGIV--EGG---------DTRSQSVRSALEFLEKF---SPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLA 141 (234)
T ss_dssp TT-EEEEE--ECC---------SSHHHHHHHHHHHHGGG---CCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred CC-ceEEe--CCC---------CcHHHHHHHHHHHhhhc---CCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEE
Confidence 11 12211 110 13778898888777420 235788888998 444 468899988876543 3444
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+..+ ++...|++| + .+.++.. .+..-..++|+.+.|..+++... .
T Consensus 142 ~~~~~------~~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~-~ 187 (234)
T 1vpa_A 142 LKNSD------ALVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENGG-E 187 (234)
T ss_dssp EECCS------EEEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTCC-C
T ss_pred EecCC------cEEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhcC-C
Confidence 44432 122335566 5 5544311 01111345889888876654311 0
Q ss_pred CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
..+ ...++.. ...++..+..++.|.||+||+||..|+..+.+
T Consensus 188 ~~~-~~~~~~~--~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 229 (234)
T 1vpa_A 188 WAD-DTEPVQK--LGVKIALVEGDPLCFKVTFKEDLELARIIARE 229 (234)
T ss_dssp CSS-SHHHHHT--TTCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred CCc-HHHHHHH--cCCcEEEEECCchhcCCCCHHHHHHHHHHHhc
Confidence 011 1122222 13567777767789999999999999876543
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=153.14 Aligned_cols=204 Identities=9% Similarity=0.020 Sum_probs=126.2
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+.+||||||.||||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++ .+. . +.. . .
T Consensus 26 ~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~---~~~-----~-~~~---~---~ 83 (236)
T 2px7_A 26 VSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPP---GAE-----P-PKG---L---G 83 (236)
T ss_dssp CEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECT---TCC-----C-CTT---C---S
T ss_pred eEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCH---HHH-----H-hhc---C---C
Confidence 5699999999999984 3 9999999999 999999999 6789999999985 111 1 111 1 1
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+.++.. . .|..++++.++..++ .+.+++++||+ +.. ..+..+++.+.+.+ ..+.+.+..
T Consensus 84 v~~~~~--~---------~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~ 144 (236)
T 2px7_A 84 AVFLEG--G---------ATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPVP 144 (236)
T ss_dssp CEEEEC--C---------SSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEECC
T ss_pred cEEEeC--C---------CchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEecC
Confidence 344321 1 267888988876653 36799999997 444 45788998886654 344444443
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~ 332 (527)
+ .. ...| +|++..+.++... .... ..++|+++.|..+++........+
T Consensus 145 ~--~~----~~~~-~G~v~~~~~~~~~------------------------~~~~-~~~~f~~~~l~~~~~~~~~~g~~~ 192 (236)
T 2px7_A 145 D--TL----MAPE-GEAYGRVVPREAF------------------------RLVQ-TPQGFFTALLREAHAYARRKGLEA 192 (236)
T ss_dssp S--EE----EEEC-SSSCEEEECGGGC------------------------EEEC-SCEEEEHHHHHHHHHHHHHHTCCC
T ss_pred C--cE----EEec-CCeEEecCChHhh------------------------cccc-CCeEEcHHHHHHHHHHHHhcCCCc
Confidence 2 11 1124 6787766543110 1112 256788887766554321111111
Q ss_pred --hhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 333 --GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 333 --~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
...++.. ...++..+..++.|.||+||+||..|+..+..
T Consensus 193 ~d~~~ll~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 193 SDDAQLVQA--LGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp SSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred hhHHHHHHH--cCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 1122222 13578888888889999999999999876654
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-15 Score=159.66 Aligned_cols=211 Identities=18% Similarity=0.237 Sum_probs=141.1
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceee---CCcchhHHHHHHHHHH--------cC----CCEEEEEeccCchhHH
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCIN--------SG----INKIFVLTQFNSASLN 156 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~--------~G----i~~I~Iv~~~~~~~i~ 156 (527)
..+|.+||||||.||||+ ...||+|+|| .|+ |+|++.++.+.. .| +..+++...+..+.+.
T Consensus 100 ~~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~ 175 (505)
T 1jv1_A 100 QNKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTK 175 (505)
T ss_dssp TTCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHH
T ss_pred cCceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHH
Confidence 367999999999999995 5799999999 799 999999999876 36 6666666677788888
Q ss_pred HHHHH-hhccCCcccCCCeEEEeccc-----cCCCC-------CCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEc
Q 009720 157 RHIAR-TYFGNGTNFGDGFVEVLAAT-----QTPGE-------SGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILC 221 (527)
Q Consensus 157 ~hl~~-~y~~~~~~~~~~~V~vl~~~-----q~~~~-------~~~~~~~Gta~al~~a~~--~l~~~~~~~~e~~Lvl~ 221 (527)
+|+.+ .||+-.. ..|.++... ...+. .....+.|||+.++.+.. .++++.....+.|+|++
T Consensus 176 ~~f~~~~~fGl~~----~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n 251 (505)
T 1jv1_A 176 EFFTKHKYFGLKK----ENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYC 251 (505)
T ss_dssp HHHHHTGGGGSCG----GGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEE
T ss_pred HHHHhhhhcCCCc----CceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEE
Confidence 88864 3344210 113222100 00000 001124699999876643 33333334568999999
Q ss_pred Ccee-ecCCHHHHHHHHHHcCCcEEEEEEE-cCCCCCCCceEEEECCCCc--eEEEEecCCccccccccccccccCCCcc
Q 009720 222 GDHL-YRMDYMDFIQSHVDRDADITISCAA-VGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQ 297 (527)
Q Consensus 222 gD~l-~~~dl~~ll~~h~~~~ad~tv~~~~-~~~~~~~~~g~v~~D~~g~--V~~~~EKp~~~~~~~~~v~~~~~~~~~~ 297 (527)
+|++ ...+...++..|.++++++++.+.+ ... ..++|++..+ +|+ ++++.|+|...... .+ +.
T Consensus 252 ~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~--~e~~Gvl~~~-dg~~~vvEy~E~p~~~~~~---~~-------~~ 318 (505)
T 1jv1_A 252 VDNILVKVADPRFIGFCIQKGADCGAKVVEKTNP--TEPVGVVCRV-DGVYQVVEYSEISLATAQK---RS-------SD 318 (505)
T ss_dssp TTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST--TCSCCEEEEE-TTEEEEECGGGSCHHHHHC---BC-------TT
T ss_pred CCccccccchHHHHHHHHHcCCCEEEEEEEccCC--ccCcceEEEE-CCeEEEEEEeeCCHHHhhh---cc-------cc
Confidence 9996 7777778999999999999999886 433 4578988764 455 45555665432100 00 00
Q ss_pred ccccCCceeeeeEEEEeHHHHHHHHHh
Q 009720 298 EARKCPYVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 298 ~~~~~~~l~~~GIYif~~~iL~~ll~~ 324 (527)
. ....+..|+|+|+|+.++|.++.+.
T Consensus 319 g-~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 319 G-RLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp S-SBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred c-ccccceeeEEEEEecHHHHHHHHHh
Confidence 0 0123678999999999999887653
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=142.39 Aligned_cols=217 Identities=15% Similarity=0.140 Sum_probs=145.5
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCc-hhHHHHHHHhhccCCcccC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~~ 171 (527)
++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.++ .+++|+|++++.. +.+.+++ ..
T Consensus 7 ~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~-----~~----- 72 (231)
T 3q80_A 7 EVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQIL-----GH----- 72 (231)
T ss_dssp CEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHH-----GG-----
T ss_pred ceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHh-----cC-----
Confidence 4789999999999996 3579999999999 9999999999988 4999999998765 2333222 11
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
.+.++... .+..++++.++..+.+. ...+.+|++.||. +. ...+..+++.+.+ +.+..+.+.
T Consensus 73 --~v~~v~gg-----------~~r~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~ 136 (231)
T 3q80_A 73 --RAMIVAGG-----------SNRTDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVL 136 (231)
T ss_dssp --GCEEEECC-----------SSHHHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEE
T ss_pred --CeEEEcCC-----------CchHHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEE
Confidence 13343211 13468888888766420 1146899999998 33 3457888888765 355677777
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~- 328 (527)
++.++ +...|++|+|....+. ..+ ..+.+ -|.|+.+.|.+.++.....
T Consensus 137 p~~dt------~~~~~~~g~v~~~~~r---~~l---------------------~~~qT-Pq~F~~~~L~~a~~~~~~~n 185 (231)
T 3q80_A 137 PLSDT------IKAVDANGVVLGTPER---AGL---------------------RAVQT-PQGFTTDLLLRSYQRGSLDL 185 (231)
T ss_dssp CCSSC------EEEECTTSBEEECCCG---GGE---------------------EEECS-CEEEEHHHHHHHHHHHTC--
T ss_pred eccCC------EEEEcCCCcEEEecch---hhe---------------------EEEcC-CcEEEHHHHHHHHHHHHhhc
Confidence 77652 1224677887665432 111 22333 4899999988877765432
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHh
Q 009720 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~l 371 (527)
...+.+|....+.. ..+|..+.-+..+..|+||+|+..|+..+
T Consensus 186 ~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 186 PAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp ---CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 11233554443333 36787777666689999999999998765
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=155.43 Aligned_cols=349 Identities=14% Similarity=0.145 Sum_probs=202.9
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeC-CcchhHHHHHHHHHHcCCC-----EEEEEe-ccCchhHHHHHH-H-hh
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINSGIN-----KIFVLT-QFNSASLNRHIA-R-TY 163 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~~Gi~-----~I~Iv~-~~~~~~i~~hl~-~-~y 163 (527)
+++.+||||||.||||+ ...||||+||+ |+ |++++.++++...|.. .++|.+ .+..+.+.+|+. + .|
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 47899999999999998 67999999999 99 9999999999988633 455555 455788888885 3 34
Q ss_pred ccCC---c-ccCCCeEEEecccc-C-----CCCCCCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeec-CCH
Q 009720 164 FGNG---T-NFGDGFVEVLAATQ-T-----PGESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR-MDY 230 (527)
Q Consensus 164 ~~~~---~-~~~~~~V~vl~~~q-~-----~~~~~~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~~-~dl 230 (527)
|+-. + -|.++.+..+.... . ........+.|||+++..+. ..++++.....++++|+++|++.. .|+
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~ 229 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK 229 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence 5431 1 12222222222111 0 00001123469999987541 112322224568999999999884 577
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEEC------CCCc-------e--EEEEecCCccccccccccccccCCC
Q 009720 231 MDFIQSHVDRDADITISCAAVGESRASDYGLVKID------NMGR-------I--AQFAEKPSGANLKAMQVDTSLLGFS 295 (527)
Q Consensus 231 ~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D------~~g~-------V--~~~~EKp~~~~~~~~~v~~~~~~~~ 295 (527)
.|+..|.++++++++.+.+...+. ..+|++..+ .+|+ + .++.|-|..... +. + +.
T Consensus 230 -~llg~~~~~~ad~~~~v~~k~~~d-~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~-~~---~---g~- 299 (505)
T 2oeg_A 230 -RVLAYMEKEKIDFLMEVCRRTESD-KKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADME-SF---Q---DI- 299 (505)
T ss_dssp -HHHHHHHHHTCSEEEEEEECCTTC-CSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHH-HH---H---CT-
T ss_pred -HHHHHHHhcCCcEEEEEEEecCCc-cceeEEEEecccccccCCccccccCceeEEEeccCChhhhh-cc---c---Cc-
Confidence 999999999999999998877632 368888763 4566 3 333333332110 00 0 00
Q ss_pred ccccccCCceeeeeEEEEeHHHHHHHHHhhC-----CC-----C--------------CchhhhhHHhhhhcCceEEEEe
Q 009720 296 PQEARKCPYVASMGVYVFKKDVLFKLLRWRY-----PT-----S--------------NDFGSEIIPAAIMEHDVQAYIF 351 (527)
Q Consensus 296 ~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~-----~~-----~--------------~d~~~dii~~li~~~~V~~~~~ 351 (527)
..-.+.++....|+-+.+.++++... +. . +.|..++++.+ .++.++.+
T Consensus 300 -----~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~---~~~~~~~V 371 (505)
T 2oeg_A 300 -----NKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMF---ESASAIVV 371 (505)
T ss_dssp -----TTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSC---TTCEEEEC
T ss_pred -----cccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhc---CcceEEEe
Confidence 01234789999999999988877621 10 0 01122333221 23445555
Q ss_pred cc-eEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeec---eeeee--eEECCC-CEEcceeEeecE
Q 009720 352 RD-YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN---CRIKD--AIISHG-CFLRECTVEHSI 424 (527)
Q Consensus 352 ~g-~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~---~~i~~--s~I~~g-~~I~~~~i~~sv 424 (527)
+- -+.-+-+..|+..+..++........+......+. ..|.+.+++ ..+.+ ..+..| ..|.++ .+-+
T Consensus 372 ~R~~FsPvKn~~dl~~~~sdly~~~~~~~~~~~~~~~~----~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~~--~~L~ 445 (505)
T 2oeg_A 372 PRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHG----HPPVVDLDSAHYKMMNGFEKLVQHGVPSLVEC--KRVT 445 (505)
T ss_dssp CGGGCCCCSSHHHHHHHHSTTEEECTTCCEEECGGGTT----CCCEEEECHHHHSSHHHHHHHSTTCCCBCTTE--EEEE
T ss_pred ccceeecccCCCCHHHHHHHHHhhcCCceEEEcccccC----cCCeEEEChhHcCcHHHHHHhcCCCCCccccC--cEEE
Confidence 32 35677788888888777665433111110000001 112223332 11111 223333 233332 2345
Q ss_pred EcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCC
Q 009720 425 VGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (527)
Q Consensus 425 Ig~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~ 482 (527)
|--.+..+.++.+++++++.+. ...-++.|.+|++++|..|....
T Consensus 446 v~G~~~f~~~v~l~G~v~i~a~-------------~~~~~~~ip~g~~l~n~~~~~~~ 490 (505)
T 2oeg_A 446 VKGLVQFGAGNVLTGTVTIENT-------------DSASAFVIPDGAKLNDTTASPQQ 490 (505)
T ss_dssp EESSEECCTTCEEEEEEEEECC-------------SCSSCEECCTTCEEESCEECC--
T ss_pred EEcceEEccCcEEEEEEEEEec-------------CCCCcEEeCCCCEEeCceechhh
Confidence 6666778889999888888751 01223788888888888777654
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=144.38 Aligned_cols=180 Identities=11% Similarity=0.073 Sum_probs=112.5
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|.++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++... ++ +. +
T Consensus 12 ~~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~-----~~-----~ 71 (201)
T 2e8b_A 12 SKVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FS-----FL-----N 71 (201)
T ss_dssp CSCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GG-----GG-----T
T ss_pred ccCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hh-----cC-----C
Confidence 345789999999999997 79999999999 9999999999988 9999999987643 11 11 1
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHH-HHHHHHHcCCcEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMD-FIQSHVDRDADITISC 248 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~-ll~~h~~~~ad~tv~~ 248 (527)
++++.... +..|++++|+.++..+. .+.+++++||+.+ ..+ +.. ++ +.++++.
T Consensus 72 ---~~~v~~~~--------~~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~- 127 (201)
T 2e8b_A 72 ---APVVLDEF--------EESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS- 127 (201)
T ss_dssp ---CCEEECCC--------SSCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE-
T ss_pred ---ceEEecCC--------CCCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE-
Confidence 33333221 22599999999987663 4789999999954 333 455 54 1222110
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+ +|+ .....|+| |+++++..+.+....
T Consensus 128 ---------------~~-~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~- 155 (201)
T 2e8b_A 128 ---------------VA-KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIKK- 155 (201)
T ss_dssp ---------------EE-ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHT-
T ss_pred ---------------ec-CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHHc-
Confidence 00 010 12467999 999977644321111
Q ss_pred CCchhhhhHHhhhhcCceEEEEec--ceEE--ecCCHHHHHHHHHHh
Q 009720 329 SNDFGSEIIPAAIMEHDVQAYIFR--DYWE--DIGTIKSFYEANMAL 371 (527)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~~~~~--g~w~--dIgt~~d~~~An~~l 371 (527)
......++++ ..++..+.++ +.|. |||||+||.+++..+
T Consensus 156 g~~~~~~~l~----~~~~~~~~~~~~~~~~~~dintpedl~~~~~~~ 198 (201)
T 2e8b_A 156 GDYRIWALLK----DVGYNEVEIPEELRYTLLNMNTKEDLKRILAIE 198 (201)
T ss_dssp TCCCHHHHHH----HHCCEEEECCGGGGGGGCCSCCC----------
T ss_pred CCchHHHHHH----HCCeEEeccccccchhhcCCCCHHHHHHHHHHh
Confidence 1122344443 3356677774 4689 999999999886543
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-14 Score=134.68 Aligned_cols=111 Identities=11% Similarity=0.119 Sum_probs=82.8
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|.++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++++..+.+ . . ++
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~-~-------~~ 65 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIY----Q-A-------SG 65 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHH----H-T-------TS
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHH----h-h-------cC
Confidence 346899999999999997 379999999999 999999999984 5899999998865322 1 1 12
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eecCC-HHHHHHH
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQS 236 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~ 236 (527)
++++...... +.|++++|+.++..+. .+.++++.||+ +...+ +..+++.
T Consensus 66 ---~~~v~~~~~~-------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 66 ---LKVIEDSLAD-------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp ---CCEECCCTTC-------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred ---CeEEecCCCC-------CCCHHHHHHHHHHhCC------CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 3334322110 1489999999887763 47899999999 44544 6777765
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=136.68 Aligned_cols=184 Identities=13% Similarity=0.172 Sum_probs=112.0
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +|+|++++..+.+ +.++. .+
T Consensus 3 ~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~-----~~~~~----~~--- 61 (197)
T 3d5n_A 3 IGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEM-----LPLLM----DQ--- 61 (197)
T ss_dssp EEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHH-----GGGCT----TS---
T ss_pred eEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHH-----HHHhc----CC---
Confidence 789999999999997 39999999999 9999999999877 8889998864433 23322 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+ ++... .|..|++++|+.++..+. ..+.+++++||+ +.. ..+..+++.+ +.++++++...
T Consensus 62 ~-~v~~~--------~~~~G~~~si~~al~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~--- 123 (197)
T 3d5n_A 62 I-VIYNP--------FWNEGISTSLKLGLRFFK-----DYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH--- 123 (197)
T ss_dssp C-EEECT--------TGGGCHHHHHHHHHHHTT-----TSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE---
T ss_pred E-EEECC--------CCCCCHHHHHHHHHHhhc-----cCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe---
Confidence 3 33221 133699999999987774 236899999999 444 4478888776 44555433321
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~ 332 (527)
+ |+ +.. + .+|+++.+..+.. . ....+
T Consensus 124 ------------~--g~-------~~~-----------------------P-------~~~~~~~l~~l~~-l-~g~~~- 149 (197)
T 3d5n_A 124 ------------K--GE-------RGN-----------------------P-------VLISKSLFNEIEK-L-RGDVG- 149 (197)
T ss_dssp ------------T--TE-------ECS-----------------------C-------EEEEHHHHHHHHH-C-CTTCC-
T ss_pred ------------C--Cc-------ccC-----------------------C-------EEECHHHHHHHHc-c-CCCcc-
Confidence 0 10 000 1 2788888876542 2 21111
Q ss_pred hhhhHHhhhhcCceEEEEec--ceEEecCCHHHHHHHHHHhhc
Q 009720 333 GSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 333 ~~dii~~li~~~~V~~~~~~--g~w~dIgt~~d~~~An~~ll~ 373 (527)
...++... ..++..+..+ +.|.||+||+||..++..+..
T Consensus 150 ~~~~l~~~--~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~~ 190 (197)
T 3d5n_A 150 ARVILNKI--KIEELCFIECSEGVLIDIDKKEDLMRLRDFHPL 190 (197)
T ss_dssp THHHHTTS--CGGGEEEEECCGGGTCCTTTC------------
T ss_pred HHHHHHhC--ccCeEEEEcCCCCcccCCCCHHHHHHHHHhhcc
Confidence 12222211 1356677764 478999999999988765543
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-15 Score=144.70 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=66.6
Q ss_pred hcCceEEEEecce----EEecCCHHHHHHHHHHhhccCCC-----CccCCCCCCCCCCCccCCCeeeeceeeeeeEECCC
Q 009720 342 MEHDVQAYIFRDY----WEDIGTIKSFYEANMALTKESPA-----FHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHG 412 (527)
Q Consensus 342 ~~~~V~~~~~~g~----w~dIgt~~d~~~An~~ll~~~~~-----~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g 412 (527)
...++++|.+.+| |.|+++ |+++|..+++.... .............+.+.|++.|.+ ++.||++
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~----~v~Ig~~ 109 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRD----HVEIGDN 109 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBS----SCEECTT
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECC----CcEECCC
Confidence 3456677666666 888877 88888877644210 000000001111233333333332 4555555
Q ss_pred CEEc-ceeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee---------eEEcCC
Q 009720 413 CFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKN 481 (527)
Q Consensus 413 ~~I~-~~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~---------~iI~~~ 481 (527)
|.|+ ++.| .+++||++|.|+.+|.|.+.+.+|.+ +.||+++.|.+ ++||++
T Consensus 110 ~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~~~i~~~~~~~~~~~~~Ig~~ 171 (240)
T 3r8y_A 110 AVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKN------------------CHVGAGAVLAGVIEPPSAKPVIVEDD 171 (240)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECCCCSCTTSCCCEECTT
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCC------------------cEECCCcEECCCccCCCCCCcEECCC
Confidence 5554 2333 34566666666666666533333333 66666666655 666677
Q ss_pred CEECCCcEEeCC
Q 009720 482 VKIGKDVVIVNK 493 (527)
Q Consensus 482 ~~Ig~~~~i~~~ 493 (527)
+.||.+++|...
T Consensus 172 ~~IG~~~~I~~~ 183 (240)
T 3r8y_A 172 VVIGANVVVLEG 183 (240)
T ss_dssp CEECTTCEECTT
T ss_pred CEECCCCEECCC
Confidence 777766666544
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-12 Score=133.39 Aligned_cols=209 Identities=12% Similarity=0.118 Sum_probs=143.7
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceee---CCcchhHHHHHHHHHH-------------cCCCEEEEEeccCchhHH
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCIN-------------SGINKIFVLTQFNSASLN 156 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~-------------~Gi~~I~Iv~~~~~~~i~ 156 (527)
.++.+|+||||.||||+ ...||+|+|| .|+ |++++.++.+.+ .+|.-+++...+..+.+.
T Consensus 34 gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 67899999999999995 4799999999 899 999999988864 467766666677788888
Q ss_pred HHHHH-hhccCCcccCCCeEEEec-----cccCCC-------CCCCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEc
Q 009720 157 RHIAR-TYFGNGTNFGDGFVEVLA-----ATQTPG-------ESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILC 221 (527)
Q Consensus 157 ~hl~~-~y~~~~~~~~~~~V~vl~-----~~q~~~-------~~~~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~ 221 (527)
+|+.+ .||+... ..|.++. .....+ ......+.|+++..+... ..++++...+.+.+++.+
T Consensus 110 ~~f~~~~~fGl~~----~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~n 185 (405)
T 3oc9_A 110 NYFKEHQYFGLSS----EQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHN 185 (405)
T ss_dssp HHHHHTGGGGSCT----TSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEC
T ss_pred HHHHhCcccCCCc----cceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 88864 3455321 1122211 000000 000112368988777543 235555556778999999
Q ss_pred Cce-eecCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEE-ECCCCceEEEEecCCccccccccccccccCCCcccc
Q 009720 222 GDH-LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (527)
Q Consensus 222 gD~-l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~ 299 (527)
.|+ |.......|+..|.++++++++-+.+...+. .+.|++. .|...+|.++.|.|.. .. .-..+.
T Consensus 186 vDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~d-ek~Gvl~~~dg~~~vvEysei~~e-~e-~~~~~g---------- 252 (405)
T 3oc9_A 186 VDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKE-EKVGVLVKEQERIKVVEYTELTDE-LN-KQLSNG---------- 252 (405)
T ss_dssp TTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEEETTEEEEECGGGCCTT-TT-CBCTTS----------
T ss_pred CCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCC-CccceEEEECCeeEEEEEeeCCHH-Hh-hcCCCC----------
Confidence 999 8888888999999999999999998876531 4578765 4555578888887765 21 101110
Q ss_pred ccCCceeeeeEEEEeHHHHHHHH
Q 009720 300 RKCPYVASMGVYVFKKDVLFKLL 322 (527)
Q Consensus 300 ~~~~~l~~~GIYif~~~iL~~ll 322 (527)
...-+..|.++++|+.++|.+++
T Consensus 253 ~l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 253 EFIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp CBSSCEEEEEEEEEEHHHHHHHT
T ss_pred ceeeccceeEeeecCHHHHHHhh
Confidence 01235678999999999998775
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=139.90 Aligned_cols=217 Identities=17% Similarity=0.250 Sum_probs=143.2
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc--------C------CCEEEEEeccCchhH
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------G------INKIFVLTQFNSASL 155 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~--------G------i~~I~Iv~~~~~~~i 155 (527)
.+|.+||||||.||||. ...||+|+||+ |+ |++++.++.+... | |..+++...+..+.+
T Consensus 102 gkvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccCC---CCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 57999999999999994 67999999999 99 9999999999886 6 777878888888889
Q ss_pred HHHHHH-hhccCCcc----cCCCeEEEecccc--CC---CCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCc
Q 009720 156 NRHIAR-TYFGNGTN----FGDGFVEVLAATQ--TP---GESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGD 223 (527)
Q Consensus 156 ~~hl~~-~y~~~~~~----~~~~~V~vl~~~q--~~---~~~~~~~~~Gta~al~~a~~--~l~~~~~~~~e~~Lvl~gD 223 (527)
.+|+.+ .||+-... |.++.+..+..+. -. .......+.|+|+.++.... .++++...+.+.+.+.+.|
T Consensus 178 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vD 257 (486)
T 2yqc_A 178 ESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVD 257 (486)
T ss_dssp HHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETT
T ss_pred HHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCC
Confidence 899864 34553221 1122222221110 00 00000124699998865532 3444444578899999999
Q ss_pred eeec--CCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECC-CC--ceEEEEecCCccccccccccccccCCCccc
Q 009720 224 HLYR--MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298 (527)
Q Consensus 224 ~l~~--~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~-~g--~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~ 298 (527)
.+.- .| ..|+..|.++++++++-+.+...+ ..+.|++...+ +| +|+++.|+|...... .+.+ .+.
T Consensus 258 N~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~---~~~~----~~~- 327 (486)
T 2yqc_A 258 NCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQDNQKPCVIEYSEISQELANK---KDPQ----DSS- 327 (486)
T ss_dssp BTTCCTTC-HHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEETTTTEEEEECGGGSCHHHHHC---EETT----EEE-
T ss_pred CceeeccC-HHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEecCCCEEEEEEecCCHHHhhc---cccc----ccc-
Confidence 7553 34 468889999999999988876442 24578776431 45 478888887532110 0000 000
Q ss_pred cccCCceeeeeEEEEeHHHHHHHHHh
Q 009720 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 299 ~~~~~~l~~~GIYif~~~iL~~ll~~ 324 (527)
....+..|+|+|+|+.++|.++++.
T Consensus 328 -~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 328 -KLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp -EESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred -cccccceeEEEEEEeHHHHHHHHHh
Confidence 0123678999999999999875554
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-14 Score=154.24 Aligned_cols=110 Identities=10% Similarity=0.068 Sum_probs=83.5
Q ss_pred cCCCeeeec-eee-eeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 393 FLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 393 ~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.+++.|++ +.+ .++.||++|+|++ +.|.+++||++|.|+++|+|.+++++.+ +.||+
T Consensus 276 I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~-------------------~~Ig~ 336 (496)
T 3c8v_A 276 SASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN-------------------CVTAH 336 (496)
T ss_dssp CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEES-------------------CEECT
T ss_pred cCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCC-------------------CEECC
Confidence 344444533 333 3788888888884 7788899999999999999999888877 89999
Q ss_pred CcEEeeeEEcCCCEECCCcEEeCC----CCcCCCccCCCceEEe--cCeEEEccCCEeC
Q 009720 470 NTKIRNCIIDKNVKIGKDVVIVNK----DDVQEADRPELGFYIR--SGITIIMEKATIE 522 (527)
Q Consensus 470 ~~~I~~~iI~~~~~Ig~~~~i~~~----~~v~~~~~~~~~~~i~--~g~~vi~~~~~I~ 522 (527)
++.|.+|+||++|.||.+++|.+. ..+++++.++.++.|. .| ..|++++.++
T Consensus 337 ~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~-~~I~~~s~v~ 394 (496)
T 3c8v_A 337 GGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEP-LEIPAGHLVW 394 (496)
T ss_dssp TCEEESEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSC-EEECSSEEEC
T ss_pred CcEEcCceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCC-cEeCCCCEEE
Confidence 999999999999999999999987 5555555555555554 44 3335555544
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=132.17 Aligned_cols=139 Identities=17% Similarity=0.280 Sum_probs=98.9
Q ss_pred HHHHHHHhhccCCC--CccCCCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcc-eeEe-----ecEEcCCcEECCCC
Q 009720 364 FYEANMALTKESPA--FHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTVE-----HSIVGERSRLDYGV 435 (527)
Q Consensus 364 ~~~An~~ll~~~~~--~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~-----~svIg~~~~I~~~~ 435 (527)
..++|+.++.+.|. |.+++....+.+.+.+.|++.|.+ ++.||++|+|++ +.|. +++||++|.|+++|
T Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~I~~~~~I~~~a~I~g----~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~ 112 (247)
T 1qre_A 37 ITVDEFSNIRENPVTPWNPEPSAPVIDPTAYIDPQASVIG----EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGV 112 (247)
T ss_dssp -CCCCCCSEECCCCBTTBSSCCCCEECTTCEECTTCEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTC
T ss_pred chhhhhhhccCCCCccccccCCCcEECCCcEECCCCEEeC----CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCe
Confidence 34456665554433 556666667777777777777642 455555555553 3343 44899999999999
Q ss_pred EEeee-----------------------EEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-eEEcCCCEECCCcEEe
Q 009720 436 ELKDT-----------------------VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIV 491 (527)
Q Consensus 436 ~I~~~-----------------------~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~ 491 (527)
.|... +++|++ +.||+++.|.+ |+||+++.||.+++|.
T Consensus 113 ~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~------------------v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~ 174 (247)
T 1qre_A 113 VLHALETINEEGEPIEDNIVEVDGKEYAVYIGNN------------------VSLAHQSQVHGPAAVGDDTFIGMQAFVF 174 (247)
T ss_dssp EEEECCSBCTTSCBCGGGCEEETTEEESEEECTT------------------CEECTTCEEEEEEEECTTCEECTTCEEE
T ss_pred EEEecccccccCcccccceeeccCccCceEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEe
Confidence 99753 444443 89999999988 9999999999999998
Q ss_pred CCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 492 NKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 492 ~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+ ..+++++.++.++.| .| +.|+++++|++|+++
T Consensus 175 ~-v~Ig~~~~IgagsvV-~~-~~I~~~~~v~~g~vv 207 (247)
T 1qre_A 175 K-SKVGNNCVLEPRSAA-IG-VTIPDGRYIPAGMVV 207 (247)
T ss_dssp E-EEECTTCEECTTCEE-ES-CEECTTBEECTTCEE
T ss_pred c-eEECCCCEECCCCEE-CC-eEeCCCCEECCCCEE
Confidence 8 777777777777777 54 445888888888764
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=121.91 Aligned_cols=115 Identities=13% Similarity=0.173 Sum_probs=82.5
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +|+|++++ .+.+ +.+.+. ++
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~-~~~~~~-------~~--- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQA-EKLSSR-------YE--- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHH-HHHHTT-------SC---
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHH-HHHHHh-------cC---
Confidence 689999999999996 79999999999 9999999999877 99999974 2222 233211 22
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eecC-CHHHHHHHHHHcCCcEEE
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITI 246 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tv 246 (527)
+.++..... -.|...+|+.++..+ . +.+ ++.||+ +... .+..+++.+.+.++++++
T Consensus 60 ~~~v~d~~~--------~~G~~~si~~gl~~~-~------~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 60 AEFIWDLHK--------GVGSIAGIHAALRHF-G------SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp SCEECCTTC--------CCSHHHHHHHHHHHH-S------SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CeEEecCCC--------CCChHHHHHHHHHHc-C------CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 334432221 148889999988766 2 678 999999 3344 468888877665666543
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.9e-13 Score=137.61 Aligned_cols=196 Identities=14% Similarity=0.107 Sum_probs=124.0
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHH-cCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+.+ +.+...
T Consensus 3 ki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i-----~~~~~~------ 66 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYM-----KKFTKN------ 66 (371)
T ss_dssp CEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHH-----HTTCSS------
T ss_pred ccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHH-----HHHhCC------
Confidence 4789999999999997 3479999999999 999999999998 58999999998 43322 223211
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ec-CCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~~-~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
++++. .. .|..++++.++..++ .+.++++.||.- .. ..+..+++.+.+. +..+.+.+
T Consensus 67 --v~~v~--~g---------~g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~~~ 125 (371)
T 1w55_A 67 --YEFIE--GG---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALK 125 (371)
T ss_dssp --SEEEE--CC---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEEC
T ss_pred --CEEEe--CC---------CChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEEEE
Confidence 33431 11 377889988876553 478999999983 33 4578888877654 34454544
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceee-eeEEEEeHHHHHHHHHhhCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~-~GIYif~~~iL~~ll~~~~~~~ 329 (527)
+.+. ++. + .+.+... .+.. -.-+.|+.+.|..+++... ..
T Consensus 126 ~~d~-------vk~-----v---~~t~~r~-----------------------~l~~~~~P~~f~~~~l~~~~~~~~-~~ 166 (371)
T 1w55_A 126 VADT-------TLF-----D---NEALQRE-----------------------KIKLIQTPQISKTKLLKKALDQNL-EF 166 (371)
T ss_dssp CCSC-------EEE-----T---TEEECGG-----------------------GCCEECSCEEEEHHHHHHHTSSCC-CC
T ss_pred eecC-------eee-----e---eeecCcc-----------------------ceeecCCcceecHHHHHHHHHhcc-cc
Confidence 4331 110 0 0111110 0011 1125788887766543221 01
Q ss_pred CchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHH
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An 368 (527)
.+ ...++.. ...++..+..++.|.||+||+||..|+
T Consensus 167 td-~~~ll~~--~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 167 TD-DSTAIAA--MGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp SS-HHHHHHT--TTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred cC-HHHHHHh--CCCcEEEEECCccccCCCCHHHHHHHH
Confidence 11 1122221 135788887777899999999998886
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-12 Score=131.10 Aligned_cols=47 Identities=4% Similarity=-0.107 Sum_probs=26.9
Q ss_pred eEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeee
Q 009720 354 YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID 400 (527)
Q Consensus 354 ~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~ 400 (527)
.|.-+.+|...+.....+..+.+....++|.+.+.+++.+.+++.|.
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I~ 124 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYIG 124 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEECTTCEEC
T ss_pred cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEECCCCEEC
Confidence 35567788876655555555443335556666666555555555543
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-11 Score=126.02 Aligned_cols=61 Identities=7% Similarity=0.045 Sum_probs=33.8
Q ss_pred EecCCHHHHHHHHHHhhccC-CCCccCCCCCCCCCCCccCCCeeeec-eeee-eeEECCCCEEc
Q 009720 356 EDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR 416 (527)
Q Consensus 356 ~dIgt~~d~~~An~~ll~~~-~~~~~~~~~~~i~~~~~~~~p~~i~~-~~i~-~s~I~~g~~I~ 416 (527)
.-+.+|...+.-...+.... .....++|.+.+..++.+.+++.|.. +.|. ++.||++|+|+
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~ 137 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIG 137 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEEC
Confidence 34577777666555555443 33345666666666666666666542 4442 34444444444
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-11 Score=122.15 Aligned_cols=143 Identities=10% Similarity=0.148 Sum_probs=68.5
Q ss_pred cCCCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEee------------eEEe
Q 009720 380 FYDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKD------------TVML 443 (527)
Q Consensus 380 ~~~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~------------~~i~ 443 (527)
.++|.+.+.+.+.+.+.+.|.+ |.| .++.||++|+|++ +.|. ++.||++|+|+++|.|.. .+.+
T Consensus 24 ~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~I 103 (283)
T 4eqy_A 24 RIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVI 103 (283)
T ss_dssp CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEE
T ss_pred ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEE
Confidence 3444554544444444444432 444 3566667776663 4553 577777777777777732 2233
Q ss_pred CCc-ccCchhhHH---------hhhcCCccceEeCCCcEE-eeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe
Q 009720 444 GAD-YYQTESEIA---------SLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI 512 (527)
Q Consensus 444 ~~~-~~~~~~~~~---------~~~~~~~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~ 512 (527)
+++ .+.....+. +.++++ +.|+.++.| ++|+||+++.|+.++.|.+...+++++.++.++.|..|
T Consensus 104 G~~~~Ig~~~~I~~g~~~~~~~~~IG~~---~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~- 179 (283)
T 4eqy_A 104 GDRNTIREFTTIHTGTVQDAGVTTLGDD---NWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQY- 179 (283)
T ss_dssp CSSCEECTTEEEECCCTTTTSEEEECSS---CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-
T ss_pred CCCcccCcceeEccceecCCCceEECCC---cEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCC-
Confidence 322 111111100 111111 233333333 34455555555555555444445555555555555555
Q ss_pred EEEccCCEeCCCcc
Q 009720 513 TIIMEKATIEDGMV 526 (527)
Q Consensus 513 ~vi~~~~~I~~g~v 526 (527)
+.|++++.|++|++
T Consensus 180 v~Ig~~~vvg~~s~ 193 (283)
T 4eqy_A 180 VRIGAHSMLGGASA 193 (283)
T ss_dssp CEECTTCEECTTCE
T ss_pred eEECCCcEECCCCe
Confidence 33466666666655
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-11 Score=125.31 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=26.0
Q ss_pred EEecCCHHHHHHHHHHhhccCC-CCccCCCCCCCCCCCccCCCeeee
Q 009720 355 WEDIGTIKSFYEANMALTKESP-AFHFYDPKTPFYTSPRFLPPTKID 400 (527)
Q Consensus 355 w~dIgt~~d~~~An~~ll~~~~-~~~~~~~~~~i~~~~~~~~p~~i~ 400 (527)
+.-+.+|+..+.....+....+ ....++|.+.+.+++.+.+++.|.
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~ 141 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVG 141 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEEC
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEEC
Confidence 4556777766655555555443 333566666666655555555553
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-11 Score=120.06 Aligned_cols=118 Identities=13% Similarity=0.194 Sum_probs=56.7
Q ss_pred eeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEE-------------eeeEEeCCcccCchhhHHhhhcCCc---cceEe
Q 009720 406 DAIISHGCFLRE-CTVE-HSIVGERSRLDYGVEL-------------KDTVMLGADYYQTESEIASLLAEGK---VPIGV 467 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I-------------~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~I 467 (527)
++.||++|+|++ +.|. ++.||++|+|+++|.| ...+.+|++.+=.+ .+.+..+. -++.|
T Consensus 30 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~---~~~I~~~~~~~~~~~I 106 (259)
T 3hsq_A 30 NVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFRE---YSNIHKGTKEDSPTVI 106 (259)
T ss_dssp SCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECT---TCEEECCSBTTBCEEE
T ss_pred CCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECC---CCEECCCccCCCcEEE
Confidence 566666666663 4443 3677777777777777 33444444310000 00000000 01455
Q ss_pred CCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe-----EEEccCCEeCCCcc
Q 009720 468 GRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMV 526 (527)
Q Consensus 468 g~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~I~~g~v 526 (527)
|+++.|. ++.|++++.||.++.|.+...+..+..+++++.|..+. +.||+++.|++|++
T Consensus 107 G~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~ 171 (259)
T 3hsq_A 107 GNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAK 171 (259)
T ss_dssp CSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSSEE
T ss_pred CCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCCCE
Confidence 5555553 34445555555555555554444445555555554442 22455666655554
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=122.07 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEe------------eeEEeC
Q 009720 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELK------------DTVMLG 444 (527)
Q Consensus 381 ~~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~------------~~~i~~ 444 (527)
++|.+.+.+.+.+.+.+.|.+ |.| .++.||++|+|++ +.|. ++.||++|+|+++|.|. ..+.++
T Consensus 4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG 83 (270)
T 1j2z_A 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 83 (270)
T ss_dssp BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence 344455555555555555543 555 3677777777774 6665 67888888888888773 222222
Q ss_pred Cc-ccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCEECCCcEEeCCC------CcCCCccCCCceEEecCeEEEc
Q 009720 445 AD-YYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD------DVQEADRPELGFYIRSGITIIM 516 (527)
Q Consensus 445 ~~-~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~------~v~~~~~~~~~~~i~~g~~vi~ 516 (527)
++ .+.....+..--..+.-++.||+++.|. ++.|++++.||.++.|.+.. .+++++.++.++.|..+ +.||
T Consensus 84 ~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~IG 162 (270)
T 1j2z_A 84 EDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQF-VRIA 162 (270)
T ss_dssp SSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEEC
T ss_pred CCCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCC-cEeC
Confidence 21 1111111100000000125666666663 34444444444444444444 44444444444444444 3346
Q ss_pred cCCEeCCCcc
Q 009720 517 EKATIEDGMV 526 (527)
Q Consensus 517 ~~~~I~~g~v 526 (527)
++|.|++|++
T Consensus 163 ~~a~Ig~~s~ 172 (270)
T 1j2z_A 163 KGCMIAGKSA 172 (270)
T ss_dssp TTCEECTTCE
T ss_pred CceEEecCcE
Confidence 7777766665
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-11 Score=120.05 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=28.6
Q ss_pred eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+|.||+++.|+.++.+.+...+++++.++.++.|..| +.||+++.|++|++|
T Consensus 126 ~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~a~Vg~~s~V 177 (266)
T 3r0s_A 126 DCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQF-VKVGEGCMIAGASAL 177 (266)
T ss_dssp TCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECSSCBB
T ss_pred ccccCCCeEECCCceecCCeEECCCcEEccCCEECCC-cEECCCCEEccCCeE
Confidence 4555555555555555544445555555555555555 334677777666654
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-11 Score=112.09 Aligned_cols=114 Identities=17% Similarity=0.271 Sum_probs=80.1
Q ss_pred CCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcc-eeEee----cEEcCCcEECCCCEEe-----eeEEeCCcccCchh
Q 009720 383 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTVEH----SIVGERSRLDYGVELK-----DTVMLGADYYQTES 452 (527)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~~----svIg~~~~I~~~~~I~-----~~~i~~~~~~~~~~ 452 (527)
+...+...+.+.|++.+. .++.||++|+|++ +.|.. ++||++|.|+++|.|. ++.+..+
T Consensus 11 ~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~------- 79 (173)
T 1xhd_A 11 KKPKIASSAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD------- 79 (173)
T ss_dssp BCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT-------
T ss_pred CCCEECCCcEECCCCEEE----CCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCC-------
Confidence 344455555555555554 3677888888874 55543 8999999999999998 4555444
Q ss_pred hHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 453 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 453 ~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.|++++.|.+|+||+++.||.+++|.....+++++.++.++.+ .++..|+++++
T Consensus 80 ------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V-------~~~~~i~~~~v 134 (173)
T 1xhd_A 80 ------------VTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLV-------SQGKKIPPNTL 134 (173)
T ss_dssp ------------CEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEE-------CTTCEECTTEE
T ss_pred ------------CEECCCCEEeCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEE-------CCCcEeCCCCE
Confidence 89999999999999999999999999876555555444444443 44444555443
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=112.30 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEeee----EEeCCcccCchh
Q 009720 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKDT----VMLGADYYQTES 452 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~~~----~i~~~~~~~~~~ 452 (527)
++...+...+.+.|++.+.+ ++.||++|+|++ +.|. .++||++|.|+++|.|... +.++++
T Consensus 8 ~~~~~i~~~~~I~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------ 77 (173)
T 1v3w_A 8 GKKPRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY------ 77 (173)
T ss_dssp TBCCEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS------
T ss_pred CCCCEECCCCEECCCCEEeC----CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCC------
Confidence 34445555666666666643 566777777763 5554 3899999999999999843 445544
Q ss_pred hHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEe
Q 009720 453 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI 521 (527)
Q Consensus 453 ~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I 521 (527)
+.|++++.|.+|+||+++.||.++.|.+...+++++.++.++.|..|. .|++++++
T Consensus 78 ------------~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~-~i~~~~~v 133 (173)
T 1v3w_A 78 ------------VTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNK-EIPDYSLV 133 (173)
T ss_dssp ------------CEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTC-EECTTEEE
T ss_pred ------------CEECCCCEECCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCc-EeCCCcEE
Confidence 899999999999999999999999998876666655555555554432 22444444
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=113.95 Aligned_cols=117 Identities=14% Similarity=0.289 Sum_probs=82.2
Q ss_pred cCCCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEe------eeEEeCCccc
Q 009720 380 FYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELK------DTVMLGADYY 448 (527)
Q Consensus 380 ~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~------~~~i~~~~~~ 448 (527)
+.++...+...+.+.|++.|.+ ++.||++|.|++ +.|. +++||++|.|+++|.|. ++.+..+
T Consensus 29 ~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~--- 101 (191)
T 3ixc_A 29 YAGVSPSVDSTAFIAGNARIIG----DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKF--- 101 (191)
T ss_dssp BTTBCCEECTTSEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTT---
T ss_pred ccCCCCEECCCCEECCCCEEeC----CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCC---
Confidence 4445555666666666666643 566677777763 4553 45999999999999998 5555544
Q ss_pred CchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 449 QTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.||+++.|.+|+||+++.||.+++|.+...++ +++.|..| ++|.++..|+++++
T Consensus 102 ----------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig------~~~~Ig~g-svV~~~~~i~~~~~ 156 (191)
T 3ixc_A 102 ----------------VTIGHSCILHACTLGNNAFVGMGSIVMDRAVME------EGSMLAAG-SLLTRGKIVKSGEL 156 (191)
T ss_dssp ----------------CEECTTCEECSCEECTTCEECTTCEECTTCEEC------TTCEECTT-CEECTTCEECTTEE
T ss_pred ----------------CEECCCCEEECCEECCCCEECCCCEEeCCeEEC------CCCEECCC-CEECCCcCcCCCeE
Confidence 899999999999999999999999998765444 44555444 33455556666554
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=120.99 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=30.2
Q ss_pred eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+|+|++++.|+.++.|.+...+++++.++.++.|..+ +.|++++.|++|++|
T Consensus 128 ~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~~~i~~~svV 179 (265)
T 4e6u_A 128 DCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQF-CKIDSYSMIGGASLI 179 (265)
T ss_dssp TCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred cEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCC-cEECCCCEEcCCCEE
Confidence 5555555555555555555555555555555555555 334777777776653
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6e-11 Score=113.84 Aligned_cols=115 Identities=18% Similarity=0.279 Sum_probs=85.2
Q ss_pred ccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-----ecEEcCCcEECCCCEEeee--------------EEeCCcccC
Q 009720 392 RFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-----HSIVGERSRLDYGVELKDT--------------VMLGADYYQ 449 (527)
Q Consensus 392 ~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-----~svIg~~~~I~~~~~I~~~--------------~i~~~~~~~ 449 (527)
.+.+.+.|+. +.| .++.||++|.|++ +.|. +++||++|.|+++|.|..+ +.++.+
T Consensus 41 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~--- 117 (213)
T 3kwd_A 41 EIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDN--- 117 (213)
T ss_dssp EECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTT---
T ss_pred cCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCC---
Confidence 3344444433 333 3567788888874 5663 4799999999999999851 333333
Q ss_pred chhhHHhhhcCCccceEeCCCcEEee-eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 450 TESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 450 ~~~~~~~~~~~~~~~~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.|++++.|.. ++||+++.||.+++|.+ ..+++++.++.++.|. + ++|++++.|++|+++
T Consensus 118 ---------------v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~-~-~~i~~~~~v~~~~vv 178 (213)
T 3kwd_A 118 ---------------VSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQ-D-VEIPPGKYVPSGMVI 178 (213)
T ss_dssp ---------------CEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEEE-S-CEECTTBEECTTCEE
T ss_pred ---------------cEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEEC-C-cEeCCCCEECCCcEE
Confidence 78888888876 99999999999999987 6788888888888884 4 567889999988764
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-12 Score=130.20 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=50.5
Q ss_pred CccCCCeeeeceeeeeeEECCCCEEcceeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 391 PRFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 391 ~~~~~p~~i~~~~i~~s~I~~g~~I~~~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
.++.|++.|.. ++.||++|+|++..| .++.||++|.|+.+|.|++.+.+|.+ +.|+.
T Consensus 146 ~~I~p~a~I~~----~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~------------------v~I~~ 203 (316)
T 3tk8_A 146 FRVVPPAIARR----GSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSG 203 (316)
T ss_dssp CEECTTCEEBT----TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEECT
T ss_pred cEEeCCeEEeC----CcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCC------------------CEEcC
Confidence 34445544443 455666665554322 23344444444444444333333332 45555
Q ss_pred CcEEee---------eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 470 NTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 470 ~~~I~~---------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
++.|.+ ++||++|.||.+++|..+..+++++.++.|++|..+
T Consensus 204 ~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~ 254 (316)
T 3tk8_A 204 GVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQS 254 (316)
T ss_dssp TCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 555543 666666666666666665555555555555555554
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-11 Score=110.73 Aligned_cols=115 Identities=20% Similarity=0.373 Sum_probs=80.4
Q ss_pred CCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcc-eeE----eecEEcCCcEECCCCEEeee-----------EEeCCc
Q 009720 383 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTV----EHSIVGERSRLDYGVELKDT-----------VMLGAD 446 (527)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i----~~svIg~~~~I~~~~~I~~~-----------~i~~~~ 446 (527)
....+...+.+.|++.+.+ ++.||++|+|++ +.| .++.||++|.|+++|.|..+ +.++++
T Consensus 18 ~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~ 93 (189)
T 3r1w_A 18 ISPKLGERVFVDRSSVIIG----DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDD 93 (189)
T ss_dssp BCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSS
T ss_pred cCCEECCCcEECCCCEEee----eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCC
Confidence 3445566666666666643 566777777763 455 34699999999999999874 344444
Q ss_pred ccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 447 YYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.||+++.|.+|+||+++.||.+++|.....++++ +.|..| ++|.++..|+++++
T Consensus 94 ------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~v~Ig~~------~~Ig~~-s~V~~g~~i~~~~v 148 (189)
T 3r1w_A 94 ------------------VTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDE------VIVAAG-ATVSPGKVLESGFV 148 (189)
T ss_dssp ------------------EEECTTCEEESCEECSSEEECTTCEECTTCEECSS------CEECTT-CEECTTCEECTTEE
T ss_pred ------------------CEECCCCEEeCcEECCCcEECCCCEEcCCCEECCC------CEEccC-CEECCCCEeCCCCE
Confidence 99999999999999999999999999876555544 444444 33355555555544
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.1e-11 Score=110.71 Aligned_cols=118 Identities=15% Similarity=0.316 Sum_probs=81.3
Q ss_pred cCCCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEe-----------eeEEe
Q 009720 380 FYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELK-----------DTVML 443 (527)
Q Consensus 380 ~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~-----------~~~i~ 443 (527)
+......+...+.+.|++.+.+ ++.||++|+|++ +.|. ++.||++|.|+++|.|. ..+.+
T Consensus 11 ~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~I 86 (187)
T 3r3r_A 11 YKNLFPGIGQRVMIDTSSVVIG----DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLII 86 (187)
T ss_dssp BTTBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEE
T ss_pred hcccCcccCCCeEECCCCEEEC----ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEE
Confidence 3344455566666666666643 566777777763 4553 35999999999999993 33444
Q ss_pred CCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCC
Q 009720 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIED 523 (527)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~ 523 (527)
+++ +.||+++.|.+|+||+++.||.+++|..... +++++.|..| ++|.++..|++
T Consensus 87 g~~------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~------Ig~~~~Ig~~-s~V~~~~~i~~ 141 (187)
T 3r3r_A 87 GED------------------VTVGHKVMLHGCTIGNRVLVGMGSIVLDGAI------IEDDVMIGAG-SLVPQHKRLES 141 (187)
T ss_dssp CSS------------------CEECTTCEEESCEECSSEEECTTCEECTTCE------ECSSEEECTT-CEECTTCEECT
T ss_pred CCC------------------CEECCCCEEeCcEECCCCEECCCCEECCCCE------ECCCCEECCC-CEECCCcCcCC
Confidence 443 8999999999999999999999999976544 4445555555 33355566666
Q ss_pred Ccc
Q 009720 524 GMV 526 (527)
Q Consensus 524 g~v 526 (527)
+++
T Consensus 142 ~~v 144 (187)
T 3r3r_A 142 GYL 144 (187)
T ss_dssp TEE
T ss_pred CcE
Confidence 654
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-10 Score=107.86 Aligned_cols=66 Identities=20% Similarity=0.389 Sum_probs=33.2
Q ss_pred eeEEC--CCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCC
Q 009720 406 DAIIS--HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNV 482 (527)
Q Consensus 406 ~s~I~--~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~ 482 (527)
++.|| ++|+|++ +++|+.+++||++|.|...+.++++ +.||+++.|. +|+|..++
T Consensus 87 ~~~Ig~~~g~~I~~----~~~I~~~~~IG~~~~I~~~~~i~~~------------------~~Ig~~~~I~~~~~i~~~~ 144 (194)
T 3bfp_A 87 SAIVEENAGILIMP----YVVINAKAKIEKGVILNTSSVIEHE------------------CVIGEFSHVSVGAKCAGNV 144 (194)
T ss_dssp TCEECTTSCCEECT----TCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTC
T ss_pred CceeCCCCCcEEcC----CCEECCCCEECCCCEECCCCEEcCC------------------CEECCCCEECCCCEECCCc
Confidence 45666 6666663 2444555555555555444444433 4555555554 34455455
Q ss_pred EECCCcEEeCC
Q 009720 483 KIGKDVVIVNK 493 (527)
Q Consensus 483 ~Ig~~~~i~~~ 493 (527)
+||++|.|...
T Consensus 145 ~Ig~~~~Ig~~ 155 (194)
T 3bfp_A 145 KIGKNCFLGIN 155 (194)
T ss_dssp EECTTCEECTT
T ss_pred EECCCCEEcCC
Confidence 55555544433
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=115.66 Aligned_cols=121 Identities=13% Similarity=0.180 Sum_probs=56.3
Q ss_pred eeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEee------------eEEeCCc-ccCchhhHHhhhcCCccceEeCCC
Q 009720 406 DAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKD------------TVMLGAD-YYQTESEIASLLAEGKVPIGVGRN 470 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~------------~~i~~~~-~~~~~~~~~~~~~~~~~~~~Ig~~ 470 (527)
++.||++|+|++ +.|. ++.||++|+|+++|.|.. .+.++++ .......+..--..+.-++.||++
T Consensus 35 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~ 114 (262)
T 2qia_A 35 HVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSD 114 (262)
T ss_dssp TEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSS
T ss_pred CCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcCEECCC
Confidence 566666666663 4443 567777777777777753 2333332 000000000000000001333333
Q ss_pred cEE-------eeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 471 TKI-------RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 471 ~~I-------~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.| ++|.||+++.|+.++.+.....+++++.++.++.|..| +.||+++.|++|++|
T Consensus 115 ~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~-v~Ig~~~~ig~~s~V 177 (262)
T 2qia_A 115 NLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQF-CIIGAHVMVGGCSGV 177 (262)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECSSCEE
T ss_pred cEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCC-CEECCCCEEccCCEE
Confidence 333 24444444444444444444444555555555555555 335777777777653
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.1e-11 Score=116.62 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=70.2
Q ss_pred CCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEe-------------eeEEeCC
Q 009720 383 PKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELK-------------DTVMLGA 445 (527)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~-------------~~~i~~~ 445 (527)
|.+.+.+.+.+.+.+.|.+ |.| .++.||++|+|++ +.|. ++.||++|+|++++.|. ..+.+|+
T Consensus 9 p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~ 88 (266)
T 3r0s_A 9 PSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGK 88 (266)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECT
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECC
Confidence 3333333444444444432 333 2567777777774 5554 67888888888888884 2344444
Q ss_pred c-ccCchhhHHh--hhcCCccceEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEe
Q 009720 446 D-YYQTESEIAS--LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI 521 (527)
Q Consensus 446 ~-~~~~~~~~~~--~~~~~~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I 521 (527)
+ .+.....+.. ....+ ++.||+++.|. +|.|+.++.||.++.|.+...+.....+++++.|..+ ++|.++++|
T Consensus 89 ~~~Ig~~~~I~~~~~~~~~--~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~-a~V~~~v~I 165 (266)
T 3r0s_A 89 NATIREFATINSGTAKGDG--FTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGL-TPIHQFVKV 165 (266)
T ss_dssp TCEECTTCEEECCCTTTTS--EEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT-CEECTTCEE
T ss_pred CCEECCceEecCCcccCCc--cEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccC-CEECCCcEE
Confidence 3 0000000000 00000 13344444442 3444455555555555555555555566666666555 444666666
Q ss_pred CCCccC
Q 009720 522 EDGMVI 527 (527)
Q Consensus 522 ~~g~vi 527 (527)
|++++|
T Consensus 166 g~~a~V 171 (266)
T 3r0s_A 166 GEGCMI 171 (266)
T ss_dssp CTTCEE
T ss_pred CCCCEE
Confidence 666654
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.6e-11 Score=117.86 Aligned_cols=124 Identities=12% Similarity=0.133 Sum_probs=61.5
Q ss_pred CCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcc----cCchhhH
Q 009720 383 PKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADY----YQTESEI 454 (527)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~----~~~~~~~ 454 (527)
+...|++++.+.++++|.+ +.| ..++|++++.|++ +.| .+++|+.+++||++|.|...+.++... |..+. .
T Consensus 21 ~~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~-~ 99 (283)
T 4eqy_A 21 SMSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEP-T 99 (283)
T ss_dssp --CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCC-C
T ss_pred CCcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCC-c
Confidence 4556677777777777754 444 3355555555552 444 245555566666666665444443210 11110 1
Q ss_pred HhhhcCCccceEeCCCcEEee--------eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEec
Q 009720 455 ASLLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRS 510 (527)
Q Consensus 455 ~~~~~~~~~~~~Ig~~~~I~~--------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~ 510 (527)
...++++ +.|+++++|.. ++||+++.|+.++.|.....+++++.++.+..+..
T Consensus 100 ~v~IG~~---~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~ 160 (283)
T 4eqy_A 100 RLVIGDR---NTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAG 160 (283)
T ss_dssp EEEECSS---CEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECT
T ss_pred eEEECCC---cccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcC
Confidence 2334444 56666666653 66666666555555544444444444444444333
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-11 Score=112.08 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=12.1
Q ss_pred ccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 500 DRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 500 ~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.++.++.|..| ++||++++|++|++
T Consensus 109 v~IG~~~~I~~g-~~Ig~~~~Igagsv 134 (192)
T 3mqg_A 109 ATLGANCTVVCG-ATIGRYAFVGAGAV 134 (192)
T ss_dssp CEECTTCEECTT-CEECTTCEECTTCE
T ss_pred cEECCCCEECCC-CEECCCCEEcCCCE
Confidence 333344444444 33455555555554
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=115.31 Aligned_cols=44 Identities=25% Similarity=0.284 Sum_probs=19.4
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
+.||.++.|. +|.|++++.|+.++.|.....+++.+.++.++.|
T Consensus 95 ~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I 139 (273)
T 3fs8_A 95 FQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFV 139 (273)
T ss_dssp CEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEE
T ss_pred CEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEE
Confidence 4444444443 4444444444444444433333333333433333
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=110.54 Aligned_cols=128 Identities=9% Similarity=0.033 Sum_probs=74.0
Q ss_pred CCCCCCCccCCCeeeeceeeeeeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEeeeEEeCCcccCchhhH-Hhhh
Q 009720 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLL 458 (527)
Q Consensus 385 ~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~-~~~~ 458 (527)
..|.+++.+.+.+.|.+ ++.||++|+|++ +.|. +.+||++|.|+++|.|.+.............+. ...+
T Consensus 13 v~I~~~a~I~~~a~I~g----~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~I 88 (194)
T 3tv0_A 13 VKIAPGAVVCVESEIRG----DVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMII 88 (194)
T ss_dssp EEECTTCEECTTSEEES----SEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEE
T ss_pred CEECCCCEEcCCCEEeC----CCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEE
Confidence 34445555555555543 566777777764 4442 468999999999999976543332111111100 1122
Q ss_pred cCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 459 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 459 ~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+++ +.|+.++.+.+|.|++++.||.++.|.... .+++++.|..| ++|.+++.|+++++
T Consensus 89 g~~---~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv------~IG~~~~Igag-svV~~~~~Ip~~sv 146 (194)
T 3tv0_A 89 GTN---NVFEVGCYSQAMKMGDNNVIESKAYVGRNV------ILTSGCIIGAC-CNLNTFEVIPENTV 146 (194)
T ss_dssp CSS---CEECTTCEECCSEECSSCEECTTCEECTTE------EECSSCEECTT-CEECCCEEECTTEE
T ss_pred CCc---ceEecceeEeeeeecccceecceeeECCeE------EECCCCEECCC-CEECCCcEECCCCE
Confidence 233 566677777778888888888888887654 44445555555 44466666666654
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=109.91 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=9.0
Q ss_pred ecEEcCCcEECCCCEE
Q 009720 422 HSIVGERSRLDYGVEL 437 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I 437 (527)
++.||++|.|+++|.|
T Consensus 70 ~v~IG~~~~I~~~~~I 85 (205)
T 3vbi_A 70 KVTIGSYSHIAAYTAL 85 (205)
T ss_dssp EEEECSSEEECTTCEE
T ss_pred ceEECCCCEECCCeEE
Confidence 4555555555555555
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=114.91 Aligned_cols=62 Identities=24% Similarity=0.310 Sum_probs=32.0
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCC----------------------CccCCCceEEecCeEE-----Ec
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQE----------------------ADRPELGFYIRSGITI-----IM 516 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~----------------------~~~~~~~~~i~~g~~v-----i~ 516 (527)
+.|+.++.|. +|+||+++.|+.++.|.....+.+ ...+++++.|..+.++ ||
T Consensus 113 ~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG 192 (273)
T 3fs8_A 113 VKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHIN 192 (273)
T ss_dssp CEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCSSSSCSCCCCCEECTTCEECTTCEECTTCEEC
T ss_pred CEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCCCCcccccCCcEECCCeEEcCCCEEcCCCEEC
Confidence 4444444443 555555555555555554433332 3566677777666443 44
Q ss_pred cCCEeCCCcc
Q 009720 517 EKATIEDGMV 526 (527)
Q Consensus 517 ~~~~I~~g~v 526 (527)
++|+|++|++
T Consensus 193 ~~~~Igagsv 202 (273)
T 3fs8_A 193 EDALVGAGAV 202 (273)
T ss_dssp TTCEECTTCE
T ss_pred CCCEECCCCE
Confidence 4444444443
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-10 Score=115.51 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=76.3
Q ss_pred cCCCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEee-----eEEeCCcccCc
Q 009720 380 FYDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKD-----TVMLGADYYQT 450 (527)
Q Consensus 380 ~~~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~-----~~i~~~~~~~~ 450 (527)
+++|.+.+.+.+.+.+++.|.+ |.| .++.||++|+|++ +.|. ++.||++|+|++++.|.. +.+..+.....
T Consensus 9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~ 88 (305)
T 3t57_A 9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88 (305)
T ss_dssp CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECT
T ss_pred eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECC
Confidence 3455555665666666666543 445 3566666666663 4443 566666666666666642 22211111111
Q ss_pred hhhH---------------HhhhcCC------------c---cceEeCCCcEE-eeeEEcCCCEECCCcEEeCCCCcCCC
Q 009720 451 ESEI---------------ASLLAEG------------K---VPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEA 499 (527)
Q Consensus 451 ~~~~---------------~~~~~~~------------~---~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~~v~~~ 499 (527)
...+ ...++++ . -++.||+++.| .+|.|++++.||.++.|.+...+...
T Consensus 89 ~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~ 168 (305)
T 3t57_A 89 HAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGH 168 (305)
T ss_dssp TCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred ccEeCccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCC
Confidence 0000 0001111 0 01344444444 24555566666666666666666666
Q ss_pred ccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 500 DRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 500 ~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
..+++++.|..+ ++|.++++||++++|
T Consensus 169 v~Igd~~~Ig~~-~~V~~~v~IG~~a~i 195 (305)
T 3t57_A 169 VVVEDNTHTAGA-SVVHQFCHIGSFAFI 195 (305)
T ss_dssp CEECSSCEECTT-CEECTTCEECTTCEE
T ss_pred CEECCceEEcCC-CEEcCCeEECCCCEE
Confidence 677777777666 455777777777764
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=113.34 Aligned_cols=123 Identities=9% Similarity=0.039 Sum_probs=57.6
Q ss_pred CCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCch--h-hHH
Q 009720 383 PKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTE--S-EIA 455 (527)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~--~-~~~ 455 (527)
+...|++++.+.++++|.+ +.| ..++|++++.|++ +.| .+++|+.+++||++|.|...+.++.+..... . ...
T Consensus 4 ~~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~ 83 (262)
T 2qia_A 4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTR 83 (262)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCE
T ss_pred CCCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccc
Confidence 4444555555555555532 333 2344444444442 444 3455555555555555554444432111000 0 002
Q ss_pred hhhcCCccceEeCCCcEEe--------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 456 SLLAEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 456 ~~~~~~~~~~~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
..++++ +.|++++.|. .++||+++.|+.++.|.....+++++.++.+..+
T Consensus 84 ~~IG~~---~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i 141 (262)
T 2qia_A 84 VEIGDR---NRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATL 141 (262)
T ss_dssp EEECSS---CEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred eEECCC---ceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccc
Confidence 233344 5566666664 2677776666666666544444444444433333
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=119.40 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=19.2
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+.|+.+++||+++.|.+...+....++++++.|..+
T Consensus 257 v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~ 292 (372)
T 3pmo_A 257 IMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGG 292 (372)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSSCEECTT
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCeEEeCC
Confidence 344444555555555555555555556666666555
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-10 Score=112.52 Aligned_cols=17 Identities=6% Similarity=0.296 Sum_probs=9.4
Q ss_pred ecEEcCCcEECCCCEEe
Q 009720 422 HSIVGERSRLDYGVELK 438 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~ 438 (527)
+++||++|.|+++|.|.
T Consensus 79 ~v~IG~~~~Ig~~~~I~ 95 (259)
T 3hsq_A 79 KTVIGDHNIFREYSNIH 95 (259)
T ss_dssp CEEECSSCEECTTCEEE
T ss_pred cEEECCCcEECCCCEEC
Confidence 34555555555555554
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=118.74 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=19.6
Q ss_pred eeeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEe
Q 009720 405 KDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELK 438 (527)
Q Consensus 405 ~~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~ 438 (527)
.++.||++|.|++ +.| .++.||++|.|++++.|.
T Consensus 144 ~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~ 179 (341)
T 3eh0_A 144 KNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVG 179 (341)
T ss_dssp TTCEECTTCEECSSCEECTTCEECSSCEECTTCEEE
T ss_pred CCCEECCCcEECCCcEECCCCEECCccEEcCCcEEC
Confidence 3455555555552 444 456666666666666663
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-10 Score=106.77 Aligned_cols=98 Identities=17% Similarity=0.333 Sum_probs=79.4
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe------ee
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR------NC 476 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~------~~ 476 (527)
++.|+++|.|. .++.||++|.|+++|.|..+ +.+|.+ +.|++++.|. +|
T Consensus 39 ~~~I~~~~~i~----~~v~IG~~~~I~~~~~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~g~~ 96 (191)
T 3ixc_A 39 TAFIAGNARII----GDVCIGKNASIWYGTVLRGDVDKIEVGEG------------------TNIQDNTVVHTDSMHGDT 96 (191)
T ss_dssp TSEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEECC----CCE
T ss_pred CCEECCCCEEe----CCcEECCCCEECCCCEEecCCCCeEECCC------------------CEECCCCEEeecCCcCCe
Confidence 45555555554 35899999999999999854 366665 9999999998 89
Q ss_pred EEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 477 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 477 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+||+++.||.++.|.+ ..+++++.++.++.|..| ++|+++++|++|++|
T Consensus 97 ~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~gsvV 145 (191)
T 3ixc_A 97 VIGKFVTIGHSCILHA-CTLGNNAFVGMGSIVMDR-AVMEEGSMLAAGSLL 145 (191)
T ss_dssp EECTTCEECTTCEECS-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred EECCCCEECCCCEEEC-CEECCCCEECCCCEEeCC-eEECCCCEECCCCEE
Confidence 9999999999999986 568888888888888888 455888888888764
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=123.02 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=59.8
Q ss_pred CccCCCeeeec-eee-eeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEe
Q 009720 391 PRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (527)
Q Consensus 391 ~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I 467 (527)
+.+.+.+.|.+ +.| .++.||++|+|++ +.|.+++||++|+|+ +|.|.++.+..+ +.|
T Consensus 275 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~-------------------~~I 334 (468)
T 1hm9_A 275 VEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADG-------------------VTV 334 (468)
T ss_dssp CEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTT-------------------CEE
T ss_pred cEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCC-------------------cEE
Confidence 34444555533 555 4688999999984 788899999999999 999988777666 777
Q ss_pred CCCcEEe-eeEEcCCCEECCCcEEe
Q 009720 468 GRNTKIR-NCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 468 g~~~~I~-~~iI~~~~~Ig~~~~i~ 491 (527)
|+++.|. +|+|++++.||.++.|.
T Consensus 335 g~~~~i~~~~~ig~~~~Ig~~~~i~ 359 (468)
T 1hm9_A 335 GPYAHIRPNSSLGAQVHIGNFVEVK 359 (468)
T ss_dssp CSSCEECSSCEECTTCEEEEEEEEE
T ss_pred CCceEEecCcEECCccEECCCcEEe
Confidence 7777777 77777777777666654
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=114.48 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=56.5
Q ss_pred eeEECCCCEEcceeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe---------e
Q 009720 406 DAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR---------N 475 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~---------~ 475 (527)
++.|+++|.|++..| .++.||++|.|+.+|.|.+.+.+|.+ +.|+.++.|. .
T Consensus 116 ~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~------------------v~I~~~~~i~g~~~~~~~~~ 177 (276)
T 3gos_A 116 GAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKN------------------VHLSGGVGIGGVLEPLQANP 177 (276)
T ss_dssp TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEECTTCEECCCCSSTTSCC
T ss_pred CCEECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCC------------------CEECCCCEECCccccCCCCC
Confidence 455555555554322 24555555555555555543333333 5566666653 3
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCC-------EeCCCcc
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKA-------TIEDGMV 526 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~-------~I~~g~v 526 (527)
++||+|+.||.+++|.....+++++.++.|++|..| +.|++++ .||++++
T Consensus 178 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~-~~I~~~~~~~~~~g~Vp~~sv 234 (276)
T 3gos_A 178 TIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQS-TRIYDRETGEVHYGRVPAGSV 234 (276)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CCEEETTTCCEECSEECTTEE
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEECCC-cEEccccccceeccccCCCcE
Confidence 667777777777777666666666666666666555 2335544 5666554
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.6e-10 Score=103.03 Aligned_cols=98 Identities=20% Similarity=0.360 Sum_probs=80.6
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-----eeE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----NCI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-----~~i 477 (527)
++.|+++|.|. .++.||++|.|+++|.|... +.+|.+ +.|++++.|. +++
T Consensus 18 ~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~~ 75 (173)
T 1xhd_A 18 SAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYPLI 75 (173)
T ss_dssp TCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCCEE
T ss_pred CcEECCCCEEE----CCEEECCCcEEcCCcEEecCCCeEEECCC------------------CEECCCCEEEeCCCCCeE
Confidence 45555555554 46899999999999999875 666665 8999999998 899
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
||+++.|+.++.|.+ ..+++++.++.++.|..| ++||++++|++|++|
T Consensus 76 Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Ig~~s~V 123 (173)
T 1xhd_A 76 LEDDVTVGHQVILHS-CHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLV 123 (173)
T ss_dssp ECTTCEECTTCEEES-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred ECCCCEECCCCEEeC-CEECCCCEEcCCCEEcCC-CEECCCCEECCCCEE
Confidence 999999999999976 467888888888888887 556999999998864
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=116.36 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=16.6
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
++||+|+.||.+++|.....+++++.++.++.|..|
T Consensus 203 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g 238 (304)
T 3eg4_A 203 TIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKS 238 (304)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred eEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCC
Confidence 445555555555544444444444444444444333
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-10 Score=116.39 Aligned_cols=94 Identities=20% Similarity=0.327 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCccCCCeeeec-eeee-eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHh
Q 009720 381 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS 456 (527)
Q Consensus 381 ~~~~~~i~~~~~~~~p~~i~~-~~i~-~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~ 456 (527)
++|.+.+...+.+.+++.|.+ +.|. ++.||++|.|++ +.| .+++||++|.|+++|+|...+.+|.+
T Consensus 127 i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~---------- 196 (374)
T 2iu8_A 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKR---------- 196 (374)
T ss_dssp BCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTT----------
T ss_pred cCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCC----------
Confidence 334444444555555555533 4453 566667777763 445 45666666666666666444444443
Q ss_pred hhcCCccceEeCCCcEEe---------------------eeEEcCCCEECCCcEEeC
Q 009720 457 LLAEGKVPIGVGRNTKIR---------------------NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 457 ~~~~~~~~~~Ig~~~~I~---------------------~~iI~~~~~Ig~~~~i~~ 492 (527)
+.|+.+++|. +++||+++.||+|++|..
T Consensus 197 --------~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~ 245 (374)
T 2iu8_A 197 --------VIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDR 245 (374)
T ss_dssp --------CEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEE
T ss_pred --------CEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEcc
Confidence 6777777663 378888888888887754
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-10 Score=110.74 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCCCCccCCCeeeeceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 387 i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
|++++.+.++++|++ ++.|+++|+|++ ++.||++|.|+++|.|.+.+.+|.
T Consensus 4 I~p~a~I~~~a~Ig~----~~~Ig~~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~ 54 (270)
T 1j2z_A 4 IAKTAIISPKAEINK----GVEIGEFCVIGD----GVKLDEGVKLHNNVTLQGHTFVGK 54 (270)
T ss_dssp BCTTCEECTTSEECT----TCEECTTCEECT----TCEECTTCEECTTCEECSEEEECT
T ss_pred cCCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEEcCCcEEeCCeEEcC
Confidence 444444445555533 555555555552 356666666666666654444443
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.6e-10 Score=109.73 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEee------------eEEeC
Q 009720 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKD------------TVMLG 444 (527)
Q Consensus 381 ~~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~------------~~i~~ 444 (527)
++|.+.+.+.+.+.+.+.|.+ +.| .++.||++|+|++ +.|. ++.||++|+|+++|.|.. .+.++
T Consensus 10 I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG 89 (265)
T 4e6u_A 10 IHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIG 89 (265)
T ss_dssp BCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEEC
T ss_pred ECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEEC
Confidence 334444444444444444432 444 3577777777773 5554 578888888888888832 44444
Q ss_pred CcccCchhhHHhhhcCCccceEeCCCcEEe--------eeEEcCCCEECCCcEE------------eCCCCcCCCccCCC
Q 009720 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVI------------VNKDDVQEADRPEL 504 (527)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~--------~~iI~~~~~Ig~~~~i------------~~~~~v~~~~~~~~ 504 (527)
++ +.|+++++|. +++||+++.|+.++.| .+...+.....+++
T Consensus 90 ~~------------------~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd 151 (265)
T 4e6u_A 90 NN------------------NLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGD 151 (265)
T ss_dssp SS------------------CEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECS
T ss_pred CC------------------eEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECC
Confidence 43 6666666665 3555555555555544 44444444444455
Q ss_pred ceEEecCeEEEccCCEeCCCccC
Q 009720 505 GFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 505 ~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++.|..+ ++|.++++|+++++|
T Consensus 152 ~~~Ig~~-a~V~~~v~Ig~~~~i 173 (265)
T 4e6u_A 152 HVIVGGN-SGIHQFCKIDSYSMI 173 (265)
T ss_dssp SCEECTT-CEECTTCEECTTCEE
T ss_pred CeEEcCC-CEECCCcEECCCCEE
Confidence 5555444 334555566665543
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.1e-10 Score=103.43 Aligned_cols=98 Identities=16% Similarity=0.270 Sum_probs=79.7
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEE---------
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKI--------- 473 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I--------- 473 (527)
++.|+++|.|. .++.||++|.|+++|.|... +.+|.+ +.|++++.|
T Consensus 21 ~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~ 78 (187)
T 3r3r_A 21 RVMIDTSSVVI----GDVRLADDVGIWPLVVIRGDVNYVAIGAR------------------TNIQDGSVLHVTHKSSSN 78 (187)
T ss_dssp TCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCBTTB
T ss_pred CeEECCCCEEE----CceEECCCCEECCCcEEEcCCccEEECCC------------------CEECCCCEEecCCccccC
Confidence 34445555554 46899999999999999864 366665 999999999
Q ss_pred ---eeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 474 ---RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 474 ---~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.+++||+++.||.++.|.+ ..+++++.++.++.|..| ++|+++++|++|++|
T Consensus 79 ~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~~s~V 133 (187)
T 3r3r_A 79 PHGNPLIIGEDVTVGHKVMLHG-CTIGNRVLVGMGSIVLDG-AIIEDDVMIGAGSLV 133 (187)
T ss_dssp C-CBCEEECSSCEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred CCCCCeEECCCCEECCCCEEeC-cEECCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 7899999999999999986 578888888888888777 556888888888864
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.7e-10 Score=115.57 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=15.4
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
|+.|++||+++.|.+...+....++++++.|..+
T Consensus 242 I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~ 275 (357)
T 4e79_A 242 IAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGA 275 (357)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred cCCCeEECCCCEECCCCEECCCcEECCCCEECcC
Confidence 3344444444444444444444455555555444
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.2e-10 Score=105.85 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=81.8
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee----EEeCCcccCchhhHHhhhcCCccceEeCCCcEEee------
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN------ 475 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~------ 475 (527)
+++|+++|.|+ .+..||++|.|+++|.|.+. +.+|.+ +.|++++.|..
T Consensus 45 ~~~I~~~a~i~----~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~------------------~~Ig~~~~I~~~~~~~~ 102 (213)
T 3kwd_A 45 TAYVHSFSNLI----GDVRIKDYVHIAPGTSIRADEGTPFHIGSR------------------TNIQDGVVIHGLQQGRV 102 (213)
T ss_dssp TCEECTTSEEE----ESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECSSCCE
T ss_pred CCEECCCCEEe----CceEECCCCEEcCCcEEecCCCCceEECCC------------------CEECCCCEEEecCCCce
Confidence 56666666665 34799999999999999763 566665 89999999985
Q ss_pred ---------eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 476 ---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 476 ---------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++||+++.|+.++.|.+...+++++.++.++.|.+ ++||++++|++|++|
T Consensus 103 ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~--~~Ig~~~~Igags~V 161 (213)
T 3kwd_A 103 IGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN--ARVGAGCVVMMHVLI 161 (213)
T ss_dssp ECTTSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECSSCEE
T ss_pred eccCCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeC--cEECCCCEEcCCCEE
Confidence 89999999999999998788889999999999975 788999999999875
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.04 E-value=8.2e-10 Score=113.13 Aligned_cols=119 Identities=8% Similarity=0.069 Sum_probs=70.2
Q ss_pred eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhH---------HhhhcCCccceEeCCCcEEee
Q 009720 406 DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI---------ASLLAEGKVPIGVGRNTKIRN 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~Ig~~~~I~~ 475 (527)
++.|+++|.|++ +.|.+|+||++++|+++|+|+++++.++........+ +.+-.+-+-.+.|++++.|.+
T Consensus 83 ~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~ 162 (334)
T 2pig_A 83 PCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNH 162 (334)
T ss_dssp SCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEES
T ss_pred eeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEec
Confidence 455666666653 5556666666666666666666654443211111100 011111111177889999988
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe---EEEccCCEeCCCc
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI---TIIMEKATIEDGM 525 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~---~vi~~~~~I~~g~ 525 (527)
|+|+++|.|+.++.|. ...+.+...+++++.+..+. +.|.+++.|+.++
T Consensus 163 s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~a 214 (334)
T 2pig_A 163 SRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHA 214 (334)
T ss_dssp CEEETTCEECTTCEEE-SEEECTTCEECTTCEEECCSSCCEEECTTCEECTTC
T ss_pred cEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCceeccEEECCCcEEeeeE
Confidence 9999999999988887 45567777777777776543 4456666665554
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=110.87 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=25.3
Q ss_pred CCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEe
Q 009720 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVML 443 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~ 443 (527)
++.+.|++++.+.+.++|.+ ++.|+++|+|++ ++.||++|.|+++++|.+.+.+
T Consensus 5 ~~~~~I~p~A~I~~~a~Ig~----~v~Ig~~~~I~~----~v~IG~~~~I~~~~~I~g~~~I 58 (305)
T 3t57_A 5 DSEVLIHPSAVVHPNAVIGK----GVSVGPYCTIGS----SVKLGNGCKLYPSSHVFGNTEL 58 (305)
T ss_dssp ----CBCTTSEECTTSEECT----TCEECTTCEECT----TEEECTTCEECTTCEECSSEEE
T ss_pred CCCCeECCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEECCCcEECCCcEE
Confidence 34555666666666666643 444444444442 2455555555555555433333
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-09 Score=101.96 Aligned_cols=98 Identities=13% Similarity=0.239 Sum_probs=79.5
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEeee------
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC------ 476 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~------ 476 (527)
++.|+++|+|. .++.||++|.|+++|.|... +.+|.+ +.|++++.|..+
T Consensus 25 ~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~ 82 (189)
T 3r1w_A 25 RVFVDRSSVII----GDVELGDDCSVWPLAVIRGDMHHIRIGAR------------------TSVQDGSVLHITHASDYN 82 (189)
T ss_dssp TCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCSSSS
T ss_pred CcEECCCCEEe----eeeEECCCCEECCCCEEecCCCceEECCC------------------CEECCCCEEecCCcccCC
Confidence 45555555554 36899999999999999733 467765 999999999764
Q ss_pred ------EEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 477 ------IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 477 ------iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+||+++.||.++.|.+ ..+++++.++.++.|..| ++||++++|++|++|
T Consensus 83 ~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 137 (189)
T 3r1w_A 83 PGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDG-AIVEDEVIVAAGATV 137 (189)
T ss_dssp TTCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred CCCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCC-CEECCCCEEccCCEE
Confidence 9999999999999987 678888888888888877 555999999988875
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-09 Score=102.22 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=74.8
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEee---eEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe--------
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-------- 474 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-------- 474 (527)
+++|+++|.|+ .++.||++|.|+++|+|.. .+.+|.+ +.|++++.|.
T Consensus 18 ~a~I~~~a~I~----g~V~IG~~~~I~~~~~I~~~~g~i~IG~~------------------~~I~~~~~I~~~~~~~~~ 75 (194)
T 3tv0_A 18 GAVVCVESEIR----GDVTIGPRTVIHPKARIIAEAGPIVIGEG------------------NLIEEQALIINAYPDNIT 75 (194)
T ss_dssp TCEECTTSEEE----SSEEECTTCEECTTCEEEESSSCEEECTT------------------CEECTTCEEEECCCSCC-
T ss_pred CCEEcCCCEEe----CCCEECCCCEECCCCEEccCCCCeEECCC------------------ccccCCcccccccccccc
Confidence 45566666665 3578888888988888853 3555554 7888888874
Q ss_pred ---------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 475 ---------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 475 ---------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+++||+++.|+.++.+.+ ..+++++.++.++.|..| ++||+||+|++|++|
T Consensus 76 ~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~g-v~IG~~~~IgagsvV 135 (194)
T 3tv0_A 76 PDTEDPEPKPMIIGTNNVFEVGCYSQA-MKMGDNNVIESKAYVGRN-VILTSGCIIGACCNL 135 (194)
T ss_dssp --------CCEEECSSCEECTTCEECC-SEECSSCEECTTCEECTT-EEECSSCEECTTCEE
T ss_pred cccccCcCCceEECCcceEecceeEee-eeecccceecceeeECCe-EEECCCCEECCCCEE
Confidence 468888899988888865 467888888888999888 666999999999875
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=102.48 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=53.5
Q ss_pred CCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhh
Q 009720 383 PKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL 458 (527)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~ 458 (527)
|.+.+...+.+.+.+.|.. +.| .++.||++|.|++ +.|. ++.||++|.|+++|.|.+.+.++++
T Consensus 8 p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~------------ 75 (192)
T 3mqg_A 8 PTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDD------------ 75 (192)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTT------------
T ss_pred CCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCC------------
Confidence 3333333334444444422 333 2455555555552 3332 2555555555555555444444333
Q ss_pred cCCccceEeCCCcEE----------------eeeEEcCCCEECCCcEEeCCCCcCCCccCCCceE
Q 009720 459 AEGKVPIGVGRNTKI----------------RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFY 507 (527)
Q Consensus 459 ~~~~~~~~Ig~~~~I----------------~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~ 507 (527)
+.||.++.+ ..++|++++.||.+++|.....+++++.++.++.
T Consensus 76 ------~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~Igagsv 134 (192)
T 3mqg_A 76 ------VFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAV 134 (192)
T ss_dssp ------CEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred ------CEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCE
Confidence 445544444 3477888888888888876554444444433333
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-09 Score=113.71 Aligned_cols=82 Identities=11% Similarity=0.153 Sum_probs=60.7
Q ss_pred eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~ 483 (527)
++.||++|+|++ +.| .+++||++|.|+++|.|+++.+..+ +.|+++++|.+++||+++.
T Consensus 265 ~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~-------------------~~I~~~~~i~~~~ig~~~~ 325 (456)
T 2v0h_A 265 TLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGND-------------------VEIKPYSVLEDSIVGEKAA 325 (456)
T ss_dssp EEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTT-------------------CEECSSCEEEEEEECTTCE
T ss_pred ceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCC-------------------CEEcCCeEEccCcCCCCcE
Confidence 566677777764 445 5689999999999999997777666 7888888888888888888
Q ss_pred ECCCcEEeCCCCcCCCccCCCce
Q 009720 484 IGKDVVIVNKDDVQEADRPELGF 506 (527)
Q Consensus 484 Ig~~~~i~~~~~v~~~~~~~~~~ 506 (527)
||+++.|.....+++++.+++++
T Consensus 326 I~~~~~i~~~~~ig~~~~ig~~~ 348 (456)
T 2v0h_A 326 IGPFSRLRPGAELAAETHVGNFV 348 (456)
T ss_dssp ECSSEEECTTCEECTTCEEEEEE
T ss_pred ECCccEECCCCEECCCCEECCCC
Confidence 88888777655555544444333
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-09 Score=106.89 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=37.6
Q ss_pred eEeCCCcEEe----eeEEcCCCEECCCcEEeCCC-------------------CcCCCccCCCceEEecCeEEEccCCEe
Q 009720 465 IGVGRNTKIR----NCIIDKNVKIGKDVVIVNKD-------------------DVQEADRPELGFYIRSGITIIMEKATI 521 (527)
Q Consensus 465 ~~Ig~~~~I~----~~iI~~~~~Ig~~~~i~~~~-------------------~v~~~~~~~~~~~i~~g~~vi~~~~~I 521 (527)
+.||++++|. ++.||+++.||++|.|.+.+ .+++++.++.++.|..| ++||++|+|
T Consensus 112 ~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~g-v~IG~~~~I 190 (252)
T 3jqy_B 112 TTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKG-VSVGSGSVI 190 (252)
T ss_dssp CEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTT-CEECTTCEE
T ss_pred CEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCC-CEECCCCEE
Confidence 6666666666 66677777777777666652 34455555555555555 344666666
Q ss_pred CCCccC
Q 009720 522 EDGMVI 527 (527)
Q Consensus 522 ~~g~vi 527 (527)
++|++|
T Consensus 191 gagsvV 196 (252)
T 3jqy_B 191 GYGSIV 196 (252)
T ss_dssp CTTCEE
T ss_pred CCCCEE
Confidence 666653
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-09 Score=97.99 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=74.6
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-----eeE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----NCI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-----~~i 477 (527)
++.|.++|.|. .++.||++|.|++++.|... +.+|.+ +.|++++.|. +++
T Consensus 16 ~~~I~~~a~i~----g~v~IG~~~~I~~~~~i~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~ 73 (173)
T 1v3w_A 16 SAFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKY------------------SNVQDNVSIHTSHGYPTE 73 (173)
T ss_dssp TCEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBTTBCEE
T ss_pred CCEECCCCEEe----CCEEECCCCEECCCeEEecCCceEEECCC------------------CEECCCcEEEecCCCCeE
Confidence 45555555554 35789999999999999874 666665 8999999997 689
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
||+++.|+.++.|.+ ..+++++.++.++.|..| ++||++++|++|++|
T Consensus 74 Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Ig~~s~V 121 (173)
T 1v3w_A 74 IGEYVTIGHNAMVHG-AKVGNYVIIGISSVILDG-AKIGDHVIIGAGAVV 121 (173)
T ss_dssp ECSSCEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred ECCCCEECCCCEECC-CEECCCCEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 999999999998865 457777777777777776 445777777777654
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=113.04 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=77.8
Q ss_pred CCCCCCCCCCccCCCeeee-------ceeee-eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchh
Q 009720 382 DPKTPFYTSPRFLPPTKID-------NCRIK-DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTES 452 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~-------~~~i~-~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~ 452 (527)
.+...|...+.+.+++.|+ ++.|. +++||++|.|++ +.|.+++||+++.|+.++.|+++++..+
T Consensus 248 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~------- 320 (401)
T 2ggo_A 248 EEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAED------- 320 (401)
T ss_dssp CTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTT-------
T ss_pred cCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCC-------
Confidence 3444444555444444443 24443 688899999995 7888999999999999999988877666
Q ss_pred hHHhhhcCCccceEeCCCcEEe-------------------------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceE
Q 009720 453 EIASLLAEGKVPIGVGRNTKIR-------------------------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFY 507 (527)
Q Consensus 453 ~~~~~~~~~~~~~~Ig~~~~I~-------------------------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~ 507 (527)
+.||.++.|. .++||+++.||.+++|. ++.++++++.
T Consensus 321 ------------~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~------~gv~Ig~~~v 382 (401)
T 2ggo_A 321 ------------VNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTIL------PGVKIGAYAR 382 (401)
T ss_dssp ------------CEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEEC------TTCEECTTCE
T ss_pred ------------cEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEc------CCcEECCCcE
Confidence 8999999986 45555555555555554 4455666666
Q ss_pred EecCeEEEccCCEeCCCcc
Q 009720 508 IRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 508 i~~g~~vi~~~~~I~~g~v 526 (527)
|..|. +|.++ |+++++
T Consensus 383 i~~gs-vv~~~--vp~~~~ 398 (401)
T 2ggo_A 383 IYPGA-VVNRD--VGYGEF 398 (401)
T ss_dssp ECTTC-EECSC--BCTTCE
T ss_pred ECCCC-eEccc--cCCCcE
Confidence 66663 33443 555554
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.94 E-value=4.3e-09 Score=103.36 Aligned_cols=98 Identities=10% Similarity=0.135 Sum_probs=77.2
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeE----EeCCcccCchhhHHhhhcCCccceEeCCCcEEe-------
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTV----MLGADYYQTESEIASLLAEGKVPIGVGRNTKIR------- 474 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~------- 474 (527)
++.|+++|.|. .++.||++|.|+++|.|.... .+|.+ +.|++++.|.
T Consensus 65 ~~~I~~~a~I~----g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~~~~ 122 (247)
T 1qre_A 65 TAYIDPQASVI----GEVTIGANVMVSPMASIRSDEGMPIFVGDR------------------SNVQDGVVLHALETINE 122 (247)
T ss_dssp TCEECTTCEEE----ESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECCSBCT
T ss_pred CcEECCCCEEe----CCcEECCCCEECCCcEEecCCCCCEEECCC------------------CEECCCeEEEecccccc
Confidence 45555666554 357899999999999997753 55554 8899999886
Q ss_pred -----------------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 475 -----------------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 475 -----------------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+++||+++.||.++.|.+...+++++.++.++.|.+ ++||++++|++|++|
T Consensus 123 ~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~--v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 123 EGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK--SKVGNNCVLEPRSAA 190 (247)
T ss_dssp TSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECTTCEE
T ss_pred cCcccccceeeccCccCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec--eEECCCCEECCCCEE
Confidence 389999999999999987667888888888888876 777888888888764
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-09 Score=108.85 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=56.4
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
++.|+++|.|++ +++||++|+|+++|+|+++.+.++ +.|+++++|.+++|+.++.|+
T Consensus 71 ~a~I~~~~~I~g----~~~Ig~~~~Ig~~~~I~~~~Ig~~-------------------~~I~~~s~I~~s~I~~~~~I~ 127 (334)
T 2pig_A 71 GTEITGNARITQ----PCTLYNNVRIGDNVWIDRADISDG-------------------ARISDNVTIQSSSVREECAIY 127 (334)
T ss_dssp TCEECTTCEEES----SCEEESSCEECTTCEEESCEEESS-------------------CEECTTCEEESCEEESSEEEC
T ss_pred CcEECCCcEEee----eeeECCCcEECCCCEEEeEEEcCC-------------------CEEeCCcEEeccEEcCCeEEe
Confidence 677788888874 389999999999999999988888 899999999988888888887
Q ss_pred CCcEEeCCCCc
Q 009720 486 KDVVIVNKDDV 496 (527)
Q Consensus 486 ~~~~i~~~~~v 496 (527)
.++++.+...+
T Consensus 128 ~~~~i~~~s~I 138 (334)
T 2pig_A 128 GDARVLNQSEI 138 (334)
T ss_dssp TTCEEESSCEE
T ss_pred cCCEEeCCEEE
Confidence 77777655544
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-09 Score=102.45 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=12.0
Q ss_pred EEecCCHHHHHHHHHHhhcc
Q 009720 355 WEDIGTIKSFYEANMALTKE 374 (527)
Q Consensus 355 w~dIgt~~d~~~An~~ll~~ 374 (527)
+.-|++++...+....+.+.
T Consensus 75 ~iAIg~~~~R~~i~~~l~~~ 94 (220)
T 4ea9_A 75 FVAIGDNRLRQKLGRKARDH 94 (220)
T ss_dssp EECCCCHHHHHHHHHHHHHT
T ss_pred EEecCCHHHHHHHHHHHHhc
Confidence 44577776666666555543
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=103.41 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=73.1
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE----eeeEEcCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI----RNCIIDKN 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I----~~~iI~~~ 481 (527)
++.|+++|.|... .+..||++|.|+++|.|...+.+|.+ +.|+.++.| .+++||++
T Consensus 38 ~~~I~~~~~i~~~--~~v~IG~~~~I~~~~~I~~~v~IG~~------------------~~I~~~~~I~~~~~~~~IG~~ 97 (205)
T 3vbi_A 38 NVLISKKASIYNP--GVISIGNNVRIDDFCILSGKVTIGSY------------------SHIAAYTALYGGEVGIEMYDF 97 (205)
T ss_dssp SEEEBTTSEEESG--GGEEECSSEEECTTCEEEEEEEECSS------------------EEECTTCEEEEEEEEEEECTT
T ss_pred CCEECCCeEEccC--CeeEECCCCEECCCCEEccceEECCC------------------CEECCCeEEEcCCccEEECCC
Confidence 4555555555521 24788888888888888877777776 888888888 34888888
Q ss_pred CEECCCcEE-------------------------eCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 482 VKIGKDVVI-------------------------VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 482 ~~Ig~~~~i-------------------------~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.|+++|+| .....+++++.++.++.|..| ++||++|+|++|++|
T Consensus 98 ~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g-v~Ig~~~~Ig~gsvV 167 (205)
T 3vbi_A 98 ANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN-VVIGEGVAVGAMSMV 167 (205)
T ss_dssp CEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSS-CEECTTCEECTTCEE
T ss_pred CEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCC-CEECCCCEEcCCCEE
Confidence 888888888 344556666777777777666 445888888877764
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-09 Score=113.56 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=19.1
Q ss_pred eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEe
Q 009720 406 DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVML 443 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~ 443 (527)
++.||++|.|++ +.|.+++||++|.|+++|.|+++.+.
T Consensus 286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig 324 (459)
T 4fce_A 286 HVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLD 324 (459)
T ss_dssp EEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEEC
T ss_pred ceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEEC
Confidence 345555555552 44455555555555555555443333
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.6e-09 Score=100.96 Aligned_cols=107 Identities=15% Similarity=0.284 Sum_probs=52.8
Q ss_pred CCCccCCCCCCCCCCCccCCCeeeec-eee-e------eeEECCCCEEc-ceeEe-ecEEcCCcEECCCCEEeeeEEeCC
Q 009720 376 PAFHFYDPKTPFYTSPRFLPPTKIDN-CRI-K------DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 376 ~~~~~~~~~~~i~~~~~~~~p~~i~~-~~i-~------~s~I~~g~~I~-~~~i~-~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
+.+.+..+.+.+++.+.+.+++.|.+ |.| . +++||++|.|+ ++.|. +++||++|+|+++|.|.+.
T Consensus 83 ~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~----- 157 (240)
T 3r8y_A 83 PMLDLKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGV----- 157 (240)
T ss_dssp CBCCCTTCSSEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCC-----
T ss_pred chhhccCCCCEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCC-----
Confidence 34445556677777777777777743 555 3 45555555554 23332 4455555555555554431
Q ss_pred cccCchhhHHhhhcCCccceEeCCCcEE-eeeEEcCCCEECCCcEEeC
Q 009720 446 DYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~ 492 (527)
.... ......++++ +.||.++.| .+++||+++.|++++++..
T Consensus 158 -~~~~-~~~~~~Ig~~---~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~ 200 (240)
T 3r8y_A 158 -IEPP-SAKPVIVEDD---VVIGANVVVLEGVTVGKGAVVAAGAVVTE 200 (240)
T ss_dssp -CSCT-TSCCCEECTT---CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred -ccCC-CCCCcEECCC---CEECCCCEECCCcEECCCCEECCCCEECC
Confidence 1100 0000111111 556665555 4566666666666665543
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.6e-09 Score=111.53 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=71.2
Q ss_pred CCCCCCCCCCccCCCeeeec-eeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhc
Q 009720 382 DPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA 459 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~~-~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~ 459 (527)
++.+.+.....+.+++.|.. |.|.+++||++|.|++ +.|.+|+||++|.|+.+|.|.++++..+
T Consensus 283 ~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~-------------- 348 (496)
T 3c8v_A 283 SGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDM-------------- 348 (496)
T ss_dssp CTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEET--------------
T ss_pred CCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCC--------------
Confidence 33333333444455555543 6667788888888884 7888888888888888888888666655
Q ss_pred CCccceEeCCCcEEeee-----EEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 460 EGKVPIGVGRNTKIRNC-----IIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 460 ~~~~~~~Ig~~~~I~~~-----iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
+.||.++.|..+ +||+++.||.++++.. +++..+++++.+
T Consensus 349 -----v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~----~~~~~I~~~s~v 393 (496)
T 3c8v_A 349 -----IFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDL----EEPLEIPAGHLV 393 (496)
T ss_dssp -----CEECTTCEEECCSSSCEEECTTCEECTTCEEEC----SSCEEECSSEEE
T ss_pred -----cEECCCCEEeCCCCcceEECCCCEECCCCEEec----CCCcEeCCCCEE
Confidence 888888888755 7888888888887753 233444444444
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.7e-09 Score=105.95 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=32.5
Q ss_pred eEeCCCcEEee---------eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeE
Q 009720 465 IGVGRNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT 513 (527)
Q Consensus 465 ~~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~ 513 (527)
+.||.++.|.. ++||+|+.||.|++| ...+++++.++.|++|..+..
T Consensus 237 v~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~ 292 (347)
T 3r5d_A 237 SDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTK 292 (347)
T ss_dssp EEECTTCEECC------CCCCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTCE
T ss_pred CEECCCCEEccccCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCE
Confidence 77777777764 788888888888888 555656555555555544433
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-07 Score=100.13 Aligned_cols=351 Identities=14% Similarity=0.170 Sum_probs=187.9
Q ss_pred CCCCCceEEEEEeCCCCCccccCccCCCccceeeC-CcchhHHHHHHHHHHc----CCC-EEEEEeccC-chhHHHHHHH
Q 009720 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIAR 161 (527)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~-~~~i~~hl~~ 161 (527)
+....++.+|+||||.||||+ ...||.++||. |+ +++++.++++... |.. ..+|.+.+. .+...+++.
T Consensus 122 ~~~l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgk-tflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~- 196 (528)
T 3r3i_A 122 SSVLNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNEN-TFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQ- 196 (528)
T ss_dssp CTTCTTEEEEEECCCBCTTTT---CSSBGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCG-
T ss_pred hhhcCceEEEEeCCCCccccC---CCCCccceecCCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHH-
Confidence 445788999999999999995 46899999997 77 9999999998775 532 557777664 455655553
Q ss_pred hh--ccCCc-ccCCCeEEEecc-ccCCC--------CCCCCc-ccChHHHHHHH--HHHHHhhhcCCCCeEEEEcCceee
Q 009720 162 TY--FGNGT-NFGDGFVEVLAA-TQTPG--------ESGKNW-FQGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLY 226 (527)
Q Consensus 162 ~y--~~~~~-~~~~~~V~vl~~-~q~~~--------~~~~~~-~~Gta~al~~a--~~~l~~~~~~~~e~~Lvl~gD~l~ 226 (527)
+| |+... -|.++.+..+.. ....- .....| +-|.|+..... ...++++...+.+.+.+.+.|++.
T Consensus 197 k~~~fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlg 276 (528)
T 3r3i_A 197 KYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLG 276 (528)
T ss_dssp GGTTSSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTT
T ss_pred hcCccCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcc
Confidence 22 32110 011111111110 00000 001123 35666544332 234666656788999999999965
Q ss_pred -cCCHHHHHHHHHHc----CCcEEEEEEEcCCCCCCCceEEEECCCCc--eEEEEecCCccccccccccccccCCCcccc
Q 009720 227 -RMDYMDFIQSHVDR----DADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (527)
Q Consensus 227 -~~dl~~ll~~h~~~----~ad~tv~~~~~~~~~~~~~g~v~~D~~g~--V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~ 299 (527)
..|. .++..+.+. ++++.+-+.+...+. ..-|.+.. .+|+ +.++.|-|.....+ .+ +.
T Consensus 277 a~vDp-~~Lg~~~~~~~~~~~d~~~kVv~Kt~~d-ek~Gvl~~-~dGk~~vvEyseip~e~~~~----~~---g~----- 341 (528)
T 3r3i_A 277 ATVDL-YILNHLMNPPNGKRCEFVMEVTNKTRAD-VKGGTLTQ-YEGKLRLVEIAQVPKAHVDE----FK---SV----- 341 (528)
T ss_dssp CCCCH-HHHHHHSSCSSSCCCSEEEEECCCCTTC-CSSCEEEC-SSSSCEEECTTSSCGGGTTT----SS---CS-----
T ss_pred cccCH-HHHHHHHhcccccCCcEEEEEeEccccC-CcccEEEE-ECCeEEEEEecCCChhHhhc----cC---Cc-----
Confidence 3443 466667666 788777665443321 23454433 3444 44444433321100 00 00
Q ss_pred ccCCceeeeeEEEEeHHHHHHHHHhhCCCC--------Cc----------hhhhhHHhhhhcCceEEEEec-ceEEecCC
Q 009720 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTS--------ND----------FGSEIIPAAIMEHDVQAYIFR-DYWEDIGT 360 (527)
Q Consensus 300 ~~~~~l~~~GIYif~~~iL~~ll~~~~~~~--------~d----------~~~dii~~li~~~~V~~~~~~-g~w~dIgt 360 (527)
..-.+.|+....|+-+.+.++++...... .+ +..++++.+ .+..++.+. .-+.-+.+
T Consensus 342 -~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f---~~~~~i~VpR~rF~PvKn 417 (528)
T 3r3i_A 342 -SKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSF---ENSLGINVPRSRFLPVKT 417 (528)
T ss_dssp -SSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTS---SSCCCEECCGGGCCBCCS
T ss_pred -ccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhc---cCcEEEEEehHHcccccc
Confidence 11245799999999999998887642110 00 111112111 233344443 23778889
Q ss_pred HHHHHHHHHHhhccCCCCcc-CCCCCCCCCCCccCCCeeeec--eeeee--eEECCCCEEcceeEeecEEcCCcEECCCC
Q 009720 361 IKSFYEANMALTKESPAFHF-YDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISHGCFLRECTVEHSIVGERSRLDYGV 435 (527)
Q Consensus 361 ~~d~~~An~~ll~~~~~~~~-~~~~~~i~~~~~~~~p~~i~~--~~i~~--s~I~~g~~I~~~~i~~svIg~~~~I~~~~ 435 (527)
..|++-...++-.-... .+ ..|.....+. |-.+++. .+|.+ ..+..--.|.++ .+-.|--++..|.++
T Consensus 418 ~sdLll~~Sdly~l~~g-~l~~~~~r~~~~~----P~v~L~~~~~~v~~f~~rf~~iP~l~~~--~~LtV~Gdv~fg~~v 490 (528)
T 3r3i_A 418 TSDLLLVMSNLYSLNAG-SLTMSEKREFPTV----PLVKLGSSFTKVQDYLRRFESIPDMLEL--DHLTVSGDVTFGKNV 490 (528)
T ss_dssp HHHHHHHHSTTSEEETT-EEECCSSCSSCCC----CEEEECTTSCSHHHHHHHCSSCCEEEEE--EEEEEESEEECCTTC
T ss_pred hHHHHHHhcceeEeeCC-eEEecccccCCCC----CEEEeCcccCcHHHHHHhCCCCCCcccC--CEEEEecceEECCCc
Confidence 99988666544321110 11 1111111111 1122221 11111 112222222222 456777889999999
Q ss_pred EEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEE
Q 009720 436 ELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (527)
Q Consensus 436 ~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~I 484 (527)
++++++++.++ ...|+.|.++++++|++|-.|.+|
T Consensus 491 ~l~G~v~i~~~--------------~g~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 491 SLKGTVIIIAN--------------HGDRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp EEEEEEEEECC--------------TTCEEECCTTCEEEEEEEC-----
T ss_pred EEEEEEEEEcC--------------CCCceecCCCCEEeccEEeccccc
Confidence 99999988552 234589999999999999877766
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=102.95 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=23.9
Q ss_pred CccCCCeeeec-eeeeeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeC
Q 009720 391 PRFLPPTKIDN-CRIKDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 391 ~~~~~p~~i~~-~~i~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~ 444 (527)
+.+.+++.|.+ +.|..++|+.+|.|++ |.|. +++||.+|.||++|.|...+.++
T Consensus 136 a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~ 192 (304)
T 3eg4_A 136 CIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIG 192 (304)
T ss_dssp CEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEEC
T ss_pred EEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEEC
Confidence 33334444422 3333334444444442 3332 25555555555555555444443
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.7e-09 Score=104.63 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=38.7
Q ss_pred eEeCCCcEEee---------eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEc-cCCEeCC
Q 009720 465 IGVGRNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIM-EKATIED 523 (527)
Q Consensus 465 ~~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~-~~~~I~~ 523 (527)
+.|+.++.|.. ++||+|+.||.|++| ...+++++.++.|++|..+..|+. ++.++++
T Consensus 214 v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~~~~g~~v~a 280 (332)
T 3fsy_A 214 SDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVTMPDSNSVKA 280 (332)
T ss_dssp CEECTTCEECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEECTTSCEEEG
T ss_pred CEECCCCEEcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEeCCCCEEEh
Confidence 67777777753 888888888888888 566777777777777755554432 3444443
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-08 Score=96.44 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=13.3
Q ss_pred eEECCCCEEcc-eeEee----cEEcCCcEECC
Q 009720 407 AIISHGCFLRE-CTVEH----SIVGERSRLDY 433 (527)
Q Consensus 407 s~I~~g~~I~~-~~i~~----svIg~~~~I~~ 433 (527)
+.||++|.|++ +.+.. +.||++|.|++
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~ 90 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGN 90 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECS
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECC
Confidence 45555555553 33331 45555555554
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=100.69 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCCccCCCeeeec-eeeeeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccce
Q 009720 389 TSPRFLPPTKIDN-CRIKDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI 465 (527)
Q Consensus 389 ~~~~~~~p~~i~~-~~i~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 465 (527)
+.+.+.+++.|.+ +.|...+|+.++.|++ +.|. +++||.+|.||++|.|...+.+++. +++. ..-|+
T Consensus 109 p~a~I~~~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~-~~~~---------~~~~v 178 (276)
T 3gos_A 109 PPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV-LEPL---------QANPT 178 (276)
T ss_dssp TTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCC-CSST---------TSCCC
T ss_pred CCcEECCCCEECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCc-cccC---------CCCCe
Confidence 3334444444432 4442223444444442 3332 4566666666666666555544331 1110 01127
Q ss_pred EeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCc
Q 009720 466 GVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELG 505 (527)
Q Consensus 466 ~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~ 505 (527)
.||++|.|. +|+|.++++||++|+|+.+..|..+.++++.
T Consensus 179 ~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~ 219 (276)
T 3gos_A 179 IIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDR 219 (276)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEET
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccc
Confidence 788877774 7777777777777777776666665555443
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-08 Score=94.17 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=38.5
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-eEEcCCCEE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKI 484 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-~iI~~~~~I 484 (527)
+++|+++|.|+. ++.||++|.|+.+|.|.+.+.++++ +.|+.++.|.+ |+||+++.|
T Consensus 95 g~~I~~~~~I~~----~~~IG~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~Ig~~~~I 152 (194)
T 3bfp_A 95 GILIMPYVVINA----KAKIEKGVILNTSSVIEHECVIGEF------------------SHVSVGAKCAGNVKIGKNCFL 152 (194)
T ss_dssp CCEECTTCEECT----TCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTCEE
T ss_pred CcEEcCCCEECC----CCEECCCCEECCCCEEcCCCEECCC------------------CEECCCCEECCCcEECCCCEE
Confidence 566666666653 2556666666666666533333332 66666666654 666666666
Q ss_pred CCCcEEeCC
Q 009720 485 GKDVVIVNK 493 (527)
Q Consensus 485 g~~~~i~~~ 493 (527)
|.+++|...
T Consensus 153 g~~~~i~~~ 161 (194)
T 3bfp_A 153 GINSCVLPN 161 (194)
T ss_dssp CTTCEECTT
T ss_pred cCCCEECCC
Confidence 666666554
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-08 Score=101.47 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=29.4
Q ss_pred CCCCCCCccCCCeeeec-eeeeeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeC
Q 009720 385 TPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 385 ~~i~~~~~~~~p~~i~~-~~i~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~ 444 (527)
..+.+.+.+.+++.|.+ |.|...+|+.+|.|++ +.|. +++||.+|.||++|.|...+.++
T Consensus 146 ~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~ 208 (316)
T 3tk8_A 146 FRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIG 208 (316)
T ss_dssp CEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEEC
T ss_pred cEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEEC
Confidence 34455555556666643 4443334444444442 3332 25566666666666665444333
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=9.9e-08 Score=91.64 Aligned_cols=16 Identities=6% Similarity=0.248 Sum_probs=6.4
Q ss_pred eEEcCCCEECCCcEEe
Q 009720 476 CIIDKNVKIGKDVVIV 491 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~ 491 (527)
++||+++.||.+++|.
T Consensus 166 v~Ig~~~~Ig~~~~i~ 181 (220)
T 4ea9_A 166 VSVGERAFLGVGARVI 181 (220)
T ss_dssp CEECTTCEECTTCEEC
T ss_pred CEECCCCEECCCCEEc
Confidence 3344444444444333
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=98.39 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=22.2
Q ss_pred eEeCCCcEEeeeEEcCCCEECCCcEEeCCCCc
Q 009720 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDV 496 (527)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v 496 (527)
+.||.|+.| ++.||+|+.||++++|..+..+
T Consensus 240 v~IGanAtI-gVtIGd~~iIGAGSVVtkdt~I 270 (332)
T 3fsy_A 240 CLLGANSGL-GISLGDDCVVEAGLYVTAGTRV 270 (332)
T ss_dssp CEECTTCEE-CSCBCSSCEECTTCEECTTCEE
T ss_pred CEECCCCEE-eeEECCCCEECCCCEECCCCEE
Confidence 677777777 7777777777777777765444
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-08 Score=105.65 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=53.2
Q ss_pred eEECCCCEEcc------eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC
Q 009720 407 AIISHGCFLRE------CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (527)
Q Consensus 407 s~I~~g~~I~~------~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~ 480 (527)
+.|.+.+.|++ +.+.++.||++|.| .++.|.++++..+ |.||+++.|.+|+|++
T Consensus 303 ~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~-------------------~~I~~~~~i~~~~i~~ 362 (420)
T 3brk_X 303 AEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALNRSLLFTG-------------------VRANSYSRLENAVVLP 362 (420)
T ss_dssp CCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEESCEECTT-------------------CEECTTCEEEEEEECT
T ss_pred cccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEeCcEEcCC-------------------CEECCCCEEcceEEcC
Confidence 34445555542 45568899999999 8999988777666 8999999999999999
Q ss_pred CCEECCCcEEeC
Q 009720 481 NVKIGKDVVIVN 492 (527)
Q Consensus 481 ~~~Ig~~~~i~~ 492 (527)
++.||.++.|.+
T Consensus 363 ~~~i~~~~~i~~ 374 (420)
T 3brk_X 363 SVKIGRHAQLSN 374 (420)
T ss_dssp TCEECTTCEEEE
T ss_pred CCEECCCCEEec
Confidence 999999999975
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-08 Score=96.45 Aligned_cols=85 Identities=22% Similarity=0.351 Sum_probs=56.1
Q ss_pred eeEECCCCEEcc-eeE---eecEEcCCcEECCCCEEee---eEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee---
Q 009720 406 DAIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN--- 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~--- 475 (527)
++.||++|.|++ +.| .+++||++|.|+++|.|.. .+.+|++ |.||.++.|.+
T Consensus 85 ~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~------------------~~Ig~~~~I~~~~~ 146 (252)
T 3jqy_B 85 YVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHD------------------CMIARDVILRASDG 146 (252)
T ss_dssp EEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTT------------------CEECSSEEEECSCS
T ss_pred eEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCC------------------CEEcCCcEEecCCC
Confidence 456777777774 444 2577888888888888873 4444444 77888887765
Q ss_pred -----------------eEEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 476 -----------------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 476 -----------------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
++||+++.||++++|.....+++++.++.++.|
T Consensus 147 ~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV 196 (252)
T 3jqy_B 147 HPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIV 196 (252)
T ss_dssp SCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEE
T ss_pred cccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEE
Confidence 477888888888777766555544444444433
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-08 Score=105.36 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=19.4
Q ss_pred EecceEEecCC--HHHHHHHHHHhhc
Q 009720 350 IFRDYWEDIGT--IKSFYEANMALTK 373 (527)
Q Consensus 350 ~~~g~w~dIgt--~~d~~~An~~ll~ 373 (527)
....+|.|.|+ |++|......+..
T Consensus 167 l~~~~Wt~~G~~~~~~f~~~~~~l~~ 192 (387)
T 2rij_A 167 LSNVAWSDDKPIELEYLRANEMRLKM 192 (387)
T ss_dssp SCCEEEETTEEECHHHHHHHHHHHHH
T ss_pred CceeeeccCcccCHHHHHHHHHHHHh
Confidence 34568999999 7899999888874
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-08 Score=91.67 Aligned_cols=36 Identities=8% Similarity=0.161 Sum_probs=25.9
Q ss_pred eeEECCCCEEc-ceeEe---ecEEcCCcEECCCCEEeeeE
Q 009720 406 DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTV 441 (527)
Q Consensus 406 ~s~I~~g~~I~-~~~i~---~svIg~~~~I~~~~~I~~~~ 441 (527)
++.||++|+|+ ++.|. ..+||++|.|+++|.|..+.
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~ 115 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTAS 115 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEE
T ss_pred CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCC
Confidence 56666666666 34442 34899999999999997764
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=101.81 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=15.7
Q ss_pred eeEEcCCCEECCCcEEeCCCCcCCCccCCC
Q 009720 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPEL 504 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~ 504 (527)
+++||+||.||.+++|.+...+++++.++.
T Consensus 223 ~~~IGd~v~IGaga~Ilggv~IG~~a~IGa 252 (313)
T 3q1x_A 223 HPTVGDYVTIGTGAKVLGNIIVGSHVRIGA 252 (313)
T ss_dssp SCEECSSCEECTTCEEESSCEECSSEEECT
T ss_pred CCEECCCCEECCCCEECCCcEECCCCEECC
Confidence 346666666666666655443333333333
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-06 Score=90.17 Aligned_cols=345 Identities=13% Similarity=0.152 Sum_probs=194.9
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceee-CCcchhHHHHHHHHHHc----CCC-EEEEEeccC-chhHHHHHHH-hhc
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV-AGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIAR-TYF 164 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpI-gGk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~-~~~i~~hl~~-~y~ 164 (527)
+++..|+||||.||||+ ..-||.++|| .|+ .+++..++++... |.. ..+|.|.++ .+...+++.+ .||
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgk-sflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~F 150 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQ-TFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTL 150 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCccc
Confidence 47999999999999995 4689999999 677 9999999988763 432 567888764 5667777753 235
Q ss_pred cCC----cccCCCeEEEeccccC-----CCCCCCCcc-cChHHHHHHH--HHHHHhhhcCCCCeEEEEcCceeecCCHHH
Q 009720 165 GNG----TNFGDGFVEVLAATQT-----PGESGKNWF-QGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLYRMDYMD 232 (527)
Q Consensus 165 ~~~----~~~~~~~V~vl~~~q~-----~~~~~~~~~-~Gta~al~~a--~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ 232 (527)
+.. .-|.++.+..+..... .....-.|. -|.++..... ...++++...+.+.+.+.+.|++...-=-.
T Consensus 151 gl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~ 230 (484)
T 3gue_A 151 YEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR 230 (484)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH
T ss_pred CCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH
Confidence 421 1222333333322111 000011232 5776644433 234666656788999999999976533256
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCCceE-EEE--------CCCCc--eEEEEecCCccccccccccccccCCCcccccc
Q 009720 233 FIQSHVDRDADITISCAAVGESRASDYGL-VKI--------DNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 301 (527)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g~-v~~--------D~~g~--V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~ 301 (527)
++..+.++++++.+-+.+...+. ..-|+ +.. ..+|+ +.++.|-|..... +.. +..
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~d-ekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~-~f~-----------~~~- 296 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTESD-KKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDED-SFQ-----------NIA- 296 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTTC-CSSEEEEEEC--------CCCEEEEEEGGGSCGGGHH-HHT-----------CTT-
T ss_pred HHHHHHhcCCCEEEEEEECCCCC-CceeEEEEEccccccccCCCCCEEEEEeccCCHHHHh-hhc-----------CCC-
Confidence 78888889999998887765532 23553 333 12454 3444444432210 000 001
Q ss_pred CCceeeeeEEEEeHHHHHHHHHhhC--CC-------------C---------CchhhhhHHhhhhcCceEEEEec-ceEE
Q 009720 302 CPYVASMGVYVFKKDVLFKLLRWRY--PT-------------S---------NDFGSEIIPAAIMEHDVQAYIFR-DYWE 356 (527)
Q Consensus 302 ~~~l~~~GIYif~~~iL~~ll~~~~--~~-------------~---------~d~~~dii~~li~~~~V~~~~~~-g~w~ 356 (527)
...+-+++-..++-..+.++++... .. . +.|..++++.+ .+..++.+. .-+.
T Consensus 297 g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R~rF~ 373 (484)
T 3gue_A 297 KHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPRERFA 373 (484)
T ss_dssp TSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCGGGCC
T ss_pred CceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEEChhhcc
Confidence 1134488888999888877877641 00 0 01222333322 355666654 3467
Q ss_pred ecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeec---eeeee--eEECCCC-EEcceeEeecEEcCCcE
Q 009720 357 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN---CRIKD--AIISHGC-FLRECTVEHSIVGERSR 430 (527)
Q Consensus 357 dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~---~~i~~--s~I~~g~-~I~~~~i~~svIg~~~~ 430 (527)
-+.+..|++....++..-............... .|-.++++ .+|.+ ..+.+|. .|.++ .+-.|--.+.
T Consensus 374 PvKn~sdLl~~~Sdly~l~~~~~l~~~~~~~~~----~P~v~L~~~~~~~v~~f~~rf~~giPsl~~~--~~L~V~Gdv~ 447 (484)
T 3gue_A 374 PVKTCSDLLALRSDAYQVTEDQRLVLCEERNGK----PPAIDLDGEHYKMIDGFEKLVKGGVPSLRQC--TSLTVRGLVE 447 (484)
T ss_dssp CCSSHHHHHHHHSTTEEECTTSCEEECGGGTTC----CCEEEECTTTSSSHHHHHHHHTTCCCBCTTE--EEEEEESSEE
T ss_pred ccccchHHHHHhhhceeccCCceEEeccccCCC----CCeEEECchhcCcHHHHHHhcCCCCCChhhC--CEEEEecceE
Confidence 788888888776555432221111100000111 11123321 12211 2222222 22233 4557777889
Q ss_pred ECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEE
Q 009720 431 LDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 478 (527)
Q Consensus 431 I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI 478 (527)
.|+++++++++++.+. ...|+.|.+++++.|++|
T Consensus 448 fg~~v~l~G~v~i~~~--------------~g~~~~ip~g~~l~~~~~ 481 (484)
T 3gue_A 448 FGADVSVRGNVVIKNL--------------KEEPLIIGSGRVLDNEVV 481 (484)
T ss_dssp ECTTCEEEEEEEEEEC--------------SSSCEEECTTCEEESCEE
T ss_pred ECCCcEEEEEEEEEcC--------------CCCeeecCCCCEecceec
Confidence 9999999999888652 224588999999988876
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.63 E-value=6.4e-08 Score=91.85 Aligned_cols=50 Identities=8% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCccCCCeeeeceeeeeeEECCCCEEcc-eeEe---ecEEcCCcEECCCCEEeeeE
Q 009720 390 SPRFLPPTKIDNCRIKDAIISHGCFLRE-CTVE---HSIVGERSRLDYGVELKDTV 441 (527)
Q Consensus 390 ~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~---~svIg~~~~I~~~~~I~~~~ 441 (527)
.+.+.+|..+.-. .++.||++|+|+. +.|. ..+||++|.|+++|.|..+.
T Consensus 60 ~~~i~~~~~~~~g--~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~ 113 (199)
T 3ftt_A 60 NVSISIPFDTDYG--WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTAT 113 (199)
T ss_dssp SEEECSSEEESSS--TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEE
T ss_pred CeEEeCCEEEEec--CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCC
Confidence 4445556655210 1455566666652 4442 35999999999999996653
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.8e-08 Score=90.83 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=31.9
Q ss_pred CCCCccCCCeeeeceeeeeeEECCCCEEcc-eeEe---ecEEcCCcEECCCCEEeee
Q 009720 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTVE---HSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 388 ~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~---~svIg~~~~I~~~~~I~~~ 440 (527)
...+.+.+|..++-. .++.||++|+|+. |.|. ...||++|.|+++|.|...
T Consensus 60 g~~~~I~~~~~~~~g--~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~ 114 (188)
T 3srt_A 60 GKQINVEQNIRCDYG--YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTA 114 (188)
T ss_dssp CSCEEECSCEEESSS--TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECE
T ss_pred CCCCEEcCCEEEEeC--CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeC
Confidence 344555666665210 2556666666663 4443 2489999999999999654
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=89.35 Aligned_cols=50 Identities=14% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCccCCCeeeeceeeeeeEECCCCEEcc-eeEe---ecEEcCCcEECCCCEEeeeE
Q 009720 390 SPRFLPPTKIDNCRIKDAIISHGCFLRE-CTVE---HSIVGERSRLDYGVELKDTV 441 (527)
Q Consensus 390 ~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~---~svIg~~~~I~~~~~I~~~~ 441 (527)
.+.+.+|+.+.-. .++.||++|+|+. +.|. .+.||++|.|+++|.|.++.
T Consensus 64 ~~~I~~~~~~~~g--~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~ 117 (190)
T 3hjj_A 64 KAQINPDFRCDYG--YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTAT 117 (190)
T ss_dssp CCEECSSCEESSS--TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEE
T ss_pred CcEECCCEEEEeC--CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCC
Confidence 3445555554100 1445555555552 3342 46899999999999997654
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4.7e-08 Score=94.25 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=7.8
Q ss_pred cEEcCCcEECCCCEE
Q 009720 423 SIVGERSRLDYGVEL 437 (527)
Q Consensus 423 svIg~~~~I~~~~~I 437 (527)
++||++|.|+++|+|
T Consensus 67 v~IG~~~~Ig~~v~i 81 (220)
T 4hur_A 67 LIIGRFCSIGPGTTF 81 (220)
T ss_dssp EEECSSCEECTTCEE
T ss_pred eEECCCCEECCCCEE
Confidence 455555555555554
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-08 Score=98.08 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=20.1
Q ss_pred eEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcC
Q 009720 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
|.||.|+.| ++.||+|+.||++++|..+..+.
T Consensus 263 v~IGAnAtI-GVtIGd~~iIGAGSVVtkdt~I~ 294 (347)
T 3r5d_A 263 CLIGANAGI-GIPLGDRNIVEAGLYITAGTKVA 294 (347)
T ss_dssp CEECTTCEE-CSCBCTTCEECTTCEECTTCEEE
T ss_pred CEECCCCEE-eeEECCCCEECCCCEECCCCEEE
Confidence 666666666 66666666666666666555443
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-08 Score=103.29 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=77.2
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCC----
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN---- 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~---- 481 (527)
++.|+++++|.++.|.+++||++|.|+. |.|.++++..+ +.||+++.|.++++..+
T Consensus 314 ~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~-------------------~~Ig~~~~I~~~~~~~~~~~~ 373 (451)
T 1yp2_A 314 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLR-------------------SCISEGAIIEDSLLMGADYYE 373 (451)
T ss_dssp CCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEESCEECTT-------------------CEECTTCEEESCEECCCSSCC
T ss_pred CCccCCCeEEcceEEeCeEECCCCEEcc-eEEeccEECCC-------------------CEECCCCEEcCceEECCCCcc
Confidence 5677788888667778899999999986 88887777666 99999999998888777
Q ss_pred ---------------CEECCCcEEeCCCCcCCCccCCCceEEecCe-----EEEccCCEeCCCc
Q 009720 482 ---------------VKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGM 525 (527)
Q Consensus 482 ---------------~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~I~~g~ 525 (527)
+.||.++.|.+ ..+++++.++.++.|..+. .+||+++.|++|+
T Consensus 374 ~~~~~~~~~~~g~~~~~Ig~~~~i~~-~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~ 436 (451)
T 1yp2_A 374 TDADRKLLAAKGSVPIGIGKNCHIKR-AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 436 (451)
T ss_dssp CHHHHHHHHTTTCCCSEECTTCEEES-EEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE
T ss_pred cccccccccccCceeEEECCCCEEec-cEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE
Confidence 99999999876 5678888888888886542 2456665555554
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=102.46 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=64.9
Q ss_pred eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee--------e
Q 009720 406 DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN--------C 476 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~--------~ 476 (527)
+++|+++|.|++ +.+++|+||++|.|+..+.|.++.|..+ |.||.+|.+-| +
T Consensus 352 ~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~-------------------v~IG~g~i~~n~dg~~~~~t 412 (501)
T 3st8_A 352 GTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEY-------------------SNIGASSVFVNYDGTSKRRT 412 (501)
T ss_dssp TCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSS-------------------CEECTTCEEECBCSSSBCCE
T ss_pred CcEEccccccCCeEEEccceecCCcEEeccceecCceEcCC-------------------CEECCCEEEEcccCCcccCC
Confidence 578888888885 7788999999999999999999887776 89999998854 8
Q ss_pred EEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 477 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 477 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+||+||.||.++.|.... +++++++|..|
T Consensus 413 ~IGd~~~iG~~~~l~~~v------~Ig~~~~i~ag 441 (501)
T 3st8_A 413 TVGSHVRTGSDTMFVAPV------TIGDGAYTGAG 441 (501)
T ss_dssp EECTTCEECTTCEEESSE------EECTTCEECTT
T ss_pred EECCCcEECCCCEEcCCc------EECCCCEECCC
Confidence 888888888888887654 44555555555
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-07 Score=85.83 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=33.9
Q ss_pred CCCCccCCCeeeeceeeeeeEECCCCEEc-ceeEee---cEEcCCcEECCCCEEeee
Q 009720 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKDT 440 (527)
Q Consensus 388 ~~~~~~~~p~~i~~~~i~~s~I~~g~~I~-~~~i~~---svIg~~~~I~~~~~I~~~ 440 (527)
...+.+.||..+.- -.++.||++|+|+ +|.|.+ +.||++|.|+++|.|..+
T Consensus 59 g~~~~I~~~~~~~~--g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 113 (203)
T 1krr_A 59 GENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT 113 (203)
T ss_dssp CSSCEECSCEEESC--STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESE
T ss_pred CCCcEEcCCeEEEe--CCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecC
Confidence 33455666654320 0257777787777 355543 689999999999999754
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=7e-07 Score=85.46 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=8.4
Q ss_pred eeEEcCCCEECCCcEEeC
Q 009720 475 NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~ 492 (527)
+++||+++.|++++.|.+
T Consensus 100 ~i~IG~~~~Ig~~~~I~~ 117 (215)
T 2wlg_A 100 KISIGKDCMLAHGYEIRN 117 (215)
T ss_dssp EEEECTTCEECTTEEEES
T ss_pred CEEECCCCEEcCCEEEEC
Confidence 344444444444444443
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.3e-07 Score=86.54 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=3.2
Q ss_pred cCCcEECCC
Q 009720 426 GERSRLDYG 434 (527)
Q Consensus 426 g~~~~I~~~ 434 (527)
|+++.|+.+
T Consensus 79 G~~~~I~~~ 87 (203)
T 1krr_A 79 GRNFYANFN 87 (203)
T ss_dssp CSSCEECSC
T ss_pred CCeeEECCc
Confidence 333333333
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=82.61 Aligned_cols=14 Identities=7% Similarity=0.164 Sum_probs=5.7
Q ss_pred EEcCCcEECCCCEE
Q 009720 424 IVGERSRLDYGVEL 437 (527)
Q Consensus 424 vIg~~~~I~~~~~I 437 (527)
.||++|.|+++|.|
T Consensus 76 ~IG~~~~I~~~~~i 89 (199)
T 3ftt_A 76 KLGKNVYVNTNCYF 89 (199)
T ss_dssp EECSSEEECTTEEE
T ss_pred EECCCeEECCCeEE
Confidence 34444444444444
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.43 E-value=3e-07 Score=92.89 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=11.5
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEe
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 491 (527)
|.||.|++|. ++.||+|+.||+|+++.
T Consensus 258 V~IGaga~Il~gv~IGd~a~IGagsvV~ 285 (310)
T 3f1x_A 258 VIVYSNATILGRVTIGKGATVGGNIWVT 285 (310)
T ss_dssp CEECTTCEEESSCEECTTCEECSSCEEC
T ss_pred cEEcCCCEECCCcEECCCCEECCCCEEC
Confidence 3444444443 44444444444444443
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-06 Score=81.47 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=8.2
Q ss_pred cEEcCCcEECCCCEEe
Q 009720 423 SIVGERSRLDYGVELK 438 (527)
Q Consensus 423 svIg~~~~I~~~~~I~ 438 (527)
+.||+++.|+++|.|.
T Consensus 79 v~IG~~~~I~~~~~i~ 94 (190)
T 3hjj_A 79 IHVGKSFFANFNCVIL 94 (190)
T ss_dssp EEECTTCEECTTCEEE
T ss_pred eEECCceeeCCCeEEE
Confidence 4455555555555554
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-07 Score=92.47 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=24.9
Q ss_pred CCeEE--EEcCceeecCCHHHHHHHHHHcC
Q 009720 214 IENVA--ILCGDHLYRMDYMDFIQSHVDRD 241 (527)
Q Consensus 214 ~e~~L--vl~gD~l~~~dl~~ll~~h~~~~ 241 (527)
.|++| ++++|+|...+|.+++..|...+
T Consensus 39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 39 CEPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 48999 99999999999999999997654
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=81.51 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=10.6
Q ss_pred ecEEcCCcEECCCCEEee
Q 009720 422 HSIVGERSRLDYGVELKD 439 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~ 439 (527)
++.||+++.|+.+|.|.+
T Consensus 76 ~~~IG~~~~i~~~~~i~~ 93 (188)
T 3srt_A 76 NIHVGENFFANYDCIFLD 93 (188)
T ss_dssp TEEECTTEEECTTEEEEC
T ss_pred CeEECCcccccCceEEec
Confidence 456666666666666654
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-07 Score=90.86 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=17.5
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
|.||.+++|. ++.||+|++||+++++..
T Consensus 223 v~IGaga~Il~gv~IG~~a~IGagsvV~k 251 (287)
T 3mc4_A 223 VLIGAGAKILGNIQVGQCSKIAAGSVVLK 251 (287)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred CEECCCCEECCCcEECCCCEECCCCEEcc
Confidence 5666666654 466666666666666654
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=8.5e-07 Score=83.18 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=25.7
Q ss_pred eeEECCCCEEcc-eeE---eecEEcCCcEECCCCEEeee
Q 009720 406 DAIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~~ 440 (527)
++.||++|+|.. +.| .+..||++|.|+++|.|..+
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 112 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTA 112 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECE
T ss_pred CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcC
Confidence 456666666663 444 45799999999999999754
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.36 E-value=6.6e-07 Score=83.72 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=24.4
Q ss_pred eeEECCCCEEcc-eeE---eecEEcCCcEECCCCEEeee
Q 009720 406 DAIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~~ 440 (527)
++.||++|+|.. +.| ....||++|.|+++|.|...
T Consensus 72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 110 (182)
T 1ocx_A 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTA 110 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECE
T ss_pred CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeC
Confidence 455666666652 444 24689999999999999754
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=82.02 Aligned_cols=13 Identities=54% Similarity=0.649 Sum_probs=4.7
Q ss_pred EcCCCEECCCcEE
Q 009720 478 IDKNVKIGKDVVI 490 (527)
Q Consensus 478 I~~~~~Ig~~~~i 490 (527)
||+++.||.+++|
T Consensus 131 IG~~v~Ig~~a~I 143 (182)
T 1ocx_A 131 IGNNVWIGGRAVI 143 (182)
T ss_dssp ECTTCEECTTCEE
T ss_pred EeCCeEECCCCEE
Confidence 3333333333333
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-06 Score=87.50 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=12.3
Q ss_pred eeEEcCCCEECCCcEEeCCC
Q 009720 475 NCIIDKNVKIGKDVVIVNKD 494 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~ 494 (527)
.++||+||.||++++|....
T Consensus 251 ~~~IGd~V~IGaga~Il~gv 270 (310)
T 3f1x_A 251 HPILEDDVIVYSNATILGRV 270 (310)
T ss_dssp SCEECTTCEECTTCEEESSC
T ss_pred CCEECCCcEEcCCCEECCCc
Confidence 44666666666666666543
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=85.56 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=35.8
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCEE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~I 484 (527)
++.||++|+|+.. .+++||++|+||++|.|...+.+++.. ...++.++.||+||.|. +|.|..+++|
T Consensus 170 ~a~IG~~v~I~hg--~gvvIG~~~~IGd~v~I~~gvtIg~~~----------~~~~~r~~~IGd~v~IGaga~Il~gv~I 237 (287)
T 3mc4_A 170 AARLGSGLFLDHA--TGLVVGETAVVEDNVSILHGVTLGGTG----------KSSGDRHPKIRQGVLIGAGAKILGNIQV 237 (287)
T ss_dssp TCEECSSCEEESC--TTCEECTTCEECSSCEEETTCEEEC---------------CCCSCEECTTCEECTTCEEESSCEE
T ss_pred CCEECCCeEEccC--CCeEECCCeEECCCCEEcCCCEEcCCc----------ccCCCcCCEECCCCEECCCCEECCCcEE
Confidence 4555666666511 135666666666666665544444310 01122234555555543 4444444555
Q ss_pred CCCcEEeCC
Q 009720 485 GKDVVIVNK 493 (527)
Q Consensus 485 g~~~~i~~~ 493 (527)
|++|+|+.+
T Consensus 238 G~~a~IGag 246 (287)
T 3mc4_A 238 GQCSKIAAG 246 (287)
T ss_dssp CTTCEECTT
T ss_pred CCCCEECCC
Confidence 555554443
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-06 Score=83.88 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=24.7
Q ss_pred CCeEE--EEcCceeecCCHHHHHHHHHHcC
Q 009720 214 IENVA--ILCGDHLYRMDYMDFIQSHVDRD 241 (527)
Q Consensus 214 ~e~~L--vl~gD~l~~~dl~~ll~~h~~~~ 241 (527)
.|++| ++++|+|...++.+++.+|...+
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 38999 99999999999999999997654
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=85.96 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=17.2
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
|.||.+++|. ++.||++++||+++++..
T Consensus 196 v~IGaga~Il~gv~IG~~a~IGagsvV~~ 224 (267)
T 1ssq_A 196 VMIGAGAKILGNIEVGKYAKIGANSVVLN 224 (267)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred eEEcCCCEEeCCcEECCCCEECCCCEEcc
Confidence 5666666554 566666666666666654
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.26 E-value=5.3e-06 Score=77.70 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=5.5
Q ss_pred eEEcCCCEECCCcEE
Q 009720 476 CIIDKNVKIGKDVVI 490 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i 490 (527)
+.||+|+.||+++++
T Consensus 149 v~IG~~~vIgagsvV 163 (185)
T 2p2o_A 149 VTIGDNAVIASGAVV 163 (185)
T ss_dssp CEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEE
Confidence 333333333333333
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.22 E-value=4.4e-06 Score=80.32 Aligned_cols=10 Identities=0% Similarity=0.311 Sum_probs=6.9
Q ss_pred eeEECCCCEE
Q 009720 406 DAIISHGCFL 415 (527)
Q Consensus 406 ~s~I~~g~~I 415 (527)
++.||++|+|
T Consensus 35 ~v~IG~~t~i 44 (220)
T 4hur_A 35 NILVGEYSYY 44 (220)
T ss_dssp TEEECTTCEE
T ss_pred CEEECCCeEE
Confidence 5667777776
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-06 Score=87.43 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=7.1
Q ss_pred eEEcCCCEECCCcE
Q 009720 476 CIIDKNVKIGKDVV 489 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~ 489 (527)
++||+++.||.+++
T Consensus 291 VvIGdnv~IGagAv 304 (387)
T 2rij_A 291 ISVGKACLLGANSV 304 (387)
T ss_dssp CEECTTCEECTTCE
T ss_pred eEEeCCCEECCCCc
Confidence 44555555555554
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.2e-06 Score=81.40 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=11.0
Q ss_pred ecEEcCCcEECCCCEEe
Q 009720 422 HSIVGERSRLDYGVELK 438 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~ 438 (527)
+++||++|.|+++|.|.
T Consensus 65 ~v~IG~~~~I~~gv~I~ 81 (219)
T 4e8l_A 65 KLIIGRFCSIGPGTTFI 81 (219)
T ss_dssp CEEECSSCEECTTCEEE
T ss_pred CEEECCCCEEcCCCEEE
Confidence 35667777777776663
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=3.2e-06 Score=80.75 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=10.8
Q ss_pred ecEEcCCcEECCCCEE
Q 009720 422 HSIVGERSRLDYGVEL 437 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I 437 (527)
++.||++|.|+++|.|
T Consensus 58 ~v~IG~~~~I~~~v~i 73 (212)
T 3eev_A 58 KLVIGSFCSIGSGAVF 73 (212)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CcEECCCCEECCCCEE
Confidence 4567777777777765
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.11 E-value=7.3e-06 Score=82.91 Aligned_cols=29 Identities=28% Similarity=0.525 Sum_probs=20.5
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (527)
|.||.|++|. ++.||+|+.||+++++...
T Consensus 230 v~IGaga~Ilggv~IG~~a~IGagsvV~~d 259 (313)
T 3q1x_A 230 VTIGTGAKVLGNIIVGSHVRIGANCWIDRD 259 (313)
T ss_dssp CEECTTCEEESSCEECSSEEECTTCEECSC
T ss_pred CEECCCCEECCCcEECCCCEECCCCEECCC
Confidence 6777777664 5777777777777777543
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=80.17 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=15.6
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
|.||.+++|. ++.||+++.||+|+++..
T Consensus 216 v~IGaga~Ilggv~IG~~a~IGagsvV~~ 244 (289)
T 1t3d_A 216 VMIGAGAKILGNIEVGRGAKIGAGSVVLQ 244 (289)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred eEECCCCEEecCcEECCCCEECCCCEEcc
Confidence 5555555553 455666666666665543
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=4e-06 Score=79.13 Aligned_cols=48 Identities=17% Similarity=0.448 Sum_probs=28.8
Q ss_pred ECCCCEEcc---eeE-eecEEcCCcEECCCCEEeee--EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe
Q 009720 409 ISHGCFLRE---CTV-EHSIVGERSRLDYGVELKDT--VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (527)
Q Consensus 409 I~~g~~I~~---~~i-~~svIg~~~~I~~~~~I~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~ 474 (527)
+++++.|.+ +.+ .++.||+++.|+.+|.|.+. +.+|++ |.||.++.|.
T Consensus 59 ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~------------------~~Ig~~~~I~ 112 (195)
T 3nz2_A 59 LGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGAPITIGDH------------------VLIGPSTQFY 112 (195)
T ss_dssp ECTTCEECSSEEESCSTTEEECTTCEECTTEEEECSSCEEECTT------------------CEECTTCEEE
T ss_pred cCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEecCceEEECCC------------------CEECCCCEEe
Confidence 556666663 111 34677777777777777433 344443 7777777764
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.98 E-value=8.1e-06 Score=77.93 Aligned_cols=37 Identities=3% Similarity=0.053 Sum_probs=22.8
Q ss_pred eeEECCCCEEcc----eeEee--------cEEcCCcEECCCCEEeeeEE
Q 009720 406 DAIISHGCFLRE----CTVEH--------SIVGERSRLDYGVELKDTVM 442 (527)
Q Consensus 406 ~s~I~~g~~I~~----~~i~~--------svIg~~~~I~~~~~I~~~~i 442 (527)
++.||++|+|++ +.+.+ +.++.+++||++|.|...+.
T Consensus 24 ~v~IG~~t~I~~~~~~~~~~~~~~~i~~~~~i~~~v~IG~~~~I~~~v~ 72 (212)
T 3eev_A 24 NIIVGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAV 72 (212)
T ss_dssp TEEECSSCEECCGGGCSCGGGGEETCCSSCSSSCCEEECSSCEECTTCE
T ss_pred CeEECCCeEEccccCccccccceeEECCCccccCCcEECCCCEECCCCE
Confidence 566777777652 11122 23667788888888876653
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.8e-05 Score=75.67 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=14.2
Q ss_pred eecEEcCCcEECCCCEEe
Q 009720 421 EHSIVGERSRLDYGVELK 438 (527)
Q Consensus 421 ~~svIg~~~~I~~~~~I~ 438 (527)
....||++|.|+++|+|.
T Consensus 55 ~~i~IG~~~~Ig~~v~i~ 72 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAFI 72 (212)
T ss_dssp CCEEECSSCEECTTCEEE
T ss_pred cCEEEcCCCEECCCCEEE
Confidence 456888888888888873
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.3e-05 Score=74.84 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=12.0
Q ss_pred ecEEcCCcEECCCCEE
Q 009720 422 HSIVGERSRLDYGVEL 437 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I 437 (527)
+++||++|.|+++++|
T Consensus 60 ~v~IG~~~~Ig~gv~I 75 (209)
T 1mr7_A 60 KLKIGKFCSIGPGVTI 75 (209)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CEEECCCCEEcCCCEE
Confidence 3677888888888776
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=4.8e-05 Score=72.57 Aligned_cols=36 Identities=8% Similarity=0.154 Sum_probs=22.0
Q ss_pred eeEECCCCEEcc---eeEe------ecEEcCCcEECCCCEEeeeE
Q 009720 406 DAIISHGCFLRE---CTVE------HSIVGERSRLDYGVELKDTV 441 (527)
Q Consensus 406 ~s~I~~g~~I~~---~~i~------~svIg~~~~I~~~~~I~~~~ 441 (527)
+..||++|+|++ ..+. ++.|++.+.||++|.|...+
T Consensus 29 ~i~IG~~~~I~~~~~~~i~~~~i~~~~~i~~~v~IG~~~~Ig~gv 73 (209)
T 1mr7_A 29 NVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGV 73 (209)
T ss_dssp TEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTC
T ss_pred CeEECCCcEEcCCCceEEeceEEeeccccCCCEEECCCCEEcCCC
Confidence 456666666653 1222 23456677888888887665
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00081 Score=73.26 Aligned_cols=222 Identities=15% Similarity=0.148 Sum_probs=126.5
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc-CCC-EEEEEeccC-chhHHHHHHHhhccC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-GIN-KIFVLTQFN-SASLNRHIARTYFGN 166 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~-Gi~-~I~Iv~~~~-~~~i~~hl~~~y~~~ 166 (527)
+++..|+||||.||||+ ...||.++|++ |+ +++++.++++.+. |.. ..+|.|.++ .+...+++.+ | +.
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-f-gl 186 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-L-QL 186 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-T-TC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-h-CC
Confidence 58999999999999986 46899999997 88 9999999998864 532 567777664 5677788865 4 32
Q ss_pred Cc----ccCCCeEEEeccccC---CCCCC-CCc-ccChHHHHHHHHH--------------------HHHhhhcCCCCeE
Q 009720 167 GT----NFGDGFVEVLAATQT---PGESG-KNW-FQGTADAVRQFTW--------------------VFEDAKNRNIENV 217 (527)
Q Consensus 167 ~~----~~~~~~V~vl~~~q~---~~~~~-~~~-~~Gta~al~~a~~--------------------~l~~~~~~~~e~~ 217 (527)
.. -|.++.+..+..... ..+.. -.| +-|.++....... .++++...+.+.+
T Consensus 187 ~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi 266 (630)
T 3ogz_A 187 EVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESI 266 (630)
T ss_dssp CCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEE
T ss_pred CcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEE
Confidence 11 111222322221100 00000 112 2577765443332 5666666788999
Q ss_pred EEEcCceee-cCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEE-EE-CCCCce-E-EEEecCCcccccccccccccc
Q 009720 218 AILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLV-KI-DNMGRI-A-QFAEKPSGANLKAMQVDTSLL 292 (527)
Q Consensus 218 Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v-~~-D~~g~V-~-~~~EKp~~~~~~~~~v~~~~~ 292 (527)
.+.+.|++. ..---.|+-.+.++++++.+-+.+... ...-|.+ .+ ..+|+. . .+.|-...+...+-..+. -
T Consensus 267 ~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~--~ 342 (630)
T 3ogz_A 267 VFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKD--G 342 (630)
T ss_dssp EEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC------
T ss_pred EEEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCC--C
Confidence 999999943 333344778888899999887776432 2334544 33 345655 2 334422111000000000 0
Q ss_pred CCCcc-ccccCCceeeeeEEEEeHHHHHHHHHh
Q 009720 293 GFSPQ-EARKCPYVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 293 ~~~~~-~~~~~~~l~~~GIYif~~~iL~~ll~~ 324 (527)
|-... ......+..|+..+.|+-+.+.+.++.
T Consensus 343 g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 343 GDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp --------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred ccccccccccccccccceeeeEEHHHHHHHHHh
Confidence 00000 000123456899999999866656654
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.63 E-value=6.6e-05 Score=72.14 Aligned_cols=38 Identities=5% Similarity=0.182 Sum_probs=24.8
Q ss_pred eeEECCCCEEcc---eeEe------ecEEcCCcEECCCCEEeeeEEe
Q 009720 406 DAIISHGCFLRE---CTVE------HSIVGERSRLDYGVELKDTVML 443 (527)
Q Consensus 406 ~s~I~~g~~I~~---~~i~------~svIg~~~~I~~~~~I~~~~i~ 443 (527)
+..||++++|++ +.+. ++.||++++||++|.|...+.+
T Consensus 34 ~i~IG~~t~i~~~~~~~~~~~vi~~~~~i~~~v~IG~~~~I~~gv~I 80 (219)
T 4e8l_A 34 NILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTF 80 (219)
T ss_dssp SEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEE
T ss_pred CEEECCccEEcCCcCceecceEEeecceeCCCEEECCCCEEcCCCEE
Confidence 567777777764 1222 2345777888888888766554
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00048 Score=65.79 Aligned_cols=38 Identities=0% Similarity=0.007 Sum_probs=26.5
Q ss_pred eeEECCCCEEcc----eeEeecEE--------cCCcEECCCCEEeeeEEe
Q 009720 406 DAIISHGCFLRE----CTVEHSIV--------GERSRLDYGVELKDTVML 443 (527)
Q Consensus 406 ~s~I~~g~~I~~----~~i~~svI--------g~~~~I~~~~~I~~~~i~ 443 (527)
+..||++|+|.+ +.+.++++ ...++||++|.|...+.+
T Consensus 22 ~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 22 NIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAF 71 (212)
T ss_dssp TEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEE
T ss_pred CEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEE
Confidence 566777777763 33334554 478999999999877653
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.004 Score=58.80 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=70.8
Q ss_pred CceEEEEEe--CCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEE-EEEeccCchhHHHHHHHhhccCCcc
Q 009720 93 KNVAAIILG--GGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTN 169 (527)
Q Consensus 93 ~~m~aVILA--aG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I-~Iv~~~~~~~i~~hl~~~y~~~~~~ 169 (527)
+.|.+||++ |..-|||.|. ..+......++ |||+|+++.+..++++++ ++++++.. + +.+
T Consensus 2 ~~~~~vip~k~g~~KtRL~~~---l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~--~-----~~~------ 64 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSPV---LSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYG--L-----EEM------ 64 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTTT---SCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTT--C-----SSC------
T ss_pred CceEEEEEeCCCCCccccCcc---CCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHH--H-----Hhh------
Confidence 458899999 7788888631 12222225578 999999999999999999 89887642 1 111
Q ss_pred cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHH
Q 009720 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQ 235 (527)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~ 235 (527)
++ ++++... .|.+++++.+...+ .+.++++.||+-+ ...+..+++
T Consensus 65 ~~---~~~v~~~-----------~gl~~sl~~a~~~~-------~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 65 TE---ARVLLDE-----------KDLNEALNRYLKEA-------EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp CS---SEEEECC-----------SCHHHHHHHHHHHC-------CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred cC---CEEEECC-----------CCHHHHHHHHHHhc-------CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 12 3444322 28899998886544 2689999999833 344566655
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=83.77 E-value=8.2 Score=35.51 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=64.5
Q ss_pred eeeCCcchhHHHHHHHHHHcCCC--EEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHH
Q 009720 120 VPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (527)
Q Consensus 120 lpIgGk~pLId~~l~~l~~~Gi~--~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~ 197 (527)
+|.-|....|..+|+.+.+.-.. +|+||-....+.-.+.+ +.|... + ..+.++.. +. .|.+.
T Consensus 11 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~-~~~~~~---~--~~i~~i~~-~n---------~G~~~ 74 (240)
T 3bcv_A 11 VPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKIC-DDYAAQ---Y--PNIKVIHK-KN---------AGLGM 74 (240)
T ss_dssp EEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHH-HHHHHH---C--SSEEEEEC-CC---------CCHHH
T ss_pred EecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHH-HHHHhh---C--CCEEEEEC-CC---------CChHH
Confidence 44445446788888888765432 56666544333322333 233111 1 12666642 21 48888
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEE
Q 009720 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (527)
Q Consensus 198 al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (527)
+...++... ..+.++++.+|.+...+ +..+++...+.+.++.+.
T Consensus 75 a~N~g~~~a------~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 75 ACNSGLDVA------TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp HHHHHHHHC------CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHc------CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 888776554 35899999999988777 577887776666776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 527 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 4e-67 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 2e-32 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 5e-30 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 3e-25 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 2e-23 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 2e-18 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 1e-17 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 2e-07 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 1e-06 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 6e-05 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 217 bits (552), Expect = 4e-67
Identities = 165/308 (53%), Positives = 217/308 (70%), Gaps = 9/308 (2%)
Query: 90 VDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFV 146
+DP ++V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+V
Sbjct: 4 LDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 63
Query: 147 LTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206
LTQFNSASLNRH++R Y N + + + A Q E+ +WFQGTADAVRQ+ W+F
Sbjct: 64 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP-DWFQGTADAVRQYLWLF 122
Query: 207 EDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN 266
+ + IL GDHLYRMDY FIQ+H + DADIT++ + E RA+ +GL+KID
Sbjct: 123 ---EEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE 179
Query: 267 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326
GRI +FAEKP G L+AM+VDT++LG + A++ P++ASMG+YV KDV+ LLR ++
Sbjct: 180 EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKF 239
Query: 327 PTSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK-ESPAFHFYDPK 384
P +NDFGSE+IP A VQAY++ YWEDIGTI++FY AN+ +TK P F FYD
Sbjct: 240 PGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRS 299
Query: 385 TPFYTSPR 392
P YT PR
Sbjct: 300 APIYTQPR 307
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 118 bits (297), Expect = 2e-32
Identities = 59/135 (43%), Positives = 97/135 (71%)
Query: 393 FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTES 452
+LPP+K+ + + D++I GC ++ C + HS+VG RS + G ++D++++GADYY+T++
Sbjct: 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 60
Query: 453 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI 512
+ L A+G VPIG+G+N I+ IIDKN +IG +V I+NKD+VQEA R G++I+SGI
Sbjct: 61 DRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 120
Query: 513 TIIMEKATIEDGMVI 527
+++ A I G++I
Sbjct: 121 VTVIKDALIPSGIII 135
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 117 bits (294), Expect = 5e-30
Identities = 60/277 (21%), Positives = 100/277 (36%), Gaps = 48/277 (17%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P TL + +PV +I P+S + +GI +I +++
Sbjct: 4 GIILAGGSGTRLHPATLAISKQLLPVYD-KPMIYYPLSTLMLAGIREILIISTPQDTPRF 62
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G+G+N+G +++ A Q G A A N +
Sbjct: 63 QQ----LLGDGSNWG---LDLQYAVQ-------PSPDGLAQAFLIGES-----FIGNDLS 103
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+L + Y D+ + + S R ++ V YG+V+ D G+ EK
Sbjct: 104 ALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV--LDPERYGVVEFDQGGKAISLEEK 161
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--NDFGS 334
P K Y A G+Y + + V + R P+ +
Sbjct: 162 PLEP--------------------KSNY-AVTGLYFYDQQV-VDIARDLKPSPRGELEIT 199
Query: 335 EIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANM 369
++ A + + I W D GT S EA
Sbjct: 200 DVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ 236
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 103 bits (257), Expect = 3e-25
Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 56/285 (19%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++ I+L GG+GT+L+P+T + +P+ +I P+S + +GI I +++
Sbjct: 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYD-KPMIYYPLSVLMLAGIRDILIISTPRD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN- 211
L R G+G+ FG F + + +G ADA K+
Sbjct: 61 LPLYRD----LLGDGSQFGVRFSYRV----------QEEPRGIADAFIV-------GKDF 99
Query: 212 -RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
+ + +L + Y + + ++ + I V +G+V+ D+ GR+
Sbjct: 100 IGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV--RDPRPFGVVEFDSEGRV 157
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330
EK K Y G+Y + V+ R +
Sbjct: 158 ISIEEK--------------------PSRPKSNY-VVPGLYFYDNQVVEIARRIE---PS 193
Query: 331 DFGSEIIPAAIMEH------DVQAYIFRDYWEDIGTIKSFYEANM 369
D G I + E+ V+ W D GT EA+
Sbjct: 194 DRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS 238
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 97.9 bits (244), Expect = 2e-23
Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 52/278 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P+T + +P+ +I P+S + +GI +I ++T
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIYD-KPMIYYPLSVLMLAGIREILIITTPEDKGYF 62
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN--RNI 214
+ G+G+ FG +++ A Q + G A A +
Sbjct: 63 QR----LLGDGSEFG---IQLEYAEQPSPD-------GLAQAFII-------GETFLNGE 101
Query: 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
+ +L + + + ++ R T+ V +G+V+ D+ R
Sbjct: 102 PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFDDNFRAISLE 159
Query: 275 EKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN--DF 332
EK + K + A G+Y + V + + P+
Sbjct: 160 EK--------------------PKQPKSNW-AVTGLYFYDSKV-VEYAKQVKPSERGELE 197
Query: 333 GSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEAN 368
+ I + ++ + W D GT S EA+
Sbjct: 198 ITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 83.2 bits (204), Expect = 2e-18
Identities = 33/273 (12%), Positives = 73/273 (26%), Gaps = 33/273 (12%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG GT+L T+ P V + G ++ M GI + + +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG-KPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ A + + E T D+ + A+ +
Sbjct: 64 EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDE 123
Query: 217 VAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+ +D I H T++ +G + I + +
Sbjct: 124 AFLFTYGDGVADLDIKATIDFHKAHGKKATLTA----TFPPGRFGALDIQAGQVRSFQEK 179
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
+ + G +V V+ + + E
Sbjct: 180 PK-----------------------GDGAMINGGFFVLNPSVIDLIDNDAT----TWEQE 212
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368
+ + ++ A+ +W+ + T++
Sbjct: 213 PLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLE 245
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 82.7 bits (204), Expect = 1e-17
Identities = 22/206 (10%), Positives = 59/206 (28%), Gaps = 24/206 (11%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCI------NSGINKIFV 146
+ + L GG GT + + V +D+ + + + +
Sbjct: 73 DKLVVLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLM 129
Query: 147 LTQFNSASLNRHIARTYFGNGT-----------NFGDGFVEVLAATQTPGESGKNWFQGT 195
+ ++ + + N D FV + +T E + G
Sbjct: 130 NSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGW--YPPGH 187
Query: 196 ADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
D + ++ E V + D+L + + ++ + + +
Sbjct: 188 GDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTL 247
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSG 279
+ L+ + ++ + A+ P
Sbjct: 248 ADVKGGTLISYEGKVQLLEIAQVPDE 273
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 31/279 (11%), Positives = 69/279 (24%), Gaps = 66/279 (23%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL G GT+L PLT V V LI+ + GIN I ++ + +
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 64
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ A + K +
Sbjct: 65 YLKEKYGV-------------------------RLVFNDKYADYNNFYSLYLVKEELANS 99
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
I ++L++ + + + + + + ++
Sbjct: 100 YVIDADNYLFKNMFRNDLTRSTYFSVYREDCT---------NEWFLVYGDDYKVQDIIVD 150
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW------RYPTSN 330
GV + K++ + +
Sbjct: 151 SKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 186
Query: 331 DFGSEIIPAAIMEHDVQAY-IFRDYWEDIGTIKSFYEAN 368
+ ++ I E DV + + +I +++ + +
Sbjct: 187 LYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 41/267 (15%), Positives = 75/267 (28%), Gaps = 50/267 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL G GT++ VAG +++ + K + + +
Sbjct: 4 AIILAAGKGTRMKSDL---PKVLHKVAGIS-MLEHVFRSVGAIQPEKTVTVVGHKAELVE 59
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+A ++ GT AV + E
Sbjct: 60 EVLAGQTEFV---------------------TQSEQLGTGHAVMMTEPILEG--LSGHTL 96
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
V + + I H++ TI A YG + ++ + + E+
Sbjct: 97 VIAGDTPLITGESLKNLIDFHINHKNVATILTAET--DNPFGYGRIVRNDNAEVLRIVEQ 154
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF---KLLRWRYPTSNDFG 333
+ K + G YVF + LF K + +
Sbjct: 155 K-----------------DATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYI 197
Query: 334 SEIIPAAIME-HDVQAYIFRDYWEDIG 359
+++I V AY +D+ E +G
Sbjct: 198 TDVIGIFRETGEKVGAYTLKDFDESLG 224
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 42.7 bits (99), Expect = 6e-05
Identities = 32/279 (11%), Positives = 77/279 (27%), Gaps = 22/279 (7%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATP--AVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQF 150
A+++ GG G +L+PL+ R P +P+ L++ + + + +
Sbjct: 2 KTYALVMAGGRGERLWPLS-REDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 151 NSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAK 210
+ ++ R A G + +V +D
Sbjct: 61 DQEAVARPYADGIRLLLEPLGRDTAGA---VLLGVAEALKEGAERLLVLPADHYVGDDEA 117
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
R + + + + I + R + V+ +
Sbjct: 118 YREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGF--VEKPSYAEA 175
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKK-DVLFKLLRWRYPTS 329
++ K N + + + + A + + ++ L
Sbjct: 176 LEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLP------ 229
Query: 330 NDFGSEIIPAAIMEH--DVQAYIFRDYWEDIGTIKSFYE 366
I +ME V+ + R W+D+G ++
Sbjct: 230 ----KISIDYGVMEKAERVRVVLGRFPWDDVGNWRALER 264
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 527 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.97 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.97 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.96 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.94 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.91 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.89 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.66 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.58 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.57 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.56 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.42 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.4 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.39 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.34 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.3 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.25 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.19 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.16 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.12 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.1 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.01 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.96 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 98.96 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.92 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.91 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.91 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.91 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 98.9 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.89 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.88 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.84 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.8 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.71 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.68 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.66 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.65 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.64 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.53 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.5 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.47 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.37 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.34 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.33 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.25 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.22 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.04 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 97.93 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.9 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.89 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.89 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.83 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 97.77 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.07 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=2.8e-45 Score=369.18 Aligned_cols=297 Identities=58% Similarity=1.036 Sum_probs=246.7
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
..+.|.|||||||.||||+|||..+||||+||+|++|||+|+|++|.++||++|+|++++..+++.+|+.+.|..+-...
T Consensus 8 ~~~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~ 87 (307)
T d1yp2a2 8 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 87 (307)
T ss_dssp HHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC------
T ss_pred cCCceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccc
Confidence 35669999999999999999999999999999886699999999999999999999999999999999987763221111
Q ss_pred C-CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 171 G-DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 171 ~-~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
. .+...++...+.. ....|+.|++++++.+++++++ ...++|++++||++++.|+.++++.|+.++++.++.+.
T Consensus 88 ~~~~~~~~~~~~~~~--~~~~~~~g~~~ai~~~~~~i~~---~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~ 162 (307)
T d1yp2a2 88 KNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAAL 162 (307)
T ss_dssp --CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEE
T ss_pred cccccceeeceeeec--cccccccchhHHHHHhHHhhhc---cccceEEEecCcceeccchhhhhhhhhhccccceEEEE
Confidence 1 1233444444433 2346778999999999999974 34578999999999999999999999999999999888
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
.+..++.+.||++.+|++|+|..|.|||.......+.++...+++........+.+.++|+|+|++++|..+++...+..
T Consensus 163 ~~~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~ 242 (307)
T d1yp2a2 163 PMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGA 242 (307)
T ss_dssp EECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTC
T ss_pred ecccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccc
Confidence 87776677899999999999999999999877777777777888877666667889999999999999988888877777
Q ss_pred CchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccC-CCCccCCCCCCCCCCCc
Q 009720 330 NDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPR 392 (527)
Q Consensus 330 ~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~-~~~~~~~~~~~i~~~~~ 392 (527)
.++..++++.++++ .+|++|.++|||.|||||++|++||+++++.. +.+.||+++++|||.++
T Consensus 243 ~~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~~ 307 (307)
T d1yp2a2 243 NDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPR 307 (307)
T ss_dssp CCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCC
T ss_pred cchHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCCC
Confidence 78889999998877 68999999999999999999999999999877 56689999999999864
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=3.7e-40 Score=330.88 Aligned_cols=234 Identities=25% Similarity=0.380 Sum_probs=196.2
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCc-hhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~~~ 172 (527)
+++|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++.. +.+. .|++++..++
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~-----~~~~~~~~~g- 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQ-----QLLGDGSNWG- 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHH-----HHHTTSGGGT-
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHHH-----HHhccccccC-
Confidence 46899999999999999999999999999999 99999999999999999998887654 4443 3445555565
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+++....|. |+.|||+|+..+.++++ +.+.|+++++|++++.|+.+++++|.+++++++|++.+++
T Consensus 74 --~~I~y~~q~-------~~~Gta~ai~~a~~~i~-----~~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~ 139 (292)
T d1fxoa_ 74 --LDLQYAVQP-------SPDGLAQAFLIGESFIG-----NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL 139 (292)
T ss_dssp --CEEEEEECS-------SCCCGGGHHHHTHHHHT-----TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS
T ss_pred --eEEEEccCC-------CCCcHHHHHHhhhhhcC-----CCceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECC
Confidence 344333343 35799999999999996 2456788888999999999999999999999999999997
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC--C
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--N 330 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~--~ 330 (527)
+ +++||++++|++|+++.|.|||+.+ .|+++++|+|+|+++++. +++...++. +
T Consensus 140 ~--p~~yGV~~~d~~~ki~~~~EKP~~p---------------------~Snla~~G~Y~f~~~~~~-~~~~l~~s~rgE 195 (292)
T d1fxoa_ 140 D--PERYGVVEFDQGGKAISLEEKPLEP---------------------KSNYAVTGLYFYDQQVVD-IARDLKPSPRGE 195 (292)
T ss_dssp C--GGGSEEEEECTTSCEEEEEESCSSC---------------------SSSEEEEEEEEECTTHHH-HHHHCCCCTTSS
T ss_pred C--HHHCeEEEEcCCCCEeEEEECCCCC---------------------CCCcEEEEEEEEChHHHH-HHHhCCCCCCCc
Confidence 7 5689999999999999999999855 368999999999999986 566666543 3
Q ss_pred chhhhhHHhhhhcCceEEEEec-c-eEEecCCHHHHHHHHHHhh
Q 009720 331 DFGSEIIPAAIMEHDVQAYIFR-D-YWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~~~~-g-~w~dIgt~~d~~~An~~ll 372 (527)
...+|+++.+++++++.++.+. + +|.|+||+++|++|+..+.
T Consensus 196 ~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 196 LEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp CCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 4568999999999988888774 4 5999999999999997664
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-38 Score=318.75 Aligned_cols=233 Identities=22% Similarity=0.346 Sum_probs=193.6
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++||++|+|++++....+. +.+++++.+|+
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~----~~~~~~g~~~g--- 73 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYF----QRLLGDGSEFG--- 73 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHH----HHHHTTSGGGT---
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHH----HHHhCchHhhC---
Confidence 7999999999999999999999999999999 999999999999999999999998765543 34456666776
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
+.+.+..|.. +.|||+||..+.+++++ .+.+|++++|+++..++.+++++|.+.+.++||++.++++
T Consensus 74 i~I~y~~Q~~-------plGta~Ai~~a~~fi~~-----~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~d- 140 (291)
T d1mc3a_ 74 IQLEYAEQPS-------PDGLAQAFIIGETFLNG-----EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD- 140 (291)
T ss_dssp CEEEEEECSS-------CCCSTHHHHHTHHHHTT-----SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC-
T ss_pred cEEEEEECCC-------CCchHHHHHHHHHHhCC-----CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCC-
Confidence 3443334432 36999999999999962 3446667777888999999999999988899999999987
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC-Cc-h
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS-ND-F 332 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~-~d-~ 332 (527)
+++||++.+|++|+|++|.|||+.+. ++++++|+|+|+++++. .+++..++. .+ .
T Consensus 141 -P~~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~-~~~~lk~s~rgE~E 197 (291)
T d1mc3a_ 141 -PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGELE 197 (291)
T ss_dssp -CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSSCC
T ss_pred -cccCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHH-HHhcCCCCCCCcee
Confidence 67899999999999999999998653 58999999999999996 556655543 22 3
Q ss_pred hhhhHHhhhhcCceEEEEec-c-eEEecCCHHHHHHHHHHh
Q 009720 333 GSEIIPAAIMEHDVQAYIFR-D-YWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 333 ~~dii~~li~~~~V~~~~~~-g-~w~dIgt~~d~~~An~~l 371 (527)
.+|+++.++++.+...+.+. + +|.|+||+++|.+|+..+
T Consensus 198 Itdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 198 ITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp HHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred ehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 47889999998887777664 4 599999999999999755
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=8.3e-34 Score=285.37 Aligned_cols=236 Identities=22% Similarity=0.350 Sum_probs=189.1
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
+.|+|||||||.||||+|+|...||||+||+|+ |||+|++++|..+|+++|+|++++....+.+++ +.+...++
T Consensus 2 ~~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~----~~~~~~~~- 75 (295)
T d1lvwa_ 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDL----LGDGSQFG- 75 (295)
T ss_dssp CSCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHH----HTTSGGGT-
T ss_pred CCcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHH----hccchhcC-
Confidence 578999999999999999999999999999999 999999999999999999999998775554333 23333333
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
..++++...+ +.|||+||..+..++++ .+.++++++|+++..++..+++.|.+.+.++|+++.+++
T Consensus 76 ~~i~~v~e~~---------~~gta~Al~~a~~~l~~-----~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~ 141 (295)
T d1lvwa_ 76 VRFSYRVQEE---------PRGIADAFIVGKDFIGD-----SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR 141 (295)
T ss_dssp SEEEEEECSS---------CCCGGGHHHHTHHHHTT-----SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS
T ss_pred CEEEEEECCC---------CCCHHHHHHHHHHHcCC-----CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcC
Confidence 1344444222 36999999999999862 356788888889999999999999999999999999887
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC--CC
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~ 330 (527)
+ +++||++.++++++|..|.|||..+. +.++++|+|+|++++|. +++...+. ..
T Consensus 142 ~--~~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~-~~~~~~~~~~~e 197 (295)
T d1lvwa_ 142 D--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDRGE 197 (295)
T ss_dssp C--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTTSC
T ss_pred C--CccccEEEECCCCcEEEEeecccCcc---------------------cceeecceEEECHHHHH-HHHhcCCCcCCC
Confidence 7 56799999999999999999997532 46899999999999985 44544332 22
Q ss_pred chhhhhHHhhhhcCce--EEEEecceEEecCCHHHHHHHHHHhh
Q 009720 331 DFGSEIIPAAIMEHDV--QAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 331 d~~~dii~~li~~~~V--~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
.+..++++.++..... +.+..+.+|.|+||+++|.+|+..+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~ 241 (295)
T d1lvwa_ 198 LEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp CCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred eeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence 3456788888877654 44445678999999999999987763
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=5.4e-31 Score=255.81 Aligned_cols=240 Identities=18% Similarity=0.281 Sum_probs=178.4
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCccc---
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF--- 170 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~--- 170 (527)
++|||||||.||||+|+|...||||+||+|+ |||+|+|++|.++|+++|+|+++|.++++.+|+...+ +.....+
T Consensus 3 ~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~~ 81 (259)
T d1tzfa_ 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA 81 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGG
T ss_pred ceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchhc
Confidence 5899999999999999999999999999999 9999999999999999999999999999999987544 2211110
Q ss_pred -----------CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHH
Q 009720 171 -----------GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239 (527)
Q Consensus 171 -----------~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~ 239 (527)
....+.++.... ..++.+++..+.+.+. ..++|+++++|.+++.++..+++.|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~ 147 (259)
T d1tzfa_ 82 ENRMEVHHKRVEPWNVTLVDTGD---------SSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHKA 147 (259)
T ss_dssp GTEEEETTCCCCCCEEEEEECCS---------SCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHHH
T ss_pred cccchhhhccccccceeEEeccc---------cccccchhhhhhhhcc-----CCCceEEeccccccccchhhhhhhhcc
Confidence 012233333222 2588999988766553 357899999999999999999999998
Q ss_pred cCCcEEEEEEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHH
Q 009720 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (527)
Q Consensus 240 ~~ad~tv~~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~ 319 (527)
.+...+...... .++++.+... ..++..+.+++... +++.++|+|+++++++.
T Consensus 148 ~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~----------------------~~~~~~G~y~~~~~~~~ 200 (259)
T d1tzfa_ 148 HGKKATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID 200 (259)
T ss_dssp HCCSEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG
T ss_pred cccceeeccccc----cccCCceecc-cceEEeeeeccccc----------------------eeeecceeccccchhhh
Confidence 888777665532 3456655553 45677666655432 36789999999999775
Q ss_pred HHHHhhCCCCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCcc
Q 009720 320 KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHF 380 (527)
Q Consensus 320 ~ll~~~~~~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~ 380 (527)
.+ + .....+..++++.+++++++++|.++|||.||||++||..+|..+....+.+.+
T Consensus 201 ~i-~---~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~~~~~~ 257 (259)
T d1tzfa_ 201 LI-D---NDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAPWKT 257 (259)
T ss_dssp GC-C---STTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTCCTTCC
T ss_pred hc-c---cCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcCCCCCCC
Confidence 22 2 234456788999999999999999999999999999999999998876544443
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=2.3e-30 Score=256.76 Aligned_cols=233 Identities=20% Similarity=0.330 Sum_probs=166.5
Q ss_pred eEEEEEeCCCCCccccC-ccCCCccceee-CCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 95 VAAIILGGGAGTKLFPL-TLRAATPAVPV-AGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 95 m~aVILAaG~GtRL~PL-T~~~PKpLlpI-gGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
+.|||||||.||||+|| |+.+||||+|| +|+ |||+|+++++.+. ++++++|++++..+.+.++ ++.+
T Consensus 3 i~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k-~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~-----~~~~---- 72 (268)
T d2cu2a2 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARP-----YADG---- 72 (268)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGG-----GCSS----
T ss_pred ceEEEecCCCcccCCCcccCCCCceeeecCCCC-CHHHHHHHHhhCcCCccchhhhhhHHHHHHhhh-----hccc----
Confidence 45999999999999999 67899999997 567 9999999999874 7789999999877655432 2221
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH--HHHHHHH---HHcCCcEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY--MDFIQSH---VDRDADITI 246 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl--~~ll~~h---~~~~ad~tv 246 (527)
+.++...+. +||+.++..+...+.. ...+.|+|++||+++..++ ...+..+ .+.+..+++
T Consensus 73 ---~~ii~E~~~---------~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 137 (268)
T d2cu2a2 73 ---IRLLLEPLG---------RDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVAL 137 (268)
T ss_dssp ---SEEEEESSC---------CHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ---cceeeeeec---------CCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEee
Confidence 233332222 5999999988766542 2468999999999998775 3344432 244555566
Q ss_pred EEEEcCCCCCCCceEEEECCCC----ceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHH
Q 009720 247 SCAAVGESRASDYGLVKIDNMG----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLL 322 (527)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~D~~g----~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll 322 (527)
...+... ++.||++..++++ +|..|.|||.....+.+. ...+++|+|+|+|++++|...+
T Consensus 138 ~~~~~~~--~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~--------------~~~~~~N~Giy~f~~~~l~~~~ 201 (268)
T d2cu2a2 138 GLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI--------------RKGYVWNGGVFAFAPATMAELF 201 (268)
T ss_dssp EECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH--------------HTTCEEEEEEEEECHHHHHHHH
T ss_pred ecccccc--ccccceEEeccccccchhhheeecccchhhhhhhh--------------ccCcccchhhhhcchHHHHHHH
Confidence 5555444 5789999987653 799999999865432211 1247899999999999887766
Q ss_pred HhhCCCC---------CchhhhhHHh---------hhh-cCceEEEEecceEEecCCHHHHHHHH
Q 009720 323 RWRYPTS---------NDFGSEIIPA---------AIM-EHDVQAYIFRDYWEDIGTIKSFYEAN 368 (527)
Q Consensus 323 ~~~~~~~---------~d~~~dii~~---------li~-~~~V~~~~~~g~w~dIgt~~d~~~An 368 (527)
++..+.. .....+.++. .++ ..++.++.++++|.|+||++++.+..
T Consensus 202 ~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 202 RRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 6655421 1112233332 122 36899999999999999999999764
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.96 E-value=6.5e-29 Score=237.69 Aligned_cols=219 Identities=16% Similarity=0.201 Sum_probs=163.3
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+|+|||||||.||||+|+|...||||+||+|+ |||+|+++.+.++|+++|+|+++|.++++ +|+.+.| +
T Consensus 3 ~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i-~~~~~~~-------~-- 71 (229)
T d1jyka_ 3 RVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQF-DYLKEKY-------G-- 71 (229)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGG-THHHHHH-------C--
T ss_pred ceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhh-hhhhhhc-------c--
Confidence 57899999999999999999999999999999 99999999999999999999999998887 5555444 2
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
++++...+.. ..||+++|+.+.++++ ++|+++++|.+++..+.+.+ ....+....+.+
T Consensus 72 -i~i~~~~~~~-------~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~~~ 129 (229)
T d1jyka_ 72 -VRLVFNDKYA-------DYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRNDL-------TRSTYFSVYRED 129 (229)
T ss_dssp -CEEEECTTTT-------TSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCSCC-------CSEEEEECEESS
T ss_pred -cccccccccc-------ccccccccccchhhhc-------ccccccccccccccchhhhh-------hccccceeeeee
Confidence 3444433322 2599999999876664 56777777767655443221 122333333333
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHH---HHhhCCC--
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL---LRWRYPT-- 328 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~l---l~~~~~~-- 328 (527)
..+++.+..+++++|..+.++|.. ..+.+|+|+|++..+..+ +++....
T Consensus 130 --~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~ 183 (229)
T d1jyka_ 130 --CTNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVSGE 183 (229)
T ss_dssp --CSSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTTTC
T ss_pred --ccccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhcccc
Confidence 456888889999999999998763 346789999998765433 3332221
Q ss_pred -CCchhhhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHHh
Q 009720 329 -SNDFGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMAL 371 (527)
Q Consensus 329 -~~d~~~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~l 371 (527)
...+..+++...+++.+++.+.+.+. |.+|||++||.+|+..+
T Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 184 FVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp CTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 22344567788888899999998874 99999999999998654
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.94 E-value=6.4e-26 Score=218.23 Aligned_cols=231 Identities=19% Similarity=0.250 Sum_probs=177.2
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeE
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V 175 (527)
.|||||||.||||+| .+||||+||+|+ |||+|+++.|.++|+++|+|++++..+.+..+.. .. +
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~-----~~-------~ 66 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLA-----GQ-------T 66 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTT-----TT-------S
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhcc-----cc-------c
Confidence 599999999999998 479999999999 9999999999999999999999998765543321 11 1
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
.+..... +.||.+++..+...+.. ...+.+++..+|.++ ..++.++++.|.+.+..+++...+...
T Consensus 67 ~~~~~~~---------~~g~~~~~~~a~~~l~~---~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~- 133 (250)
T d1g97a2 67 EFVTQSE---------QLGTGHAVMMTEPILEG---LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN- 133 (250)
T ss_dssp EEEECSS---------CCCHHHHHHTTHHHHTT---CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC-
T ss_pred ccccccc---------ccccchHHHHHHHhhhc---ccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc-
Confidence 1111111 14999999999888863 233455555556554 566899999999999999988888766
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---CCCc
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~---~~~d 331 (527)
...|+.+..++++.+..+.+++..... ...+++.++|+|.|+...|.+.++.... ....
T Consensus 134 -~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~ 195 (250)
T d1g97a2 134 -PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQGEY 195 (250)
T ss_dssp -CTTSCEEEECTTCCEEEEECGGGCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSC
T ss_pred -cCCCceEEEeeceEEEEeecccccccc-----------------ccccceeeeeeeecchHHHHHHHHHhccCcchhhH
Confidence 456888888899999999988754321 1134678999999999988777665332 2344
Q ss_pred hhhhhHHhhhhc-CceEEEEecceEEe--cCCHHHHHHHHHHhhc
Q 009720 332 FGSEIIPAAIME-HDVQAYIFRDYWED--IGTIKSFYEANMALTK 373 (527)
Q Consensus 332 ~~~dii~~li~~-~~V~~~~~~g~w~d--Igt~~d~~~An~~ll~ 373 (527)
+..++++.++++ .+|.++.++++|.+ |+|++||..|+..+.+
T Consensus 196 ~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~ 240 (250)
T d1g97a2 196 YITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRR 240 (250)
T ss_dssp CGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHH
Confidence 677888888876 68999999999976 7799999999877654
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1e-23 Score=203.19 Aligned_cols=232 Identities=15% Similarity=0.198 Sum_probs=159.8
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
+.|++||||||.||||+| .+||||+||+|+ |||+|+|+.+.+.|+++|+|++++..+.+..+. .+.
T Consensus 1 ~~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~-----~~~----- 66 (248)
T d2oi6a2 1 NAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQAL-----KDD----- 66 (248)
T ss_dssp CCEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-----CCT-----
T ss_pred CCceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeec-----ccc-----
Confidence 469999999999999998 589999999999 999999999999999999999999877664432 111
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
....+.... +.||++++.++...+. ...+++++.+|..+..........+.......++...+..
T Consensus 67 ~~~~~~~~~----------~~g~~~~~~~~~~~i~-----~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
T d2oi6a2 67 NLNWVLQAE----------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLD 131 (248)
T ss_dssp TEEEEECSS----------CCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECS
T ss_pred ccccccccc----------CcccHHHHHhhhhhhc-----cccceeeecCccccccchhHHHHHHHhhccccceeEEEec
Confidence 112222211 2599999999887764 3467888888887643221111112233444555555555
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---C
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---~ 329 (527)
+ +..++.+..+ ++....+.+++..... ........+|.|.|+.+.|.+.+...... .
T Consensus 132 ~--~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 191 (248)
T d2oi6a2 132 D--PTGYGRITRE-NGKVTGIVEHKDATDE-----------------QRQIQEINTGILIANGADMKRWLAKLTNNNAQG 191 (248)
T ss_dssp C--CTTSCEEEEE-TTEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTC
T ss_pred C--Cccccccccc-cCccceeeeccCCChh-----------------hhhhhhhhhhhhccchHHHHHHHHHhhccccch
Confidence 5 4557776664 4555555543322110 11245788999999999887776554332 2
Q ss_pred CchhhhhHHhhhhc-CceEEEEecceEE--ecCCHHHHHHHHHHhhc
Q 009720 330 NDFGSEIIPAAIME-HDVQAYIFRDYWE--DIGTIKSFYEANMALTK 373 (527)
Q Consensus 330 ~d~~~dii~~li~~-~~V~~~~~~g~w~--dIgt~~d~~~An~~ll~ 373 (527)
..+.+++++.++++ .+|.++..+++|. .|+||+||..|+..+.+
T Consensus 192 e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~ 238 (248)
T d2oi6a2 192 EYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQS 238 (248)
T ss_dssp SCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence 23467888888877 6899999888885 48899999999876643
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.89 E-value=8.5e-23 Score=181.15 Aligned_cols=135 Identities=44% Similarity=0.889 Sum_probs=123.6
Q ss_pred cCCCeeeeceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcE
Q 009720 393 FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 472 (527)
Q Consensus 393 ~~~p~~i~~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 472 (527)
|+||+++.++.|.||+|++||+|+++.|++|+||++|+|+++|.|+++++++++++....+...-.....-.+.||++|+
T Consensus 1 ~lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~ 80 (135)
T d1yp2a1 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCH 80 (135)
T ss_dssp CCCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCE
T ss_pred CCCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceE
Confidence 57999999999999999999999988999999999999999999999999999999888777443322222389999999
Q ss_pred EeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 473 IRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 473 I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
|.+|+|++|++||++++|.+...+++.+++++++++++|+++|++|++|++|++|
T Consensus 81 I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 81 IKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp EESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred eccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 9999999999999999999999999999999999999999999999999999987
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=9.3e-16 Score=145.51 Aligned_cols=217 Identities=11% Similarity=0.071 Sum_probs=133.9
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
++.|||||||.||||. ..+||||+||+|+ |||+|+++.+.++ ++++|+|+++++.+.+..+.. .. .
T Consensus 3 ~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~----~~---~-- 69 (225)
T d1i52a_ 3 DVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPL----AN---H-- 69 (225)
T ss_dssp CEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGG----GG---C--
T ss_pred CEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhhh----cc---c--
Confidence 4689999999999997 4789999999999 9999999999987 689999999887655432221 11 1
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
..+.+.... .++.++++.+...+. +.+.+++..+|..+ . ..+..+++..... ....+.+.+
T Consensus 70 ~~v~~~~~~-----------~~~~~sv~~~~~~~~-----~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~-~~~~v~~~~ 132 (225)
T d1i52a_ 70 PQITVVDGG-----------DERADSVLAGLKAAG-----DAQWVLVHDAARPCLHQDDLARLLALSETS-RTGGILAAP 132 (225)
T ss_dssp TTEEEEECC-----------SSHHHHHHHHHHTST-----TCSEEEECCTTCTTCCHHHHHHHHGGGGTC-SSCEEEEEE
T ss_pred cccccccCC-----------cchhHHHHhhhcccC-----ccceeeeeccCCCCCCHHHHHHHHhhhhhc-ccccccccc
Confidence 124433221 256789988887765 34678888888633 3 3356665555443 344555555
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
..+. ........+......++.. .....+.+.|..+.+...+++.....
T Consensus 133 ~~d~-----~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~~- 181 (225)
T d1i52a_ 133 VRDT-----MKRAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNEG- 181 (225)
T ss_dssp CCSC-----EEEECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHTT-
T ss_pred eeec-----cchhcccccccccccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhcC-
Confidence 4431 1111122233332222211 22344677888887777666543322
Q ss_pred chhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHh
Q 009720 331 DFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 331 d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~l 371 (527)
.+.+|....+.. +.++..+.-+..-..|+||+|+..|+..+
T Consensus 182 ~~~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 182 ATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp CCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 223554544443 36676665332225699999999997654
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.58 E-value=7.1e-15 Score=140.13 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=124.4
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
+++.+||||||.||||. ...||+|+||+|+ |||+|+++.+.++ .+++|+|+++....++ + +.+.. .+.
T Consensus 3 k~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~---~-~~~~~---~~~ 71 (226)
T d1w77a1 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDI---F-EEYEE---SID 71 (226)
T ss_dssp TCEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHH---H-HTTTT---SCS
T ss_pred CceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhh---h-hcccc---ccc
Confidence 56889999999999997 4689999999999 9999999999988 5789999987544333 2 23311 121
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
..+.++... ..+.++++.++..+. ...+.+++..||.-+ . ..+..+++.+.+.+.. +.+.
T Consensus 72 -~~~~~~~gg-----------~~r~~sv~~~l~~~~----~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~--i~~~ 133 (226)
T d1w77a1 72 -VDLRFAIPG-----------KERQDSVYSGLQEID----VNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAA--VLGV 133 (226)
T ss_dssp -SEEEEECCC-----------SSHHHHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEE--EEEE
T ss_pred -ccccccccc-----------chhhhhhhhhHhhhc----cccccceecccccccccHHHhhhhhhhhhccCce--eecc
Confidence 124433211 135788888876664 245778888999844 3 3467888877666543 3333
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
+..+.. .+ ...++......+. ...+..-+.+.|+.+.|.+.++......
T Consensus 134 ~~~d~~--~~----~~~~~~~~~~~~r-------------------------~~~~~~~~p~~f~~~~l~~~~~~~~~~~ 182 (226)
T d1w77a1 134 PAKATI--KE----VNSDSLVVKTLDR-------------------------KTLWEMQTPQVIKPELLKKGFELVKSEG 182 (226)
T ss_dssp ECCSCC--CC----BCTTSCBC-------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSC
T ss_pred ccccce--EE----EccCCceeecccc-------------------------hhhhHHHHHHhHhhHHHHHHHHHHHhcC
Confidence 333211 00 0112222111110 1134455778999988877665433222
Q ss_pred CchhhhhHHhhh-hcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 330 NDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 330 ~d~~~dii~~li-~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
.. .+|....+. ...++..+.-+..-..|+||+|+..|+..|.
T Consensus 183 ~~-~TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL~ 225 (226)
T d1w77a1 183 LE-VTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (226)
T ss_dssp CC-CCC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHHH
T ss_pred CC-cCcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHhC
Confidence 22 233222222 2466765543323346999999999976653
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.57 E-value=1.1e-13 Score=131.69 Aligned_cols=218 Identities=10% Similarity=0.059 Sum_probs=121.9
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
++..|||||||.||||+ ..+||+|++|+|+ |||+|+++.+.+++ +++|+|++... +.+.+++...+ ..
T Consensus 2 ~K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~-~~----- 70 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAF-PQ----- 70 (226)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHC-TT-----
T ss_pred CceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecchh-hhhhhhhcccc-cc-----
Confidence 45569999999999996 5689999999999 99999999999985 57777777554 44555654332 11
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhh-hcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~-~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~ 248 (527)
.+.+.... ....++++.++..+.+. .....+.+++..||. +.. ..+..+++.+...+.+.. ..
T Consensus 71 --~~~~~~g~-----------~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i-~~ 136 (226)
T d1vgwa_ 71 --VRVWKNGG-----------QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGI-LA 136 (226)
T ss_dssp --SEEECCCC-----------SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEE-EE
T ss_pred --eeeccccc-----------cccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhccccccee-ec
Confidence 12222211 12344555554444321 123456788888986 333 447888988877766543 33
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+..+ ..... +++.+....++.... ....-..|..+.|.+.+....
T Consensus 137 ~~~~~------~~~~~-~~~~i~~~~~r~~~~-------------------------~~~~p~~f~~~~l~~~~~~~~-- 182 (226)
T d1vgwa_ 137 VPVAD------TLKRA-ESGQISATVDRSGLW-------------------------QAQTPQLFQAGLLHRALAAEN-- 182 (226)
T ss_dssp EECCS------CEEEE-SSSBEEEEECCTTEE-------------------------EEEEEEEEEHHHHHHHHHC----
T ss_pred ccccc------cceec-cCCeEEeccchHHHH-------------------------HHHhhhcccHHHHHHHHHHhh--
Confidence 33322 22233 567776666544321 112235677777765554321
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHH
Q 009720 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (527)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ 370 (527)
..+ .+|....+.+ +.++..+.-+....+|+||+|+..|...
T Consensus 183 ~~~-~tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~l 224 (226)
T d1vgwa_ 183 LGG-ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 224 (226)
T ss_dssp --C-CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred cCC-CCcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHH
Confidence 112 2343333322 4667766544445789999999999654
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=5.1e-14 Score=133.47 Aligned_cols=209 Identities=12% Similarity=0.127 Sum_probs=127.8
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V 175 (527)
|||||||.||||+ ...||+|++|+|+ |||+|+|+.+..+ ++++|+|+++.... .++...+ . ....+
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~---~~~~~~~-~-----~~~~~ 72 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWF---EVVEKRV-F-----HEKVL 72 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGH---HHHHTTC-C-----CTTEE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhh---hHHHhhh-c-----ccccc
Confidence 8999999999996 4689999999999 9999999999987 68999999875432 2332211 1 11234
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.++... .+..+++..+...+.. ...+.++++.||..+ ...+..+++.+.+... .+...+..+
T Consensus 73 ~~~~~~-----------~~~~~s~~~~~~~~~~---~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~d 136 (221)
T d1vpaa_ 73 GIVEGG-----------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNSD 136 (221)
T ss_dssp EEEECC-----------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECCS
T ss_pred cccccc-----------ccccchHHHHHHHHHh---cCCCcEEEeccccccccHHHHHhhhhhhccccc--ccccccccc
Confidence 444322 1445666666655542 356889999999854 3446888887766543 233333221
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~ 333 (527)
.+...+ +++...+ . . ...+...+-+.|+.+.|.+..++. .+ .
T Consensus 137 ------~~~~~~-~~~~~~~-~--~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~----~~-~ 178 (221)
T d1vpaa_ 137 ------ALVRVE-NDRIEYI-P--R-----------------------KGVYRILTPQAFSYEILKKAHENG----GE-W 178 (221)
T ss_dssp ------EEEEEE-TTEEEEE-C--C-----------------------TTEEEEEEEEEEEHHHHHHHHTTC----CC-C
T ss_pred ------eeEeec-Cccceec-c--h-----------------------HHHHHhhhhhhhhHHHHHHHHHhC----CC-C
Confidence 122221 2222111 1 1 113455677888888776654322 12 2
Q ss_pred hhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 334 SEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 334 ~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
+|.+..+... .++..+..+.....|+||+|+..|...+-
T Consensus 179 tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk 218 (221)
T d1vpaa_ 179 ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 218 (221)
T ss_dssp SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHh
Confidence 3434444433 66766654434457999999998876553
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.42 E-value=9.5e-12 Score=118.90 Aligned_cols=237 Identities=14% Similarity=0.167 Sum_probs=148.0
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
..|||+|.|.++|+ .-|+|.+|+|+ |||+|+++.+.++++++|+|.|. ++++.++.. .| +. .
T Consensus 2 ~i~iIpAR~gSkri------p~KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~-~~-------g~-~ 63 (246)
T d1vh1a_ 2 FVVIIPARYASTRL------PGKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVE-AA-------GG-E 63 (246)
T ss_dssp CEEEEECCCCCC--------CCTTTCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-HT-------TC-E
T ss_pred EEEEEecCCCCcCC------CCchhhhcCCc-cHHHHHHHHHHHcCCCcEEEEec--Cccccchhh-cc-------cc-c
Confidence 36899999999998 23999999999 99999999999999999999995 456655553 22 21 1
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--CCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+.+...... .|+..+. .+..... ....+.++.+.||..+. .++..+++.+.....+....+.+..
T Consensus 64 v~~~~~~~~---------~~~~~~~-~~~~~~~---~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 130 (246)
T d1vh1a_ 64 VCMTRADHQ---------SGTERLA-EVVEKCA---FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIH 130 (246)
T ss_dssp EEECC--------------CHHHHH-HHHHHTT---CCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECC
T ss_pred ceeeccccc---------ccchHHH-HHHHhhc---ccccceeeeeccccccchhhHHHHHhhhhccccccccccccccc
Confidence 333222211 2554443 3333332 23456889999998653 3578888888888887776666554
Q ss_pred CCC---CCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 253 ESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 253 ~~~---~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
... ..+...+..+.+|++..|...+.......... ........++...|+|+|+++.|.+... ..++.
T Consensus 131 ~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~giy~~~~~~l~~~~~-~~~s~ 201 (246)
T d1vh1a_ 131 NAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAE--------GLETVGDNFLRHLGIYGYRAGFIRRYVN-WQPSP 201 (246)
T ss_dssp CHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSS--------CCCCCCSCCEEEEEEEEEEHHHHHHHHH-SCCCH
T ss_pred chhcccCCCcceeeecccCcccccccccchhhhhhhhh--------hhhccchhhheecceeeechhhhhhhcc-CCCCh
Confidence 311 11233456688899999987664432111000 0001123467789999999999875533 22211
Q ss_pred Cch--hhhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHHh
Q 009720 330 NDF--GSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMAL 371 (527)
Q Consensus 330 ~d~--~~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~l 371 (527)
.+- .-|.++.+-.+.++..+..+.+ ..||+|++||..|...+
T Consensus 202 ~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 202 LEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp HHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 110 0133433333578988888765 57999999999997653
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.40 E-value=1.6e-11 Score=117.63 Aligned_cols=243 Identities=13% Similarity=0.180 Sum_probs=150.3
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
..+||+|.|.++|+ ..|+|.+|+|+ |||+|+++.+.++++++|+|.|.. +++.+.. +.| +. .
T Consensus 2 ~~~iIpAR~gSkRl------p~Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsTd~--~~i~~~~-~~~-------~~-~ 63 (255)
T d1vica_ 2 FTVIIPARFASSRL------PGKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVA-KSF-------GA-E 63 (255)
T ss_dssp CEEEEECCCCCSSS------TTGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHH-HHT-------TC-E
T ss_pred EEEEEecCCCCCCC------CCchhhhhCCc-CHHHHHHHHHHHCCCCeEEEEcCC--cccchhh-hhh-------cc-c
Confidence 36899999999997 22999999999 999999999999999999888854 4454443 332 11 1
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--CCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+.+..... ..|+..+...+.+.. ..+.+.++++.||..+. ..+..+++.+.....+.+.......
T Consensus 64 ~~~~~~~~---------~~~~~~~~~~~~~~~----~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 130 (255)
T d1vica_ 64 VCMTSVNH---------NSGTERLAEVVEKLA----IPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIH 130 (255)
T ss_dssp EEECCCSS---------CCHHHHHHHHHHHTT----CCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred cceeeecc---------CCcchhhHHHHHHhh----ccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeecc
Confidence 22222221 135555544433322 23456788899998653 3478888888887777776665543
Q ss_pred CC---CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 253 ES---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 253 ~~---~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
.. ..........++++++..+...+.......... ............+....|+|+|+++.|..+... .+..
T Consensus 131 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~ 205 (255)
T d1vica_ 131 DAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMN----LQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APTQ 205 (255)
T ss_dssp CHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTT----CSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred chhhccCccceeeeeccCCcccccccccccccchhhhh----ccchhhcccccchheeeeeecccHHHHhhhhcc-CCCh
Confidence 21 112344567788899999887765322110000 000001111234667889999999998765432 1211
Q ss_pred Cchhh--hhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHHhhc
Q 009720 330 NDFGS--EIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 330 ~d~~~--dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~ll~ 373 (527)
.+-.. |.+..+-.+.+|..+..+.. +.||+|++||..|...+..
T Consensus 206 le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilkk 252 (255)
T d1vica_ 206 LENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAA 252 (255)
T ss_dssp HHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHHH
Confidence 11000 12222233468888877654 7899999999999876653
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.39 E-value=2e-11 Score=116.32 Aligned_cols=230 Identities=14% Similarity=0.201 Sum_probs=142.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
+..+||+|.|.++|| ..|+|++|+|+ |||+|+++++.++ ++++|+|++.. +.+.... +.| +
T Consensus 2 k~i~iIpAR~~SkRl------~~Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td~--~~i~~~~-~~~-------~- 63 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRL------PGKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAV-QAF-------G- 63 (245)
T ss_dssp CEEEEEECCSCCSSS------TTGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHH-HHT-------T-
T ss_pred CEEEEEcCCCCCcCC------CCccccccCCc-cHHHHHHHHHHhCCCCCeEEEeccc--ccchhhh-hhc-------C-
Confidence 467999999999998 24999999999 9999999999988 68899888864 3343333 222 2
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--CCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
.+++..... ..++.+.+..+...+. .+.++++.||..+. ..+..+++.+.............
T Consensus 64 --~~~~~~~~~--------~~~~~~~~~~~~~~~~------~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~ 127 (245)
T d1h7ea_ 64 --GKAIMTRND--------HESGTDRLVEVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH 127 (245)
T ss_dssp --CEEEECCSC--------CSSHHHHHHHHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred --ceEEEecCc--------cccccHHHHHHHHhcC------CCEEEEecchhhhcccccchhhhhccccccccccccccc
Confidence 122211111 1245556666655553 47788899998653 34688888777665543333322
Q ss_pred cCC--CCCC-CceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 251 VGE--SRAS-DYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 251 ~~~--~~~~-~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
... .... ....+.....+.+..+...+...... .........+|+|.|+++.|.++.. ..+
T Consensus 128 ~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~l~~~~~-~~~ 191 (245)
T d1h7ea_ 128 AISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRN---------------AEKARYLKHVGIYAYRRDVLQNYSQ-LPE 191 (245)
T ss_dssp EECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTT---------------GGGCCEEEEEEEEEEEHHHHHHGGG-SCC
T ss_pred ccccccccCCcceeeccchhhhhhhhhhhhhhhhhc---------------ccccccceeeeeEEeeecccccccc-ccC
Confidence 211 1111 23334555566777777665533211 1112356788999999999876532 112
Q ss_pred CCCchhh--hhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 328 TSNDFGS--EIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 328 ~~~d~~~--dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
+...... |.++.+-.+.++.++.+++.|.+|+|++||..|...+.+
T Consensus 192 s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~ 239 (245)
T d1h7ea_ 192 SMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp CHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 1111111 234422245789999988888899999999999776643
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=3.7e-13 Score=128.03 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=86.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
..|||||||+|+||++++. .||+|+||+|+ |||+|+++.+.++|+++|++++++..... .
T Consensus 3 ~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~~--------------~---- 62 (231)
T d2dpwa1 3 PSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVPA--------------P---- 62 (231)
T ss_dssp CEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSSC--------------C----
T ss_pred ceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccce--------------e----
Confidence 4799999999999999873 58999999999 99999999999999999998887643211 0
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
... +. +..|+.++++.++..++ +.++++.||. +.. ..+..+++.+. +.+..+.+.+.
T Consensus 63 ~~~----~~-------~~~~~~~~v~~al~~~~-------~~~lv~~~D~P~i~~~~i~~l~~~~~--~~~~~~~~~~~ 121 (231)
T d2dpwa1 63 ALT----LP-------DRGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLDKAP--EAALVYPIVPK 121 (231)
T ss_dssp SEE----EC-------CCSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHHHCC--SCSEEEEEEEH
T ss_pred eee----cc-------cchHHHHHHHHHHHhhc-------CceEEeeCCCccCCHHHHHHHHHHhh--hcCceEEEEec
Confidence 011 11 12488999999886653 6899999998 333 44678877654 34555555544
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.8e-11 Score=110.67 Aligned_cols=110 Identities=12% Similarity=0.150 Sum_probs=74.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|.++.|||||||+||||+. .||+|+|++|+ |||+|+++.+... +.+|+|+++...+.. .. ++
T Consensus 1 M~~i~~iILAgG~ssRmG~----~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~-----~~-------~~ 62 (188)
T d1e5ka_ 1 MTTITGVVLAGGKARRMGG----VDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIY-----QA-------SG 62 (188)
T ss_dssp CCSEEEEEECCCCCSSSCS----SCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHH-----HT-------TS
T ss_pred CCceeEEEEcCCCCcCCCC----CCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhh-----hh-------cC
Confidence 5678999999999999962 58999999999 9999999998876 567888877643211 11 11
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCH-HHHHH
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDY-MDFIQ 235 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl-~~ll~ 235 (527)
+.+....... ..|...++..+.... ..+.++++.||+-+ ..++ ..+++
T Consensus 63 ---~~v~~d~~~~-------~~~~~~g~~~~~~~~------~~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 63 ---LKVIEDSLAD-------YPGPLAGMLSVMQQE------AGEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp ---CCEECCCTTC-------CCSHHHHHHHHHHHC------CSSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ---CCcccccccc-------ccchhHHHHHHHHhc------ccceEEEeccCCCCCCHHHHHHHHH
Confidence 2222211111 135666666665433 35889999999944 5554 44444
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.25 E-value=8.8e-12 Score=121.44 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=49.7
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEE-----EccCCEeCCCccC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGMVI 527 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v-----i~~~~~I~~g~vi 527 (527)
+.||++++|. ++.|++++.||+++.|.+...+...+.++++++|..+..+ ||++|.|++|++|
T Consensus 109 T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~V 177 (262)
T d2jf2a1 109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGV 177 (262)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEE
T ss_pred eEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhceeeccceE
Confidence 6777777775 5888999999999999999888888888888888777543 5666666666653
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.19 E-value=4.9e-11 Score=112.22 Aligned_cols=132 Identities=18% Similarity=0.276 Sum_probs=82.7
Q ss_pred CCccCCCeeeec-eee-eeeEECCCCEEcc-eeE-----eecEEcCCcEECCCCEEeeeEEeCCcccCchh--------h
Q 009720 390 SPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQTES--------E 453 (527)
Q Consensus 390 ~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i-----~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~--------~ 453 (527)
+|.+.|.+.|++ +.| .++.||++|+|++ |.| ....||++|.|+++|.|+.....+.+-..... .
T Consensus 22 ~p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~ 101 (210)
T d1qrea_ 22 APVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKE 101 (210)
T ss_dssp CCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEE
T ss_pred CCccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccc
Confidence 344555555543 333 4566677777763 444 24689999999999999654433321110000 0
Q ss_pred HHhhhcCCccceEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 454 IASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 454 ~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
....++++ +.||+++.|. +|.||+++.||.+++|.+. .+++++.++.+..+.+ ++|++++.|++|+++
T Consensus 102 ~~~~IG~~---v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~-~IG~~~vIg~~svv~g--~~i~~g~~I~~g~~v 170 (210)
T d1qrea_ 102 YAVYIGNN---VSLAHQSQVHGPAAVGDDTFIGMQAFVFKS-KVGNNCVLEPRSAAIG--VTIPDGRYIPAGMVV 170 (210)
T ss_dssp ESEEECTT---CEECTTCEEEEEEEECTTCEECTTCEEEEE-EECTTCEECTTCEEES--CEECTTBEECTTCEE
T ss_pred cceeeccc---cccccccccccCCcccCCcEeeCCcccccc-ccccCcEEecCcEecC--cEeCCCcEECCCcEE
Confidence 01223344 7777778775 6999999999999999875 4666666666655533 556888888888764
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.16 E-value=3.6e-10 Score=105.57 Aligned_cols=217 Identities=17% Similarity=0.173 Sum_probs=133.3
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
++.-|||+|.|.++|+ | .|+|++|+|+ |||+|+++.+.+++ +++|+|.+. .+.+.+.+ +.| +
T Consensus 3 ~~~iaiIpar~~S~R~-p-----~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~td--~~~i~~i~-~~~-------~ 65 (225)
T d1eyra_ 3 KQNIAVILARQNSKGL-P-----LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTD--GGLIAEEA-KNF-------G 65 (225)
T ss_dssp CEEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHH-HHT-------T
T ss_pred CCEEEEEccCCCCcCC-C-----CccccccCCe-EHHHHHHHHHHHcCCCceEEEeec--cchhhhhh-hhh-------c
Confidence 3445899999988898 3 4999999999 99999999999997 588888774 45554443 343 2
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--CCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
. .+ +....... ....++.+.++.+...+. ...+.++++.||.-+. .++..+++.+.+.+.+..+.+.
T Consensus 66 ~-~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~ 134 (225)
T d1eyra_ 66 V-EV-VLRPAELA-----SDTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSAC 134 (225)
T ss_dssp C-EE-EECCHHHH-----STTCCHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEE
T ss_pred c-ee-eeeccccc-----cccccchhhccccccccc----cccceEEEeeccccccccccccccceeeccccccccceee
Confidence 1 11 11111111 011245566666665554 3468899999998553 4588889888888877666666
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
..... ..+..+ ..+++.+..+........ ........+..+.++|+|+++.|.+. . .
T Consensus 135 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~y~~~g~iy~~~~~~l~~~-~-~---- 191 (225)
T d1eyra_ 135 PMEHH--PLKTLL-QINNGEYAPMRHLSDLEQ--------------PRQQLPQAFRPNGAIYINDTASLIAN-N-C---- 191 (225)
T ss_dssp ECSSC--TTSCEE-ECSSSCEEESSCGGGGTS--------------CGGGSCCEEEEEEEEEEEEHHHHHHH-T-S----
T ss_pred ccccc--cccccc-cccccccccccccccccc--------------ccccCcceeeecceeEEeeHHHHHHc-C-C----
Confidence 55431 123333 335565554433221110 00011123567889999999987542 0 0
Q ss_pred CchhhhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHHh
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMAL 371 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~l 371 (527)
.-..++..+..+.. ..||+|++||..|...+
T Consensus 192 -----------~~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 192 -----------FFIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp -----------SCCSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred -----------ccCCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 01134555555432 46999999999997543
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.12 E-value=1.5e-10 Score=112.34 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=37.1
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe-----EEEccCCEeCCCccC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMVI 527 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~I~~g~vi 527 (527)
+.||+++.|. ++.|+.++.||.++.+.+...+.....+++++.|..+. +.||++|.|++|++|
T Consensus 104 t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV 172 (259)
T d1j2za_ 104 TLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSAL 172 (259)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEeccceeeeeeeee
Confidence 6677777774 45566666666666655555544444445444444442 335777777777764
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.10 E-value=1.7e-09 Score=109.88 Aligned_cols=215 Identities=13% Similarity=0.180 Sum_probs=142.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC-CcchhHHHHHHHHHH----cCC-CEEEEEeccC-chhHHHHHHHhh-
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCIN----SGI-NKIFVLTQFN-SASLNRHIARTY- 163 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~----~Gi-~~I~Iv~~~~-~~~i~~hl~~~y- 163 (527)
.+++.+|+||||.||||+ ...||+++||+ |+ ++++..++++.. .|. -.++|.|++. .++..+|+. .|
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~-t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~-~~~ 146 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGL-TFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVE-KYT 146 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTE-EHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHG-GGT
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCC-CHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHH-Hhc
Confidence 478999999999999985 56999999997 65 999999999875 243 2578888764 566777774 44
Q ss_pred -ccCCcc-cCCCeEEEecc------ccCCCCCCCCc-ccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceeecCCHHH
Q 009720 164 -FGNGTN-FGDGFVEVLAA------TQTPGESGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMD 232 (527)
Q Consensus 164 -~~~~~~-~~~~~V~vl~~------~q~~~~~~~~~-~~Gta~al~~a~~--~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ 232 (527)
++.... |..+.+..+.. ..........| +.|+|+..+.... .++++...+.+.+.+.+.|++....--.
T Consensus 147 ~fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~ 226 (378)
T d2icya2 147 NSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT 226 (378)
T ss_dssp TSSSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHH
T ss_pred cCCCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchH
Confidence 332111 11111111100 00000011123 4699887776543 3666666788999999999988655578
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEE
Q 009720 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYV 312 (527)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYi 312 (527)
++..|.++++++++-+.+...+....-.++..|..-+|+++.|.|.....+ ..-+ ..-.+.+++.+.
T Consensus 227 ~lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~-~~~~------------~~~~~~N~nn~~ 293 (378)
T d2icya2 227 ILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNE-FKSI------------EKFKIFNTNNLW 293 (378)
T ss_dssp HHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHH-HHSS------------SSCCEEEEEEEE
T ss_pred HHHHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhh-hcCC------------cCcceeeeeeee
Confidence 899999999999998888765444445567776666677777777543211 0000 012357999999
Q ss_pred EeHHHHHHHHHh
Q 009720 313 FKKDVLFKLLRW 324 (527)
Q Consensus 313 f~~~iL~~ll~~ 324 (527)
|+-+.|.++++.
T Consensus 294 ~~l~~l~~~~~~ 305 (378)
T d2icya2 294 VNLKAIKKLVEA 305 (378)
T ss_dssp EEHHHHHHHHHT
T ss_pred eeHHHHHHHHhh
Confidence 999999888764
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.01 E-value=6.3e-10 Score=108.01 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=28.1
Q ss_pred CCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeC
Q 009720 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~ 444 (527)
++++.|++++.+.+.++|.+ ++.|+++|+|++ ++.||++|+|+++|.|.+....+
T Consensus 3 ~~~~~I~p~a~I~~~~~Ig~----~v~Ig~~~~I~~----~v~Ig~~~~I~~~~~I~~~~~ig 57 (262)
T d2jf2a1 3 DKSAFVHPTAIVEEGASIGA----NAHIGPFCIVGP----HVEIGEGTVLKSHVVVNGHTKIG 57 (262)
T ss_dssp CTTCEECTTCEECTTCEECT----TCEECTTCEECT----TEEECTTCEECSSCEECSEEEEC
T ss_pred CCCCEECCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEEeCCEEEcCCcccc
Confidence 34455555555555555543 555666666652 24455555555555554443333
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=1.1e-09 Score=86.32 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=45.5
Q ss_pred eeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~ 483 (527)
++.||++|.|++ +.++ ++.||++|+||++|.|+++.++.+ +.|++++.|++|+|++|+.
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~-------------------~~I~~~s~i~~~~Ig~~~~ 74 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAACT 74 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEEESEEECTTCE
T ss_pred cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC-------------------CEEcCCcEEECCEECCCCE
Confidence 344555555552 3343 478888888888888888877766 7888888888888888888
Q ss_pred ECCC
Q 009720 484 IGKD 487 (527)
Q Consensus 484 Ig~~ 487 (527)
||+.
T Consensus 75 IGPf 78 (78)
T d1fxja1 75 IGPF 78 (78)
T ss_dssp ESCC
T ss_pred ECcC
Confidence 8863
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=3.6e-09 Score=99.02 Aligned_cols=217 Identities=14% Similarity=0.194 Sum_probs=127.4
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
|.++.|||+|.|.++|| | -|+|.+++|+ |||+|+++++.+++ +++|+|.+. .+.+.+... .|
T Consensus 1 ~~ki~aiIpaR~~S~Rl-p-----~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivstd--~~~i~~~~~-~~------- 63 (228)
T d1qwja_ 1 PPHLAALVLARGGSKGI-P-----LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAK-QF------- 63 (228)
T ss_dssp CCCEEEEEECCSCCSSS-S-----CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHH-HT-------
T ss_pred CCCEEEEeccCCCCCCC-C-----CcchhhhCCe-eHHHHHHHHHHhcCCcceEEEecc--hhhhhhhhh-hc-------
Confidence 35789999999999999 3 4999999999 99999999999986 688888874 445544442 32
Q ss_pred CCCeEEEe-ccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEE
Q 009720 171 GDGFVEVL-AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITIS 247 (527)
Q Consensus 171 ~~~~V~vl-~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~ 247 (527)
+ +.++ ......+. .....+.+..+.... ...+.++++.+|.-+ ..++.++++.+.+.+.|..+.
T Consensus 64 ~---~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~-----~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~ 130 (228)
T d1qwja_ 64 G---AQVHRRSSETSKD-----SSTSLDAIVEFLNYH-----NEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFS 130 (228)
T ss_dssp T---CEEEECCGGGSST-----TCCHHHHHHHHHTTC-----TTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEE
T ss_pred C---ccccccccccccc-----cchhhhhhhhccccc-----cccceeeeecccccccCchhhhhhhhhhhccCcccccc
Confidence 2 1221 11111110 024455665444322 235778888898744 346899999998888987777
Q ss_pred EEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 248 ~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
+...... .+..+.....+........+... .........+..+.++|+++.+++.. .
T Consensus 131 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~qd~~~~y~~ng~~~~~k~~~~~~---~--- 187 (228)
T d1qwja_ 131 VVRRHQF---RWSEIQKGVREVTEPLNLNPAKR--------------PRRQDWDGELYENGSFYFAKRHLIEM---G--- 187 (228)
T ss_dssp EEEECCC---EECCCCSSTTCCCCBSSSBTTBC--------------CCTTTSCCEEEEEEEEEEEEHHHHHT---T---
T ss_pred ccccccc---cchhhhhhccccccchhhhhhhc--------------cccccccceeeeeeEEEEEeHHHHhh---C---
Confidence 6654321 11111110111100000000000 00000112356677888888776641 1
Q ss_pred CCCchhhhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHHhhc
Q 009720 328 TSNDFGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~ll~ 373 (527)
. +...++..|..+.+ -.||+|++||..|...+..
T Consensus 188 ---~---------~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k 222 (228)
T d1qwja_ 188 ---Y---------LQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (228)
T ss_dssp ---C---------SSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ---C---------cCCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence 0 11245666776543 4699999999999877764
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.92 E-value=2e-09 Score=100.90 Aligned_cols=97 Identities=10% Similarity=0.153 Sum_probs=74.6
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEee----eEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-------
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR------- 474 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~------- 474 (527)
+++|.+++.|. .++.||++|.|+++|.|+. .+..|++ +.|++++.|+
T Consensus 28 ~a~I~p~A~i~----g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~ 85 (210)
T d1qrea_ 28 TAYIDPQASVI----GEVTIGANVMVSPMASIRSDEGMPIFVGDR------------------SNVQDGVVLHALETINE 85 (210)
T ss_dssp TCEECTTCEEE----ESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECCSBCT
T ss_pred CCEECCCCEEe----cceEECCCCEEccCeeeecccCCceEEccc------------------ceeeeeeEeccceeecc
Confidence 44555555443 4578999999999999953 4555554 7777777773
Q ss_pred -----------------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 475 -----------------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 475 -----------------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
.|+||+|+.||.++.|.+...+++++.++.+++|.++ +||++|.|+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~--~IG~~~vIg~~sv 152 (210)
T d1qrea_ 86 EGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKS--KVGNNCVLEPRSA 152 (210)
T ss_dssp TSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE--EECTTCEECTTCE
T ss_pred ccccccCccccccccccceeeccccccccccccccCCcccCCcEeeCCcccccc--ccccCcEEecCcE
Confidence 4889999999999999887788888899988888764 5789998887765
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.91 E-value=4.4e-09 Score=95.17 Aligned_cols=112 Identities=19% Similarity=0.356 Sum_probs=70.2
Q ss_pred CCCCCCccCCCeeeeceeeeeeEECCCCEEcc-eeE----eecEEcCCcEECCCCEEeee----EEeCCcccCchhhHHh
Q 009720 386 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTV----EHSIVGERSRLDYGVELKDT----VMLGADYYQTESEIAS 456 (527)
Q Consensus 386 ~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i----~~svIg~~~~I~~~~~I~~~----~i~~~~~~~~~~~~~~ 456 (527)
.|.+.+.+.|.+.|. .++.||++|+|++ +.| ....||+++.+++++.+..+ +..+++
T Consensus 14 ~Ig~~~~I~~~a~I~----~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~---------- 79 (172)
T d1xhda_ 14 KIASSAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD---------- 79 (172)
T ss_dssp EECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT----------
T ss_pred EECCCcEECCCCEEe----CCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeee----------
Confidence 334444444444443 3566666666663 444 23588888888888887764 233332
Q ss_pred hhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 457 ~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.++.++.+.++.|++++.||.+++|..... ++++++|..| ++|.++..|+++++
T Consensus 80 --------~~~~~~~~~~~~~i~~~~~ig~~~~i~~gv~------IG~~~~Igag-svV~~~~~i~~~~v 134 (172)
T d1xhda_ 80 --------VTVGHQVILHSCHIKKDALIGMGSIILDGAE------IGEGAFIGAG-SLVSQGKKIPPNTL 134 (172)
T ss_dssp --------CEECTTCEEESCEECTTCEECTTCEECTTCE------ECTTCEECTT-CEECTTCEECTTEE
T ss_pred --------eeeeeeecccccccccceEEecccEeeCCcE------EcCcccccce-EEEeeCeEECCCeE
Confidence 6677777777888888888888888877644 4455555555 44466666766665
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.91 E-value=2.2e-09 Score=103.89 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeE-eecEEcCCcEECCCCEE
Q 009720 383 PKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVEL 437 (527)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I 437 (527)
|++-|.+++.+.++++|.+ |.| .+++|+++|+|++ +.| .++.||++|.|.++|.|
T Consensus 5 ~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~I 63 (259)
T d1j2za_ 5 KTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 63 (259)
T ss_dssp TTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEE
Confidence 3333444444444444432 333 2344555555542 333 23444444444444444
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.91 E-value=5.1e-09 Score=96.84 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=12.2
Q ss_pred eEEecCCHHHHHHHHHHhhcc
Q 009720 354 YWEDIGTIKSFYEANMALTKE 374 (527)
Q Consensus 354 ~w~dIgt~~d~~~An~~ll~~ 374 (527)
+..-||++..-.+....+.+.
T Consensus 49 ~~iaIG~~~~R~~~~~~~~~~ 69 (193)
T d3bswa1 49 FFIAIGNNEIRKKIYQKISEN 69 (193)
T ss_dssp EEECCSCHHHHHHHHHHHHHT
T ss_pred EEEEECCcHHHHHHHHHhhhh
Confidence 345688887655555555443
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=98.90 E-value=1e-09 Score=102.71 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=83.1
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
++.+||||||.|+||+ ...||+|++++|+ |||+|+++++.+.. +++|+|++.. . +++ +.+. .
T Consensus 1 ~is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~~-~----~~~-~~~~-~------ 63 (205)
T d1w55a1 1 EMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSSN-I----TYM-KKFT-K------ 63 (205)
T ss_dssp CEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEESC-H----HHH-HTTC-S------
T ss_pred CeEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhcccccccccccc-c----ccc-cccc-c------
Confidence 3678999999999997 4689999999999 99999999998874 6788777643 2 222 2221 1
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eecC-CHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
.+.++... ..-.++++.++..++ .+.+++..||. +... .+.++++.+.+ .++.+.+.+
T Consensus 64 -~~~~v~Gg-----------~~r~~Sv~~gl~~~~------~~~VlIhd~~rP~i~~~~i~~li~~~~~--~~~~i~~~~ 123 (205)
T d1w55a1 64 -NYEFIEGG-----------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDK--ADCITPALK 123 (205)
T ss_dssp -SSEEEECC-----------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGG--CSEEEEEEC
T ss_pred -cccccccc-----------cchhhhhhhhhhhhh------hcceeeeccCcccCcHHHHHHHHhhhhc--ccccccccc
Confidence 13333211 134578888776553 46788889997 4443 36778776654 345666665
Q ss_pred cCC
Q 009720 251 VGE 253 (527)
Q Consensus 251 ~~~ 253 (527)
+.+
T Consensus 124 ~~d 126 (205)
T d1w55a1 124 VAD 126 (205)
T ss_dssp CCS
T ss_pred ccc
Confidence 544
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=3.4e-09 Score=83.52 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=57.6
Q ss_pred ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCcc
Q 009720 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADR 501 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~ 501 (527)
+..||.+|.|++++.|+..+.+|++ +.||+||.|++|.|++|++|++++.|.+
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~------------------v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~--------- 66 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHR------------------VKIGTGCVIKNSVIGDDCEISPYTVVED--------- 66 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTT------------------CEECTTCEEESCEECTTCEECTTCEEES---------
T ss_pred cEEECCCCEECCccEEeCCcEECCC------------------CEECCCeEEecCEECCCCEEcCCcEEEC---------
Confidence 4789999999999999988877776 9999999999999999999999999964
Q ss_pred CCCceEEecCeEEEccCCEeCC
Q 009720 502 PELGFYIRSGITIIMEKATIED 523 (527)
Q Consensus 502 ~~~~~~i~~g~~vi~~~~~I~~ 523 (527)
++|++++.||+
T Consensus 67 -----------~~Ig~~~~IGP 77 (78)
T d1fxja1 67 -----------ANLAAACTIGP 77 (78)
T ss_dssp -----------EEECTTCEESC
T ss_pred -----------CEECCCCEECc
Confidence 67899999886
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.88 E-value=6.9e-09 Score=93.84 Aligned_cols=101 Identities=21% Similarity=0.406 Sum_probs=78.7
Q ss_pred eEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-----e
Q 009720 407 AIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-----C 476 (527)
Q Consensus 407 s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-----~ 476 (527)
..||++|+|++ +.| .++.||++|+|+++|+|... +.+|.+ +.++.++.+.. +
T Consensus 13 ~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~------------------~~i~~~~~~~~~~~~~~ 74 (172)
T d1xhda_ 13 PKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYPL 74 (172)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCCE
T ss_pred CEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccce------------------eeeeeeceeccCCcCCe
Confidence 45566666663 444 46899999999999999754 455554 77777777763 7
Q ss_pred EEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 477 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 477 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+|++++.++.++.+.+ ..+++.+.++.++.|..| ++||++|.|++|++|
T Consensus 75 ~ig~~~~~~~~~~~~~-~~i~~~~~ig~~~~i~~g-v~IG~~~~IgagsvV 123 (172)
T d1xhda_ 75 ILEDDVTVGHQVILHS-CHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLV 123 (172)
T ss_dssp EECTTCEECTTCEEES-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred eeeeeeeeeeeecccc-cccccceEEecccEeeCC-cEEcCcccccceEEE
Confidence 8999999999998865 468888899999999888 566999999999875
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=4.9e-09 Score=94.89 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=63.8
Q ss_pred CCCCCCccCCCeeeeceeeeeeEECCCCEEcc-eeE----eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcC
Q 009720 386 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTV----EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 460 (527)
Q Consensus 386 ~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i----~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~ 460 (527)
.|.+++.+.|.+.|. .++.||++|+|++ +.| ....||+++.++.++.+..+...... ...
T Consensus 12 ~I~~~~~I~~~a~I~----g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~-----------~~~ 76 (173)
T d1v3wa_ 12 RIHPSAFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTE-----------IGE 76 (173)
T ss_dssp EECTTCEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEE-----------ECS
T ss_pred EECcCcEECCCCEEe----CceEECCCCEECCCccccccccccccccccccccccccccccCCCcc-----------cCc
Confidence 344444444444443 3566666666663 444 34567778888777777543211100 000
Q ss_pred CccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 461 GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 461 ~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
. +.+........+.||+++.||.++.|... ..++++++|..| ++|.+|..|++++++
T Consensus 77 ~---~~~~~~~~~~~~~Ig~~~~ig~~~~i~~g------v~Ig~~~vIgag-svV~~~~~i~~~~iv 133 (173)
T d1v3wa_ 77 Y---VTIGHNAMVHGAKVGNYVIIGISSVILDG------AKIGDHVIIGAG-AVVPPNKEIPDYSLV 133 (173)
T ss_dssp S---CEECTTCEEESCEECSSEEECTTCEECTT------CEECSSEEECTT-CEECTTCEECTTEEE
T ss_pred c---eeeeeeeeeeeeecCCcccccceeeecCC------EEEcceeEEcCC-cEEeCCeEeCCCCEE
Confidence 0 23334444445555555555555555543 456666777777 555888888888764
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.80 E-value=4.2e-09 Score=96.41 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=34.8
Q ss_pred eCCCcEEeeeEEcCCCEECCCcEEeCCCC-------cCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 467 VGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 467 Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+++++.+.++.++.+..++.++.+..... +++.+..+.++.|..| +.||+++.|++|++|
T Consensus 109 ~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~g-v~IG~~s~IgagsvV 175 (196)
T d1g97a1 109 AGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAP-VELGDNSLVGAGSTI 175 (196)
T ss_dssp EEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-CEECTTCEECTTCEE
T ss_pred ecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCC-cEECCCCEECCCCEE
Confidence 44444444555666666666665544332 3445555555555555 345888888888764
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.71 E-value=2e-08 Score=95.87 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=31.3
Q ss_pred ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-eeeEEcCCCEECCCcEEeCCC
Q 009720 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKD 494 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~ 494 (527)
+++||..|.||.+|.|...+-++.. +++-.-...+++++ |.||.+|.| .+++|++++.||+|+.|..+.
T Consensus 143 ~a~vgs~aqIG~~vhis~g~~igGv-lep~~~~p~iIed~---~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t 212 (274)
T d3tdta_ 143 WATVGSCAQIGKNVHLSGGVGIGGV-LEPLQANPTIIEDN---CFIGARSEVVEGVIVEEGSVISMGVYLGQST 212 (274)
T ss_dssp TEEECTTCEECTTCEECTTCEECCS-BTTBCSSCCEECTT---CEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred cceecceeEECCCeEECCCcEEEec-cccCCCCCcEEecC---cEeccCceEecCEEecCceEeccceEEeccc
Confidence 3555555555555555544444331 22211112222222 333333333 255556666666666665543
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.68 E-value=2.8e-08 Score=90.71 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=12.4
Q ss_pred CCCCCccCCCeeeec-eee-eeeEECCCCEEc
Q 009720 387 FYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR 416 (527)
Q Consensus 387 i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~ 416 (527)
|.+.+.+.+.++|++ +.| .++.||++|.|+
T Consensus 11 I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~ 42 (196)
T d1g97a1 11 IDIDVEIASEVQIEANVTLKGQTKIGAETVLT 42 (196)
T ss_dssp ECTTCEECTTCEECTTCEEESSCEECTTCEEC
T ss_pred ECCCcEECCCCEECCCCEECCCcEECCCceEc
Confidence 444444444444432 233 134444444444
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.66 E-value=5.3e-09 Score=90.96 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=34.3
Q ss_pred CEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCC
Q 009720 413 CFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN 481 (527)
Q Consensus 413 ~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~ 481 (527)
+.+.++.+.+|+||++|.|+ ++.|+++++... +.||+++.|+++.+..+
T Consensus 5 ~~i~~~~i~~s~Ig~g~~I~-~~~i~~s~IG~~-------------------~~Ig~~~~I~~~~i~~~ 53 (135)
T d1yp2a1 5 SKMLDADVTDSVIGEGCVIK-NCKIHHSVVGLR-------------------SCISEGAIIEDSLLMGA 53 (135)
T ss_dssp EEEEEEEEEEEEECTTCEEE-EEEEESCEECTT-------------------CEECTTCEEESCEECCC
T ss_pred cccCCCEEEeCEECCCCEEe-CCEEeccccCCc-------------------EEECCCCEEEcCEEECC
Confidence 44445666778888888885 566777776655 78888888876665544
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.65 E-value=4e-08 Score=90.60 Aligned_cols=11 Identities=9% Similarity=0.335 Sum_probs=4.9
Q ss_pred ccCCEeCCCcc
Q 009720 516 MEKATIEDGMV 526 (527)
Q Consensus 516 ~~~~~I~~g~v 526 (527)
|+||+|++|++
T Consensus 164 g~~~~Igagsv 174 (193)
T d3bswa1 164 ADDSILGGGAT 174 (193)
T ss_dssp CTTCEECTTCE
T ss_pred CCCCEECCCCE
Confidence 44444444443
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=4e-08 Score=91.23 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=35.9
Q ss_pred CCCCCccCCCeeeeceeeeeeEECCCCEEc-ceeE---eecEEcCCcEECCCCEEeeeEEeC
Q 009720 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 387 i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~-~~~i---~~svIg~~~~I~~~~~I~~~~i~~ 444 (527)
+...+.+.||+.+.-. .+..||++|+|+ +|.| ....||++|.|+++|.|.......
T Consensus 57 iG~~~~I~p~~~i~~G--~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~ 116 (200)
T d1krra_ 57 VGENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPV 116 (200)
T ss_dssp CCSSCEECSCEEESCS--TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCS
T ss_pred CCCCCEEcCCEEEecC--CccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccc
Confidence 4556677777777310 144566666665 3444 345899999999999997655443
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=7.2e-08 Score=88.60 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=34.9
Q ss_pred eeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 474 RNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.++.++.++.++.++...+.. .+++...++.++.|..| +.||++|.|++|++|
T Consensus 117 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~-v~IG~~s~IgagsvV 176 (201)
T d2oi6a1 117 GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIAAGTTV 176 (201)
T ss_dssp EEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-EEECTTCEECTTCEE
T ss_pred cccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCC-cEECCCCEECCCCEE
Confidence 356666777777776665543 24555666666666666 556888888888764
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=8.8e-08 Score=87.49 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=24.7
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
++.|+++|+|.+. ....||++|.|+++|.|........
T Consensus 78 ~~~I~~~~~I~d~--~~I~IG~~~~Ig~~v~I~~~~~~~~ 115 (182)
T d1ocxa_ 78 NFFANFDCVMLDV--CPIRIGDNCMLAPGVHIYTATHPID 115 (182)
T ss_dssp SEEECSSEEEECS--SCEEECTTCEECTTCEEECEECCSS
T ss_pred ccEECCCcEEecC--CeEEECCCeEECcCceEeecccccc
Confidence 4555555555421 1247999999999999987765443
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.47 E-value=5.1e-07 Score=81.12 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=52.0
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEee---eEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-----eeE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----NCI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-----~~i 477 (527)
+++|+++|+|. .++.||++|+|+++|.|.. .+..+.+ +.++..+.+. .+.
T Consensus 16 ~~~I~~~a~I~----g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~------------------~~i~~~~~~~~~~~~~~~ 73 (173)
T d1v3wa_ 16 SAFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKY------------------SNVQDNVSIHTSHGYPTE 73 (173)
T ss_dssp TCEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBTTBCEE
T ss_pred CcEECCCCEEe----CceEECCCCEECCCccccccccccccccc------------------cccccccccccccCCCcc
Confidence 34444444443 4688999999999999974 3344443 4444444443 233
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++.++.+....... ...+++++.++.++.|..| ++||++|.|++|++|
T Consensus 74 ~~~~~~~~~~~~~~-~~~Ig~~~~ig~~~~i~~g-v~Ig~~~vIgagsvV 121 (173)
T d1v3wa_ 74 IGEYVTIGHNAMVH-GAKVGNYVIIGISSVILDG-AKIGDHVIIGAGAVV 121 (173)
T ss_dssp ECSSCEECTTCEEE-SCEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred cCcceeeeeeeeee-eeecCCcccccceeeecCC-EEEcceeEEcCCcEE
Confidence 33333333332222 2234444444455666665 344666666666653
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=5e-07 Score=82.74 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=49.8
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
++.|+++|+|+ .+++||++|+|+++|.|.++.+.+. ..+...+...++.++.++.|+
T Consensus 20 ~v~Ig~~vvI~----~~v~IG~~~~I~~~~~I~~~~~~~~-------------------~~~~~~~~~~~~~i~~~~~i~ 76 (201)
T d2oi6a1 20 DVEIDTNVIIE----GNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAACTIG 76 (201)
T ss_dssp SCEECTTEEEE----EEEEECTTCEECTTCEEESCEECTT-------------------CEECSSCEEESCEECTTCEEC
T ss_pred CCEECCCCEEC----CceEECCCcEECCCEEEeeeccCCc-------------------eeeeeeecccccccccccccC
Confidence 45555555554 3689999999999999998888877 566667777777777777777
Q ss_pred CCcEEeCCCCcCCC
Q 009720 486 KDVVIVNKDDVQEA 499 (527)
Q Consensus 486 ~~~~i~~~~~v~~~ 499 (527)
.++.+.....+.+.
T Consensus 77 ~~~~i~~~~~~~~~ 90 (201)
T d2oi6a1 77 PFARLRPGAELLEG 90 (201)
T ss_dssp SSEEECTTCEECTT
T ss_pred cccccccceeeeee
Confidence 76666555444433
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.34 E-value=5.1e-07 Score=89.37 Aligned_cols=61 Identities=7% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcceeE-eecEEcCCcEECCCCEEeeeEE
Q 009720 382 DPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVM 442 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~~~i-~~svIg~~~~I~~~~~I~~~~i 442 (527)
|+.+.++..+++...++|.+ +.| .++.|+++|+|+++.| .++.|+++++|+.++.+.++.+
T Consensus 61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i 124 (320)
T d2f9ca1 61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAI 124 (320)
T ss_dssp STTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEE
T ss_pred CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEE
Confidence 44555555555555555543 444 3556666666654444 3455555555554444444333
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.33 E-value=1.4e-07 Score=87.50 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=9.8
Q ss_pred cEEcCCcEECCCCEE
Q 009720 423 SIVGERSRLDYGVEL 437 (527)
Q Consensus 423 svIg~~~~I~~~~~I 437 (527)
+.||++|.|+++|.|
T Consensus 61 v~IG~~~~Ig~gv~I 75 (203)
T d1mr7a_ 61 LKIGKFCSIGPGVTI 75 (203)
T ss_dssp EEECSSCEECTTCEE
T ss_pred cEECCCeEECCCCcE
Confidence 566666666666665
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.25 E-value=1.1e-06 Score=83.67 Aligned_cols=98 Identities=22% Similarity=0.326 Sum_probs=68.2
Q ss_pred CccCCCeeeeceeeeeeEECCCCEEcceeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 391 PRFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 391 ~~~~~p~~i~~~~i~~s~I~~g~~I~~~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
.|+.|++.+.. .++|++|+++-++.| ..+.||++|.|..++.|+.|...|.+ |.|+.
T Consensus 103 ~RvvPga~VR~----GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~------------------vhis~ 160 (274)
T d3tdta_ 103 FRVVPPATVRQ----GAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSG 160 (274)
T ss_dssp CEECTTCEEBT----TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEECT
T ss_pred EEeCCCceecc----CcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCC------------------eEECC
Confidence 46677777654 577777777766544 35677777777777777777666665 77777
Q ss_pred CcEEe---------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEec
Q 009720 470 NTKIR---------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRS 510 (527)
Q Consensus 470 ~~~I~---------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~ 510 (527)
++.|. .++|++||.||.++.|.....|++++.++.|++|..
T Consensus 161 g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~ 210 (274)
T d3tdta_ 161 GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQ 210 (274)
T ss_dssp TCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEec
Confidence 77776 367889999999988887766666555555555543
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.22 E-value=2.2e-05 Score=81.73 Aligned_cols=216 Identities=17% Similarity=0.262 Sum_probs=129.2
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceee---CCcchhHHHHHHHHHHc----------CC-CEEEEEeccC-chhHHH
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINS----------GI-NKIFVLTQFN-SASLNR 157 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~~----------Gi-~~I~Iv~~~~-~~~i~~ 157 (527)
.++.+|+||||.||||+ ..-||.++|| .|+ .+++..++.+... +. =-++|.|.+. .+....
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~k-sllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCCC-cHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 67999999999999995 5689999998 477 8999988887552 22 2477888764 567888
Q ss_pred HHHH-hhccCCcc----cCCCeEEEeccccC-CCC---CCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceee
Q 009720 158 HIAR-TYFGNGTN----FGDGFVEVLAATQT-PGE---SGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY 226 (527)
Q Consensus 158 hl~~-~y~~~~~~----~~~~~V~vl~~~q~-~~~---~~~~~~~Gta~al~~a~~--~l~~~~~~~~e~~Lvl~gD~l~ 226 (527)
++.+ .||+.... |....+..+..... .-+ .....|-|.++....... .++++...+.+.+.+.+-|++.
T Consensus 177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l 256 (501)
T d1jv1a_ 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (501)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcc
Confidence 8864 34554311 11222222211100 000 000123577765554432 4566656788999999999964
Q ss_pred -cCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceE-EEECCCCceEEEEecCCccccccccccccccCCCccccccCCc
Q 009720 227 -RMDYMDFIQSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPY 304 (527)
Q Consensus 227 -~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~-v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (527)
..---.++-.+..+++++.+-+.+...+. .+-|+ +..|..-+|+++.|=|.... +... +++-+ .-.
T Consensus 257 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-e~~G~l~~~dg~~~vvEysel~~~~~-~~~~-~~g~l---------~f~ 324 (501)
T d1jv1a_ 257 VKVADPRFIGFCIQKGADCGAKVVEKTNPT-EPVGVVCRVDGVYQVVEYSEISLATA-QKRS-SDGRL---------LFN 324 (501)
T ss_dssp CCTTCHHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEEETTEEEEECGGGSCHHHH-HCBC-TTSSB---------SSC
T ss_pred ccccCHHHHHHHHhcccceeEEEEEcCCCC-cccceEEEECCeEEEEEeccCCHHHH-hhcc-CCCcc---------ccc
Confidence 33335678889999999998887765432 23444 44443333444433332111 0000 00000 123
Q ss_pred eeeeeEEEEeHHHHHHHHHh
Q 009720 305 VASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 305 l~~~GIYif~~~iL~~ll~~ 324 (527)
..+++.++|+-++|.++++.
T Consensus 325 ~~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 325 AGNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp EEEEEEEEEEHHHHHHHHHT
T ss_pred ccceeheeeEHHHHHHHHHh
Confidence 57899999999999988764
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=4.3e-06 Score=77.10 Aligned_cols=38 Identities=11% Similarity=0.305 Sum_probs=21.6
Q ss_pred ECCCCEEcc-eeE---eecEEcCCcEECCCCEEe--eeEEeCCc
Q 009720 409 ISHGCFLRE-CTV---EHSIVGERSRLDYGVELK--DTVMLGAD 446 (527)
Q Consensus 409 I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~--~~~i~~~~ 446 (527)
||++|+|++ ..+ .|..||++|.|+.+|.|. ..+.+|++
T Consensus 57 iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~~i~IG~~ 100 (200)
T d1krra_ 57 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDN 100 (200)
T ss_dssp CCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEECSS
T ss_pred CCCCCEEcCCEEEecCCccEECCccEECceEEEecCCCcEeCCC
Confidence 455555553 222 356777888887777774 33444444
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=2.1e-06 Score=78.01 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=26.2
Q ss_pred eeEECCCCEEcceeEeecEEcC--CcEECCCCEEeeeEEeCCc
Q 009720 406 DAIISHGCFLRECTVEHSIVGE--RSRLDYGVELKDTVMLGAD 446 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~--~~~I~~~~~I~~~~i~~~~ 446 (527)
|..||++|+|+. +++|.+ .++||++|.|...+.+.++
T Consensus 72 ni~IG~~~~I~~----~~~I~d~~~I~IG~~~~Ig~~v~I~~~ 110 (182)
T d1ocxa_ 72 NIFLGNNFFANF----DCVMLDVCPIRIGDNCMLAPGVHIYTA 110 (182)
T ss_dssp TEEECSSEEECS----SEEEECSSCEEECTTCEECTTCEEECE
T ss_pred ceeECCccEECC----CcEEecCCeEEECCCeEECcCceEeec
Confidence 677888888873 356644 4588888888777666664
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.90 E-value=3.6e-06 Score=78.11 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=12.9
Q ss_pred eecEEcCCcEECCCCEE
Q 009720 421 EHSIVGERSRLDYGVEL 437 (527)
Q Consensus 421 ~~svIg~~~~I~~~~~I 437 (527)
.+.+||++|.|++||.|
T Consensus 53 ~~v~IG~~~~I~~g~~I 69 (208)
T d1xata_ 53 DKLVIGSFCSIGSGAAF 69 (208)
T ss_dssp CCEEECSSCEECTTCEE
T ss_pred CeeEECCCCEECCCCEE
Confidence 34678888888888877
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.89 E-value=1.6e-05 Score=78.24 Aligned_cols=26 Identities=4% Similarity=-0.083 Sum_probs=9.6
Q ss_pred EECCCcEEeCCCCcCCCccCCCceEE
Q 009720 483 KIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 483 ~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
.|+.++.|.+...+..+..++.++.|
T Consensus 231 ~Ig~~a~I~g~~~i~~~v~Ig~~a~i 256 (320)
T d2f9ca1 231 QVAEHALIEGNCVLKHHVLVGGHAEV 256 (320)
T ss_dssp EECSSCEEESSEEECTEEEECSSCEE
T ss_pred ccCcceeeeeeccccCceEECCCeEE
Confidence 33333333333333333333333333
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.89 E-value=1.2e-05 Score=76.13 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=17.4
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVM 442 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i 442 (527)
++.||+|++|... ...+||+.+.||.+|.|...+.
T Consensus 143 ~~~Ig~g~~i~h~--~givig~~~~ig~~~~i~~~v~ 177 (241)
T d1ssqa_ 143 AAKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVT 177 (241)
T ss_dssp TCEECSSCEESSC--TTCEECTTCEECTTCEECTTCE
T ss_pred CCEEccCcccCcc--ceEEEeccceecCCeeeccccc
Confidence 4555555555421 1245555555555555544333
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.83 E-value=1.4e-05 Score=75.64 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=15.7
Q ss_pred CCEEcceeEeecEEcCCcEECCCCEEeee
Q 009720 412 GCFLRECTVEHSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 412 g~~I~~~~i~~svIg~~~~I~~~~~I~~~ 440 (527)
+++|++. +.||++|.|..++.+...
T Consensus 157 givig~~----~~ig~~~~i~~~v~~~~~ 181 (241)
T d1ssqa_ 157 GIVVGET----SVIENDVSILQGVTLGGT 181 (241)
T ss_dssp TCEECTT----CEECTTCEECTTCEEECC
T ss_pred eEEEecc----ceecCCeeeccccccccc
Confidence 5555533 566677777777777654
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=97.77 E-value=2.2e-06 Score=79.18 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=28.8
Q ss_pred CCCCCccCCCeeeec-eee-eeeEECCCCEEcc-e-------eE-eecEEcCCcEECCCCEEeeeE
Q 009720 387 FYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-C-------TV-EHSIVGERSRLDYGVELKDTV 441 (527)
Q Consensus 387 i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~-------~i-~~svIg~~~~I~~~~~I~~~~ 441 (527)
+|+.+.+...+.+.+ +.+ .++.||++|+|+. + .+ .+++|+.+++||++|.|...+
T Consensus 8 i~P~~~~~~~~~I~~~v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv 73 (203)
T d1mr7a_ 8 MYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGV 73 (203)
T ss_dssp SSCSTTCCSEEEHHHHHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTC
T ss_pred cCCCCCCCceEEECCCeEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCC
Confidence 444443333344433 222 4677888888762 1 11 345556666666666665443
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.07 E-value=0.00011 Score=67.64 Aligned_cols=16 Identities=0% Similarity=-0.097 Sum_probs=11.2
Q ss_pred cCCcEECCCCEEeeeE
Q 009720 426 GERSRLDYGVELKDTV 441 (527)
Q Consensus 426 g~~~~I~~~~~I~~~~ 441 (527)
..+++||++|.|...+
T Consensus 52 ~~~v~IG~~~~I~~g~ 67 (208)
T d1xata_ 52 VDKLVIGSFCSIGSGA 67 (208)
T ss_dssp SCCEEECSSCEECTTC
T ss_pred cCeeEECCCCEECCCC
Confidence 4567888888885543
|