Citrus Sinensis ID: 009726

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
MSGNSAELTKNEAPGEDLPGSSKSTEQDAPPAEALPAVNVNPLDTNTVSDVKNLESHSTPLQEPPSISLDVLGDTSSADPDIQPSAYASVKAKTLEVPNTIEDTTAETDTILSSNSELPESSKVEAPDNSPVESKAGHAAASKAEASTAEPHADSIAELPAESEAKPSFKVQAATPNRNAAPSDTELKNVNDTEIKDKVNKSELPTLPMNEKSNSAQLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNIDNQASGSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSRGLIKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFEQTD
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEcccccHHHHHHHHHHHHccHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccEEEEcccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEEEEccEEEEEEcccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHccccccccccEcccccccccccccccccccccccccccccHHccHcccccccccccccEEEEccccccEEEEEEEcccccEEEEEEcccccHcHEEEEcccccEEEEEcccccccccccccccEEEEEccccccccccEEEEEEccEEEEEEcccccc
msgnsaeltkneapgedlpgssksteqdappaealpavnvnpldtntvsdvknleshstplqeppsisldvlgdtssadpdiqpsayASVKAKtlevpntiedttaetdtilssnselpesskveapdnspveskaghaaaskaeastaephadsiaelpaeseakpsfkvqaatpnrnaapsdtelknvndteikdkvnkselptlpmneksnsaqlflldgndegsesgteeEQSSFMEELENFFrdrsmefkppkfygeglnCLKLWRAVTRlggyekvtscklwrqvgesfkppktcttvswtFRGFYEKALLDYERhktsggelslpvasqsqpmnidnqasgsgRARRDAAARAMQGWhsqhvlgsdeisdpiikdknhlsLQKCEKQLKSrglikrkkpSYMELAVKAARTKTSKSQLDVAvvdlgppadwvkiNVQRTKDCFEVYALVPGLLREEVrvqsdpagrlvisgepehpdnpwgvtpfkkvvslparidphlTSAVVTLHGQlfvrvpfeqtd
msgnsaeltkneapgedlpgssKSTEQDAPPAealpavnvnpLDTNTVSDVKNLEshstplqeppsiSLDVLGDTSSADPDIQPSAYAsvkaktlevpntiedttaetdtilssnselpesskveapdnspVESKAGHAAASKAEASTAEPHADSIAELPAESEAKPSFKVQaatpnrnaapsdtelknvndteikdkvnkselptlpmneksnSAQLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKlwrqvgesfkppktcttvswTFRGFYEKALLDYERHKTSGGELSlpvasqsqpmnidNQASGSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKqlksrglikrkkpsYMELAVKAartktsksqldvaVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVisgepehpdnpwgVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFEQTD
MSGNSAELTKNEAPGEDLPGSSKSTEQDAPPAEALPAVNVNPLDTNTVSDVKNLESHSTPLQEPPSISLDVLGDTSSADPDIQPSAYASVKAKTLEVPNtiedttaetdtiLSSNSELPESSKVEAPDNSPVeskaghaaaskaeastaePHADSIAELPAESEAKPSFKVQAATPNRNAAPSDTELKNVNDTEIKDKVNKSELPTLPMNEKSNSAQLFLLDGNDegsesgteeeqssfmeeleNFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNIDNQasgsgrarrdaaaraMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSRGLIKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFEQTD
*************************************************************************************************************************************************************************************************************************************************************FKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYE********************************************************************************************************LDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQ******LVI*********PWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPF****
**********************************************************************************************************************************************************************************************************************************************FMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTS***************************************************************************************************************DWVKINVQRTKDCFEVYAL***********************************PFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFE***
*******************************AEALPAVNVNPLDTNTVSDVK***********PPSISLDVLGDTSSADPDIQPSAYASVKAKTLEVPNTIEDTTAETDTILS*****************************************SIAELPAESEAKPSFKVQAATPNRNAAPSDTELKNVNDTEIKDKVNKSELPTLPMNEKSNSAQLFLLDGN****************EELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNIDN***********************HVLGSDEISDPIIKDKNHLSLQKCEKQLKSRGLIKRKKPSYMELAV*********SQLDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFEQTD
****************************************************************************************************************************************************************************************************************************************EEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSG*E**********************************************ISD**********************************************QLDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFE***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGNSAELTKNEAPGEDLPGSSKSTEQDAPPAEALPAVNVNPLDTNTVSDVKNLESHSTPLQEPPSISLDVLGDTSSADPDIQPSAYASVKAKTLEVPNTIEDTTAETDTILSSNSELPESSKVEAPDNSPVESKAGHAAASKAEASTAEPHADSIAELPAESEAKPSFKVQAATPNRNAAPSDTELKNVNDTEIKDKVNKSELPTLPMNEKSNSAQLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNIDNQASGSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSRGLIKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFEQTD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query527 2.2.26 [Sep-21-2011]
Q940Y3786 AT-rich interactive domai yes no 0.576 0.386 0.766 1e-136
Q0WNR6434 AT-rich interactive domai no no 0.559 0.679 0.632 1e-104
C0SUW7398 AT-rich interactive domai no no 0.588 0.778 0.582 2e-99
Q9SGS2338 High mobility group B pro no no 0.193 0.301 0.365 2e-08
Q68CP9 1835 AT-rich interactive domai yes no 0.159 0.045 0.317 2e-08
Q9JKB5 1228 AT-rich interactive domai yes no 0.193 0.083 0.273 2e-06
Q4LE39 1312 AT-rich interactive domai no no 0.180 0.072 0.282 2e-06
A2CG63 1314 AT-rich interactive domai no no 0.193 0.077 0.273 2e-06
A2BEA6570 AT-rich interactive domai no no 0.195 0.180 0.289 5e-06
A6PWV5409 AT-rich interactive domai no no 0.197 0.254 0.316 5e-06
>sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=2 SV=1 Back     alignment and function desciption
 Score =  484 bits (1246), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/308 (76%), Positives = 268/308 (87%), Gaps = 4/308 (1%)

Query: 219 FLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGG 278
           FLLD   +G+ESGTEE+QS+FM+EL++FFR+R+M+FKPPKFYGEGLNCLKLWRAVTRLGG
Sbjct: 480 FLLDDASDGNESGTEEDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGG 539

Query: 279 YEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQ 338
           Y+KVT  KLWRQVGESF+PPKTCTTVSWTFRGFYEKALL+YERHK S GEL +P+  + +
Sbjct: 540 YDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLPLELE 599

Query: 339 PMNIDNQASGSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSR 398
           PMNIDNQASGSGRARRDAA+RAMQGWHSQ + G+ E+SDP IKDKN +  QK EKQ+ + 
Sbjct: 600 PMNIDNQASGSGRARRDAASRAMQGWHSQRLNGNGEVSDPAIKDKNLVLHQKREKQIGTT 659

Query: 399 -GLIKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDCFEVYALVP 457
            GL+KRK+ +  E   K A    SKS LDV VVD+GPPADWVKINVQRT+DCFEVYALVP
Sbjct: 660 PGLLKRKRAA--EHGAKNA-IHVSKSMLDVTVVDVGPPADWVKINVQRTQDCFEVYALVP 716

Query: 458 GLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQL 517
           GL+REEVRVQSDPAGRLVISGEPE+P NPWG TPFKKVVSLP RIDPH TSAVVTL+GQL
Sbjct: 717 GLVREEVRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAVVTLNGQL 776

Query: 518 FVRVPFEQ 525
           FVRVP EQ
Sbjct: 777 FVRVPLEQ 784

Arabidopsis thaliana (taxid: 3702)
>sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5 OS=Arabidopsis thaliana GN=ARID5 PE=2 SV=1 Back     alignment and function description
>sp|C0SUW7|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis thaliana GN=ARID6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1 Back     alignment and function description
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2 Back     alignment and function description
>sp|Q9JKB5|ARI4B_RAT AT-rich interactive domain-containing protein 4B OS=Rattus norvegicus GN=Arid4b PE=2 SV=1 Back     alignment and function description
>sp|Q4LE39|ARI4B_HUMAN AT-rich interactive domain-containing protein 4B OS=Homo sapiens GN=ARID4B PE=1 SV=2 Back     alignment and function description
>sp|A2CG63|ARI4B_MOUSE AT-rich interactive domain-containing protein 4B OS=Mus musculus GN=Arid4b PE=1 SV=1 Back     alignment and function description
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio GN=arid3a PE=1 SV=1 Back     alignment and function description
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus GN=Arid3c PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
359476996578 PREDICTED: AT-rich interactive domain-co 0.601 0.548 0.845 1e-156
356538419528 PREDICTED: uncharacterized protein LOC10 0.772 0.770 0.679 1e-155
255575245 656 transcription factor, putative [Ricinus 0.694 0.557 0.712 1e-155
449525987510 PREDICTED: AT-rich interactive domain-co 0.751 0.776 0.723 1e-152
449456893510 PREDICTED: AT-rich interactive domain-co 0.751 0.776 0.720 1e-152
296088504288 unnamed protein product [Vitis vinifera] 0.546 1.0 0.871 1e-145
357484277 708 AT-rich interactive domain-containing pr 0.889 0.662 0.542 1e-144
356561039529 PREDICTED: uncharacterized protein LOC10 0.654 0.652 0.717 1e-136
297832346 796 ARID/BRIGHT DNA-binding domain-containin 0.580 0.384 0.767 1e-135
356529651525 PREDICTED: uncharacterized protein LOC10 0.597 0.6 0.761 1e-134
>gi|359476996|ref|XP_002263596.2| PREDICTED: AT-rich interactive domain-containing protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/318 (84%), Positives = 295/318 (92%), Gaps = 1/318 (0%)

Query: 211 EKSNSAQLFLLDGN-DEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKL 269
           E  N  Q FLL+ N  EG+ESGTEEEQ +FM+ELENFFR+RSMEFKPPKFYGEGLNCLKL
Sbjct: 261 ENGNLNQSFLLETNLYEGNESGTEEEQVAFMKELENFFRERSMEFKPPKFYGEGLNCLKL 320

Query: 270 WRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGEL 329
           WRAVTRLGGY+KVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKT GGEL
Sbjct: 321 WRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGEL 380

Query: 330 SLPVASQSQPMNIDNQASGSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKNHLSLQ 389
           S+PV+S ++PMN++NQASGSGRARRDAAARAMQGWHSQ +LG+ E+ DPIIKDK+ +SLQ
Sbjct: 381 SVPVSSLAEPMNVENQASGSGRARRDAAARAMQGWHSQRLLGNGEVGDPIIKDKSSISLQ 440

Query: 390 KCEKQLKSRGLIKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDC 449
           K EKQLK+ GL+KRKKPS +E AVKAARTK +K QLD AVVD+GPPADWVKINV+RTKDC
Sbjct: 441 KREKQLKNIGLLKRKKPSNLEHAVKAARTKAAKPQLDTAVVDIGPPADWVKINVRRTKDC 500

Query: 450 FEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSA 509
           FEVYALVPGLLREEVRVQSDPAGRLVI+GEPEHPDNPWGVTPFKKVVSLP+RIDPH TSA
Sbjct: 501 FEVYALVPGLLREEVRVQSDPAGRLVITGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSA 560

Query: 510 VVTLHGQLFVRVPFEQTD 527
           VVTLHGQLFVRVPFEQ+D
Sbjct: 561 VVTLHGQLFVRVPFEQSD 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356538419|ref|XP_003537701.1| PREDICTED: uncharacterized protein LOC100791081 [Glycine max] Back     alignment and taxonomy information
>gi|255575245|ref|XP_002528526.1| transcription factor, putative [Ricinus communis] gi|223532028|gb|EEF33838.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449525987|ref|XP_004169997.1| PREDICTED: AT-rich interactive domain-containing protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456893|ref|XP_004146183.1| PREDICTED: AT-rich interactive domain-containing protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296088504|emb|CBI37495.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357484277|ref|XP_003612426.1| AT-rich interactive domain-containing protein [Medicago truncatula] gi|355513761|gb|AES95384.1| AT-rich interactive domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356561039|ref|XP_003548793.1| PREDICTED: uncharacterized protein LOC100803374 [Glycine max] Back     alignment and taxonomy information
>gi|297832346|ref|XP_002884055.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329895|gb|EFH60314.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356529651|ref|XP_003533402.1| PREDICTED: uncharacterized protein LOC100785730 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
TAIR|locus:2827523786 AT2G17410 [Arabidopsis thalian 0.981 0.657 0.460 4.8e-110
TAIR|locus:2037345398 AT1G20910 [Arabidopsis thalian 0.521 0.690 0.568 5e-83
TAIR|locus:2199824338 AT1G76110 [Arabidopsis thalian 0.161 0.251 0.402 2.2e-05
UNIPROTKB|F1LMH4 1226 Arid4b "AT-rich interactive do 0.178 0.076 0.275 0.00059
RGD|619919 1228 Arid4b "AT rich interactive do 0.178 0.076 0.275 0.00059
TAIR|locus:2827523 AT2G17410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
 Identities = 246/534 (46%), Positives = 314/534 (58%)

Query:     4 NSAELTKNEAPGEDLPGS-SKSTEQDAPPAEALPAVNVNPLDTNTVSDVKNLES-H--ST 59
             N+  + + EA   +L G  S + + D      L  V   P  + T+S +++  S H   T
Sbjct:   260 NNDRIDEGEANNLNLAGDGSGAVDHDYLTKTELDKVLEVP-GSETISKLEDRPSEHLSET 318

Query:    60 PLQEPPSISL---DVLGDTSSADPDIQPSAYASVKAKTLEVPNXXXXXXXXXXXXLSSNS 116
              +     + +   ++L D    + D+     +      + V              ++ ++
Sbjct:   319 SMNVEKELEMPAVEILPDNDK-NSDVLAVGVSGDSDNVVSVLPASQTSSDRDEGMITVDA 377

Query:   117 ELPESSKVEAPDNSPVXXXXXXXXXXXXXXXXX-XPHADSIAELPAESEAKPSFKVQAAT 175
             E  E  K++ PD+  V                      D+ + L        S  V+   
Sbjct:   378 EPTEDMKLDVPDSKLVTDTTVDSTNNKDAHVEANTERQDNSSALVLNDANNESAPVKRV- 436

Query:   176 PNRNAAPSDTELKNVNDTEIKDKVNKSELPTLPMNEKSNSAQL-FLLDGNDXXXXXXXXX 234
             P    A S+ + +     ++ + V+K  + T P+ + +  A+  FLLD            
Sbjct:   437 PGPYVASSNIKSEARGSGDLNNGVHKI-VRTPPVFDGTMRAKRSFLLDDASDGNESGTEE 495

Query:   235 XXXXXXXXXXNFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGES 294
                       +FFR+R+M+FKPPKFYGEGLNCLKLWRAVTRLGGY+KVT  KLWRQVGES
Sbjct:   496 DQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGES 555

Query:   295 FKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNIDNQXXXXXXXXX 354
             F+PPKTCTTVSWTFRGFYEKALL+YERHK S GEL +P+  + +PMNIDNQ         
Sbjct:   556 FRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLPLELEPMNIDNQASGSGRARR 615

Query:   355 XXXXXXMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSR-GLIKRKKPSYMELAV 413
                   MQGWHSQ + G+ E+SDP IKDKN +  QK EKQ+ +  GL+KRK+ +  E   
Sbjct:   616 DAASRAMQGWHSQRLNGNGEVSDPAIKDKNLVLHQKREKQIGTTPGLLKRKRAA--EHGA 673

Query:   414 KAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGR 473
             K A    SKS LDV VVD+GPPADWVKINVQRT+DCFEVYALVPGL+REEVRVQSDPAGR
Sbjct:   674 KNA-IHVSKSMLDVTVVDVGPPADWVKINVQRTQDCFEVYALVPGLVREEVRVQSDPAGR 732

Query:   474 LVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFEQTD 527
             LVISGEPE+P NPWG TPFKKVVSLP RIDPH TSAVVTL+GQLFVRVP EQ +
Sbjct:   733 LVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAVVTLNGQLFVRVPLEQLE 786
GO:0003677 "DNA binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
TAIR|locus:2037345 AT1G20910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199824 AT1G76110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMH4 Arid4b "AT-rich interactive domain-containing protein 4B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|619919 Arid4b "AT rich interactive domain 4B (Rbp1 like)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q940Y3ARID3_ARATHNo assigned EC number0.76620.57680.3867yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
smart0050193 smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interac 2e-27
pfam0138890 pfam01388, ARID, ARID/BRIGHT DNA binding domain 2e-26
smart0101488 smart01014, ARID, ARID/BRIGHT DNA binding domain 1e-24
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 4e-08
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 2e-07
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 2e-04
>gnl|CDD|128777 smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interaction domain) domain Back     alignment and domain information 
 Score =  105 bits (264), Expect = 2e-27
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 234 EEQSSFMEELENFFRDRSME-FKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVG 292
            E+  F++ L  F  +R     K P   G+ L+  +L+R V   GGY++VT  K W+++ 
Sbjct: 1   RERVLFLDRLYKFMEERGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIA 60

Query: 293 ESFKPPKTCTTVSWTFRGFYEKALLDYERHKT 324
                P T T+ + + R  YE+ LL YER   
Sbjct: 61  RELGIPDTSTSAASSLRKHYERYLLPYERFLR 92

DNA-binding domain containing a helix-turn-helix structure. Length = 93
>gnl|CDD|216473 pfam01388, ARID, ARID/BRIGHT DNA binding domain Back     alignment and domain information
>gnl|CDD|198082 smart01014, ARID, ARID/BRIGHT DNA binding domain Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 527
smart0050193 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) 99.92
PF0138892 ARID: ARID/BRIGHT DNA binding domain; InterPro: IP 99.9
KOG2744512 consensus DNA-binding proteins Bright/BRCAA1/RBP1 99.88
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.81
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.81
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.8
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.79
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.79
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.79
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.79
PRK11597142 heat shock chaperone IbpB; Provisional 99.78
PRK10743137 heat shock protein IbpA; Provisional 99.78
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.78
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.75
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.73
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.73
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.72
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.7
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.69
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.68
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.67
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.58
KOG2510532 consensus SWI-SNF chromatin-remodeling complex pro 99.49
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.4
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.35
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.34
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.08
cd0646384 p23_like Proteins containing this p23_like domain 98.72
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 98.66
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.37
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 97.67
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 97.38
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 97.35
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 97.11
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 96.86
cd0646892 p23_CacyBP p23_like domain found in proteins simil 96.76
cd0648887 p23_melusin_like p23_like domain similar to the C- 96.74
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 96.51
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 95.54
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 94.11
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 93.9
KOG1309 196 consensus Suppressor of G2 allele of skp1 [Signal 91.98
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 89.28
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 83.95
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain Back     alignment and domain information 
Probab=99.92  E-value=1.4e-25  Score=190.67  Aligned_cols=90  Identities=32%  Similarity=0.609  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCC-CCCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCcHHHHHHHHHH
Q 009726          235 EQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYE  313 (527)
Q Consensus       235 Er~~Fl~~L~~F~e~RGtp~-k~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tSas~~LK~~Ye  313 (527)
                      +++.|+++|.+||+.+|+++ ++|+|+|++||||+||++|+++|||++||.+++|.+||+.||++..++++++.||++|.
T Consensus         2 ~~~~F~~~L~~F~~~~g~~~~~~P~i~g~~vdL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~   81 (93)
T smart00501        2 ERVLFLDRLYKFMEERGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYE   81 (93)
T ss_pred             cHHHHHHHHHHHHHHcCCcCCcCCeECCEeCcHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHH
Confidence            67899999999999999998 79999999999999999999999999999999999999999999889999999999999


Q ss_pred             HhHHHHHhhhh
Q 009726          314 KALLDYERHKT  324 (527)
Q Consensus       314 KyLlpYE~~~~  324 (527)
                      +||++||++..
T Consensus        82 k~L~~yE~~~~   92 (93)
T smart00501       82 RYLLPFERFLR   92 (93)
T ss_pred             HHhHHHHHHhh
Confidence            99999999865

DNA-binding domain containing a helix-turn-helix structure
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans Back     alignment and domain information
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription] Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
2eqy_A122 RBP2 like, jumonji, at rich interactive domain 1B; 2e-26
1ig6_A107 MRF-2, modulator recognition factor 2; DNA binding 3e-26
2rq5_A121 Protein jumonji; developmental protein, nucleus, r 3e-25
2lm1_A107 Lysine-specific demethylase LID; structural genomi 3e-25
2jrz_A117 Histone demethylase jarid1C; bright/ARID domain, h 1e-24
2jxj_A96 Histone demethylase jarid1A; ARID domain, chromati 2e-24
2cxy_A125 BAF250B subunit, HBAF250B; DNA-binding domain, str 6e-24
1c20_A128 DEAD ringer protein; DNA-binding domain, ARID, AT- 3e-23
2kk0_A145 AT-rich interactive domain-containing protein 3A; 1e-20
1kkx_A123 Transcription regulatory protein ADR6; ARID, DNA-b 5e-20
2li6_A116 SWI/SNF chromatin-remodeling complex subunit SWI1; 1e-19
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 4e-06
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 6e-06
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 7e-06
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 1e-05
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 2e-05
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 2e-05
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 6e-05
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 6e-05
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} Length = 122 Back     alignment and structure
 Score =  102 bits (256), Expect = 2e-26
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 223 GNDEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKV 282
           G+   S       + +F++++  ++  +    K P    + L+  +L + V   GG+  V
Sbjct: 1   GSSGSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVV 60

Query: 283 TSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNI 342
              + W ++            V    RG YE+ L  Y     SG  L             
Sbjct: 61  CKDRKWTKIATKMGFA-PGKAVGSHIRGHYERILNPYNLFL-SGDSLRCLQKPNLTSDTK 118

Query: 343 DNQ 345
           D +
Sbjct: 119 DKE 121
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A Length = 107 Back     alignment and structure
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus} Length = 121 Back     alignment and structure
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster} Length = 107 Back     alignment and structure
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A Length = 117 Back     alignment and structure
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Length = 96 Back     alignment and structure
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A Length = 125 Back     alignment and structure
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A Length = 128 Back     alignment and structure
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 145 Back     alignment and structure
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A Length = 123 Back     alignment and structure
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae} Length = 116 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
1ig6_A107 MRF-2, modulator recognition factor 2; DNA binding 99.94
2eqy_A122 RBP2 like, jumonji, at rich interactive domain 1B; 99.93
2jxj_A96 Histone demethylase jarid1A; ARID domain, chromati 99.93
2kk0_A145 AT-rich interactive domain-containing protein 3A; 99.93
2cxy_A125 BAF250B subunit, HBAF250B; DNA-binding domain, str 99.93
2jrz_A117 Histone demethylase jarid1C; bright/ARID domain, h 99.93
2lm1_A107 Lysine-specific demethylase LID; structural genomi 99.93
1c20_A128 DEAD ringer protein; DNA-binding domain, ARID, AT- 99.92
2rq5_A121 Protein jumonji; developmental protein, nucleus, r 99.92
2li6_A116 SWI/SNF chromatin-remodeling complex subunit SWI1; 99.91
1kkx_A123 Transcription regulatory protein ADR6; ARID, DNA-b 99.9
4fei_A102 Heat shock protein-related protein; stress respons 99.83
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.83
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.81
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.81
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.81
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.79
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.78
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.76
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.75
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.73
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.68
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.58
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.68
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.68
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 97.28
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 96.93
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 96.76
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 96.67
3igf_A374 ALL4481 protein; two-domained protein consisting o 96.22
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 96.05
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 95.69
2o30_A131 Nuclear movement protein; MCSG, structural genomic 95.63
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 95.6
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 95.4
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 95.07
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 94.63
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 94.59
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A Back     alignment and structure
Probab=99.94  E-value=8e-28  Score=208.75  Aligned_cols=103  Identities=22%  Similarity=0.468  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCC-CCCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCcHHHHHHHHH
Q 009726          234 EEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFY  312 (527)
Q Consensus       234 eEr~~Fl~~L~~F~e~RGtp~-k~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tSas~~LK~~Y  312 (527)
                      ++++.|+++|.+||+.+|+++ ++|+|+|++||||+||++|+++|||++||++++|.+||+.||++.+++++++.||++|
T Consensus         2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y   81 (107)
T 1ig6_A            2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY   81 (107)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence            578999999999999999999 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhhhhcCCCCCCCcccC
Q 009726          313 EKALLDYERHKTSGGELSLPVASQ  336 (527)
Q Consensus       313 eKyLlpYE~~~~~~ge~~~Pi~s~  336 (527)
                      ++||++||+++.+....++|...+
T Consensus        82 ~k~L~~yE~~~~~~~~~~~p~~~~  105 (107)
T 1ig6_A           82 ERLILPYERFIKGEEDKPLPPIKP  105 (107)
T ss_dssp             HHHTTTTHHHHHHHTSSSSCTTCS
T ss_pred             HHHHHHHHHHHcCCCCCCCCCCCC
Confidence            999999999998877777776543
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Back     alignment and structure
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A Back     alignment and structure
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A Back     alignment and structure
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A Back     alignment and structure
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus} Back     alignment and structure
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 527
d1c20a_128 a.4.3.1 (A:) DNA-binding domain from the dead ring 5e-28
d1ig6a_107 a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo 6e-28
d1ryua_120 a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 2e-25
d1kkxa_102 a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) { 3e-21
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 8e-04
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 0.001
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 128 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: ARID-like
family: ARID domain
domain: DNA-binding domain from the dead ringer protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  106 bits (265), Expect = 5e-28
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 229 ESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKL 287
           E   + ++  F+++L +F + R     + P      L+  +L+  V   GG   V + KL
Sbjct: 16  EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKL 75

Query: 288 WRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQ 338
           W+++ +    P + T+ ++T R  Y K L  YE  K +   LS P   Q+ 
Sbjct: 76  WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKN---LSTPAELQAA 123
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 102 Back     information, alignment and structure
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
d1ryua_120 SWI-SNF complex protein p270, SMARCF1 {Human (Homo 99.94
d1ig6a_107 MRF-2 DNA-binding domain {Human (Homo sapiens) [Ta 99.93
d1c20a_128 DNA-binding domain from the dead ringer protein {F 99.92
d1kkxa_102 Transcription regulator Adr6 (Swi1) {Baker's yeast 99.88
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.79
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.75
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 97.78
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 96.46
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 95.1
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 93.04
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 91.34
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 81.02
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: ARID-like
family: ARID domain
domain: SWI-SNF complex protein p270, SMARCF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-27  Score=208.44  Aligned_cols=108  Identities=19%  Similarity=0.377  Sum_probs=98.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHcCCCCC-CCCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCc
Q 009726          225 DEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTT  303 (527)
Q Consensus       225 ~~~de~g~~eEr~~Fl~~L~~F~e~RGtp~-k~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tS  303 (527)
                      ..+++.+...+++.|++.|.+||++||+++ ++|+|+|++||||+||++|+++|||++||++++|.+||+.||++ .+++
T Consensus        10 ~~L~e~~~~~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gr~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~l~~~-~~~~   88 (120)
T d1ryua_          10 TKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG-TSSS   88 (120)
T ss_dssp             CGGGCSSSCHHHHHHHHHHHHHHHHTTSCSSCCSCCSSSSCCHHHHHHHHHHHTCTTGGGTSSHHHHHHHHTTSC-CSSH
T ss_pred             HHHHccCCcHHHHHHHHHHHHHHHHCCCCCCcCCeECCeeccHHHHHHHHHHhcCHHhhcccchHHHHHHHhCCC-CCCC
Confidence            455566667788899999999999999999 69999999999999999999999999999999999999999997 4789


Q ss_pred             HHHHHHHHHHHhHHHHHhhhhcCCCCCCCc
Q 009726          304 VSWTFRGFYEKALLDYERHKTSGGELSLPV  333 (527)
Q Consensus       304 as~~LK~~YeKyLlpYE~~~~~~ge~~~Pi  333 (527)
                      +++.||++|+|||++||+++..+++.+.++
T Consensus        89 ~~~~Lk~~Y~r~L~~yE~~~~~~~~~p~~~  118 (120)
T d1ryua_          89 AASSLKKQYIQCLYAFECKIERGEDPPPDI  118 (120)
T ss_dssp             HHHHHHHHHHHHTTTTTTTTTTTTSCCCST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence            999999999999999999999988776443
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure